Query 010809
Match_columns 500
No_of_seqs 567 out of 3482
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 04:48:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0465 HflB ATP-dependent Zn 100.0 1.6E-81 3.4E-86 674.7 35.9 416 66-500 2-420 (596)
2 KOG0731 AAA+-type ATPase conta 100.0 6.4E-72 1.4E-76 609.4 37.3 406 93-500 163-583 (774)
3 KOG0734 AAA+-type ATPase conta 100.0 1E-72 2.2E-77 584.8 27.0 276 222-500 295-571 (752)
4 CHL00176 ftsH cell division pr 100.0 4.3E-67 9.3E-72 576.4 42.2 406 91-500 47-452 (638)
5 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-64 2.4E-69 507.7 17.6 261 217-477 137-398 (406)
6 PRK10733 hflB ATP-dependent me 100.0 2.2E-58 4.8E-63 511.2 43.2 419 62-500 3-422 (644)
7 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-54 5.7E-59 466.7 32.7 322 173-500 2-325 (495)
8 KOG0730 AAA+-type ATPase [Post 100.0 6.2E-52 1.3E-56 441.4 25.4 247 223-472 426-675 (693)
9 KOG0727 26S proteasome regulat 100.0 5.8E-51 1.2E-55 391.8 23.8 319 147-474 80-399 (408)
10 KOG0726 26S proteasome regulat 100.0 1.8E-50 3.9E-55 394.7 13.4 300 171-475 130-430 (440)
11 KOG0733 Nuclear AAA ATPase (VC 100.0 4.7E-49 1E-53 414.2 24.9 247 225-474 505-772 (802)
12 KOG0729 26S proteasome regulat 100.0 3.2E-49 6.9E-54 382.1 19.9 270 210-479 156-426 (435)
13 KOG0728 26S proteasome regulat 100.0 2.1E-48 4.6E-53 373.7 21.7 256 222-477 138-394 (404)
14 KOG0652 26S proteasome regulat 100.0 6E-48 1.3E-52 372.4 19.6 255 220-474 160-415 (424)
15 KOG0733 Nuclear AAA ATPase (VC 100.0 4.5E-46 9.7E-51 391.8 21.3 228 224-454 183-414 (802)
16 CHL00206 ycf2 Ycf2; Provisiona 100.0 5E-45 1.1E-49 421.2 23.3 235 255-500 1621-1904(2281)
17 PTZ00454 26S protease regulato 100.0 5.7E-44 1.2E-48 375.0 29.3 255 221-475 135-390 (398)
18 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-44 4.9E-49 347.6 20.8 242 223-471 113-355 (368)
19 KOG0738 AAA+-type ATPase [Post 100.0 3.2E-44 7E-49 362.3 21.8 246 223-473 204-471 (491)
20 PRK03992 proteasome-activating 100.0 9.9E-43 2.2E-47 365.8 29.2 258 221-478 121-379 (389)
21 KOG0736 Peroxisome assembly fa 100.0 5.1E-43 1.1E-47 376.4 24.3 250 222-473 663-934 (953)
22 PTZ00361 26 proteosome regulat 100.0 1.5E-42 3.3E-47 366.9 25.6 254 221-474 173-427 (438)
23 TIGR01242 26Sp45 26S proteasom 100.0 5.2E-40 1.1E-44 342.5 28.2 252 220-471 111-363 (364)
24 KOG0651 26S proteasome regulat 100.0 1.1E-41 2.5E-46 335.8 13.7 250 223-472 124-374 (388)
25 COG0464 SpoVK ATPases of the A 100.0 4E-40 8.6E-45 356.2 25.3 245 224-471 235-483 (494)
26 TIGR01243 CDC48 AAA family ATP 100.0 5.2E-40 1.1E-44 370.5 27.0 246 225-472 447-711 (733)
27 KOG0735 AAA+-type ATPase [Post 100.0 1.4E-39 3E-44 347.2 22.9 228 224-454 660-888 (952)
28 CHL00195 ycf46 Ycf46; Provisio 100.0 2.2E-38 4.8E-43 339.7 27.8 242 225-473 222-465 (489)
29 KOG0739 AAA+-type ATPase [Post 100.0 6.6E-40 1.4E-44 321.5 13.9 227 222-454 124-353 (439)
30 KOG0737 AAA+-type ATPase [Post 100.0 1.3E-38 2.8E-43 321.5 21.0 244 226-474 87-362 (386)
31 TIGR03689 pup_AAA proteasome A 100.0 7.4E-36 1.6E-40 320.3 26.8 264 220-485 171-493 (512)
32 KOG0730 AAA+-type ATPase [Post 100.0 3.2E-34 7E-39 306.2 19.3 242 226-478 180-423 (693)
33 KOG0741 AAA+-type ATPase [Post 100.0 4.7E-34 1E-38 297.1 16.2 252 221-473 209-492 (744)
34 TIGR01243 CDC48 AAA family ATP 100.0 5.7E-33 1.2E-37 313.4 26.0 247 225-474 172-438 (733)
35 PLN00020 ribulose bisphosphate 100.0 4.7E-33 1E-37 283.9 22.7 260 226-499 110-392 (413)
36 KOG0732 AAA+-type ATPase conta 100.0 2.6E-32 5.7E-37 305.7 19.6 252 224-478 258-532 (1080)
37 KOG0740 AAA+-type ATPase [Post 100.0 2.5E-31 5.4E-36 276.8 16.6 245 224-474 146-407 (428)
38 CHL00181 cbbX CbbX; Provisiona 99.9 3.2E-22 6.8E-27 202.5 21.4 212 230-453 22-256 (287)
39 TIGR02880 cbbX_cfxQ probable R 99.9 3.4E-22 7.4E-27 202.0 20.5 208 232-453 23-255 (284)
40 TIGR02881 spore_V_K stage V sp 99.9 7.9E-22 1.7E-26 196.8 21.5 210 229-453 4-240 (261)
41 PF00004 AAA: ATPase family as 99.9 6.8E-22 1.5E-26 174.5 14.8 130 267-400 1-132 (132)
42 KOG0743 AAA+-type ATPase [Post 99.9 3.4E-21 7.3E-26 200.2 17.5 208 227-443 197-412 (457)
43 KOG0742 AAA+-type ATPase [Post 99.9 2.5E-20 5.5E-25 190.2 19.6 235 226-471 350-612 (630)
44 PRK00080 ruvB Holliday junctio 99.8 1.3E-19 2.8E-24 186.7 20.8 221 222-471 16-250 (328)
45 TIGR00635 ruvB Holliday juncti 99.8 3.4E-19 7.4E-24 181.0 21.0 213 229-470 2-228 (305)
46 PF05496 RuvB_N: Holliday junc 99.8 4E-19 8.6E-24 171.6 19.4 195 224-447 17-225 (233)
47 KOG0744 AAA+-type ATPase [Post 99.8 2.8E-19 6.1E-24 178.3 14.2 237 230-470 141-413 (423)
48 KOG0736 Peroxisome assembly fa 99.8 1.1E-18 2.5E-23 189.2 19.6 222 245-472 412-654 (953)
49 TIGR02639 ClpA ATP-dependent C 99.8 1.2E-18 2.7E-23 196.9 20.3 226 226-475 177-433 (731)
50 COG0464 SpoVK ATPases of the A 99.8 2.8E-18 6E-23 186.0 21.1 219 250-473 4-228 (494)
51 PRK11034 clpA ATP-dependent Cl 99.8 1.7E-18 3.6E-23 194.9 19.8 227 227-477 182-439 (758)
52 KOG0735 AAA+-type ATPase [Post 99.8 2.4E-18 5.1E-23 185.3 19.0 233 231-474 408-651 (952)
53 COG2256 MGS1 ATPase related to 99.8 3.9E-18 8.4E-23 175.0 17.8 204 225-471 18-238 (436)
54 COG2255 RuvB Holliday junction 99.8 7.3E-18 1.6E-22 166.1 18.9 217 226-471 21-251 (332)
55 PRK00149 dnaA chromosomal repl 99.8 1.5E-17 3.3E-22 178.4 22.4 224 225-473 116-351 (450)
56 TIGR02902 spore_lonB ATP-depen 99.8 1.4E-17 3E-22 181.8 20.4 220 220-470 54-331 (531)
57 PRK14956 DNA polymerase III su 99.8 1.3E-17 2.7E-22 177.8 19.5 207 221-468 8-243 (484)
58 TIGR00362 DnaA chromosomal rep 99.8 4.8E-17 1E-21 172.2 23.3 224 225-474 104-340 (405)
59 PRK14088 dnaA chromosomal repl 99.8 3.5E-17 7.7E-22 174.9 21.9 227 225-476 99-337 (440)
60 PRK04195 replication factor C 99.8 3.7E-17 8.1E-22 176.8 20.6 212 220-468 3-222 (482)
61 TIGR00763 lon ATP-dependent pr 99.8 2E-17 4.4E-22 188.1 18.9 164 231-414 320-505 (775)
62 PRK14962 DNA polymerase III su 99.8 4E-17 8.7E-22 175.5 19.6 207 222-469 5-240 (472)
63 PRK12402 replication factor C 99.7 1E-16 2.2E-21 164.4 21.8 214 219-469 3-247 (337)
64 TIGR02928 orc1/cdc6 family rep 99.7 1.2E-16 2.6E-21 166.1 22.5 224 227-472 11-275 (365)
65 PRK12323 DNA polymerase III su 99.7 2E-17 4.3E-22 180.5 16.3 210 221-465 6-243 (700)
66 PRK14961 DNA polymerase III su 99.7 7.1E-17 1.5E-21 168.7 19.8 214 221-469 6-242 (363)
67 PRK07003 DNA polymerase III su 99.7 5.2E-17 1.1E-21 179.2 19.1 204 221-465 6-238 (830)
68 PRK14086 dnaA chromosomal repl 99.7 2.3E-16 5.1E-21 172.2 23.8 225 225-474 282-518 (617)
69 PRK13342 recombination factor 99.7 9E-17 2E-21 170.6 20.0 202 223-471 4-219 (413)
70 PRK06645 DNA polymerase III su 99.7 1.1E-16 2.4E-21 172.9 20.2 218 220-469 10-254 (507)
71 PLN03025 replication factor C 99.7 1E-16 2.3E-21 164.5 19.0 203 221-466 3-218 (319)
72 PRK14958 DNA polymerase III su 99.7 5.7E-17 1.2E-21 175.9 17.9 207 221-468 6-241 (509)
73 PRK14960 DNA polymerase III su 99.7 8.2E-17 1.8E-21 176.1 19.1 205 222-467 6-239 (702)
74 PRK00411 cdc6 cell division co 99.7 6.9E-16 1.5E-20 162.1 24.0 224 227-472 26-283 (394)
75 TIGR03420 DnaA_homol_Hda DnaA 99.7 4.4E-16 9.5E-21 151.0 20.8 205 226-468 10-225 (226)
76 PRK06893 DNA replication initi 99.7 4.9E-16 1.1E-20 152.4 20.9 213 223-468 8-227 (229)
77 PRK08903 DnaA regulatory inact 99.7 6.2E-16 1.4E-20 150.8 21.0 203 224-469 11-224 (227)
78 PRK07994 DNA polymerase III su 99.7 2.5E-16 5.5E-21 173.8 19.3 206 222-468 7-241 (647)
79 PRK14964 DNA polymerase III su 99.7 2.4E-16 5.1E-21 169.4 18.6 204 223-467 5-237 (491)
80 PRK14949 DNA polymerase III su 99.7 3.1E-16 6.8E-21 176.0 19.9 196 222-448 7-225 (944)
81 PRK12422 chromosomal replicati 99.7 1.6E-15 3.5E-20 162.2 24.3 232 225-476 105-348 (445)
82 PRK14951 DNA polymerase III su 99.7 4.2E-16 9.1E-21 171.6 19.4 213 221-468 6-246 (618)
83 PRK08691 DNA polymerase III su 99.7 3.2E-16 6.9E-21 172.7 18.2 214 221-469 6-242 (709)
84 PHA02544 44 clamp loader, smal 99.7 8.4E-16 1.8E-20 156.9 20.1 209 218-466 8-226 (316)
85 TIGR03345 VI_ClpV1 type VI sec 99.7 5.5E-16 1.2E-20 177.3 20.0 218 226-468 182-428 (852)
86 PRK14963 DNA polymerase III su 99.7 8.8E-16 1.9E-20 166.4 20.5 204 223-468 6-237 (504)
87 PRK05563 DNA polymerase III su 99.7 8.5E-16 1.8E-20 168.7 19.9 204 223-467 8-240 (559)
88 PRK08084 DNA replication initi 99.7 2.9E-15 6.2E-20 147.6 21.4 207 224-468 15-233 (235)
89 TIGR02397 dnaX_nterm DNA polym 99.7 1E-15 2.2E-20 158.5 18.9 208 221-469 4-240 (355)
90 PRK13341 recombination factor 99.7 1.5E-15 3.1E-20 170.5 21.4 212 221-470 18-246 (725)
91 PRK14969 DNA polymerase III su 99.7 7.4E-16 1.6E-20 168.1 17.6 213 222-469 7-242 (527)
92 PRK14087 dnaA chromosomal repl 99.7 3.1E-15 6.6E-20 160.4 22.0 221 227-471 111-348 (450)
93 CHL00095 clpC Clp protease ATP 99.7 2.4E-15 5.1E-20 172.3 21.9 198 227-450 175-400 (821)
94 PRK14959 DNA polymerase III su 99.7 1.3E-15 2.8E-20 167.0 18.2 207 221-468 6-241 (624)
95 PRK08727 hypothetical protein; 99.7 9E-15 1.9E-19 143.9 22.0 208 224-470 12-230 (233)
96 PRK10865 protein disaggregatio 99.7 7.3E-16 1.6E-20 176.7 16.4 167 226-417 173-357 (857)
97 PRK00440 rfc replication facto 99.7 6.5E-15 1.4E-19 149.8 21.0 208 219-469 5-224 (319)
98 PRK14957 DNA polymerase III su 99.7 2.5E-15 5.5E-20 163.5 19.0 206 222-468 7-241 (546)
99 PRK07133 DNA polymerase III su 99.7 2.7E-15 5.8E-20 166.7 19.3 213 220-467 7-239 (725)
100 PRK07764 DNA polymerase III su 99.7 2.3E-15 4.9E-20 170.9 19.1 205 222-466 6-241 (824)
101 PRK14952 DNA polymerase III su 99.7 2.9E-15 6.3E-20 164.4 18.8 205 223-467 5-240 (584)
102 COG0593 DnaA ATPase involved i 99.7 1.1E-14 2.3E-19 152.5 21.8 240 224-490 80-330 (408)
103 PRK05896 DNA polymerase III su 99.7 2.6E-15 5.7E-20 163.9 17.7 207 220-467 5-240 (605)
104 PRK14953 DNA polymerase III su 99.6 4.9E-15 1.1E-19 160.0 19.5 213 221-468 6-241 (486)
105 PRK14970 DNA polymerase III su 99.6 3.4E-15 7.5E-20 155.9 17.8 215 220-469 6-231 (367)
106 PRK14965 DNA polymerase III su 99.6 2.7E-15 5.9E-20 165.4 17.5 205 222-467 7-240 (576)
107 PRK07940 DNA polymerase III su 99.6 5.2E-15 1.1E-19 155.9 18.6 182 229-440 3-211 (394)
108 PRK09111 DNA polymerase III su 99.6 6.1E-15 1.3E-19 162.5 19.8 215 220-469 13-255 (598)
109 PRK08451 DNA polymerase III su 99.6 9.2E-15 2E-19 158.5 20.5 206 221-467 4-238 (535)
110 KOG2028 ATPase related to the 99.6 2.8E-15 6.1E-20 151.8 15.3 209 224-470 131-367 (554)
111 PF00308 Bac_DnaA: Bacterial d 99.6 1.2E-14 2.5E-19 141.8 18.8 202 226-451 3-216 (219)
112 PRK05642 DNA replication initi 99.6 2.6E-14 5.5E-19 140.8 21.3 213 223-468 11-232 (234)
113 TIGR03346 chaperone_ClpB ATP-d 99.6 4.8E-15 1E-19 170.3 18.4 202 226-452 168-397 (852)
114 KOG0989 Replication factor C, 99.6 5E-15 1.1E-19 147.5 15.7 197 218-449 23-236 (346)
115 PRK14955 DNA polymerase III su 99.6 4.8E-15 1E-19 156.7 16.7 217 221-468 6-254 (397)
116 PTZ00112 origin recognition co 99.6 1.6E-14 3.5E-19 160.5 21.1 217 230-474 754-1009(1164)
117 PRK06620 hypothetical protein; 99.6 1.9E-14 4.1E-19 139.9 18.4 198 224-468 9-213 (214)
118 PRK06647 DNA polymerase III su 99.6 1.5E-14 3.3E-19 158.6 19.4 212 222-468 7-241 (563)
119 PRK05342 clpX ATP-dependent pr 99.6 1.8E-14 4E-19 152.5 19.1 221 229-452 68-379 (412)
120 PRK06305 DNA polymerase III su 99.6 2.1E-14 4.5E-19 154.1 18.9 207 221-468 7-243 (451)
121 PRK14948 DNA polymerase III su 99.6 2.8E-14 6.1E-19 158.1 19.9 208 222-465 7-239 (620)
122 TIGR02640 gas_vesic_GvpN gas v 99.6 5.3E-14 1.2E-18 140.7 19.4 186 266-474 23-260 (262)
123 COG0466 Lon ATP-dependent Lon 99.6 1.2E-14 2.6E-19 158.0 15.5 164 231-414 323-508 (782)
124 PRK14954 DNA polymerase III su 99.6 4.3E-14 9.3E-19 156.2 19.4 215 223-468 8-254 (620)
125 COG2812 DnaX DNA polymerase II 99.6 2.2E-14 4.9E-19 154.1 16.1 209 223-466 8-239 (515)
126 PRK14950 DNA polymerase III su 99.6 7.1E-14 1.5E-18 154.6 19.7 211 222-467 7-241 (585)
127 KOG2004 Mitochondrial ATP-depe 99.6 8.3E-15 1.8E-19 158.6 11.4 164 230-415 410-597 (906)
128 COG1474 CDC6 Cdc6-related prot 99.6 1.3E-13 2.9E-18 143.9 20.1 217 230-471 16-265 (366)
129 PRK10787 DNA-binding ATP-depen 99.6 4.1E-14 8.9E-19 160.6 17.5 218 231-469 322-580 (784)
130 PRK13407 bchI magnesium chelat 99.6 3.7E-14 8E-19 146.3 14.4 222 226-474 3-309 (334)
131 TIGR00390 hslU ATP-dependent p 99.6 1.2E-13 2.7E-18 144.6 17.5 176 232-411 13-343 (441)
132 COG3829 RocR Transcriptional r 99.5 1.3E-14 2.9E-19 154.2 10.1 215 225-469 239-496 (560)
133 PRK09087 hypothetical protein; 99.5 3.3E-13 7.2E-18 132.2 18.7 204 223-471 13-222 (226)
134 PRK05201 hslU ATP-dependent pr 99.5 1.6E-13 3.4E-18 144.0 17.3 176 232-411 16-345 (443)
135 PRK14971 DNA polymerase III su 99.5 2.5E-13 5.3E-18 150.6 19.7 206 222-468 8-243 (614)
136 CHL00081 chlI Mg-protoporyphyr 99.5 1.3E-13 2.9E-18 142.6 15.6 226 225-476 11-327 (350)
137 TIGR00382 clpX endopeptidase C 99.5 3.3E-13 7.1E-18 142.6 18.4 220 232-453 78-386 (413)
138 TIGR02903 spore_lon_C ATP-depe 99.5 9.5E-13 2.1E-17 146.3 22.1 218 225-470 148-429 (615)
139 PRK11034 clpA ATP-dependent Cl 99.5 4.3E-13 9.4E-18 151.4 19.1 167 232-415 459-667 (758)
140 COG1224 TIP49 DNA helicase TIP 99.5 1.4E-12 3E-17 132.3 18.7 129 324-472 292-433 (450)
141 PF05673 DUF815: Protein of un 99.5 1.6E-12 3.5E-17 127.4 18.5 193 224-446 20-244 (249)
142 TIGR02030 BchI-ChlI magnesium 99.5 6.5E-13 1.4E-17 137.3 16.5 219 229-475 2-313 (337)
143 TIGR02639 ClpA ATP-dependent C 99.5 1.4E-12 3.1E-17 147.9 19.6 168 231-415 454-663 (731)
144 TIGR01650 PD_CobS cobaltochela 99.5 8.8E-13 1.9E-17 134.9 15.1 138 265-416 65-235 (327)
145 COG2204 AtoC Response regulato 99.4 4.1E-13 8.8E-18 142.7 11.9 208 227-465 137-385 (464)
146 cd00009 AAA The AAA+ (ATPases 99.4 2.3E-12 5E-17 113.5 14.4 123 264-399 19-150 (151)
147 TIGR02329 propionate_PrpR prop 99.4 9.5E-13 2.1E-17 143.5 14.0 214 227-468 208-467 (526)
148 PRK15424 propionate catabolism 99.4 7.3E-13 1.6E-17 144.4 12.8 210 228-465 216-479 (538)
149 TIGR01817 nifA Nif-specific re 99.4 4.8E-13 1E-17 146.6 11.2 209 226-465 191-439 (534)
150 TIGR02442 Cob-chelat-sub cobal 99.4 2.7E-12 5.9E-17 143.3 16.9 215 229-475 2-308 (633)
151 PRK11608 pspF phage shock prot 99.4 1.5E-12 3.3E-17 134.3 13.8 194 229-451 4-240 (326)
152 TIGR02974 phageshock_pspF psp 99.4 1.8E-12 4E-17 133.8 13.8 191 233-451 1-233 (329)
153 PRK05022 anaerobic nitric oxid 99.4 2.8E-12 6.1E-17 139.9 14.8 209 229-465 185-437 (509)
154 PRK10820 DNA-binding transcrip 99.4 2.3E-12 5E-17 140.8 14.1 207 226-464 199-447 (520)
155 COG0542 clpA ATP-binding subun 99.4 8.2E-12 1.8E-16 139.3 18.0 166 226-415 165-347 (786)
156 PRK09112 DNA polymerase III su 99.4 1E-11 2.2E-16 129.2 17.5 190 225-446 17-243 (351)
157 COG1221 PspF Transcriptional r 99.4 1.2E-12 2.6E-17 136.9 10.5 198 227-452 74-310 (403)
158 PF05621 TniB: Bacterial TniB 99.4 1.3E-11 2.9E-16 124.4 17.6 217 231-466 34-284 (302)
159 COG3604 FhlA Transcriptional r 99.4 1.2E-12 2.7E-17 137.8 10.3 197 227-451 219-456 (550)
160 KOG1969 DNA replication checkp 99.4 1.3E-11 2.7E-16 134.6 18.1 228 217-466 257-532 (877)
161 PRK11388 DNA-binding transcrip 99.4 3.5E-12 7.6E-17 142.7 14.2 212 227-469 321-569 (638)
162 KOG0991 Replication factor C, 99.4 3.8E-12 8.2E-17 122.8 12.3 201 219-463 15-229 (333)
163 PHA02244 ATPase-like protein 99.4 2.3E-11 4.9E-16 126.1 18.9 147 229-404 95-264 (383)
164 TIGR03345 VI_ClpV1 type VI sec 99.4 1.6E-11 3.4E-16 141.0 19.3 198 231-448 566-827 (852)
165 PRK07471 DNA polymerase III su 99.4 2E-11 4.2E-16 127.8 18.4 187 225-445 13-240 (365)
166 TIGR03015 pepcterm_ATPase puta 99.4 2.7E-11 5.9E-16 120.5 18.6 190 266-471 45-266 (269)
167 TIGR03346 chaperone_ClpB ATP-d 99.4 2.7E-11 5.8E-16 139.5 19.5 201 231-451 565-825 (852)
168 COG0714 MoxR-like ATPases [Gen 99.3 4E-11 8.7E-16 123.8 18.4 129 266-411 45-199 (329)
169 PRK10865 protein disaggregatio 99.3 4.3E-11 9.4E-16 137.7 20.3 167 230-416 567-781 (857)
170 PRK15429 formate hydrogenlyase 99.3 2.4E-11 5.2E-16 137.1 17.2 197 227-451 372-609 (686)
171 TIGR00368 Mg chelatase-related 99.3 3.4E-11 7.4E-16 130.5 17.3 213 227-469 188-497 (499)
172 PRK05564 DNA polymerase III su 99.3 4.4E-11 9.4E-16 122.6 16.6 170 228-434 1-182 (313)
173 COG0542 clpA ATP-binding subun 99.3 1.2E-11 2.7E-16 137.9 13.0 160 231-415 491-706 (786)
174 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.3E-15 134.2 20.0 168 231-415 509-733 (821)
175 COG0470 HolB ATPase involved i 99.3 9E-11 2E-15 119.5 17.3 150 231-411 1-178 (325)
176 PRK13531 regulatory ATPase Rav 99.3 1.2E-10 2.7E-15 124.4 18.8 213 232-475 21-287 (498)
177 smart00350 MCM minichromosome 99.3 6.8E-11 1.5E-15 129.0 17.0 224 232-471 204-504 (509)
178 TIGR00764 lon_rel lon-related 99.3 9.6E-11 2.1E-15 130.0 18.4 101 369-471 268-391 (608)
179 TIGR00678 holB DNA polymerase 99.3 6.2E-11 1.3E-15 112.4 14.6 144 262-434 12-183 (188)
180 PRK07399 DNA polymerase III su 99.3 1.7E-10 3.6E-15 118.5 18.2 184 229-446 2-224 (314)
181 TIGR00602 rad24 checkpoint pro 99.3 9E-11 1.9E-15 130.0 16.9 256 217-498 70-386 (637)
182 smart00382 AAA ATPases associa 99.3 5.7E-11 1.2E-15 103.3 12.1 126 264-401 2-147 (148)
183 PRK04132 replication factor C 99.2 2.8E-10 6E-15 129.3 18.1 169 267-466 567-749 (846)
184 KOG1942 DNA helicase, TBP-inte 99.2 4.5E-10 9.7E-15 111.7 17.0 131 323-473 296-440 (456)
185 PF07728 AAA_5: AAA domain (dy 99.2 4.6E-12 1E-16 113.9 2.5 113 266-392 1-139 (139)
186 TIGR02915 PEP_resp_reg putativ 99.2 7.7E-11 1.7E-15 126.0 12.2 206 229-465 137-383 (445)
187 COG2607 Predicted ATPase (AAA+ 99.2 1.2E-09 2.5E-14 106.3 18.7 194 224-447 53-277 (287)
188 PRK05707 DNA polymerase III su 99.2 2.9E-10 6.3E-15 117.4 15.3 152 261-438 19-198 (328)
189 TIGR02031 BchD-ChlD magnesium 99.2 4.5E-10 9.8E-15 124.4 17.3 193 266-474 18-261 (589)
190 PRK11331 5-methylcytosine-spec 99.2 2.8E-10 6E-15 120.8 14.2 141 230-400 174-357 (459)
191 PRK10923 glnG nitrogen regulat 99.2 1.8E-10 4E-15 124.0 13.0 209 229-468 136-385 (469)
192 PF01078 Mg_chelatase: Magnesi 99.2 4.5E-11 9.8E-16 114.8 7.3 142 229-403 1-204 (206)
193 PF06068 TIP49: TIP49 C-termin 99.2 9.6E-10 2.1E-14 113.3 17.4 66 229-301 22-89 (398)
194 COG1219 ClpX ATP-dependent pro 99.2 7.7E-11 1.7E-15 118.3 9.0 128 232-364 62-203 (408)
195 PRK08058 DNA polymerase III su 99.1 1.1E-09 2.5E-14 113.1 16.6 149 229-412 3-180 (329)
196 COG1220 HslU ATP-dependent pro 99.1 4.6E-10 1E-14 113.5 12.5 84 324-411 251-346 (444)
197 PRK11361 acetoacetate metaboli 99.1 8E-10 1.7E-14 118.4 14.8 209 229-468 141-390 (457)
198 KOG0741 AAA+-type ATPase [Post 99.1 1.4E-09 3E-14 115.2 14.9 141 265-411 539-683 (744)
199 PRK08116 hypothetical protein; 99.1 1.3E-09 2.8E-14 109.7 14.1 124 264-404 114-252 (268)
200 PF00158 Sigma54_activat: Sigm 99.1 6.1E-10 1.3E-14 104.4 11.0 123 233-379 1-144 (168)
201 PRK09862 putative ATP-dependen 99.1 1.7E-09 3.6E-14 117.3 15.8 212 228-469 188-490 (506)
202 PF07724 AAA_2: AAA domain (Cd 99.1 2.5E-10 5.5E-15 107.3 8.4 110 266-380 5-131 (171)
203 COG1239 ChlI Mg-chelatase subu 99.1 1.2E-09 2.7E-14 113.8 13.9 217 227-474 13-325 (423)
204 COG0606 Predicted ATPase with 99.1 2.1E-10 4.6E-15 121.0 7.8 210 227-469 175-483 (490)
205 TIGR01818 ntrC nitrogen regula 99.1 6.6E-10 1.4E-14 119.4 11.8 208 230-468 133-381 (463)
206 PRK15115 response regulator Gl 99.1 9.4E-10 2E-14 117.6 12.4 206 232-468 135-381 (444)
207 PRK08181 transposase; Validate 99.1 3.5E-09 7.6E-14 106.4 15.5 124 228-378 80-208 (269)
208 smart00763 AAA_PrkA PrkA AAA d 99.0 2.6E-09 5.5E-14 110.8 14.4 83 229-318 48-143 (361)
209 PRK12377 putative replication 99.0 6E-09 1.3E-13 103.6 13.7 100 265-379 102-206 (248)
210 PRK06871 DNA polymerase III su 99.0 1.6E-08 3.4E-13 104.2 16.6 146 262-434 22-195 (325)
211 PRK06964 DNA polymerase III su 99.0 4.7E-09 1E-13 108.8 12.7 134 261-413 18-203 (342)
212 PRK07993 DNA polymerase III su 99.0 9.1E-09 2E-13 106.6 14.2 151 261-438 21-199 (334)
213 PF13177 DNA_pol3_delta2: DNA 99.0 3.8E-09 8.2E-14 98.4 10.3 133 235-400 1-160 (162)
214 KOG0990 Replication factor C, 99.0 6E-09 1.3E-13 105.0 12.2 223 216-475 26-276 (360)
215 PTZ00111 DNA replication licen 98.9 1.9E-08 4.1E-13 114.3 17.2 130 264-409 492-652 (915)
216 PRK13765 ATP-dependent proteas 98.9 7.6E-09 1.6E-13 115.1 13.8 100 369-470 277-399 (637)
217 PRK08769 DNA polymerase III su 98.9 2.4E-08 5.3E-13 102.7 16.4 150 261-434 23-200 (319)
218 PRK07952 DNA replication prote 98.9 1.1E-08 2.4E-13 101.5 13.4 130 227-378 68-204 (244)
219 KOG1514 Origin recognition com 98.9 2.7E-08 5.9E-13 108.8 17.2 226 232-477 397-661 (767)
220 PRK06526 transposase; Provisio 98.9 5.4E-09 1.2E-13 104.3 11.0 125 228-379 73-201 (254)
221 PRK10365 transcriptional regul 98.9 4.4E-09 9.5E-14 112.1 10.5 206 232-468 140-386 (441)
222 COG3284 AcoR Transcriptional a 98.9 1.6E-09 3.4E-14 117.6 6.8 182 266-468 338-554 (606)
223 COG3283 TyrR Transcriptional r 98.9 5E-09 1.1E-13 106.8 9.4 198 226-451 199-432 (511)
224 PF14532 Sigma54_activ_2: Sigm 98.9 3.8E-09 8.2E-14 95.4 7.0 125 234-399 1-136 (138)
225 PRK06835 DNA replication prote 98.9 1.6E-08 3.5E-13 104.5 12.5 123 265-404 184-320 (329)
226 KOG2035 Replication factor C, 98.9 7.2E-08 1.6E-12 95.6 15.7 184 220-434 2-220 (351)
227 KOG0745 Putative ATP-dependent 98.8 1.2E-08 2.5E-13 106.3 10.0 74 266-339 228-307 (564)
228 PF01637 Arch_ATPase: Archaeal 98.8 2.7E-08 5.9E-13 95.5 12.1 163 266-441 22-232 (234)
229 PRK08939 primosomal protein Dn 98.8 3.7E-08 8E-13 100.9 13.5 101 263-379 155-261 (306)
230 KOG2680 DNA helicase TIP49, TB 98.8 1.3E-07 2.8E-12 94.7 16.5 130 324-473 289-431 (454)
231 KOG2227 Pre-initiation complex 98.8 1.4E-07 3E-12 99.4 17.1 227 230-478 149-422 (529)
232 PRK09183 transposase/IS protei 98.8 3.7E-08 8E-13 98.6 12.4 100 265-379 103-206 (259)
233 PRK06090 DNA polymerase III su 98.8 1.1E-07 2.4E-12 97.8 16.2 130 261-412 22-178 (319)
234 PF07726 AAA_3: ATPase family 98.8 2.2E-09 4.8E-14 95.7 2.7 112 266-393 1-130 (131)
235 PF03215 Rad17: Rad17 cell cyc 98.8 1.1E-07 2.3E-12 103.9 16.4 212 217-452 5-269 (519)
236 PF01695 IstB_IS21: IstB-like 98.7 3.6E-08 7.9E-13 93.2 9.0 99 264-378 47-149 (178)
237 PRK13406 bchD magnesium chelat 98.7 1.1E-07 2.3E-12 105.2 13.5 190 265-474 26-253 (584)
238 COG1484 DnaC DNA replication p 98.7 1.3E-07 2.8E-12 94.5 12.6 70 264-335 105-179 (254)
239 PF13173 AAA_14: AAA domain 98.7 1.4E-07 3.1E-12 84.0 10.8 118 265-405 3-126 (128)
240 KOG1051 Chaperone HSP104 and r 98.7 1.7E-07 3.7E-12 106.5 13.6 132 231-378 562-710 (898)
241 PRK06921 hypothetical protein; 98.7 2E-07 4.3E-12 93.7 12.3 103 264-378 117-224 (266)
242 PRK08699 DNA polymerase III su 98.6 2.1E-07 4.5E-12 96.2 12.2 132 262-412 19-183 (325)
243 PF12775 AAA_7: P-loop contain 98.6 6.8E-07 1.5E-11 90.2 12.9 164 227-415 6-194 (272)
244 PF13401 AAA_22: AAA domain; P 98.5 2.4E-07 5.1E-12 81.7 8.0 85 265-362 5-113 (131)
245 PF03969 AFG1_ATPase: AFG1-lik 98.5 3.6E-07 7.8E-12 95.7 9.8 106 261-382 59-172 (362)
246 PF06480 FtsH_ext: FtsH Extrac 98.5 9.9E-08 2.1E-12 81.6 4.6 96 65-164 2-109 (110)
247 KOG1970 Checkpoint RAD17-RFC c 98.5 2.2E-06 4.8E-11 91.9 14.8 210 218-451 69-320 (634)
248 cd01120 RecA-like_NTPases RecA 98.5 1.4E-06 3E-11 78.7 11.4 110 267-380 2-138 (165)
249 PF00493 MCM: MCM2/3/5 family 98.5 5.6E-08 1.2E-12 100.7 1.8 216 232-471 25-326 (331)
250 PF12774 AAA_6: Hydrolytic ATP 98.5 9.2E-06 2E-10 80.1 17.2 158 266-450 34-226 (231)
251 COG1241 MCM2 Predicted ATPase 98.4 4.4E-07 9.6E-12 100.9 8.6 188 266-472 321-593 (682)
252 COG3267 ExeA Type II secretory 98.4 1.4E-05 3.1E-10 78.9 17.6 186 266-465 53-267 (269)
253 KOG0480 DNA replication licens 98.4 4E-06 8.7E-11 91.1 13.7 222 229-471 343-643 (764)
254 KOG0478 DNA replication licens 98.4 8.3E-06 1.8E-10 89.4 15.4 223 232-471 430-724 (804)
255 PF05729 NACHT: NACHT domain 98.4 7.1E-06 1.5E-10 74.6 12.9 140 266-416 2-165 (166)
256 PRK05818 DNA polymerase III su 98.4 1E-05 2.2E-10 80.7 14.8 121 262-401 5-147 (261)
257 PRK05917 DNA polymerase III su 98.3 5.9E-06 1.3E-10 83.8 13.0 122 261-401 16-154 (290)
258 PF00931 NB-ARC: NB-ARC domain 98.3 1.7E-05 3.7E-10 79.4 15.7 172 242-443 4-202 (287)
259 PLN03210 Resistant to P. syrin 98.3 7.8E-06 1.7E-10 97.7 14.5 177 226-436 179-389 (1153)
260 TIGR02237 recomb_radB DNA repa 98.3 4.7E-06 1E-10 80.1 10.0 114 261-377 9-148 (209)
261 PF13191 AAA_16: AAA ATPase do 98.2 2E-06 4.3E-11 80.1 6.2 59 233-300 2-63 (185)
262 KOG2170 ATPase of the AAA+ sup 98.2 7.1E-05 1.5E-09 75.5 16.7 226 232-481 83-329 (344)
263 PRK07276 DNA polymerase III su 98.2 4.1E-05 8.8E-10 77.9 14.8 128 262-411 22-172 (290)
264 PRK07132 DNA polymerase III su 98.2 9E-05 2E-09 75.8 17.4 126 263-412 17-160 (299)
265 KOG0482 DNA replication licens 98.2 8E-06 1.7E-10 86.8 9.5 220 232-470 343-637 (721)
266 COG1485 Predicted ATPase [Gene 98.1 7E-06 1.5E-10 84.3 8.2 106 261-383 62-176 (367)
267 PRK11823 DNA repair protein Ra 98.1 2E-05 4.3E-10 85.0 12.0 78 261-338 77-171 (446)
268 cd01124 KaiC KaiC is a circadi 98.1 2.6E-05 5.7E-10 73.0 11.4 102 267-379 2-140 (187)
269 cd01121 Sms Sms (bacterial rad 98.1 2.6E-05 5.7E-10 82.1 11.4 78 261-338 79-173 (372)
270 KOG1968 Replication factor C, 98.0 3.7E-05 8E-10 88.3 12.0 211 219-450 308-535 (871)
271 TIGR02688 conserved hypothetic 98.0 9.1E-05 2E-09 78.5 13.4 75 238-335 194-272 (449)
272 PRK09361 radB DNA repair and r 98.0 4.9E-05 1.1E-09 74.0 10.4 115 260-376 19-159 (225)
273 KOG2383 Predicted ATPase [Gene 98.0 6.1E-05 1.3E-09 78.5 11.3 160 261-448 111-297 (467)
274 TIGR01618 phage_P_loop phage n 98.0 3.1E-05 6.8E-10 75.7 8.9 73 263-337 11-95 (220)
275 PF00910 RNA_helicase: RNA hel 97.9 3E-05 6.4E-10 67.1 7.0 23 267-289 1-23 (107)
276 KOG1051 Chaperone HSP104 and r 97.9 0.00013 2.9E-09 83.4 13.5 199 230-453 185-412 (898)
277 PRK08533 flagellar accessory p 97.9 0.0002 4.4E-09 70.5 12.9 108 262-379 22-163 (230)
278 KOG0477 DNA replication licens 97.8 7.9E-05 1.7E-09 81.1 10.3 227 232-473 450-759 (854)
279 PF14516 AAA_35: AAA-like doma 97.8 0.0017 3.7E-08 67.4 19.9 168 266-445 33-241 (331)
280 PHA00729 NTP-binding motif con 97.8 3.2E-05 7E-10 75.8 6.6 24 266-289 19-42 (226)
281 COG1618 Predicted nucleotide k 97.8 0.00012 2.7E-09 67.7 9.8 26 263-288 4-29 (179)
282 PRK06067 flagellar accessory p 97.8 0.00011 2.4E-09 72.0 10.1 41 260-300 21-64 (234)
283 TIGR02012 tigrfam_recA protein 97.8 0.00012 2.6E-09 75.5 10.4 116 261-376 52-189 (321)
284 PRK00131 aroK shikimate kinase 97.8 7.8E-05 1.7E-09 68.8 8.3 40 263-304 3-42 (175)
285 KOG2228 Origin recognition com 97.8 0.00021 4.6E-09 73.2 11.7 160 232-414 25-219 (408)
286 cd01394 radB RadB. The archaea 97.8 0.00023 4.9E-09 68.9 11.6 38 261-298 16-56 (218)
287 PRK15455 PrkA family serine pr 97.8 2.9E-05 6.4E-10 84.9 5.9 63 229-297 74-137 (644)
288 TIGR00416 sms DNA repair prote 97.8 0.00021 4.5E-09 77.3 12.2 77 261-337 91-184 (454)
289 COG1373 Predicted ATPase (AAA+ 97.7 0.00032 6.9E-09 74.7 13.0 123 266-408 39-161 (398)
290 PRK08118 topology modulation p 97.7 6.2E-05 1.3E-09 70.4 6.2 32 266-297 3-34 (167)
291 PRK13949 shikimate kinase; Pro 97.7 0.00033 7.1E-09 65.7 10.9 31 266-296 3-33 (169)
292 PF13207 AAA_17: AAA domain; P 97.7 3.3E-05 7.2E-10 67.2 3.7 30 267-296 2-31 (121)
293 TIGR02858 spore_III_AA stage I 97.7 0.00017 3.7E-09 72.7 9.2 113 265-399 112-256 (270)
294 PRK04296 thymidine kinase; Pro 97.7 0.0002 4.3E-09 68.4 9.2 70 266-335 4-90 (190)
295 PF07693 KAP_NTPase: KAP famil 97.7 0.0016 3.5E-08 66.5 16.5 78 323-415 172-264 (325)
296 KOG0481 DNA replication licens 97.7 0.00016 3.4E-09 77.3 9.1 194 266-469 366-637 (729)
297 PF05707 Zot: Zonular occluden 97.7 6.2E-05 1.3E-09 71.9 5.5 123 267-401 3-146 (193)
298 COG4650 RtcR Sigma54-dependent 97.6 0.00098 2.1E-08 67.2 13.7 190 261-471 205-443 (531)
299 PRK14722 flhF flagellar biosyn 97.6 0.00019 4.2E-09 75.4 9.2 109 264-387 137-267 (374)
300 cd00983 recA RecA is a bacter 97.6 0.00029 6.3E-09 72.8 10.3 78 261-338 52-148 (325)
301 COG5271 MDN1 AAA ATPase contai 97.6 0.00038 8.3E-09 82.4 12.1 136 264-415 1543-1704(4600)
302 cd03283 ABC_MutS-like MutS-lik 97.6 0.00032 7E-09 67.5 10.1 105 265-382 26-151 (199)
303 TIGR03877 thermo_KaiC_1 KaiC d 97.6 0.00065 1.4E-08 67.0 12.1 41 260-300 17-60 (237)
304 PRK04841 transcriptional regul 97.6 0.0016 3.4E-08 75.7 17.2 155 266-442 34-224 (903)
305 PF06745 KaiC: KaiC; InterPro 97.6 0.0004 8.6E-09 67.6 10.3 108 260-377 15-159 (226)
306 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00039 8.5E-09 67.8 10.0 116 260-376 15-167 (235)
307 cd01393 recA_like RecA is a b 97.6 0.00029 6.3E-09 68.3 9.0 116 260-376 15-166 (226)
308 cd00046 DEXDc DEAD-like helica 97.6 0.00058 1.3E-08 58.9 10.0 23 266-288 2-24 (144)
309 PRK14532 adenylate kinase; Pro 97.6 0.00032 7E-09 66.2 8.9 37 266-304 2-38 (188)
310 PRK07261 topology modulation p 97.6 0.00012 2.6E-09 68.6 5.9 32 266-297 2-33 (171)
311 PF00437 T2SE: Type II/IV secr 97.6 0.00011 2.5E-09 73.5 5.9 98 224-334 97-208 (270)
312 PF13671 AAA_33: AAA domain; P 97.6 0.00026 5.7E-09 63.2 7.7 37 267-305 2-38 (143)
313 COG1116 TauB ABC-type nitrate/ 97.5 0.00011 2.4E-09 72.5 5.4 22 266-287 31-52 (248)
314 KOG2543 Origin recognition com 97.5 0.0014 3E-08 68.3 13.5 160 231-413 6-192 (438)
315 PRK12339 2-phosphoglycerate ki 97.5 0.0017 3.8E-08 62.5 13.5 186 264-473 3-193 (197)
316 PRK06762 hypothetical protein; 97.5 0.00035 7.7E-09 64.5 8.4 41 264-304 2-42 (166)
317 cd01122 GP4d_helicase GP4d_hel 97.5 0.00048 1E-08 68.8 9.7 39 260-298 26-68 (271)
318 cd03216 ABC_Carb_Monos_I This 97.5 0.00047 1E-08 64.0 8.5 102 265-380 27-143 (163)
319 PRK10536 hypothetical protein; 97.5 0.0006 1.3E-08 68.1 9.7 46 228-287 52-97 (262)
320 cd01128 rho_factor Transcripti 97.5 0.0014 3.1E-08 65.3 12.2 111 266-376 18-164 (249)
321 PRK12723 flagellar biosynthesi 97.4 0.00069 1.5E-08 71.8 10.3 129 263-406 173-327 (388)
322 COG0563 Adk Adenylate kinase a 97.4 0.00057 1.2E-08 64.8 8.7 34 266-301 2-35 (178)
323 PF13604 AAA_30: AAA domain; P 97.4 0.00048 1E-08 66.1 8.2 97 266-378 20-132 (196)
324 PRK13948 shikimate kinase; Pro 97.4 0.00054 1.2E-08 65.2 8.4 43 262-306 8-50 (182)
325 cd01131 PilT Pilus retraction 97.4 0.00071 1.5E-08 65.0 9.2 67 266-332 3-83 (198)
326 PRK04040 adenylate kinase; Pro 97.4 0.0018 3.9E-08 61.8 12.0 35 264-300 2-38 (188)
327 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0018 4E-08 62.9 12.2 109 260-377 12-152 (224)
328 PRK09376 rho transcription ter 97.4 0.00082 1.8E-08 70.9 10.1 72 267-338 172-271 (416)
329 PRK05973 replicative DNA helic 97.4 0.00074 1.6E-08 66.9 9.2 40 260-299 60-102 (237)
330 cd01130 VirB11-like_ATPase Typ 97.4 0.00028 6.1E-09 66.9 6.1 68 265-332 26-109 (186)
331 PRK00771 signal recognition pa 97.4 0.0026 5.6E-08 68.4 14.0 39 262-300 93-134 (437)
332 cd00984 DnaB_C DnaB helicase C 97.4 0.0011 2.5E-08 64.8 10.3 39 260-298 9-51 (242)
333 COG0703 AroK Shikimate kinase 97.4 0.00052 1.1E-08 64.5 7.3 32 265-296 3-34 (172)
334 PRK09354 recA recombinase A; P 97.4 0.00068 1.5E-08 70.7 8.9 77 261-337 57-152 (349)
335 PF03266 NTPase_1: NTPase; In 97.4 0.00068 1.5E-08 63.6 8.0 27 266-292 1-30 (168)
336 PF06309 Torsin: Torsin; Inte 97.3 0.00034 7.4E-09 62.5 5.5 52 231-288 25-77 (127)
337 PRK13947 shikimate kinase; Pro 97.3 0.0002 4.3E-09 66.4 4.2 31 266-296 3-33 (171)
338 PRK13946 shikimate kinase; Pro 97.3 0.00062 1.3E-08 64.5 7.7 34 263-296 9-42 (184)
339 TIGR02782 TrbB_P P-type conjug 97.3 0.00026 5.5E-09 72.5 5.3 66 265-332 133-213 (299)
340 PTZ00202 tuzin; Provisional 97.3 0.0077 1.7E-07 64.5 16.3 63 228-299 259-321 (550)
341 TIGR03881 KaiC_arch_4 KaiC dom 97.3 0.0026 5.7E-08 61.9 12.2 39 260-298 16-57 (229)
342 TIGR02238 recomb_DMC1 meiotic 97.3 0.00077 1.7E-08 69.5 8.8 114 261-375 93-242 (313)
343 cd00464 SK Shikimate kinase (S 97.3 0.00041 9E-09 62.8 5.9 39 266-306 1-39 (154)
344 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0023 5.1E-08 64.1 11.7 39 260-298 32-73 (259)
345 PRK14974 cell division protein 97.3 0.0021 4.5E-08 66.9 11.3 73 263-335 139-234 (336)
346 TIGR01420 pilT_fam pilus retra 97.3 0.00069 1.5E-08 70.6 7.8 67 266-332 124-204 (343)
347 COG4178 ABC-type uncharacteriz 97.3 0.00061 1.3E-08 75.3 7.5 54 312-380 522-575 (604)
348 PRK03839 putative kinase; Prov 97.3 0.00024 5.3E-09 66.6 3.9 30 266-295 2-31 (180)
349 PRK04328 hypothetical protein; 97.3 0.0033 7.2E-08 62.6 12.2 40 260-299 19-61 (249)
350 TIGR02236 recomb_radA DNA repa 97.3 0.0016 3.4E-08 66.8 10.1 116 260-376 91-244 (310)
351 PRK00625 shikimate kinase; Pro 97.3 0.00028 6.1E-09 66.5 4.2 31 266-296 2-32 (173)
352 PLN02200 adenylate kinase fami 97.2 0.00089 1.9E-08 66.1 7.9 42 260-303 39-80 (234)
353 PLN02674 adenylate kinase 97.2 0.0016 3.5E-08 64.7 9.7 38 264-303 31-68 (244)
354 PRK04301 radA DNA repair and r 97.2 0.0015 3.3E-08 67.3 9.9 116 260-376 98-250 (317)
355 TIGR03574 selen_PSTK L-seryl-t 97.2 0.002 4.4E-08 63.8 10.4 36 267-302 2-40 (249)
356 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0028 6.1E-08 61.7 11.1 22 265-286 30-51 (213)
357 PLN03187 meiotic recombination 97.2 0.0013 2.8E-08 68.7 9.0 114 261-375 123-272 (344)
358 PRK05800 cobU adenosylcobinami 97.2 0.0017 3.8E-08 61.0 9.0 95 266-363 3-114 (170)
359 COG3854 SpoIIIAA ncharacterize 97.2 0.0031 6.6E-08 61.9 10.7 70 265-334 138-229 (308)
360 PRK09519 recA DNA recombinatio 97.2 0.0022 4.8E-08 73.1 11.2 115 261-375 57-193 (790)
361 PRK06581 DNA polymerase III su 97.2 0.0054 1.2E-07 60.7 12.5 135 264-417 15-164 (263)
362 cd00227 CPT Chloramphenicol (C 97.2 0.0004 8.7E-09 65.1 4.4 39 265-303 3-41 (175)
363 smart00487 DEXDc DEAD-like hel 97.2 0.003 6.6E-08 57.9 10.2 32 266-297 26-62 (201)
364 PRK13900 type IV secretion sys 97.2 0.00085 1.8E-08 69.7 7.2 70 264-333 160-245 (332)
365 COG1066 Sms Predicted ATP-depe 97.2 0.0039 8.5E-08 65.7 11.8 94 266-359 95-204 (456)
366 PTZ00035 Rad51 protein; Provis 97.2 0.0022 4.7E-08 66.9 10.0 115 260-375 114-264 (337)
367 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0033 7.1E-08 63.3 11.0 94 228-334 57-160 (264)
368 COG5271 MDN1 AAA ATPase contai 97.1 0.0046 1E-07 73.8 13.0 135 266-415 890-1048(4600)
369 cd00544 CobU Adenosylcobinamid 97.1 0.0035 7.6E-08 58.9 10.3 106 267-378 2-125 (169)
370 cd03238 ABC_UvrA The excision 97.1 0.0049 1.1E-07 58.3 11.3 114 265-400 22-163 (176)
371 TIGR02655 circ_KaiC circadian 97.1 0.0034 7.4E-08 68.5 11.7 77 261-337 260-367 (484)
372 PRK13833 conjugal transfer pro 97.1 0.0009 1.9E-08 69.2 6.8 68 265-332 145-224 (323)
373 PF04665 Pox_A32: Poxvirus A32 97.1 0.0091 2E-07 59.3 13.5 132 263-413 12-169 (241)
374 PHA02530 pseT polynucleotide k 97.1 0.0031 6.8E-08 63.9 10.6 40 264-304 2-41 (300)
375 PF00448 SRP54: SRP54-type pro 97.1 0.0017 3.6E-08 62.5 8.1 108 264-383 1-131 (196)
376 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0038 8.1E-08 56.8 9.9 97 265-380 27-128 (144)
377 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.00045 9.8E-09 64.7 4.0 36 267-304 2-37 (183)
378 PF05272 VirE: Virulence-assoc 97.1 0.0027 5.9E-08 61.2 9.4 124 241-400 35-169 (198)
379 TIGR02788 VirB11 P-type DNA tr 97.1 0.0012 2.6E-08 67.8 7.4 69 263-333 143-228 (308)
380 KOG3347 Predicted nucleotide k 97.1 0.0004 8.7E-09 63.6 3.3 34 266-301 9-42 (176)
381 cd03222 ABC_RNaseL_inhibitor T 97.1 0.0041 8.8E-08 58.9 10.3 102 266-380 27-133 (177)
382 TIGR02239 recomb_RAD51 DNA rep 97.1 0.0019 4.2E-08 66.6 8.8 115 260-375 92-242 (316)
383 PRK12724 flagellar biosynthesi 97.1 0.0081 1.8E-07 64.1 13.6 115 263-386 222-353 (432)
384 PRK06217 hypothetical protein; 97.1 0.00051 1.1E-08 64.9 4.1 31 266-296 3-33 (183)
385 PRK14531 adenylate kinase; Pro 97.1 0.00057 1.2E-08 64.6 4.5 36 265-302 3-38 (183)
386 TIGR02655 circ_KaiC circadian 97.1 0.005 1.1E-07 67.2 12.4 42 260-301 17-62 (484)
387 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0023 5.1E-08 58.6 8.4 103 265-381 26-142 (157)
388 PF01745 IPT: Isopentenyl tran 97.1 0.00087 1.9E-08 65.0 5.7 151 266-433 3-161 (233)
389 PF12780 AAA_8: P-loop contain 97.1 0.0031 6.7E-08 63.7 9.9 218 232-469 9-262 (268)
390 PRK13894 conjugal transfer ATP 97.1 0.00089 1.9E-08 69.2 6.1 68 265-332 149-228 (319)
391 PRK11889 flhF flagellar biosyn 97.1 0.008 1.7E-07 63.7 13.2 72 263-334 240-331 (436)
392 cd02020 CMPK Cytidine monophos 97.1 0.00053 1.2E-08 61.4 3.8 30 267-296 2-31 (147)
393 cd03228 ABCC_MRP_Like The MRP 97.1 0.0026 5.7E-08 59.3 8.6 103 265-382 29-158 (171)
394 cd02027 APSK Adenosine 5'-phos 97.0 0.0023 5.1E-08 58.6 8.0 36 267-302 2-40 (149)
395 COG4088 Predicted nucleotide k 97.0 0.0019 4E-08 62.4 7.3 22 267-288 4-25 (261)
396 smart00534 MUTSac ATPase domai 97.0 0.0044 9.6E-08 58.7 9.9 19 267-285 2-20 (185)
397 PLN03186 DNA repair protein RA 97.0 0.0028 6.1E-08 66.1 9.2 114 262-376 121-270 (342)
398 PTZ00088 adenylate kinase 1; P 97.0 0.00076 1.7E-08 66.5 4.7 38 263-302 5-42 (229)
399 PF09848 DUF2075: Uncharacteri 97.0 0.0035 7.5E-08 65.5 9.8 23 266-288 3-25 (352)
400 cd01125 repA Hexameric Replica 97.0 0.003 6.6E-08 62.2 8.9 33 267-299 4-51 (239)
401 PRK13851 type IV secretion sys 97.0 0.0013 2.8E-08 68.6 6.5 70 263-332 161-245 (344)
402 cd01428 ADK Adenylate kinase ( 97.0 0.00067 1.4E-08 63.9 3.9 35 267-303 2-36 (194)
403 cd03246 ABCC_Protease_Secretio 97.0 0.0034 7.4E-08 58.6 8.7 101 266-380 30-157 (173)
404 PRK08154 anaerobic benzoate ca 97.0 0.0027 5.9E-08 65.3 8.5 34 262-295 131-164 (309)
405 cd02021 GntK Gluconate kinase 97.0 0.00072 1.6E-08 61.3 3.8 33 267-301 2-34 (150)
406 PF10236 DAP3: Mitochondrial r 97.0 0.054 1.2E-06 55.8 18.0 130 312-442 142-308 (309)
407 cd03243 ABC_MutS_homologs The 97.0 0.0036 7.9E-08 60.0 8.8 21 266-286 31-51 (202)
408 TIGR02525 plasmid_TraJ plasmid 97.0 0.0033 7.1E-08 66.3 9.2 68 266-333 151-235 (372)
409 PRK13695 putative NTPase; Prov 96.9 0.011 2.4E-07 55.1 11.9 23 266-288 2-24 (174)
410 PF08423 Rad51: Rad51; InterP 96.9 0.0034 7.4E-08 62.8 8.8 109 267-376 41-185 (256)
411 cd03247 ABCC_cytochrome_bd The 96.9 0.0092 2E-07 55.9 11.2 103 264-381 28-159 (178)
412 PF13481 AAA_25: AAA domain; P 96.9 0.0022 4.9E-08 60.4 7.0 73 266-338 34-156 (193)
413 cd03223 ABCD_peroxisomal_ALDP 96.9 0.0057 1.2E-07 56.9 9.6 99 265-380 28-149 (166)
414 PRK03731 aroL shikimate kinase 96.9 0.00094 2E-08 62.0 4.3 30 266-295 4-33 (171)
415 PRK13764 ATPase; Provisional 96.9 0.0014 3E-08 72.9 6.3 69 265-334 258-335 (602)
416 PRK14730 coaE dephospho-CoA ki 96.9 0.0044 9.6E-08 59.4 8.9 42 266-309 3-44 (195)
417 PRK14530 adenylate kinase; Pro 96.9 0.00097 2.1E-08 64.6 4.4 35 266-302 5-39 (215)
418 PRK14529 adenylate kinase; Pro 96.9 0.006 1.3E-07 59.9 9.9 35 266-302 2-36 (223)
419 PRK04220 2-phosphoglycerate ki 96.9 0.037 8.1E-07 56.6 16.0 39 262-301 90-128 (301)
420 PRK13808 adenylate kinase; Pro 96.9 0.006 1.3E-07 63.3 10.3 35 266-302 2-36 (333)
421 PRK08233 hypothetical protein; 96.9 0.0041 8.9E-08 57.8 8.3 33 265-297 4-37 (182)
422 PRK06547 hypothetical protein; 96.9 0.001 2.3E-08 62.6 4.3 33 263-295 14-46 (172)
423 PRK06696 uridine kinase; Valid 96.9 0.002 4.2E-08 62.9 6.4 39 263-301 21-62 (223)
424 PRK05541 adenylylsulfate kinas 96.9 0.0032 6.9E-08 58.8 7.5 40 263-302 6-48 (176)
425 TIGR01313 therm_gnt_kin carboh 96.9 0.00082 1.8E-08 61.9 3.5 32 267-300 1-32 (163)
426 PRK05057 aroK shikimate kinase 96.9 0.0011 2.4E-08 62.2 4.4 34 264-297 4-37 (172)
427 COG2274 SunT ABC-type bacterio 96.9 0.0021 4.6E-08 73.0 7.4 69 310-400 614-682 (709)
428 cd03280 ABC_MutS2 MutS2 homolo 96.9 0.0071 1.5E-07 57.9 10.1 20 266-285 30-49 (200)
429 PRK09302 circadian clock prote 96.9 0.011 2.3E-07 65.0 12.7 42 261-302 28-73 (509)
430 KOG0479 DNA replication licens 96.8 0.034 7.5E-07 60.8 15.8 38 434-471 605-642 (818)
431 COG4619 ABC-type uncharacteriz 96.8 0.0096 2.1E-07 56.0 10.1 23 265-287 30-52 (223)
432 PRK10416 signal recognition pa 96.8 0.015 3.3E-07 60.1 12.7 37 262-298 112-151 (318)
433 PF05970 PIF1: PIF1-like helic 96.8 0.0072 1.6E-07 63.5 10.6 55 237-300 4-61 (364)
434 cd03230 ABC_DR_subfamily_A Thi 96.8 0.013 2.9E-07 54.6 11.2 101 266-380 28-156 (173)
435 COG2874 FlaH Predicted ATPases 96.8 0.0092 2E-07 57.9 10.1 127 250-388 12-176 (235)
436 PF00406 ADK: Adenylate kinase 96.8 0.0025 5.5E-08 58.0 6.1 35 269-305 1-35 (151)
437 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0035 7.5E-08 65.2 7.7 81 230-317 59-142 (358)
438 cd03115 SRP The signal recogni 96.8 0.0093 2E-07 55.5 10.0 34 267-300 3-39 (173)
439 PF02562 PhoH: PhoH-like prote 96.8 0.0038 8.2E-08 60.5 7.4 23 266-288 21-43 (205)
440 COG1121 ZnuC ABC-type Mn/Zn tr 96.8 0.0036 7.9E-08 62.4 7.4 56 311-380 145-200 (254)
441 TIGR03499 FlhF flagellar biosy 96.8 0.005 1.1E-07 62.5 8.6 38 263-300 193-235 (282)
442 COG1102 Cmk Cytidylate kinase 96.8 0.0011 2.5E-08 61.4 3.5 28 267-294 3-30 (179)
443 cd03214 ABC_Iron-Siderophores_ 96.8 0.012 2.7E-07 55.2 10.7 104 265-381 26-160 (180)
444 PHA02774 E1; Provisional 96.8 0.008 1.7E-07 66.3 10.5 33 265-297 435-468 (613)
445 PLN02199 shikimate kinase 96.8 0.008 1.7E-07 61.3 9.9 31 266-296 104-134 (303)
446 PRK14528 adenylate kinase; Pro 96.8 0.0014 3E-08 62.4 4.2 34 266-301 3-36 (186)
447 PRK00081 coaE dephospho-CoA ki 96.7 0.017 3.6E-07 55.3 11.5 42 265-309 3-44 (194)
448 TIGR00152 dephospho-CoA kinase 96.7 0.01 2.3E-07 56.1 10.0 41 267-309 2-42 (188)
449 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0015 3.2E-08 61.2 4.1 34 266-301 5-38 (188)
450 TIGR01526 nadR_NMN_Atrans nico 96.7 0.0044 9.6E-08 64.2 7.9 39 266-304 164-202 (325)
451 COG2074 2-phosphoglycerate kin 96.7 0.052 1.1E-06 54.0 14.7 188 260-474 85-284 (299)
452 PRK14527 adenylate kinase; Pro 96.7 0.0014 3.1E-08 62.2 3.8 37 263-301 5-41 (191)
453 TIGR00064 ftsY signal recognit 96.7 0.021 4.5E-07 57.8 12.4 37 262-298 70-109 (272)
454 cd02019 NK Nucleoside/nucleoti 96.7 0.0038 8.2E-08 49.6 5.6 31 267-297 2-33 (69)
455 cd03232 ABC_PDR_domain2 The pl 96.7 0.017 3.8E-07 54.9 11.2 22 266-287 35-56 (192)
456 PRK14526 adenylate kinase; Pro 96.7 0.0052 1.1E-07 59.8 7.5 35 266-302 2-36 (211)
457 KOG0058 Peptide exporter, ABC 96.7 0.0091 2E-07 66.8 10.2 26 261-286 491-516 (716)
458 PRK02496 adk adenylate kinase; 96.7 0.0017 3.7E-08 61.1 4.0 29 266-294 3-31 (184)
459 TIGR01351 adk adenylate kinase 96.7 0.0016 3.5E-08 62.8 4.0 34 267-302 2-35 (210)
460 cd03215 ABC_Carb_Monos_II This 96.7 0.0083 1.8E-07 56.5 8.7 23 266-288 28-50 (182)
461 PRK09302 circadian clock prote 96.7 0.017 3.7E-07 63.3 12.4 107 260-376 269-406 (509)
462 PRK05703 flhF flagellar biosyn 96.6 0.013 2.8E-07 63.0 11.0 37 264-300 221-262 (424)
463 cd03227 ABC_Class2 ABC-type Cl 96.6 0.0084 1.8E-07 55.5 8.4 22 264-285 21-42 (162)
464 COG1118 CysA ABC-type sulfate/ 96.6 0.009 1.9E-07 60.9 9.0 21 266-286 30-50 (345)
465 PHA02624 large T antigen; Prov 96.6 0.0036 7.9E-08 69.2 6.7 116 265-399 432-560 (647)
466 PF10443 RNA12: RNA12 protein; 96.6 0.078 1.7E-06 56.6 16.3 35 266-302 19-55 (431)
467 cd03213 ABCG_EPDR ABCG transpo 96.6 0.016 3.4E-07 55.3 10.4 24 265-288 36-59 (194)
468 PF06414 Zeta_toxin: Zeta toxi 96.6 0.006 1.3E-07 58.4 7.4 42 262-303 13-55 (199)
469 PRK08099 bifunctional DNA-bind 96.6 0.0055 1.2E-07 65.3 7.8 39 264-302 219-257 (399)
470 PRK00279 adk adenylate kinase; 96.6 0.002 4.3E-08 62.5 4.1 34 267-302 3-36 (215)
471 COG4618 ArpD ABC-type protease 96.6 0.011 2.4E-07 63.8 9.7 84 311-415 478-564 (580)
472 cd03229 ABC_Class3 This class 96.6 0.0079 1.7E-07 56.4 7.9 102 266-380 28-162 (178)
473 TIGR03819 heli_sec_ATPase heli 96.6 0.0033 7.1E-08 65.6 5.8 68 265-332 179-262 (340)
474 PRK13541 cytochrome c biogenes 96.6 0.026 5.6E-07 53.7 11.5 24 265-288 27-50 (195)
475 COG2805 PilT Tfp pilus assembl 96.6 0.02 4.4E-07 58.2 11.1 92 264-376 124-230 (353)
476 PF13238 AAA_18: AAA domain; P 96.6 0.0017 3.6E-08 56.5 3.0 22 267-288 1-22 (129)
477 COG1936 Predicted nucleotide k 96.6 0.002 4.3E-08 60.5 3.5 30 266-296 2-31 (180)
478 PRK10867 signal recognition pa 96.5 0.03 6.4E-07 60.3 12.9 73 262-334 98-194 (433)
479 cd03269 ABC_putative_ATPase Th 96.5 0.022 4.7E-07 54.7 10.8 24 265-288 27-50 (210)
480 PF13245 AAA_19: Part of AAA d 96.5 0.0036 7.7E-08 51.0 4.6 31 267-297 13-50 (76)
481 PRK14737 gmk guanylate kinase; 96.5 0.0057 1.2E-07 58.3 6.6 26 263-288 3-28 (186)
482 COG2804 PulE Type II secretory 96.5 0.0068 1.5E-07 65.5 7.8 96 225-334 232-338 (500)
483 COG0467 RAD55 RecA-superfamily 96.5 0.012 2.5E-07 58.7 9.2 44 260-303 19-65 (260)
484 PRK01184 hypothetical protein; 96.5 0.0023 5E-08 60.1 3.8 34 266-302 3-36 (184)
485 PRK00889 adenylylsulfate kinas 96.5 0.011 2.3E-07 55.2 8.3 39 264-302 4-45 (175)
486 COG1136 SalX ABC-type antimicr 96.5 0.035 7.6E-07 54.6 12.1 68 312-399 149-216 (226)
487 PRK04182 cytidylate kinase; Pr 96.5 0.0025 5.5E-08 59.1 4.0 29 266-294 2-30 (180)
488 PF13479 AAA_24: AAA domain 96.5 0.0043 9.2E-08 60.3 5.6 67 264-335 3-80 (213)
489 PRK12337 2-phosphoglycerate ki 96.5 0.05 1.1E-06 58.8 14.1 73 395-474 386-458 (475)
490 PF13521 AAA_28: AAA domain; P 96.5 0.0027 5.8E-08 58.6 4.0 35 267-302 2-36 (163)
491 PF01583 APS_kinase: Adenylyls 96.5 0.0096 2.1E-07 55.3 7.6 40 264-303 2-44 (156)
492 COG2884 FtsE Predicted ATPase 96.5 0.013 2.9E-07 56.0 8.6 30 259-288 21-52 (223)
493 PRK12338 hypothetical protein; 96.5 0.062 1.3E-06 55.5 14.3 38 263-302 3-40 (319)
494 TIGR01425 SRP54_euk signal rec 96.5 0.032 7E-07 59.9 12.5 72 262-333 98-192 (429)
495 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.012 2.6E-07 61.8 9.1 66 266-333 136-222 (358)
496 TIGR01448 recD_rel helicase, p 96.5 0.0096 2.1E-07 68.1 9.0 97 266-379 340-455 (720)
497 cd03218 ABC_YhbG The ABC trans 96.4 0.014 3E-07 56.9 8.9 22 266-287 28-49 (232)
498 PRK09544 znuC high-affinity zi 96.4 0.015 3.2E-07 57.9 9.2 25 264-288 30-54 (251)
499 TIGR02173 cyt_kin_arch cytidyl 96.4 0.003 6.6E-08 58.1 3.9 28 267-294 3-30 (171)
500 COG3842 PotA ABC-type spermidi 96.4 0.0049 1.1E-07 64.4 5.8 20 267-286 34-53 (352)
No 1
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-81 Score=674.75 Aligned_cols=416 Identities=55% Similarity=0.864 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhhCCccEEEEeeCCeEEEEEecccccCcceeEEEEEcC--
Q 010809 66 KKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLP-- 143 (500)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (500)
+|++++++++.+++.+.. ..+.+++|++|+.++..++|++|.+..++.........+ ...++..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~f~~~~~~~~v~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~ 68 (596)
T COG0465 2 LWLLIAIVLIFLFNLFTN-------SSSKQVTYSQFIQLVSGGKVSSVSIKGDSKTVNLKLKDG------SKNTVYLPKG 68 (596)
T ss_pred chhHHHHHHHHHHHHhhh-------cccccccHHHHHHHHhcCCceEEEEcCCceEEEEEecCC------cceEEeecCC
Confidence 577777777777777652 234679999999999999999999976552322222221 12233344
Q ss_pred CCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccccccccccccc
Q 010809 144 GLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQME 223 (500)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (500)
..+..+...+..+++.+....+... +.|+.++++|++.+++++++||+++++..++ +|.+ .|+||+++++...+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lp~il~~~~~~~~~~r~~~~g---~g~~-~~~~gkskak~~~~ 142 (596)
T COG0465 69 VNDPNLVSFLDSNNITESGFIPEDN--SLLASLLSTWLPFILLIGLGWFFFRRQAQGG---GGGG-AFSFGKSKAKLYLE 142 (596)
T ss_pred cccHHHHHHHHhcCCcccccCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCc-ccCCChHHHHHhcc
Confidence 3467899999999987665554333 5677777777777777776666555443321 1212 79999999999988
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
....++|+|++|+|++|+++.|+|++|++|.+|.++|+++|+|++|+||||||||+||||+|+|+++||+++++|+|+++
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
|+|++++++|++|++|++++||||||||||+++++|+.+.+++++|++|++||||.+||+|..+.+|+||++||+|+.+|
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d 463 (500)
+||+|||||||+|.++.||..+|++|++.|+++.++++++++..+|+.|+||+|+|++|++|||+++|+|+++..|++.|
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~ 382 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRD 382 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCCCC-CChhhHHHHHhhhccccccC
Q 010809 464 IDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 464 ~~~Ai~~v~~g~~~~~~-~~~~ek~~~a~hE~gha~~~ 500 (500)
|++|++++++|++++++ +++++|+.+||||+|||+||
T Consensus 383 i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~ 420 (596)
T COG0465 383 IEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVG 420 (596)
T ss_pred hHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHH
Confidence 99999999999999986 79999999999999999985
No 2
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-72 Score=609.36 Aligned_cols=406 Identities=58% Similarity=0.912 Sum_probs=331.6
Q ss_pred CccccHHHHH-HHHhhCCccEEEEeeCCeEEEEEecccccCc--ceeEEEEEcCCCcHHHHHHHHh----cCcce-eecc
Q 010809 93 SSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGN--RVQRVRVQLPGLSQELLQKFRE----KNIDF-AAHN 164 (500)
Q Consensus 93 ~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~----~~~~~-~~~~ 164 (500)
..+++|.+|+ ++++.|.|.++.+...-....++........ ..+.+...+-. .+.+.++|.. -+++. ...+
T Consensus 163 ~~ei~~~df~~~~le~g~v~~~evv~~~~~~rv~~~~~~~~~~~~~~~~~~~i~~-v~~F~~kl~~a~~~l~~~~~~~~p 241 (774)
T KOG0731|consen 163 WQEITWRDFKQKLLEKGEVGKLEVVNPYAVVRVELDRGRIPGDRLIQKVWFNIRS-VDNFERKLDEAQRNLGIDTVVRVP 241 (774)
T ss_pred ceeeeHHHHHHHHhhccceeeEEeeccceeEEEEEeccccccccceeeEEEEecc-cchHHHHHHHHHHHhCCCceeEee
Confidence 4689999998 6899999999988642222222221111100 01222222221 2334444433 23321 1112
Q ss_pred CCCcchhhHHHHHHHHHHH-HHHHHHHHHHhhhccC-CCCCCCCCCCCcccccccc--cccccCCCCcCcccccCChHHH
Q 010809 165 AQEDSGSLLFNLIGNLAFP-LILIGGLFLLSRRSSG-GMGGPGGPGFPLAFGQSKA--KFQMEPNTGVTFDDVAGVDEAK 240 (500)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~dv~G~de~k 240 (500)
.... ....+......+.| +++++.++++.|++.+ +.+++|+..+++.|+.++. ++..+..++++|+||+|++++|
T Consensus 242 V~~~-~~~~~~~~~~~~~pti~~~~~l~~l~r~~~~~~~~~~gg~~g~~~f~~~ks~~k~~~~~~t~V~FkDVAG~deAK 320 (774)
T KOG0731|consen 242 VTYI-SESLLDLILGLLLPTILLLGGLLYLSRRSEGMGKGGPGGGLGPRLFGVSKSYKKFKNEGNTGVKFKDVAGVDEAK 320 (774)
T ss_pred eEEe-ecchhhhhhhhhhHHHHHHHhHheeeeecccccccCCccccCcceeeeccceeeeccCCCCCCccccccCcHHHH
Confidence 1111 11222333333455 7788888888888764 1223344445566665555 6777788889999999999999
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHH
Q 010809 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 320 (500)
Q Consensus 241 ~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~ 320 (500)
++|+|+|+||++|++|+++|+++|+|+||+||||||||+||||+|+|+++||+.+++|+|+++++|.+++++|++|..|+
T Consensus 321 ~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar 400 (774)
T KOG0731|consen 321 EELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR 400 (774)
T ss_pred HHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCeEEEEcCcchhhhcc-CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEec
Q 010809 321 ENAPCIVFVDEIDAVGRQR-GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r-~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~ 399 (500)
.++||||||||||+++++| +.+.+++++|++++|||||.+||+|....+|||+|+||+++.||++|+|||||||+|.++
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 9999999999999999999 445678999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCC
Q 010809 400 VPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGT 478 (500)
Q Consensus 400 ~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~ 478 (500)
+||..+|.+|++.|+++.+++ +++++..+|.+|+||+|+||+|+||+|++.|+|++...|+..|+++|+++++.|.+++
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~ 560 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKK 560 (774)
T ss_pred CCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhcccccc
Confidence 999999999999999999986 7788999999999999999999999999999999999999999999999999999887
Q ss_pred C-CCChhhHHHHHhhhccccccC
Q 010809 479 V-MTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 479 ~-~~~~~ek~~~a~hE~gha~~~ 500 (500)
. .++.++++++||||+|||+||
T Consensus 561 ~~~~~~~~~~~~a~~eagha~~g 583 (774)
T KOG0731|consen 561 SRVLSLEEKKTVAYHEAGHAVVG 583 (774)
T ss_pred chhcCHhhhhhhhhhhccchhhh
Confidence 6 568999999999999999986
No 3
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-72 Score=584.83 Aligned_cols=276 Identities=62% Similarity=0.943 Sum_probs=265.6
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.+...+++|+||.|+||+|++|+|+|+||++|++|.++|.+.|+||||+||||||||+||||+|+|+++|||+.++|+|-
T Consensus 295 p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 295 PEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 34456899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
++|||+|++++|++|..|+..+||||||||||++|.+|... ......|++||||.+||||..+.+||||++||.|+.
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~---~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~ 451 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPS---DQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEA 451 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCcc---HHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhh
Confidence 99999999999999999999999999999999999998652 222789999999999999999999999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (500)
||+||.||||||++|.+|.||.++|.+||+.|++++.++.++|+..||+.|+||+|+||+|++|.||+.|+.++...|+|
T Consensus 452 LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM 531 (752)
T KOG0734|consen 452 LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTM 531 (752)
T ss_pred hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcCCCCC-CChhhHHHHHhhhccccccC
Q 010809 462 KEIDDSIDRIVAGMEGTVM-TDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 462 ~d~~~Ai~~v~~g~~~~~~-~~~~ek~~~a~hE~gha~~~ 500 (500)
+|++.|.|+++||++++.+ ++++.++++||||+|||+||
T Consensus 532 ~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA 571 (752)
T KOG0734|consen 532 KHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVA 571 (752)
T ss_pred HHHhhhhhheeecccccccccChhhhhhhhhhccCceEEE
Confidence 9999999999999999986 58888999999999999986
No 4
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=4.3e-67 Score=576.41 Aligned_cols=406 Identities=72% Similarity=1.102 Sum_probs=357.2
Q ss_pred CCCccccHHHHHHHHhhCCccEEEEeeCCeEEEEEecccccCcceeEEEEEcCCCcHHHHHHHHhcCcceeeccCCCcch
Q 010809 91 VSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREKNIDFAAHNAQEDSG 170 (500)
Q Consensus 91 ~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 170 (500)
...++++||+|++++++|+|++|.+.+++....+....+..+..+.++.+..|..++++++.|.+++|++...+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-- 124 (638)
T CHL00176 47 KASSRMTYGRFLEYLDMGWIKKVDLYDNGRTAIVEASSPELGNRPQRIRVELPVGASELIQKLKEANIDFDAHPPVLK-- 124 (638)
T ss_pred CCCceecHHHHHHHHHcCCeeEEEEecCceEEEEeeccccCCCcceeEEEeCCCCCHHHHHHHHHcCCcEEecCCCcc--
Confidence 455679999999999999999999986654333332222212334556677775578999999999999988765443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccccccCCCCcCcccccCChHHHHHHHHHHHHh
Q 010809 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL 250 (500)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l 250 (500)
++|+..+.++++|++++++++|++.+....++ +.....++|+++++++.......++|+||+|++++|+++.++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~~~~k~~l~eiv~~l 202 (638)
T CHL00176 125 SNIVTILSNLLLPLILIGVLWFFFQRSSNFKG--GPGQNLMNFGKSKARFQMEADTGITFRDIAGIEEAKEEFEEVVSFL 202 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCcccccccchhHHHhhcccCCCCCHHhccChHHHHHHHHHHHHHH
Confidence 56777888888888887777665544322111 1112467899999888877788899999999999999999999999
Q ss_pred cChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEc
Q 010809 251 KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 251 ~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfID 330 (500)
++++.|..+|.+.|+|+||+||||||||++|+++|+++++||+++++++|.++++|.+.++++++|+.++..+|||||||
T Consensus 203 k~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfID 282 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFID 282 (638)
T ss_pred hCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHH
Q 010809 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (500)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL 410 (500)
|+|+++.+|+.+.++++++.++++++||.+||++..+.+++||++||+++.+|++++||||||+++.+++|+.++|.+||
T Consensus 283 EID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL 362 (638)
T CHL00176 283 EIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDIL 362 (638)
T ss_pred cchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHH
Confidence 99999999988777888999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCCCCChhhHHHHH
Q 010809 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 490 (500)
Q Consensus 411 ~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~~~~~~ek~~~a 490 (500)
+.|+++..+.+++++..+|..|+||+++||+++|++|++.|.++++..|+++||++|+++++.|.+++...++++|+++|
T Consensus 363 ~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~~~~~~~~vA 442 (638)
T CHL00176 363 KVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLEDSKNKRLIA 442 (638)
T ss_pred HHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccccHHHHHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999988777889999999
Q ss_pred hhhccccccC
Q 010809 491 YHEVGHAICG 500 (500)
Q Consensus 491 ~hE~gha~~~ 500 (500)
|||+|||+|+
T Consensus 443 ~hEaGhA~v~ 452 (638)
T CHL00176 443 YHEVGHAIVG 452 (638)
T ss_pred HHhhhhHHHH
Confidence 9999999985
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-64 Score=507.69 Aligned_cols=261 Identities=45% Similarity=0.763 Sum_probs=253.5
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
...+.++..|+++|+||.|+++++++++|.++. |++|+.|.++|+.+|+|||||||||||||+||||+|++.++.|+.+
T Consensus 137 V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 137 VSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred hheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence 334566788999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.+|+|+.+|+|+|+..+|++|+.|+.++||||||||||+++.+|....++++.|.++|+-+||++||||.+..+|-||+|
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred eCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 376 TN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
||+++.|||||+|||||||.|+||+||.++|.+||+.|.+++++.+++|++.+|+.++|+||+||+++|.||.++|.|+.
T Consensus 297 TNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 297 TNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred cCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHcCcCC
Q 010809 456 KAAISSKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 456 ~~~It~~d~~~Ai~~v~~g~~~ 477 (500)
+..||++||.+|+++++....+
T Consensus 377 R~~Vt~~DF~~Av~KV~~~~~~ 398 (406)
T COG1222 377 RDEVTMEDFLKAVEKVVKKKKK 398 (406)
T ss_pred cCeecHHHHHHHHHHHHhcccc
Confidence 9999999999999999876544
No 6
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=2.2e-58 Score=511.21 Aligned_cols=419 Identities=52% Similarity=0.827 Sum_probs=356.1
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCccccHHHHHHHHhhCCccEEEEeeCCeEEEEEecccccCcceeEEEEE
Q 010809 62 RGFLKKLVGNVGVGTALLGSGKAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQ 141 (500)
Q Consensus 62 rn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (500)
++++.|++++++++.++..+... ......++|+.|.+.+.++.+.++.+..+ ++. .. ..+ ...+...
T Consensus 3 ~~~L~~i~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~-tIK-~~--~~e----~~~~~~~ 69 (644)
T PRK10733 3 KNLILWLVIAVVLMSVFQSFGPS-----ESNGRKVDYSTFLQEVNQDQVREARINGR-EIN-VT--KKD----SNRYTTY 69 (644)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcC-----CCCcccCCHHHHHHHHHcCCeEEEEEeCC-EEE-EE--EcC----CceEEEe
Confidence 56778877777666655555331 12345799999999999999999988532 221 11 111 1234445
Q ss_pred cCCCcHHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCccccccccccc
Q 010809 142 LPGLSQELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQ 221 (500)
Q Consensus 142 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (500)
.|..++.+...+.++++.+...+.... .++..++..+.+.++++++++++.+++.+| ++...+.|++++..+.
T Consensus 70 ~~~~~~~l~~~l~~~~v~~~~~~~~~~--~~~~~i~~~~~~~il~ig~~~v~~g~mt~G-----~~~~l~af~~~~~~~~ 142 (644)
T PRK10733 70 IPVNDPKLLDNLLTKNVKVVGEPPEEP--SLLASIFISWFPMLLLIGVWIFFMRQMQGG-----GGKGAMSFGKSKARML 142 (644)
T ss_pred CCCCCHHHHHHHHHcCCeEEecCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-----CCceeEEecccccccc
Confidence 565567899999999999877654433 444444444444555555555666665543 1134678888888877
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.......+|+|+.|.+.+++++.+++++++++..|..++...|+|++|+||||||||++|+++|+++++||+.++++++.
T Consensus 143 ~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~ 222 (644)
T PRK10733 143 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 222 (644)
T ss_pred CchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhH
Confidence 77667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
+.+++.++..++++|+.++..+||||||||+|+++.+|+.+.++++++.+++++++|.+||++..+.+++||+|||+|+.
T Consensus 223 ~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~ 302 (644)
T PRK10733 223 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDV 302 (644)
T ss_pred HhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhh
Confidence 99999999999999999999999999999999999999888788889999999999999999999999999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (500)
||++++||||||+.+++++||.++|.+||+.|+++.++.+++++..+++.|+||||+||.++|++|+..|.++++..|++
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~ 382 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSM 382 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCcCCCC-CCChhhHHHHHhhhccccccC
Q 010809 462 KEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 462 ~d~~~Ai~~v~~g~~~~~-~~~~~ek~~~a~hE~gha~~~ 500 (500)
.||++|++++..|.+++. ..++++++.+||||+|||+|+
T Consensus 383 ~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~ 422 (644)
T PRK10733 383 VEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIG 422 (644)
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999988765 467889999999999999974
No 7
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.7e-54 Score=466.74 Aligned_cols=322 Identities=68% Similarity=1.107 Sum_probs=293.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HhhhccCCCCCCCCCCCCcccccccccccccCCCCcCcccccCChHHHHHHHHHHHHhc
Q 010809 173 LFNLIGNLAFPLILIGGLFL-LSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK 251 (500)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~ 251 (500)
|.+++.++.+|+++++..|+ +.+++.++ | +..+.++++++++.....+.++|+||+|++++|+++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~ 75 (495)
T TIGR01241 2 LLGFLFSLLPPILLLVGVWFFFRRQMQGG----G--GRAFSFGKSKAKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLK 75 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----C--CCCcCCCCCccccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 45566666676666655554 55555543 1 33467889999999888999999999999999999999999999
Q ss_pred ChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcC
Q 010809 252 KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 252 ~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
+++.|...|.+.|+|+||+||||||||++|+++|+++++||++++++++.+.++|.+.+.++++|+.++..+||||||||
T Consensus 76 ~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDE 155 (495)
T TIGR01241 76 NPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDE 155 (495)
T ss_pred CHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHH
Q 010809 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (500)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~ 411 (500)
||.++.+++.+.++++++..+++++||.+||++..+.+++||+|||+++.+|++++||||||+.++++.|+.++|.+||+
T Consensus 156 id~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 156 IDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILK 235 (495)
T ss_pred hhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHH
Confidence 99999988876666788889999999999999988889999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCC-CCChhhHHHHH
Q 010809 412 VHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVA 490 (500)
Q Consensus 412 ~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~-~~~~~ek~~~a 490 (500)
.++++.++..+.++..++..+.||+++||+++|++|+..|.++++..|+.+||++|++++..|.+++. ..++++++.+|
T Consensus 236 ~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A 315 (495)
T TIGR01241 236 VHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVA 315 (495)
T ss_pred HHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence 99999888888899999999999999999999999999999999999999999999999999987654 46889999999
Q ss_pred hhhccccccC
Q 010809 491 YHEVGHAICG 500 (500)
Q Consensus 491 ~hE~gha~~~ 500 (500)
|||+|||||+
T Consensus 316 ~hEaGhAlv~ 325 (495)
T TIGR01241 316 YHEAGHALVG 325 (495)
T ss_pred HHHHhHHHHH
Confidence 9999999874
No 8
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-52 Score=441.42 Aligned_cols=247 Identities=45% Similarity=0.782 Sum_probs=236.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.+.++++|+||.|++++|++|++.|.| +++|+.|.++|..+|+|||||||||||||++|||+|++++.+|+++.+.++.
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~ 505 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELF 505 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHH
Confidence 566899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
++|+|++++.+|++|++|+..+|||||+||||+++..|+.+. +.-.+++|++||+||||+....+|+|||+||+|+.
T Consensus 506 sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~---~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ 582 (693)
T KOG0730|consen 506 SKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSS---SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDM 582 (693)
T ss_pred HHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCc---cchHHHHHHHHHHHcccccccCcEEEEeccCChhh
Confidence 999999999999999999999999999999999999997432 25678999999999999999999999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--CCCc
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG--KAAI 459 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~--~~~I 459 (500)
||+||+||||||+.|+||+||.+.|.+||+.+++++++.+++|++.||..|+||||+||.++|++|+..|.++. ...|
T Consensus 583 ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i 662 (693)
T KOG0730|consen 583 IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEATEI 662 (693)
T ss_pred cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999985 4679
Q ss_pred CHHHHHHHHHHHH
Q 010809 460 SSKEIDDSIDRIV 472 (500)
Q Consensus 460 t~~d~~~Ai~~v~ 472 (500)
+.+||++|+..+.
T Consensus 663 ~~~hf~~al~~~r 675 (693)
T KOG0730|consen 663 TWQHFEEALKAVR 675 (693)
T ss_pred cHHHHHHHHHhhc
Confidence 9999999999754
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-51 Score=391.78 Aligned_cols=319 Identities=34% Similarity=0.580 Sum_probs=288.2
Q ss_pred HHHHHHHHhcCcceeeccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccccccCCC
Q 010809 147 QELLQKFREKNIDFAAHNAQEDSGSLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNT 226 (500)
Q Consensus 147 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (500)
..+++...++.--+..... +++++.+++.+.--++.....+.+.|.++.-.+ -.|...+.|-..+....+|
T Consensus 80 gqfle~vdqnt~ivgsttg----sny~vrilstidrellkps~svalhrhsnalvd-----vlppeadssi~ml~~~ekp 150 (408)
T KOG0727|consen 80 GQFLEAVDQNTAIVGSTTG----SNYYVRILSTIDRELLKPSASVALHRHSNALVD-----VLPPEADSSISMLGPDEKP 150 (408)
T ss_pred HHHHHhhhccCceeecccC----CceEEeehhhhhHHHcCCccchhhhhcccceee-----ccCCcccccccccCCCCCC
Confidence 3556666555444443332 278888999888888888888888888765422 2333445555556667789
Q ss_pred CcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
++++.||.|+|-.|++++|.++. +.+.+.|.+.|+.+|+|||||||||||||+||+|+|+.....|+.+.+|+|+.+|.
T Consensus 151 dvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchh
Q 010809 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA 385 (500)
Q Consensus 306 G~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~a 385 (500)
|+|...+|++|+.|++++|+||||||+|++..+|.....|.+.|.+++|-+||++||||....++-||++||+.+.|||+
T Consensus 231 gegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpa 310 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPA 310 (408)
T ss_pred ccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 386 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 386 LlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
|+||||+||.|++|+||.++++-++.....++++++++|++.+..+.+..|++||..+|++|.++|.|+++-.|...||+
T Consensus 311 llrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nryvvl~kd~e 390 (408)
T KOG0727|consen 311 LLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENRYVVLQKDFE 390 (408)
T ss_pred hcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcceeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcC
Q 010809 466 DSIDRIVAG 474 (500)
Q Consensus 466 ~Ai~~v~~g 474 (500)
+|...++..
T Consensus 391 ~ay~~~vk~ 399 (408)
T KOG0727|consen 391 KAYKTVVKK 399 (408)
T ss_pred HHHHhhcCC
Confidence 999987543
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-50 Score=394.69 Aligned_cols=300 Identities=34% Similarity=0.612 Sum_probs=271.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCcccccccccccccCCCCcCcccccCChHHHHHHHHHHHH-
Q 010809 171 SLLFNLIGNLAFPLILIGGLFLLSRRSSGGMGGPGGPGFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF- 249 (500)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~- 249 (500)
.+++++++.+..-+|-.++.+++..+.....|-.-....|| ..-+..++.|.-+|+|+.|++.+.++++|.++.
T Consensus 130 e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpm-----v~vmK~eKaP~Ety~diGGle~QiQEiKEsvELP 204 (440)
T KOG0726|consen 130 EYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPM-----VSVMKVEKAPQETYADIGGLESQIQEIKESVELP 204 (440)
T ss_pred hheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCcc-----ceeeecccCchhhhcccccHHHHHHHHHHhhcCC
Confidence 56777877777777777777776554333222111112232 223345677788999999999999999999999
Q ss_pred hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEE
Q 010809 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 250 l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfI 329 (500)
|.+|+.|..+|+++|+||+|||+||||||+||+|+|+.....|+.+.+|+++.+|.|.|++.+|++|+-|..++|+|+||
T Consensus 205 LthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~apSIvFi 284 (440)
T KOG0726|consen 205 LTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFI 284 (440)
T ss_pred CCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHH
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I 409 (500)
||||++|.+|-...+++..|.++++.+||+++|||.++..|-||++||+.+.|||+|.||||+||.|+|+.||...++.|
T Consensus 285 DEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkI 364 (440)
T KOG0726|consen 285 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKI 364 (440)
T ss_pred ehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhcee
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCc
Q 010809 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 410 L~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~ 475 (500)
|..|..++.+..+++++.+...-+.+||+||..+|.+|.++|.|+.+..|+++||++|.++++...
T Consensus 365 f~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 365 FQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred EEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 999999999999999999999989999999999999999999999999999999999999997654
No 11
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-49 Score=414.22 Aligned_cols=247 Identities=44% Similarity=0.756 Sum_probs=232.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
-|+++|+||.++++++.+|...+.+ +++|+.|.++|...|.|||||||||||||+||||+|+|++.+|+.|.+.++.++
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk 584 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK 584 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH
Confidence 4789999999999999999998888 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
|||+.+..+|.+|..|+..+|||||+||+|+|+.+|+.+ +.....+.+||||+||||...+.+|.||+|||+||.+|
T Consensus 585 YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~---~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 585 YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE---GSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC---CchhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 999999999999999999999999999999999999874 35567799999999999999999999999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhc--CCCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHcC----
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRRG---- 455 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~--~~~l~~dvdl~~la~~t~--G~sgadL~~lv~eAa~~A~r~~---- 455 (500)
||++||||||+.++|++|+.++|.+||+.+.+ +.+++.|+|++.||+.+. ||+|+||+.+|++|++.|.++.
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~ 741 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRESLFEI 741 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999 778999999999999877 9999999999999999998862
Q ss_pred ------------CCCcCHHHHHHHHHHHHcC
Q 010809 456 ------------KAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 456 ------------~~~It~~d~~~Ai~~v~~g 474 (500)
...+++.||++|+.++...
T Consensus 742 ~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pS 772 (802)
T KOG0733|consen 742 DSSEDDVTVRSSTIIVTYKHFEEAFQRIRPS 772 (802)
T ss_pred cccCcccceeeeeeeecHHHHHHHHHhcCCC
Confidence 1246788999999987544
No 12
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-49 Score=382.14 Aligned_cols=270 Identities=41% Similarity=0.708 Sum_probs=258.7
Q ss_pred CcccccccccccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 210 PLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
|...+.|...++++..|+++++||.|+.+..+.++|+++. +-+|++|..+|+.+|+|||+|||||||||++|+|+|+..
T Consensus 156 ppkidpsvtmm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt 235 (435)
T KOG0729|consen 156 PPKIDPSVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT 235 (435)
T ss_pred CCCCCCceeEEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc
Confidence 3455667777888999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010809 289 GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (500)
Q Consensus 289 ~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~ 368 (500)
+..|+.+-+|+++.+|+|+|+..+|++|+.|+...-||||+||||++++.|..+..+++.|.++++.+|++++|||.++.
T Consensus 236 dacfirvigselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg 315 (435)
T KOG0729|consen 236 DACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG 315 (435)
T ss_pred CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999998999999999999999988877889999999999999999999999
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa 448 (500)
++-|+.+||+|+.|||+|+||||+||.++|.+||.++|..||+.|.+.+....++-++.+|+.++.-+|++|+.+|.+|.
T Consensus 316 nikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteag 395 (435)
T KOG0729|consen 316 NIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAG 395 (435)
T ss_pred CeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCcCHHHHHHHHHHHHcCcCCCC
Q 010809 449 ILAGRRGKAAISSKEIDDSIDRIVAGMEGTV 479 (500)
Q Consensus 449 ~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~ 479 (500)
++|++..++..|..||.+|+++++.|-.+-+
T Consensus 396 mfairarrk~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 396 MFAIRARRKVATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998877643
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-48 Score=373.71 Aligned_cols=256 Identities=41% Similarity=0.714 Sum_probs=247.4
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
+++-|+.+++-|.|.+.+.++++|+++. .++|+.|..+|+..|+|+|||||||||||+||+|+|....+.|+.++++++
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgsel 217 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSEL 217 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHH
Confidence 3455677899999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
+.+|.|+|...+|++|-.|+.++|+|||.||||.+|..|..+.+|++.|.++++.+||+++|||+...++-||.+||+.+
T Consensus 218 vqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnrid 297 (404)
T KOG0728|consen 218 VQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRID 297 (404)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccc
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (500)
.||++|+||||+||.|+||+|+.+.|.+||+.|.+++++...+++..+|...+|.||+++..+|.+|.++|.|+.+-.||
T Consensus 298 ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvt 377 (404)
T KOG0728|consen 298 ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVT 377 (404)
T ss_pred cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCC
Q 010809 461 SKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 461 ~~d~~~Ai~~v~~g~~~ 477 (500)
++||+-|+.+++.....
T Consensus 378 qedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 378 QEDFEMAVAKVMQKDSE 394 (404)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999999865433
No 14
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-48 Score=372.35 Aligned_cols=255 Identities=38% Similarity=0.692 Sum_probs=245.5
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s 298 (500)
+.+...|.-+++||.|++.+.++|.+.+-. +.++++|..+|+++|+|+|+|||||||||++|||.|...+..|+.+.+.
T Consensus 160 MevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgP 239 (424)
T KOG0652|consen 160 MEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGP 239 (424)
T ss_pred eeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcch
Confidence 445667788999999999999999997766 9999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
.++.||.|.|++.+|+.|..|+..+|+||||||+|++|.+|..+...|+.|.++++.+||+++|||.++..+-||++||+
T Consensus 240 QLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNR 319 (424)
T KOG0652|consen 240 QLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNR 319 (424)
T ss_pred HHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeeccc
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (500)
.+.|||+|+|+||+||.|+||.|+.+.|.+|++.|.++++.+++++++++|+.|++|+|++...+|-+|.+.|.|++...
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~ate 399 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATE 399 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcC
Q 010809 459 ISSKEIDDSIDRIVAG 474 (500)
Q Consensus 459 It~~d~~~Ai~~v~~g 474 (500)
|+.+||.+++..+...
T Consensus 400 v~heDfmegI~eVqak 415 (424)
T KOG0652|consen 400 VTHEDFMEGILEVQAK 415 (424)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999887643
No 15
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=391.80 Aligned_cols=228 Identities=46% Similarity=0.778 Sum_probs=216.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+.++++|+|+.|++....+|.+++..+++|+.|..+|..+|+|||||||||||||.||+|+|+++++||+.|++.+++..
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC----CCeEEEEeeCCC
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN----TGIIVIAATNRA 379 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~----~~viVIaaTN~~ 379 (500)
+.|++++++|++|++|+..+|||+||||||+++++|.. ++.+-..+++.|||..||++... .+|+||+|||+|
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh---HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999975 23333458899999999998654 579999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
|.||++|+|+||||+.|.+..|+..+|.+||+..++++.++.++|+..||+.|+||.|+||..+|.+|+..|.++
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887
No 16
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=5e-45 Score=421.22 Aligned_cols=235 Identities=20% Similarity=0.317 Sum_probs=204.8
Q ss_pred hhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh------------------------------
Q 010809 255 RFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF------------------------------ 304 (500)
Q Consensus 255 ~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~------------------------------ 304 (500)
.+.++|+++|+||||+||||||||+||||+|+++++||+.+++++|++.+
T Consensus 1621 ~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e 1700 (2281)
T CHL00206 1621 FSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTE 1700 (2281)
T ss_pred HHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchh
Confidence 34678999999999999999999999999999999999999999998643
Q ss_pred -------------hhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC---CCC
Q 010809 305 -------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---GNT 368 (500)
Q Consensus 305 -------------vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~---~~~ 368 (500)
+++++.+++.+|+.|++.+||||||||||+++.+ ++...++++|+++|++.. ...
T Consensus 1701 ~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~---------ds~~ltL~qLLneLDg~~~~~s~~ 1771 (2281)
T CHL00206 1701 LLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN---------ESNYLSLGLLVNSLSRDCERCSTR 1771 (2281)
T ss_pred hhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC---------ccceehHHHHHHHhccccccCCCC
Confidence 2234456999999999999999999999999754 233457999999999864 456
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHH--hcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH--GSNKKFDAD-VSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~--l~~~~l~~d-vdl~~la~~t~G~sgadL~~lv~ 445 (500)
+|+||||||+|+.|||||+||||||+.|+|+.|+..+|++++..+ .++..+..+ +++..+|+.|+||+||||+++||
T Consensus 1772 ~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvN 1851 (2281)
T CHL00206 1772 NILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTN 1851 (2281)
T ss_pred CEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHH
Confidence 899999999999999999999999999999999999999988854 455666544 57999999999999999999999
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCCCCChhhHHHHHhhhccccccC
Q 010809 446 EAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 446 eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~~~~~~ek~~~a~hE~gha~~~ 500 (500)
||++.|+++++..|++++++.|++++++|.+.+.. +..+++ ++|||+|||+|+
T Consensus 1852 EAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~-~~~~~~-ia~yEiGhAvvq 1904 (2281)
T CHL00206 1852 EALSISITQKKSIIDTNTIRSALHRQTWDLRSQVR-SVQDHG-ILFYQIGRAVAQ 1904 (2281)
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhccc-Ccchhh-hhhhHHhHHHHH
Confidence 99999999999999999999999999999876643 333333 699999999985
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.7e-44 Score=374.99 Aligned_cols=255 Identities=42% Similarity=0.689 Sum_probs=240.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
.....|+++|+||+|++.+|+++++.++. +.+|+.|.++|..+|+|+||+||||||||++|+++|++.+.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 34557889999999999999999999986 89999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
+..+|+|.++..++++|..++..+||||||||+|.++.+|.....+.+.+.++++.+++.++|++....+++||++||++
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~ 294 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRA 294 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCc
Confidence 99999999999999999999999999999999999998886555555677889999999999999888899999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~I 459 (500)
+.+|++++||||||+.|++++|+.++|.+||+.++.+.++..++++..++..|+||||+||.++|++|++.|.++++..|
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i 374 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNRYVI 374 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCc
Q 010809 460 SSKEIDDSIDRIVAGM 475 (500)
Q Consensus 460 t~~d~~~Ai~~v~~g~ 475 (500)
+++||++|+++++.+.
T Consensus 375 ~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 375 LPKDFEKGYKTVVRKT 390 (398)
T ss_pred CHHHHHHHHHHHHhcc
Confidence 9999999999987653
No 18
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.2e-44 Score=347.57 Aligned_cols=242 Identities=38% Similarity=0.662 Sum_probs=224.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..++++|+||+|++++|+..+-++++|.+|++|..+ .|++||+|||||||||++|+|+|+++++|++.+.+.+++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 3457899999999999999999999999999998877 4789999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
.++|.++.+++++|+.|++.+|||+||||+|+++-.|.-..-.| ...+.+|.||++||++..+.+|+.||+||+|+.|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRG--DVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRG--DVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcc--cHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 99999999999999999999999999999999976654321111 2457899999999999999999999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHH-HHHHHHHHHHHHcCCCCcCH
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLA-NLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~-~lv~eAa~~A~r~~~~~It~ 461 (500)
|+++++ ||...|+|.+|+.++|.+|++.+++..++.-+.++..++..|.|+||+||. .++..|...|..++++.|+.
T Consensus 268 D~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~ 345 (368)
T COG1223 268 DPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDREKVER 345 (368)
T ss_pred CHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhchhhhhH
Confidence 999999 999999999999999999999999999999999999999999999999995 68889999999999999999
Q ss_pred HHHHHHHHHH
Q 010809 462 KEIDDSIDRI 471 (500)
Q Consensus 462 ~d~~~Ai~~v 471 (500)
+|++.|+++.
T Consensus 346 edie~al~k~ 355 (368)
T COG1223 346 EDIEKALKKE 355 (368)
T ss_pred HHHHHHHHhh
Confidence 9999999983
No 19
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-44 Score=362.30 Aligned_cols=246 Identities=37% Similarity=0.631 Sum_probs=225.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
...++++|+||+|++++|+-|+|+|-. +..|+.|+. ..++++|||++||||||||+||||+|.|++..||.|+.+.+.
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~G-irrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstlt 282 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKG-IRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLT 282 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhh-cccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhh
Confidence 356789999999999999999998877 888886663 467789999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC-CC---eEEEEeeC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TG---IIVIAATN 377 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~-~~---viVIaaTN 377 (500)
++|.|++++.+|-+|+.|+..+|++|||||||+|+.+|+. .+.|+...+.-++||.+|||.... .+ |.|+|+||
T Consensus 283 SKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~--s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN 360 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGG--SSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATN 360 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCC--ccchhHHHHHHHHHHHHhhccccccccceeEEEEeccC
Confidence 9999999999999999999999999999999999999977 366888889999999999998653 23 88999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-- 455 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~-- 455 (500)
.|+.||+|++| ||.+.|+||+||.++|..+++..++....+++++++.++..++||||+||.++|++|++++.|+.
T Consensus 361 ~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 361 FPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred CCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred ---------------CCCcCHHHHHHHHHHHHc
Q 010809 456 ---------------KAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 456 ---------------~~~It~~d~~~Ai~~v~~ 473 (500)
+..|+++||++|+.++..
T Consensus 439 g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 439 GLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred cCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 234788999999988643
No 20
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=9.9e-43 Score=365.83 Aligned_cols=258 Identities=46% Similarity=0.754 Sum_probs=243.1
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
.....++++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+++||+||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 34566789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
+...|+|.++..++.+|+.++..+||||||||+|.++.+++.+..++..+.++++.+++.+++++....++.||+|||++
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~ 280 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRI 280 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCCh
Confidence 99999999999999999999999999999999999998887665566778889999999999999888899999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~I 459 (500)
+.+|++++||||||+.+++++|+.++|.+||+.++++..+..++++..++..|+||+|+||+++|++|+..|.+++...|
T Consensus 281 ~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~~~~i 360 (389)
T PRK03992 281 DILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDDRTEV 360 (389)
T ss_pred hhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcCcCCC
Q 010809 460 SSKEIDDSIDRIVAGMEGT 478 (500)
Q Consensus 460 t~~d~~~Ai~~v~~g~~~~ 478 (500)
+.+||.+|++++..+.++.
T Consensus 361 ~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 361 TMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred CHHHHHHHHHHHhcccccc
Confidence 9999999999997766555
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-43 Score=376.40 Aligned_cols=250 Identities=39% Similarity=0.701 Sum_probs=226.0
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
..+-|+++|+||.|.+++|.++.+-++. |++|+.|. .|.+...|||||||||||||++|||+|.|+...|++|.+.|+
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfs-sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPEL 741 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFS-SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPEL 741 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhh-ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHH
Confidence 3456899999999999999999999998 99999876 467767799999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEeeCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNR 378 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--~~~~viVIaaTN~ 378 (500)
.+||+|++++++|++|++||..+|||||+||+|.++++||....+| .-..+++.|||.|||++. +..+|.||+||||
T Consensus 742 LNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 742 LNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 9999999999999999999999999999999999999998753322 246789999999999998 4678999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCC-HHHHHHHHHHHhcCCCCCccccHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHcC-
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSNKKFDADVSLDVIAMRTP-GFSGADLANLLNEAAILAGRRG- 455 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd-~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~-G~sgadL~~lv~eAa~~A~r~~- 455 (500)
||.|||+|+||||||+-+++..++ .+.+..+|+...++..+++++|+..+|+.++ .|+|+|+=.+|-.|.+.|++|.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i 900 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTI 900 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999885 5568889999999999999999999999875 6999999999999999998862
Q ss_pred ----------------CCCcCHHHHHHHHHHHHc
Q 010809 456 ----------------KAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 456 ----------------~~~It~~d~~~Ai~~v~~ 473 (500)
.-.|+++||.++.++...
T Consensus 901 ~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 901 HDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 124899999999998643
No 22
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=366.88 Aligned_cols=254 Identities=39% Similarity=0.705 Sum_probs=241.1
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
..+..|.++|+||.|++++++++.++++. +.+|+.|..+|..+|+++||+||||||||++|+++|++++.+|+.+.+++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 34566789999999999999999999987 99999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
+...|+|.++..++.+|..++...||||||||||+++.+|....+++..+.++++.++|.++|++....++.||++||++
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~ 332 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRI 332 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCCh
Confidence 99999999999999999999999999999999999998887666667778889999999999999888899999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAI 459 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~I 459 (500)
+.+|++++||||||+.|+|+.||.++|.+||+.++.+..+..+++++.++..++||+|+||+++|++|++.|.++++..|
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~V 412 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKV 412 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHcC
Q 010809 460 SSKEIDDSIDRIVAG 474 (500)
Q Consensus 460 t~~d~~~Ai~~v~~g 474 (500)
+.+||++|+++++..
T Consensus 413 t~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 413 TQADFRKAKEKVLYR 427 (438)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998654
No 23
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=5.2e-40 Score=342.49 Aligned_cols=252 Identities=47% Similarity=0.780 Sum_probs=237.0
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s 298 (500)
+.....+.++|+||+|++++++++.+.+.. +.+|+.|..+|..+|+|+||+||||||||++|+++|++++.+|+.+.++
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 344566789999999999999999999987 8999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++...+.|.+...++.+|+.++...|+||||||+|.++.++.....++..+.++++.+++.+++++....++.||+|||+
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~ 270 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNR 270 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999887765556677788999999999999887788999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (500)
++.+|++++||||||+.++++.|+.++|.+||+.++.+..+..++++..++..++||+|+||.++|++|+..|.++++..
T Consensus 271 ~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~~~~ 350 (364)
T TIGR01242 271 PDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREERDY 350 (364)
T ss_pred hhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 010809 459 ISSKEIDDSIDRI 471 (500)
Q Consensus 459 It~~d~~~Ai~~v 471 (500)
|+.+||.+|++++
T Consensus 351 i~~~d~~~a~~~~ 363 (364)
T TIGR01242 351 VTMDDFIKAVEKV 363 (364)
T ss_pred cCHHHHHHHHHHh
Confidence 9999999999986
No 24
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-41 Score=335.79 Aligned_cols=250 Identities=39% Similarity=0.677 Sum_probs=240.3
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
+....++|+++.|.-++..++++.++. +.+|+.|.++|+++|++++||||||||||++|+++|...+++|+.++.++++
T Consensus 124 e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv 203 (388)
T KOG0651|consen 124 EDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALV 203 (388)
T ss_pred cCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhh
Confidence 445578999999999999999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
+++.|+.+..+|+.|..|+...|||||+||||++++.+.......+.+.++||-+|+++|++|.....|-+|+|||+|+.
T Consensus 204 ~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 204 DKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDT 283 (388)
T ss_pred hhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccc
Confidence 99999999999999999999999999999999999999776677888999999999999999999999999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (500)
|||+|+||||+|+.+++|+|....|..|++.|...+....++|.+.+.+..+||+|+|++|.|.||...|++..+..+-+
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~~~vl~ 363 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEERDEVLH 363 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhhHHHhH
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 010809 462 KEIDDSIDRIV 472 (500)
Q Consensus 462 ~d~~~Ai~~v~ 472 (500)
+|+-.++.++-
T Consensus 364 Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 364 EDFMKLVRKQA 374 (388)
T ss_pred HHHHHHHHHHH
Confidence 99999998864
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-40 Score=356.21 Aligned_cols=245 Identities=48% Similarity=0.790 Sum_probs=230.2
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..+.++|+|+.|++++|+.+++.+++ ++.++.|...|.++|+++|||||||||||+||+|+|.+.+.+|+.+.++++..
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 45689999999999999999999999 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
+|+|+.++.++.+|..|++.+||||||||+|++...|+.+. +....+.+++++.+|++.+...+|+||++||+|+.+
T Consensus 315 k~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~---~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~l 391 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE---DGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDL 391 (494)
T ss_pred cccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC---chHHHHHHHHHHHHhcCCCccCceEEEecCCCcccc
Confidence 99999999999999999999999999999999999886532 222368999999999999999999999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC--CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-CCCc
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-KAAI 459 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~--l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~-~~~I 459 (500)
|++++||||||+.+++++||.++|.+|++.|++... +..++++..+++.|+||+|+||.++|.+|++.+.++. ...|
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~ 471 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREV 471 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999544 4688999999999999999999999999999999998 7889
Q ss_pred CHHHHHHHHHHH
Q 010809 460 SSKEIDDSIDRI 471 (500)
Q Consensus 460 t~~d~~~Ai~~v 471 (500)
+++||.+|+.++
T Consensus 472 ~~~~~~~a~~~~ 483 (494)
T COG0464 472 TLDDFLDALKKI 483 (494)
T ss_pred cHHHHHHHHHhc
Confidence 999999999983
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.2e-40 Score=370.49 Aligned_cols=246 Identities=45% Similarity=0.765 Sum_probs=229.6
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.+.++|+||+|++++|++|.+.+.+ +++++.|..+|.+.|+|+|||||||||||++|+++|++++.+|+.++++++..+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 4678999999999999999999997 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
|+|.++..++.+|+.|+..+||||||||+|+++..|+.+. .....++.+++||.+||++....+++||+|||+++.||
T Consensus 527 ~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~--~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld 604 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF--DTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILD 604 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC--CccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCC
Confidence 9999999999999999999999999999999998886532 23356789999999999998888999999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~-------- 455 (500)
++++||||||+.+++++||.++|.+||+.+.++.++.+++++..+|..|+||||+||.++|++|++.|.++.
T Consensus 605 ~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~ 684 (733)
T TIGR01243 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEK 684 (733)
T ss_pred HhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999998842
Q ss_pred ----------CCCcCHHHHHHHHHHHH
Q 010809 456 ----------KAAISSKEIDDSIDRIV 472 (500)
Q Consensus 456 ----------~~~It~~d~~~Ai~~v~ 472 (500)
...|+++||.+|+.++.
T Consensus 685 ~~~~~~~~~~~~~i~~~~f~~al~~~~ 711 (733)
T TIGR01243 685 LEVGEEEFLKDLKVEMRHFLEALKKVK 711 (733)
T ss_pred hhcccccccccCcccHHHHHHHHHHcC
Confidence 12699999999999754
No 27
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=347.21 Aligned_cols=228 Identities=44% Similarity=0.756 Sum_probs=217.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..++.|+||.|+.++|+.+++.+++ -+.|..|...+.+.+.|||||||||||||+||-|+|...+..|+.+.+.++..
T Consensus 660 k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~ 739 (952)
T KOG0735|consen 660 KSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS 739 (952)
T ss_pred ccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH
Confidence 34458999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
+|.|.+++.+|++|+.|+..+|||+|+||+|.++++||-+..|-. .+.+||||++|||.+.-.||.|+|+|.|||.+
T Consensus 740 KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVT---DRVVNQlLTelDG~Egl~GV~i~aaTsRpdli 816 (952)
T KOG0735|consen 740 KYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVT---DRVVNQLLTELDGAEGLDGVYILAATSRPDLI 816 (952)
T ss_pred HHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCch---HHHHHHHHHhhccccccceEEEEEecCCcccc
Confidence 999999999999999999999999999999999999987665544 57899999999999999999999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
||||+||||+|+.++-+.|+..+|.+|++...+......++|++.+|..|+||+|+||..++..|.+.|..+
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888664
No 28
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.2e-38 Score=339.66 Aligned_cols=242 Identities=26% Similarity=0.458 Sum_probs=214.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
.++.+|+||.|++.+|+.+.+....+ +..+...|.+.|+|+||+||||||||++|+++|++.+.||+.++++.+..++
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~--~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF--SKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh--hHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 45789999999999999998866543 2345667999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch
Q 010809 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 305 vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~ 384 (500)
+|.++.+++++|+.++..+||||||||||.++..+... +......+.+++++..|+. .+.+++||+|||+++.||+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~--~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK--GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC--CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999997654331 2334567889999999884 3567999999999999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC--ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD--ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~--~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (500)
+++|+||||+.+++++|+.++|.+||+.|+++.... .+.+++.++..|+||||+||+++|++|+..|..+++ .++.+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~ 454 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTD 454 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHH
Confidence 999999999999999999999999999999886532 478899999999999999999999999999987775 59999
Q ss_pred HHHHHHHHHHc
Q 010809 463 EIDDSIDRIVA 473 (500)
Q Consensus 463 d~~~Ai~~v~~ 473 (500)
||..|+.++..
T Consensus 455 dl~~a~~~~~P 465 (489)
T CHL00195 455 DILLALKQFIP 465 (489)
T ss_pred HHHHHHHhcCC
Confidence 99999998763
No 29
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-40 Score=321.50 Aligned_cols=227 Identities=35% Similarity=0.632 Sum_probs=206.8
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
....|++.|+||+|++.+|+.|+|.|-. ++.|+.|.. +.++++|+||||||||||+.||+|+|.|++-.||+++.|++
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtG-kR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDL 202 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTG-KRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDL 202 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcC-CCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHH
Confidence 3467899999999999999999998877 888887762 34567899999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRA 379 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~~ 379 (500)
+++|+|++++.++++|+.|+++.|+||||||||.+|+.|+. +.++...++-.++|.+|.|... +.+++|+++||-|
T Consensus 203 vSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e---nEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 203 VSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE---NESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC---CchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 99999999999999999999999999999999999998876 3456677888999999999865 4689999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
+.||.+++| ||+++|++|+|+...|..+++.|+...+.. .+.|+..+++.|+||||+||.-+|+.|.+.-.|+
T Consensus 280 w~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRk 353 (439)
T KOG0739|consen 280 WVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRK 353 (439)
T ss_pred hhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHH
Confidence 999999999 999999999999999999999999887654 5678999999999999999999999998877765
No 30
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=321.48 Aligned_cols=244 Identities=39% Similarity=0.618 Sum_probs=222.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G-~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
-.++|+||.|++++++++++.|-. ++.|+.|..-+ .++|+||||+||||||||++|+|+|++++.+|+.++.+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 468999999999999999999888 99999986322 4678999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC--eEEEEeeCCCCC
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG--IIVIAATNRADI 381 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~--viVIaaTN~~~~ 381 (500)
|.|++.+.++.+|..|.+-+||||||||+|.+.+.|. ++.|+....+-+|+....||+.++.+ |+|++|||+|..
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~---s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR---STDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc---cchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 9999999999999999999999999999999999884 35677777888999999999988765 999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc----C--
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----G-- 455 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~----~-- 455 (500)
||.|++| |+.++++|+.|+.++|++||++.+++.++++++|+..+|..|.||||.||.++|..|++..+|+ +
T Consensus 244 lDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~ 321 (386)
T KOG0737|consen 244 LDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETG 321 (386)
T ss_pred HHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhccc
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999887764 1
Q ss_pred ----------------------CCCcCHHHHHHHHHHHHcC
Q 010809 456 ----------------------KAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 456 ----------------------~~~It~~d~~~Ai~~v~~g 474 (500)
...++++||..|++++-..
T Consensus 322 ~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~ 362 (386)
T KOG0737|consen 322 LLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSAS 362 (386)
T ss_pred chhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhH
Confidence 2456778888888876544
No 31
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=7.4e-36 Score=320.25 Aligned_cols=264 Identities=33% Similarity=0.563 Sum_probs=220.6
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------- 291 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p------- 291 (500)
+..+..|+++|+||+|++++++++++.+.. +.+|+.|..+|.++|+|+|||||||||||++|+++|++++.+
T Consensus 171 l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~ 250 (512)
T TIGR03689 171 LVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGD 250 (512)
T ss_pred ceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCC
Confidence 344667889999999999999999999887 899999999999999999999999999999999999998654
Q ss_pred ---EEEEechhhHHhhhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC
Q 010809 292 ---FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (500)
Q Consensus 292 ---fi~is~se~~~~~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~ 364 (500)
|+.++++++..+|+|..+..++.+|+.++.. .||||||||+|.++++|+.+ .+++.....+++||.+||++
T Consensus 251 ~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~--~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSG--VSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred ceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCC--ccchHHHHHHHHHHHHhccc
Confidence 6677888999999999999999999998764 69999999999999888653 23344467889999999999
Q ss_pred CCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC-CCCCc---------cccHHHHHH----
Q 010809 365 EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-KKFDA---------DVSLDVIAM---- 430 (500)
Q Consensus 365 ~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~-~~l~~---------dvdl~~la~---- 430 (500)
....+++||+|||+++.||++++||||||+.|++++|+.++|.+||+.++.. .++.. ..++..+++
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~ 408 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVD 408 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999864 33311 112222221
Q ss_pred -------------------------hCCCCcHHHHHHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHHcCcCCCC-C
Q 010809 431 -------------------------RTPGFSGADLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGMEGTV-M 480 (500)
Q Consensus 431 -------------------------~t~G~sgadL~~lv~eAa~~A~r~----~~~~It~~d~~~Ai~~v~~g~~~~~-~ 480 (500)
.++.+||++|+++|.+|...|..+ +...|+++|+..|++......+.-. .
T Consensus 409 ~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~~~~~~~ 488 (512)
T TIGR03689 409 HLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRESEDLPNT 488 (512)
T ss_pred HHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhcccccCCCC
Confidence 256689999999999999998866 4568999999999998776555543 2
Q ss_pred CChhh
Q 010809 481 TDGKS 485 (500)
Q Consensus 481 ~~~~e 485 (500)
.++++
T Consensus 489 ~~~~~ 493 (512)
T TIGR03689 489 TNPDD 493 (512)
T ss_pred CCHHH
Confidence 34443
No 32
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=306.17 Aligned_cols=242 Identities=40% Similarity=0.661 Sum_probs=226.2
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
+.++ .++.|.......+++.+.+ +.+|..|...|.++|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5667 8999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhCC-CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 305 VGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 305 vG~~~~~vr~lf~~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
.|++++.+|..|+++.+.+ |++|||||+|+++++|... ..-..++..||+..||+..+..+++||++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~----~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGA----DDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCccccc----chHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccC
Confidence 9999999999999999998 9999999999999988652 2235688999999999999888999999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHH
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKE 463 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d 463 (500)
++++| ||||+.+.+..|+..+|.+|++.+.+++++.+++++..+|..+.||.|+||..+|.+|+..+.++ ++++
T Consensus 335 ~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~ 408 (693)
T KOG0730|consen 335 PALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEI 408 (693)
T ss_pred hhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHH
Confidence 99999 99999999999999999999999999999998899999999999999999999999999999888 8899
Q ss_pred HHHHHHHHHcCcCCC
Q 010809 464 IDDSIDRIVAGMEGT 478 (500)
Q Consensus 464 ~~~Ai~~v~~g~~~~ 478 (500)
|..|...+.....+.
T Consensus 409 ~~~A~~~i~psa~Re 423 (693)
T KOG0730|consen 409 FQEALMGIRPSALRE 423 (693)
T ss_pred HHHHHhcCCchhhhh
Confidence 999988776555443
No 33
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-34 Score=297.09 Aligned_cols=252 Identities=36% Similarity=0.598 Sum_probs=215.1
Q ss_pred cccCCCCcCcccc--cCChHHHHHHH-H-HHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEE
Q 010809 221 QMEPNTGVTFDDV--AGVDEAKQDFM-E-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSI 295 (500)
Q Consensus 221 ~~~~~~~~~f~dv--~G~de~k~~L~-e-~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-pfi~i 295 (500)
...-.|+..|+++ .|++..-..+- + +...+-.|+...++|++.-+|+|||||||||||++||.+...++. +--.+
T Consensus 209 n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIV 288 (744)
T KOG0741|consen 209 NSIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIV 288 (744)
T ss_pred ccccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCccc
Confidence 3445678889875 57765544442 2 444578899999999999999999999999999999999998754 45568
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHHhC--------CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAKEN--------APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~~~--------~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
++.++.++|||++++.+|.+|..|.+. .-.||++||||++|++|++.. ++..-..+++||||..|||.+.-
T Consensus 289 NGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~-g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 289 NGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMA-GSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred CcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCC-CCCCccHHHHHHHHHhcccHHhh
Confidence 999999999999999999999998431 125999999999999998743 33445678999999999999998
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 443 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~la~~t~G~sgadL~~l 443 (500)
.+++||+.|||.|.+|+||+|||||.-++++.+||..+|.+|++.|.+++. ++.++|++++|.+|..|||++|+-+
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAElegl 447 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGL 447 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHH
Confidence 999999999999999999999999999999999999999999999987653 6789999999999999999999999
Q ss_pred HHHHHHHHHHcC---------------CCCcCHHHHHHHHHHHHc
Q 010809 444 LNEAAILAGRRG---------------KAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 444 v~eAa~~A~r~~---------------~~~It~~d~~~Ai~~v~~ 473 (500)
++.|...|..+. +-.|+++||..|++.+..
T Consensus 448 VksA~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 448 VKSAQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred HHHHHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCc
Confidence 999999887762 235899999999997643
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.7e-33 Score=313.41 Aligned_cols=247 Identities=49% Similarity=0.773 Sum_probs=224.9
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.+.++|+||+|++++++.+++++.. +++|+.|..+|..+|+++||+||||||||++|+++|++++.+|+.++++++...
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4679999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
+.|.....++.+|+.+....|+||||||+|.++.+++... .....+++++|+..|+++.....++||++||+++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~---~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT---GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc---chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999988775421 2233568899999999988888899999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC--------
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG-------- 455 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~-------- 455 (500)
++++|+|||++.+.++.|+.++|.+||+.+.++..+..+.++..++..++||+++|+..+|++|+..+.++.
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999998889999999999999999999999999999887642
Q ss_pred -----------CCCcCHHHHHHHHHHHHcC
Q 010809 456 -----------KAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 456 -----------~~~It~~d~~~Ai~~v~~g 474 (500)
...++.+||..|+..+...
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhcccc
Confidence 1247889999999876544
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=4.7e-33 Score=283.86 Aligned_cols=260 Identities=18% Similarity=0.225 Sum_probs=198.2
Q ss_pred CCcCcccc-cCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 226 TGVTFDDV-AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 226 ~~~~f~dv-~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
...+|+++ .|+--.+.-+..++..+... ....+|.++|++++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 45678888 66666666666555442211 11236789999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHh-----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHH-HHHHHHhcCC------------CC
Q 010809 305 VGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL-NQLLTEMDGF------------EG 366 (500)
Q Consensus 305 vG~~~~~vr~lf~~a~~-----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L-~~LL~emd~~------------~~ 366 (500)
+|++++.+|++|+.|+. .+||||||||||+++++++.+ +.....+.+ .+|++.||+. ..
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~---~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~ 265 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT---QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEE 265 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC---CcchHHHHHHHHHHHHhcCCcccccccccccccc
Confidence 99999999999999975 469999999999999988632 222223444 7899988752 34
Q ss_pred CCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC----CcHHHHHH
Q 010809 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG----FSGADLAN 442 (500)
Q Consensus 367 ~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G----~sgadL~~ 442 (500)
..+|+||+|||+|+.||++|+||||||+.+ ..|+.++|.+||+.++++..++ ..++..++..++| |.|+--..
T Consensus 266 ~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar 342 (413)
T PLN00020 266 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRAR 342 (413)
T ss_pred CCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHH
Confidence 567999999999999999999999999854 5899999999999999998876 5788999999887 56765566
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCCCCChhhHHHHHhhhcccccc
Q 010809 443 LLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVAYHEVGHAIC 499 (500)
Q Consensus 443 lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~~~~~~ek~~~a~hE~gha~~ 499 (500)
+..++...-+. ..-++..-++.+.+.++..........+-++-|+||.+|
T Consensus 343 ~yd~~v~~~i~-------~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~ 392 (413)
T PLN00020 343 VYDDEVRKWIA-------EVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLV 392 (413)
T ss_pred HHHHHHHHHHH-------HhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 66666544322 222333444555444444444444555666778888765
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-32 Score=305.72 Aligned_cols=252 Identities=35% Similarity=0.603 Sum_probs=222.7
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEec
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~ 297 (500)
.+..+.|++|+|.+.++.+|+|.|.+ +-.|+.|..+++.+|+|||++||||||||+.|+|+|..+ .+-|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 34578999999999999999999988 999999999999999999999999999999999999876 568888899
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
.+..++|+|..+..++.+|++|++..|+|||+||||.++..|+.- .......++..||..|||....+.|+||+|||
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk---qEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK---QEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch---HHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 999999999999999999999999999999999999998888541 22334567888999999999999999999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
+++.+|++|+||||||+.+++++|+.+.|.+|+..|.++-.-. ...-+..+|..+.||-|+||+.+|.+|++.+.++.-
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999998765421 223467899999999999999999999999998732
Q ss_pred ----------------CCcCHHHHHHHHHHHHcCcCCC
Q 010809 457 ----------------AAISSKEIDDSIDRIVAGMEGT 478 (500)
Q Consensus 457 ----------------~~It~~d~~~Ai~~v~~g~~~~ 478 (500)
..|...||-.|+.++.....+.
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCcc
Confidence 2367788888888877666554
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=276.84 Aligned_cols=245 Identities=35% Similarity=0.552 Sum_probs=211.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..+++.|+|++|.+.+|+.+.+.+.+ +..|..|..+- .+++++||.||||||||+|++|+|.|.++.|+.++++.+..
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts 224 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS 224 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh
Confidence 34568999999999999999999999 56688877442 34579999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEeeCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~--~~~viVIaaTN~~~ 380 (500)
+|+|.+++.++.+|.-|+..+|+||||||+|.++.+|.. ..++...+...++|..+++... +++|+||+|||+|+
T Consensus 225 K~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~---~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~ 301 (428)
T KOG0740|consen 225 KYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSD---NEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPW 301 (428)
T ss_pred hccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCC---cccccchhhhhHHHhhhccccCCCCCeEEEEecCCCch
Confidence 999999999999999999999999999999999999844 4455566778888888877643 45799999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC-CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC----
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG---- 455 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~---- 455 (500)
.+|++++| ||.+++++|+||.+.|..+|+..+.+.+ ...+.++..+++.|+||++.||.++|.+|++--.+..
T Consensus 302 e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~~~~~~ 379 (428)
T KOG0740|consen 302 ELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRELGGTT 379 (428)
T ss_pred HHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhhcccch
Confidence 99999999 9999999999999999999999987763 3356789999999999999999999999986544332
Q ss_pred ---------CCCcCHHHHHHHHHHHHcC
Q 010809 456 ---------KAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 456 ---------~~~It~~d~~~Ai~~v~~g 474 (500)
.+.|+..|++.+...+...
T Consensus 380 ~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 380 DLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred hhhhcchhccCCCCcchHHHHHHhhccc
Confidence 2446677888888876443
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.90 E-value=3.2e-22 Score=202.46 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=161.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCc---eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechh
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK---GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE 299 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~---gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~se 299 (500)
+++++|++++|+++.+++.++..+..+.+.|...|. +++|+||||||||++|+++|..+ ..+++++++++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 358999999999999999987777777778876653 58999999999999999998875 24799999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
+...++|..+..++.+|+.+. ++||||||+|.+...++. ++...+.++.|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~~-----~~~~~e~~~~L~~~me~~--~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDNE-----RDYGSEAIEILLQVMENQ--RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCCc-----cchHHHHHHHHHHHHhcC--CCCEEEEEeCCcH
Confidence 999999988888888888764 369999999999654321 233456677788878753 3567888887642
Q ss_pred C-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC--CCcccc---HHHHHHh--CCCC-cHHHHHHHHHH
Q 010809 380 D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK--FDADVS---LDVIAMR--TPGF-SGADLANLLNE 446 (500)
Q Consensus 380 ~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~--l~~dvd---l~~la~~--t~G~-sgadL~~lv~e 446 (500)
. .++|++++ ||+..+.|+.++.+++.+|++..+++.. ++++.. ...+.+. .+.| +++++++++..
T Consensus 172 ~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 172 RMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred HHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 2 34689999 9999999999999999999999987644 333322 1222221 1222 58999999998
Q ss_pred HHHHHHH
Q 010809 447 AAILAGR 453 (500)
Q Consensus 447 Aa~~A~r 453 (500)
|...-..
T Consensus 250 ~~~~~~~ 256 (287)
T CHL00181 250 ARMRQAN 256 (287)
T ss_pred HHHHHHH
Confidence 8765433
No 39
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.89 E-value=3.4e-22 Score=202.01 Aligned_cols=208 Identities=19% Similarity=0.282 Sum_probs=163.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCC--C-ceEEEEcCCCChHHHHHHHHHHhcC-------CCEEEEechhhH
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI--P-KGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSISGSEFV 301 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~--p-~gvLL~GppGTGKT~LAralA~e~~-------~pfi~is~se~~ 301 (500)
+++|++++|+++.+++.++..++.+.+.|... | .+++|+||||||||++|+++|..+. .+|++++++++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 69999999999999999988888888888775 2 4899999999999999999988662 379999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC--
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-- 379 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~-- 379 (500)
..+.|..+..++++|+++. +++|||||+|.+.+.+. ..+...+.++.|+..|+.. ..+++||++++..
T Consensus 103 ~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~-----~~~~~~~~~~~Ll~~le~~--~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN-----ERDYGQEAIEILLQVMENQ--RDDLVVILAGYKDRM 172 (284)
T ss_pred HhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC-----ccchHHHHHHHHHHHHhcC--CCCEEEEEeCCcHHH
Confidence 9999988888888998874 36999999999854322 1233456677788888743 3568888887642
Q ss_pred C---CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCC--CccccHHHHHH--------hCCCCcHHHHHHHHHH
Q 010809 380 D---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVSLDVIAM--------RTPGFSGADLANLLNE 446 (500)
Q Consensus 380 ~---~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l--~~dvdl~~la~--------~t~G~sgadL~~lv~e 446 (500)
+ .++|++++ ||+..+.+|.++.+++.+|++.++++... .++. ...+.. .++| ++++++|++..
T Consensus 173 ~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a-~~~L~~~l~~~~~~~~~G-N~R~lrn~ve~ 248 (284)
T TIGR02880 173 DSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA-EEAFADYIALRRTQPHFA-NARSIRNAIDR 248 (284)
T ss_pred HHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH-HHHHHHHHHHhCCCCCCC-hHHHHHHHHHH
Confidence 2 24799999 99999999999999999999999877543 3222 223322 4667 89999999999
Q ss_pred HHHHHHH
Q 010809 447 AAILAGR 453 (500)
Q Consensus 447 Aa~~A~r 453 (500)
|......
T Consensus 249 ~~~~~~~ 255 (284)
T TIGR02880 249 ARLRQAN 255 (284)
T ss_pred HHHHHHH
Confidence 8866554
No 40
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.89 E-value=7.9e-22 Score=196.82 Aligned_cols=210 Identities=20% Similarity=0.317 Sum_probs=160.2
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCC---ceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEech
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP---KGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p---~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~s 298 (500)
.+++++|++++|+++++++.+........+.|...+ .+++|+||||||||++|+++|+++ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 467899999999999999999766555556666543 478999999999999999999864 3488999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++...++|.....++++|+.+. ++||||||+|.+.+. +..+...+.++.|+..|+.. ...+++|++++.
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~------~~~~~~~~~i~~Ll~~~e~~--~~~~~vila~~~ 152 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG------GEKDFGKEAIDTLVKGMEDN--RNEFVLILAGYS 152 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC------CccchHHHHHHHHHHHHhcc--CCCEEEEecCCc
Confidence 9999999999999999998774 469999999999531 12233456788888888864 345666666543
Q ss_pred CC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCC--CccccHHHHHH----------hCCCCcHHHHH
Q 010809 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF--DADVSLDVIAM----------RTPGFSGADLA 441 (500)
Q Consensus 379 ~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l--~~dvdl~~la~----------~t~G~sgadL~ 441 (500)
.+ .++|++++ ||+..+.++.++.+++.+|++.++..... +++. +..++. ...| +++.++
T Consensus 153 ~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a-~~~l~~~~~~~~~~~~~~~g-n~R~~~ 228 (261)
T TIGR02881 153 DEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEA-KWKLREHLYKVDQLSSREFS-NARYVR 228 (261)
T ss_pred chhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHH-HHHHHHHHHHHHhccCCCCc-hHHHHH
Confidence 32 36889998 99989999999999999999998876543 3322 233321 2234 789999
Q ss_pred HHHHHHHHHHHH
Q 010809 442 NLLNEAAILAGR 453 (500)
Q Consensus 442 ~lv~eAa~~A~r 453 (500)
|++..|......
T Consensus 229 n~~e~a~~~~~~ 240 (261)
T TIGR02881 229 NIIEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHHHH
Confidence 999998766543
No 41
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.88 E-value=6.8e-22 Score=174.46 Aligned_cols=130 Identities=45% Similarity=0.774 Sum_probs=116.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCC-CeEEEEcCcchhhhccCCCCCC
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGG 345 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~-p~IIfIDEID~l~~~r~~~~~~ 345 (500)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.++++|.+++... ||||||||+|.+..+.. ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~---~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ---PS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS---TS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc---cc
Confidence 689999999999999999999999999999999998888999999999999998887 99999999999988761 23
Q ss_pred CChHHHHHHHHHHHHhcCCCCC-CCeEEEEeeCCCCCCchhhcCCCCcceEEEecC
Q 010809 346 GNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (500)
Q Consensus 346 ~~~e~~~~L~~LL~emd~~~~~-~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~ 400 (500)
........+++|+..++..... .+++||++||.++.++++++| +||++.+++|+
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 5667778899999999987665 569999999999999999997 79999999874
No 42
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-21 Score=200.16 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=163.7
Q ss_pred CcCcccccCChHHHHHHHH-HHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 227 GVTFDDVAGVDEAKQDFME-VVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e-~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
+-+|+.++=-.+.|+++.+ +.+|++..+-|.+.|..=-+|.|||||||||||+++.|+|++++..++-++.++...
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~--- 273 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL--- 273 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC---
Confidence 4799999999999999887 556689999999999888889999999999999999999999999999988876432
Q ss_pred hhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCC---CCC-hHHHHHHHHHHHHhcCCCCCC--CeEEEEeeCCC
Q 010809 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG---GGN-DEREQTLNQLLTEMDGFEGNT--GIIVIAATNRA 379 (500)
Q Consensus 306 G~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~---~~~-~e~~~~L~~LL~emd~~~~~~--~viVIaaTN~~ 379 (500)
..+ ++.++...... +||+|.|||+-..-++.... +.. ....-+|..||+.+||..+.. .-|||.|||..
T Consensus 274 --n~d-Lr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 274 --DSD-LRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred --cHH-HHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 233 78887766444 69999999998654332211 111 123468999999999998876 68999999999
Q ss_pred CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC-CCccccHHHHHHhCCCCcHHHHHHH
Q 010809 380 DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAMRTPGFSGADLANL 443 (500)
Q Consensus 380 ~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~la~~t~G~sgadL~~l 443 (500)
+.|||||+||||+|.+|++..-+...-+.+++.++.... ..--.+++.+...+. .|+||+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCc-cCHHHHHHH
Confidence 999999999999999999999999999999999986532 111112344444444 589988543
No 43
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.5e-20 Score=190.16 Aligned_cols=235 Identities=23% Similarity=0.350 Sum_probs=174.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
.+-.|++|+-....+..++.+...-.+-+..+ .+-+++++|||||||||+.|+-+|...|..+-.+.+.|..-. -
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~----apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G 424 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQ----APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-G 424 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhccccccc----chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-c
Confidence 34459999999999999998877644443221 233589999999999999999999999999888888775421 1
Q ss_pred hhhhhHHHHHHHHHHhCC-CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch
Q 010809 306 GVGASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 306 G~~~~~vr~lf~~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~ 384 (500)
..+...+.++|+-+++.. .-+|||||.|++..+|.. ..-++....+||.||-.-- .....++++.+||+|..+|.
T Consensus 425 ~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnk--tymSEaqRsaLNAlLfRTG--dqSrdivLvlAtNrpgdlDs 500 (630)
T KOG0742|consen 425 AQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG--DQSRDIVLVLATNRPGDLDS 500 (630)
T ss_pred hHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhch--hhhcHHHHHHHHHHHHHhc--ccccceEEEeccCCccchhH
Confidence 223456788999997654 458999999999887754 2334556678999886542 22446899999999999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC------------------------c---cccHHHHHHhCCCCcH
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD------------------------A---DVSLDVIAMRTPGFSG 437 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~------------------------~---dvdl~~la~~t~G~sg 437 (500)
++-. |+|..++||+|..++|..+|..++.+.-.. . +..+.+.|+.|+||||
T Consensus 501 AV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSG 578 (630)
T KOG0742|consen 501 AVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSG 578 (630)
T ss_pred HHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcH
Confidence 9988 999999999999999999999887543211 1 1125678899999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
++|..++-.....+.-.....++..-|++.++-.
T Consensus 579 REiakLva~vQAavYgsedcvLd~~lf~e~v~yk 612 (630)
T KOG0742|consen 579 REIAKLVASVQAAVYGSEDCVLDEALFDERVDYK 612 (630)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence 9999988744333333334456666666666543
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=1.3e-19 Score=186.68 Aligned_cols=221 Identities=24% Similarity=0.321 Sum_probs=166.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.....+.+|+|++|+++.++.+..++...+.+ ...+.+++|+||||||||++|+++|++++..+..++++.+.
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 33455679999999999999999888764332 13456899999999999999999999999998887765432
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc------C-CC------CCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------G-FE------GNT 368 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd------~-~~------~~~ 368 (500)
....+..++... ..+++|||||||.+. ...++.+..++.... . .. .-.
T Consensus 89 ------~~~~l~~~l~~l--~~~~vl~IDEi~~l~-----------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 89 ------KPGDLAAILTNL--EEGDVLFIDEIHRLS-----------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ------ChHHHHHHHHhc--ccCCEEEEecHhhcc-----------hHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 122344444443 346799999999983 223334444333211 0 00 113
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
++.+|++||++..++++|++ ||...+.++.|+.+++.+|++..+...+.. ++..+..++..+.| +++.+.++++.+
T Consensus 150 ~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 47889999999999999988 998899999999999999999887765543 22337889999998 789999999998
Q ss_pred HHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
...|..++...|+.+++..+++..
T Consensus 227 ~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 227 RDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHh
Confidence 888877777789999999999764
No 45
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.83 E-value=3.4e-19 Score=181.01 Aligned_cols=213 Identities=23% Similarity=0.315 Sum_probs=157.5
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVG 308 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~ 308 (500)
+|+|++|+++.+++|..++...+.. ...+.+++|+||||||||++|+++|++++.++..++++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 7999999999999998888653322 123557999999999999999999999999887776543221
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc-------CC------CCCCCeEEEEe
Q 010809 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-------GF------EGNTGIIVIAA 375 (500)
Q Consensus 309 ~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd-------~~------~~~~~viVIaa 375 (500)
...+...+... ..+.+|||||+|.+. +..+..+..++.... +. ....++++|++
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~-----------~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~ 135 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLS-----------PAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGA 135 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhC-----------HHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEe
Confidence 11223333332 345799999999983 223333433333211 00 01234789999
Q ss_pred eCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 376 TN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
||++..+++++++ ||...+.+++|+.+++.++++..+...... ++..+..++..+.| +++.+.++++.+...|...
T Consensus 136 t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~ 212 (305)
T TIGR00635 136 TTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVR 212 (305)
T ss_pred cCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHc
Confidence 9999999999999 998889999999999999999887654433 22336788999988 7788899999988888777
Q ss_pred CCCCcCHHHHHHHHHH
Q 010809 455 GKAAISSKEIDDSIDR 470 (500)
Q Consensus 455 ~~~~It~~d~~~Ai~~ 470 (500)
+...|+.++++++++.
T Consensus 213 ~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 213 GQKIINRDIALKALEM 228 (305)
T ss_pred CCCCcCHHHHHHHHHH
Confidence 7778999999999987
No 46
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.83 E-value=4e-19 Score=171.60 Aligned_cols=195 Identities=28% Similarity=0.374 Sum_probs=131.0
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.-.+.+|+|++|+++.+..+.-+++..+... ....+++||||||+|||+||+.+|++++.+|...++..+..
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k- 88 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK- 88 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S-
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh-
Confidence 3456799999999999999988887654321 12338999999999999999999999999999998854321
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc-----CCCCC--------CCe
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-----GFEGN--------TGI 370 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd-----~~~~~--------~~v 370 (500)
...+..++..... ..||||||||.+ +...++.|...++... |-..+ +.+
T Consensus 89 -----~~dl~~il~~l~~--~~ILFIDEIHRl-----------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 89 -----AGDLAAILTNLKE--GDILFIDEIHRL-----------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp -----CHHHHHHHHT--T--T-EEEECTCCC-------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred -----HHHHHHHHHhcCC--CcEEEEechhhc-----------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 2334444544433 469999999999 4455555555444211 11111 248
Q ss_pred EEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 371 IVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 371 iVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~la~~t~G~sgadL~~lv~eA 447 (500)
.+|+||++...|.++|+. ||.-...+..++.++..+|++......++.-+. ....+|.++.| +++-..++++.+
T Consensus 151 TligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 999999999999999999 999888999999999999999877776665333 36789999998 898777777654
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.8e-19 Score=178.30 Aligned_cols=237 Identities=22% Similarity=0.280 Sum_probs=173.6
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhhhhhhC-CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEech
Q 010809 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS 298 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G-~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~s 298 (500)
|+.++=-.+.|+++...+.. +.-.++-..-. +.--+-+||+||||||||+|+||+|..+ ....+.+++.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 55666667788888776544 32222111100 1112358999999999999999999976 3467899999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhC---CC--eEEEEcCcchhhhccCCC-CCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKEN---AP--CIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~---~p--~IIfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
.+.++|.++..+.+..+|++..+. .. -.++|||++.++..|.+. .+......-+++|.+|+++|.+...++|++
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nvli 300 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLI 300 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEE
Confidence 999999999999999999987442 22 245699999999888443 334555677999999999999999999999
Q ss_pred EEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC-------------CCcccc-----HHHHHH-hCC
Q 010809 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------------FDADVS-----LDVIAM-RTP 433 (500)
Q Consensus 373 IaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~-------------l~~dvd-----l~~la~-~t~ 433 (500)
++|+|..+.+|.|+.. |-|-+.++.+|+...+.+|++.++...- +..... ...+.. .+.
T Consensus 301 L~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~ 378 (423)
T KOG0744|consen 301 LATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTV 378 (423)
T ss_pred EeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhc
Confidence 9999999999999999 9999999999999999999998764321 101111 122222 358
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
|.||+-|+.+=--|.. ..-....|+.++|-.|+-.
T Consensus 379 gLSGRtlrkLP~Laha--~y~~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 379 GLSGRTLRKLPLLAHA--EYFRTFTVDLSNFLLALLE 413 (423)
T ss_pred CCccchHhhhhHHHHH--hccCCCccChHHHHHHHHH
Confidence 9999998876554432 2223357898888777654
No 48
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-18 Score=189.24 Aligned_cols=222 Identities=24% Similarity=0.428 Sum_probs=177.6
Q ss_pred HHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCC
Q 010809 245 EVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAP 324 (500)
Q Consensus 245 e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p 324 (500)
+++..+.-+..-...+.+.--.+||+|+||||||++++++|.++|.+++.++|.++...-....+..+...|..|+...|
T Consensus 412 ~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~p 491 (953)
T KOG0736|consen 412 ELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSP 491 (953)
T ss_pred HHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCc
Confidence 44444433322222333344479999999999999999999999999999999999988888888899999999999999
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCH
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~-~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~ 403 (500)
+|||+-++|.++..+.. +.+-...+.+++++. .|.+. +..+++||++|+..+.+++.+++ .|-..|.++.|+.
T Consensus 492 avifl~~~dvl~id~dg---ged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse 565 (953)
T KOG0736|consen 492 AVLFLRNLDVLGIDQDG---GEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSE 565 (953)
T ss_pred eEEEEeccceeeecCCC---chhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHH--hhhhhccCCCCCH
Confidence 99999999999854432 233344455666655 44444 45689999999999999999999 7777899999999
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH---HcC-----------------CCCcCHHH
Q 010809 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAG---RRG-----------------KAAISSKE 463 (500)
Q Consensus 404 ~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~---r~~-----------------~~~It~~d 463 (500)
++|.+||+.++....+..++....++.+++||+.+|+..++..+-..+. .+. ...++++|
T Consensus 566 ~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ed 645 (953)
T KOG0736|consen 566 EQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEED 645 (953)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHH
Confidence 9999999999999999999999999999999999999988876622221 111 15689999
Q ss_pred HHHHHHHHH
Q 010809 464 IDDSIDRIV 472 (500)
Q Consensus 464 ~~~Ai~~v~ 472 (500)
|.+|+++..
T Consensus 646 f~kals~~~ 654 (953)
T KOG0736|consen 646 FDKALSRLQ 654 (953)
T ss_pred HHHHHHHHH
Confidence 999999754
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.2e-18 Score=196.91 Aligned_cols=226 Identities=22% Similarity=0.340 Sum_probs=164.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-++++++|.++..+.+.+++..- ...+++|+||||||||++|+++|.++ +..++.+
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~ 244 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL 244 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe
Confidence 3457899999998888665554321 23479999999999999999999986 6779999
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
+++.+. .+|.|..+++++.+|+.+....++||||||+|.+.+.+.. +++.....+. |...+. +..+.+|
T Consensus 245 ~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~~~~~~~~~~---L~~~l~----~g~i~~I 315 (731)
T TIGR02639 245 DMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGAT--SGGSMDASNL---LKPALS----SGKLRCI 315 (731)
T ss_pred cHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCC--CCccHHHHHH---HHHHHh----CCCeEEE
Confidence 998887 4788999999999999998778999999999999765432 1122222233 333333 4678999
Q ss_pred EeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC----CCC-ccccHHHHHHhCCCC-----cHH
Q 010809 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFD-ADVSLDVIAMRTPGF-----SGA 438 (500)
Q Consensus 374 aaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~----~l~-~dvdl~~la~~t~G~-----sga 438 (500)
++||..+ ..|+++.| ||+ .+.++.|+.+++.+||+...... .+. .+..+..++..+..| -+.
T Consensus 316 gaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~ 392 (731)
T TIGR02639 316 GSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPD 392 (731)
T ss_pred EecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCH
Confidence 9999743 57999999 997 79999999999999999765432 111 233355566555443 344
Q ss_pred HHHHHHHHHHHHHHHc----CCCCcCHHHHHHHHHHHHcCc
Q 010809 439 DLANLLNEAAILAGRR----GKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 439 dL~~lv~eAa~~A~r~----~~~~It~~d~~~Ai~~v~~g~ 475 (500)
..-.++++|+....-+ .+..|+.+|+..++.+...-+
T Consensus 393 kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~tgiP 433 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKMAHIP 433 (731)
T ss_pred HHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHHhCCC
Confidence 5567888877644322 235699999999999865333
No 50
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=2.8e-18 Score=186.05 Aligned_cols=219 Identities=44% Similarity=0.730 Sum_probs=197.6
Q ss_pred hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEE
Q 010809 250 LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 250 l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfI 329 (500)
+..+..+..++..+|++++++||||||||++++++|.+ +..++.+++.+...++.|......+.+|+.++...|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45677888999999999999999999999999999999 66668899999999999999999999999999999999999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHH
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I 409 (500)
||+|.+.+.+.. .........+.+++..|+++.... +++++.+|++..+++++++|+||++.+.+..|+...+.+|
T Consensus 83 d~~~~~~~~~~~---~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS---DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc---cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999988866 233345678889999999888444 8889999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC------CCCcCHHHHHHHHHHHHc
Q 010809 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------KAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 410 L~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~------~~~It~~d~~~Ai~~v~~ 473 (500)
+..+........+.+...++..+.|++++++..++.++...+.++. ...++.+++.++++++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~ 228 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLP 228 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCc
Confidence 9999999888888999999999999999999999999999988875 356899999999999754
No 51
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.80 E-value=1.7e-18 Score=194.90 Aligned_cols=227 Identities=22% Similarity=0.322 Sum_probs=164.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 296 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~is 296 (500)
.=.++.++|.++..+++.+++..- .+.++||+||||||||++|+++|... +..++.++
T Consensus 182 ~g~~~~liGR~~ei~~~i~iL~r~------------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~ 249 (758)
T PRK11034 182 VGGIDPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD 249 (758)
T ss_pred cCCCCcCcCCCHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc
Confidence 345789999999888877766542 13378999999999999999999864 44556666
Q ss_pred chhhH--HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 010809 297 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (500)
Q Consensus 297 ~se~~--~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIa 374 (500)
.+.+. ..|.|..+.+++.+|+.+....++||||||||.+.+.++. .++..+..+++..++. +..+.+|+
T Consensus 250 ~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~--~~g~~d~~nlLkp~L~-------~g~i~vIg 320 (758)
T PRK11034 250 IGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAA--SGGQVDAANLIKPLLS-------SGKIRVIG 320 (758)
T ss_pred HHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCC--CCcHHHHHHHHHHHHh-------CCCeEEEe
Confidence 65555 4577888899999999998888899999999999765432 1222333344444443 56799999
Q ss_pred eeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcccc-----HHHHHHh-----CCCCcHHH
Q 010809 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-----LDVIAMR-----TPGFSGAD 439 (500)
Q Consensus 375 aTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-----l~~la~~-----t~G~sgad 439 (500)
+||.++ ..|++|.| ||+ .|.++.|+.+++.+||+.+........++. +...+.. ...+-+..
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdK 397 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHH
Confidence 999865 57999999 996 799999999999999998766544433333 2222222 23445668
Q ss_pred HHHHHHHHHHHHH----HcCCCCcCHHHHHHHHHHHHcCcCC
Q 010809 440 LANLLNEAAILAG----RRGKAAISSKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 440 L~~lv~eAa~~A~----r~~~~~It~~d~~~Ai~~v~~g~~~ 477 (500)
...++++|+.... ...+..|+.+|+.+.+.+...-+..
T Consensus 398 aidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~tgip~~ 439 (758)
T PRK11034 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEK 439 (758)
T ss_pred HHHHHHHHHHhhccCcccccccccChhhHHHHHHHHhCCChh
Confidence 8899999986442 2334569999999999886644433
No 52
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.4e-18 Score=185.34 Aligned_cols=233 Identities=23% Similarity=0.279 Sum_probs=178.3
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhHHhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~~~~vG 306 (500)
.|++-..++|++.-+ ..-.| ...+.++||+||+|+|||.|+++++.++ .+.+.+++|+.+...-+.
T Consensus 408 ~d~i~~~s~kke~~n---~~~sp-------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN---QELSP-------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhh---hhccc-------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 456666666665444 22222 2234479999999999999999999987 456788999998877677
Q ss_pred hhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh-cCC-CCCCCeEEEEeeCCCCCCch
Q 010809 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGF-EGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 307 ~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em-d~~-~~~~~viVIaaTN~~~~Ld~ 384 (500)
...+.++.+|.++...+|+||++|++|.|....+ ..++......+.++.++..+ +.| ..+..+.|||+.+....+++
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~-~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~ 556 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASS-NENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNP 556 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCc-ccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcCh
Confidence 7778899999999999999999999999977222 12333444445555554332 222 23445799999999999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc----CCCCc
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR----GKAAI 459 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~----~~~~I 459 (500)
.|.+|++|+.++.++.|+..+|.+||+..+++.... ...|++.++..|+||...|+.-++.+|...|.++ +.+.+
T Consensus 557 ~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~kll 636 (952)
T KOG0735|consen 557 LLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLL 636 (952)
T ss_pred hhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccc
Confidence 999999999999999999999999999988776532 2234666999999999999999999998888732 33478
Q ss_pred CHHHHHHHHHHHHcC
Q 010809 460 SSKEIDDSIDRIVAG 474 (500)
Q Consensus 460 t~~d~~~Ai~~v~~g 474 (500)
|.++|.++++....-
T Consensus 637 tke~f~ksL~~F~P~ 651 (952)
T KOG0735|consen 637 TKELFEKSLKDFVPL 651 (952)
T ss_pred hHHHHHHHHHhcChH
Confidence 999999999976443
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.78 E-value=3.9e-18 Score=175.00 Aligned_cols=204 Identities=29% Similarity=0.418 Sum_probs=144.2
Q ss_pred CCCcCcccccCChHHHHH---HHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 225 NTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~---L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
-.+.+++|++|+++...+ |..+++.- ...+.+||||||||||+||+.+|+..+.+|..+|+
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~------------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA---- 81 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAG------------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA---- 81 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcC------------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc----
Confidence 346799999999987744 33333321 12279999999999999999999999999999987
Q ss_pred HhhhhhhhhHHHHHHHHHHhCC----CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee-
Q 010809 302 EMFVGVGASRVRDLFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT- 376 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~----p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT- 376 (500)
+-.+.+.+|++++++++.. ..||||||||.+ +...+ ..||-.++ +..+++|+||
T Consensus 82 ---v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf-----------nK~QQ---D~lLp~vE----~G~iilIGATT 140 (436)
T COG2256 82 ---VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF-----------NKAQQ---DALLPHVE----NGTIILIGATT 140 (436)
T ss_pred ---ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc-----------Chhhh---hhhhhhhc----CCeEEEEeccC
Confidence 4456678999999995532 479999999998 33233 34555554 5678888877
Q ss_pred -CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc--CCCCC------ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 377 -NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS--NKKFD------ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 377 -N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~--~~~l~------~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
|+.-.+.++|++ |. +++++.+.+.++...+++..+. ...+. ++.-.+.++..+.| .++-.-|++..+
T Consensus 141 ENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G-D~R~aLN~LE~~ 216 (436)
T COG2256 141 ENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG-DARRALNLLELA 216 (436)
T ss_pred CCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc-hHHHHHHHHHHH
Confidence 556689999999 88 5889999999999998887332 22232 23346778888887 444444555555
Q ss_pred HHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
...+ +.+. .++.+++++.+.+.
T Consensus 217 ~~~~-~~~~-~~~~~~l~~~l~~~ 238 (436)
T COG2256 217 ALSA-EPDE-VLILELLEEILQRR 238 (436)
T ss_pred HHhc-CCCc-ccCHHHHHHHHhhh
Confidence 4443 2233 34477777776653
No 54
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=7.3e-18 Score=166.12 Aligned_cols=217 Identities=26% Similarity=0.354 Sum_probs=169.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
.+.+|+|.+|++++|++|.-+++..+... ....++||+||||.|||+||..+|+|+++.+-..++..+..
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK--- 90 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK--- 90 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC---
Confidence 46789999999999999999888755432 23558999999999999999999999999999888755431
Q ss_pred hhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc-------CCCC------CCCeEE
Q 010809 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD-------GFEG------NTGIIV 372 (500)
Q Consensus 306 G~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd-------~~~~------~~~viV 372 (500)
+..+-.++.....+ +|+||||||++. ...++.|...+.... |... -+.+.+
T Consensus 91 ---~gDlaaiLt~Le~~--DVLFIDEIHrl~-----------~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 ---PGDLAAILTNLEEG--DVLFIDEIHRLS-----------PAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred ---hhhHHHHHhcCCcC--CeEEEehhhhcC-----------hhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 22334445444433 699999999993 334555544443211 1111 125889
Q ss_pred EEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 373 IaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
|+||.+.-.|...|+. ||.....+..++.++..+|++.......+.-+ .....+|+++.| +++=..++++..--+|
T Consensus 155 IGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa 231 (332)
T COG2255 155 IGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFA 231 (332)
T ss_pred eeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999988776665533 336789999998 9998889999999999
Q ss_pred HHcCCCCcCHHHHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai~~v 471 (500)
.-++...|+.+-..+|++..
T Consensus 232 ~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 232 QVKGDGDIDRDIADKALKML 251 (332)
T ss_pred HHhcCCcccHHHHHHHHHHh
Confidence 88899999999888888864
No 55
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.78 E-value=1.5e-17 Score=178.37 Aligned_cols=224 Identities=20% Similarity=0.332 Sum_probs=154.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se 299 (500)
.+..+|++.+..+.....+..+..+..+|. ....+++||||||+|||+|++++++++ +..++++++.+
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~-------~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~ 188 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEK 188 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcC-------ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 466799996533343333333333333332 123469999999999999999999987 56799999999
Q ss_pred hHHhhhhhhhh-HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 300 ~~~~~vG~~~~-~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
|...+...... ....+.+..+ .+.+|+|||+|.+..+ +..++.+..++..+- .....+||+++..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~l~---~~~~~iiits~~~ 254 (450)
T PRK00149 189 FTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGK---------ERTQEEFFHTFNALH---EAGKQIVLTSDRP 254 (450)
T ss_pred HHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHH---HCCCcEEEECCCC
Confidence 98776544322 2223333222 4679999999998432 222333444444332 1233466666555
Q ss_pred CCC---CchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 ~~~---Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
|.. +++.+.+ ||.. .+.++.||.++|.+|++..+...++. ++..++.+|....| +.++|..+++.....|.
T Consensus 255 p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~ 331 (450)
T PRK00149 255 PKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYAS 331 (450)
T ss_pred HHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHH
Confidence 554 6788888 9964 79999999999999999988754432 33348889999988 99999999999888876
Q ss_pred HcCCCCcCHHHHHHHHHHHHc
Q 010809 453 RRGKAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~v~~ 473 (500)
..++ .||.+.+++++.....
T Consensus 332 ~~~~-~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 332 LTGK-PITLELAKEALKDLLA 351 (450)
T ss_pred hhCC-CCCHHHHHHHHHHhhc
Confidence 6654 5999999999998653
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.77 E-value=1.4e-17 Score=181.85 Aligned_cols=220 Identities=22% Similarity=0.297 Sum_probs=152.1
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------C
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------G 289 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~ 289 (500)
-+.++..+.+|+|++|+++.++.++..+. ...|.++||+||||||||++|+++..++ +
T Consensus 54 ~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~ 121 (531)
T TIGR02902 54 PLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEG 121 (531)
T ss_pred hHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCC
Confidence 34566778899999999999988875431 1224589999999999999999997642 4
Q ss_pred CCEEEEechhh-------HHhhhhhh-------h---------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCC
Q 010809 290 VPFFSISGSEF-------VEMFVGVG-------A---------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGG 346 (500)
Q Consensus 290 ~pfi~is~se~-------~~~~vG~~-------~---------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~ 346 (500)
.||+.++|+.. .+...+.. + .....++..+ ...+|||||||.+
T Consensus 122 ~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a---~gG~L~IdEI~~L----------- 187 (531)
T TIGR02902 122 AAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRA---HGGVLFIDEIGEL----------- 187 (531)
T ss_pred CCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhcc---CCcEEEEechhhC-----------
Confidence 68999998631 11111110 0 0001122222 3469999999999
Q ss_pred ChHHHHHHHHHHHHhc---------CC--------------CCCCCeEEE-EeeCCCCCCchhhcCCCCcceEEEecCCC
Q 010809 347 NDEREQTLNQLLTEMD---------GF--------------EGNTGIIVI-AATNRADILDSALLRPGRFDRQVTVDVPD 402 (500)
Q Consensus 347 ~~e~~~~L~~LL~emd---------~~--------------~~~~~viVI-aaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd 402 (500)
+...++.|..++.+-. +. .-+.++.+| +||+.++.+++++++ |+. .+.++.++
T Consensus 188 ~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~ 264 (531)
T TIGR02902 188 HPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLL 264 (531)
T ss_pred CHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCC
Confidence 4444444444444310 00 001234455 556779999999999 885 78899999
Q ss_pred HHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 403 IRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 403 ~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
.+++.+|++..+++..+. ++..++.++..+. +++++.|+++.|+..|..+++..|+.+|++.++..
T Consensus 265 ~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 265 DEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCC
Confidence 999999999998776543 2223555655443 89999999999999998888889999999999764
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.3e-17 Score=177.80 Aligned_cols=207 Identities=19% Similarity=0.273 Sum_probs=154.5
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
+.+++.+.+|+||+|++.+...|...+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 456677889999999999999888877632 345579999999999999999999988652
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
|+.+++. ...+.+.+|++.+.+. .....|+||||+|.+. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaa------s~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------------~~ 136 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAA------SNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------------DQ 136 (484)
T ss_pred CCcHHHHHHccCCccceeechh------hcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------------HH
Confidence 2222221 1123445666666553 2345799999999992 24
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
.+|.||..++. +...+++|.+|+.++.+.+++++ |+. .+.+..++.++..+.++..+...++. ++..+..|++.
T Consensus 137 A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 137 SFNALLKTLEE--PPAHIVFILATTEFHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred HHHHHHHHhhc--CCCceEEEeecCChhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67788888874 45678999999999999999999 985 78999999888888888877655543 33457889999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+.| +.++..+++..+...+ ...||.+++.+.+
T Consensus 212 S~G-d~RdAL~lLeq~i~~~----~~~it~~~V~~~l 243 (484)
T PRK14956 212 GDG-SVRDMLSFMEQAIVFT----DSKLTGVKIRKMI 243 (484)
T ss_pred cCC-hHHHHHHHHHHHHHhC----CCCcCHHHHHHHh
Confidence 998 8999999998876432 2358888776544
No 58
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=4.8e-17 Score=172.24 Aligned_cols=224 Identities=21% Similarity=0.354 Sum_probs=151.7
Q ss_pred CCCcCccc-ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 010809 225 NTGVTFDD-VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (500)
Q Consensus 225 ~~~~~f~d-v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~s 298 (500)
.+..+|++ ++|.+. ......+......|. ..+.+++||||||+|||+|++++++++ +..++++++.
T Consensus 104 ~~~~tfd~fi~g~~n-~~a~~~~~~~~~~~~-------~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 104 NPKYTFDNFVVGKSN-RLAHAAALAVAENPG-------KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCCCcccccccCCcH-HHHHHHHHHHHhCcC-------ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 35679999 446433 323333333333332 223469999999999999999999876 6789999999
Q ss_pred hhHHhhhhhhh-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 299 EFVEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 299 e~~~~~vG~~~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+|...+..... .....+.+..+ .+.+|+|||+|.+.++ +..++.+..++..+. .+...+||+++.
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~---------~~~~~~l~~~~n~~~---~~~~~iiits~~ 241 (405)
T TIGR00362 176 KFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGK---------ERTQEEFFHTFNALH---ENGKQIVLTSDR 241 (405)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCC---------HHHHHHHHHHHHHHH---HCCCCEEEecCC
Confidence 98876544322 12222323332 2579999999998432 222333444444432 123345555555
Q ss_pred CCC---CCchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 378 RAD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 378 ~~~---~Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
.|+ .+++.+.+ ||.. .+.++.||.++|.+|++..+...++. ++..++.+|....+ +.++|+.+++.....|
T Consensus 242 ~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 242 PPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYA 318 (405)
T ss_pred CHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 36678888 8875 79999999999999999998765543 34447889999987 9999999999988877
Q ss_pred HHcCCCCcCHHHHHHHHHHHHcC
Q 010809 452 GRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
...+ ..||.+.+++++......
T Consensus 319 ~~~~-~~it~~~~~~~L~~~~~~ 340 (405)
T TIGR00362 319 SLTG-KPITLELAKEALKDLLRA 340 (405)
T ss_pred HHhC-CCCCHHHHHHHHHHhccc
Confidence 6555 458988888888876543
No 59
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=3.5e-17 Score=174.94 Aligned_cols=227 Identities=16% Similarity=0.248 Sum_probs=154.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se 299 (500)
.+..+|++.+-.+........+.....+|.. +.+++||||||+|||+|++++++++ +..++++++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~--------~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~ 170 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGR--------YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCC--------CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH
Confidence 4678999988444444444444444444431 3469999999999999999999975 46789999999
Q ss_pred hHHhhhhhh-hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 300 FVEMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 300 ~~~~~vG~~-~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
|...+...- ...+.+ |.......+.+|+|||+|.+.++. ..++.+..++..+. .....+|+++...
T Consensus 171 f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~---------~~q~elf~~~n~l~---~~~k~iIitsd~~ 237 (440)
T PRK14088 171 FLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT---------GVQTELFHTFNELH---DSGKQIVICSDRE 237 (440)
T ss_pred HHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH---------HHHHHHHHHHHHHH---HcCCeEEEECCCC
Confidence 887664332 122333 333223357899999999884321 12223333333332 1334456655555
Q ss_pred CCC---CchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 ~~~---Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
|.. +++.+.+ ||.. .+.+++||.+.|.+|++..+...++. ++..++.|+....| +.++|+.+++.....+.
T Consensus 238 p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_pred HHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHH
Confidence 554 5667877 8854 78899999999999999888644332 23348889999987 99999999998877776
Q ss_pred HcCCCCcCHHHHHHHHHHHHcCcC
Q 010809 453 RRGKAAISSKEIDDSIDRIVAGME 476 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~v~~g~~ 476 (500)
..+ ..||.+.+.+++...+...+
T Consensus 315 ~~~-~~it~~~a~~~L~~~~~~~~ 337 (440)
T PRK14088 315 TTG-EEVDLKEAILLLKDFIKPNR 337 (440)
T ss_pred HhC-CCCCHHHHHHHHHHHhcccc
Confidence 665 45999999999988754433
No 60
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=3.7e-17 Score=176.83 Aligned_cols=212 Identities=23% Similarity=0.297 Sum_probs=151.8
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+|.+++.+.+|+|++|++++++.+.+++....+. .+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKG--------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 5888899999999999999999999988764421 23678999999999999999999999999999999987
Q ss_pred hHHhhhhhhhhHHHHHHHHHHh------CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 300 FVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~------~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
.... ..++.+...+.. ..+.+|+|||+|.+..+. + ...++.|+..++ ..+..+|
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~-------d---~~~~~aL~~~l~----~~~~~iI 134 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE-------D---RGGARAILELIK----KAKQPII 134 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc-------c---hhHHHHHHHHHH----cCCCCEE
Confidence 5421 122222222211 246799999999984321 1 123444555554 2234566
Q ss_pred EeeCCCCCCch-hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 374 AATNRADILDS-ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 374 aaTN~~~~Ld~-aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
+++|.+..+.. .+++ |+ ..+.++.|+.++...+++..+...++. ++..+..++..+.| |++.+++.....+
T Consensus 135 li~n~~~~~~~k~Lrs--r~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~~a 207 (482)
T PRK04195 135 LTANDPYDPSLRELRN--AC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQAIA 207 (482)
T ss_pred EeccCccccchhhHhc--cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHh
Confidence 77888877776 5655 55 589999999999999999888655443 23347788887766 7888887766544
Q ss_pred HHcCCCCcCHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSI 468 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai 468 (500)
.+...|+.+++....
T Consensus 208 --~~~~~it~~~v~~~~ 222 (482)
T PRK04195 208 --EGYGKLTLEDVKTLG 222 (482)
T ss_pred --cCCCCCcHHHHHHhh
Confidence 455678888876554
No 61
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.75 E-value=2e-17 Score=188.13 Aligned_cols=164 Identities=29% Similarity=0.392 Sum_probs=122.9
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH---------
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--------- 301 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~--------- 301 (500)
+|+.|++++|+.+.+.+....... ...+..++|+||||||||++|+++|+.++.+|+.++++.+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 368999999999998766432111 11223799999999999999999999999999999876432
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC-----CCC--------CC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FEG--------NT 368 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~-----~~~--------~~ 368 (500)
..|+|....++.+.|..+....| ||||||||.+.+.... + . .+.|+..+|. |.. ..
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~-----~--~---~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRG-----D--P---ASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCC-----C--H---HHHHHHhcCHHhcCccccccCCceeccC
Confidence 24566667778888888765555 8899999999743211 1 1 2334443331 111 24
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l 414 (500)
++++|+|||.++.++++|++ ||+ .++++.|+.+++.+|++.++
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 68999999999999999999 995 89999999999999998876
No 62
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4e-17 Score=175.47 Aligned_cols=207 Identities=17% Similarity=0.288 Sum_probs=148.5
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~----------- 290 (500)
.++.++.+|+|++|++++++.|...+..- +.|.++||+||||||||++|+++|+.+++
T Consensus 5 ~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~ 73 (472)
T PRK14962 5 YRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE 73 (472)
T ss_pred HHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc
Confidence 35667889999999999988877765521 34567999999999999999999998764
Q ss_pred -------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 291 -------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
.++.++++. ..+.+.+|.+.+.+.. ....||||||+|.+. ...
T Consensus 74 c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------------~~a 133 (472)
T PRK14962 74 CRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------------KEA 133 (472)
T ss_pred cHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------------HHH
Confidence 244444321 1223456666655532 234699999999982 234
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
++.|+..++. ++..+++|++|+.++.+++++++ |+. .+.+..++.++...+++..+...++. ++..+..++..+
T Consensus 134 ~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 134 FNALLKTLEE--PPSHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 5677777774 33467788788778889999999 884 89999999999999998877654432 233477888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
.| +.+++.+.+..+...+ + ..||.+++++++.
T Consensus 209 ~G-dlR~aln~Le~l~~~~---~-~~It~e~V~~~l~ 240 (472)
T PRK14962 209 SG-GLRDALTMLEQVWKFS---E-GKITLETVHEALG 240 (472)
T ss_pred CC-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHHHc
Confidence 77 6677767776654332 2 3499999988775
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.75 E-value=1e-16 Score=164.43 Aligned_cols=214 Identities=19% Similarity=0.273 Sum_probs=143.5
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi 293 (500)
.+|.+++.+.+|++++|++++++.+.+++..- . +.+++|+||||||||++|+++++++. .+++
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~-----------~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~ 70 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSP-----------N-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFT 70 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCC-----------C-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceE
Confidence 46888888999999999999999888876521 1 12699999999999999999999873 4678
Q ss_pred EEechhhHHhh-------------hhh-------hhhHHHHHHHHHHh-----CCCeEEEEcCcchhhhccCCCCCCCCh
Q 010809 294 SISGSEFVEMF-------------VGV-------GASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (500)
Q Consensus 294 ~is~se~~~~~-------------vG~-------~~~~vr~lf~~a~~-----~~p~IIfIDEID~l~~~r~~~~~~~~~ 348 (500)
+++++++.... .+. ....++.+...... ..+.+|+|||+|.+ .+
T Consensus 71 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l-----------~~ 139 (337)
T PRK12402 71 EFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL-----------RE 139 (337)
T ss_pred EechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC-----------CH
Confidence 89988764321 111 11223333333322 23469999999988 22
Q ss_pred HHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHH
Q 010809 349 EREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDV 427 (500)
Q Consensus 349 e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~ 427 (500)
..++.+..++. ... ....+|.+++.+..+.+.+.+ |+ ..+.+++|+.++..++++..+.+.++. ++..++.
T Consensus 140 ~~~~~L~~~le---~~~--~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~ 211 (337)
T PRK12402 140 DAQQALRRIME---QYS--RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLEL 211 (337)
T ss_pred HHHHHHHHHHH---hcc--CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 33444444443 322 234455566666677778877 77 478999999999999999887765543 3345778
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
++..++| +.+++.+.+. ..+. +...||.+++++++.
T Consensus 212 l~~~~~g-dlr~l~~~l~---~~~~--~~~~It~~~v~~~~~ 247 (337)
T PRK12402 212 IAYYAGG-DLRKAILTLQ---TAAL--AAGEITMEAAYEALG 247 (337)
T ss_pred HHHHcCC-CHHHHHHHHH---HHHH--cCCCCCHHHHHHHhC
Confidence 8888866 5555544444 3332 223699998887654
No 64
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.75 E-value=1.2e-16 Score=166.09 Aligned_cols=224 Identities=21% Similarity=0.276 Sum_probs=155.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------CCEEEEec
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---------VPFFSISG 297 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---------~pfi~is~ 297 (500)
....++++|.++..++|...+...... ..|.+++|+||||||||++++++++++. +++++++|
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~--------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRG--------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 445568999999999888877653221 2345799999999999999999987642 57888998
Q ss_pred hhhHH----------hhh--hh--------hhhHHHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHH
Q 010809 298 SEFVE----------MFV--GV--------GASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ 356 (500)
Q Consensus 298 se~~~----------~~v--G~--------~~~~vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~ 356 (500)
..... ... +. ..+..+.+++... ...+.||+|||+|.+... .+..+.+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~-----------~~~~L~~ 151 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD-----------DDDLLYQ 151 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC-----------CcHHHHh
Confidence 64321 111 11 0122344555443 245689999999999521 1235666
Q ss_pred HHHHhcC-CCCCCCeEEEEeeCCCC---CCchhhcCCCCcc-eEEEecCCCHHHHHHHHHHHhcCC----CCCccc-c-H
Q 010809 357 LLTEMDG-FEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNK----KFDADV-S-L 425 (500)
Q Consensus 357 LL~emd~-~~~~~~viVIaaTN~~~---~Ld~aLlrpgRfd-r~I~v~~Pd~~eR~~IL~~~l~~~----~l~~dv-d-l 425 (500)
|+...+. ...+.++.+|+++|.++ .+++.+.+ ||. ..+.+++++.++..+|++.+++.. .+.+++ + +
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 229 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLC 229 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHH
Confidence 6654221 12235788999999876 57788877 775 579999999999999999887521 122221 1 2
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
..++..+.| ..+.+.++|..|+..|..++...|+.+|+++|++.+.
T Consensus 230 ~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 230 AALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 234455567 6777888999999999999999999999999998763
No 65
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=2e-17 Score=180.52 Aligned_cols=210 Identities=18% Similarity=0.254 Sum_probs=151.7
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---------- 290 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~---------- 290 (500)
+.+++.+.+|+||+|++++++.|.+.+..- +.++.+||+||+|+|||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 345677889999999999999998887643 34557899999999999999999998876
Q ss_pred --CEEEE-ech--------hhHHhh--hhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 291 --PFFSI-SGS--------EFVEMF--VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 291 --pfi~i-s~s--------e~~~~~--vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
|+-.+ +|. ++.+.- ...+.+.+|++.+.+.. ....|+||||+|.+. ...
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------------~~A 140 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------------NHA 140 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------------HHH
Confidence 11111 111 111100 01234557777776532 345799999999992 245
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~la~~t 432 (500)
.|.||+.|+. +..++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++..+ ..+..|++.+
T Consensus 141 aNALLKTLEE--PP~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A 215 (700)
T PRK12323 141 FNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAA 215 (700)
T ss_pred HHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7889998884 45678999999999999999999 88 48999999999988888877765544433 3367889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
.| +.++..+++..+.... ...|+.+++.
T Consensus 216 ~G-s~RdALsLLdQaia~~----~~~It~~~V~ 243 (700)
T PRK12323 216 QG-SMRDALSLTDQAIAYS----AGNVSEEAVR 243 (700)
T ss_pred CC-CHHHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 98 9999999988776432 2346554443
No 66
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.1e-17 Score=168.67 Aligned_cols=214 Identities=22% Similarity=0.269 Sum_probs=151.0
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 294 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~------ 294 (500)
..+++.+.+|+||+|++.+++.+...+..- +.|+.+||+||||+|||++|+++|+++.+....
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345667889999999999999888777532 345578999999999999999999988642110
Q ss_pred --EechhhHHh----h------hhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 295 --ISGSEFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 295 --is~se~~~~----~------vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
.+|.++... + .......++++.+.+.. ....|++|||+|.+. ....+.|+
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------------~~a~naLL 140 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------------RHSFNALL 140 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------------HHHHHHHH
Confidence 011111100 0 00223446666665532 234699999999982 23456777
Q ss_pred HHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 010809 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sg 437 (500)
..++. ++..+.+|.+|+.++.+.+++++ |+ ..+.+++|+.++..++++..++..+.. ++..+..++..+.| ++
T Consensus 141 k~lEe--~~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~ 214 (363)
T PRK14961 141 KTLEE--PPQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SM 214 (363)
T ss_pred HHHhc--CCCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 77774 34466777778888889899988 88 478999999999999999877665532 33446778888887 88
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+++.++++.+... +...|+.+++.+++.
T Consensus 215 R~al~~l~~~~~~----~~~~It~~~v~~~l~ 242 (363)
T PRK14961 215 RDALNLLEHAINL----GKGNINIKNVTDMLG 242 (363)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHHHC
Confidence 8888888877643 456799988877654
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=5.2e-17 Score=179.23 Aligned_cols=204 Identities=16% Similarity=0.246 Sum_probs=151.2
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
..+++.+.+|+||+|++++++.|.+.++. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 34567788999999999999998887652 2345578999999999999999999988652
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.++.++ ..+.+.++++++.+.. ....|+||||+|.|. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------------~~ 134 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------------NH 134 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC--------------HH
Confidence 22222211 1234457777776542 235799999999992 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
..|.||+.|+. ...++++|.+||.++.|.+.+++ |+ .++.|..++.++..+.|+..+...++. ++..+..|++.
T Consensus 135 A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~ 209 (830)
T PRK07003 135 AFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARA 209 (830)
T ss_pred HHHHHHHHHHh--cCCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56778888774 34578999999999999999999 98 489999999999988888877655543 33447888999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
..| +.++..+++..+..+. ...|+.+++.
T Consensus 210 A~G-smRdALsLLdQAia~~----~~~It~~~V~ 238 (830)
T PRK07003 210 AQG-SMRDALSLTDQAIAYS----ANEVTETAVS 238 (830)
T ss_pred cCC-CHHHHHHHHHHHHHhc----cCCcCHHHHH
Confidence 998 8899989988877543 2235555443
No 68
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=2.3e-16 Score=172.21 Aligned_cols=225 Identities=20% Similarity=0.302 Sum_probs=153.5
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSE 299 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se 299 (500)
.+..+|++++..+........+.....++. ...+.++|||++|+|||+|++|+|+++ +..++|+++.+
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~-------~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaee 354 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPA-------KAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEE 354 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCcc-------ccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 456899999744443322222222222221 112259999999999999999999976 57899999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR- 378 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~- 378 (500)
|.+.+.........+.|.+.. ..+++|+||||+.+..+ +..++.+..+++.+.. +.+-+|| ++|.
T Consensus 355 f~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gk---------e~tqeeLF~l~N~l~e---~gk~III-TSd~~ 420 (617)
T PRK14086 355 FTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDK---------ESTQEEFFHTFNTLHN---ANKQIVL-SSDRP 420 (617)
T ss_pred HHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCC---------HHHHHHHHHHHHHHHh---cCCCEEE-ecCCC
Confidence 998776543332223344322 24689999999998432 2334445555555431 2233444 5554
Q ss_pred CC---CCchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 AD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 ~~---~Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
|. .+++.|.+ ||.. .+.+..||.+.|.+||+.++....+. ++.-++.|+.+..+ +.++|+.+++.....|.
T Consensus 421 P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~ 497 (617)
T PRK14086 421 PKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFAS 497 (617)
T ss_pred hHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 33 57888998 8866 77999999999999999988766554 33347888888886 89999999998877776
Q ss_pred HcCCCCcCHHHHHHHHHHHHcC
Q 010809 453 RRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~v~~g 474 (500)
..+ +.||.+.++++++.++..
T Consensus 498 ~~~-~~itl~la~~vL~~~~~~ 518 (617)
T PRK14086 498 LNR-QPVDLGLTEIVLRDLIPE 518 (617)
T ss_pred hhC-CCCCHHHHHHHHHHhhcc
Confidence 555 458998888888876543
No 69
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=9e-17 Score=170.64 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=146.8
Q ss_pred cCCCCcCcccccCChHHHHH---HHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 223 EPNTGVTFDDVAGVDEAKQD---FMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~---L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+...+.+|+|++|+++.... +.++++. . .+.+++|+||||||||++|+++|+..+.+|+.++++.
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~---~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA---G---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc---C---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 44566799999999998766 6665532 1 1337999999999999999999999999999998754
Q ss_pred hHHhhhhhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 300 FVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
. +.+.++.+++.+. .....+|||||+|.+. ... .+.|+..++ ...+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~-----------~~~---q~~LL~~le----~~~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFN-----------KAQ---QDALLPHVE----DGTITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhC-----------HHH---HHHHHHHhh----cCcEEEEEe
Confidence 2 2344566666653 2356899999999982 222 344555554 245667766
Q ss_pred e--CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC-----CCCccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 010809 376 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-----KFDADVSLDVIAMRTPGFSGADLANLLNEAA 448 (500)
Q Consensus 376 T--N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~-----~l~~dvdl~~la~~t~G~sgadL~~lv~eAa 448 (500)
| |....+++++++ |+ ..+.++.++.++...+++..+... .+. +..+..++..+.| +.+.+.+++..++
T Consensus 127 tt~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 127 TTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALEDKERGLVELD-DEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred CCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5 334578999999 88 689999999999999998876532 222 2336678888876 7888888888776
Q ss_pred HHHHHcCCCCcCHHHHHHHHHHH
Q 010809 449 ILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 449 ~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
.. ...|+.+++.+++...
T Consensus 202 ~~-----~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 202 LG-----VDSITLELLEEALQKR 219 (413)
T ss_pred Hc-----cCCCCHHHHHHHHhhh
Confidence 43 4569999999888764
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.1e-16 Score=172.95 Aligned_cols=218 Identities=19% Similarity=0.288 Sum_probs=159.3
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE------
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF------ 293 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi------ 293 (500)
.+..++.+.+|+|++|++.+.+.|...+.. .+.|.++||+||||||||++|+++|+.+++.-.
T Consensus 10 ~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~ 78 (507)
T PRK06645 10 PFARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTT 78 (507)
T ss_pred chhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcC
Confidence 355677889999999999999988876653 234568999999999999999999998865211
Q ss_pred -----E-EechhhHHh----h------hhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 294 -----S-ISGSEFVEM----F------VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 294 -----~-is~se~~~~----~------vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
. -+|..+.+. + ...+...++++++.+... ...|++|||+|.+. ...
T Consensus 79 ~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------------~~a 144 (507)
T PRK06645 79 IKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------------KGA 144 (507)
T ss_pred cCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------------HHH
Confidence 0 011111110 0 112445678888777432 34699999999982 245
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t 432 (500)
++.|+..++. ++..+++|.+|+.++.+.+++++ |+ ..+.+..++.++..++++..++..+..- +..+..++..+
T Consensus 145 ~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 145 FNALLKTLEE--PPPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778887773 45577888888888889999998 88 4789999999999999998887655442 23477899999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
.| +.+++.++++.++.++... ...||.+++++.+.
T Consensus 220 ~G-slR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 220 EG-SARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred CC-CHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 88 9999999999987765322 23588888776543
No 71
>PLN03025 replication factor C subunit; Provisional
Probab=99.73 E-value=1e-16 Score=164.52 Aligned_cols=203 Identities=21% Similarity=0.233 Sum_probs=138.7
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEE
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSI 295 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi~i 295 (500)
|.+++.+.+|+|++|++++.+.|+.++..- ..| ++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~-----------~~~-~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG-----------NMP-NLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC-----------CCc-eEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 677888999999999999999888765521 122 699999999999999999999873 246666
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHH-------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~-------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~ 368 (500)
+.++.. +...+++...... ...+.|++|||+|.+ +...++.+ +..|+.+. .
T Consensus 71 n~sd~~------~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l-----------t~~aq~aL---~~~lE~~~--~ 128 (319)
T PLN03025 71 NASDDR------GIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSM-----------TSGAQQAL---RRTMEIYS--N 128 (319)
T ss_pred cccccc------cHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc-----------CHHHHHHH---HHHHhccc--C
Confidence 665532 1223444333221 123579999999998 23334444 44444332 3
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
...+|.++|.+..+.+++++ |+. .+.++.|+.++....++..++..++. ++..+..++....| +.+.+.+.++.+
T Consensus 129 ~t~~il~~n~~~~i~~~L~S--Rc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~ 204 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQS--RCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQAT 204 (319)
T ss_pred CceEEEEeCCccccchhHHH--hhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 35577788888888899998 874 78999999999999998877654433 23347788888776 555555555422
Q ss_pred HHHHHHcCCCCcCHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~ 466 (500)
. .+...|+.+++.+
T Consensus 205 ~-----~~~~~i~~~~v~~ 218 (319)
T PLN03025 205 H-----SGFGFVNQENVFK 218 (319)
T ss_pred H-----hcCCCCCHHHHHH
Confidence 2 1344677777654
No 72
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=5.7e-17 Score=175.89 Aligned_cols=207 Identities=16% Similarity=0.246 Sum_probs=152.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
+.+++.+.+|+||+|++.+++.|...+..- +.|..+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 456677889999999999999998888632 345578999999999999999999988653
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.+++++ ..+.+.+|++.+.+.. ....|++|||+|.+. ..
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------------~~ 134 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------------GH 134 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------------HH
Confidence 34443321 1234457777776532 234699999999992 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
..|.|+..++. ++..+++|.+|+.+..+.+.+++ |+ ..+.+..++.++..+.++..++..+.. ++..+..+++.
T Consensus 135 a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~ 209 (509)
T PRK14958 135 SFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARA 209 (509)
T ss_pred HHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46778888874 34567888888888888888988 88 478899888888888777777655543 23347788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+.| +.+++.+++..+... +...||.+++.+.+
T Consensus 210 s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 210 ANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred cCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 887 889999999877543 34568888777554
No 73
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=8.2e-17 Score=176.05 Aligned_cols=205 Identities=18% Similarity=0.272 Sum_probs=151.5
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~----------- 290 (500)
.+++.+.+|+||+|++.+++.|...+.. .+.++.+||+||||+|||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 3456778999999999999988887762 234568999999999999999999998865
Q ss_pred -------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 291 -------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
.++.+++++ ..+...+|++.+.+.. ....|+||||+|.+. . ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs------~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS-----------~---~A 134 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAAS------RTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS-----------T---HS 134 (702)
T ss_pred CHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC-----------H---HH
Confidence 233333321 1234456777665532 345799999999982 2 35
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
.+.|+..++. +...+.+|.+|+.+..+.+.+++ |+. ++.+..++.++..+.++..+.+.+.. .+..+..+++.+
T Consensus 135 ~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 135 FNALLKTLEE--PPEHVKFLFATTDPQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6677777774 34567888888888888888887 884 88999999999988888877665543 333477889998
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
.| +.+++.+++..+... +...|+.+++.+.
T Consensus 210 ~G-dLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 210 QG-SLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 88 888888888876643 4556888887664
No 74
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.72 E-value=6.9e-16 Score=162.15 Aligned_cols=224 Identities=21% Similarity=0.263 Sum_probs=155.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhhH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~~ 301 (500)
....+.++|.++..+++...+...... ..|.+++|+||||||||++++.+++++ ++++++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~--------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRG--------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCC--------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 345678999999988888877542211 224579999999999999999999876 5789999986432
Q ss_pred H----------hhhhh-------h-hhHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 302 E----------MFVGV-------G-ASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 302 ~----------~~vG~-------~-~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
. .+.+. . ......+.+.... ..+.||+|||+|.+.... ..+.+..|+..++
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----------~~~~l~~l~~~~~ 167 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----------GNDVLYSLLRAHE 167 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----------CchHHHHHHHhhh
Confidence 1 11110 0 1122233333332 356899999999996211 1245677776665
Q ss_pred CCCCCCCeEEEEeeCCCC---CCchhhcCCCCcc-eEEEecCCCHHHHHHHHHHHhcCCC---CCccccHHHHHHhC---
Q 010809 363 GFEGNTGIIVIAATNRAD---ILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKK---FDADVSLDVIAMRT--- 432 (500)
Q Consensus 363 ~~~~~~~viVIaaTN~~~---~Ld~aLlrpgRfd-r~I~v~~Pd~~eR~~IL~~~l~~~~---l~~dvdl~~la~~t--- 432 (500)
... ..++.+|+++|..+ .+++.+.+ ||. ..+.+++++.++..+|++.+++... .-++..++.+++.+
T Consensus 168 ~~~-~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 244 (394)
T PRK00411 168 EYP-GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTARE 244 (394)
T ss_pred ccC-CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHh
Confidence 443 23688888888754 56777766 663 4789999999999999998875321 11223356666666
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
.| ..+.+.++|..|+..|..++...|+.+|+.+|++++.
T Consensus 245 ~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 245 HG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 44 4566678999999999999999999999999999873
No 75
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.72 E-value=4.4e-16 Score=151.01 Aligned_cols=205 Identities=16% Similarity=0.204 Sum_probs=138.3
Q ss_pred CCcCcccccC--ChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 226 TGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 226 ~~~~f~dv~G--~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
...+|++.++ .+.+.+.+++++. ...+.+++|+||||||||++|++++.++ +.++++++|+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 3567888873 4445555555432 1224589999999999999999998876 578999999888
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
.... .+++.... .+.+|+|||+|.+.. ..+..+.+..++..+.. ....+|+.++..+.
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~---------~~~~~~~L~~~l~~~~~---~~~~iIits~~~~~ 135 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAG---------QPEWQEALFHLYNRVRE---AGGRLLIAGRAAPA 135 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH---cCCeEEEECCCChH
Confidence 6532 23333332 235999999999832 11234455555554432 22334444433443
Q ss_pred CC---chhhcCCCCc--ceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 381 IL---DSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 381 ~L---d~aLlrpgRf--dr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
.+ ++.+.+ |+ ..++.+++|+.+++..+++.++.+..+. ++..+..++..++| +.+++.++++++...+...
T Consensus 136 ~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~ 212 (226)
T TIGR03420 136 QLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAA 212 (226)
T ss_pred HCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh
Confidence 33 266776 66 4689999999999999999876544332 22336788888888 9999999999988766555
Q ss_pred CCCCcCHHHHHHHH
Q 010809 455 GKAAISSKEIDDSI 468 (500)
Q Consensus 455 ~~~~It~~d~~~Ai 468 (500)
+ ..|+.+.+.+.+
T Consensus 213 ~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 213 K-RKITIPFVKEVL 225 (226)
T ss_pred C-CCCCHHHHHHHh
Confidence 5 569998887765
No 76
>PRK06893 DNA replication initiation factor; Validated
Probab=99.72 E-value=4.9e-16 Score=152.37 Aligned_cols=213 Identities=13% Similarity=0.117 Sum_probs=138.0
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se 299 (500)
...+..+|++.+|.+... .+..+.+.... .. ...++||||||||||+|++++|+++ +....+++.++
T Consensus 8 ~~~~~~~fd~f~~~~~~~-~~~~~~~~~~~--------~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 8 HQIDDETLDNFYADNNLL-LLDSLRKNFID--------LQ-QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCCcccccccccCChHH-HHHHHHHHhhc--------cC-CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 344577999999876532 12222211111 11 1258999999999999999999875 45666666653
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
.... ..++++... ...+|+|||++.+.. ..+.++.+..+++.+.. ....+++++++..|
T Consensus 78 ~~~~--------~~~~~~~~~--~~dlLilDDi~~~~~---------~~~~~~~l~~l~n~~~~--~~~~illits~~~p 136 (229)
T PRK06893 78 SQYF--------SPAVLENLE--QQDLVCLDDLQAVIG---------NEEWELAIFDLFNRIKE--QGKTLLLISADCSP 136 (229)
T ss_pred hhhh--------hHHHHhhcc--cCCEEEEeChhhhcC---------ChHHHHHHHHHHHHHHH--cCCcEEEEeCCCCh
Confidence 2211 112333332 346999999999832 33445566666665532 12234455555556
Q ss_pred CCCc---hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 380 DILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 380 ~~Ld---~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
..++ +.|.+..++...+.++.||.++|.+|++.++....+. ++..+..++.+.+| +.+.+.++++.....+..++
T Consensus 137 ~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 137 HALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred HHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC
Confidence 6554 7888833444688999999999999999877644433 23347889999997 89999999997654444334
Q ss_pred CCCcCHHHHHHHH
Q 010809 456 KAAISSKEIDDSI 468 (500)
Q Consensus 456 ~~~It~~d~~~Ai 468 (500)
+.||...+++++
T Consensus 216 -~~it~~~v~~~L 227 (229)
T PRK06893 216 -RKLTIPFVKEIL 227 (229)
T ss_pred -CCCCHHHHHHHh
Confidence 469999888775
No 77
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=6.2e-16 Score=150.78 Aligned_cols=203 Identities=16% Similarity=0.182 Sum_probs=138.4
Q ss_pred CCCCcCcccccC--ChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 224 PNTGVTFDDVAG--VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 224 ~~~~~~f~dv~G--~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
..++.+|+++.+ .+++...++++... ...+.+++|+||+|||||+||+++++++ +.+++++++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 345678999873 34454544444431 1234479999999999999999998865 7789999998
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++.+.+ .. .....+|+|||+|.+ +.+.+..+..++..+. .+...++|.+++.
T Consensus 80 ~~~~~~------------~~--~~~~~~liiDdi~~l-----------~~~~~~~L~~~~~~~~---~~~~~~vl~~~~~ 131 (227)
T PRK08903 80 SPLLAF------------DF--DPEAELYAVDDVERL-----------DDAQQIALFNLFNRVR---AHGQGALLVAGPA 131 (227)
T ss_pred HhHHHH------------hh--cccCCEEEEeChhhc-----------CchHHHHHHHHHHHHH---HcCCcEEEEeCCC
Confidence 765421 11 123568999999988 2234455556665543 2333334444443
Q ss_pred -CC--CCchhhcCCCCc--ceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 -AD--ILDSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 -~~--~Ld~aLlrpgRf--dr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
+. .+.+.|.+ || ...+.+++|+.+++..+++.......+. ++.-+..++..++| +.+++.++++.....|.
T Consensus 132 ~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~ 208 (227)
T PRK08903 132 APLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSL 208 (227)
T ss_pred CHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 21 35577776 77 4589999999999989988766544333 22347788889998 99999999998766664
Q ss_pred HcCCCCcCHHHHHHHHH
Q 010809 453 RRGKAAISSKEIDDSID 469 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~ 469 (500)
..+ ..||...+++++.
T Consensus 209 ~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 209 EQK-RPVTLPLLREMLA 224 (227)
T ss_pred HhC-CCCCHHHHHHHHh
Confidence 444 6799998888764
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.71 E-value=2.5e-16 Score=173.77 Aligned_cols=206 Identities=18% Similarity=0.294 Sum_probs=151.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------- 291 (500)
.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 34566789999999999999888877632 345578999999999999999999988662
Q ss_pred --------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 292 --------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
++.+++++ ..+.+.+|++.+.+.. +...|+||||+|.+. ...
T Consensus 76 C~~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------------~~a 135 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------------RHS 135 (647)
T ss_pred CHHHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------------HHH
Confidence 22222211 1123456776666532 345799999999992 346
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
.|.||+.|+. +...+++|.+|+.+..|.+.+++ |+ ..+.|..++.++..+.|+..+...++. ++..+..++..+
T Consensus 136 ~NALLKtLEE--Pp~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred HHHHHHHHHc--CCCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 7888888874 45578888888889999999999 87 689999999999998888877654443 234477889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.| +.++..+++..|... +...|+.+++...+
T Consensus 211 ~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 211 DG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 98 899999998876543 33447776665543
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.4e-16 Score=169.43 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=154.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~------------ 290 (500)
.++.+.+|+||+|++.+++.|...+.. .+.|+++||+||+|+|||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 456678999999999999988876653 245668999999999999999999986532
Q ss_pred ------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHH
Q 010809 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (500)
Q Consensus 291 ------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (500)
.++.+++++ ..+.+.+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------------~~A~ 133 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------------NSAF 133 (491)
T ss_pred HHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHhccccCCceEEEEeChHhCC--------------HHHH
Confidence 334444432 1234567887777643 235699999999982 2467
Q ss_pred HHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 010809 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (500)
Q Consensus 355 ~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~ 433 (500)
|.|+..++. ++..+++|.+|+.++.+.+.+++ |+. .+.+..++.++..+.++..+...+.. ++..+..+++.+.
T Consensus 134 NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 134 NALLKTLEE--PAPHVKFILATTEVKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSS 208 (491)
T ss_pred HHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888888884 44568888888888889999998 884 78999999999888888877665543 3344778899998
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
| +.+++.+.++.+..++ + ..||.+++++.
T Consensus 209 G-slR~alslLdqli~y~---~-~~It~e~V~~l 237 (491)
T PRK14964 209 G-SMRNALFLLEQAAIYS---N-NKISEKSVRDL 237 (491)
T ss_pred C-CHHHHHHHHHHHHHhc---C-CCCCHHHHHHH
Confidence 7 8999999998887654 2 36888888765
No 80
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.1e-16 Score=175.97 Aligned_cols=196 Identities=18% Similarity=0.217 Sum_probs=142.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEE
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------fi~ 294 (500)
.+++.+.+|+||+|++.+++.|+.++..- ++|..+||+||||||||++|+++|+.+++. +..
T Consensus 7 aeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~ 75 (944)
T PRK14949 7 ARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV 75 (944)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC
Confidence 45667889999999999999988776532 345568999999999999999999988763 111
Q ss_pred E-echhhHHh-------hh---hhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 295 I-SGSEFVEM-------FV---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 295 i-s~se~~~~-------~v---G~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
+ +|-.+.+. +- ..+...+|++.+.+.. ....|+||||+|.+. ...+|.||+
T Consensus 76 C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------------~eAqNALLK 141 (944)
T PRK14949 76 CSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------------RSSFNALLK 141 (944)
T ss_pred chHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------------HHHHHHHHH
Confidence 1 11111110 00 1223456666665532 334699999999992 356788888
Q ss_pred HhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 010809 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (500)
Q Consensus 360 emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sga 438 (500)
.|+. +...+++|.+|+.+..|.+.+++ |+ .++.|..++.++..+.|+..+...++. .+..+..|+..+.| +.+
T Consensus 142 tLEE--PP~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 142 TLEE--PPEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHhc--cCCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8884 45567788888888889899998 88 589999999999998888877654433 23347888999998 899
Q ss_pred HHHHHHHHHH
Q 010809 439 DLANLLNEAA 448 (500)
Q Consensus 439 dL~~lv~eAa 448 (500)
++.++|..|.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 9999998777
No 81
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=1.6e-15 Score=162.17 Aligned_cols=232 Identities=17% Similarity=0.232 Sum_probs=148.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~ 301 (500)
.+..+|++.+--+........+.+..+.+.. .+....++++||||+|+|||+|++++++++ +..++++++.+|.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~---~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~ 181 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ---GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT 181 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc---ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH
Confidence 4678999987333333222222222222110 011122479999999999999999999865 7899999998887
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC-
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD- 380 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~- 380 (500)
..+...-...-.+.|.... ..+++|+|||++.+.++ ...++.+..+++.+. .....+|++++..|.
T Consensus 182 ~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k---------~~~qeelf~l~N~l~---~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 EHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGK---------GATQEEFFHTFNSLH---TEGKLIVISSTCAPQD 248 (445)
T ss_pred HHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCC---------hhhHHHHHHHHHHHH---HCCCcEEEecCCCHHH
Confidence 6654332211122344332 34679999999998432 122333334433321 122345555544443
Q ss_pred --CCchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHH---HHH
Q 010809 381 --ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAI---LAG 452 (500)
Q Consensus 381 --~Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~---~A~ 452 (500)
.+++.|.+ ||. ..+.++.|+.++|..|++..+...++. ++..++.++....+ +.++|.+.++..+. .+.
T Consensus 249 l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 249 LKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence 56789998 996 588999999999999999988766543 23336678888886 88999999988853 232
Q ss_pred HcCCCCcCHHHHHHHHHHHHcCcC
Q 010809 453 RRGKAAISSKEIDDSIDRIVAGME 476 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~v~~g~~ 476 (500)
-.+ ..||.+++++++.......+
T Consensus 326 ~~~-~~i~~~~~~~~l~~~~~~~~ 348 (445)
T PRK12422 326 LSH-QLLYVDDIKALLHDVLEAAE 348 (445)
T ss_pred hhC-CCCCHHHHHHHHHHhhhccc
Confidence 233 45999999999988654433
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.2e-16 Score=171.62 Aligned_cols=213 Identities=17% Similarity=0.236 Sum_probs=152.5
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
+.+++.+.+|+||+|++.+++.|.+++..- +.|..+||+||+|+|||++|+++|+.+++.
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 445677889999999999999888877643 345578999999999999999999987641
Q ss_pred ---EEEE-echhh--------HHh--hhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 292 ---FFSI-SGSEF--------VEM--FVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 292 ---fi~i-s~se~--------~~~--~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
+-.+ +|..+ .+. ....+.+.+|++.+.+... ...|++|||+|.+. ...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------------~~a 140 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------------NTA 140 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------------HHH
Confidence 1000 11111 110 0012334677777766432 24699999999982 234
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t 432 (500)
.|.|+..++. +...+++|.+|+.+..+.+.+++ |+ .++.+..++.++..+.++..+.+.++.- +..+..+++.+
T Consensus 141 ~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s 215 (618)
T PRK14951 141 FNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAA 215 (618)
T ss_pred HHHHHHhccc--CCCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6778888874 34567888888888888888888 88 5899999999998888888776655442 33478889999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.| +.+++.+++..+... +...||.+++++.+
T Consensus 216 ~G-slR~al~lLdq~ia~----~~~~It~~~V~~~L 246 (618)
T PRK14951 216 RG-SMRDALSLTDQAIAF----GSGQLQEAAVRQML 246 (618)
T ss_pred CC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 88 888888888776654 34568877776543
No 83
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=3.2e-16 Score=172.73 Aligned_cols=214 Identities=19% Similarity=0.290 Sum_probs=154.5
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------E
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F 293 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pf-------i 293 (500)
..+++.+.+|+||+|++.+++.|...+.. .+.|+++||+||+|+|||++|+++|+.++++- -
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 34567788999999999999998888763 24566899999999999999999999876531 1
Q ss_pred EE-echhh--------HHh--hhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 294 SI-SGSEF--------VEM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 294 ~i-s~se~--------~~~--~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
.+ +|..+ .+. -...+...+|++++.+.. ....|+||||+|.+. ...++.||
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------------~~A~NALL 140 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------------KSAFNAML 140 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------------HHHHHHHH
Confidence 10 01111 000 012234567787776532 334799999999882 23567788
Q ss_pred HHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 010809 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sg 437 (500)
+.|+. ....+.+|.+|+.+..+.+.+++ |+ ..+.|+.++.++..+.|+..+...++. ++..+..|++.+.| +.
T Consensus 141 KtLEE--Pp~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 141 KTLEE--PPEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHh--CCCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 88874 34567888888888888888887 88 478888999999999998888766544 23347888999987 89
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+++.+++..+..+ +...|+.+++...+.
T Consensus 215 RdAlnLLDqaia~----g~g~It~e~V~~lLG 242 (709)
T PRK08691 215 RDALSLLDQAIAL----GSGKVAENDVRQMIG 242 (709)
T ss_pred HHHHHHHHHHHHh----cCCCcCHHHHHHHHc
Confidence 9999999887754 344688877766543
No 84
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.70 E-value=8.4e-16 Score=156.91 Aligned_cols=209 Identities=21% Similarity=0.309 Sum_probs=139.8
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.-+|.+++.+.+|+|++|++++++.+..++.. .+.|..+||+||||+|||++|+++|++.+.+++++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~ 76 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNG 76 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEecc
Confidence 34688899999999999999999988887752 2345567779999999999999999999999999998
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
++ . . +..-...+........ ...+++|+|||+|.+. ..+.+..+..++.+ . ..++.+|++|
T Consensus 77 ~~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~----------~~~~~~~L~~~le~---~--~~~~~~Ilt~ 138 (316)
T PHA02544 77 SD-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG----------LADAQRHLRSFMEA---Y--SKNCSFIITA 138 (316)
T ss_pred Cc-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc----------CHHHHHHHHHHHHh---c--CCCceEEEEc
Confidence 76 2 1 1111111222211111 1346899999999872 22334455444443 2 3456888899
Q ss_pred CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc---------CCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS---------NKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 377 N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~---------~~~l~~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
|.++.+++++++ ||. .+.++.|+.+++.++++..+. +.++.++ .+..++....| |++.+++..
T Consensus 139 n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~-al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 139 NNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMK-VLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred CChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHhcCC----CHHHHHHHH
Confidence 999999999999 995 789999999999877664322 2233222 24566655544 455665555
Q ss_pred HHHHHHcCCCCcCHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~ 466 (500)
...+. ...++..++..
T Consensus 211 ~~~~~---~~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAS---TGKIDAGILSE 226 (316)
T ss_pred HHHHc---cCCCCHHHHHH
Confidence 44432 23466655443
No 85
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=5.5e-16 Score=177.35 Aligned_cols=218 Identities=22% Similarity=0.297 Sum_probs=151.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-++++++|+++....+.+ .+.... ..+++|+||||||||++|+.+|... +..++.+
T Consensus 182 r~~~ld~~iGr~~ei~~~i~---~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l 249 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMID---ILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSL 249 (852)
T ss_pred cCCCCCcccCCHHHHHHHHH---HHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEe
Confidence 45689999999986554444 332221 2278999999999999999999875 3457778
Q ss_pred echhhHH--hhhhhhhhHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFVE--MFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~~--~~vG~~~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+.+.+.. .+.|..+.+++.+|+.++. ..++||||||+|.+.+.++.. ++.+ .-|.|+..+. +..+.+
T Consensus 250 ~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~--~~~d----~~n~Lkp~l~----~G~l~~ 319 (852)
T TIGR03345 250 DLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA--GQGD----AANLLKPALA----RGELRT 319 (852)
T ss_pred ehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc--cccc----HHHHhhHHhh----CCCeEE
Confidence 8777653 6788888999999999865 467999999999997665321 1222 1222333332 567999
Q ss_pred EEeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCC----C-ccccHHHHHHhCCCC-----cH
Q 010809 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF----D-ADVSLDVIAMRTPGF-----SG 437 (500)
Q Consensus 373 IaaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l----~-~dvdl~~la~~t~G~-----sg 437 (500)
|+||+..+ .+|++|.| ||+ .|.++.|+.+++.+||+.+.+.... . .+..+..++..+.+| -+
T Consensus 320 IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LP 396 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLP 396 (852)
T ss_pred EEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCc
Confidence 99998744 48999999 996 8999999999999998766543321 1 233466666766654 34
Q ss_pred HHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (500)
Q Consensus 438 adL~~lv~eAa~~A~r-~~~~~It~~d~~~Ai 468 (500)
...-.++.+|+..... .....+..+++++.+
T Consensus 397 DKAIdlldea~a~~~~~~~~~p~~~~~~~~~~ 428 (852)
T TIGR03345 397 DKAVSLLDTACARVALSQNATPAALEDLRRRI 428 (852)
T ss_pred cHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Confidence 5566889988765543 333445555555444
No 86
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=8.8e-16 Score=166.40 Aligned_cols=204 Identities=21% Similarity=0.311 Sum_probs=150.2
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p----------- 291 (500)
+++.+.+|+||+|++.+++.|..++..- +.|..+||+||||||||++|+++|+.+.+.
T Consensus 6 ~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred HhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 5667889999999999999998887642 345568999999999999999999987531
Q ss_pred ------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHH
Q 010809 292 ------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLN 355 (500)
Q Consensus 292 ------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~ 355 (500)
++.+++++ ..+...+|++.+.+.. ..+.||+|||+|.+. ...++
T Consensus 75 sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------------~~a~n 134 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------------KSAFN 134 (504)
T ss_pred hhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------HHHHH
Confidence 33333321 1233456666555432 346799999999872 34577
Q ss_pred HHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCC
Q 010809 356 QLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPG 434 (500)
Q Consensus 356 ~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G 434 (500)
.|+..++.. ...+++|.+|+.+..+.+.+.+ |+. .+.++.|+.++..+.++..+...++. ++..+..++..+.|
T Consensus 135 aLLk~LEep--~~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 135 ALLKTLEEP--PEHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHhC--CCCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 888888743 3467788888888899999988 885 79999999999999998888765544 23347788888887
Q ss_pred CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 435 FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 435 ~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+.+++.+.++.+... ...||.+++.+++
T Consensus 210 -dlR~aln~Lekl~~~-----~~~It~~~V~~~l 237 (504)
T PRK14963 210 -AMRDAESLLERLLAL-----GTPVTRKQVEEAL 237 (504)
T ss_pred -CHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 777777777776432 2368888877654
No 87
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=8.5e-16 Score=168.68 Aligned_cols=204 Identities=22% Similarity=0.325 Sum_probs=152.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC------------
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------ 290 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~------------ 290 (500)
.++.+.+|+||+|++++++.|+..+..- +.++.+||+||+|||||++|+.+|+.+.+
T Consensus 8 ~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C 76 (559)
T PRK05563 8 RKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC 76 (559)
T ss_pred HHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 5667889999999999999998887642 34557899999999999999999998753
Q ss_pred ------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHH
Q 010809 291 ------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (500)
Q Consensus 291 ------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (500)
.++.++++. +.+...+|++.+.+.. ....|++|||+|.+. ...+
T Consensus 77 ~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------------~~a~ 136 (559)
T PRK05563 77 EICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------------TGAF 136 (559)
T ss_pred HHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------------HHHH
Confidence 233333211 2344567788777643 235699999999982 2467
Q ss_pred HHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCC
Q 010809 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTP 433 (500)
Q Consensus 355 ~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~ 433 (500)
|.|+..++. ++..+++|.+|+.++.+.+.+++ |+. .+.++.|+.++..+.++..++..++.- +..+..++....
T Consensus 137 naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 137 NALLKTLEE--PPAHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 788888874 45567888888888999999998 885 688999999999888888776655432 334778888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
| +.+++.+++..+...+ ...||.+++.++
T Consensus 212 G-~~R~al~~Ldq~~~~~----~~~It~~~V~~v 240 (559)
T PRK05563 212 G-GMRDALSILDQAISFG----DGKVTYEDALEV 240 (559)
T ss_pred C-CHHHHHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 7 8888888888776542 345877766544
No 88
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.69 E-value=2.9e-15 Score=147.57 Aligned_cols=207 Identities=13% Similarity=0.155 Sum_probs=137.6
Q ss_pred CCCCcCccccc-C-ChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 224 PNTGVTFDDVA-G-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 224 ~~~~~~f~dv~-G-~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
-.+..+|++.+ | ...+...+..+.. .+. +.+++|+||||||||+|++++++++ +..+.+++..
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---~~~---------~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---QEH---------SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD 82 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---CCC---------CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH
Confidence 44567899887 4 3344444444332 111 2379999999999999999998865 4557777776
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC-eEEEEeeC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG-IIVIAATN 377 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~-viVIaaTN 377 (500)
++... ..++++.... ..+|+|||+|.+. +..+.++.+..++..+-. +.+ .+++++++
T Consensus 83 ~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~---------~~~~~~~~lf~l~n~~~e---~g~~~li~ts~~ 140 (235)
T PRK08084 83 KRAWF--------VPEVLEGMEQ--LSLVCIDNIECIA---------GDELWEMAIFDLYNRILE---SGRTRLLITGDR 140 (235)
T ss_pred HHhhh--------hHHHHHHhhh--CCEEEEeChhhhc---------CCHHHHHHHHHHHHHHHH---cCCCeEEEeCCC
Confidence 64321 1122222222 2589999999983 233445556666655421 233 35555555
Q ss_pred CCCC---CchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 378 RADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 378 ~~~~---Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
.|.. +.+.|++ |+. .++.++.|+.+++.++++.++...++. ++.-++.++.+.+| +.+.+.++++.....+
T Consensus 141 ~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~ 217 (235)
T PRK08084 141 PPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRAS 217 (235)
T ss_pred ChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHH
Confidence 5554 5789999 886 489999999999999999866554433 23347889999998 9999999999865344
Q ss_pred HHcCCCCcCHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSI 468 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai 468 (500)
.. .++.||...+++++
T Consensus 218 l~-~~~~it~~~~k~~l 233 (235)
T PRK08084 218 IT-AQRKLTIPFVKEIL 233 (235)
T ss_pred Hh-cCCCCCHHHHHHHH
Confidence 33 34559998888775
No 89
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.69 E-value=1e-15 Score=158.47 Aligned_cols=208 Identities=22% Similarity=0.351 Sum_probs=150.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
+.++..+.+|+|++|++++++.+.+.+.. .+.|+.+||+||||+|||++|+++|+.+..+
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 45667788999999999999988887753 2345579999999999999999999886432
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.+++.+ ..+...++++++.+... ...|++|||+|.+. ..
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------------~~ 132 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------------KS 132 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------------HH
Confidence 23333221 11234567777766432 23599999999882 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
..+.|+..++. ++..+++|.+|+.++.+.+++++ |+. .+.+++|+.++..++++.+++..+.. ++..+..++..
T Consensus 133 ~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 AFNALLKTLEE--PPEHVVFILATTEPHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred HHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56778888764 34567778888888888889988 884 78999999999999999888765543 22346777888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+.| +.+.+.+.++.+...+ + ..||.+++++++.
T Consensus 208 ~~g-~~~~a~~~lekl~~~~---~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 208 ADG-SLRDALSLLDQLISFG---N-GNITYEDVNELLG 240 (355)
T ss_pred cCC-ChHHHHHHHHHHHhhc---C-CCCCHHHHHHHhC
Confidence 876 7777888777776543 2 3488888876653
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.69 E-value=1.5e-15 Score=170.55 Aligned_cols=212 Identities=24% Similarity=0.287 Sum_probs=144.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
+.+...+.+|+|++|++........+...+... + ..+++|+||||||||++|+++|+..+.+|+.+++...
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~~--------~-~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~ 88 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKAD--------R-VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA 88 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcC--------C-CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh
Confidence 445666789999999999886433333323221 1 2279999999999999999999999999998887531
Q ss_pred HHhhhhhhhhHHHHHHHHHH-----hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 301 VEMFVGVGASRVRDLFKKAK-----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~-----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
+.+.+++.++.+. .....+|||||+|.+ +...+ +.|+..++ +..+++|++
T Consensus 89 -------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L-----------n~~qQ---daLL~~lE----~g~IiLI~a 143 (725)
T PRK13341 89 -------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRF-----------NKAQQ---DALLPWVE----NGTITLIGA 143 (725)
T ss_pred -------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhC-----------CHHHH---HHHHHHhc----CceEEEEEe
Confidence 1123344444431 124569999999998 22233 34455444 345777776
Q ss_pred eC--CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc-------CCCCC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 376 TN--RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-------NKKFD-ADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 376 TN--~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~-------~~~l~-~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
|+ ....+++++++ |+ ..+.+++++.+++..+++..+. ...+. ++..++.++...+| +.+++.++++
T Consensus 144 TTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le 219 (725)
T PRK13341 144 TTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALE 219 (725)
T ss_pred cCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 64 33468899998 76 4789999999999999998775 21221 23336788888887 8899999999
Q ss_pred HHHHHHHHcC--CCCcCHHHHHHHHHH
Q 010809 446 EAAILAGRRG--KAAISSKEIDDSIDR 470 (500)
Q Consensus 446 eAa~~A~r~~--~~~It~~d~~~Ai~~ 470 (500)
.|+..+...+ ...|+.+++++++.+
T Consensus 220 ~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 220 LAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHhcccCCCCceeccHHHHHHHHHH
Confidence 8775442222 223788888888766
No 91
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=7.4e-16 Score=168.06 Aligned_cols=213 Identities=18% Similarity=0.256 Sum_probs=151.9
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEE
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------fi~ 294 (500)
.+++.+.+|+||+|++.+++.|...+..- +.++.+||+||||+|||++|+++|+.+++. +-.
T Consensus 7 ~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~ 75 (527)
T PRK14969 7 ARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV 75 (527)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 44566789999999999999888877632 345578999999999999999999988652 111
Q ss_pred E-echh--------hHHh--hhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 295 I-SGSE--------FVEM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 295 i-s~se--------~~~~--~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
+ +|.. +.+. -...+...+|++.+.+.. ....|++|||+|.+. ....|.||+
T Consensus 76 C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------------~~a~naLLK 141 (527)
T PRK14969 76 CSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------------KSAFNAMLK 141 (527)
T ss_pred CHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------------HHHHHHHHH
Confidence 1 0000 0000 001234557777776643 234699999999982 245678888
Q ss_pred HhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHH
Q 010809 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGA 438 (500)
Q Consensus 360 emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~G~sga 438 (500)
.++. ++..+++|.+|+.++.+.+.+++ |+ ..+.++.++.++..+.+...+...+... +..+..++..+.| +.+
T Consensus 142 ~LEe--pp~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 142 TLEE--PPEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHhC--CCCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8875 34567888888888888888888 87 4899999999998888887776544432 3346788888887 888
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 439 DLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 439 dL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
++.++++.|... +...|+.+++.+.+.
T Consensus 216 ~al~lldqai~~----~~~~I~~~~v~~~~~ 242 (527)
T PRK14969 216 DALSLLDQAIAY----GGGTVNESEVRAMLG 242 (527)
T ss_pred HHHHHHHHHHHh----cCCCcCHHHHHHHHC
Confidence 888998887654 455688888776553
No 92
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.68 E-value=3.1e-15 Score=160.41 Aligned_cols=221 Identities=16% Similarity=0.252 Sum_probs=150.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhhH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFV 301 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~~ 301 (500)
+.+|++.+--+.....+..+......|. ....+++|||++|+|||+|++|+++++ +..++++++.+|.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~-------~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPG-------ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcC-------cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4789998744433323322222333332 122469999999999999999998854 5788999999998
Q ss_pred Hhhhhhhhh---HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 302 EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 302 ~~~vG~~~~---~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
..+...-.. .+..+.+.. ..+.+|+|||++.+.. .+..++.+..+++.+.. ..+.+|+++...
T Consensus 184 ~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~---------k~~~~e~lf~l~N~~~~---~~k~iIltsd~~ 249 (450)
T PRK14087 184 RKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY---------KEKTNEIFFTIFNNFIE---NDKQLFFSSDKS 249 (450)
T ss_pred HHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC---------CHHHHHHHHHHHHHHHH---cCCcEEEECCCC
Confidence 876543221 222222222 3457999999999832 23344555555555432 223344444444
Q ss_pred CC---CCchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCC---CccccHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 010809 379 AD---ILDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKF---DADVSLDVIAMRTPGFSGADLANLLNEAAIL 450 (500)
Q Consensus 379 ~~---~Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l---~~dvdl~~la~~t~G~sgadL~~lv~eAa~~ 450 (500)
|+ .+++.|.+ ||.. ++.++.|+.++|.+|++.+++..++ -++..++.|+....| +++.+.++|+.+...
T Consensus 250 P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 250 PELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred HHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 44 45788888 8865 7889999999999999999876543 233347889999998 999999999999866
Q ss_pred HHHcC-CCCcCHHHHHHHHHHH
Q 010809 451 AGRRG-KAAISSKEIDDSIDRI 471 (500)
Q Consensus 451 A~r~~-~~~It~~d~~~Ai~~v 471 (500)
+.... ...||.+.+++++...
T Consensus 327 a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 327 SQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HhcccCCCCCCHHHHHHHHhhc
Confidence 65553 2579999999999876
No 93
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.68 E-value=2.4e-15 Score=172.28 Aligned_cols=198 Identities=24% Similarity=0.344 Sum_probs=142.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEe
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSIS 296 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~is 296 (500)
.-.+++++|.++..+.+.+++.. +.+.+++|+||||||||++|+++|.+. +.+++.++
T Consensus 175 ~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 175 DGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred cCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 34689999999988887776542 234479999999999999999999975 47899999
Q ss_pred chhhH--HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 010809 297 GSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (500)
Q Consensus 297 ~se~~--~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIa 374 (500)
.+.+. ..|.|..+++++.+++.++...++||||||+|.+.+..+. .+ .....+.|. ..+. +..+.+|+
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~--~g-~~~~a~lLk---p~l~----rg~l~~Ig 312 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAA--EG-AIDAANILK---PALA----RGELQCIG 312 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCC--CC-cccHHHHhH---HHHh----CCCcEEEE
Confidence 98887 4678888999999999998888899999999999765432 11 222222322 2222 56789999
Q ss_pred eeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc------CCCCCccccHHHHHHhCCCCc-----HH
Q 010809 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS------NKKFDADVSLDVIAMRTPGFS-----GA 438 (500)
Q Consensus 375 aTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~------~~~l~~dvdl~~la~~t~G~s-----ga 438 (500)
+|+..+ ..|+++.+ ||+ .+.++.|+.++...|++.... +..+. +..+..++..+.+|. +.
T Consensus 313 aTt~~ey~~~ie~D~aL~r--Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~-deal~~i~~ls~~yi~~r~lPd 388 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALER--RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSIS-DKALEAAAKLSDQYIADRFLPD 388 (821)
T ss_pred eCCHHHHHHHHhcCHHHHh--cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhhccCccccCch
Confidence 998754 47899999 996 689999999999898875432 12222 223455555555432 34
Q ss_pred HHHHHHHHHHHH
Q 010809 439 DLANLLNEAAIL 450 (500)
Q Consensus 439 dL~~lv~eAa~~ 450 (500)
..-.++.+|+..
T Consensus 389 kaidlld~a~a~ 400 (821)
T CHL00095 389 KAIDLLDEAGSR 400 (821)
T ss_pred HHHHHHHHHHHH
Confidence 445666666543
No 94
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=1.3e-15 Score=166.99 Aligned_cols=207 Identities=20% Similarity=0.267 Sum_probs=148.0
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
+.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||||||||++|+++|+.+.+.
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 456677889999999999999888877632 234479999999999999999999988652
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.+++.. ..+.+.+|.+.+.+. .....||||||+|.+. ..
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt--------------~~ 134 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT--------------RE 134 (624)
T ss_pred ccHHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC--------------HH
Confidence 33333321 112233444433332 2345799999999982 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
.++.|+..++. ....+++|.+||.++.+.+.+++ |+. .+.|+.++.++..++|+..+...... ++..+..++..
T Consensus 135 a~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~ 209 (624)
T PRK14959 135 AFNALLKTLEE--PPARVTFVLATTEPHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARR 209 (624)
T ss_pred HHHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46778888774 34568888888888888888888 885 78999999999998888877655432 33347788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+.| +.+++.+++..++ ..+...|+.+++.+++
T Consensus 210 s~G-dlR~Al~lLeqll----~~g~~~It~d~V~~~l 241 (624)
T PRK14959 210 AAG-SVRDSMSLLGQVL----ALGESRLTIDGARGVL 241 (624)
T ss_pred cCC-CHHHHHHHHHHHH----HhcCCCcCHHHHHHHh
Confidence 887 7777777777653 2345578888766544
No 95
>PRK08727 hypothetical protein; Validated
Probab=99.67 E-value=9e-15 Score=143.86 Aligned_cols=208 Identities=18% Similarity=0.227 Sum_probs=137.7
Q ss_pred CCCCcCcccccCChHH-HHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 010809 224 PNTGVTFDDVAGVDEA-KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~-k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se 299 (500)
..+..+|++.++.++. ...+..+ ... .....++|+||+|||||+|+++++.++ +..+.+++..+
T Consensus 12 ~~~~~~f~~f~~~~~n~~~~~~~~---~~~---------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~ 79 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGLLAQLQAL---AAG---------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA 79 (233)
T ss_pred CCCcCChhhccCCcHHHHHHHHHH---Hhc---------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH
Confidence 4456799998866543 2222111 111 112359999999999999999997654 67788888766
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee-CC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-NR 378 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT-N~ 378 (500)
+... +.+.++... ...+|+|||+|.+.. ..+.+..+..+++.... + +..+|.|+ ..
T Consensus 80 ~~~~--------~~~~~~~l~--~~dlLiIDDi~~l~~---------~~~~~~~lf~l~n~~~~---~-~~~vI~ts~~~ 136 (233)
T PRK08727 80 AAGR--------LRDALEALE--GRSLVALDGLESIAG---------QREDEVALFDFHNRARA---A-GITLLYTARQM 136 (233)
T ss_pred hhhh--------HHHHHHHHh--cCCEEEEeCcccccC---------ChHHHHHHHHHHHHHHH---c-CCeEEEECCCC
Confidence 5433 233444443 346999999998832 22334555566665532 2 33344444 45
Q ss_pred CCCC---chhhcCCCCc--ceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 ADIL---DSALLRPGRF--DRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 ~~~L---d~aLlrpgRf--dr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
|+.+ +++|.+ || ...+.++.|+.+++.+|++.++....+. ++..+..++..++| +.+.+.++++.....+.
T Consensus 137 p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~ 213 (233)
T PRK08727 137 PDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESL 213 (233)
T ss_pred hhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6544 789988 86 3478999999999999999877544433 23347788998887 77778788887665455
Q ss_pred HcCCCCcCHHHHHHHHHH
Q 010809 453 RRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~ 470 (500)
..+ +.||...+++.+.+
T Consensus 214 ~~~-~~it~~~~~~~l~~ 230 (233)
T PRK08727 214 AAK-RRVTVPFLRRVLEE 230 (233)
T ss_pred HhC-CCCCHHHHHHHHhh
Confidence 444 46999998887754
No 96
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.67 E-value=7.3e-16 Score=176.68 Aligned_cols=167 Identities=23% Similarity=0.366 Sum_probs=127.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-++++++|.++..+.+.+++.. .. ..+++|+||||||||++|+++|..+ +.+++.+
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r---~~---------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l 240 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR---RT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 240 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc---CC---------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEE
Confidence 345799999998865544444432 21 2268999999999999999999987 7899999
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+.+.+. .++.|..+.+++.+|+.+.. ..++||||||+|.+.+.+++ .++. ...+.|...+ .+..+.+
T Consensus 241 ~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~--~~~~-d~~~~lkp~l-------~~g~l~~ 310 (857)
T PRK10865 241 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAM-DAGNMLKPAL-------ARGELHC 310 (857)
T ss_pred ehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC--ccch-hHHHHhcchh-------hcCCCeE
Confidence 888876 45788889999999998644 56899999999999765432 1222 2333333332 2568999
Q ss_pred EEeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC
Q 010809 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK 417 (500)
Q Consensus 373 IaaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~ 417 (500)
|++|+..+ .+|+++.| ||+ .|.++.|+.+++..|++.+....
T Consensus 311 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~ 357 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERY 357 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhh
Confidence 99999876 48999999 998 68899999999999998776543
No 97
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.66 E-value=6.5e-15 Score=149.83 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=141.7
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi 293 (500)
.+|.+++.+.+|+|++|.+++++.+...++.-. .| +++|+||||||||++++++++++. .+++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~-----------~~-~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKN-----------MP-HLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCC-----------CC-eEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 468889999999999999999998887764211 12 589999999999999999999862 3455
Q ss_pred EEechhhHHhhhhhhhhHHHHHHHHHHh------CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~lf~~a~~------~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
.+++++-. +...+++.+..... ..+.+|+|||+|.+. .+.. +.|+..++....
T Consensus 73 ~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~-----------~~~~---~~L~~~le~~~~- 131 (319)
T PRK00440 73 ELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT-----------SDAQ---QALRRTMEMYSQ- 131 (319)
T ss_pred Eecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC-----------HHHH---HHHHHHHhcCCC-
Confidence 55544321 11112222222211 235699999999982 2222 344444554333
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~e 446 (500)
...+|.++|.+..+.+++.+ |+. .+.+++++.++...+++.+++..+.. ++..+..++..+.| +.+.+.+.++.
T Consensus 132 -~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 -NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred -CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 34566677777777778888 775 68999999999999999888765542 33357888888877 66666666665
Q ss_pred HHHHHHHcCCCCcCHHHHHHHHH
Q 010809 447 AAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 447 Aa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
++.. ...||.+++.+++.
T Consensus 207 ~~~~-----~~~it~~~v~~~~~ 224 (319)
T PRK00440 207 AAAT-----GKEVTEEAVYKITG 224 (319)
T ss_pred HHHc-----CCCCCHHHHHHHhC
Confidence 4432 35689888887764
No 98
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.5e-15 Score=163.52 Aligned_cols=206 Identities=20% Similarity=0.326 Sum_probs=148.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV----------- 290 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~----------- 290 (500)
.+++.+.+|+||+|++.+++.|...+..- +.|..+||+||||+|||++|+++|+.+.+
T Consensus 7 a~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (546)
T PRK14957 7 ARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK 75 (546)
T ss_pred HHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 45567789999999999999888777532 34557899999999999999999997754
Q ss_pred -------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 291 -------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 291 -------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
.++.+++.. ..+.+.++++.+.+.. ....|++|||+|.+. ...
T Consensus 76 C~sC~~i~~~~~~dlieidaas------~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------------~~a 135 (546)
T PRK14957 76 CENCVAINNNSFIDLIEIDAAS------RTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------------KQS 135 (546)
T ss_pred cHHHHHHhcCCCCceEEeeccc------ccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------------HHH
Confidence 122222210 1123445666665532 345699999999982 235
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
.+.||..++. ++..+++|.+|+.+..+.+.+++ |+ ..+++..++.++..+.++..++..+.. ++..+..++..+
T Consensus 136 ~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 136 FNALLKTLEE--PPEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred HHHHHHHHhc--CCCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 6777777774 34567777777778888888888 88 589999999999888888776654443 333467888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.| +.+++.++++.+...+ + ..|+.+++++++
T Consensus 211 ~G-dlR~alnlLek~i~~~---~-~~It~~~V~~~l 241 (546)
T PRK14957 211 KG-SLRDALSLLDQAISFC---G-GELKQAQIKQML 241 (546)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHHH
Confidence 87 8888888888777543 2 468888877643
No 99
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.7e-15 Score=166.73 Aligned_cols=213 Identities=22% Similarity=0.314 Sum_probs=154.3
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---Ee
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS 296 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~---is 296 (500)
.+.+++++.+|+||+|++.+++.|+..+..- +.++.+||+||+|+|||++|+++|..+.++-.. -.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 4566778899999999999999988887632 345578999999999999999999987653110 01
Q ss_pred chhhHH------h-h--h---hhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH
Q 010809 297 GSEFVE------M-F--V---GVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (500)
Q Consensus 297 ~se~~~------~-~--v---G~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e 360 (500)
|..... . + - ..+...+|++.+.+.. ....|++|||+|.+. ...++.||..
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------------~~A~NALLKt 141 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------------KSAFNALLKT 141 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------------HHHHHHHHHH
Confidence 111110 0 0 0 1234557788777653 335799999999982 2367788888
Q ss_pred hcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHH
Q 010809 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGAD 439 (500)
Q Consensus 361 md~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~G~sgad 439 (500)
|+. ++..+++|.+|+.++.|.+.+++ |+. ++.+.+++.++..+.++..+...++.- +..+..++..+.| +.++
T Consensus 142 LEE--PP~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~ 215 (725)
T PRK07133 142 LEE--PPKHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRD 215 (725)
T ss_pred hhc--CCCceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 874 45578888888889999999998 885 899999999999888887766555432 2337788888888 8888
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 440 LANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 440 L~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
+.++++.++.++ ...|+.++++++
T Consensus 216 AlslLekl~~y~----~~~It~e~V~el 239 (725)
T PRK07133 216 ALSIAEQVSIFG----NNKITLKNVEEL 239 (725)
T ss_pred HHHHHHHHHHhc----cCCCCHHHHHHH
Confidence 888888766542 234888777664
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.66 E-value=2.3e-15 Score=170.90 Aligned_cols=205 Identities=20% Similarity=0.228 Sum_probs=147.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------- 291 (500)
.+++.+.+|+||+|++.+++.|+..+.. .+.++.+||+||+|||||++|+.+|+.+.+.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 3567788999999999999998887763 2345578999999999999999999988642
Q ss_pred ----------------EEEEechhhHHhhhhhhhhHHHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHH
Q 010809 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (500)
Q Consensus 292 ----------------fi~is~se~~~~~vG~~~~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~ 351 (500)
|+.+++.. ..+.+.+|++.+.+ ......|+||||+|.| + .
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas------~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l-----------t---~ 134 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAAS------HGGVDDARELRERAFFAPAESRYKIFIIDEAHMV-----------T---P 134 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEechhhc-----------C---H
Confidence 12222111 01234455554443 2244579999999999 2 2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHH
Q 010809 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAM 430 (500)
Q Consensus 352 ~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~ 430 (500)
+..|.||+.|+. ....+++|++|+.++.|.+.|++ |+ .++.|..++.++..++|+..++..++.. +..+..++.
T Consensus 135 ~a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~ 209 (824)
T PRK07764 135 QGFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIR 209 (824)
T ss_pred HHHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 456778887774 34567888888888888889998 88 4889999999998888888876655442 233677888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~ 466 (500)
...| +.+++.++++.....+ +...||.+++..
T Consensus 210 ~sgG-dlR~Al~eLEKLia~~---~~~~IT~e~V~a 241 (824)
T PRK07764 210 AGGG-SVRDSLSVLDQLLAGA---GPEGVTYERAVA 241 (824)
T ss_pred HcCC-CHHHHHHHHHHHHhhc---CCCCCCHHHHHH
Confidence 8877 8888888888765332 345577776543
No 101
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.9e-15 Score=164.38 Aligned_cols=205 Identities=19% Similarity=0.227 Sum_probs=149.7
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------- 291 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p----------- 291 (500)
+++.+.+|+||+|++.+++.|...+.. .+.|+.+||+||+|||||++|+++|+.+++.
T Consensus 5 ~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 5 RKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 566788999999999999998888763 2345568999999999999999999987642
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.++++. ..+.+.+|++.+.+.. ....|++|||+|.+. ..
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas------~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------------~~ 133 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAAS------HGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------------TA 133 (584)
T ss_pred HHHHHhhcccCCCceEEEecccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------------HH
Confidence 22222211 1133456666555422 234699999999982 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
..|.||..|+. +...+++|.+|+.++.+.+.+++ |+ .++.|..++.++..+.++..++..+.. ++..+..++..
T Consensus 134 A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~ 208 (584)
T PRK14952 134 GFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRA 208 (584)
T ss_pred HHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67788888874 45578888888888999999998 86 489999999999888888877765543 23346777887
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
..| +.+++.++++.++..+ +...||.+++.+.
T Consensus 209 s~G-dlR~aln~Ldql~~~~---~~~~It~~~v~~l 240 (584)
T PRK14952 209 GGG-SPRDTLSVLDQLLAGA---ADTHVTYQRALGL 240 (584)
T ss_pred cCC-CHHHHHHHHHHHHhcc---CCCCcCHHHHHHH
Confidence 877 8888889988876443 3456887776654
No 102
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.65 E-value=1.1e-14 Score=152.53 Aligned_cols=240 Identities=22% Similarity=0.306 Sum_probs=170.7
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~s 298 (500)
-.+..+|++.+.-+.-.....-.......|.. .-..++||||+|.|||+|++|+++++ +..+++++.+
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-------~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGG-------AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCC-------cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 45678999998766665555544444444431 12369999999999999999998876 3468999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
+|...++......--+-|++-. .-.+++||||+.+.++... ..+.-.++|.+.. ..+-+|+.+...
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~-----qeefFh~FN~l~~-------~~kqIvltsdr~ 218 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKERT-----QEEFFHTFNALLE-------NGKQIVLTSDRP 218 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCChhH-----HHHHHHHHHHHHh-------cCCEEEEEcCCC
Confidence 9998887665554444555554 3469999999999544211 2333344444443 344566666555
Q ss_pred CCC---CchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 379 ADI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 379 ~~~---Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
|.. +++.|.+ ||.+ .+.+.+||.+.|..||+......++. ++.-...++...+. +.++|..+++.....|.
T Consensus 219 P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 219 PKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred chhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 654 5688888 9988 77899999999999999977665544 33346778888875 99999999999998887
Q ss_pred HcCCCCcCHHHHHHHHHHHHcCcCCCCCCChhhHHHHH
Q 010809 453 RRGKAAISSKEIDDSIDRIVAGMEGTVMTDGKSKSLVA 490 (500)
Q Consensus 453 r~~~~~It~~d~~~Ai~~v~~g~~~~~~~~~~ek~~~a 490 (500)
..++ .||.+.+.+++.......+ +.. .+...+.||
T Consensus 296 ~~~~-~iTi~~v~e~L~~~~~~~~-~it-ie~I~~~Va 330 (408)
T COG0593 296 FTKR-AITIDLVKEILKDLLRAGE-KIT-IEDIQKIVA 330 (408)
T ss_pred hcCc-cCcHHHHHHHHHHhhcccc-cCC-HHHHHHHHH
Confidence 7666 7999999999998877666 322 233345555
No 103
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.6e-15 Score=163.94 Aligned_cols=207 Identities=18% Similarity=0.279 Sum_probs=149.3
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 290 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~--------- 290 (500)
.+.+++.+.+|+|++|++.+++.+...+.. .+.|+++||+||+|+|||++|+++|..+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456677889999999999999988877642 234568999999999999999999998743
Q ss_pred ---------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHH
Q 010809 291 ---------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (500)
Q Consensus 291 ---------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~ 351 (500)
.++.++++. ..+...+|++.+.+... ...|++|||+|.+. .
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt-----------~--- 133 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS-----------T--- 133 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC-----------H---
Confidence 122222211 12334577777665432 23699999999982 1
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 010809 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (500)
Q Consensus 352 ~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~ 430 (500)
...+.|+..++. ++..+++|.+|+.+..+.+++++ |+. .+.++.|+.++....++..+...+.. ++..+..++.
T Consensus 134 ~A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~ 208 (605)
T PRK05896 134 SAWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIAD 208 (605)
T ss_pred HHHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 245677777774 34567888888888999999998 885 78999999999988888877654432 2334778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
.+.| +.+++.++++.++..+ +. .|+.+++.+.
T Consensus 209 lS~G-dlR~AlnlLekL~~y~---~~-~It~e~V~el 240 (605)
T PRK05896 209 LADG-SLRDGLSILDQLSTFK---NS-EIDIEDINKT 240 (605)
T ss_pred HcCC-cHHHHHHHHHHHHhhc---CC-CCCHHHHHHH
Confidence 8887 8888888888755443 32 3888776663
No 104
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.9e-15 Score=160.02 Aligned_cols=213 Identities=21% Similarity=0.317 Sum_probs=149.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEE
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFF 293 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-------pfi 293 (500)
+...+.+.+|+|++|++.+.+.|...+..- +.++.+||+||+|+|||++|+.+|..+++ |+-
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 445667889999999999999888877532 23446899999999999999999998753 121
Q ss_pred EE-echhhHH-----hh-----hhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 294 SI-SGSEFVE-----MF-----VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 294 ~i-s~se~~~-----~~-----vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
.+ +|..+.. .+ ...+...+|.+.+.+.. ..+.|++|||+|.+. ....+.|+
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------------~~a~naLL 140 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------------KEAFNALL 140 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------------HHHHHHHH
Confidence 11 1111111 00 01223445666655532 345799999999882 23457777
Q ss_pred HHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcH
Q 010809 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSG 437 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~G~sg 437 (500)
..++. ++..+++|.+|+.++.+.+++++ |+. .+.+++|+.++...+++.+++..++.. +..+..++..+.| +.
T Consensus 141 k~LEe--pp~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~l 214 (486)
T PRK14953 141 KTLEE--PPPRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GM 214 (486)
T ss_pred HHHhc--CCCCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 77774 34456777777778888888888 885 789999999999999998887665542 2346788888887 88
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+++.++++.+...+ ...||.+++++++
T Consensus 215 r~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 215 RDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 88888888876542 3458888877754
No 105
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.4e-15 Score=155.94 Aligned_cols=215 Identities=20% Similarity=0.347 Sum_probs=148.0
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
.+.+++.+.+|+|++|++.+++.+.+.+.. .+.|.++|||||||+|||++|+++|+....+.....+.+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 355677889999999999999888777753 134568999999999999999999998754221111110
Q ss_pred hH------HhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 010809 300 FV------EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (500)
Q Consensus 300 ~~------~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~ 369 (500)
+. +.....+...++.+++.+.. ..+.||+|||+|.+. ...++.++..++. +...
T Consensus 75 ~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------------~~~~~~ll~~le~--~~~~ 138 (367)
T PRK14970 75 FSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------------SAAFNAFLKTLEE--PPAH 138 (367)
T ss_pred CCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------------HHHHHHHHHHHhC--CCCc
Confidence 00 00011223566777776542 235699999999882 1346677777764 2345
Q ss_pred eEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 010809 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (500)
Q Consensus 370 viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa 448 (500)
.++|.+++.+..+.+++.+ |+. .+.++.|+.++...++...+.+.+.. ++..++.++..+.| +.+.+.+.++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 6666677777888899988 774 78999999999888888777665542 33457778888876 7777777777666
Q ss_pred HHHHHcCCCCcCHHHHHHHHH
Q 010809 449 ILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 449 ~~A~r~~~~~It~~d~~~Ai~ 469 (500)
.++ +.. ||.+++++.+.
T Consensus 215 ~y~---~~~-it~~~v~~~~~ 231 (367)
T PRK14970 215 TFC---GKN-ITRQAVTENLN 231 (367)
T ss_pred Hhc---CCC-CCHHHHHHHhC
Confidence 554 333 88877776654
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=2.7e-15 Score=165.36 Aligned_cols=205 Identities=20% Similarity=0.348 Sum_probs=151.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------- 291 (500)
.+++.+.+|+||+|++++++.|...+.. .+.|+.+||+||+|+|||++|+++|+.+.++
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 3566788999999999999998887753 2346678999999999999999999987542
Q ss_pred --------------EEEEechhhHHhhhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 292 --------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
++++++.+ ..+.+.+|++.+.+... ...|++|||+|.+. ...
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------------~~a 135 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------------TNA 135 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------------HHH
Confidence 22332211 12334677777766432 23699999999982 245
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
.|.|+..|+. +...+++|.+|+.++.|.+.+++ |+. .+.+..++.++....+...++..++. ++..+..++..+
T Consensus 136 ~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 136 FNALLKTLEE--PPPHVKFIFATTEPHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred HHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 6788888874 45578888888999999999998 885 78999999998888887777655543 234477888888
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
.| +.+++.+++..+..+. + ..|+.+++...
T Consensus 211 ~G-~lr~al~~Ldqliay~---g-~~It~edV~~l 240 (576)
T PRK14965 211 DG-SMRDSLSTLDQVLAFC---G-DAVGDDDVAEL 240 (576)
T ss_pred CC-CHHHHHHHHHHHHHhc---c-CCCCHHHHHHH
Confidence 88 8888888888766554 2 34888777654
No 107
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.65 E-value=5.2e-15 Score=155.89 Aligned_cols=182 Identities=19% Similarity=0.341 Sum_probs=129.2
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p----------------- 291 (500)
.|++|+|++.+++.|++.+..-+. .+...+.+.|+++||+||||+|||++|+++|..+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~--~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA--DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc--cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 589999999999999999986433 2334456678899999999999999999999976443
Q ss_pred ------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh
Q 010809 292 ------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (500)
Q Consensus 292 ------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em 361 (500)
++.+.... ...+...+|++++.+.. ....|+||||+|.+. . ...|.||+.|
T Consensus 81 ~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~-----------~---~aanaLLk~L 141 (394)
T PRK07940 81 AGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT-----------E---RAANALLKAV 141 (394)
T ss_pred cCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC-----------H---HHHHHHHHHh
Confidence 11121110 11233457888887754 234699999999992 2 2347788888
Q ss_pred cCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHH
Q 010809 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADL 440 (500)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL 440 (500)
+. ++.++++|.+|+.++.+.+++++ |+ ..+.+++|+.++..++|.... ... ......++..+.|..+..+
T Consensus 142 Ee--p~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 142 EE--PPPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRAR 211 (394)
T ss_pred hc--CCCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHH
Confidence 74 34456666666668999999999 88 589999999998877776322 333 3346678888888555443
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=6.1e-15 Score=162.50 Aligned_cols=215 Identities=20% Similarity=0.272 Sum_probs=155.6
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE----
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI---- 295 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i---- 295 (500)
.+.+++.+.+|+||+|++.+++.|...+.. .+.|.++||+||+|+|||++|+++|+.+.+.....
T Consensus 13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~ 81 (598)
T PRK09111 13 VLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGP 81 (598)
T ss_pred hHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCC
Confidence 355677788999999999999998887763 24566899999999999999999999886532111
Q ss_pred ---------echhhHH--------hh--hhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 296 ---------SGSEFVE--------MF--VGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 296 ---------s~se~~~--------~~--vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
+|..+.+ .- ...+...+|++++.+... ...|++|||+|.+. ..
T Consensus 82 ~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------------~~ 147 (598)
T PRK09111 82 TIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------------TA 147 (598)
T ss_pred ccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------------HH
Confidence 1111111 00 012345678888776432 35799999999982 24
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~ 431 (500)
..|.|++.|+. +...+++|.+|+.++.+.+.+++ |+. .+.+..++.++..+.++..+++.+..- +..+..++..
T Consensus 148 a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~ 222 (598)
T PRK09111 148 AFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARA 222 (598)
T ss_pred HHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56778888874 34567777778888888888888 884 799999999999998888776655432 2346778888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+.| +.+++.+.++.+... +...||.+++++.+.
T Consensus 223 a~G-dlr~al~~Ldkli~~----g~g~It~e~V~~llg 255 (598)
T PRK09111 223 AEG-SVRDGLSLLDQAIAH----GAGEVTAEAVRDMLG 255 (598)
T ss_pred cCC-CHHHHHHHHHHHHhh----cCCCcCHHHHHHHhC
Confidence 887 888888888877644 234699988886654
No 109
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9.2e-15 Score=158.54 Aligned_cols=206 Identities=21% Similarity=0.274 Sum_probs=149.0
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC----------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---------- 290 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~---------- 290 (500)
+.+++.+.+|+||+|++.+++.|...++.- +.|+.+||+||+|+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 345677889999999999999988887532 34567899999999999999999997632
Q ss_pred --------------CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 291 --------------PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 291 --------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
.++.+++++ ..+.+.+|++.+.... ....|++|||+|.+ + ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~L-----------t---~~ 132 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAAS------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHML-----------T---KE 132 (535)
T ss_pred ccHHHHHHhhcCCCeEEEecccc------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccC-----------C---HH
Confidence 122222211 1123567777665432 22369999999998 2 24
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
.++.||..++.. +..+.+|.+|+.+..+.+++++ |+ ..+.+..++.++..+.++..++..+.. ++..+..++..
T Consensus 133 A~NALLK~LEEp--p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 133 AFNALLKTLEEP--PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred HHHHHHHHHhhc--CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 567778888753 4557777778888999999999 87 488999999998888888777655443 23457788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
..| +.+++.+++..|...+ ...||.+++.+.
T Consensus 208 s~G-dlR~alnlLdqai~~~----~~~It~~~V~~~ 238 (535)
T PRK08451 208 GNG-SLRDTLTLLDQAIIYC----KNAITESKVADM 238 (535)
T ss_pred cCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHHH
Confidence 887 8889999998877654 234777666543
No 110
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.64 E-value=2.8e-15 Score=151.82 Aligned_cols=209 Identities=28% Similarity=0.453 Sum_probs=140.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechhh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---fi~is~se~ 300 (500)
.-.+-+++|.+|+++...+ ..++..+-... ++| +++||||||||||+||+.++....-+ |+.+++.
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~ieq~-------~ip-SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt-- 199 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN-------RIP-SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSAT-- 199 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHHHcC-------CCC-ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecc--
Confidence 3345689999999988765 33333322111 122 69999999999999999999988666 7777663
Q ss_pred HHhhhhhhhhHHHHHHHHHHh-----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 301 VEMFVGVGASRVRDLFKKAKE-----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~-----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
..+...+|++|+++++ ....|||||||+.+- ...+.+ +|-..+ +..|++|++
T Consensus 200 -----~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN-----------ksQQD~---fLP~VE----~G~I~lIGA 256 (554)
T KOG2028|consen 200 -----NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN-----------KSQQDT---FLPHVE----NGDITLIGA 256 (554)
T ss_pred -----ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh-----------hhhhhc---ccceec----cCceEEEec
Confidence 3445678999999865 235799999999982 222223 333332 567888987
Q ss_pred e--CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC-----C---CCC------ccccHHHHHHhCCCCcHHH
Q 010809 376 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----K---KFD------ADVSLDVIAMRTPGFSGAD 439 (500)
Q Consensus 376 T--N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~-----~---~l~------~dvdl~~la~~t~G~sgad 439 (500)
| |..-.|..+|++ |+ +++.+.....++...||.....- . ++. .+--++.++..+.| ..+-
T Consensus 257 TTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG-DaR~ 332 (554)
T KOG2028|consen 257 TTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG-DARA 332 (554)
T ss_pred ccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc-hHHH
Confidence 7 455588999999 88 68889988999888888864321 1 111 12236788888888 3333
Q ss_pred HHHHHHHHH-HHHHHcC---CCCcCHHHHHHHHHH
Q 010809 440 LANLLNEAA-ILAGRRG---KAAISSKEIDDSIDR 470 (500)
Q Consensus 440 L~~lv~eAa-~~A~r~~---~~~It~~d~~~Ai~~ 470 (500)
.-|.++.++ +...|.| +..++.+|+++++.+
T Consensus 333 aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhh
Confidence 335555443 2333444 346888888888775
No 111
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.64 E-value=1.2e-14 Score=141.85 Aligned_cols=202 Identities=20% Similarity=0.326 Sum_probs=129.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~ 300 (500)
++.||++.+-.+.-+..+.-+.....++.. ....++||||+|+|||+|.+|+++++ +..++|+++.+|
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~-------~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f 75 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENPGE-------RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEF 75 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHSTTT-------SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcCCC-------CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHH
Confidence 578999996434333333322222333321 12258999999999999999998864 678999999999
Q ss_pred HHhhhhhhh-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 301 VEMFVGVGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 301 ~~~~vG~~~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
...+...-. ..+.++.+..+ ...+|+||++|.+.. ....++.+..+++.+. .+.+.+|+++...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~---------~~~~q~~lf~l~n~~~---~~~k~li~ts~~~P 141 (219)
T PF00308_consen 76 IREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAG---------KQRTQEELFHLFNRLI---ESGKQLILTSDRPP 141 (219)
T ss_dssp HHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTT---------HHHHHHHHHHHHHHHH---HTTSEEEEEESS-T
T ss_pred HHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcC---------chHHHHHHHHHHHHHH---hhCCeEEEEeCCCC
Confidence 887654332 22333333333 346999999999943 2234555555555543 24455666665555
Q ss_pred CC---CchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 380 DI---LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 380 ~~---Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
.. +++.|.+ ||.. .+.+..||.+.|.+|++..+...++.- +.-.+.++...++ +.++|..+++.-..++
T Consensus 142 ~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 142 SELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAYA 216 (219)
T ss_dssp TTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHHH
T ss_pred ccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHHh
Confidence 54 5677888 8877 889999999999999999887666542 2336778888886 9999999999877665
No 112
>PRK05642 DNA replication initiation factor; Validated
Probab=99.64 E-value=2.6e-14 Score=140.76 Aligned_cols=213 Identities=16% Similarity=0.198 Sum_probs=140.4
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se 299 (500)
...+..+|++.+.... ....+.++.+... .+.....+++|+||+|+|||+|++++++++ +..+++++..+
T Consensus 11 ~~~~~~tfdnF~~~~~--~~a~~~~~~~~~~-----~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~ 83 (234)
T PRK05642 11 RLRDDATFANYYPGAN--AAALGYVERLCEA-----DAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE 83 (234)
T ss_pred CCCCcccccccCcCCh--HHHHHHHHHHhhc-----cccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence 3455678999873322 2233333222110 011123579999999999999999998754 67889999988
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
+.... ..+.+..+.. .+|+|||++.+.. ....++.+..+++.+. .+...++++++..|
T Consensus 84 ~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~---------~~~~~~~Lf~l~n~~~---~~g~~ilits~~~p 141 (234)
T PRK05642 84 LLDRG--------PELLDNLEQY--ELVCLDDLDVIAG---------KADWEEALFHLFNRLR---DSGRRLLLAASKSP 141 (234)
T ss_pred HHhhh--------HHHHHhhhhC--CEEEEechhhhcC---------ChHHHHHHHHHHHHHH---hcCCEEEEeCCCCH
Confidence 77531 2233333332 5899999998832 2233455666665542 23456666666555
Q ss_pred C---CCchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 010809 380 D---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (500)
Q Consensus 380 ~---~Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r 453 (500)
. ...+.|.+ ||. ..+.+..|+.+++.++++..+....+. ++.-++.++.+.++ +.+.+.++++.-...+..
T Consensus 142 ~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~ 218 (234)
T PRK05642 142 RELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQ 218 (234)
T ss_pred HHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 4 34688888 885 477889999999999999666544332 33447888999987 999999999988754444
Q ss_pred cCCCCcCHHHHHHHH
Q 010809 454 RGKAAISSKEIDDSI 468 (500)
Q Consensus 454 ~~~~~It~~d~~~Ai 468 (500)
.++.||..-+++++
T Consensus 219 -~~~~it~~~~~~~L 232 (234)
T PRK05642 219 -AQRKLTIPFLKETL 232 (234)
T ss_pred -cCCcCCHHHHHHHh
Confidence 33559988888765
No 113
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.64 E-value=4.8e-15 Score=170.32 Aligned_cols=202 Identities=21% Similarity=0.322 Sum_probs=144.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-.++.++|.++..+.+.+++. .. ...+++|+||||||||++|+++|... +.+++.+
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~---r~---------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l 235 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLS---RR---------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL 235 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHh---cC---------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe
Confidence 34578999999986555554443 22 12368999999999999999999875 6788999
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+.+.+. ..|.|..+.+++.+|+.+.. ..++||||||+|.+.+.+.. .+.. ...+.|...+ .+..+.+
T Consensus 236 ~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~---~~~~---d~~~~Lk~~l----~~g~i~~ 305 (852)
T TIGR03346 236 DMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKA---EGAM---DAGNMLKPAL----ARGELHC 305 (852)
T ss_pred eHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCC---cchh---HHHHHhchhh----hcCceEE
Confidence 888776 46788888999999999865 35899999999999754322 1111 1223232222 3567999
Q ss_pred EEeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-----ccHHHHHHhCCCC-----cH
Q 010809 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-----VSLDVIAMRTPGF-----SG 437 (500)
Q Consensus 373 IaaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-----vdl~~la~~t~G~-----sg 437 (500)
|++|+..+ .+|+++.| ||+ .|.++.|+.+++..||+........... ..+...+..+.+| -|
T Consensus 306 IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lP 382 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLP 382 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCc
Confidence 99998764 47999999 997 6899999999999999987665443322 2344555555443 35
Q ss_pred HHHHHHHHHHHHHHH
Q 010809 438 ADLANLLNEAAILAG 452 (500)
Q Consensus 438 adL~~lv~eAa~~A~ 452 (500)
...-.++++|+..+.
T Consensus 383 dkAidlld~a~a~~~ 397 (852)
T TIGR03346 383 DKAIDLIDEAAARIR 397 (852)
T ss_pred hHHHHHHHHHHHHHH
Confidence 566688888886553
No 114
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.63 E-value=5e-15 Score=147.53 Aligned_cols=197 Identities=23% Similarity=0.258 Sum_probs=138.7
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC------
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------ 291 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p------ 291 (500)
...|++++.+.+|+|++|++.+.+.|...+..-..| +.|||||||||||+.|+++|+++..|
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp------------~~LFyGPpGTGKTStalafar~L~~~~~~~~r 90 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP------------HYLFYGPPGTGKTSTALAFARALNCEQLFPCR 90 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc------------eEEeeCCCCCcHhHHHHHHHHHhcCccccccc
Confidence 345788899999999999999999999888752222 69999999999999999999998652
Q ss_pred EEEEechhhHHhhhhhhhhHHHHHHHHHHh---------CCC-eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh
Q 010809 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKE---------NAP-CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (500)
Q Consensus 292 fi~is~se~~~~~vG~~~~~vr~lf~~a~~---------~~p-~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em 361 (500)
+...+.|+....-+ ....++ -|.+... ..| .|++|||.|.+. ..+.+.|..-|
T Consensus 91 vl~lnaSderGisv--vr~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------sdaq~aLrr~m 153 (346)
T KOG0989|consen 91 VLELNASDERGISV--VREKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------SDAQAALRRTM 153 (346)
T ss_pred hhhhcccccccccc--hhhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhh--------------HHHHHHHHHHH
Confidence 23334444432211 111111 1222211 112 699999999993 34556677777
Q ss_pred cCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHHH
Q 010809 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGADL 440 (500)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~la~~t~G~sgadL 440 (500)
|.+. ..+++|..||..+.+...+.+ |+. .+.|+..+.+...+.|+..+.+.++.-+. .+..++..++| +-++.
T Consensus 154 E~~s--~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G-dLR~A 227 (346)
T KOG0989|consen 154 EDFS--RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG-DLRRA 227 (346)
T ss_pred hccc--cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 7654 457888889999999999999 886 67777777766667777777666655333 37888988888 67777
Q ss_pred HHHHHHHHH
Q 010809 441 ANLLNEAAI 449 (500)
Q Consensus 441 ~~lv~eAa~ 449 (500)
...++.++.
T Consensus 228 it~Lqsls~ 236 (346)
T KOG0989|consen 228 ITTLQSLSL 236 (346)
T ss_pred HHHHHHhhc
Confidence 777776665
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.8e-15 Score=156.69 Aligned_cols=217 Identities=16% Similarity=0.238 Sum_probs=148.9
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS------ 294 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~------ 294 (500)
..++..+.+|++|+|++.+++.|+..++. .+.|.++||+||||+|||++|+++|+++.+.-..
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 34567788999999999999988877763 2456679999999999999999999988652100
Q ss_pred ----E------echhhHH-------hhhh---hhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHH
Q 010809 295 ----I------SGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (500)
Q Consensus 295 ----i------s~se~~~-------~~vG---~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~ 350 (500)
- +|..+.. .+.+ .+.+.++++.+.+.. ....|+||||+|.+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~-------------- 140 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS-------------- 140 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------------
Confidence 0 0111110 0111 123456666665532 234699999999982
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHH
Q 010809 351 EQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIA 429 (500)
Q Consensus 351 ~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la 429 (500)
....+.|+..++. ++...++|.+|+.+..+-+++.+ |+. .++++.++.++..+.++..++..+.. ++..++.++
T Consensus 141 ~~~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~ 215 (397)
T PRK14955 141 IAAFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIG 215 (397)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1345667777763 33456666677777788888887 775 78999999998888888777554432 233477888
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHH
Q 010809 430 MRTPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (500)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A~r-~~~~~It~~d~~~Ai 468 (500)
..+.| +.+.+.+.++.+..++.. .....|+.+++++.+
T Consensus 216 ~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 216 RKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 88887 888888888877766532 234579988887655
No 116
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.63 E-value=1.6e-14 Score=160.47 Aligned_cols=217 Identities=18% Similarity=0.212 Sum_probs=147.2
Q ss_pred cccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCce-EEEEcCCCChHHHHHHHHHHhc----------CCCEEEEec
Q 010809 230 FDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISG 297 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~g-vLL~GppGTGKT~LAralA~e~----------~~pfi~is~ 297 (500)
-+.|.|.++..++|..++.. +.. ..|.+ ++|+|+||||||++++.+..++ .+.+++|+|
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg---------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ---------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc---------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 46778888888888777765 322 12334 5799999999999999997755 256789999
Q ss_pred hhhHHh----------hhhh-------hhhHHHHHHHHHH--hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 298 SEFVEM----------FVGV-------GASRVRDLFKKAK--ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 298 se~~~~----------~vG~-------~~~~vr~lf~~a~--~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
..+... +.+. ....+..+|.... ....+||+|||||.|..+ .+..|..|+
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK-----------~QDVLYnLF 893 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK-----------TQKVLFTLF 893 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc-----------HHHHHHHHH
Confidence 643321 1011 1234556666552 233579999999999532 346677777
Q ss_pred HHhcCCCCCCCeEEEEeeCC---CCCCchhhcCCCCcce-EEEecCCCHHHHHHHHHHHhcCCC-CCccccHHHHHH---
Q 010809 359 TEMDGFEGNTGIIVIAATNR---ADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-FDADVSLDVIAM--- 430 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~---~~~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~l~~~~-l~~dvdl~~la~--- 430 (500)
.... .....++||+++|. ++.|++.+.+ ||.. .+.|++++.+++.+||+.++.... .-++..++.+|+
T Consensus 894 R~~~--~s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA 969 (1164)
T PTZ00112 894 DWPT--KINSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA 969 (1164)
T ss_pred HHhh--ccCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh
Confidence 6543 23457899999986 5577888888 6654 588899999999999999887532 112333666666
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
...| ..+..-++|..|+.. ++...|+.+|+.+|++++...
T Consensus 970 q~SG-DARKALDILRrAgEi---kegskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 970 NVSG-DIRKALQICRKAFEN---KRGQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred hcCC-HHHHHHHHHHHHHhh---cCCCccCHHHHHHHHHHHHhh
Confidence 3344 455555677777764 344589999999999876444
No 117
>PRK06620 hypothetical protein; Validated
Probab=99.62 E-value=1.9e-14 Score=139.93 Aligned_cols=198 Identities=14% Similarity=0.219 Sum_probs=130.3
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCC--ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p--~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
..++.+|++++-.+.-...+..+..+...+ +. .| ..++||||||+|||+|++++++..+..++ +.....
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~------~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~~ 79 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF------GV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFFN 79 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc------cc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhhc
Confidence 455678999876554333333333322222 11 13 47999999999999999999998875332 211111
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
.+.+ ....+++|||||.+ . +..+..+++.+. .+.+.++++++..|..
T Consensus 80 -----------~~~~-----~~~d~lliDdi~~~-----------~---~~~lf~l~N~~~---e~g~~ilits~~~p~~ 126 (214)
T PRK06620 80 -----------EEIL-----EKYNAFIIEDIENW-----------Q---EPALLHIFNIIN---EKQKYLLLTSSDKSRN 126 (214)
T ss_pred -----------hhHH-----hcCCEEEEeccccc-----------h---HHHHHHHHHHHH---hcCCEEEEEcCCCccc
Confidence 0111 12368999999955 1 123444444433 2445677777765553
Q ss_pred --CchhhcCCCCcce--EEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 382 --LDSALLRPGRFDR--QVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 382 --Ld~aLlrpgRfdr--~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
+ ++|++ |+.. ++.++.||.+++..+++.++....+. ++..++.++...+| +.+.+.++++.....+...+
T Consensus 127 l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~- 201 (214)
T PRK06620 127 FTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALISK- 201 (214)
T ss_pred cch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHcC-
Confidence 5 78888 8864 78999999999999998887654433 33347889999987 99999999998665454444
Q ss_pred CCcCHHHHHHHH
Q 010809 457 AAISSKEIDDSI 468 (500)
Q Consensus 457 ~~It~~d~~~Ai 468 (500)
+.||...+++++
T Consensus 202 ~~it~~~~~~~l 213 (214)
T PRK06620 202 RKITISLVKEVL 213 (214)
T ss_pred CCCCHHHHHHHh
Confidence 569998888765
No 118
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.5e-14 Score=158.61 Aligned_cols=212 Identities=19% Similarity=0.268 Sum_probs=150.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEE
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFS 294 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------fi~ 294 (500)
..++.+.+|+||+|++.+++.|+..+.. .+.|+.+||+||||+|||++|+++|+.+.++ +-.
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 3456788999999999999988887763 2345679999999999999999999987642 211
Q ss_pred E-echhhHHh-------hhh---hhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 295 I-SGSEFVEM-------FVG---VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 295 i-s~se~~~~-------~vG---~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
+ +|..+.+. +-| .+.+.++++.+.+. .....|++|||+|.+. ...+|.|+.
T Consensus 76 C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------------~~a~naLLK 141 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------------NSAFNALLK 141 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------------HHHHHHHHH
Confidence 1 11111000 011 12345566655442 2345799999999982 246778888
Q ss_pred HhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHH
Q 010809 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGA 438 (500)
Q Consensus 360 emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sga 438 (500)
.++. ++..+++|.+|+.+..+.+++++ |+. .+.+..++.++..++++..++..+.. ++..+..++....| +.+
T Consensus 142 ~LEe--pp~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR 215 (563)
T PRK06647 142 TIEE--PPPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVR 215 (563)
T ss_pred hhcc--CCCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8874 45678888888888889999998 885 78999999999998888877554433 23447778888887 888
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 439 DLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 439 dL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
++.++++.+...+ + ..||.+++.+++
T Consensus 216 ~alslLdklis~~---~-~~It~e~V~~ll 241 (563)
T PRK06647 216 DAYTLFDQVVSFS---D-SDITLEQIRSKM 241 (563)
T ss_pred HHHHHHHHHHhhc---C-CCCCHHHHHHHh
Confidence 8888888776543 2 458887776643
No 119
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.62 E-value=1.8e-14 Score=152.47 Aligned_cols=221 Identities=24% Similarity=0.308 Sum_probs=133.7
Q ss_pred Ccc-cccCChHHHHHHHHHHHH----hcChhhhhhhCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 229 TFD-DVAGVDEAKQDFMEVVEF----LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 229 ~f~-dv~G~de~k~~L~e~v~~----l~~p~~~~~~G~~-~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++ .|+|++++|+.+...+.. +........ ... ...++||+||||||||++|+++|..+++||+.++++.+.+
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~-~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~ 146 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDD-DVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTE 146 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhccccccc-ccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 344 389999999999776632 211100000 111 2358999999999999999999999999999999998764
Q ss_pred -hhhhhhhhH-HHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-----------
Q 010809 303 -MFVGVGASR-VRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------- 365 (500)
Q Consensus 303 -~~vG~~~~~-vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~----------- 365 (500)
.|+|..... +..++..+ ....++||||||||.+..++.......+-..+.+.+.||..||+-.
T Consensus 147 ~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~ 226 (412)
T PRK05342 147 AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKH 226 (412)
T ss_pred CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCc
Confidence 567664333 34444332 2346789999999999876432111111112345555666665421
Q ss_pred CCCCeEEEEeeCCCC----------------------------------------------------CCchhhcCCCCcc
Q 010809 366 GNTGIIVIAATNRAD----------------------------------------------------ILDSALLRPGRFD 393 (500)
Q Consensus 366 ~~~~viVIaaTN~~~----------------------------------------------------~Ld~aLlrpgRfd 393 (500)
+....++|.|+|... -+.|+++. |+|
T Consensus 227 ~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld 304 (412)
T PRK05342 227 PQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLP 304 (412)
T ss_pred CCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCC
Confidence 112355666655400 02344444 999
Q ss_pred eEEEecCCCHHHHHHHHHH----Hhc-------CCCCC---ccccHHHHHHh--CCCCcHHHHHHHHHHHHHHHH
Q 010809 394 RQVTVDVPDIRGRTEILKV----HGS-------NKKFD---ADVSLDVIAMR--TPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~----~l~-------~~~l~---~dvdl~~la~~--t~G~sgadL~~lv~eAa~~A~ 452 (500)
..+.+...+.++..+|+.. .++ ..+.. .+.-++.|++. ..++-.+.|+.+++....-..
T Consensus 305 ~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 305 VVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred eeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 9999999999999998873 221 12222 11224556654 344446667777766554443
No 120
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=2.1e-14 Score=154.09 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=145.2
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------- 291 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p--------- 291 (500)
..++..+.+|+||+|++.+++.|...+.. .+.|+.+||+||||+|||++|+++|+.+.++
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 34566788999999999999988887753 2345679999999999999999999977442
Q ss_pred ----------------EEEEechhhHHhhhhhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHH
Q 010809 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (500)
Q Consensus 292 ----------------fi~is~se~~~~~vG~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~ 351 (500)
++.+++.+ ..+.+.++++.+.+. .....|++|||+|.+. .
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt--------------~ 135 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGAS------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT--------------K 135 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC--------------H
Confidence 22222211 012234444443332 2446799999999982 2
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 010809 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (500)
Q Consensus 352 ~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~ 430 (500)
...+.|+..++. ++..+++|.+||.+..+.+++++ |+. .++++.++.++..+.+...++..+.. ++..+..++.
T Consensus 136 ~~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~ 210 (451)
T PRK06305 136 EAFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIAR 210 (451)
T ss_pred HHHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346778888875 34567788888888889999998 885 78999999999888888776655433 2334778888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.+.| +.+++.+.++..... .+ ..|+.+++++++
T Consensus 211 ~s~g-dlr~a~~~Lekl~~~---~~-~~It~~~V~~l~ 243 (451)
T PRK06305 211 AAQG-SLRDAESLYDYVVGL---FP-KSLDPDSVAKAL 243 (451)
T ss_pred HcCC-CHHHHHHHHHHHHHh---cc-CCcCHHHHHHHH
Confidence 8887 666666666655433 23 348888776554
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.8e-14 Score=158.12 Aligned_cols=208 Identities=18% Similarity=0.282 Sum_probs=144.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE----E--
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS----I-- 295 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~----i-- 295 (500)
.+++.+.+|++++|++++++.|...+..- +.+.++||+||+|+|||++|+++|+.+.+.... -
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 35667789999999999999988888642 234479999999999999999999988652110 0
Q ss_pred -ech-----------hhH--HhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHH
Q 010809 296 -SGS-----------EFV--EMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (500)
Q Consensus 296 -s~s-----------e~~--~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (500)
.|. ++. +.....+.+.+|++++.+.. ....|+||||+|.+. ....+.|
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------------~~a~naL 141 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------------TAAFNAL 141 (620)
T ss_pred cccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------------HHHHHHH
Confidence 011 010 00112345678888877643 234699999999982 2456788
Q ss_pred HHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCc
Q 010809 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFS 436 (500)
Q Consensus 358 L~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~s 436 (500)
|..++. +...+++|++|+.++.+.+.+++ |+. .+.++.++.++....+...+.+.+.. .+..+..++..+.| +
T Consensus 142 LK~LEe--Pp~~tvfIL~t~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~ 215 (620)
T PRK14948 142 LKTLEE--PPPRVVFVLATTDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-G 215 (620)
T ss_pred HHHHhc--CCcCeEEEEEeCChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-C
Confidence 888874 44567888888888888889988 884 78898898888777776666544332 22337788888887 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 437 GADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
.+++.++++...+.. ..||.+++.
T Consensus 216 lr~A~~lLeklsL~~-----~~It~e~V~ 239 (620)
T PRK14948 216 LRDAESLLDQLSLLP-----GPITPEAVW 239 (620)
T ss_pred HHHHHHHHHHHHhcc-----CCCCHHHHH
Confidence 677777777654331 236665544
No 122
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.60 E-value=5.3e-14 Score=140.73 Aligned_cols=186 Identities=26% Similarity=0.321 Sum_probs=120.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh------hHHhhhhhhhhHH-H--------------------HHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE------FVEMFVGVGASRV-R--------------------DLFKK 318 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se------~~~~~vG~~~~~v-r--------------------~lf~~ 318 (500)
+++|+||||||||++|+++|...+.||+.++|.. +...+.+.....+ . .++..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 7999999999999999999999999999998753 2222222111111 0 12222
Q ss_pred HHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc----C-------CCCCCCeEEEEeeCCCC-----CC
Q 010809 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G-------FEGNTGIIVIAATNRAD-----IL 382 (500)
Q Consensus 319 a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd----~-------~~~~~~viVIaaTN~~~-----~L 382 (500)
++ ...+|+|||||.+ +.+.+..|..++.+-. + +..++++.||+|+|... .+
T Consensus 103 ~~--~g~~lllDEi~r~-----------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l 169 (262)
T TIGR02640 103 VR--EGFTLVYDEFTRS-----------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHET 169 (262)
T ss_pred HH--cCCEEEEcchhhC-----------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecc
Confidence 22 2359999999997 4455556666554311 0 01234678999999753 56
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHH---HH--h----CCCCcHHHHHHHHHHHHHHHHH
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVI---AM--R----TPGFSGADLANLLNEAAILAGR 453 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~l---a~--~----t~G~sgadL~~lv~eAa~~A~r 453 (500)
++++++ || ..+.++.|+.++..+|++.+.. ..++ ..+.+ +. + ....+ .+..+.-|...+..
T Consensus 170 ~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~---~r~~i~~~~~~~~~ 239 (262)
T TIGR02640 170 QDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSG---LRASLMIAEVATQQ 239 (262)
T ss_pred cHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCc---HHHHHHHHHHHHHc
Confidence 889999 98 5899999999999999998752 2221 11111 11 1 11223 44444444444455
Q ss_pred cCCCCcCHHHHHHHHHHHHcC
Q 010809 454 RGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 454 ~~~~~It~~d~~~Ai~~v~~g 474 (500)
..+..++.+||.+.+..++.+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 240 DIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred CCCCCCCcHHHHHHHHHHhcc
Confidence 667889999999999888754
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-14 Score=158.01 Aligned_cols=164 Identities=29% Similarity=0.426 Sum_probs=125.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH--------
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-------- 302 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-------- 302 (500)
.|-.|++++|+.+.|.+.-.+.... .+- .-++|+||||+|||+|++.+|+.++.+|+.++.....+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~-----~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK-----LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc-----CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 5789999999998887765332221 111 25889999999999999999999999999998765433
Q ss_pred -hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC-----CC--------CCC
Q 010809 303 -MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (500)
Q Consensus 303 -~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~-----~~--------~~~ 368 (500)
.|+|..+.++-+-..++....| +++|||||.++..-.. +. -..||.-+|- |. .-+
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rG-----DP-----aSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRG-----DP-----ASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCC-----Ch-----HHHHHhhcCHhhcCchhhccccCccchh
Confidence 5888888888888888877765 7788999999654322 11 1223333331 11 123
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l 414 (500)
.|++|||+|..+.++.+|+. |+. +|.+.-++.+|..+|-+.|+
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RME-iI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RME-VIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--cee-eeeecCCChHHHHHHHHHhc
Confidence 69999999999999999999 995 99999999999999999887
No 124
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.3e-14 Score=156.18 Aligned_cols=215 Identities=16% Similarity=0.252 Sum_probs=147.9
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE---------
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF--------- 293 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi--------- 293 (500)
+++.+.+|+||+|++.+++.|+..+.. .+.|.++||+||+|+|||++|+++|+.+.+.--
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 456788999999999999988886652 245568999999999999999999998866210
Q ss_pred --E-----EechhhHH-------hhhh---hhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 294 --S-----ISGSEFVE-------MFVG---VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 294 --~-----is~se~~~-------~~vG---~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
. -+|..+.. .+.+ .+.+.++++.+.+.. ....|++|||+|.+. ..
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------------~~ 142 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------------TA 142 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------------HH
Confidence 0 01111110 0111 123456666666532 234699999999982 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~ 431 (500)
..+.|+..++. +...+++|.+|+.+..+.+.+++ |. ..+.+..++.++....++..++..+.. ++..++.++..
T Consensus 143 a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 143 AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 46778888874 33456666677777888888988 77 489999999998888887766544432 33457788888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHH-cCCCCcCHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGR-RGKAAISSKEIDDSI 468 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r-~~~~~It~~d~~~Ai 468 (500)
+.| +.+++.+.++....++.. .....|+.+++.+.+
T Consensus 218 s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 218 AQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred hCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 887 777777777776655521 224568888777655
No 125
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=2.2e-14 Score=154.09 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=161.7
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------EEEE
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSI 295 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------fi~i 295 (500)
.++.+.+|+|++|++.+...|.+.+..-+-. .+.||+||.|||||++||.+|+.+++. +..+
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~ri~-----------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C 76 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENGRIA-----------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKC 76 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhCcch-----------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhh
Confidence 4567789999999999999999988864433 378999999999999999999987653 2211
Q ss_pred -ec--------hhhHHh--hhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH
Q 010809 296 -SG--------SEFVEM--FVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (500)
Q Consensus 296 -s~--------se~~~~--~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e 360 (500)
+| .|+++. -...+.+.+|++.+++.. ..+.|.+|||+|.+ ..+..|.||+.
T Consensus 77 ~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------------S~~afNALLKT 142 (515)
T COG2812 77 ISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------------SKQAFNALLKT 142 (515)
T ss_pred hhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh--------------hHHHHHHHhcc
Confidence 11 122221 112355678888888743 33569999999998 35688999999
Q ss_pred hcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc-cHHHHHHhCCCCcHHH
Q 010809 361 MDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLDVIAMRTPGFSGAD 439 (500)
Q Consensus 361 md~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~~la~~t~G~sgad 439 (500)
++ +++..|++|.+|..+..++..+++ |+. ++.+..-+.++....|+..+.+..+..+. -+..+++...| +.+|
T Consensus 143 LE--EPP~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 143 LE--EPPSHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred cc--cCccCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 98 567789999999999999999999 885 78899999999888888888877766444 37889999998 9999
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 010809 440 LANLLNEAAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 440 L~~lv~eAa~~A~r~~~~~It~~d~~~ 466 (500)
...+++.|..... ..||.+++.+
T Consensus 217 alslLDq~i~~~~----~~It~~~v~~ 239 (515)
T COG2812 217 ALSLLDQAIAFGE----GEITLESVRD 239 (515)
T ss_pred HHHHHHHHHHccC----CcccHHHHHH
Confidence 9999999886652 4466555443
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=7.1e-14 Score=154.63 Aligned_cols=211 Identities=19% Similarity=0.254 Sum_probs=144.6
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE---Ee--
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS---IS-- 296 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~---is-- 296 (500)
.+++.+.+|+||+|++.+++.|...+..- +.+..+||+||+|+|||++|+++|+.+.+.... ..
T Consensus 7 ~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~ 75 (585)
T PRK14950 7 YRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCG 75 (585)
T ss_pred HHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 35677889999999999999988877632 234578999999999999999999987542210 00
Q ss_pred -ch---hhHHh----h------hhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 297 -GS---EFVEM----F------VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 297 -~s---e~~~~----~------vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
|+ .+... + ...+.+.+|++.+.+.. ....||||||+|.+. ...++.|+
T Consensus 76 ~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------------~~a~naLL 141 (585)
T PRK14950 76 TCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS--------------TAAFNALL 141 (585)
T ss_pred cCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------------HHHHHHHH
Confidence 11 11000 0 01123445665554432 234699999999982 24567788
Q ss_pred HHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcH
Q 010809 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSG 437 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sg 437 (500)
..++.. ...+++|.+++..+.+.+.+++ |+. .+.++.++..+...+++..+...++. ++..+..++..+.| +.
T Consensus 142 k~LEep--p~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dl 215 (585)
T PRK14950 142 KTLEEP--PPHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SM 215 (585)
T ss_pred HHHhcC--CCCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 877753 3456777777777778888887 775 68999999999888888777655433 22346788888887 88
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 438 ADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
+++.+.++..+.+ +...|+.+++++.
T Consensus 216 r~al~~LekL~~y----~~~~It~e~V~~l 241 (585)
T PRK14950 216 RDAENLLQQLATT----YGGEISLSQVQSL 241 (585)
T ss_pred HHHHHHHHHHHHh----cCCCCCHHHHHHH
Confidence 8888888865543 3346888887654
No 127
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.3e-15 Score=158.58 Aligned_cols=164 Identities=26% Similarity=0.440 Sum_probs=126.0
Q ss_pred cccccCChHHHHHHHHHHHH--hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-----
Q 010809 230 FDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE----- 302 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~--l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~----- 302 (500)
=+|-.|++++|+.+.|++.- |+.. -..+-++|+||||+|||.++|.||+.++..|++++...+.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs--------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGS--------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhccc--------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhc
Confidence 36889999999999997765 3322 23446899999999999999999999999999998764432
Q ss_pred ----hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC---------C----C
Q 010809 303 ----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG---------F----E 365 (500)
Q Consensus 303 ----~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~---------~----~ 365 (500)
.|+|..+.++-+.++...-..| +++|||||.+|+.-. |+. ..+ ||..+|- + -
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q-----GDP--asA---LLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ-----GDP--ASA---LLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC-----CCh--HHH---HHHhcChhhccchhhhcccccc
Confidence 4888888888888888766665 778899999973211 111 122 3333321 1 1
Q ss_pred CCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 366 GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 366 ~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
.-+.|++|||.|..+.++++|+. |+. .|+++-+..++..+|.+.|+-
T Consensus 551 DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred chhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhh
Confidence 12369999999999999999999 995 899999999999999998874
No 128
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.3e-13 Score=143.91 Aligned_cols=217 Identities=21% Similarity=0.333 Sum_probs=155.9
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----EEEEechhhHHhh
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSISGSEFVEMF 304 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-----fi~is~se~~~~~ 304 (500)
-+.+.+.++..+++..++...-+ ...|.+++++||||||||.+++.+++++.-+ +++|+|....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34499999999988887655322 2346679999999999999999999987433 8999997665432
Q ss_pred h---------------hhhh-hHHHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 305 V---------------GVGA-SRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 305 v---------------G~~~-~~vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
. |... +..+.+++... ....-||++||+|.+..+.+ ..|.+|+...+.. .
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----------hHHHHHHhhcccc--c
Confidence 1 1111 12223333332 24567999999999965431 6788888876654 5
Q ss_pred CCeEEEEeeCCC---CCCchhhcCCCCcce-EEEecCCCHHHHHHHHHHHhcCCC----CCccccHHH---HHHhCCCCc
Q 010809 368 TGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDV---IAMRTPGFS 436 (500)
Q Consensus 368 ~~viVIaaTN~~---~~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~---la~~t~G~s 436 (500)
.++.+|+.+|.. +.+|+.+.+ ++.. .|.|++++.++..+|++..++..- +++++ ++. ++....| +
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~v-l~lia~~~a~~~G-D 230 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDV-LKLIAALVAAESG-D 230 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccH-HHHHHHHHHHcCc-c
Confidence 678999999875 478888887 5443 689999999999999998876432 22222 333 3444555 6
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
.+-.-.+|+.|+..|.+++...++.+++.+|.+.+
T Consensus 231 AR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~ 265 (366)
T COG1474 231 ARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEI 265 (366)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHh
Confidence 66667899999999999999999999999996544
No 129
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.57 E-value=4.1e-14 Score=160.55 Aligned_cols=218 Identities=19% Similarity=0.264 Sum_probs=142.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH--------
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-------- 302 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-------- 302 (500)
+|..|++++|+.+.+++...+... ......++|+||||+|||++++.+|+.++.+|+.++.+...+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 469999999999988777543221 111236999999999999999999999999999998765422
Q ss_pred -hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC-----CC--------CCC
Q 010809 303 -MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (500)
Q Consensus 303 -~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~-----~~--------~~~ 368 (500)
.|.|....++.+.+..+.... +||+|||+|.+...... .....|+..+|. |. .-+
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g----------~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG----------DPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC----------CHHHHHHHHhccccEEEEecccccccccCC
Confidence 355555556666666554333 48999999999643211 123344444442 11 125
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC-----CCCC---cccc---HHHHHHh-CCCCc
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN-----KKFD---ADVS---LDVIAMR-TPGFS 436 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~-----~~l~---~dvd---l~~la~~-t~G~s 436 (500)
++++|||+|.. .++++|++ ||. .+.+..++.++..+|.+.++.. ..+. -.++ +..++.. +..+-
T Consensus 465 ~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~G 540 (784)
T PRK10787 465 DVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAG 540 (784)
T ss_pred ceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccC
Confidence 79999999987 49999999 995 8999999999999999988842 1111 1111 3344432 33334
Q ss_pred HHHHHHHHHHHHHHHH----HcCC---CCcCHHHHHHHHH
Q 010809 437 GADLANLLNEAAILAG----RRGK---AAISSKEIDDSID 469 (500)
Q Consensus 437 gadL~~lv~eAa~~A~----r~~~---~~It~~d~~~Ai~ 469 (500)
.+.|+..++..+..+. ..+. -.|+.+++++.+-
T Consensus 541 aR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 541 VRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLG 580 (784)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhC
Confidence 5666655554443332 2222 3577777665544
No 130
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.56 E-value=3.7e-14 Score=146.27 Aligned_cols=222 Identities=23% Similarity=0.390 Sum_probs=135.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEE--e
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI--S 296 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~i--s 296 (500)
.++.|++|+|++++++.+.-.+-. +. ..++||.|+||||||++|+++|+-+ +.|+-.. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~---~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~ 70 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAID---PG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPE 70 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhc---cC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCccc
Confidence 467899999999999877653211 11 1379999999999999999999976 3322111 1
Q ss_pred ch-hh---------------HHhhhhhhhhHH------HH-------HHHHH--HhCCCeEEEEcCcchhhhccCCCCCC
Q 010809 297 GS-EF---------------VEMFVGVGASRV------RD-------LFKKA--KENAPCIVFVDEIDAVGRQRGTGIGG 345 (500)
Q Consensus 297 ~s-e~---------------~~~~vG~~~~~v------r~-------lf~~a--~~~~p~IIfIDEID~l~~~r~~~~~~ 345 (500)
+. +. ++...+.+..++ .. .|..- ......+|||||++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------- 140 (334)
T PRK13407 71 DCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------- 140 (334)
T ss_pred CCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC----------
Confidence 10 00 001011111100 00 01100 0111249999999998
Q ss_pred CChHHHHHHHHHHHHh------cCC--CCCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCCCH-HHHHHHHHHHhc
Q 010809 346 GNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGS 415 (500)
Q Consensus 346 ~~~e~~~~L~~LL~em------d~~--~~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~Pd~-~eR~~IL~~~l~ 415 (500)
+...+..|.+.+.+- +|. ..+..+++++++|..+ .++++++. ||...+.++.|.. ++|.++++....
T Consensus 141 -~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 141 -EDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred -CHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 333444444444321 111 1235689999999755 68999999 9999999998876 889999987432
Q ss_pred CCC----C------C--------------------cccc---HHHHHHh--CCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 010809 416 NKK----F------D--------------------ADVS---LDVIAMR--TPGFSGADLANLLNEAAILAGRRGKAAIS 460 (500)
Q Consensus 416 ~~~----l------~--------------------~dvd---l~~la~~--t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (500)
... . . ++.. +..++.. .+| .-+++. +++.|...|..+|++.|+
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s-~Ra~i~-l~~aA~a~A~l~Gr~~V~ 295 (334)
T PRK13407 218 YDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDG-LRGELT-LLRAARALAAFEGAEAVG 295 (334)
T ss_pred ccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCC-chHHHH-HHHHHHHHHHHcCCCeeC
Confidence 110 0 0 0000 1122222 334 345555 999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q 010809 461 SKEIDDSIDRIVAG 474 (500)
Q Consensus 461 ~~d~~~Ai~~v~~g 474 (500)
.+|++++..-++..
T Consensus 296 ~~Di~~~~~~vl~h 309 (334)
T PRK13407 296 RSHLRSVATMALSH 309 (334)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999888766543
No 131
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.55 E-value=1.2e-13 Score=144.62 Aligned_cols=176 Identities=29% Similarity=0.447 Sum_probs=125.6
Q ss_pred cccCChHHHHHHHHHHHH-hcChhhhhhh-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhh-h
Q 010809 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~~-G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG-~ 307 (500)
-|+|++++|+.+..++.. ++.......+ .--.|+++||+||||||||++|+++|+.++.||+.++++++.+ .|+| .
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 489999999999877653 2222111111 1235689999999999999999999999999999999988875 5666 3
Q ss_pred hhhHHHHHHHHH--------------------------------------------------------------------
Q 010809 308 GASRVRDLFKKA-------------------------------------------------------------------- 319 (500)
Q Consensus 308 ~~~~vr~lf~~a-------------------------------------------------------------------- 319 (500)
.++.++.+|+.+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 444555554443
Q ss_pred -----------------------------------------------------------------------HhCCCeEEE
Q 010809 320 -----------------------------------------------------------------------KENAPCIVF 328 (500)
Q Consensus 320 -----------------------------------------------------------------------~~~~p~IIf 328 (500)
+.....|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 001346999
Q ss_pred EcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEeeC----CCCCCchhhcCCCCcceEE
Q 010809 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQV 396 (500)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVIaaTN----~~~~Ld~aLlrpgRfdr~I 396 (500)
|||||.++.+... .+.+-..+.+...||..++|-. ...++++||+.- .|+.|-|.|.- ||...+
T Consensus 253 iDEiDKIa~~~~~--~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v 328 (441)
T TIGR00390 253 IDEIDKIAKKGES--SGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRV 328 (441)
T ss_pred EEchhhhcccCCC--CCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEE
Confidence 9999999876522 2223344556777888877632 235688888763 36667777765 999999
Q ss_pred EecCCCHHHHHHHHH
Q 010809 397 TVDVPDIRGRTEILK 411 (500)
Q Consensus 397 ~v~~Pd~~eR~~IL~ 411 (500)
.+..++.++..+||.
T Consensus 329 ~L~~L~~edL~rILt 343 (441)
T TIGR00390 329 ELQALTTDDFERILT 343 (441)
T ss_pred ECCCCCHHHHHHHhc
Confidence 999999999888873
No 132
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.55 E-value=1.3e-14 Score=154.19 Aligned_cols=215 Identities=26% Similarity=0.407 Sum_probs=149.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEechhhH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFV 301 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~se~~ 301 (500)
....+|+||+|.+++..++.+.+..... .+-.|||.|++||||.++|+++-+ ..+.||+.+||..+.
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr~A~----------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKRIAK----------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHhhcC----------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457999999999999999888876533 334799999999999999999955 458899999998776
Q ss_pred Hhh-------------hhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC
Q 010809 302 EMF-------------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG 366 (500)
Q Consensus 302 ~~~-------------vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~ 366 (500)
+.. .|....--..+|+.|... .||+|||..+ +...+.-|...|++-+ ...+
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gG---TLFLDEIgem-----------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGG---TLFLDEIGEM-----------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCC---eEEehhhccC-----------CHHHHHHHHHHHhhceEEecCC
Confidence 532 222222245677777554 7999999877 5556666666666522 1222
Q ss_pred ----CCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHHHHH----HHh----cC----C-CCCcc
Q 010809 367 ----NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEILK----VHG----SN----K-KFDAD 422 (500)
Q Consensus 367 ----~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~----~~l----~~----~-~l~~d 422 (500)
+.+|.||||||+.- .+-..|.- |++ ++.+..|+.++|.+-+. ..+ ++ . .++++
T Consensus 375 t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYY--RLN-V~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~ 451 (560)
T COG3829 375 TKPIPVDVRIIAATNRNLEKMIAEGTFREDLYY--RLN-VIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPD 451 (560)
T ss_pred CCceeeEEEEEeccCcCHHHHHhcCcchhhhee--eec-eeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHH
Confidence 23699999999731 23333333 443 88899999999887332 111 11 1 25556
Q ss_pred ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH-HHHH
Q 010809 423 VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID-DSID 469 (500)
Q Consensus 423 vdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~-~Ai~ 469 (500)
.-...+...||| +.++|+|++..|..++ .....|+.+|+. .++.
T Consensus 452 a~~~L~~y~WPG-NVRELeNviER~v~~~--~~~~~I~~~~lp~~~l~ 496 (560)
T COG3829 452 ALALLLRYDWPG-NVRELENVIERAVNLV--ESDGLIDADDLPAFALE 496 (560)
T ss_pred HHHHHHhCCCCc-hHHHHHHHHHHHHhcc--CCcceeehhhcchhhhc
Confidence 656677888999 9999999999999755 333447777776 4444
No 133
>PRK09087 hypothetical protein; Validated
Probab=99.54 E-value=3.3e-13 Score=132.25 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=134.3
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
...+..+|++.+.-+.-...+. +++.+.. . ....++|+||+|+|||||+++++...++. +++..+|..
T Consensus 13 ~~~~~~~~~~Fi~~~~N~~a~~-~l~~~~~--------~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~ 80 (226)
T PRK09087 13 SHDPAYGRDDLLVTESNRAAVS-LVDHWPN--------W-PSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGS 80 (226)
T ss_pred CCCCCCChhceeecCchHHHHH-HHHhccc--------C-CCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcch
Confidence 3455679999985332222222 2222111 0 11248999999999999999999887654 555544443
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC--
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD-- 380 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~-- 380 (500)
.++ ..... .+|+|||+|.+.. . +..+..+++.+. .....+||+++..|.
T Consensus 81 ~~~-----------~~~~~---~~l~iDDi~~~~~---------~---~~~lf~l~n~~~---~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 81 DAA-----------NAAAE---GPVLIEDIDAGGF---------D---ETGLFHLINSVR---QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred HHH-----------Hhhhc---CeEEEECCCCCCC---------C---HHHHHHHHHHHH---hCCCeEEEECCCChHHh
Confidence 322 11211 3788999998621 1 223444444432 234456666665544
Q ss_pred -CCchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 381 -ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 381 -~Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
...+.|++ |+. ..++++.|+.++|.++++.+++...+. ++..++.++.+.+| +.+.+..+++.....+...+
T Consensus 132 ~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~- 207 (226)
T PRK09087 132 NVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK- 207 (226)
T ss_pred ccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-
Confidence 23677888 886 489999999999999999998765543 33447889998887 88888888888776666555
Q ss_pred CCcCHHHHHHHHHHH
Q 010809 457 AAISSKEIDDSIDRI 471 (500)
Q Consensus 457 ~~It~~d~~~Ai~~v 471 (500)
+.||...++++++..
T Consensus 208 ~~it~~~~~~~l~~~ 222 (226)
T PRK09087 208 SRITRALAAEVLNEM 222 (226)
T ss_pred CCCCHHHHHHHHHhh
Confidence 459999999998764
No 134
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.54 E-value=1.6e-13 Score=143.96 Aligned_cols=176 Identities=30% Similarity=0.441 Sum_probs=127.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhhhhhhC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhh-h
Q 010809 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVG-V 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~~G-~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG-~ 307 (500)
.|+|++++|+.+..++.. ++.......+. -..|+++||+||||||||++|+++|..++.||+.+++++|.+ .|+| .
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 489999999999887743 22211111111 113689999999999999999999999999999999999987 5777 3
Q ss_pred hhhHHHHHHHHHH-------------------------------------------------------------------
Q 010809 308 GASRVRDLFKKAK------------------------------------------------------------------- 320 (500)
Q Consensus 308 ~~~~vr~lf~~a~------------------------------------------------------------------- 320 (500)
.+..++++|+.|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 3455566655550
Q ss_pred -----------------------------------------------------------------------hCCCeEEEE
Q 010809 321 -----------------------------------------------------------------------ENAPCIVFV 329 (500)
Q Consensus 321 -----------------------------------------------------------------------~~~p~IIfI 329 (500)
.....||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 012359999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEeeC----CCCCCchhhcCCCCcceEEE
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAATN----RADILDSALLRPGRFDRQVT 397 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVIaaTN----~~~~Ld~aLlrpgRfdr~I~ 397 (500)
||||.|+.+.+. ++.+-..+.+...||..++|-. ...++++||+.- .|+.|-|.|.- ||..++.
T Consensus 256 DEiDKIa~~~~~--~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~ 331 (443)
T PRK05201 256 DEIDKIAARGGS--SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVE 331 (443)
T ss_pred EcchhhcccCCC--CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEE
Confidence 999999877543 2333344556777888887632 245688888763 46667788876 9999999
Q ss_pred ecCCCHHHHHHHHH
Q 010809 398 VDVPDIRGRTEILK 411 (500)
Q Consensus 398 v~~Pd~~eR~~IL~ 411 (500)
+..++.++..+||.
T Consensus 332 L~~L~~~dL~~ILt 345 (443)
T PRK05201 332 LDALTEEDFVRILT 345 (443)
T ss_pred CCCCCHHHHHHHhc
Confidence 99999999888874
No 135
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=2.5e-13 Score=150.63 Aligned_cols=206 Identities=18% Similarity=0.318 Sum_probs=146.0
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------- 291 (500)
.+++.+.+|+||+|++.+++.|...+.. .+.|+.+|||||+|+|||++|+++|..+.+.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4566788999999999999988887763 2346679999999999999999999987532
Q ss_pred ---------------EEEEechhhHHhhhhhhhhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHH
Q 010809 292 ---------------FFSISGSEFVEMFVGVGASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQ 352 (500)
Q Consensus 292 ---------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~ 352 (500)
++.+++++ ..+...++++.+++... ...|++|||+|.+. ..
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------------~~ 136 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------------QA 136 (614)
T ss_pred cchHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------------HH
Confidence 22222211 01234567777666332 24599999999982 23
Q ss_pred HHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHHh
Q 010809 353 TLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMR 431 (500)
Q Consensus 353 ~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~la~~ 431 (500)
..+.|+..|+. +....++|.+|+....+-+.+++ |+. .+.+..++.++....++..+...++.-+ ..+..++..
T Consensus 137 a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 137 AFNAFLKTLEE--PPSYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred HHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56778887774 34466777777777888899998 885 7999999999988888877766555432 347888888
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 432 TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 432 t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
+.| +.+++.+.++....++ +.. |+.+++.+.+
T Consensus 212 s~g-dlr~al~~Lekl~~y~---~~~-It~~~V~~~l 243 (614)
T PRK14971 212 ADG-GMRDALSIFDQVVSFT---GGN-ITYKSVIENL 243 (614)
T ss_pred cCC-CHHHHHHHHHHHHHhc---cCC-ccHHHHHHHh
Confidence 876 7777777776665544 322 7766655443
No 136
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.53 E-value=1.3e-13 Score=142.62 Aligned_cols=226 Identities=20% Similarity=0.268 Sum_probs=142.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEec
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISG 297 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~ 297 (500)
.+.+.|++|+|++++|..|...+. +|. ..|+||.|++|||||++|++++..+ +.||. ...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~---~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p 77 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVI---DPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHP 77 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhcc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCC
Confidence 446789999999999987765432 332 2489999999999999999997754 23443 100
Q ss_pred -------hhhHH-------------------hhhhhhhhH------HHHHHHHHH---------hCCCeEEEEcCcchhh
Q 010809 298 -------SEFVE-------------------MFVGVGASR------VRDLFKKAK---------ENAPCIVFVDEIDAVG 336 (500)
Q Consensus 298 -------se~~~-------------------~~vG~~~~~------vr~lf~~a~---------~~~p~IIfIDEID~l~ 336 (500)
++... ...+...++ +...|.... +....+|||||++.+
T Consensus 78 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL- 156 (350)
T CHL00081 78 SDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL- 156 (350)
T ss_pred CChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC-
Confidence 00000 001112221 111121111 112359999999998
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCCC-HHHH
Q 010809 337 RQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IRGR 406 (500)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~em------d~~--~~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~Pd-~~eR 406 (500)
+...+..|.+.+.+- +|. ..+.++++|++.|..+ .+.++++. ||..++.+..|+ .+.+
T Consensus 157 ----------~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 ----------DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELR 224 (350)
T ss_pred ----------CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHH
Confidence 334444444444321 111 1234688999888765 69999999 999999999997 5889
Q ss_pred HHHHHHHhcCC--C-----------------------------CCcccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 010809 407 TEILKVHGSNK--K-----------------------------FDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGR 453 (500)
Q Consensus 407 ~~IL~~~l~~~--~-----------------------------l~~dvd--l~~la~~t~G~sgadL~~lv~eAa~~A~r 453 (500)
.+|++...... + +++++- +..++..+.--+.+--..+++.|..+|+.
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal 304 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAF 304 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHH
Confidence 99998753211 0 100000 12223333322455566888889999999
Q ss_pred cCCCCcCHHHHHHHHHHHHcCcC
Q 010809 454 RGKAAISSKEIDDSIDRIVAGME 476 (500)
Q Consensus 454 ~~~~~It~~d~~~Ai~~v~~g~~ 476 (500)
+|+..|+.+|++.+..-++....
T Consensus 305 ~GR~~V~pdDv~~~a~~vL~HR~ 327 (350)
T CHL00081 305 EGRTEVTPKDIFKVITLCLRHRL 327 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999998876544
No 137
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.53 E-value=3.3e-13 Score=142.59 Aligned_cols=220 Identities=23% Similarity=0.282 Sum_probs=131.4
Q ss_pred cccCChHHHHHHHHHHHH----hcCh-hhhhhhCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hh
Q 010809 232 DVAGVDEAKQDFMEVVEF----LKKP-ERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MF 304 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~----l~~p-~~~~~~G~~-~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~ 304 (500)
-|+|++++++.+...+.. +... ..-...+.. .+.++||+||||||||++|+++|..+++||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 469999999999877632 2110 000000111 1358999999999999999999999999999999887753 46
Q ss_pred hhhh-hhHHHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-----------CCC
Q 010809 305 VGVG-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-----------GNT 368 (500)
Q Consensus 305 vG~~-~~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~-----------~~~ 368 (500)
+|.. ...+..++..+ ....++||||||||.+.+++.....+.+-..+.+.+.||..|+|.. +..
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 6653 23333443322 2345789999999999875432111111111234444555554432 123
Q ss_pred CeEEEEeeCCC---------------------------C-----------------------CCchhhcCCCCcceEEEe
Q 010809 369 GIIVIAATNRA---------------------------D-----------------------ILDSALLRPGRFDRQVTV 398 (500)
Q Consensus 369 ~viVIaaTN~~---------------------------~-----------------------~Ld~aLlrpgRfdr~I~v 398 (500)
+.++|.|+|-. + .+.|+++. |+|..+.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f 315 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATL 315 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeec
Confidence 46778887751 0 02344544 89988999
Q ss_pred cCCCHHHHHHHHHHH----hc-------CCCCCc---cccHHHHHHh--CCCCcHHHHHHHHHHHHHHHHH
Q 010809 399 DVPDIRGRTEILKVH----GS-------NKKFDA---DVSLDVIAMR--TPGFSGADLANLLNEAAILAGR 453 (500)
Q Consensus 399 ~~Pd~~eR~~IL~~~----l~-------~~~l~~---dvdl~~la~~--t~G~sgadL~~lv~eAa~~A~r 453 (500)
.+.+.++..+|+... ++ ..+..- +.-++.+++. .+.+-.+-|+.+++....-+..
T Consensus 316 ~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~ 386 (413)
T TIGR00382 316 EKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMF 386 (413)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHh
Confidence 999999999988752 11 112111 1124555554 3344466677777766554433
No 138
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.52 E-value=9.5e-13 Score=146.27 Aligned_cols=218 Identities=22% Similarity=0.339 Sum_probs=137.6
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~ 294 (500)
..+.+|++++|++++.+.+...+. .+ .|.+++|+||||||||++|+++++.. +.+|+.
T Consensus 148 ~rp~~~~~iiGqs~~~~~l~~~ia---~~---------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 148 LRPRAFSEIVGQERAIKALLAKVA---SP---------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred cCcCcHHhceeCcHHHHHHHHHHh---cC---------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 346789999999999987654442 11 24479999999999999999997654 468999
Q ss_pred EechhhH-------Hhhhhhhhh----HHHHHHHH----------HHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 295 ISGSEFV-------EMFVGVGAS----RVRDLFKK----------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 295 is~se~~-------~~~vG~~~~----~vr~lf~~----------a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
++|..+. ..+.+.... ..+..+.. .......+|||||++.+ +...+..
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L-----------d~~~Q~~ 284 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL-----------DPLLQNK 284 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC-----------CHHHHHH
Confidence 9987652 111121110 01111110 01123459999999988 4444555
Q ss_pred HHHHHHHhc------CC-----------------CCCCCeEEEEee-CCCCCCchhhcCCCCcceEEEecCCCHHHHHHH
Q 010809 354 LNQLLTEMD------GF-----------------EGNTGIIVIAAT-NRADILDSALLRPGRFDRQVTVDVPDIRGRTEI 409 (500)
Q Consensus 354 L~~LL~emd------~~-----------------~~~~~viVIaaT-N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I 409 (500)
+..++..-. .+ ..+..+++|++| +.++.++++|++ ||. .+.+++++.++..+|
T Consensus 285 Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~I 361 (615)
T TIGR02903 285 LLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALI 361 (615)
T ss_pred HHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHH
Confidence 555554311 00 012246666654 568889999988 996 678999999999999
Q ss_pred HHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc--------CCCCcCHHHHHHHHHH
Q 010809 410 LKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR--------GKAAISSKEIDDSIDR 470 (500)
Q Consensus 410 L~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~--------~~~~It~~d~~~Ai~~ 470 (500)
++..+...... .+.-++.++..+. .++...+++..+...+..+ +...|+.+|+++++..
T Consensus 362 l~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 362 VLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 99988765432 1223455555442 4566666666665443221 2346899999988875
No 139
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.51 E-value=4.3e-13 Score=151.39 Aligned_cols=167 Identities=18% Similarity=0.267 Sum_probs=115.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCC-ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-----hhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----MFV 305 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p-~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-----~~v 305 (500)
.|+|++++++.+.+.+...+..-. ....| .++||+||||||||.+|+++|..++.+|+.++++++.+ .++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~----~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLG----HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhcccc----CCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 489999999999998876432100 01123 36899999999999999999999999999999998854 334
Q ss_pred hhhhhH-----HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC------CCCCeEEEE
Q 010809 306 GVGASR-----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNTGIIVIA 374 (500)
Q Consensus 306 G~~~~~-----vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~------~~~~viVIa 374 (500)
|..... -..+.+..+....|||||||||.+ +.+..+.+.+++.+-.-.. .-.++++|+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka-----------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhh-----------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 422111 122334445566699999999998 3344444444444211000 113688999
Q ss_pred eeCCC-------------------------CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 375 ATNRA-------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 375 aTN~~-------------------------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
|||.. ..+.|+++. |+|.++.|++.+.++..+|+...+.
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 99932 125577777 9999999999999999999886654
No 140
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.49 E-value=1.4e-12 Score=132.31 Aligned_cols=129 Identities=23% Similarity=0.333 Sum_probs=95.6
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC------------CCCCchhhcCCCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~------------~~~Ld~aLlrpgR 391 (500)
|.||||||+|.| +-|.-..||.-+.. .---++|.|||+ |.-++..|+. |
T Consensus 292 pGVLFIDEvHmL-----------DIE~FsFlnrAlEs------e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--R 352 (450)
T COG1224 292 PGVLFIDEVHML-----------DIECFSFLNRALES------ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLD--R 352 (450)
T ss_pred cceEEEechhhh-----------hHHHHHHHHHHhhc------ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhh--h
Confidence 789999999888 34444444444431 122378888885 5567777777 6
Q ss_pred cceEEEecCCCHHHHHHHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 392 fdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~-dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
. ..|...+++.++.++|++..++...+.- +..++.++....--|-+-.-+++.-|...|.++++..|..+|+++|.+-
T Consensus 353 l-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 353 L-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred e-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 6 3778888999999999999987665442 2336777776665677777789999999999999999999999999875
Q ss_pred HH
Q 010809 471 IV 472 (500)
Q Consensus 471 v~ 472 (500)
..
T Consensus 432 F~ 433 (450)
T COG1224 432 FL 433 (450)
T ss_pred Hh
Confidence 43
No 141
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=1.6e-12 Score=127.35 Aligned_cols=193 Identities=22% Similarity=0.369 Sum_probs=132.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
...++.+++++|++++|+.|.+....+-. ..+..++||+|++|||||+++|++..+. |..++.+...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 44578999999999999999887755322 2346689999999999999999998865 778888877665
Q ss_pred HHhhhhhhhhHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEeeC
Q 010809 301 VEMFVGVGASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAATN 377 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~--~~~~~viVIaaTN 377 (500)
.. +.++++..+. ..+-|||+||+-- ...+.. ...|-..+||- ..+.+|++.||+|
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLsF----------e~~d~~---yk~LKs~LeGgle~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLSF----------EEGDTE---YKALKSVLEGGLEARPDNVLIYATSN 149 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCCC----------CCCcHH---HHHHHHHhcCccccCCCcEEEEEecc
Confidence 43 4456666553 3457999999631 112223 34444445542 2356899999999
Q ss_pred CCCCCchh---------------------hcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccH----HHHHHh
Q 010809 378 RADILDSA---------------------LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSL----DVIAMR 431 (500)
Q Consensus 378 ~~~~Ld~a---------------------LlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl----~~la~~ 431 (500)
+-..+.+. +--..||...+.|..||.++-.+|++.++...++.-+ ..+ ...|..
T Consensus 150 RRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~ 229 (249)
T PF05673_consen 150 RRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALR 229 (249)
T ss_pred hhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 74332221 1112399999999999999999999999976665533 122 233444
Q ss_pred CCCCcHHHHHHHHHH
Q 010809 432 TPGFSGADLANLLNE 446 (500)
Q Consensus 432 t~G~sgadL~~lv~e 446 (500)
-.|.||+-..+.++.
T Consensus 230 rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 230 RGGRSGRTARQFIDD 244 (249)
T ss_pred cCCCCHHHHHHHHHH
Confidence 556777776666654
No 142
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.49 E-value=6.5e-13 Score=137.27 Aligned_cols=219 Identities=22% Similarity=0.309 Sum_probs=138.1
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEE--------
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFF-------- 293 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi-------- 293 (500)
.|..|+|++++|..|.-.+- +|. ..+++|.|+||+|||++++++++-. +.|+-
T Consensus 2 pf~~ivgq~~~~~al~~~~~---~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---DPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhc---CCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58999999999987643322 221 2379999999999999999999865 33332
Q ss_pred -EEechh----------------hHHhhhhhhhhHH------H------------HHHHHHHhCCCeEEEEcCcchhhhc
Q 010809 294 -SISGSE----------------FVEMFVGVGASRV------R------------DLFKKAKENAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 294 -~is~se----------------~~~~~vG~~~~~v------r------------~lf~~a~~~~p~IIfIDEID~l~~~ 338 (500)
..+|.. |.+...+..+.++ . .++.++ ...+|||||++.+
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A---~~GvL~lDEi~~L--- 143 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA---NRGILYIDEVNLL--- 143 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec---cCCEEEecChHhC---
Confidence 001111 1111111111111 1 112212 2359999999998
Q ss_pred cCCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCCCH-HHHHH
Q 010809 339 RGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPDI-RGRTE 408 (500)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~em------d~~--~~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~Pd~-~eR~~ 408 (500)
....+..|.+.+.+- +|. ..+.++++|++.|..+ .+.++|+. ||..++.++.|+. ++|.+
T Consensus 144 --------~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 144 --------EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred --------CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHH
Confidence 333444444444321 111 1134688999988755 68999999 9999999999975 88889
Q ss_pred HHHHHhcCC-------------------------------CCCccc--cHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 409 ILKVHGSNK-------------------------------KFDADV--SLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 409 IL~~~l~~~-------------------------------~l~~dv--dl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
|++...... .+++++ .+..++..+..-+.+--..+++.|..+|+.+|
T Consensus 214 IL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~G 293 (337)
T TIGR02030 214 IVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEG 293 (337)
T ss_pred HHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcC
Confidence 988743210 011110 02223333332245666789999999999999
Q ss_pred CCCcCHHHHHHHHHHHHcCc
Q 010809 456 KAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 456 ~~~It~~d~~~Ai~~v~~g~ 475 (500)
+..|+.+|++.+..-++...
T Consensus 294 R~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 294 RTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999876553
No 143
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.47 E-value=1.4e-12 Score=147.87 Aligned_cols=168 Identities=21% Similarity=0.327 Sum_probs=116.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCc-eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh-----h
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-----F 304 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~-gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~-----~ 304 (500)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||||||||++|+++|..++.+++.++++++.+. +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~----~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~l 529 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLG----NPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRL 529 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCC----CCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHH
Confidence 4688999999988887765321100 011244 47999999999999999999999999999999998652 2
Q ss_pred hhhh-----hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh---cCC---CCCCCeEEE
Q 010809 305 VGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DGF---EGNTGIIVI 373 (500)
Q Consensus 305 vG~~-----~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em---d~~---~~~~~viVI 373 (500)
+|.. ......+.+..+....+||+|||+|.+ +.+....|.+++.+- |.. ..-.+.++|
T Consensus 530 ig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka-----------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii 598 (731)
T TIGR02639 530 IGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA-----------HPDIYNILLQVMDYATLTDNNGRKADFRNVILI 598 (731)
T ss_pred hcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhc-----------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEE
Confidence 3321 122234455556667799999999988 344444444444421 000 012357899
Q ss_pred EeeCCCC-------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 374 AATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 374 aaTN~~~-------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
+|||... .+.|.++. |+|.++.|.+.+.++..+|++..++
T Consensus 599 ~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 599 MTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred ECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 9998631 24566766 9999999999999999999987765
No 144
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.46 E-value=8.8e-13 Score=134.85 Aligned_cols=138 Identities=18% Similarity=0.241 Sum_probs=102.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh--hhhhhhhH----------HHHHHHHHHhCCCeEEEEcCc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGVGASR----------VRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~--~vG~~~~~----------vr~lf~~a~~~~p~IIfIDEI 332 (500)
++++|.||||||||++|+.+|.+++.|++.++++..... ++|...-. ....+..|.. .++++++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 379999999999999999999999999999999866554 34432110 1123334433 4588999999
Q ss_pred chhhhccCCCCCCCChHHHHHHHHHHHH-----h----cCCCCCCCeEEEEeeCCCC------------CCchhhcCCCC
Q 010809 333 DAVGRQRGTGIGGGNDEREQTLNQLLTE-----M----DGFEGNTGIIVIAATNRAD------------ILDSALLRPGR 391 (500)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~e-----m----d~~~~~~~viVIaaTN~~~------------~Ld~aLlrpgR 391 (500)
|.. ..+....|+.+|.. + +.+..++.+.||||.|..+ .++++++. |
T Consensus 144 n~a-----------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--R 210 (327)
T TIGR01650 144 DAG-----------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--R 210 (327)
T ss_pred hcc-----------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--h
Confidence 987 44455667777763 1 1123456799999999854 46889999 9
Q ss_pred cceEEEecCCCHHHHHHHHHHHhcC
Q 010809 392 FDRQVTVDVPDIRGRTEILKVHGSN 416 (500)
Q Consensus 392 fdr~I~v~~Pd~~eR~~IL~~~l~~ 416 (500)
|-.++.++.|+.++..+|+......
T Consensus 211 F~i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 211 WSIVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eeeEeeCCCCCHHHHHHHHHhhccC
Confidence 9877899999999999999876543
No 145
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.45 E-value=4.1e-13 Score=142.67 Aligned_cols=208 Identities=27% Similarity=0.415 Sum_probs=141.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEechhhHHh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~se~~~~ 303 (500)
...+.+++|.+.+.+++.+.+..+..... .|||+|++||||-++|+++-. ..+.||+.+||..+.+.
T Consensus 137 ~~~~~~liG~S~am~~l~~~i~kvA~s~a----------~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~ 206 (464)
T COG2204 137 KSLGGELVGESPAMQQLRRLIAKVAPSDA----------SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN 206 (464)
T ss_pred ccccCCceecCHHHHHHHHHHHHHhCCCC----------CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence 34688999999999999999988765442 799999999999999999955 45779999999866543
Q ss_pred h-----hh------hhh-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh--cCCCC---
Q 010809 304 F-----VG------VGA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--DGFEG--- 366 (500)
Q Consensus 304 ~-----vG------~~~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em--d~~~~--- 366 (500)
. .| .|+ .+-...|+.|... .||||||..+ ..+.+.-|...|.+- ....+
T Consensus 207 l~ESELFGhekGAFTGA~~~r~G~fE~A~GG---TLfLDEI~~m-----------pl~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 207 LLESELFGHEKGAFTGAITRRIGRFEQANGG---TLFLDEIGEM-----------PLELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHHhhcccccCcCCcccccCcceeEcCCc---eEEeeccccC-----------CHHHHHHHHHHHHcCeeEecCCCcc
Confidence 2 22 111 1223456666444 8999999887 445555555555532 12222
Q ss_pred -CCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHh----cCC-----CCCccccH
Q 010809 367 -NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNK-----KFDADVSL 425 (500)
Q Consensus 367 -~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l----~~~-----~l~~dvdl 425 (500)
+-+|.||++||+.= .+-+.|.. |+. ++.+..|...+|.+ +++.++ ... .++++.-.
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyy--RLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~ 349 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYY--RLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALA 349 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHh--hhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 23689999999731 23344444 553 88999999999988 222222 222 23333334
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
...+..||| |.++|+|++..++..+ ....|+.+++.
T Consensus 350 ~L~~y~WPG-NVREL~N~ver~~il~---~~~~i~~~~l~ 385 (464)
T COG2204 350 ALLAYDWPG-NVRELENVVERAVILS---EGPEIEVEDLP 385 (464)
T ss_pred HHHhCCCCh-HHHHHHHHHHHHHhcC---Cccccchhhcc
Confidence 455667999 9999999999999877 44556666654
No 146
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.44 E-value=2.3e-12 Score=113.50 Aligned_cols=123 Identities=40% Similarity=0.629 Sum_probs=83.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhhhhhH---HHHHHHHHHhCCCeEEEEcCcchhhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASR---VRDLFKKAKENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~~~~~---vr~lf~~a~~~~p~IIfIDEID~l~~ 337 (500)
.++++++||||||||++++.++..+ +.+++++++.++........... ....+.......+++|+|||++.+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~- 97 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS- 97 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhh-
Confidence 3479999999999999999999998 89999999988766543322211 1222333445567899999999871
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCC-CCCCCeEEEEeeCCCC--CCchhhcCCCCcceEEEec
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-EGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~-~~~~~viVIaaTN~~~--~Ld~aLlrpgRfdr~I~v~ 399 (500)
.+....+.+++...... ....++.+|+++|... .+++.+.+ ||+..+.++
T Consensus 98 ----------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 98 ----------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred ----------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 22233334444433211 1135788899998776 67778877 998777665
No 147
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.43 E-value=9.5e-13 Score=143.46 Aligned_cols=214 Identities=23% Similarity=0.313 Sum_probs=138.8
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~ 303 (500)
..+|++++|.+.+.+.+.+.+..+... ..+|||+|++||||+++|+++-.. .+.||+.++|..+.+.
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 367999999999999999888764332 237999999999999999999654 4679999999876442
Q ss_pred h-----hhh------hh--hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CCC--
Q 010809 304 F-----VGV------GA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG-- 366 (500)
Q Consensus 304 ~-----vG~------~~--~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~-- 366 (500)
. .|. ++ ..-..+|+.+.. ..||||||+.+ +...+..|..+|.+-.- ...
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAHR---GTLFLDEIGEM-----------PLPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcCC---ceEEecChHhC-----------CHHHHHHHHHHHhcCcEEecCCCc
Confidence 2 221 01 112345555533 48999999999 45556666666654221 111
Q ss_pred --CCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhcC------CCCCccccHH-
Q 010809 367 --NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN------KKFDADVSLD- 426 (500)
Q Consensus 367 --~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~~------~~l~~dvdl~- 426 (500)
+.++.+|++||..- .+.+.|.. |+. .+.+..|+.++|.+ ++..++.. .+++++.-..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHH--hcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 12468899987632 12223333 443 57888899988876 22333322 2233332111
Q ss_pred ------HHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 427 ------VIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 427 ------~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.....||| |.++|+|+++.++..+.......|+.+++....
T Consensus 421 ~~~~~~L~~y~WPG-NvrEL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 421 AGVADPLQRYPWPG-NVRELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 34567998 999999999999987643234568888876443
No 148
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.43 E-value=7.3e-13 Score=144.41 Aligned_cols=210 Identities=22% Similarity=0.356 Sum_probs=135.0
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh-----------cCCCEEEEe
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE-----------AGVPFFSIS 296 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e-----------~~~pfi~is 296 (500)
.+|++++|.+.+.+++.+.+..+... +.+|||+|++||||+++|+++-.. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 57999999999999999888764332 237999999999999999999665 467999999
Q ss_pred chhhHHhh-----hhh------hh--hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc-
Q 010809 297 GSEFVEMF-----VGV------GA--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD- 362 (500)
Q Consensus 297 ~se~~~~~-----vG~------~~--~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd- 362 (500)
|..+.+.. .|. ++ ..-..+|+.+.. ..||||||+.+ +.+.+..|..++.+-.
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~g---GTLfLdeI~~L-----------p~~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHG---GTLFLDEIGEM-----------PLPLQTRLLRVLEEKEV 351 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCC---CEEEEcChHhC-----------CHHHHHHHHhhhhcCeE
Confidence 98765432 221 11 011235665533 48999999998 4555556666665422
Q ss_pred -CCCC----CCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhcC----C--CCC
Q 010809 363 -GFEG----NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN----K--KFD 420 (500)
Q Consensus 363 -~~~~----~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~~----~--~l~ 420 (500)
.... +.++.+|++||..- .+.+.|.. |+. .+.+..|+.++|.+ +++.++++ . .+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~y--rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFY--RLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHH--Hhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 1111 23568999998631 12223333 332 67888899998876 23333322 2 222
Q ss_pred cccc-------HHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 421 ADVS-------LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 421 ~dvd-------l~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
++.- .......|+| |.++|+|+++.++..+.......++.+++.
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPG-NvREL~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPG-NVRELRNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCc-hHHHHHHHHHHHHHhcCCCCcCccCHHHhh
Confidence 2221 1223445998 999999999999987543333457766654
No 149
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.43 E-value=4.8e-13 Score=146.64 Aligned_cols=209 Identities=24% Similarity=0.353 Sum_probs=133.5
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
+..+|++++|.+...+++.+.+..+... ..+|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARS----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 4468999999999999999888775432 2379999999999999999997764 67999999987644
Q ss_pred hhh-----hhhh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CCC--
Q 010809 303 MFV-----GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG-- 366 (500)
Q Consensus 303 ~~v-----G~~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~-- 366 (500)
... |... ......|+.+ ...+|||||||.+ +.+.+..|.+++..-.. ...
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~~~~~ 326 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEI-----------SPAFQAKLLRVLQEGEFERVGGNR 326 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhC-----------CHHHHHHHHHHHhcCcEEECCCCc
Confidence 321 1100 0001123333 2458999999999 44555555555543110 001
Q ss_pred --CCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhcC--------CCCCccccH
Q 010809 367 --NTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN--------KKFDADVSL 425 (500)
Q Consensus 367 --~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~~--------~~l~~dvdl 425 (500)
+.++.+|++|+..- .+.+.|.. |+. .+.+..|+.++|.+ +++.++.. ..++++.--
T Consensus 327 ~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~ 403 (534)
T TIGR01817 327 TLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIR 403 (534)
T ss_pred eEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--Hhc-CCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 12478899887531 23334444 443 55677787777654 33333321 123333322
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
......|+| |.++|+++++.|+..+ ....|+.+|+.
T Consensus 404 ~L~~~~WPG-NvrEL~~v~~~a~~~~---~~~~I~~~~l~ 439 (534)
T TIGR01817 404 VLMSCKWPG-NVRELENCLERTATLS---RSGTITRSDFS 439 (534)
T ss_pred HHHhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCc
Confidence 334445898 9999999999998765 34578888875
No 150
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.42 E-value=2.7e-12 Score=143.28 Aligned_cols=215 Identities=21% Similarity=0.311 Sum_probs=137.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------------------- 288 (500)
.|.+|+|++.++..+.-... +|. ..+|||.|+||||||++|++++..+
T Consensus 2 pf~~ivGq~~~~~al~~~av---~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---DPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---CCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 58899999999976653332 221 1279999999999999999999876
Q ss_pred ---------------CCCEEEEechhhHHhhhhhhh--hHH--------HHHHHHHHhCCCeEEEEcCcchhhhccCCCC
Q 010809 289 ---------------GVPFFSISGSEFVEMFVGVGA--SRV--------RDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (500)
Q Consensus 289 ---------------~~pfi~is~se~~~~~vG~~~--~~v--------r~lf~~a~~~~p~IIfIDEID~l~~~r~~~~ 343 (500)
..||+.+.++...+..+|.-. ..+ ..++..| ...|||||||+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l-------- 138 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLL-------- 138 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhC--------
Confidence 357777666544333333210 000 1112222 2359999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCCC-HHHHHHHH
Q 010809 344 GGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVPD-IRGRTEIL 410 (500)
Q Consensus 344 ~~~~~e~~~~L~~LL~emd~~-----------~~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~Pd-~~eR~~IL 410 (500)
+... ++.|+..|+.- ..+.++++|+++|..+ .+.++|+. ||+.++.++.|. .+++.+++
T Consensus 139 ---~~~~---q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il 210 (633)
T TIGR02442 139 ---DDHL---VDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEII 210 (633)
T ss_pred ---CHHH---HHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHH
Confidence 3333 44444444311 1124689999999643 68889999 999888888774 56677777
Q ss_pred HHHhcC-------------------------------CCCCccccHHHHHHhC--CCC-cHHHHHHHHHHHHHHHHHcCC
Q 010809 411 KVHGSN-------------------------------KKFDADVSLDVIAMRT--PGF-SGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 411 ~~~l~~-------------------------------~~l~~dvdl~~la~~t--~G~-sgadL~~lv~eAa~~A~r~~~ 456 (500)
+..... ..+++ ..++.++..+ -|. +.+-...+++-|..+|..+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~-~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr 289 (633)
T TIGR02442 211 RRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISD-SLIRFISELCIEFGVDGHRADIVMARAARALAALDGR 289 (633)
T ss_pred HHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCC
Confidence 643220 01111 1122222221 133 345556788888899999999
Q ss_pred CCcCHHHHHHHHHHHHcCc
Q 010809 457 AAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 457 ~~It~~d~~~Ai~~v~~g~ 475 (500)
..|+.+|+++|++-++...
T Consensus 290 ~~V~~~Dv~~A~~lvL~hR 308 (633)
T TIGR02442 290 RRVTAEDVREAAELVLPHR 308 (633)
T ss_pred CcCCHHHHHHHHHHHhhhh
Confidence 9999999999999887553
No 151
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.42 E-value=1.5e-12 Score=134.30 Aligned_cols=194 Identities=23% Similarity=0.336 Sum_probs=127.1
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh--
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-- 303 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~-- 303 (500)
-|++++|.+...+++.+.+..+... +.+|||+|++||||+++|+++-... +.||+.++|..+.+.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 3778999999999999888775432 2379999999999999999996543 579999999876432
Q ss_pred ---hhhhhh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-------
Q 010809 304 ---FVGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------- 366 (500)
Q Consensus 304 ---~vG~~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~------- 366 (500)
+.|... ......++.+. ...|||||+|.+ ..+.+..|..++..-. +..
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~---gGtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~-~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERAD---GGTLFLDELATA-----------PMLVQEKLLRVIEYGE-LERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhccC---CCeEEeCChhhC-----------CHHHHHHHHHHHhcCc-EEeCCCCcee
Confidence 122110 01122344442 358999999999 4455556666654321 111
Q ss_pred CCCeEEEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHh----cCC------CCCccccH
Q 010809 367 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNK------KFDADVSL 425 (500)
Q Consensus 367 ~~~viVIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l----~~~------~l~~dvdl 425 (500)
+.++.+|++|+.. ..+.+.|.. ||. .+.+..|+..+|.+ ++..++ .+. .++++.--
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~ 215 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLD--RLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARE 215 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHH--hcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 1257888888753 245566666 674 46777888888866 233322 221 23333333
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
......|+| |.++|+++++.|+..+
T Consensus 216 ~L~~y~WPG-NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 216 TLLNYRWPG-NIRELKNVVERSVYRH 240 (326)
T ss_pred HHHhCCCCc-HHHHHHHHHHHHHHhc
Confidence 345567998 9999999999998754
No 152
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.41 E-value=1.8e-12 Score=133.84 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=123.3
Q ss_pred ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhh-----
Q 010809 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF----- 304 (500)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~----- 304 (500)
++|.+.+.+++.+.+..+... ..+|||+|++||||+++|+++-.. .+.||+.++|..+.+..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 468888888888877765432 237999999999999999999653 46799999998654321
Q ss_pred hhhh------h-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CC----CCCCCeE
Q 010809 305 VGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GF----EGNTGII 371 (500)
Q Consensus 305 vG~~------~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~----~~~~~vi 371 (500)
.|.. + .....+|+.+. ..+|||||||.+ +.+.+..|..++..-. .. ....++.
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~---gGtL~Ldei~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERAD---GGTLFLDELATA-----------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVR 136 (329)
T ss_pred hccccccccCcccccCCchhhCC---CCEEEeCChHhC-----------CHHHHHHHHHHHHcCcEEecCCCceeccceE
Confidence 1110 0 01122344443 458999999999 4555566666665321 00 1124588
Q ss_pred EEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHHHH----HHHHh----cC------CCCCccccHHHHHH
Q 010809 372 VIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHG----SN------KKFDADVSLDVIAM 430 (500)
Q Consensus 372 VIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I----L~~~l----~~------~~l~~dvdl~~la~ 430 (500)
+|++||.. ..+.+.|.. |+. .+.+..|+..+|.+- ++.++ .+ ..++++.--.....
T Consensus 137 iI~at~~~l~~~~~~g~fr~dL~~--rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 137 LVCATNADLPALAAEGRFRADLLD--RLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred EEEechhhHHHHhhcCchHHHHHH--Hhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 99999753 234456666 664 567888999888762 22222 11 12333333344455
Q ss_pred hCCCCcHHHHHHHHHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A 451 (500)
.|+| |.++|+|+++.|+..+
T Consensus 214 ~WPG-NvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 214 HWPG-NVRELKNVVERSVYRH 233 (329)
T ss_pred CCCc-hHHHHHHHHHHHHHhC
Confidence 7898 9999999999998766
No 153
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.40 E-value=2.8e-12 Score=139.85 Aligned_cols=209 Identities=25% Similarity=0.353 Sum_probs=135.6
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhh-
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~- 304 (500)
++.+++|.+...+++.+.+..+... +.+|||+|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6889999999999999988875432 337999999999999999999765 46799999998775421
Q ss_pred ----hhhh------h-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCC----CC
Q 010809 305 ----VGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE----GN 367 (500)
Q Consensus 305 ----vG~~------~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~----~~ 367 (500)
.|.. + ......|+.+. ...|||||||.+ ..+.+..|..++..-. ... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~---gGtL~ldeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 320 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELAD---GGTLFLDEIGEL-----------PLALQAKLLRVLQYGEIQRVGSDRSLR 320 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcC---CCEEEecChhhC-----------CHHHHHHHHHHHhcCCEeeCCCCccee
Confidence 1210 0 01112344443 358999999999 4455555555554321 011 12
Q ss_pred CCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHHH----HHHHh----cC-----CCCCccccHHH
Q 010809 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEI----LKVHG----SN-----KKFDADVSLDV 427 (500)
Q Consensus 368 ~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I----L~~~l----~~-----~~l~~dvdl~~ 427 (500)
.++.+|++||..- .+.+.|.. |+. .+.+..|+..+|.+- ++.++ .+ ..++++.--..
T Consensus 321 ~~~RiI~~t~~~l~~~~~~~~f~~dL~~--rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L 397 (509)
T PRK05022 321 VDVRVIAATNRDLREEVRAGRFRADLYH--RLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAAL 397 (509)
T ss_pred cceEEEEecCCCHHHHHHcCCccHHHHh--ccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 3578999998632 24444544 553 677888999888762 22222 11 22334433444
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCC---CCcCHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAGRRGK---AAISSKEID 465 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~r~~~---~~It~~d~~ 465 (500)
....|+| |.++|+|+++.|+..+..... ..|+.+++.
T Consensus 398 ~~y~WPG-NvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 398 LAYDWPG-NVRELEHVISRAALLARARGAGRIVTLEAQHLD 437 (509)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHhcCCCccCccceecHHHcC
Confidence 5667998 999999999999988743211 146666654
No 154
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.40 E-value=2.3e-12 Score=140.79 Aligned_cols=207 Identities=22% Similarity=0.334 Sum_probs=133.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVE 302 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~ 302 (500)
...+|++++|.+...+++.+.+..+... ...|||+|++||||+++|+++-.. .+.||+.++|+.+.+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~ 268 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPD 268 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCH
Confidence 4578999999999888888777654322 226999999999999999998543 357999999987654
Q ss_pred hh-----hhhhh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCC---
Q 010809 303 MF-----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE--- 365 (500)
Q Consensus 303 ~~-----vG~~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~--- 365 (500)
.. .|... .....+|+.+. ...|||||||.+ +.+.+..|.+++..-. ...
T Consensus 269 ~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~ 334 (520)
T PRK10820 269 DVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEM-----------SPRMQAKLLRFLNDGTFRRVGEDH 334 (520)
T ss_pred HHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhC-----------CHHHHHHHHHHHhcCCcccCCCCc
Confidence 21 22111 11123455543 358999999999 4455666666665311 111
Q ss_pred -CCCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH-H-------HHHHhcCC-----CCCcccc
Q 010809 366 -GNTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE-I-------LKVHGSNK-----KFDADVS 424 (500)
Q Consensus 366 -~~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~-I-------L~~~l~~~-----~l~~dvd 424 (500)
.+.++.||++|+.+- .+.+.|.. |+. .+.+..|+.++|.+ | ++.+..+. .++++.
T Consensus 335 ~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a- 410 (520)
T PRK10820 335 EVHVDVRVICATQKNLVELVQKGEFREDLYY--RLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADL- 410 (520)
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHH-
Confidence 123578888887531 24455555 664 57888899888875 2 22222222 233333
Q ss_pred HHHH-HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 010809 425 LDVI-AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (500)
Q Consensus 425 l~~l-a~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~ 464 (500)
+..+ ...|+| +.++|+|++..|+..+ ....|+.+|+
T Consensus 411 ~~~L~~y~WPG-NvreL~nvl~~a~~~~---~~~~i~~~~~ 447 (520)
T PRK10820 411 NTVLTRYGWPG-NVRQLKNAIYRALTQL---EGYELRPQDI 447 (520)
T ss_pred HHHHhcCCCCC-HHHHHHHHHHHHHHhC---CCCcccHHHc
Confidence 3333 344998 9999999999998765 3445777775
No 155
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=8.2e-12 Score=139.28 Aligned_cols=166 Identities=26% Similarity=0.383 Sum_probs=127.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
..-.++-|+|.++.++.+.+++..= ..++-+|+|+||+|||.++..+|... +..++.+
T Consensus 165 r~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL 232 (786)
T COG0542 165 REGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL 232 (786)
T ss_pred hcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe
Confidence 4567999999999888777766531 12257999999999999999999854 5667888
Q ss_pred echhhHH--hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 296 SGSEFVE--MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 296 s~se~~~--~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
+...++. +|.|+.+++++.+.++.++..+.||||||||.+.+..+... + .-..-+.|...|. +..+.+|
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLA-------RGeL~~I 303 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALA-------RGELRCI 303 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHh-------cCCeEEE
Confidence 8887764 78999999999999999988899999999999965433211 1 2223344444444 5668899
Q ss_pred EeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 374 aaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
++|+..+ .-|+||-| ||+ .|.+..|+.++-..||+-.-.
T Consensus 304 GATT~~EYRk~iEKD~AL~R--RFQ-~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 304 GATTLDEYRKYIEKDAALER--RFQ-KVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred EeccHHHHHHHhhhchHHHh--cCc-eeeCCCCCHHHHHHHHHHHHH
Confidence 9987533 35899999 997 899999999999999985543
No 156
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1e-11 Score=129.24 Aligned_cols=190 Identities=18% Similarity=0.221 Sum_probs=129.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEE--
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI-- 295 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-------pfi~i-- 295 (500)
..+..|++|+|++++++.+...+..- +.|..+||+||+|+|||++|+.+|+.+.+ |....
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 34678999999999999998887633 34568999999999999999999998744 21110
Q ss_pred --echhhHHh-------h--h-------------hhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCC
Q 010809 296 --SGSEFVEM-------F--V-------------GVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGN 347 (500)
Q Consensus 296 --s~se~~~~-------~--v-------------G~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~ 347 (500)
.|...... + + ..+.+.+|++.+... .....|++|||+|.+ +
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l-----------~ 154 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM-----------N 154 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc-----------C
Confidence 11111000 0 0 011234555444432 234579999999999 2
Q ss_pred hHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHH
Q 010809 348 DEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDV 427 (500)
Q Consensus 348 ~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~ 427 (500)
....|.||..++. ++.+.++|..|+.++.+.+.+++ |+ ..+.+++|+.++-.++++.......++ +.....
T Consensus 155 ---~~aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~ 225 (351)
T PRK09112 155 ---RNAANAILKTLEE--PPARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEA 225 (351)
T ss_pred ---HHHHHHHHHHHhc--CCCCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHH
Confidence 3456778888875 34456666777888888899988 88 589999999999999998743322222 223567
Q ss_pred HHHhCCCCcHHHHHHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNE 446 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~e 446 (500)
++..+.| +++...++++.
T Consensus 226 i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 226 LLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred HHHHcCC-CHHHHHHHHhc
Confidence 7788887 77766666653
No 157
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-12 Score=136.89 Aligned_cols=198 Identities=26% Similarity=0.402 Sum_probs=134.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---h-cCCCEEEEechhhHH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---E-AGVPFFSISGSEFVE 302 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e-~~~pfi~is~se~~~ 302 (500)
...+.+++|.+...+++++-+..+... ..+||++|++||||+++|+++.. . .+.||+.+||..+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~ap~----------~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYAPS----------GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhCCC----------CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 457899999999999888877763222 23799999999999999999943 3 478999999998866
Q ss_pred hhhh-----------h-hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--C----
Q 010809 303 MFVG-----------V-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F---- 364 (500)
Q Consensus 303 ~~vG-----------~-~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~---- 364 (500)
.... . ....-..+|+.|-.+ +||+|||+.+ ..+.+..+..++.+-.- .
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GG---tLfLDEI~~L-----------P~~~Q~kLl~~le~g~~~rvG~~~ 209 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGG---TLFLDEIHRL-----------PPEGQEKLLRVLEEGEYRRVGGSQ 209 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCC---EEehhhhhhC-----------CHhHHHHHHHHHHcCceEecCCCC
Confidence 4222 1 123334577776544 8999999998 55667777777765221 1
Q ss_pred CCCCCeEEEEeeCC--CCCCch--hhcCCCCcceEEEecCCCHHHHHH--------HHHHHhcCCCCC--c---cccHHH
Q 010809 365 EGNTGIIVIAATNR--ADILDS--ALLRPGRFDRQVTVDVPDIRGRTE--------ILKVHGSNKKFD--A---DVSLDV 427 (500)
Q Consensus 365 ~~~~~viVIaaTN~--~~~Ld~--aLlrpgRfdr~I~v~~Pd~~eR~~--------IL~~~l~~~~l~--~---dvdl~~ 427 (500)
....+|.+|+|||. ++.+-. .+.+ |. ..+.+.+|+.++|.. .++.++++.+.. . +.-...
T Consensus 210 ~~~~dVRli~AT~~~l~~~~~~g~dl~~--rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 210 PRPVDVRLICATTEDLEEAVLAGADLTR--RL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CcCCCceeeeccccCHHHHHHhhcchhh--hh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12346899999874 222222 3433 22 146777888888865 233334444332 1 223455
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
++..++| |.++|+|++..++..+.
T Consensus 287 ~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 287 LAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred HhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 6677899 99999999999998884
No 158
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.39 E-value=1.3e-11 Score=124.38 Aligned_cols=217 Identities=22% Similarity=0.310 Sum_probs=139.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEech---
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGS--- 298 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~s--- 298 (500)
+.-+|++.+++.+..+-+.+..|.. .++| ++||+|++|.|||++++.++... .+|++++.+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~-----~Rmp-~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKR-----HRMP-NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcc-----cCCC-ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 4568899999998888888888863 3344 79999999999999999998743 3588888653
Q ss_pred ---hhHHhh---hhh-------hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC
Q 010809 299 ---EFVEMF---VGV-------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE 365 (500)
Q Consensus 299 ---e~~~~~---vG~-------~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~ 365 (500)
.|.... .|. ..+.-..+....+...+.+|+|||+|.+.. |......+.+|.|-...+.+
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa-------Gs~~~qr~~Ln~LK~L~NeL- 179 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA-------GSYRKQREFLNALKFLGNEL- 179 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc-------ccHHHHHHHHHHHHHHhhcc-
Confidence 222111 111 112223334555667788999999999842 22334444444443332221
Q ss_pred CCCCeEEEEeeCC--CCCCchhhcCCCCcceEEEecCCCH-HHHHHHHHHHhcCCCCC------ccccHHHHHHhCCCCc
Q 010809 366 GNTGIIVIAATNR--ADILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSNKKFD------ADVSLDVIAMRTPGFS 436 (500)
Q Consensus 366 ~~~~viVIaaTN~--~~~Ld~aLlrpgRfdr~I~v~~Pd~-~eR~~IL~~~l~~~~l~------~dvdl~~la~~t~G~s 436 (500)
.-.++.+++..- .=.-|+.+.+ ||+ .+.+|.-.. ++...++...-...++. ...-...+-..+.| +
T Consensus 180 -~ipiV~vGt~~A~~al~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G-~ 254 (302)
T PF05621_consen 180 -QIPIVGVGTREAYRALRTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEG-L 254 (302)
T ss_pred -CCCeEEeccHHHHHHhccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCC-c
Confidence 122343433221 2245788888 997 455543322 34555666655555443 22223567778998 5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 010809 437 GADLANLLNEAAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~d~~~ 466 (500)
.+++.++++.||..|++.|.+.||.+.++.
T Consensus 255 iG~l~~ll~~aA~~AI~sG~E~It~~~l~~ 284 (302)
T PF05621_consen 255 IGELSRLLNAAAIAAIRSGEERITREILDK 284 (302)
T ss_pred hHHHHHHHHHHHHHHHhcCCceecHHHHhh
Confidence 568999999999999999999999988875
No 159
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.39 E-value=1.2e-12 Score=137.80 Aligned_cols=197 Identities=25% Similarity=0.380 Sum_probs=132.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEechhhHHh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVEM 303 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~se~~~~ 303 (500)
...+.+|+|.+.+..++.+.++.....+ ..|||.|++||||-.+||+|-. ..+.||+++||..+.+.
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd----------~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSD----------STVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCC----------CeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 5678899999999999999998865443 2799999999999999999955 45789999999988765
Q ss_pred hhhh-hhhHHH-----------HHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH--hcCCCCC--
Q 010809 304 FVGV-GASRVR-----------DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE--MDGFEGN-- 367 (500)
Q Consensus 304 ~vG~-~~~~vr-----------~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e--md~~~~~-- 367 (500)
.... --...+ .-|+.|.. ..||+|||..+ .-+.+.-|...|++ ++....+
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdG---GTLFLDEIGel-----------PL~lQaKLLRvLQegEieRvG~~r~ 354 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADG---GTLFLDEIGEL-----------PLALQAKLLRVLQEGEIERVGGDRT 354 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCC---CeEechhhccC-----------CHHHHHHHHHHHhhcceeecCCCce
Confidence 3221 000112 23444433 48999999777 45566666666654 3333222
Q ss_pred --CCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHHH---H-----HHHhcCCC-----CCccccH
Q 010809 368 --TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEI---L-----KVHGSNKK-----FDADVSL 425 (500)
Q Consensus 368 --~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I---L-----~~~l~~~~-----l~~dvdl 425 (500)
-.|.||||||+-- ..-..|.- |++ ++.+..|+.++|.+- | +......+ ++++.--
T Consensus 355 ikVDVRiIAATNRDL~~~V~~G~FRaDLYy--RLs-V~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~ 431 (550)
T COG3604 355 IKVDVRVIAATNRDLEEMVRDGEFRADLYY--RLS-VFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALE 431 (550)
T ss_pred eEEEEEEEeccchhHHHHHHcCcchhhhhh--ccc-ccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHH
Confidence 2589999999721 12222333 443 788889999988762 1 22212222 3333322
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
......++| |.++|+|+++.|++.|
T Consensus 432 ~L~~y~wPG-NVRELen~veRavlla 456 (550)
T COG3604 432 LLSSYEWPG-NVRELENVVERAVLLA 456 (550)
T ss_pred HHHcCCCCC-cHHHHHHHHHHHHHHh
Confidence 333446888 9999999999999988
No 160
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.38 E-value=1.3e-11 Score=134.59 Aligned_cols=228 Identities=22% Similarity=0.290 Sum_probs=146.7
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHHhcCh---hhhhhh------------------CCCCC-ceEEEEcCCC
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKP---ERFTAI------------------GARIP-KGVLLVGPPG 274 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p---~~~~~~------------------G~~~p-~gvLL~GppG 274 (500)
..++|++++.+..|.|+.|-+..-+.+..++..+.-. .++.++ -.+++ +-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 5679999999999999999999888777766543211 111111 11222 5689999999
Q ss_pred ChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHH--------hCCCeEEEEcCcchhhhccCCCCCCC
Q 010809 275 TGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK--------ENAPCIVFVDEIDAVGRQRGTGIGGG 346 (500)
Q Consensus 275 TGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~--------~~~p~IIfIDEID~l~~~r~~~~~~~ 346 (500)
-|||+||+.+|+++|+.++.|++||-.. +..++..++.|- ...|..|+|||||.-
T Consensus 337 lGKTTLAHViAkqaGYsVvEINASDeRt------~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa----------- 399 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQAGYSVVEINASDERT------APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA----------- 399 (877)
T ss_pred CChhHHHHHHHHhcCceEEEeccccccc------HHHHHHHHHHHHhhccccccCCCcceEEEecccCC-----------
Confidence 9999999999999999999999998432 233333333331 256888999999864
Q ss_pred ChHHHHHHHHHHHHh----cCCCC---------C---CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHH
Q 010809 347 NDEREQTLNQLLTEM----DGFEG---------N---TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (500)
Q Consensus 347 ~~e~~~~L~~LL~em----d~~~~---------~---~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL 410 (500)
....-.++..++..- .|-.. . -.-.|||.||..-. |+|+.=.-|..++.|..|...-..+-|
T Consensus 400 ~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL 477 (877)
T KOG1969|consen 400 PRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERL 477 (877)
T ss_pred cHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHH
Confidence 333344444444411 11110 0 01357888886433 555321147778999999888777777
Q ss_pred HHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC--CCcCHHHHHH
Q 010809 411 KVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK--AAISSKEIDD 466 (500)
Q Consensus 411 ~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~--~~It~~d~~~ 466 (500)
+..+.+.++.- |...|...++ ++-.||++.+|....+|.+..+ ..+.+.++.+
T Consensus 478 ~~IC~rE~mr~--d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a 532 (877)
T KOG1969|consen 478 NEICHRENMRA--DSKALNALCE-LTQNDIRSCINTLQFLASNVDRRDSSISVKLICA 532 (877)
T ss_pred HHHHhhhcCCC--CHHHHHHHHH-HhcchHHHHHHHHHHHHHhcccccccchhhhhhh
Confidence 77776666553 3344444444 3445999999999988865443 2355544443
No 161
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.38 E-value=3.5e-12 Score=142.72 Aligned_cols=212 Identities=21% Similarity=0.328 Sum_probs=136.0
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE- 302 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~- 302 (500)
..+|++++|.+.+.+++.+.+..+... ..+|||+|++||||+++|+++.... +.||+.++|..+.+
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999999999888877764332 2269999999999999999997654 57999999986643
Q ss_pred ----hhhhhh--h--hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CCC----CC
Q 010809 303 ----MFVGVG--A--SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----NT 368 (500)
Q Consensus 303 ----~~vG~~--~--~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~----~~ 368 (500)
.+.|.. . ......|+.+ ...+||||||+.+ +...+..|.+++.+-.- ... +.
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 456 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYL-----------SPELQSALLQVLKTGVITRLDSRRLIPV 456 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceEEe
Confidence 222311 0 0011123333 3468999999998 45556666666643110 011 12
Q ss_pred CeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhc----C----CCCCccccHHHHH
Q 010809 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----N----KKFDADVSLDVIA 429 (500)
Q Consensus 369 ~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~----~----~~l~~dvdl~~la 429 (500)
++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.++. . ..++++.--....
T Consensus 457 ~~riI~~t~~~l~~~~~~~~f~~dL~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 457 DVRVIATTTADLAMLVEQNRFSRQLYY--ALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred eEEEEEeccCCHHHHHhcCCChHHHhh--hhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 578999988631 23333333 443 67888899999864 2222222 1 1233333233345
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 430 MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
..|+| +.++|+|+++.|...+ ....|+.+|+...+.
T Consensus 534 y~WPG-NvreL~~~l~~~~~~~---~~~~i~~~~lp~~~~ 569 (638)
T PRK11388 534 YRWPG-NDFELRSVIENLALSS---DNGRIRLSDLPEHLF 569 (638)
T ss_pred CCCCC-hHHHHHHHHHHHHHhC---CCCeecHHHCchhhh
Confidence 56898 9999999999988764 345688888876653
No 162
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.38 E-value=3.8e-12 Score=122.79 Aligned_cols=201 Identities=19% Similarity=0.286 Sum_probs=130.7
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi 293 (500)
-.|++++.+..+.||+|+++..+.|.-+...-..| +++|.||||||||+-+.++|+++= --++
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP------------~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMP------------NLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCC------------ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 34899999999999999999999888777655555 699999999999999999999872 2355
Q ss_pred EEechhhHHhhhhhhhhHHHH---HHHHHHhCC----CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC
Q 010809 294 SISGSEFVEMFVGVGASRVRD---LFKKAKENA----PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG 366 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~---lf~~a~~~~----p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~ 366 (500)
.+++|+- .|.+.+|. .|.+-+-.- -.||++||+|.+ .+..+|.+..-+.-. ..
T Consensus 83 ELNASde------RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM-----------T~gAQQAlRRtMEiy---S~ 142 (333)
T KOG0991|consen 83 ELNASDE------RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM-----------TAGAQQALRRTMEIY---SN 142 (333)
T ss_pred hccCccc------cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh-----------hhHHHHHHHHHHHHH---cc
Confidence 6666552 23333443 344433322 259999999998 445666666655533 22
Q ss_pred CCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHH-HHHHHHHHh-cCCCCCccccHHHHHHhCCCCcHHHHHHHH
Q 010809 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRG-RTEILKVHG-SNKKFDADVSLDVIAMRTPGFSGADLANLL 444 (500)
Q Consensus 367 ~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~e-R~~IL~~~l-~~~~l~~dvdl~~la~~t~G~sgadL~~lv 444 (500)
...+..++|..+.+-+.+.+ |+. .+.+...+..+ ..++++..- .+.+. .+..++.+....+| |+++.+
T Consensus 143 --ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~y-t~dgLeaiifta~G----DMRQal 212 (333)
T KOG0991|consen 143 --TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNY-TDDGLEAIIFTAQG----DMRQAL 212 (333)
T ss_pred --cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCC-CcchHHHhhhhccc----hHHHHH
Confidence 34677788998888888888 774 44444444443 333333322 23333 23447777777776 777777
Q ss_pred HHHHHHHHHcCCCCcCHHH
Q 010809 445 NEAAILAGRRGKAAISSKE 463 (500)
Q Consensus 445 ~eAa~~A~r~~~~~It~~d 463 (500)
|.... .-.+-..|+.+.
T Consensus 213 NnLQs--t~~g~g~Vn~en 229 (333)
T KOG0991|consen 213 NNLQS--TVNGFGLVNQEN 229 (333)
T ss_pred HHHHH--Hhccccccchhh
Confidence 76442 233444444443
No 163
>PHA02244 ATPase-like protein
Probab=99.38 E-value=2.3e-11 Score=126.05 Aligned_cols=147 Identities=22% Similarity=0.354 Sum_probs=94.9
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh--hh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF--VG 306 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~--vG 306 (500)
.+.-+.+..........+..++.... +|||+||||||||++|+++|..++.||+.+++. .+.+ .|
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~-----------PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l--~d~~~L~G 161 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANI-----------PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAI--MDEFELKG 161 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCC-----------CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecC--hHHHhhcc
Confidence 34344444444455555555554432 699999999999999999999999999999853 2211 11
Q ss_pred h--hhhHH--HHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh-----c-CCCCCCCeEEEEee
Q 010809 307 V--GASRV--RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----D-GFEGNTGIIVIAAT 376 (500)
Q Consensus 307 ~--~~~~v--r~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em-----d-~~~~~~~viVIaaT 376 (500)
. ..... ..++...+ ...+|+|||++.+ ..+....|+.++..- + .+..+.++.+|+|+
T Consensus 162 ~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a-----------~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATs 228 (383)
T PHA02244 162 FIDANGKFHETPFYEAFK--KGGLFFIDEIDAS-----------IPEALIIINSAIANKFFDFADERVTAHEDFRVISAG 228 (383)
T ss_pred cccccccccchHHHHHhh--cCCEEEEeCcCcC-----------CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEee
Confidence 0 00011 12233232 3479999999987 344455566665421 1 12234679999999
Q ss_pred CCC-----------CCCchhhcCCCCcceEEEecCCCHH
Q 010809 377 NRA-----------DILDSALLRPGRFDRQVTVDVPDIR 404 (500)
Q Consensus 377 N~~-----------~~Ld~aLlrpgRfdr~I~v~~Pd~~ 404 (500)
|.+ ..+++++++ ||- .++++.|+..
T Consensus 229 N~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~ 264 (383)
T PHA02244 229 NTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKI 264 (383)
T ss_pred CCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHH
Confidence 973 468999999 995 7999999843
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.37 E-value=1.6e-11 Score=141.03 Aligned_cols=198 Identities=22% Similarity=0.293 Sum_probs=127.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCce-EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh---
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~g-vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~--- 303 (500)
+.|+|++++.+.+.+.+...+..-.+ ...|.+ +||+||||||||.+|+++|..+ ...++.+++++|.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~----~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~ 641 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLED----PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTV 641 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCC----CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhh
Confidence 57889999999888877653211000 123555 7999999999999999999987 458899999998653
Q ss_pred ---------hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC------CCC
Q 010809 304 ---------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNT 368 (500)
Q Consensus 304 ---------~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~------~~~ 368 (500)
|+|.... ..+.+..+++.++||+|||||.. +.+....+.+++..-.-.. .-.
T Consensus 642 ~~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka-----------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~ 708 (852)
T TIGR03345 642 SRLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKA-----------HPDVLELFYQVFDKGVMEDGEGREIDFK 708 (852)
T ss_pred ccccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhc-----------CHHHHHHHHHHhhcceeecCCCcEEecc
Confidence 3332221 12445556677899999999986 4444445555554321000 014
Q ss_pred CeEEEEeeCCCC-----------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC--
Q 010809 369 GIIVIAATNRAD-----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-- 417 (500)
Q Consensus 369 ~viVIaaTN~~~-----------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~-- 417 (500)
+.++|+|||... .+.|+++. |++ .|.|.+.+.++..+|+...+...
T Consensus 709 n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 709 NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 689999998411 14566677 897 89999999999999998766431
Q ss_pred ------CCCcccc---HHHHHHhCC--CCcHHHHHHHHHHHH
Q 010809 418 ------KFDADVS---LDVIAMRTP--GFSGADLANLLNEAA 448 (500)
Q Consensus 418 ------~l~~dvd---l~~la~~t~--G~sgadL~~lv~eAa 448 (500)
+..-.++ .+.|+.... .+-.+.|+++++.-.
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 2221222 344555442 234666766666533
No 165
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=2e-11 Score=127.79 Aligned_cols=187 Identities=19% Similarity=0.206 Sum_probs=126.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-------E----
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-------F---- 293 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pf-------i---- 293 (500)
..+.++++|+|++++++.|.+.+.. .+.|..+||+||+|+||+++|.++|+.+-+.- .
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 3567899999999999999987764 24566899999999999999999998662210 0
Q ss_pred --EE--ech---hh--------H--Hh-hhh--------hhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCC
Q 010809 294 --SI--SGS---EF--------V--EM-FVG--------VGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGI 343 (500)
Q Consensus 294 --~i--s~s---e~--------~--~~-~vG--------~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~ 343 (500)
.+ .|. .+ . +. +.+ ...+.+|++.+.+. ...+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 00 011 00 0 00 001 12244666665542 345789999999998
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc
Q 010809 344 GGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV 423 (500)
Q Consensus 344 ~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv 423 (500)
+ ....|.||+.++. ++.+.++|.+|+.++.+.+.+++ |+. .+.+++|+.++-.+++..+... ..+.
T Consensus 154 ---~---~~aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~---~~~~ 219 (365)
T PRK07471 154 ---N---ANAANALLKVLEE--PPARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPD---LPDD 219 (365)
T ss_pred ---C---HHHHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhccc---CCHH
Confidence 2 3456777877773 34567888889999889889888 884 8999999999988888765421 1122
Q ss_pred cHHHHHHhCCCCcHHHHHHHHH
Q 010809 424 SLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 424 dl~~la~~t~G~sgadL~~lv~ 445 (500)
....++..+.| ++....++++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHhc
Confidence 23566777777 6655544443
No 166
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.37 E-value=2.7e-11 Score=120.52 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=119.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC-CEE--EE-----echhhHHhh---hhhh---h---h---HHHHHH-HHHHhCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV-PFF--SI-----SGSEFVEMF---VGVG---A---S---RVRDLF-KKAKENAP 324 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~-pfi--~i-----s~se~~~~~---vG~~---~---~---~vr~lf-~~a~~~~p 324 (500)
.++|+||+|+|||++++.+++++.. .+. .+ +..++.... .|.. . . .+.+.+ .......+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5889999999999999999998752 222 11 111222111 1211 1 1 122222 22335667
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC--CCCCc----hhhcCCCCcceEEEe
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR--ADILD----SALLRPGRFDRQVTV 398 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~--~~~Ld----~aLlrpgRfdr~I~v 398 (500)
++|+|||+|.+. ......+..+..... .....+.|+.+... .+.+. ..+.+ |+...+.+
T Consensus 125 ~vliiDe~~~l~-----------~~~~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~--r~~~~~~l 189 (269)
T TIGR03015 125 ALLVVDEAQNLT-----------PELLEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQ--RIIASCHL 189 (269)
T ss_pred eEEEEECcccCC-----------HHHHHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHh--heeeeeeC
Confidence 899999999982 222233333322211 11222333333321 11111 23445 77778899
Q ss_pred cCCCHHHHHHHHHHHhcCCCC-----CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 399 DVPDIRGRTEILKVHGSNKKF-----DADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l-----~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
++.+.++..+++...+...+. -.+..++.+.+.+.| .++.|..+|+.|...|..++...|+.+++++++..+
T Consensus 190 ~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G-~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 190 GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRG-IPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 999999999999888764332 123457888999999 577899999999999999999999999999999874
No 167
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=2.7e-11 Score=139.55 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=132.9
Q ss_pred ccccCChHHHHHHHHHHHHhc----ChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~----~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~ 303 (500)
+.|+|++++.+.+.+.+.... +|. ++...+||+||||||||++|+++|..+ +.+++.++++++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCC-------CCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc
Confidence 579999999999998887643 221 233468999999999999999999976 579999999987542
Q ss_pred -----hhhhhh-----hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc---CC---CCC
Q 010809 304 -----FVGVGA-----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---GF---EGN 367 (500)
Q Consensus 304 -----~vG~~~-----~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd---~~---~~~ 367 (500)
+.|... ..-..+.+..+....+||+|||||.+ +......+.+++.+-. +. ..-
T Consensus 638 ~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka-----------~~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA-----------HPDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC-----------CHHHHHHHHHHHhcCceecCCCeEEec
Confidence 222111 11123444455566689999999987 4455555555554321 10 011
Q ss_pred CCeEEEEeeCCCC-------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC------
Q 010809 368 TGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------ 416 (500)
Q Consensus 368 ~~viVIaaTN~~~-------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~------ 416 (500)
.+.+||+|||... .+.|.|+. |+|.++.+.+++.++..+|+...+..
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~ 784 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLA 784 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999722 13356666 99999999999999999988766532
Q ss_pred -CCCCccc---cHHHHHHh-C-CCCcHHHHHHHHHHHHHHH
Q 010809 417 -KKFDADV---SLDVIAMR-T-PGFSGADLANLLNEAAILA 451 (500)
Q Consensus 417 -~~l~~dv---dl~~la~~-t-~G~sgadL~~lv~eAa~~A 451 (500)
..+...+ ..+.|+.. + +.+..+.|+++++......
T Consensus 785 ~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~ 825 (852)
T TIGR03346 785 ERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENP 825 (852)
T ss_pred HCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHH
Confidence 1111112 24455554 2 2356788888888766443
No 168
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=4e-11 Score=123.77 Aligned_cols=129 Identities=36% Similarity=0.463 Sum_probs=88.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHH--------------HHHHHHhCCCeEEEEcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRD--------------LFKKAKENAPCIVFVDE 331 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~--------------lf~~a~~~~p~IIfIDE 331 (500)
++||.||||||||++|+++|..++.+|+.+.|......--..|...... +|...+ +|+++||
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DE 120 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDE 120 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEec
Confidence 6999999999999999999999999999999986543211111111111 111111 4999999
Q ss_pred cchhhhccCCCCCCCChHHHHHHHHHHHHhc------C-CCCCCCeEEEEeeC-----CCCCCchhhcCCCCcceEEEec
Q 010809 332 IDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------G-FEGNTGIIVIAATN-----RADILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 332 ID~l~~~r~~~~~~~~~e~~~~L~~LL~emd------~-~~~~~~viVIaaTN-----~~~~Ld~aLlrpgRfdr~I~v~ 399 (500)
|+.. ..+.+..|.+.+.+.. . +.-+..++||+|.| ....+++++++ ||...+.++
T Consensus 121 Inra-----------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 121 INRA-----------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred cccC-----------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 9886 3444445555554421 1 34456799999999 44468999999 998899999
Q ss_pred CCCHHHHHHHHH
Q 010809 400 VPDIRGRTEILK 411 (500)
Q Consensus 400 ~Pd~~eR~~IL~ 411 (500)
.|+.++-..++.
T Consensus 188 yp~~~~e~~~i~ 199 (329)
T COG0714 188 YPDSEEEERIIL 199 (329)
T ss_pred CCCchHHHHHHH
Confidence 995554334333
No 169
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=4.3e-11 Score=137.66 Aligned_cols=167 Identities=23% Similarity=0.315 Sum_probs=113.6
Q ss_pred cccccCChHHHHHHHHHHHHhc----ChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLK----KPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~----~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
++.|+|++++.+.+.+.+...+ +|. ++...++|+||||||||++|+++|..+ +.+++.++++++.+
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~-------~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPN-------RPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCC-------CCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence 4579999999999998887643 222 112358999999999999999999876 56899999998865
Q ss_pred h-----hhhhh-----hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh---cCC---CC
Q 010809 303 M-----FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM---DGF---EG 366 (500)
Q Consensus 303 ~-----~vG~~-----~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em---d~~---~~ 366 (500)
. .+|.. ...-..+.+..+....++|+|||++.+ +......+.+++.+- ++. ..
T Consensus 640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka-----------~~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA-----------HPDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC-----------CHHHHHHHHHHHhhCceecCCceEEe
Confidence 3 22211 111112333334445589999999987 445555555555431 110 01
Q ss_pred CCCeEEEEeeCCCC-------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC
Q 010809 367 NTGIIVIAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (500)
Q Consensus 367 ~~~viVIaaTN~~~-------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~ 416 (500)
-.+.++|+|||... .+.|+++. |+|..+.+.+++.++..+|++..+..
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~ 781 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQR 781 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHH
Confidence 12467899998621 24467887 99999999999999998888766643
No 170
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.33 E-value=2.4e-11 Score=137.11 Aligned_cols=197 Identities=26% Similarity=0.398 Sum_probs=128.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~ 303 (500)
+.+|++++|.+.+.+.+.+.+..+... ..+|||+|++|||||++|+++... .+.||+.++|..+.+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 457899999999999998888765432 237999999999999999999764 4679999999865432
Q ss_pred -----hhhh------h-hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCC----
Q 010809 304 -----FVGV------G-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFE---- 365 (500)
Q Consensus 304 -----~vG~------~-~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~---- 365 (500)
..|. + .......|+.+. ..+|||||||.+ +.+.+..|..++..-. ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~---~GtL~Ldei~~L-----------~~~~Q~~L~~~l~~~~~~~~g~~~~ 507 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELAD---KSSLFLDEVGDM-----------PLELQPKLLRVLQEQEFERLGSNKI 507 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcC---CCeEEEechhhC-----------CHHHHHHHHHHHHhCCEEeCCCCCc
Confidence 1221 0 011123444443 359999999998 4455555555554321 111
Q ss_pred CCCCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHh----cCC-----CCCccccH
Q 010809 366 GNTGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNK-----KFDADVSL 425 (500)
Q Consensus 366 ~~~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l----~~~-----~l~~dvdl 425 (500)
...++.+|++|+..- .+.+.|.. |+. .+.+..|+.++|.+ +++.++ .+. .++++.--
T Consensus 508 ~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~--~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 508 IQTDVRLIAATNRDLKKMVADREFRSDLYY--RLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred ccceEEEEEeCCCCHHHHHHcCcccHHHHh--ccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 123678999997632 22333333 443 67888999999877 223222 211 13333323
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 426 DVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 426 ~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
......|+| |.++|+++++.|+..+
T Consensus 585 ~L~~y~WPG-NvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPG-NVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCC-cHHHHHHHHHHHHHhC
Confidence 344567998 9999999999999765
No 171
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=3.4e-11 Score=130.53 Aligned_cols=213 Identities=23% Similarity=0.308 Sum_probs=133.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc------------------
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------------------ 288 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~------------------ 288 (500)
...|+||.|++.+++.+.-.+. ...+++|.||||||||++|+++++.+
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~ 253 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLV 253 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccch
Confidence 3589999999998776554331 12379999999999999999998632
Q ss_pred ----------CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 289 ----------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 289 ----------~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
..||...+++......+|.+...-...+..|. ..+|||||++.+ ....++.|.+.+
T Consensus 254 g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~---~GvLfLDEi~e~-----------~~~~~~~L~~~L 319 (499)
T TIGR00368 254 GKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAH---NGVLFLDELPEF-----------KRSVLDALREPI 319 (499)
T ss_pred hhhccccccccCCccccccccchhhhhCCccccchhhhhccC---CCeEecCChhhC-----------CHHHHHHHHHHH
Confidence 23454444443333333433222222344442 359999999988 344455555555
Q ss_pred HHhc----C----CCCCCCeEEEEeeCCC------C-----------------CCchhhcCCCCcceEEEecCCCHHH--
Q 010809 359 TEMD----G----FEGNTGIIVIAATNRA------D-----------------ILDSALLRPGRFDRQVTVDVPDIRG-- 405 (500)
Q Consensus 359 ~emd----~----~~~~~~viVIaaTN~~------~-----------------~Ld~aLlrpgRfdr~I~v~~Pd~~e-- 405 (500)
+.-. . ..-..++.+|+++|.- + .+...|+. |||-++.++.++.++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~ 397 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLL 397 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHh
Confidence 4211 0 0113468999999852 1 47788888 999999998775432
Q ss_pred -----------HHHHHHH------HhcCC---CCCcccc-------------HH---HHHHhCCCCcHHHHHHHHHHHHH
Q 010809 406 -----------RTEILKV------HGSNK---KFDADVS-------------LD---VIAMRTPGFSGADLANLLNEAAI 449 (500)
Q Consensus 406 -----------R~~IL~~------~l~~~---~l~~dvd-------------l~---~la~~t~G~sgadL~~lv~eAa~ 449 (500)
|.++.+. ..++. .+...+. .. .-+....++|.+....+++-|-.
T Consensus 398 ~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArT 477 (499)
T TIGR00368 398 STGSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVART 477 (499)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 2223221 11111 1111111 11 11222345789999999999999
Q ss_pred HHHHcCCCCcCHHHHHHHHH
Q 010809 450 LAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 450 ~A~r~~~~~It~~d~~~Ai~ 469 (500)
.|..++.+.|+.+|+.+|+.
T Consensus 478 iAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 478 IADLKEEKNISREHLAEAIE 497 (499)
T ss_pred HHhhcCCCCCCHHHHHHHHh
Confidence 99999999999999999974
No 172
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=4.4e-11 Score=122.62 Aligned_cols=170 Identities=15% Similarity=0.270 Sum_probs=118.2
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--------CEEEEechh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------PFFSISGSE 299 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~--------pfi~is~se 299 (500)
.+|+||+|++.+++.+...+.. .+.|+.+||+||+|+|||++|+++|..+-+ .++.+...+
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 3699999999999988887642 245667899999999999999999997532 122232210
Q ss_pred hHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
. ...+.+.+|++.+.+.. ....|++|||+|.+ + ....|.||..++. ++.++++|.+
T Consensus 70 --~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m-----------~---~~a~naLLK~LEe--pp~~t~~il~ 129 (313)
T PRK05564 70 --K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM-----------T---EQAQNAFLKTIEE--PPKGVFIILL 129 (313)
T ss_pred --C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechhhc-----------C---HHHHHHHHHHhcC--CCCCeEEEEE
Confidence 0 01123456776665422 33469999999998 2 3456788888874 4566777777
Q ss_pred eCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 010809 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (500)
Q Consensus 376 TN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G 434 (500)
|+.++.+.+.+++ |+. .+.++.|+.++....++..... .+ +..+..++..+.|
T Consensus 130 ~~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~l~~~~~~--~~-~~~~~~l~~~~~g 182 (313)
T PRK05564 130 CENLEQILDTIKS--RCQ-IYKLNRLSKEEIEKFISYKYND--IK-EEEKKSAIAFSDG 182 (313)
T ss_pred eCChHhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHHhcC--CC-HHHHHHHHHHcCC
Confidence 7888999999999 884 8999999999888777765432 22 2234556666665
No 173
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.2e-11 Score=137.91 Aligned_cols=160 Identities=26% Similarity=0.387 Sum_probs=118.2
Q ss_pred ccccCChHHHHHHHHHHHH----hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhHHh
Q 010809 231 DDVAGVDEAKQDFMEVVEF----LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEM 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~----l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~~~ 303 (500)
..|+|++++...+...+.. +++|. ++-...||.||+|+|||-||+++|..+. ..++.+++|+|.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~-------rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPN-------RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCC-------CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 5799999999999888876 44443 2223578899999999999999999985 89999999999885
Q ss_pred ------------hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC---C--
Q 010809 304 ------------FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---G-- 366 (500)
Q Consensus 304 ------------~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~---~-- 366 (500)
|||..+ =..+-+..+++..|||++|||+.. |. .++|-||+-||.=. +
T Consensus 564 HsVSrLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKA-----------Hp---dV~nilLQVlDdGrLTD~~G 627 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKA-----------HP---DVFNLLLQVLDDGRLTDGQG 627 (786)
T ss_pred HHHHHHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhc-----------CH---HHHHHHHHHhcCCeeecCCC
Confidence 344332 123555567777899999999986 43 35555565555311 1
Q ss_pred ----CCCeEEEEeeCCCC----------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh
Q 010809 367 ----NTGIIVIAATNRAD----------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 367 ----~~~viVIaaTN~~~----------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l 414 (500)
-.+.++|+|||--. ...|+++. |+|.+|.|.+.+.+...+|+...+
T Consensus 628 r~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L 705 (786)
T COG0542 628 RTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQL 705 (786)
T ss_pred CEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHH
Confidence 12589999998311 13456666 999999999999999999988766
Q ss_pred c
Q 010809 415 S 415 (500)
Q Consensus 415 ~ 415 (500)
.
T Consensus 706 ~ 706 (786)
T COG0542 706 N 706 (786)
T ss_pred H
Confidence 4
No 174
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.29 E-value=1.1e-10 Score=134.20 Aligned_cols=168 Identities=21% Similarity=0.267 Sum_probs=113.7
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh---
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--- 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~-gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~--- 303 (500)
+.|+|++++++.+.+.+...+..-. ....|. .+||+||+|||||++|+++|..+ ..+++.+++++|.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~----~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLK----NPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhccc----CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccH
Confidence 5789999999999888765321100 012243 47899999999999999999987 468999999988542
Q ss_pred --hhhhh-----hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc---C--C-CCCCCe
Q 010809 304 --FVGVG-----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD---G--F-EGNTGI 370 (500)
Q Consensus 304 --~vG~~-----~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd---~--~-~~~~~v 370 (500)
+.|.. ......+.+..+....+||+|||+|.+ +....+.|.+++.+-. . . ..-.+.
T Consensus 585 ~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka-----------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~ 653 (821)
T CHL00095 585 SKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA-----------HPDIFNLLLQILDDGRLTDSKGRTIDFKNT 653 (821)
T ss_pred HHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC-----------CHHHHHHHHHHhccCceecCCCcEEecCce
Confidence 22221 112234556666666799999999987 4444444444444310 0 0 012468
Q ss_pred EEEEeeCCCCC-------------------------------------CchhhcCCCCcceEEEecCCCHHHHHHHHHHH
Q 010809 371 IVIAATNRADI-------------------------------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (500)
Q Consensus 371 iVIaaTN~~~~-------------------------------------Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~ 413 (500)
++|+|||.... +.|+++. |+|.++.|.+.+.++..+|++..
T Consensus 654 i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 654 LIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred EEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHH
Confidence 99999985211 2245666 99999999999999999998876
Q ss_pred hc
Q 010809 414 GS 415 (500)
Q Consensus 414 l~ 415 (500)
+.
T Consensus 732 l~ 733 (821)
T CHL00095 732 LK 733 (821)
T ss_pred HH
Confidence 65
No 175
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.29 E-value=9e-11 Score=119.47 Aligned_cols=150 Identities=25% Similarity=0.331 Sum_probs=104.1
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---------------------
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--------------------- 289 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~--------------------- 289 (500)
++++|.+++...+......-. +.|..+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 356777777777776655321 3344699999999999999999999875
Q ss_pred ---CCEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 290 ---VPFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 290 ---~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
-.++.++.++-...- .....++++-+.... ....|++|||+|.+. ....|.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt--------------~~A~nallk~lE 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT--------------EDAANALLKTLE 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh--------------HHHHHHHHHHhc
Confidence 356666666543211 223445555554422 235799999999992 356778888887
Q ss_pred CCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHH
Q 010809 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILK 411 (500)
Q Consensus 363 ~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~ 411 (500)
. +..+..+|.+||.++.+-+.+++ |+. .+.|++|+...+....+
T Consensus 135 e--p~~~~~~il~~n~~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 E--PPKNTRFILITNDPSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred c--CCCCeEEEEEcCChhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 4 45567888899999998889998 884 77887766554444333
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.29 E-value=1.2e-10 Score=124.41 Aligned_cols=213 Identities=18% Similarity=0.160 Sum_probs=125.4
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEech-hhHHhhhhhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS-EFVEMFVGVG 308 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~s-e~~~~~vG~~ 308 (500)
.++|.+++.+.+..++. . ..++||.||||||||++|++++...+. +|....+. ...+..+|..
T Consensus 21 ~i~gre~vI~lll~aal--a------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--S------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--c------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 46677777665544332 1 227999999999999999999986642 56655443 1122223321
Q ss_pred -hhHH--HHHHHHHHhC---CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEE
Q 010809 309 -ASRV--RDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIA 374 (500)
Q Consensus 309 -~~~v--r~lf~~a~~~---~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVIa 374 (500)
.... ..-|.....+ ...++|+|||..+ +. .+.+.||..|+.-. .-+..++++
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra-----------sp---~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA-----------GP---AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccC-----------CH---HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 0000 1122222111 2249999999766 22 35555565552211 001134445
Q ss_pred eeCCCC---CCchhhcCCCCcceEEEecCCC-HHHHHHHHHHHhcC--C--C----CC-----------------ccc-c
Q 010809 375 ATNRAD---ILDSALLRPGRFDRQVTVDVPD-IRGRTEILKVHGSN--K--K----FD-----------------ADV-S 424 (500)
Q Consensus 375 aTN~~~---~Ld~aLlrpgRfdr~I~v~~Pd-~~eR~~IL~~~l~~--~--~----l~-----------------~dv-d 424 (500)
|||... ...++++. ||-..+.+++|+ .++..+++...... . + ++ +.+ +
T Consensus 153 ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~e 230 (498)
T PRK13531 153 ASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFE 230 (498)
T ss_pred ECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHH
Confidence 557422 23458888 998799999997 45667888754221 1 1 11 000 0
Q ss_pred -HHHHHHh---C---CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCc
Q 010809 425 -LDVIAMR---T---PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 425 -l~~la~~---t---~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~ 475 (500)
+..+... + ...|++--..+++.|...|.-.|+..|+.+|+. .+..++...
T Consensus 231 yI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 231 LIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 1122221 2 236888888999999999999999999999999 676666653
No 177
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.29 E-value=6.8e-11 Score=129.01 Aligned_cols=224 Identities=18% Similarity=0.232 Sum_probs=131.6
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-EEEE---echhhHHhhhh-
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-FFSI---SGSEFVEMFVG- 306 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-fi~i---s~se~~~~~vG- 306 (500)
+|.|.+.+|..+.-.+---..+..-.....+..-+|||+|+||||||++|++++...... |... ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~ 283 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRD 283 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEc
Confidence 578888887766443322111110001112223379999999999999999999876432 2221 22112110000
Q ss_pred --hhhhHH-HHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEEe
Q 010809 307 --VGASRV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIAA 375 (500)
Q Consensus 307 --~~~~~v-r~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em------d~~--~~~~~viVIaa 375 (500)
.+...+ ...+..| ...+++|||+|.+ .+..+..+.+.+.+= .|. .-+.++.||||
T Consensus 284 ~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l-----------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa 349 (509)
T smart00350 284 PETREFTLEGGALVLA---DNGVCCIDEFDKM-----------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAA 349 (509)
T ss_pred cCcceEEecCccEEec---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence 000000 0011112 2359999999998 333444444444321 011 11346899999
Q ss_pred eCCCC-------------CCchhhcCCCCcceEE-EecCCCHHHHHHHHHHHhcCCC-----------------------
Q 010809 376 TNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEILKVHGSNKK----------------------- 418 (500)
Q Consensus 376 TN~~~-------------~Ld~aLlrpgRfdr~I-~v~~Pd~~eR~~IL~~~l~~~~----------------------- 418 (500)
+|..+ .|++++++ |||..+ ..+.|+.+.+.+|.+..++...
T Consensus 350 ~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi 427 (509)
T smart00350 350 ANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYI 427 (509)
T ss_pred eCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHH
Confidence 99743 58999999 999854 5578999988888876432100
Q ss_pred ------CCcccc---HHHHH-----Hh----------CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 419 ------FDADVS---LDVIA-----MR----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 419 ------l~~dvd---l~~la-----~~----------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
+.+.+. .+.+. .+ .-+.|++.+..+++-|..+|..++++.|+.+|+++|++=+
T Consensus 428 ~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~ 504 (509)
T smart00350 428 AYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLL 504 (509)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 001111 11111 01 1246889999999999999999999999999999998754
No 178
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.29 E-value=9.6e-11 Score=130.05 Aligned_cols=101 Identities=18% Similarity=0.255 Sum_probs=66.0
Q ss_pred CeEEEEeeCCC--CCCchhhcCCCCcc---eEEEec--CCC-HHHHHHHHHHH---hcCCCCCcccc---HHHHH---Hh
Q 010809 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVD--VPD-IRGRTEILKVH---GSNKKFDADVS---LDVIA---MR 431 (500)
Q Consensus 369 ~viVIaaTN~~--~~Ld~aLlrpgRfd---r~I~v~--~Pd-~~eR~~IL~~~---l~~~~l~~dvd---l~~la---~~ 431 (500)
++.+|+++|.. ..+++++++ ||+ -.++++ .|+ .+.|.++.+.. +++.+..+..+ +..+. .+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R 345 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQR 345 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHH
Confidence 68899999974 578999999 998 555553 344 45555554432 22221111222 22222 11
Q ss_pred CC------CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 432 TP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 432 t~------G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
.. -.+.++|.+++++|...|..+++..|+.+|+++|++..
T Consensus 346 ~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 346 RAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLA 391 (608)
T ss_pred HHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH
Confidence 11 13579999999999988988898999999999998743
No 179
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=6.2e-11 Score=112.39 Aligned_cols=144 Identities=18% Similarity=0.279 Sum_probs=100.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHhhhhhhhhHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~p------------------------fi~is~se~~~~~vG~~~~~vr~lf~ 317 (500)
+.|..+||+||+|+|||++|++++.++... +..+.... . ..+.+.++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHH
Confidence 456689999999999999999999986432 22221110 0 112345666666
Q ss_pred HHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcc
Q 010809 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (500)
Q Consensus 318 ~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfd 393 (500)
.+.. ....||+|||+|.+. ....+.|+..++. ++...++|.+|+.++.+.+++++ |+.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~--------------~~~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~s--r~~ 148 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN--------------EAAANALLKTLEE--PPPNTLFILITPSPEKLLPTIRS--RCQ 148 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC--------------HHHHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHh--hcE
Confidence 6643 345799999999982 2345678888875 33456677777777899999998 884
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 010809 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G 434 (500)
.+.+++|+.++..++++.+ +++ +..++.++..+.|
T Consensus 149 -~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred -EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999998888876 233 3346677777665
No 180
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.7e-10 Score=118.52 Aligned_cols=184 Identities=15% Similarity=0.226 Sum_probs=126.8
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC-----------------
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP----------------- 291 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p----------------- 291 (500)
.|++|+|++++++.+.+.+..- +.|.+.||+||+|+||+++|+++|..+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 5899999999999999888643 345589999999999999999999875221
Q ss_pred -EEEEechh------hHHhh---hh--------hhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChH
Q 010809 292 -FFSISGSE------FVEMF---VG--------VGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDE 349 (500)
Q Consensus 292 -fi~is~se------~~~~~---vG--------~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e 349 (500)
++.+.... ....+ .| ...+.+|++.+.+.. ....|++||++|.+ +
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m-----------~-- 137 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM-----------N-- 137 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc-----------C--
Confidence 12222110 00000 00 112356666655532 34579999999998 2
Q ss_pred HHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHH
Q 010809 350 REQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIA 429 (500)
Q Consensus 350 ~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la 429 (500)
....|.||+.++... +.++|..|+.++.|-+.+++ |+. .+.++.|+.++..++|+........ +.+...++
T Consensus 138 -~~aaNaLLK~LEEPp---~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~~--~~~~~~l~ 208 (314)
T PRK07399 138 -EAAANALLKTLEEPG---NGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEIL--NINFPELL 208 (314)
T ss_pred -HHHHHHHHHHHhCCC---CCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhccccc--hhHHHHHH
Confidence 345677888887533 44677788889999999999 884 8999999999988888865432111 22346778
Q ss_pred HhCCCCcHHHHHHHHHH
Q 010809 430 MRTPGFSGADLANLLNE 446 (500)
Q Consensus 430 ~~t~G~sgadL~~lv~e 446 (500)
....| ++++..++++.
T Consensus 209 ~~a~G-s~~~al~~l~~ 224 (314)
T PRK07399 209 ALAQG-SPGAAIANIEQ 224 (314)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 88888 77777666653
No 181
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=9e-11 Score=130.04 Aligned_cols=256 Identities=13% Similarity=0.155 Sum_probs=145.1
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE-E
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-I 295 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~-i 295 (500)
....|.++..+.+++|++|.++..++++.++.....+ ....+.++|+||||+|||++++.+|++++..+.. .
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~ 142 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS 142 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh
Confidence 3457888999999999999999999888877654322 1222358999999999999999999988765433 1
Q ss_pred e---chhhH----------Hhh--hhhhhhHHHHHHHHHHh----------CCCeEEEEcCcchhhhccCCCCCCCChHH
Q 010809 296 S---GSEFV----------EMF--VGVGASRVRDLFKKAKE----------NAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (500)
Q Consensus 296 s---~se~~----------~~~--vG~~~~~vr~lf~~a~~----------~~p~IIfIDEID~l~~~r~~~~~~~~~e~ 350 (500)
+ +.... ..+ .....+.++.++..+.. ....||||||++.+... .
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----------~ 211 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----------D 211 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----------h
Confidence 1 11000 000 01122344555555431 24569999999987421 1
Q ss_pred HHHHHHHHH-HhcCCCCCCCeEEEEeeC-CCC--------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh
Q 010809 351 EQTLNQLLT-EMDGFEGNTGIIVIAATN-RAD--------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 351 ~~~L~~LL~-emd~~~~~~~viVIaaTN-~~~--------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l 414 (500)
.+.+..+|. .... ...+.+|++++ .+. .|.+++++.-|. ..|.|++.......+.|+..+
T Consensus 212 ~~~lq~lLr~~~~e---~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl 287 (637)
T TIGR00602 212 TRALHEILRWKYVS---IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIV 287 (637)
T ss_pred HHHHHHHHHHHhhc---CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHH
Confidence 123444444 2211 22333444333 111 133677743355 378999999999777666665
Q ss_pred cCCC--C------CccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH-------cCCCCcCHHHHHHHHHHHHcCc--CC
Q 010809 415 SNKK--F------DADVSLDVIAMRTPGFSGADLANLLNEAAILAGR-------RGKAAISSKEIDDSIDRIVAGM--EG 477 (500)
Q Consensus 415 ~~~~--l------~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r-------~~~~~It~~d~~~Ai~~v~~g~--~~ 477 (500)
.... . .....+..++....| |++.+++.--..+.+ .+...++..++..+..+...-. ++
T Consensus 288 ~~E~~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~ 363 (637)
T TIGR00602 288 TIEAKKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNEN 363 (637)
T ss_pred HhhhhccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhH
Confidence 4321 1 112346667766655 787777765554332 2334566655555544321100 00
Q ss_pred CC--CCChhhHHHHHhhhccccc
Q 010809 478 TV--MTDGKSKSLVAYHEVGHAI 498 (500)
Q Consensus 478 ~~--~~~~~ek~~~a~hE~gha~ 498 (500)
.. .+...+..+..+|-.|-.+
T Consensus 364 ~~l~~~~~rd~sl~lfhalgkil 386 (637)
T TIGR00602 364 QEIQALGGKDVSLFLFRALGKIL 386 (637)
T ss_pred HHHHhhccccchhHHHHHhChhh
Confidence 00 1223345566777777544
No 182
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.26 E-value=5.7e-11 Score=103.33 Aligned_cols=126 Identities=34% Similarity=0.510 Sum_probs=82.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechhhHHhh--------------hhhhhhHHHHHHHHHHhCCCeE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEFVEMF--------------VGVGASRVRDLFKKAKENAPCI 326 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~p---fi~is~se~~~~~--------------vG~~~~~vr~lf~~a~~~~p~I 326 (500)
+..++|+||||||||++++.+|..+..+ +++++++...... ........+.+++.++...+++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3479999999999999999999998775 8888887554321 1234456778888888777899
Q ss_pred EEEcCcchhhhccCCCCCCCChHHHHHHHHH--HHHhcCCCCCCCeEEEEeeCC-CCCCchhhcCCCCcceEEEecCC
Q 010809 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQL--LTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVTVDVP 401 (500)
Q Consensus 327 IfIDEID~l~~~r~~~~~~~~~e~~~~L~~L--L~emd~~~~~~~viVIaaTN~-~~~Ld~aLlrpgRfdr~I~v~~P 401 (500)
|+|||++.+.... ........ ..............+|+++|. ....+..+.+ |++.++.+..+
T Consensus 82 iiiDei~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAE----------QEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHH----------HHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhh--ccceEEEecCC
Confidence 9999999984332 11111100 000001122456788888886 3334444554 88888887655
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=99.22 E-value=2.8e-10 Score=129.27 Aligned_cols=169 Identities=20% Similarity=0.218 Sum_probs=124.1
Q ss_pred EEEEc--CCCChHHHHHHHHHHhc-----CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCC------CeEEEEcCcc
Q 010809 267 VLLVG--PPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENA------PCIVFVDEID 333 (500)
Q Consensus 267 vLL~G--ppGTGKT~LAralA~e~-----~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~------p~IIfIDEID 333 (500)
-+..| |++.|||++|+++|+++ +.+++.+++++.. +.+.+|++...+.... ..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~r------gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDER------GINVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcc------cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 46668 99999999999999997 5689999999843 2335666665543222 3699999999
Q ss_pred hhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHH
Q 010809 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (500)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~ 413 (500)
.+ +. ...+.|+..|+. ++..+.+|++||.++.+.+++++ |+ ..+.|++|+.++....|+..
T Consensus 641 ~L-----------t~---~AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 641 AL-----------TQ---DAQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred cC-----------CH---HHHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 99 22 345667777764 34568899999999999999999 88 48999999999888888877
Q ss_pred hcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 010809 414 GSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 414 l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~ 466 (500)
+.+.++. ++..+..++..+.| +.+...++++.++... ..|+.+++..
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~~~~-----~~It~~~V~~ 749 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAALD-----DKITDENVFL 749 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc-----CCCCHHHHHH
Confidence 6654443 34468889999998 7777777777655321 3466555443
No 184
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.22 E-value=4.5e-10 Score=111.65 Aligned_cols=131 Identities=24% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-------------CCCCchhhcCC
Q 010809 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-------------ADILDSALLRP 389 (500)
Q Consensus 323 ~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-------------~~~Ld~aLlrp 389 (500)
-|.++||||++.+ +-|.-..|+.-|. ++-.-+||.+||+ |.-+++.|+.
T Consensus 296 vPGVLFIDEVhML-----------DiEcFTyL~kalE------S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllD- 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHML-----------DIECFTYLHKALE------SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLD- 357 (456)
T ss_pred cCcceEeeehhhh-----------hhHHHHHHHHHhc------CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhh-
Confidence 3889999999988 3333334444333 2333477778875 4456677776
Q ss_pred CCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 390 GRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 390 gRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
|+ ..|..-+++.++-++|++.+.+-.++.-+ ..+..++.....-|-+-..+++.-|...|...|++.|..+|++++.
T Consensus 358 -Rl-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 358 -RL-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred -he-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 66 36666778888899999988876655432 2356666655444666666788888899999999999999999988
Q ss_pred HHHHc
Q 010809 469 DRIVA 473 (500)
Q Consensus 469 ~~v~~ 473 (500)
+-.+.
T Consensus 436 ~Lf~D 440 (456)
T KOG1942|consen 436 ELFLD 440 (456)
T ss_pred HHHHh
Confidence 76543
No 185
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.21 E-value=4.6e-12 Score=113.90 Aligned_cols=113 Identities=35% Similarity=0.407 Sum_probs=71.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH--hhhhhhh------hHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--MFVGVGA------SRVRDLFKKAKENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~--~~vG~~~------~~vr~lf~~a~~~~p~IIfIDEID~l~~ 337 (500)
+|+|+||||||||++|+.+|..++.+++.++++...+ .+.|.-. ......+..+.. .+++++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~-~~~il~lDEin~a-- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR-KGGILVLDEINRA-- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH-EEEEEEESSCGG---
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc-ceeEEEECCcccC--
Confidence 5899999999999999999999999999999876543 1222100 000000001111 4689999999987
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCC-------C-CCC------CeEEEEeeCCCC----CCchhhcCCCCc
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNT------GIIVIAATNRAD----ILDSALLRPGRF 392 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~-------~-~~~------~viVIaaTN~~~----~Ld~aLlrpgRf 392 (500)
+.+....++.++..-.-. . ... ++.+|+|+|..+ .+++++++ ||
T Consensus 78 ---------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 78 ---------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp ----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ---------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 344555555555432110 0 111 489999999988 89999999 87
No 186
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.21 E-value=7.7e-11 Score=125.98 Aligned_cols=206 Identities=22% Similarity=0.345 Sum_probs=130.3
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v 305 (500)
.+.+++|.+...+.+.+.+..+... ..+++|+|++||||+++|+++.... +.||+.++|..+.+..+
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPS----------DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCC----------CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4667899888888877766654322 2369999999999999999997654 57999999987644322
Q ss_pred hh-----------h-hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----C
Q 010809 306 GV-----------G-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----N 367 (500)
Q Consensus 306 G~-----------~-~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~ 367 (500)
.. + .......++.+ ...+|||||||.+ +.+.+..|.+++.+-. .... +
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~ 272 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYA---HGGTLFLDEIGDL-----------PLNLQAKLLRFLQERVIERLGGREEIP 272 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhhCeEEeCCCCceee
Confidence 11 0 01111123323 3458999999999 4555666666665421 0011 1
Q ss_pred CCeEEEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHh----cC-----CCCCccccHHH
Q 010809 368 TGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SN-----KKFDADVSLDV 427 (500)
Q Consensus 368 ~~viVIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l----~~-----~~l~~dvdl~~ 427 (500)
.++.+|++|+.. ..+.+.|.. |+. .+.+..|+..+|.+ +++.++ .. ..++++.--..
T Consensus 273 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 349 (445)
T TIGR02915 273 VDVRIVCATNQDLKRMIAEGTFREDLFY--RIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRAL 349 (445)
T ss_pred eceEEEEecCCCHHHHHHcCCccHHHHH--Hhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 257888888764 234444544 553 57888899988876 222222 21 12333332333
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
....|+| +.++|+++++.|+..+ ....|+.+++.
T Consensus 350 ~~~~wpg-NvreL~~~i~~a~~~~---~~~~i~~~~l~ 383 (445)
T TIGR02915 350 EAHAWPG-NVRELENKVKRAVIMA---EGNQITAEDLG 383 (445)
T ss_pred HhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHcC
Confidence 4556898 9999999999998765 33567777764
No 187
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.20 E-value=1.2e-09 Score=106.30 Aligned_cols=194 Identities=22% Similarity=0.316 Sum_probs=133.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
...++.+++++|.+.+++.|.+....+-.. .+.++|||+|..|||||+|+||+-++. +...+.|+-+++
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G--------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEG--------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcC--------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 445689999999999999998876654322 234589999999999999999997765 667888888776
Q ss_pred HHhhhhhhhhHHHHHHHHHHhC-CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC--CCCCCeEEEEeeC
Q 010809 301 VEMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF--EGNTGIIVIAATN 377 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~-~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~--~~~~~viVIaaTN 377 (500)
.. +..+++..+.. ..-|||.|++-- ++.+.....|-..+||- ..+.+|+|.||+|
T Consensus 125 ~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-------------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 125 AT---------LPDLVELLRARPEKFILFCDDLSF-------------EEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred hh---------HHHHHHHHhcCCceEEEEecCCCC-------------CCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 64 34566666543 346999999721 22223344455555553 2356899999999
Q ss_pred CCCCCchh--------------------hcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc-cHH----HHHHhC
Q 010809 378 RADILDSA--------------------LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV-SLD----VIAMRT 432 (500)
Q Consensus 378 ~~~~Ld~a--------------------LlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv-dl~----~la~~t 432 (500)
+...+++. +--+.||...+.+.+++.++-..|+..+++...++-+. .++ .-|..-
T Consensus 183 RRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~r 262 (287)
T COG2607 183 RRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTR 262 (287)
T ss_pred CcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 85544321 11234999999999999999999999999887766421 122 223334
Q ss_pred CCCcHHHHHHHHHHH
Q 010809 433 PGFSGADLANLLNEA 447 (500)
Q Consensus 433 ~G~sgadL~~lv~eA 447 (500)
.|-||+-..+.++..
T Consensus 263 g~RSGR~A~QF~~~~ 277 (287)
T COG2607 263 GGRSGRVAWQFIRDL 277 (287)
T ss_pred CCCccHhHHHHHHHH
Confidence 455666655555543
No 188
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.9e-10 Score=117.40 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=106.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC------------------------CEEEEechhhHHhhhhhhhhHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------------------PFFSISGSEFVEMFVGVGASRVRDLF 316 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~------------------------pfi~is~se~~~~~vG~~~~~vr~lf 316 (500)
.+.|.++||+||+|+|||++|+++|..+.+ .++.+...+- . -..+.+.+|++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHH
Confidence 456778999999999999999999997643 1222221100 0 012345677777
Q ss_pred HHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCc
Q 010809 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (500)
Q Consensus 317 ~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRf 392 (500)
+.+.. ....|++|||+|.+ .....|.||+.+++ ++.++++|.+|+.++.+.+.+++ |+
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m--------------~~~aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~S--Rc 157 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAM--------------NRNAANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKS--RC 157 (328)
T ss_pred HHHhhccccCCCeEEEECChhhC--------------CHHHHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHh--hc
Confidence 66643 34569999999999 23567888888884 45678999999999999999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHH
Q 010809 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGA 438 (500)
Q Consensus 393 dr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sga 438 (500)
. .+.+++|+.++-.+.|...... ..+.+...++....| ++.
T Consensus 158 ~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G-sp~ 198 (328)
T PRK05707 158 Q-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG-SPL 198 (328)
T ss_pred e-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC-CHH
Confidence 5 6999999999888887765321 223334455666666 443
No 189
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.19 E-value=4.5e-10 Score=124.42 Aligned_cols=193 Identities=22% Similarity=0.309 Sum_probs=122.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhHHhhhhhhhhHHHHHHHHH---------HhCCCeEEEEcCcch
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDA 334 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~~~~vG~~~~~vr~lf~~a---------~~~~p~IIfIDEID~ 334 (500)
+|||.|+||||||++|++++.... .||+.+..+...+..+|.- .+...+... .+....+||||||+.
T Consensus 18 ~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 18 GVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred eEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 799999999999999999998764 4798887643333333321 111101000 011225999999999
Q ss_pred hhhccCCCCCCCChHHHHHHHHHHHHhc------CCC--CCCCeEEEEeeCCCC---CCchhhcCCCCcceEEEec-CCC
Q 010809 335 VGRQRGTGIGGGNDEREQTLNQLLTEMD------GFE--GNTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVD-VPD 402 (500)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~emd------~~~--~~~~viVIaaTN~~~---~Ld~aLlrpgRfdr~I~v~-~Pd 402 (500)
+ ....+..|.+.+.+-. +.. .+..+.||+++|..+ .+.++|+. ||+.++.+. .|+
T Consensus 96 l-----------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~ 162 (589)
T TIGR02031 96 L-----------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVAS 162 (589)
T ss_pred C-----------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCC
Confidence 8 3334444444443211 111 124689999999865 78899999 999877665 557
Q ss_pred HHHHHHHHHHHhcC-------------------------CCCCccccHHHHHHh--CCCCc-HHHHHHHHHHHHHHHHHc
Q 010809 403 IRGRTEILKVHGSN-------------------------KKFDADVSLDVIAMR--TPGFS-GADLANLLNEAAILAGRR 454 (500)
Q Consensus 403 ~~eR~~IL~~~l~~-------------------------~~l~~dvdl~~la~~--t~G~s-gadL~~lv~eAa~~A~r~ 454 (500)
.++|.+|++..... +.++++ .+..++.. .-|.+ .+--..+++.|..+|..+
T Consensus 163 ~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~-~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~ 241 (589)
T TIGR02031 163 QDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAE-QVKELVLTAASLGISGHRADLFAVRAAKAHAALH 241 (589)
T ss_pred HHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHH-HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh
Confidence 78888988765421 111111 12222221 12232 444557888888999999
Q ss_pred CCCCcCHHHHHHHHHHHHcC
Q 010809 455 GKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 455 ~~~~It~~d~~~Ai~~v~~g 474 (500)
++..|+.+|++.|+.-++..
T Consensus 242 gr~~V~~~Dv~~a~~lvl~h 261 (589)
T TIGR02031 242 GRTEVTEEDLKLAVELVLLP 261 (589)
T ss_pred CCCCCCHHHHHHHHHHHhhh
Confidence 99999999999999987644
No 190
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=2.8e-10 Score=120.84 Aligned_cols=141 Identities=24% Similarity=0.436 Sum_probs=88.9
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----C--EEEEe----ch
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----P--FFSIS----GS 298 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-----p--fi~is----~s 298 (500)
++++.+.++..+.+...+ .. .++++|+||||||||++|+++|..+.. + ++.++ ..
T Consensus 174 l~d~~i~e~~le~l~~~L---~~-----------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRL---TI-----------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHH---hc-----------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 667777766665554433 22 237999999999999999999987742 1 22222 23
Q ss_pred hhHHhh--hhhhhh----HHHHHHHHHHhC--CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh---------
Q 010809 299 EFVEMF--VGVGAS----RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM--------- 361 (500)
Q Consensus 299 e~~~~~--vG~~~~----~vr~lf~~a~~~--~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em--------- 361 (500)
+|++.+ .+.+-. .+.++...|+.. .|++||||||+.....+ .+..++..|
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k-------------iFGel~~lLE~~~rg~~~ 306 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK-------------VFGEVMMLMEHDKRGENW 306 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH-------------hhhhhhhhcccccccccc
Confidence 444333 112222 234455666543 57999999998863222 111111111
Q ss_pred -----------cCCCCCCCeEEEEeeCCCC----CCchhhcCCCCcceEEEecC
Q 010809 362 -----------DGFEGNTGIIVIAATNRAD----ILDSALLRPGRFDRQVTVDV 400 (500)
Q Consensus 362 -----------d~~~~~~~viVIaaTN~~~----~Ld~aLlrpgRfdr~I~v~~ 400 (500)
+.|..+.++.||||+|..+ .+|.|++| ||. .+++.+
T Consensus 307 ~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 307 SVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHh--hhh-eEEecC
Confidence 2355667899999999887 79999999 996 566654
No 191
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.17 E-value=1.8e-10 Score=123.98 Aligned_cols=209 Identities=22% Similarity=0.362 Sum_probs=133.7
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV 305 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v 305 (500)
.+.+++|.+...+++.+.+..+... ...++++|++|||||++|+++.... +.||+.++|..+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~----------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRS----------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhcc----------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999998888888777654332 2369999999999999999997764 57999999987643211
Q ss_pred -----hhh------hhH-HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CCC----C
Q 010809 306 -----GVG------ASR-VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----N 367 (500)
Q Consensus 306 -----G~~------~~~-vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~----~ 367 (500)
|.. +.. ....|+.+ ....|||||+|.+ ..+.+..|.+++.+-.- ... .
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 271 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLDEIGDM-----------PLDVQTRLLRVLADGQFYRVGGYAPVK 271 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEeccccC-----------CHHHHHHHHHHHhcCcEEeCCCCCeEE
Confidence 110 000 01122222 2458999999998 44455555555543210 001 1
Q ss_pred CCeEEEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhc----CC-----CCCccccHHH
Q 010809 368 TGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NK-----KFDADVSLDV 427 (500)
Q Consensus 368 ~~viVIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~----~~-----~l~~dvdl~~ 427 (500)
.++.+|++|+.. ..+.+.|.. |+. .+.+..|+.++|.+ ++..+++ .. .++++..-..
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 348 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFH--RLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAAL 348 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 257888888753 134456665 664 57788888887766 3333332 11 2334443444
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
....|+| |.++|+|+++.|+..+ ....|+.+|+...+
T Consensus 349 ~~~~wpg-Nv~eL~~~i~~~~~~~---~~~~i~~~~l~~~~ 385 (469)
T PRK10923 349 TRLAWPG-NVRQLENTCRWLTVMA---AGQEVLIQDLPGEL 385 (469)
T ss_pred HhCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHHCcHhh
Confidence 5667998 9999999999998766 34568888876444
No 192
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.17 E-value=4.5e-11 Score=114.83 Aligned_cols=142 Identities=28% Similarity=0.422 Sum_probs=69.1
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc--------------------
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------------------- 288 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------------------- 288 (500)
.|+||+|++++|..++-... | +.++||+||||||||++|+++..-+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48999999999998886654 1 2389999999999999999998732
Q ss_pred --------CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH
Q 010809 289 --------GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE 360 (500)
Q Consensus 289 --------~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e 360 (500)
..||....-+.-....+|.+..-.-..+..|. ..|||+||+-.+ ..++++.|+.-
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh---~GVLflDE~~ef--------------~~~vld~Lr~p 129 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAH---RGVLFLDELNEF--------------DRSVLDALRQP 129 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGT---TSEEEECETTTS---------------HHHHHHHHHH
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhc---CCEEEechhhhc--------------CHHHHHHHHHH
Confidence 12344333322222233333211112233332 359999999666 34566666666
Q ss_pred hcCC-----------CCCCCeEEEEeeCC-----------------------CCCCchhhcCCCCcceEEEecCCCH
Q 010809 361 MDGF-----------EGNTGIIVIAATNR-----------------------ADILDSALLRPGRFDRQVTVDVPDI 403 (500)
Q Consensus 361 md~~-----------~~~~~viVIaaTN~-----------------------~~~Ld~aLlrpgRfdr~I~v~~Pd~ 403 (500)
|+.- .-+.++++|+|+|. ...+...++. |||-.+.++..+.
T Consensus 130 le~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~ 204 (206)
T PF01078_consen 130 LEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSY 204 (206)
T ss_dssp HHHSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred HHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccc--ccccccccccccc
Confidence 6421 11235899999984 1134555666 7776666655544
No 193
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.17 E-value=9.6e-10 Score=113.31 Aligned_cols=66 Identities=45% Similarity=0.704 Sum_probs=52.5
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhH
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFV 301 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~ 301 (500)
..+.++|+.++++..--+++.++..+ -..+++||.||||||||.||-++|+++| +||..+++|++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 45689999999999988888887653 1245899999999999999999999996 899999998873
No 194
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=7.7e-11 Score=118.29 Aligned_cols=128 Identities=27% Similarity=0.448 Sum_probs=82.9
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhC-------CCCC-ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-------ARIP-KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE- 302 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G-------~~~p-~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~- 302 (500)
=|+|++.+|+.|.=.+-. .|.++. .... .++||.||+|||||+||+.+|+.+++||-..++..+.+
T Consensus 62 YVIGQe~AKKvLsVAVYN-----HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYN-----HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehh-----HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhc
Confidence 367888888766533321 122221 1122 27999999999999999999999999999999998876
Q ss_pred hhhhhhhhHH-HHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC
Q 010809 303 MFVGVGASRV-RDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (500)
Q Consensus 303 ~~vG~~~~~v-r~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~ 364 (500)
.|+|+..+++ ..++..| .+....||+|||||.+.++....+-.-+-..+.....||.-++|-
T Consensus 137 GYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 4777654433 3344333 223346999999999998765432111112233444566666653
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.1e-09 Score=113.13 Aligned_cols=149 Identities=15% Similarity=0.185 Sum_probs=107.6
Q ss_pred CcccccC-ChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------------
Q 010809 229 TFDDVAG-VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------- 291 (500)
Q Consensus 229 ~f~dv~G-~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------------- 291 (500)
.|++|.| ++.+++.+...+.. .+.|..+||+||+|+|||++|+++|+.+-++
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4788988 88888888877753 2456678999999999999999999876321
Q ss_pred --------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 292 --------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 292 --------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
+.++... .. ..+.+.+|++.+.+.. ....|++|||+|.+ + ....|.||+
T Consensus 72 ~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~-----------~---~~a~NaLLK 132 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM-----------T---ASAANSLLK 132 (329)
T ss_pred HhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh-----------C---HHHHHHHHH
Confidence 2222111 00 0123456666665532 23469999999998 2 346678888
Q ss_pred HhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHH
Q 010809 360 EMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (500)
Q Consensus 360 emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~ 412 (500)
.++. ++.++++|.+|+.++.+.+++++ |+ ..++++.|+.++..+.++.
T Consensus 133 ~LEE--Pp~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 133 FLEE--PSGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HhcC--CCCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 8884 45677888888888899999999 88 4899999999987777764
No 196
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.6e-10 Score=113.49 Aligned_cols=84 Identities=31% Similarity=0.443 Sum_probs=63.9
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEee----CCCCCCchhhcCCCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT----NRADILDSALLRPGR 391 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVIaaT----N~~~~Ld~aLlrpgR 391 (500)
..||||||||.++.+.+.+ +++-.++.....||-.++|.. ....+++||+. ..|..|-|.|.- |
T Consensus 251 ~GIvFIDEIDKIa~~~~~g--~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQG--R 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSG--GPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQG--R 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCC--CCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcC--C
Confidence 3599999999998776532 224456667777887777642 23468899886 357888888865 9
Q ss_pred cceEEEecCCCHHHHHHHHH
Q 010809 392 FDRQVTVDVPDIRGRTEILK 411 (500)
Q Consensus 392 fdr~I~v~~Pd~~eR~~IL~ 411 (500)
|.-++++...+.++..+||.
T Consensus 327 fPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 327 FPIRVELDALTKEDFERILT 346 (444)
T ss_pred CceEEEcccCCHHHHHHHHc
Confidence 99999999999998888875
No 197
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.12 E-value=8e-10 Score=118.41 Aligned_cols=209 Identities=24% Similarity=0.347 Sum_probs=129.4
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhh-
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF- 304 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~- 304 (500)
.+.+++|.+....++.+.+..+.... ..++++|++||||+++|+++... .+.||+.++|..+.+..
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~----------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQ----------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCC----------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 45678888888777776665543322 27999999999999999999664 46799999998764432
Q ss_pred ----hhhhh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----C
Q 010809 305 ----VGVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----N 367 (500)
Q Consensus 305 ----vG~~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~ 367 (500)
.|... ......+..+ ...+|||||||.+ +...+..+.+++..-. .... +
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld~i~~l-----------~~~~q~~L~~~l~~~~~~~~~~~~~~~ 276 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLDEIGEM-----------PLVLQAKLLRILQEREFERIGGHQTIK 276 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEechhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceee
Confidence 11100 0001123322 2358999999999 4445555555554321 0111 1
Q ss_pred CCeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHHHH----HHHhcC---------CCCCccccHHH
Q 010809 368 TGIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTEIL----KVHGSN---------KKFDADVSLDV 427 (500)
Q Consensus 368 ~~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL----~~~l~~---------~~l~~dvdl~~ 427 (500)
.++.+|++||..- .+.+.+.. |+. .+.+..|+..+|.+-+ ..++.. ..++++.--..
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 353 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLL 353 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 3578999998631 23333333 342 5788889998887622 222211 12333333334
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 428 IAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 428 la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
....|+| +.++|+++++.|...+ ....|+.+|+...+
T Consensus 354 ~~~~wpg-Nv~eL~~~~~~~~~~~---~~~~i~~~~l~~~~ 390 (457)
T PRK11361 354 TAWSWPG-NIRELSNVIERAVVMN---SGPIIFSEDLPPQI 390 (457)
T ss_pred HcCCCCC-cHHHHHHHHHHHHHhC---CCCcccHHHChHhh
Confidence 4556888 9999999999988654 44568888886544
No 198
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.4e-09 Score=115.23 Aligned_cols=141 Identities=26% Similarity=0.403 Sum_probs=102.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEE-echhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGI 343 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~i-s~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~ 343 (500)
..+||+||||+|||.||..+|...+.||+.+ +..+.+..--...-..++..|+.|.+..-+||++|+|+.|..--
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v---- 614 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV---- 614 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc----
Confidence 4799999999999999999999999999976 44444433222233568899999999888999999999986543
Q ss_pred CCCChHHHHHHHHHHHHhcCCCCCC-CeEEEEeeCCCCCCch-hhcCCCCcceEEEecCCCH-HHHHHHHH
Q 010809 344 GGGNDEREQTLNQLLTEMDGFEGNT-GIIVIAATNRADILDS-ALLRPGRFDRQVTVDVPDI-RGRTEILK 411 (500)
Q Consensus 344 ~~~~~e~~~~L~~LL~emd~~~~~~-~viVIaaTN~~~~Ld~-aLlrpgRfdr~I~v~~Pd~-~eR~~IL~ 411 (500)
.-|....+.++..|+..+....+.. +.+|++||.+.+.|.+ .++. .|+..+.+|.... ++..+++.
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCccCchHHHHHHHH
Confidence 2356667777777888777655543 5777788877665533 4455 8998888876654 44444444
No 199
>PRK08116 hypothetical protein; Validated
Probab=99.09 E-value=1.3e-09 Score=109.65 Aligned_cols=124 Identities=22% Similarity=0.342 Sum_probs=79.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh----hhhHHHHHHHHHHhCCCeEEEEcCcchhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVG 336 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~----~~~~vr~lf~~a~~~~p~IIfIDEID~l~ 336 (500)
+.+++|+|+||||||+||.++|+++ +.++++++.+++...+... ......++++... ...+|+|||++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e- 190 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAE- 190 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCC-
Confidence 3479999999999999999999975 7899999999887654321 1122234444443 2359999999543
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC-CC----CchhhcCCCCc---ceEEEecCCCHH
Q 010809 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA-DI----LDSALLRPGRF---DRQVTVDVPDIR 404 (500)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~-~~----Ld~aLlrpgRf---dr~I~v~~Pd~~ 404 (500)
...+.....+.+++...- ..+..+|.|||.+ +. ++..+.+ |+ ...+.++-||.+
T Consensus 191 --------~~t~~~~~~l~~iin~r~----~~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e~~~~v~~~g~d~R 252 (268)
T PRK08116 191 --------RDTEWAREKVYNIIDSRY----RKGLPTIVTTNLSLEELKNQYGKRIYD--RILEMCTPVENEGKSYR 252 (268)
T ss_pred --------CCCHHHHHHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHhHHHHH--HHHHcCEEEEeeCcChh
Confidence 123445555666666432 2234577778763 33 4556666 63 224666666653
No 200
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.09 E-value=6.1e-10 Score=104.39 Aligned_cols=123 Identities=28% Similarity=0.403 Sum_probs=81.5
Q ss_pred ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh-----h
Q 010809 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM-----F 304 (500)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~-----~ 304 (500)
++|.+.+.+++.+.+..+... +.+|||+|++||||+++|+++-... +.||+.++|+.+.+. .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCC----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 578888888888877764332 3479999999999999999997754 679999999876543 2
Q ss_pred hhhh-------hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CCC----CCCeE
Q 010809 305 VGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----NTGII 371 (500)
Q Consensus 305 vG~~-------~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~----~~~vi 371 (500)
.|.. ......+|++|... +||||||+.+ ..+.+..|.+++..-.- ... ..++.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~G---tL~Ld~I~~L-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 136 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGG---TLFLDEIEDL-----------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVR 136 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTS---EEEEETGGGS------------HHHHHHHHHHHHHSEEECCTSSSEEE--EE
T ss_pred hccccccccccccccCCceeeccce---EEeecchhhh-----------HHHHHHHHHHHHhhchhccccccccccccce
Confidence 3321 11223678877655 8999999999 55566666667664321 111 23689
Q ss_pred EEEeeCCC
Q 010809 372 VIAATNRA 379 (500)
Q Consensus 372 VIaaTN~~ 379 (500)
+|++|+.+
T Consensus 137 iI~st~~~ 144 (168)
T PF00158_consen 137 IIASTSKD 144 (168)
T ss_dssp EEEEESS-
T ss_pred EEeecCcC
Confidence 99999863
No 201
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.09 E-value=1.7e-09 Score=117.26 Aligned_cols=212 Identities=23% Similarity=0.302 Sum_probs=127.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC------------------
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------------------ 289 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~------------------ 289 (500)
.+|.++.|...+++.+.-.+ ....+++|+||||+|||++++.+++...
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 47899999887776533111 1224799999999999999999987431
Q ss_pred ----------CCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 290 ----------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 290 ----------~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
.||....-+--....+|.+...-...+..|.. .+|||||++.+ +....+.|.+.+.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~-----------~~~~~~~L~~~LE 319 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEF-----------ERRTLDALREPIE 319 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhC-----------CHHHHHHHHHHHH
Confidence 11111111111111233332222345555544 49999999887 3334444444443
Q ss_pred Hhc----C----CCCCCCeEEEEeeCCCC---------------------CCchhhcCCCCcceEEEecCCCHHHH----
Q 010809 360 EMD----G----FEGNTGIIVIAATNRAD---------------------ILDSALLRPGRFDRQVTVDVPDIRGR---- 406 (500)
Q Consensus 360 emd----~----~~~~~~viVIaaTN~~~---------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR---- 406 (500)
+-. . ...+.++.+|+|+|... .+..+++. |||.++.++.|+.++.
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~ 397 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTV 397 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhccc
Confidence 211 0 01134689999999742 36678888 9999999998853311
Q ss_pred ------HHHH----HHH----hc----CCCCCc---------cccHH---HHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 407 ------TEIL----KVH----GS----NKKFDA---------DVSLD---VIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 407 ------~~IL----~~~----l~----~~~l~~---------dvdl~---~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
.++- +.. .+ +..+.. ..... .-+...-|.|.+....+++-|-..|..+++
T Consensus 398 ~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 398 VPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred CCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence 1111 100 00 000110 00011 112234468999999999999999999999
Q ss_pred CCcCHHHHHHHHH
Q 010809 457 AAISSKEIDDSID 469 (500)
Q Consensus 457 ~~It~~d~~~Ai~ 469 (500)
+.|+.+|+.+|+.
T Consensus 478 ~~V~~~hv~eAl~ 490 (506)
T PRK09862 478 DIITRQHLQEAVS 490 (506)
T ss_pred CCCCHHHHHHHHH
Confidence 9999999999987
No 202
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.09 E-value=2.5e-10 Score=107.27 Aligned_cols=110 Identities=35% Similarity=0.425 Sum_probs=71.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEechhhHHhhhhhhhhHHHHHHHHH----HhCCCeEEEEcCcchhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~----pfi~is~se~~~~~vG~~~~~vr~lf~~a----~~~~p~IIfIDEID~l~~ 337 (500)
+++|.||+|+|||.+|+++|..+.. +++.++++++.+. +.....+..++..+ ......||||||||.+..
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 6899999999999999999999996 9999999999871 11111122222111 011113999999999976
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCC---------CCCCCeEEEEeeCCCC
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGF---------EGNTGIIVIAATNRAD 380 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~---------~~~~~viVIaaTN~~~ 380 (500)
.. ..+.+-....+.+.||..+|+- -...++++|+|+|--.
T Consensus 83 ~~---~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 83 SN---SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TT---TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cc---cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 51 1222334456666777766531 1124699999999644
No 203
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.09 E-value=1.2e-09 Score=113.81 Aligned_cols=217 Identities=25% Similarity=0.390 Sum_probs=133.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEE-----
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFS----- 294 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~----- 294 (500)
.+.|.-++|++..|..|.-. .-+|+ -.|+||.|+.|||||+++|++|.-+ |+||-.
T Consensus 13 ~~pf~aivGqd~lk~aL~l~---av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLN---AVDPQ---------IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhh---hcccc---------cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 46799999999999866532 22232 2389999999999999999999855 333220
Q ss_pred -Eech-------------------hhHHhhhhhhhhHH------HHHHHHH---------HhCCCeEEEEcCcchhhhcc
Q 010809 295 -ISGS-------------------EFVEMFVGVGASRV------RDLFKKA---------KENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 295 -is~s-------------------e~~~~~vG~~~~~v------r~lf~~a---------~~~~p~IIfIDEID~l~~~r 339 (500)
-.|. .|++..++..+.++ ....+.- .+....|++|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 0111 12222334444422 1111110 1112359999999887
Q ss_pred CCCCCCCChHHHHHHHHHHHHhc---------CC--CCCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCC-CHHHH
Q 010809 340 GTGIGGGNDEREQTLNQLLTEMD---------GF--EGNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRGR 406 (500)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emd---------~~--~~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~P-d~~eR 406 (500)
++ +..+.||..+. |+ ..+.++++|+|.|..+ .|-+.|+. ||...+.+..| +.++|
T Consensus 157 -------~d---~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~r 224 (423)
T COG1239 157 -------DD---HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEER 224 (423)
T ss_pred -------cH---HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHH
Confidence 33 34455554432 22 2344799999999855 78899999 99999988766 78889
Q ss_pred HHHHHHHhcCCCCCcccc-------------------------------HHHHHHh-----CCCCcHHHHHHHHHHHHHH
Q 010809 407 TEILKVHGSNKKFDADVS-------------------------------LDVIAMR-----TPGFSGADLANLLNEAAIL 450 (500)
Q Consensus 407 ~~IL~~~l~~~~l~~dvd-------------------------------l~~la~~-----t~G~sgadL~~lv~eAa~~ 450 (500)
.+|.+..+.- ...++.- ...++.. ..| .-+| .-+++.|..+
T Consensus 225 v~Ii~r~~~f-~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g-~rad-i~~~r~a~a~ 301 (423)
T COG1239 225 VEIIRRRLAF-EAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDG-HRAD-IVVVRAAKAL 301 (423)
T ss_pred HHHHHHHHHh-hcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCC-Cchh-hHHHHHHHHH
Confidence 9988765542 1111111 1111111 112 1122 2556667778
Q ss_pred HHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 451 AGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 451 A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
|+.+|+..|+.+|+++|..-.+..
T Consensus 302 aa~~Gr~~v~~~Di~~a~~l~l~h 325 (423)
T COG1239 302 AALRGRTEVEEEDIREAAELALLH 325 (423)
T ss_pred HHhcCceeeehhhHHHHHhhhhhh
Confidence 888999999999999999865433
No 204
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.1e-10 Score=121.04 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=124.4
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----------------
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG----------------- 289 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~----------------- 289 (500)
..+|.||.|++.+|+.+.....- .+|+|++||||||||++|+.+.+-+-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAG--------------gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~ 240 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAG--------------GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLA 240 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhc--------------CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhc
Confidence 45899999999999988876542 23799999999999999999866320
Q ss_pred ------------CCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHH
Q 010809 290 ------------VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (500)
Q Consensus 290 ------------~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (500)
.||..-.-+.-....+|.+..---.-...| ...|||+||+-.. ..++|+.|
T Consensus 241 g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLA---H~GVLFLDElpef--------------~~~iLe~L 303 (490)
T COG0606 241 GDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLA---HNGVLFLDELPEF--------------KRSILEAL 303 (490)
T ss_pred ccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeee---cCCEEEeeccchh--------------hHHHHHHH
Confidence 112111111111112222210000001111 2359999999444 44788888
Q ss_pred HHHhcCCC-----------CCCCeEEEEeeCCC-----------------------CCCchhhcCCCCcceEEEecCCCH
Q 010809 358 LTEMDGFE-----------GNTGIIVIAATNRA-----------------------DILDSALLRPGRFDRQVTVDVPDI 403 (500)
Q Consensus 358 L~emd~~~-----------~~~~viVIaaTN~~-----------------------~~Ld~aLlrpgRfdr~I~v~~Pd~ 403 (500)
.+-|+.-. -+.++.+|+++|.. ..|...+++ |+|..++++.++.
T Consensus 304 R~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~ 381 (490)
T COG0606 304 REPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSA 381 (490)
T ss_pred hCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCH
Confidence 87776311 12357888888841 134556667 9999999988764
Q ss_pred HHHH--------------HHHHHH------hcCCCCCc----------------cccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 404 RGRT--------------EILKVH------GSNKKFDA----------------DVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 404 ~eR~--------------~IL~~~------l~~~~l~~----------------dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
.++. .+.+.+ ..+..... +.++-..+-..-++|.+....+++-|
T Consensus 382 ~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKva 461 (490)
T COG0606 382 GELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVA 461 (490)
T ss_pred HHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4332 122111 11110011 11122223334457778888888888
Q ss_pred HHHHHHcCCCCcCHHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~ 469 (500)
-.+|-.++.+.|...|+.+|+.
T Consensus 462 rTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 462 RTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred hhhhcccCcchhhHHHHHHHHh
Confidence 8888888888888888888876
No 205
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.07 E-value=6.6e-10 Score=119.36 Aligned_cols=208 Identities=21% Similarity=0.342 Sum_probs=129.7
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhh-
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV- 305 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~v- 305 (500)
+.+++|.+....++.+.+..+... ...+++.|++||||+++|+++... .+.||+.++|..+.+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~----------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRS----------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCc----------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 346888888888877766654332 237999999999999999999765 367999999987643221
Q ss_pred ----hhhh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--CC----CCC
Q 010809 306 ----GVGA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--FE----GNT 368 (500)
Q Consensus 306 ----G~~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~----~~~ 368 (500)
|... ......|+ ....+.|||||||.+ +.+.+..|.+++.+-.. .. ...
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~---~a~~gtl~l~ei~~l-----------~~~~q~~ll~~l~~~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFE---QADGGTLFLDEIGDM-----------PLDAQTRLLRVLADGEFYRVGGRTPIKV 268 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEE---ECCCCeEEEEchhhC-----------CHHHHHHHHHHHhcCcEEECCCCceeee
Confidence 1100 00011122 223568999999999 44555566666653211 01 112
Q ss_pred CeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhc----CC-----CCCccccHHHH
Q 010809 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NK-----KFDADVSLDVI 428 (500)
Q Consensus 369 ~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~----~~-----~l~~dvdl~~l 428 (500)
++.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.++. .. .++++.--...
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~ 345 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFH--RLN-VIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLK 345 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHH--HhC-cceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHH
Confidence 577888887531 33344444 453 46777777776654 3333222 11 23333333444
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 429 a~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
...|+| |.++|+++++.|+..+ ....|+.+|+...+
T Consensus 346 ~~~wpg-NvreL~~~~~~~~~~~---~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 346 QLRWPG-NVRQLENLCRWLTVMA---SGDEVLVSDLPAEL 381 (463)
T ss_pred hCCCCC-hHHHHHHHHHHHHHhC---CCCcccHHhchHHH
Confidence 557898 9999999999999766 34568888887555
No 206
>PRK15115 response regulator GlrR; Provisional
Probab=99.06 E-value=9.4e-10 Score=117.61 Aligned_cols=206 Identities=23% Similarity=0.378 Sum_probs=124.0
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh-
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV- 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~- 307 (500)
.++|.+.....+.+.+..+... ...++++|++|||||++|+++.... +.||+.++|..+.+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~----------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~ 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS----------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESE 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC----------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHH
Confidence 4677766666555554443222 1269999999999999999997654 6799999998764432111
Q ss_pred ----h------h-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 010809 308 ----G------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (500)
Q Consensus 308 ----~------~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~~~v 370 (500)
. + .....+++.+ ...+|||||||.+ +.+.+..|..++..-. .... ..++
T Consensus 205 lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~l~~i~~l-----------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 205 LFGHARGAFTGAVSNREGLFQAA---EGGTLFLDEIGDM-----------PAPLQVKLLRVLQERKVRPLGSNRDIDIDV 270 (444)
T ss_pred hcCCCcCCCCCCccCCCCcEEEC---CCCEEEEEccccC-----------CHHHHHHHHHHHhhCCEEeCCCCceeeeeE
Confidence 0 0 0001122222 2458999999999 4455555555554321 1111 1257
Q ss_pred EEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhcC----C-----CCCccccHHHHHH
Q 010809 371 IVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN----K-----KFDADVSLDVIAM 430 (500)
Q Consensus 371 iVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~~----~-----~l~~dvdl~~la~ 430 (500)
.+|++|+..- .+.+.|.. |+. .+.+..|+..+|.+ +++.+++. . .++++.--.....
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~l~~--~l~-~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 271 RIISATHRDLPKAMARGEFREDLYY--RLN-VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred EEEEeCCCCHHHHHHcCCccHHHHH--hhc-eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8999888530 12222332 332 67888899999865 22333221 1 1344433344455
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.|+| +.++|+++++.|+..+ ....|+.+++...+
T Consensus 348 ~Wpg-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 381 (444)
T PRK15115 348 SWPG-NVRQLVNVIEQCVALT---SSPVISDALVEQAL 381 (444)
T ss_pred CCCC-hHHHHHHHHHHHHHhC---CCCccChhhhhhhh
Confidence 6798 9999999999988654 34568888876544
No 207
>PRK08181 transposase; Validated
Probab=99.06 E-value=3.5e-09 Score=106.43 Aligned_cols=124 Identities=21% Similarity=0.303 Sum_probs=80.1
Q ss_pred cCcccccCChHHHHHHHHHH-HHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh
Q 010809 228 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v-~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~ 303 (500)
+.|+...+.+.....-...+ +|+... .+++|+||||||||+||.+++.++ +..+++++..++.+.
T Consensus 80 fd~~~~~~~~~~~~~~L~~~~~~~~~~-----------~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAAGDSWLAKG-----------ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CCccCCCCCCHHHHHHHHHHHHHHhcC-----------ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 44555555554444333333 454432 389999999999999999998754 788999999998886
Q ss_pred hhhh-hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 304 FVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 304 ~vG~-~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
+... ........++... .+.+|+|||++.+. .++...+.+.+++....+ + + -+|.|||.
T Consensus 149 l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~---------~~~~~~~~Lf~lin~R~~---~-~-s~IiTSN~ 208 (269)
T PRK08181 149 LQVARRELQLESAIAKLD--KFDLLILDDLAYVT---------KDQAETSVLFELISARYE---R-R-SILITANQ 208 (269)
T ss_pred HHHHHhCCcHHHHHHHHh--cCCEEEEecccccc---------CCHHHHHHHHHHHHHHHh---C-C-CEEEEcCC
Confidence 5332 1123344555443 45699999998762 234455677777775432 1 1 36667775
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.05 E-value=2.6e-09 Score=110.75 Aligned_cols=83 Identities=22% Similarity=0.310 Sum_probs=62.6
Q ss_pred Ccc-cccCChHHHHHHHHHHHHhcChhhhhhhCCC-CCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEEec--
Q 010809 229 TFD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSISG-- 297 (500)
Q Consensus 229 ~f~-dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~-~p~gvLL~GppGTGKT~LAralA~e~~~-------pfi~is~-- 297 (500)
-|+ |+.|++++++++.+.+..... |.. ..+.++|+||||+|||++|+++|+.++. |++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~-------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~ 120 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQ-------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG 120 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence 366 899999998877665544321 222 2357899999999999999999999976 9999998
Q ss_pred --hhhHHhhhhhhhhHHHHHHHH
Q 010809 298 --SEFVEMFVGVGASRVRDLFKK 318 (500)
Q Consensus 298 --se~~~~~vG~~~~~vr~lf~~ 318 (500)
+.+.+.+++.....+|+.|.+
T Consensus 121 ~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 121 EESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCCCccCCcccCCHHHHHHHHH
Confidence 777777776666666665544
No 209
>PRK12377 putative replication protein; Provisional
Probab=98.99 E-value=6e-09 Score=103.60 Aligned_cols=100 Identities=20% Similarity=0.250 Sum_probs=68.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhhh--hhHHHHHHHHHHhCCCeEEEEcCcchhhhcc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVG--ASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~~--~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r 339 (500)
.+++|+||||||||+||.|+|+++ +..+++++..++.......- .....++++.. ....+|+|||++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~--- 176 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQR--- 176 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC---
Confidence 489999999999999999999876 78899999988887543211 11123344444 345799999997651
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
.++....++.+++..--. ...-+|.|||..
T Consensus 177 ------~s~~~~~~l~~ii~~R~~----~~~ptiitSNl~ 206 (248)
T PRK12377 177 ------ETKNEQVVLNQIIDRRTA----SMRSVGMLTNLN 206 (248)
T ss_pred ------CCHHHHHHHHHHHHHHHh----cCCCEEEEcCCC
Confidence 244566778888776431 223467778863
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.6e-08 Score=104.24 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=102.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHhhhhhhhhHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~p------------------------fi~is~se~~~~~vG~~~~~vr~lf~ 317 (500)
+.|.++||+||+|+||+++|+++|..+-+. |+.+...+ . ...+.+.+|++.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~--~~I~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--N--KDIGVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--C--CCCCHHHHHHHHH
Confidence 557789999999999999999999865321 22221110 0 0123456777766
Q ss_pred HHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcc
Q 010809 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (500)
Q Consensus 318 ~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfd 393 (500)
.+.. ....|++||++|.+ .....|.||+.++ +++.++++|.+|+.++.+.|.+++ |+.
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m--------------~~~AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~S--RC~ 159 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL--------------TEAAANALLKTLE--EPRPNTYFLLQADLSAALLPTIYS--RCQ 159 (325)
T ss_pred HHhhccccCCceEEEEechhhh--------------CHHHHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHh--hce
Confidence 6533 33469999999999 2456788899888 466788999999999999999999 885
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 010809 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G 434 (500)
.+.+++|+.++..+.|..... ..+......+..+.|
T Consensus 160 -~~~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 160 -TWLIHPPEEQQALDWLQAQSS----AEISEILTALRINYG 195 (325)
T ss_pred -EEeCCCCCHHHHHHHHHHHhc----cChHHHHHHHHHcCC
Confidence 789999999988777775431 112223444555555
No 211
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.7e-09 Score=108.82 Aligned_cols=134 Identities=24% Similarity=0.330 Sum_probs=97.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC-------------------------EEEEechhhH--------------
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------------------------FFSISGSEFV-------------- 301 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------------------------fi~is~se~~-------------- 301 (500)
.+.|.++||+||+|+||+++|+++|..+.+. ++.+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3778899999999999999999999866331 1112111000
Q ss_pred --Hh------h-hhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010809 302 --EM------F-VGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (500)
Q Consensus 302 --~~------~-vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~ 368 (500)
+. + -..+.+.+|++.+.+.. ....|++||++|.+ .....|.||+.++ +++.
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~ 161 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL--------------NVAAANALLKTLE--EPPP 161 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc--------------CHHHHHHHHHHhc--CCCc
Confidence 00 0 01123567777666532 33469999999999 2457788999988 5677
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVH 413 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~ 413 (500)
++++|.+|++++.|.|.+++ |+ ..+.+++|+.++..+.|...
T Consensus 162 ~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 162 GTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 89999999999999999999 99 58999999999888888754
No 212
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.1e-09 Score=106.61 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=104.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC------------------------CEEEEechhhHHhhhhhhhhHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV------------------------PFFSISGSEFVEMFVGVGASRVRDLF 316 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~------------------------pfi~is~se~~~~~vG~~~~~vr~lf 316 (500)
.+.|..+||+||+|+||+++|.++|..+-+ .++.+....- . ...+.+.+|++.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~--~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-K--SSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-c--ccCCHHHHHHHH
Confidence 456779999999999999999999986522 1122211100 0 012345667766
Q ss_pred HHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCc
Q 010809 317 KKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (500)
Q Consensus 317 ~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRf 392 (500)
+.+. .....|++||++|.+ ..+..|.||+.++ +++.+.++|..|+.++.|.|.+++ |+
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrS--RC 159 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALL--------------TDAAANALLKTLE--EPPENTWFFLACREPARLLATLRS--RC 159 (334)
T ss_pred HHHhhccccCCceEEEEcchHhh--------------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cc
Confidence 6553 234579999999999 2457788999988 467789999999999999999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHH
Q 010809 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGA 438 (500)
Q Consensus 393 dr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sga 438 (500)
. .+.+++|+.++..+.|... .+.+ ..+...++..+.| ++.
T Consensus 160 q-~~~~~~~~~~~~~~~L~~~---~~~~-~~~a~~~~~la~G-~~~ 199 (334)
T PRK07993 160 R-LHYLAPPPEQYALTWLSRE---VTMS-QDALLAALRLSAG-APG 199 (334)
T ss_pred c-cccCCCCCHHHHHHHHHHc---cCCC-HHHHHHHHHHcCC-CHH
Confidence 6 6899999988777766542 2222 2224456666666 443
No 213
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.96 E-value=3.8e-09 Score=98.36 Aligned_cols=133 Identities=21% Similarity=0.322 Sum_probs=88.4
Q ss_pred CChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------C
Q 010809 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------------------P 291 (500)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-----------------------p 291 (500)
|++++++.|.+.+..- +.|..+||+||+|+||+++|+++|..+-. .
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 6777777777776533 44558999999999999999999986522 2
Q ss_pred EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 292 FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 292 fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
++.++..+... ....+.+|++.+.+.. ....|++|||+|.+ .....|.||+.|+. ++
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------------~~~a~NaLLK~LEe--pp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------------TEEAQNALLKTLEE--PP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------------HHHHHHHHHHHHS--TT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------------hHHHHHHHHHHhcC--CC
Confidence 22222221100 1133566766666532 34579999999999 34567888888884 45
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecC
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~ 400 (500)
.++++|.+|+.++.+-+.+++ |+. .+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~S--Rc~-~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRS--RCQ-VIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHT--TSE-EEEE--
T ss_pred CCEEEEEEECChHHChHHHHh--hce-EEecCC
Confidence 678999999999999999999 884 566654
No 214
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.95 E-value=6e-09 Score=105.00 Aligned_cols=223 Identities=20% Similarity=0.193 Sum_probs=139.1
Q ss_pred ccccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 216 ~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
....-|++++++-++.|+++.++....+.++.+.-+.| +.|+|||||||||....+.|..+-.|.-
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lP------------h~L~YgPPGtGktsti~a~a~~ly~~~~-- 91 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLP------------HLLFYGPPGTGKTSTILANARDFYSPHP-- 91 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCC------------cccccCCCCCCCCCchhhhhhhhcCCCC--
Confidence 33445788899999999999999999888875433333 7999999999999999999998866511
Q ss_pred echhhHHhh----hhhhhhHH-HHHHHHHHh-------CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC
Q 010809 296 SGSEFVEMF----VGVGASRV-RDLFKKAKE-------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (500)
Q Consensus 296 s~se~~~~~----vG~~~~~v-r~lf~~a~~-------~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~ 363 (500)
..+-+.+.. .|.+.-+. -..|...+. ..+..+++||.|++.. .+.|+|-..++.
T Consensus 92 ~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~--------------~AQnALRRviek 157 (360)
T KOG0990|consen 92 TTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR--------------DAQNALRRVIEK 157 (360)
T ss_pred chhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH--------------HHHHHHHHHHHH
Confidence 111112211 11111111 234444442 2678999999999832 334445456665
Q ss_pred CCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHH
Q 010809 364 FEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLAN 442 (500)
Q Consensus 364 ~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~la~~t~G~sgadL~~ 442 (500)
+..+ +.++..+|.+..+.+++++ ||. .+.+.+-+...-...+..++..-......+ ...+++. +-.|++.
T Consensus 158 ~t~n--~rF~ii~n~~~ki~pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~----s~gDmr~ 228 (360)
T KOG0990|consen 158 YTAN--TRFATISNPPQKIHPAQQS--RCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRL----SVGDMRV 228 (360)
T ss_pred hccc--eEEEEeccChhhcCchhhc--ccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHH----hHHHHHH
Confidence 5444 5555678999999999998 886 455655666666666676665444332222 2234443 4447777
Q ss_pred HHHHHHHHHHHcC---------------CCCcCHHHHHHHHHHHHcCc
Q 010809 443 LLNEAAILAGRRG---------------KAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 443 lv~eAa~~A~r~~---------------~~~It~~d~~~Ai~~v~~g~ 475 (500)
++|.....+..-. ...+...|+++.++..+.+.
T Consensus 229 a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~ 276 (360)
T KOG0990|consen 229 ALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGE 276 (360)
T ss_pred HHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChhHHHHHHHHHhcCc
Confidence 7775544333321 12344557888887766554
No 215
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.94 E-value=1.9e-08 Score=114.25 Aligned_cols=130 Identities=22% Similarity=0.268 Sum_probs=77.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechhhHHhh-hhhhhhHH-HHHHHHHHhCCCeEEEEcCcch
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVEMF-VGVGASRV-RDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~se~~~~~-vG~~~~~v-r~lf~~a~~~~p~IIfIDEID~ 334 (500)
.-+|||+|+||||||.+|++++... |.++..+.+..+.... ...+.-.+ ...+..| ...+++|||+|.
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlA---dgGtL~IDEidk 568 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLA---NGGVCCIDELDK 568 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEc---CCCeEEecchhh
Confidence 3479999999999999999998754 2455555444432100 00011000 0011112 235999999999
Q ss_pred hhhccCCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEEEeeCCCC-------------CCchhhcCCCCcc
Q 010809 335 VGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVIAATNRAD-------------ILDSALLRPGRFD 393 (500)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~emd------~~--~~~~~viVIaaTN~~~-------------~Ld~aLlrpgRfd 393 (500)
+ ....+..|.+++.+=. |. .-+.++.||||+|+.. .|+++|++ |||
T Consensus 569 m-----------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS--RFD 635 (915)
T PTZ00111 569 C-----------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT--RFD 635 (915)
T ss_pred C-----------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh--hhc
Confidence 8 3334444544443211 11 1135689999999742 47899999 999
Q ss_pred eEE-EecCCCHHHHHHH
Q 010809 394 RQV-TVDVPDIRGRTEI 409 (500)
Q Consensus 394 r~I-~v~~Pd~~eR~~I 409 (500)
..+ .++.|+.+.-..|
T Consensus 636 LIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 636 LIYLVLDHIDQDTDQLI 652 (915)
T ss_pred EEEEecCCCChHHHHHH
Confidence 854 5567776654443
No 216
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.94 E-value=7.6e-09 Score=115.08 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=63.6
Q ss_pred CeEEEEeeCCC--CCCchhhcCCCCcc---eEEEecC--C-CHHHHHHHHHHHhcCCC---CCccccH---HHHHH---h
Q 010809 369 GIIVIAATNRA--DILDSALLRPGRFD---RQVTVDV--P-DIRGRTEILKVHGSNKK---FDADVSL---DVIAM---R 431 (500)
Q Consensus 369 ~viVIaaTN~~--~~Ld~aLlrpgRfd---r~I~v~~--P-d~~eR~~IL~~~l~~~~---l~~dvdl---~~la~---~ 431 (500)
++.||+++|+. ..+|++|+. ||. -.+.++. + +.+.+..+++...+... ..+..+. ..+.+ +
T Consensus 277 dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 277 DFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred eeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999874 467899988 875 3344431 2 24556666654332221 1112222 12211 1
Q ss_pred CCC------CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 432 TPG------FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 432 t~G------~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
..| +..++|.+++++|...|..++++.|+.+|+.+|+.+
T Consensus 355 ~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 355 RAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 122 346899999999999999999999999999988764
No 217
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2.4e-08 Score=102.66 Aligned_cols=150 Identities=19% Similarity=0.271 Sum_probs=100.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCC---------------------EEEEe--chhhHHh-hhhhhhhHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------------------FFSIS--GSEFVEM-FVGVGASRVRDLF 316 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------------------fi~is--~se~~~~-~vG~~~~~vr~lf 316 (500)
.+.|..+||+||+|+||+++|.++|..+-+. ++.+. .++-..+ ....+.+.+|++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 3567789999999999999999999865321 11121 0000000 0012245667777
Q ss_pred HHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCc
Q 010809 317 KKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (500)
Q Consensus 317 ~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRf 392 (500)
+.+... ...|++||++|.+ .....|.||+-+++ ++.++++|.+|+.++.|.|.+++ |+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m--------------~~~AaNaLLKtLEE--Pp~~~~fiL~~~~~~~lLpTIrS--RC 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI--------------NRAACNALLKTLEE--PSPGRYLWLISAQPARLPATIRS--RC 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh--------------CHHHHHHHHHHhhC--CCCCCeEEEEECChhhCchHHHh--hh
Confidence 665332 3469999999999 24567888888884 55678888889999999999999 99
Q ss_pred ceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 010809 393 DRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (500)
Q Consensus 393 dr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G 434 (500)
. .+.++.|+.++-.+.|... ..+ ..+...++....|
T Consensus 165 q-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G 200 (319)
T PRK08769 165 Q-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARG 200 (319)
T ss_pred e-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCC
Confidence 5 8899999998777776542 222 2223455666666
No 218
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.94 E-value=1.1e-08 Score=101.49 Aligned_cols=130 Identities=17% Similarity=0.271 Sum_probs=83.1
Q ss_pred CcCccccc-CChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 227 GVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 227 ~~~f~dv~-G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
..+|++.. +.++.+..+..+..+..+.. ....+++|+|+||||||+|+.++|.++ +..+++++..++..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a~~~~~~~~-------~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKARQYVEEFD-------GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred CCccccccCCCchHHHHHHHHHHHHHhhc-------cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 44677765 33343334444444443211 012389999999999999999999987 78999999999887
Q ss_pred hhhhh---hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 303 MFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 303 ~~vG~---~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
.+... .......+++... ..++|+|||++... ..+.....+.+++..-- .....+|.+||.
T Consensus 141 ~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~---------~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl 204 (244)
T PRK07952 141 AMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT---------ESRYEKVIINQIVDRRS----SSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC---------CCHHHHHHHHHHHHHHH----hCCCCEEEeCCC
Confidence 54332 1122334555543 45799999998762 24455567888877532 123457778886
No 219
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.93 E-value=2.7e-08 Score=108.76 Aligned_cols=226 Identities=15% Similarity=0.238 Sum_probs=141.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechhhH
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFV 301 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~is~se~~ 301 (500)
-+.+.+....++..+++..-..+ .. ...++++|-||||||.+++.+-.++ ..+++.|++-.+.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~---~~----g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~ 469 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQ---GL----GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLA 469 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCC---CC----ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeec
Confidence 34555555555555554422221 11 1258999999999999999997744 3567778876554
Q ss_pred Hh---hh-------hh------hhhHHHHHHHHH-HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC
Q 010809 302 EM---FV-------GV------GASRVRDLFKKA-KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (500)
Q Consensus 302 ~~---~v-------G~------~~~~vr~lf~~a-~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~ 364 (500)
+. |. |. +...+..-|... -...+|||+|||+|.|..+. +.+|..++..--
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt-- 536 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPT-- 536 (767)
T ss_pred CHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCc--
Confidence 32 21 11 111222222211 22457999999999997543 557777776532
Q ss_pred CCCCCeEEEEeeCCCCCCchhhcC--CCCcce-EEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC--cHHH
Q 010809 365 EGNTGIIVIAATNRADILDSALLR--PGRFDR-QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF--SGAD 439 (500)
Q Consensus 365 ~~~~~viVIaaTN~~~~Ld~aLlr--pgRfdr-~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~--sgad 439 (500)
.++.+++||+..|.-+....-|-. ..|++. .+.|.+++..+..+|+..++.....-...-.+.+|+..... +.+.
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRr 616 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARR 616 (767)
T ss_pred CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHH
Confidence 345678888888875532222210 115544 78999999999999999998877322222234444433322 4455
Q ss_pred HHHHHHHHHHHHHHcCC-------CCcCHHHHHHHHHHHHcCcCC
Q 010809 440 LANLLNEAAILAGRRGK-------AAISSKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 440 L~~lv~eAa~~A~r~~~-------~~It~~d~~~Ai~~v~~g~~~ 477 (500)
...+|+.|+..|..+.. ..|++.|+.+|+...+..+.-
T Consensus 617 aldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 617 ALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred HHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 66899999999977665 678999999999987665543
No 220
>PRK06526 transposase; Provisional
Probab=98.93 E-value=5.4e-09 Score=104.32 Aligned_cols=125 Identities=22% Similarity=0.361 Sum_probs=77.8
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF 304 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~ 304 (500)
+.|+...+.+...-.-....+|+..+ .+++|+||||||||+||.+++.++ |..+.+++..++.+..
T Consensus 73 fd~~~~~~~~~~~~~~l~~~~fi~~~-----------~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 73 FDFDHQRSLKRDTIAHLGTLDFVTGK-----------ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred ccCccCCCcchHHHHHHhcCchhhcC-----------ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 45555555554432222233444433 389999999999999999998765 7788888888887765
Q ss_pred hhhh-hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 305 VGVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 305 vG~~-~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
.... ...+...+... ..+.+|+|||++.+. .+.+..+.+.+++..... + + .+|.+||.+
T Consensus 142 ~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~---------~~~~~~~~L~~li~~r~~---~-~-s~IitSn~~ 201 (254)
T PRK06526 142 AAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP---------FEPEAANLFFQLVSSRYE---R-A-SLIVTSNKP 201 (254)
T ss_pred HHHHhcCcHHHHHHHh--ccCCEEEEcccccCC---------CCHHHHHHHHHHHHHHHh---c-C-CEEEEcCCC
Confidence 3221 11223333333 345799999998862 234455677777765432 1 2 366677764
No 221
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.92 E-value=4.4e-09 Score=112.13 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=122.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhhhh-
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV- 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~vG~- 307 (500)
.++|.+.....+.+.+..+... ...++++|++||||+++|+++... .+.||+.++|..+.+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~----------~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPS----------EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCC----------CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 4677777777666655544322 237999999999999999999654 46799999998664432211
Q ss_pred ----hh-------hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 010809 308 ----GA-------SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (500)
Q Consensus 308 ----~~-------~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~~~v 370 (500)
.. .....++.. ...++|||||||.+ +...+..+..++..-. .... ..++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ldei~~l-----------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVE---ADGGTLFLDEIGDI-----------SPMMQVRLLRAIQEREVQRVGSNQTISVDV 275 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeE---CCCCEEEEeccccC-----------CHHHHHHHHHHHccCcEEeCCCCceeeece
Confidence 00 000111222 23579999999999 3444444444443211 0000 1246
Q ss_pred EEEEeeCCCCCCchhhcCCCCcce-------EEEecCCCHHHHHH----HHHHHhcC---------CCCCccccHHHHHH
Q 010809 371 IVIAATNRADILDSALLRPGRFDR-------QVTVDVPDIRGRTE----ILKVHGSN---------KKFDADVSLDVIAM 430 (500)
Q Consensus 371 iVIaaTN~~~~Ld~aLlrpgRfdr-------~I~v~~Pd~~eR~~----IL~~~l~~---------~~l~~dvdl~~la~ 430 (500)
.+|++|+..- ..+..+|+|.+ .+.+..|+..+|.+ +++.++.. ..++++.--.....
T Consensus 276 rii~~t~~~~---~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 276 RLIAATHRDL---AAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred EEEEeCCCCH---HHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 7888887632 12223344432 57888898888766 33333221 11333322233344
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.|+| +.++|+++++.|+..+ ....|+.+++...+
T Consensus 353 ~wpg-N~reL~~~~~~~~~~~---~~~~i~~~~l~~~~ 386 (441)
T PRK10365 353 DWPG-NIRELENAVERAVVLL---TGEYISERELPLAI 386 (441)
T ss_pred CCCC-HHHHHHHHHHHHHHhC---CCCccchHhCchhh
Confidence 6788 9999999999988754 44568888876544
No 222
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.91 E-value=1.6e-09 Score=117.63 Aligned_cols=182 Identities=29% Similarity=0.435 Sum_probs=120.2
Q ss_pred eEEEEcCCCChHHHHHHHHH--HhcCCCEEEEechhhHHh-----hhhh--------hhhHHHHHHHHHHhCCCeEEEEc
Q 010809 266 GVLLVGPPGTGKTLLAKAIA--GEAGVPFFSISGSEFVEM-----FVGV--------GASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA--~e~~~pfi~is~se~~~~-----~vG~--------~~~~vr~lf~~a~~~~p~IIfID 330 (500)
.+++.|.|||||-.+||++- .+...||+.++|..+.+. ++|. ..+..+..+++|.. ..+|+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFld 414 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFLD 414 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHHH
Confidence 59999999999999999993 346789999999866543 2222 22233444444433 389999
Q ss_pred CcchhhhccCCCCCCCChHHHHHHHHHHHHh-----cCCCCCCCeEEEEeeCCCCCCchhhcCCCCcce-------EEEe
Q 010809 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-----DGFEGNTGIIVIAATNRADILDSALLRPGRFDR-------QVTV 398 (500)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~L~~LL~em-----d~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr-------~I~v 398 (500)
||..+ ....+..|.+.|.+- .+-...-.|.||+||+++- ..|.+.|||-. .+.+
T Consensus 415 eIgd~-----------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~~~i 480 (606)
T COG3284 415 EIGDM-----------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNAFVI 480 (606)
T ss_pred Hhhhc-----------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcCeee
Confidence 99887 455666666666652 2222233689999998742 34556666643 5677
Q ss_pred cCCCHHHHHH---HHHHHhcC-----CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 399 DVPDIRGRTE---ILKVHGSN-----KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 399 ~~Pd~~eR~~---IL~~~l~~-----~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.+|+..+|.+ +|..++.+ ..++++.-...++..||| +.++|.|++..++.++ ....|...|+...+
T Consensus 481 ~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~---~~g~~~~~dlp~~l 554 (606)
T COG3284 481 TLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS---DGGRIRVSDLPPEL 554 (606)
T ss_pred ccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC---CCCeeEcccCCHHH
Confidence 8888888776 23222221 334455556778889999 9999999999998776 33334444444333
No 223
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.90 E-value=5e-09 Score=106.78 Aligned_cols=198 Identities=24% Similarity=0.353 Sum_probs=128.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEechhhHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE 302 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~se~~~ 302 (500)
....|+.+++.+...+.+.+-...+..-+ ..+||.|.+||||-++||+.-. ....||+.++|..+.+
T Consensus 199 ~~~~F~~~v~~S~~mk~~v~qA~k~AmlD----------APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe 268 (511)
T COG3283 199 DVSGFEQIVAVSPKMKHVVEQAQKLAMLD----------APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPE 268 (511)
T ss_pred cccchHHHhhccHHHHHHHHHHHHhhccC----------CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCch
Confidence 45679999999888877766554432221 1489999999999999999843 3478999999987765
Q ss_pred hh-----hhh--hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc------CCCCCCC
Q 010809 303 MF-----VGV--GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GFEGNTG 369 (500)
Q Consensus 303 ~~-----vG~--~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd------~~~~~~~ 369 (500)
.. .|. +.+.-..+|++|... .+|+|||..+ +...+..|..+|+.-. +.+-.-+
T Consensus 269 ~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm-----------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vd 334 (511)
T COG3283 269 DAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM-----------SPRLQAKLLRFLNDGTFRRVGEDHEVHVD 334 (511)
T ss_pred hHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc-----------CHHHHHHHHHHhcCCceeecCCcceEEEE
Confidence 32 232 234556788888655 6999999777 4455555555655210 0011225
Q ss_pred eEEEEeeCCC--C-----CCchhhcCCCCcceEEEecCCCHHHHHHH--------HHHHhcCCC-----CCccccHHHHH
Q 010809 370 IIVIAATNRA--D-----ILDSALLRPGRFDRQVTVDVPDIRGRTEI--------LKVHGSNKK-----FDADVSLDVIA 429 (500)
Q Consensus 370 viVIaaTN~~--~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~I--------L~~~l~~~~-----l~~dvdl~~la 429 (500)
|.|||||..+ + ..-+.|.- |+. ++.+..|..++|.+- +..+..+.. ++++.-.....
T Consensus 335 VRVIcatq~nL~~lv~~g~fReDLfy--RLN-VLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~ 411 (511)
T COG3283 335 VRVICATQVNLVELVQKGKFREDLFY--RLN-VLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTR 411 (511)
T ss_pred EEEEecccccHHHHHhcCchHHHHHH--Hhh-eeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Confidence 8999999653 2 22233333 443 788899998888662 223333332 22333233344
Q ss_pred HhCCCCcHHHHHHHHHHHHHHH
Q 010809 430 MRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A 451 (500)
..|+| +.++|.|++-.|+...
T Consensus 412 y~WpG-NVRqL~N~iyRA~s~~ 432 (511)
T COG3283 412 YAWPG-NVRQLKNAIYRALTLL 432 (511)
T ss_pred cCCCc-cHHHHHHHHHHHHHHh
Confidence 57898 9999999999998765
No 224
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.88 E-value=3.8e-09 Score=95.38 Aligned_cols=125 Identities=26% Similarity=0.472 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhHHhhhhhhhh
Q 010809 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMFVGVGAS 310 (500)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~~~~vG~~~~ 310 (500)
+|...+.+++++-++.+.... ..|+|+|++||||+++|+++..... .||+.++|.+..
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~----------~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSS----------SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSS----------S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHhCCC----------CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 477788888888887764332 2799999999999999999987653 477777776533
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-CC------CCc
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-AD------ILD 383 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-~~------~Ld 383 (500)
.++++.+ ....|||+|+|.+ +.+.+..+.+++...+ ..++.+|+++.. ++ .++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L-----------~~~~Q~~L~~~l~~~~----~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRL-----------SPEAQRRLLDLLKRQE----RSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS------------HHHHHHHHHHHHHCT----TTTSEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHC-----------CHHHHHHHHHHHHhcC----CCCeEEEEEeCCCHHHHhhccchh
Confidence 3455554 4469999999999 5556666666666533 345567766654 22 355
Q ss_pred hhhcCCCCcce-EEEec
Q 010809 384 SALLRPGRFDR-QVTVD 399 (500)
Q Consensus 384 ~aLlrpgRfdr-~I~v~ 399 (500)
+.|.. |+.. +|.+|
T Consensus 122 ~~L~~--~l~~~~i~lP 136 (138)
T PF14532_consen 122 PDLYY--RLSQLEIHLP 136 (138)
T ss_dssp HHHHH--HCSTCEEEE-
T ss_pred HHHHH--HhCCCEEeCC
Confidence 55555 5542 44443
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.88 E-value=1.6e-08 Score=104.48 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=77.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh---hhhHHHHHHHHHHhCCCeEEEEcCcchhhhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV---GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~---~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~ 338 (500)
.+++|+||+|||||+||.|+|.++ +..+++++..++...+... ........++... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 589999999999999999999986 7899999999988765331 1111222244443 34699999997652
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-CCC----CchhhcCCCCcce---EEEecCCCHH
Q 010809 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADI----LDSALLRPGRFDR---QVTVDVPDIR 404 (500)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-~~~----Ld~aLlrpgRfdr---~I~v~~Pd~~ 404 (500)
.++.....+.++++..-. + +-.+|.|||. ++. +++.+.+ |+-. .+.+.-.|.+
T Consensus 260 -------~t~~~~~~Lf~iin~R~~---~-~k~tIiTSNl~~~el~~~~~eri~S--RL~~~~~~i~~~G~d~R 320 (329)
T PRK06835 260 -------ITEFSKSELFNLINKRLL---R-QKKMIISTNLSLEELLKTYSERISS--RLLGNFTLLKFYGEDIR 320 (329)
T ss_pred -------CCHHHHHHHHHHHHHHHH---C-CCCEEEECCCCHHHHHHHHhHHHHH--HHHcCCEEEEecCcChh
Confidence 344555666677665421 1 2246667775 332 3455555 5432 4555444544
No 226
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.86 E-value=7.2e-08 Score=95.62 Aligned_cols=184 Identities=18% Similarity=0.240 Sum_probs=124.4
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEE-
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSI- 295 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~i- 295 (500)
+|.+++.+-+++.+.+.++....+..+...-.-| ++++|||+|+||-|.+.++-+++ |++=..+
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~P------------Hll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFP------------HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCC------------eEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 4677777889999999999998887766522223 69999999999999999998876 2221111
Q ss_pred -----------------echhhHHh---hhhh-hhhHHHHHHHHHHhCC---------CeEEEEcCcchhhhccCCCCCC
Q 010809 296 -----------------SGSEFVEM---FVGV-GASRVRDLFKKAKENA---------PCIVFVDEIDAVGRQRGTGIGG 345 (500)
Q Consensus 296 -----------------s~se~~~~---~vG~-~~~~vr~lf~~a~~~~---------p~IIfIDEID~l~~~r~~~~~~ 345 (500)
+....++. -+|. ..-.+++++++..+.. -.+++|.|+|.+
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L---------- 139 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL---------- 139 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh----------
Confidence 11111110 0111 1123456666654332 359999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-cccc
Q 010809 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVS 424 (500)
Q Consensus 346 ~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvd 424 (500)
..+.+..| -..|+.+.. .+.+|..+|....+-+++++ |+ .-+.+|.|+.++...++...+.+.++. ++.-
T Consensus 140 -T~dAQ~aL---RRTMEkYs~--~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~ 210 (351)
T KOG2035|consen 140 -TRDAQHAL---RRTMEKYSS--NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKEL 210 (351)
T ss_pred -hHHHHHHH---HHHHHHHhc--CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHH
Confidence 33444444 444554443 46777778888888899988 76 478999999999999999888776655 3334
Q ss_pred HHHHHHhCCC
Q 010809 425 LDVIAMRTPG 434 (500)
Q Consensus 425 l~~la~~t~G 434 (500)
+..+++.+.|
T Consensus 211 l~rIa~kS~~ 220 (351)
T KOG2035|consen 211 LKRIAEKSNR 220 (351)
T ss_pred HHHHHHHhcc
Confidence 6778887776
No 227
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-08 Score=106.29 Aligned_cols=74 Identities=36% Similarity=0.640 Sum_probs=59.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhhhhh-hHHHHHHHHH----HhCCCeEEEEcCcchhhhcc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGA-SRVRDLFKKA----KENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG~~~-~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r 339 (500)
+|||.||+|+|||+||+.+|+-+++||...+|..+.. .|+|+.. ..+..++..| .+.+..|+||||+|.|..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999998865 5777643 3455566555 23345799999999998543
No 228
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.84 E-value=2.7e-08 Score=95.51 Aligned_cols=163 Identities=23% Similarity=0.289 Sum_probs=87.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC---CEEEEec-hhh----HHhh-------------h-----------------hh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISG-SEF----VEMF-------------V-----------------GV 307 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~---pfi~is~-se~----~~~~-------------v-----------------G~ 307 (500)
.++|+||+|+|||+|++.+.....- ..+++.. ... ...+ . ..
T Consensus 22 ~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 101 (234)
T PF01637_consen 22 HILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSED 101 (234)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG
T ss_pred EEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhh
Confidence 7999999999999999999998732 2222221 100 0011 0 01
Q ss_pred hhhHHHHHHHHHHhCC-CeEEEEcCcchhh-hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC-----
Q 010809 308 GASRVRDLFKKAKENA-PCIVFVDEIDAVG-RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD----- 380 (500)
Q Consensus 308 ~~~~vr~lf~~a~~~~-p~IIfIDEID~l~-~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~----- 380 (500)
....+..+++...+.. ..||+|||+|.+. .. .+....+..|...++......++.+|.++....
T Consensus 102 ~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~ 172 (234)
T PF01637_consen 102 SFSALERLLEKLKKKGKKVIIVIDEFQYLAIAS---------EEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEF 172 (234)
T ss_dssp -G--HHHHHHHHHHCHCCEEEEEETGGGGGBCT---------TTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcc---------cchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHh
Confidence 1234566666665443 4899999999995 11 122334444444444433344444444433211
Q ss_pred -CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC-CC-CccccHHHHHHhCCCCcHHHHH
Q 010809 381 -ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-KF-DADVSLDVIAMRTPGFSGADLA 441 (500)
Q Consensus 381 -~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~-~l-~~dvdl~~la~~t~G~sgadL~ 441 (500)
.-...+.. |+.. +.+++.+.++..++++..+... .+ .++.+++.+...+.| .|+-|.
T Consensus 173 ~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG-~P~~l~ 232 (234)
T PF01637_consen 173 LDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGG-NPRYLQ 232 (234)
T ss_dssp T-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHHHH
T ss_pred hcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCC-CHHHHh
Confidence 11223333 7775 9999999999999999877665 11 255668888888888 666554
No 229
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.84 E-value=3.7e-08 Score=100.91 Aligned_cols=101 Identities=26% Similarity=0.334 Sum_probs=68.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh-hhhHHHHHHHHHHhCCCeEEEEcCcchhhhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~-~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~ 338 (500)
.++|++|+||+|||||+||.|+|+++ |.++.+++.++|...+... ....+.+.++..+ ...+|+|||+.+-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e~-- 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAEQ-- 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCcc--
Confidence 35699999999999999999999987 7889999999887654322 1223445555544 34699999996641
Q ss_pred cCCCCCCCChH-HHHHHHHHHHH-hcCCCCCCCeEEEEeeCCC
Q 010809 339 RGTGIGGGNDE-REQTLNQLLTE-MDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 339 r~~~~~~~~~e-~~~~L~~LL~e-md~~~~~~~viVIaaTN~~ 379 (500)
.++. +...+..++.. +. .+..+|.|||.+
T Consensus 231 -------~s~~~~~~ll~~Il~~R~~-----~~~~ti~TSNl~ 261 (306)
T PRK08939 231 -------MSSWVRDEVLGVILQYRMQ-----EELPTFFTSNFD 261 (306)
T ss_pred -------ccHHHHHHHHHHHHHHHHH-----CCCeEEEECCCC
Confidence 1222 33556666553 32 234678888864
No 230
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.83 E-value=1.3e-07 Score=94.69 Aligned_cols=130 Identities=20% Similarity=0.288 Sum_probs=89.6
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC------------CCCCchhhcCCCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------ADILDSALLRPGR 391 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~------------~~~Ld~aLlrpgR 391 (500)
|.||||||+|.| +-|.-..||.-+.. .+. -++|.+||+ |.-++-.++. |
T Consensus 289 pGVLFIDEvHML-----------DIEcFsFlNrAlE~--d~~----PiiimaTNrgit~iRGTn~~SphGiP~D~lD--R 349 (454)
T KOG2680|consen 289 PGVLFIDEVHML-----------DIECFSFLNRALEN--DMA----PIIIMATNRGITRIRGTNYRSPHGIPIDLLD--R 349 (454)
T ss_pred cceEEEeeehhh-----------hhHHHHHHHHHhhh--ccC----cEEEEEcCCceEEeecCCCCCCCCCcHHHhh--h
Confidence 677888887777 33444455554441 122 266666764 4567777777 6
Q ss_pred cceEEEecCCCHHHHHHHHHHHhcCCCCCcccc-HHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 392 FDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS-LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 392 fdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd-l~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
. ..|...+++.++.++||+..+......-+.+ ++.+......-+-+-..+++..|.+.|.++....++.+|++++..-
T Consensus 350 ~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 350 M-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred h-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 6 3677788899999999999887654432222 4444444444456666799999999999999999999999999886
Q ss_pred HHc
Q 010809 471 IVA 473 (500)
Q Consensus 471 v~~ 473 (500)
.+.
T Consensus 429 FlD 431 (454)
T KOG2680|consen 429 FLD 431 (454)
T ss_pred Hhh
Confidence 653
No 231
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.82 E-value=1.4e-07 Score=99.43 Aligned_cols=227 Identities=19% Similarity=0.219 Sum_probs=148.2
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhhHH--
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVE-- 302 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~~~-- 302 (500)
-..+.|.+..+..+++++..-.. ..-+.++++.|.||||||.+...+.... ....++++|.++.+
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ 220 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS 220 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence 35678888888888887765221 2335689999999999999998774433 23458888875422
Q ss_pred --------hh----hhhhh-hHHHHHHHHH-HhCC-CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 303 --------MF----VGVGA-SRVRDLFKKA-KENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 303 --------~~----vG~~~-~~vr~lf~~a-~~~~-p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
.+ ++.+. ......|+.- .... +-++++||+|.++.+. +++|..+.. +.. -++
T Consensus 221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----------~~vLy~lFe-wp~-lp~ 287 (529)
T KOG2227|consen 221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----------QTVLYTLFE-WPK-LPN 287 (529)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----------cceeeeehh-ccc-CCc
Confidence 11 11111 1222334333 3333 6799999999997432 223333332 222 235
Q ss_pred CCeEEEEeeCCCCCCchhhcC----CCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHHhCCCCcHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLR----PGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSGADLA 441 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlr----pgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~la~~t~G~sgadL~ 441 (500)
.++++|+..|..|.-|..|-| -+.-...+.|++++.++..+||+..+......... .++..|+...|.|| |++
T Consensus 288 sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlR 366 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLR 366 (529)
T ss_pred ceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHH
Confidence 679999999988766655432 11223478999999999999999999887755443 36778888888666 555
Q ss_pred ---HHHHHHHHHHHHcCC----------------CCcCHHHHHHHHHHHHcCcCCC
Q 010809 442 ---NLLNEAAILAGRRGK----------------AAISSKEIDDSIDRIVAGMEGT 478 (500)
Q Consensus 442 ---~lv~eAa~~A~r~~~----------------~~It~~d~~~Ai~~v~~g~~~~ 478 (500)
.+|+.|..+|..+.+ ..|..+++-.++.++...+...
T Consensus 367 kaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~ 422 (529)
T KOG2227|consen 367 KALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSAR 422 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhh
Confidence 677788888776543 3356788888888876555443
No 232
>PRK09183 transposase/IS protein; Provisional
Probab=98.82 E-value=3.7e-08 Score=98.62 Aligned_cols=100 Identities=23% Similarity=0.358 Sum_probs=66.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhhhh-hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~vG~-~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~ 340 (500)
.+++|+||||||||+||.+++.+ .|..+.++++.++...+... ....+...+... ...+++++|||++.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~---- 177 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP---- 177 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC----
Confidence 37999999999999999999765 47788889988887554321 122344555543 2456799999997752
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
.+.+....+.+++....+ +. -+|.|||.+
T Consensus 178 -----~~~~~~~~lf~li~~r~~---~~--s~iiTsn~~ 206 (259)
T PRK09183 178 -----FSQEEANLFFQVIAKRYE---KG--SMILTSNLP 206 (259)
T ss_pred -----CChHHHHHHHHHHHHHHh---cC--cEEEecCCC
Confidence 233444566677665432 12 256677763
No 233
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.1e-07 Score=97.78 Aligned_cols=130 Identities=22% Similarity=0.285 Sum_probs=94.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-----------------------CEEEEechhhHHhhhhhhhhHHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------------------PFFSISGSEFVEMFVGVGASRVRDLFK 317 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~-----------------------pfi~is~se~~~~~vG~~~~~vr~lf~ 317 (500)
.+.|.++||+||.|+||+.+|+++|..+-+ .|+.+...+ ..+ ..+.+.+|++.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHH
Confidence 456778999999999999999999986522 122222110 000 012345666655
Q ss_pred HHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcc
Q 010809 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (500)
Q Consensus 318 ~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfd 393 (500)
.+.. ....|++||++|.+ .....|.||+.++ +++.++++|..|+.++.+-|.+++ |+.
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m--------------~~~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~S--RCq 160 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM--------------NESASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVS--RCQ 160 (319)
T ss_pred HHhhCcccCCceEEEecchhhh--------------CHHHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHh--cce
Confidence 5532 33479999999999 2456788899888 466778999999999999999999 995
Q ss_pred eEEEecCCCHHHHHHHHHH
Q 010809 394 RQVTVDVPDIRGRTEILKV 412 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~ 412 (500)
.+.++.|+.++..+.+..
T Consensus 161 -~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 161 -QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -eEeCCCCCHHHHHHHHHH
Confidence 889999999988777764
No 234
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.80 E-value=2.2e-09 Score=95.70 Aligned_cols=112 Identities=32% Similarity=0.404 Sum_probs=58.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hhH-HhhhhhhhhHHH-HHHHHHHh-CCCeEEEEcCcchhhhccCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFV-EMFVGVGASRVR-DLFKKAKE-NAPCIVFVDEIDAVGRQRGT 341 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~s-e~~-~~~vG~~~~~vr-~lf~~a~~-~~p~IIfIDEID~l~~~r~~ 341 (500)
+|||.|+||+|||++|+++|+..+..|..|.+. ++. ....|...-... .-|+-.+. --..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 589999999999999999999999999999875 332 223332100000 00000000 00149999999776
Q ss_pred CCCCCChHHHHHHHHHHHHhcC---------CCCCCCeEEEEeeCCCC-----CCchhhcCCCCcc
Q 010809 342 GIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD-----ILDSALLRPGRFD 393 (500)
Q Consensus 342 ~~~~~~~e~~~~L~~LL~emd~---------~~~~~~viVIaaTN~~~-----~Ld~aLlrpgRfd 393 (500)
..++...||+.|.+ +.-...+.||||-|+.+ .|+++++. ||-
T Consensus 75 --------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF~ 130 (131)
T PF07726_consen 75 --------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD--RFM 130 (131)
T ss_dssp ---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--TSS
T ss_pred --------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--ccc
Confidence 23445555555532 22345689999999876 68888888 873
No 235
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.80 E-value=1.1e-07 Score=103.89 Aligned_cols=212 Identities=18% Similarity=0.227 Sum_probs=123.1
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
....|+++..+.+.+||+-...-.++++.+++.... +....+-+||+||||||||++++.+|++++..+....
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 346789999999999999997777777776664211 1222346889999999999999999999987666542
Q ss_pred -chhhH------Hhhhhhh---------hhHHHHH-HHHHHh-----------CCCeEEEEcCcchhhhccCCCCCCCCh
Q 010809 297 -GSEFV------EMFVGVG---------ASRVRDL-FKKAKE-----------NAPCIVFVDEIDAVGRQRGTGIGGGND 348 (500)
Q Consensus 297 -~se~~------~~~vG~~---------~~~vr~l-f~~a~~-----------~~p~IIfIDEID~l~~~r~~~~~~~~~ 348 (500)
...+. ..+.+.. .....++ +...+. ..+.||+|||+-.+... +..
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~-------~~~ 150 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR-------DTS 150 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccch-------hHH
Confidence 22210 1111110 0111221 111111 24579999999876422 122
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CeEEEEee-C------CC--------CCCchhhcCCCCcceEEEecCCCHHHHHHHHHH
Q 010809 349 EREQTLNQLLTEMDGFEGNT-GIIVIAAT-N------RA--------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKV 412 (500)
Q Consensus 349 e~~~~L~~LL~emd~~~~~~-~viVIaaT-N------~~--------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~ 412 (500)
.....|.+++.. ... .+|+|.+- + .. ..+++.++...++. +|.|.+-...--.+.|+.
T Consensus 151 ~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~-~I~FNpIa~T~mkKaL~r 224 (519)
T PF03215_consen 151 RFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGIT-RIKFNPIAPTFMKKALKR 224 (519)
T ss_pred HHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCce-EEEecCCCHHHHHHHHHH
Confidence 333444444432 122 56666661 1 11 14566666544553 788877776555554444
Q ss_pred HhcCC-------CCCcc-cc-HHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 010809 413 HGSNK-------KFDAD-VS-LDVIAMRTPGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 413 ~l~~~-------~l~~d-vd-l~~la~~t~G~sgadL~~lv~eAa~~A~ 452 (500)
.+... ...++ .. ++.|+..+.| ||+.+++.-...+.
T Consensus 225 I~~~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 225 ILKKEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 33221 12222 22 6677776665 99999998888876
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.74 E-value=3.6e-08 Score=93.24 Aligned_cols=99 Identities=27% Similarity=0.395 Sum_probs=64.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh-hhhHHHHHHHHHHhCCCeEEEEcCcchhhhcc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV-GASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~-~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r 339 (500)
+.+++|+||||||||+||.+++.++ +.++.+++.+++.+..-.. ........++.... ..+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~---- 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE---- 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS----
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee----
Confidence 3489999999999999999998865 8999999999998765322 12234455555543 368999999543
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
..++.....+.+++..--+ + + ..|.|||.
T Consensus 121 -----~~~~~~~~~l~~ii~~R~~---~-~-~tIiTSN~ 149 (178)
T PF01695_consen 121 -----PLSEWEAELLFEIIDERYE---R-K-PTIITSNL 149 (178)
T ss_dssp --------HHHHHCTHHHHHHHHH---T---EEEEEESS
T ss_pred -----eecccccccchhhhhHhhc---c-c-CeEeeCCC
Confidence 1234445566666665432 2 2 35558886
No 237
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.72 E-value=1.1e-07 Score=105.15 Aligned_cols=190 Identities=15% Similarity=0.145 Sum_probs=127.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhHHhhhhhhh---------h-HHHHHHHHHHhCCCeEEEEcCc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGA---------S-RVRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~~~~vG~~~---------~-~vr~lf~~a~~~~p~IIfIDEI 332 (500)
.||+|.|++||+|++++++++.-+. .||..+..+--.+..+|.+. . .-..++..|. ..|||+||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah---~GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD---GGVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc---CCEEEecCc
Confidence 3899999999999999999999874 58887766554455555431 0 0112233222 259999999
Q ss_pred chhhhccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEeeCCC---CCCchhhcCCCCcceEEEe
Q 010809 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTV 398 (500)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~-----------~~~~~viVIaaTN~~---~~Ld~aLlrpgRfdr~I~v 398 (500)
..+ ...++..|+.-|+.- .-...+++|++-|.. ..|.++++. ||+.++.+
T Consensus 103 n~~--------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 103 ERL--------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred ccC--------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 777 345777777777531 123468888874432 358899999 99999999
Q ss_pred cCCCHHHHH-------HHHHH--HhcCCCCCccccHHHHHHh--CCCC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 010809 399 DVPDIRGRT-------EILKV--HGSNKKFDADVSLDVIAMR--TPGF-SGADLANLLNEAAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 399 ~~Pd~~eR~-------~IL~~--~l~~~~l~~dvdl~~la~~--t~G~-sgadL~~lv~eAa~~A~r~~~~~It~~d~~~ 466 (500)
+.|+..+.. +|... .+.+..+.++ .++.++.. .-|. |.+--..+++-|..+|..+|+..|+.+|+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~-~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPE-AIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHH-HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 988765422 23322 2233333322 22332221 2244 6666778999999999999999999999999
Q ss_pred HHHHHHcC
Q 010809 467 SIDRIVAG 474 (500)
Q Consensus 467 Ai~~v~~g 474 (500)
|+.-++..
T Consensus 246 Aa~lvL~h 253 (584)
T PRK13406 246 AARLVLAP 253 (584)
T ss_pred HHHHHHHh
Confidence 99977654
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.72 E-value=1.3e-07 Score=94.47 Aligned_cols=70 Identities=29% Similarity=0.519 Sum_probs=51.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhhhhh-HHH-HHHHHHHhCCCeEEEEcCcchh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGAS-RVR-DLFKKAKENAPCIVFVDEIDAV 335 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~~~~-~vr-~lf~~a~~~~p~IIfIDEID~l 335 (500)
+.+++|+||||||||+||-|++.++ |..+++++..+++...-..-.. ... .+....+ ...+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 4489999999999999999998876 8999999999998765332221 222 2222232 3469999999665
No 239
>PF13173 AAA_14: AAA domain
Probab=98.69 E-value=1.4e-07 Score=83.98 Aligned_cols=118 Identities=23% Similarity=0.316 Sum_probs=73.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG 342 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~ 342 (500)
+.++|+||+|+|||++++.++.+.. ..++++++.+....-.... + +.+.+.+.....+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~iDEiq~~------- 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADP-D-LLEYFLELIKPGKKYIFIDEIQYL------- 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhh-h-hHHHHHHhhccCCcEEEEehhhhh-------
Confidence 3689999999999999999998876 7888898877654321111 1 223333222235689999999987
Q ss_pred CCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC----chhhcCCCCcceEEEecCCCHHH
Q 010809 343 IGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL----DSALLRPGRFDRQVTVDVPDIRG 405 (500)
Q Consensus 343 ~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L----d~aLlrpgRfdr~I~v~~Pd~~e 405 (500)
+.....+..+.... .++-+|.|+.....+ ...+ +||.. .+.+.+.+..|
T Consensus 74 -----~~~~~~lk~l~d~~------~~~~ii~tgS~~~~l~~~~~~~l--~gr~~-~~~l~Plsf~E 126 (128)
T PF13173_consen 74 -----PDWEDALKFLVDNG------PNIKIILTGSSSSLLSKDIAESL--AGRVI-EIELYPLSFRE 126 (128)
T ss_pred -----ccHHHHHHHHHHhc------cCceEEEEccchHHHhhcccccC--CCeEE-EEEECCCCHHH
Confidence 23445556665521 233444444332222 2233 45775 77888877765
No 240
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.7e-07 Score=106.50 Aligned_cols=132 Identities=28% Similarity=0.337 Sum_probs=90.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCC-CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh--h
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGA-RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM--F 304 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~-~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~--~ 304 (500)
+.|+|++++...+-+++..-+..- +- +++-.++|.||.|+|||-||+++|... .-.|+.+++++|.+. .
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl-----~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskl 636 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGL-----KDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKL 636 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhccc-----CCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhc
Confidence 468899998888888776533211 11 244578999999999999999999976 568999999988762 1
Q ss_pred hh-----hhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC------CCCeEEE
Q 010809 305 VG-----VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------NTGIIVI 373 (500)
Q Consensus 305 vG-----~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~------~~~viVI 373 (500)
.| .|......+.+..++...+||+|||||.. +......+.|++..-.--.. -.++|||
T Consensus 637 igsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA-----------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 637 IGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA-----------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred cCCCcccccchhHHHHHHHHhcCCceEEEEechhhc-----------CHHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 11 12233456777788888899999999986 43344444455443211111 2368999
Q ss_pred EeeCC
Q 010809 374 AATNR 378 (500)
Q Consensus 374 aaTN~ 378 (500)
+|+|.
T Consensus 706 MTsn~ 710 (898)
T KOG1051|consen 706 MTSNV 710 (898)
T ss_pred Eeccc
Confidence 99885
No 241
>PRK06921 hypothetical protein; Provisional
Probab=98.67 E-value=2e-07 Score=93.75 Aligned_cols=103 Identities=19% Similarity=0.248 Sum_probs=63.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcch-hhhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA-VGRQ 338 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~-l~~~ 338 (500)
..+++|+||||||||+|+.|+|+++ +..+++++..++...+... .......++.. ....+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEeccccccCCC
Confidence 4589999999999999999999875 6788999987776543221 11222333333 2347999999954 2111
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
. ...+.....+..+++..-. +. -.+|.|||.
T Consensus 194 e-----~~t~~~~~~lf~iin~R~~---~~-k~tIitsn~ 224 (266)
T PRK06921 194 P-----RATEWQIEQMYSVLNYRYL---NH-KPILISSEL 224 (266)
T ss_pred c-----cCCHHHHHHHHHHHHHHHH---CC-CCEEEECCC
Confidence 1 1133344566666665421 11 234667775
No 242
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=2.1e-07 Score=96.21 Aligned_cols=132 Identities=17% Similarity=0.277 Sum_probs=90.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-------------------------CEEEEechhh---HHh-hhhhhhhHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------------------PFFSISGSEF---VEM-FVGVGASRV 312 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~-------------------------pfi~is~se~---~~~-~vG~~~~~v 312 (500)
+.|.++||+||+|+|||++|+++|+.+.+ .|++++...- ..+ ....+.+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 67889999999999999999999987532 1333332110 000 000234567
Q ss_pred HHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcC
Q 010809 313 RDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR 388 (500)
Q Consensus 313 r~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlr 388 (500)
|++.+.+.. ....|++||++|.+ +.+ ..+.+++.++... .++.+|.+|+.++.+.+.+.+
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L-----------d~~---a~naLLk~LEep~--~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM-----------NLQ---AANSLLKVLEEPP--PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC-----------CHH---HHHHHHHHHHhCc--CCCEEEEEeCChHhChHHHHH
Confidence 887777643 33469999999998 333 4455555555432 346677788888889999988
Q ss_pred CCCcceEEEecCCCHHHHHHHHHH
Q 010809 389 PGRFDRQVTVDVPDIRGRTEILKV 412 (500)
Q Consensus 389 pgRfdr~I~v~~Pd~~eR~~IL~~ 412 (500)
|+. .+.+++|+.++..+.|..
T Consensus 163 --Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 --RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --Hhh-hhcCCCCCHHHHHHHHHh
Confidence 884 789999999987777654
No 243
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.56 E-value=6.8e-07 Score=90.18 Aligned_cols=164 Identities=20% Similarity=0.317 Sum_probs=83.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-C--EEEEechhhHHh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-P--FFSISGSEFVEM 303 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-p--fi~is~se~~~~ 303 (500)
++.|.++.=.-..-.....+++.+-.. .+++||+||+|||||.+++..-.+..- . ...++++....
T Consensus 6 ~~~~~~~~VpT~dt~r~~~ll~~l~~~----------~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt- 74 (272)
T PF12775_consen 6 EMPFNEILVPTVDTVRYSYLLDLLLSN----------GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT- 74 (272)
T ss_dssp -------T---HHHHHHHHHHHHHHHC----------TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH-
T ss_pred ccccceEEeCcHHHHHHHHHHHHHHHc----------CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC-
Confidence 455666554444344445555553221 227999999999999999988766532 2 23344443221
Q ss_pred hhhhhhhHHHHHHHHH-----------HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC------
Q 010809 304 FVGVGASRVRDLFKKA-----------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG------ 366 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a-----------~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~------ 366 (500)
+..++.+++.. ..+..+|+||||+..-..... |.....+.|.|++..- |+-.
T Consensus 75 -----s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y-----gtq~~iElLRQ~i~~~-g~yd~~~~~~ 143 (272)
T PF12775_consen 75 -----SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY-----GTQPPIELLRQLIDYG-GFYDRKKLEW 143 (272)
T ss_dssp -----HHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT-----S--HHHHHHHHHHHCS-EEECTTTTEE
T ss_pred -----HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC-----CCcCHHHHHHHHHHhc-CcccCCCcEE
Confidence 12222222211 113347999999987643321 1122234555555431 2111
Q ss_pred --CCCeEEEEeeCCCC---CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 367 --NTGIIVIAATNRAD---ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 367 --~~~viVIaaTN~~~---~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
=.++.+||+.+.+. .+++.++| .| ..+.++.|+.+....|+...+.
T Consensus 144 ~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 144 KSIEDIQFVAAMNPTGGRNPISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEECSEEEEEEESSTTT--SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred EEEeeeEEEEecCCCCCCCCCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 13578889888633 47888888 77 4899999999988887766553
No 244
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=2.4e-07 Score=81.73 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=54.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEechhhH------Hhh---hhh------hhh-HHHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGSEFV------EMF---VGV------GAS-RVRDLFKKAK 320 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~se~~------~~~---vG~------~~~-~vr~lf~~a~ 320 (500)
+.++++||||+|||++++.++.+. ..+++++++.... ... .+. ... ..+.+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 468999999999999999999977 7888888876543 111 110 112 2233344444
Q ss_pred hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
.....+|+|||+|.+. ....++.|...++
T Consensus 85 ~~~~~~lviDe~~~l~-------------~~~~l~~l~~l~~ 113 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF-------------SDEFLEFLRSLLN 113 (131)
T ss_dssp HCTEEEEEEETTHHHH-------------THHHHHHHHHHTC
T ss_pred hcCCeEEEEeChHhcC-------------CHHHHHHHHHHHh
Confidence 4444599999999983 1456666655555
No 245
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.52 E-value=3.6e-07 Score=95.67 Aligned_cols=106 Identities=21% Similarity=0.318 Sum_probs=67.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEEechhhHHhhhh------hhhhHHHHHHHHHHhCCCeEEEEcCcc
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFVEMFVG------VGASRVRDLFKKAKENAPCIVFVDEID 333 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~-pfi~is~se~~~~~vG------~~~~~vr~lf~~a~~~~p~IIfIDEID 333 (500)
...|+|++||||+|+|||+|.-.+...+.. .-..+...+|....-. ....-+..+.+...+. ..+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~-~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKE-SRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhc-CCEEEEeeee
Confidence 457899999999999999999999887644 2233333445432111 1122233333333332 3599999997
Q ss_pred hhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-CCCC
Q 010809 334 AVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADIL 382 (500)
Q Consensus 334 ~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-~~~L 382 (500)
.- +-.....+..|+..+- ..++++|+|+|+ |+.|
T Consensus 138 V~-----------DiaDAmil~rLf~~l~----~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 138 VT-----------DIADAMILKRLFEALF----KRGVVLVATSNRPPEDL 172 (362)
T ss_pred cc-----------chhHHHHHHHHHHHHH----HCCCEEEecCCCChHHH
Confidence 64 2223456777777664 468999999997 4433
No 246
>PF06480 FtsH_ext: FtsH Extracellular; InterPro: IPR011546 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain is found in the FtsH family of proteins that include FtsH a membrane-bound ATP-dependent protease universally conserved in prokaryotes []. The FtsH peptidases, which belong to MEROPS peptidase family M41 (clan MA(E)), efficiently degrade proteins that have a low thermodynamic stability - e.g. they lack robust unfoldase activity. This feature may be key and implies that this could be a criterion for degrading a protein. In Oenococcus oeni (Leuconostoc oenos) FtsH is involved in protection against environmental stress [], and shows increased expression under heat or osmotic stress. These two lines of evidence suggest that it is a fundamental prokaryotic self-protection mechanism that checks if proteins are correctly folded. The precise function of this N-terminal region is unclear. ; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0016021 integral to membrane; PDB: 2LNA_A.
Probab=98.52 E-value=9.9e-08 Score=81.55 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhhcC-CCCCCCCCCCCccccHHHHHHHHhhCCccEEEEeeCCeE--------EEEEecccccCcce
Q 010809 65 LKKLVGNVGVGTALLGSG-KAYADEQGVSSSRMSYSRFLEYLDKDRVKKVDLFENGTI--------AIVEAISPELGNRV 135 (500)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~f~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~ 135 (500)
++|++++++++++++.+. .. ...+..+++||+|+++|++|+|++|.+.++... ..............
T Consensus 2 ~~~ili~~vi~~l~~~~~~~~----~~~~~~~i~YS~F~~~l~~g~V~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (110)
T PF06480_consen 2 ILYILIILVILLLFNFFFFNS----NNSQTKEISYSEFLQMLEKGNVKKVVIQNDKITEPKKDNPTGDIEGKTKDGSKYT 77 (110)
T ss_dssp -----------------S----------SSEE--HHHHHHTGGGT-EEEEEEETTTEE---------EEEE-TTTS-STT
T ss_pred cceehhHHHHHHHHHHHHhhc----ccCCCcEECHHHHHHHHHcCCEEEEEEECCEEEEeeeccccccccccccCCCccE
Confidence 578888877777776653 21 234567899999999999999999999866544 11111111111112
Q ss_pred eEEEEEcCC---CcHHHHHHHHhcCcceeecc
Q 010809 136 QRVRVQLPG---LSQELLQKFREKNIDFAAHN 164 (500)
Q Consensus 136 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 164 (500)
.......+. ..+.+.+.+.++|+++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~L~~~~~~~~v~~~~~~ 109 (110)
T PF06480_consen 78 TFYTPSIPSVDSFDEFLIEALVEKGVKYESVP 109 (110)
T ss_dssp --EEEE-S-HHHHHHHHHHHHHHTT--TTT--
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHCCCccceec
Confidence 222223221 12456777778888766543
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.49 E-value=2.2e-06 Score=91.91 Aligned_cols=210 Identities=15% Similarity=0.222 Sum_probs=113.4
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHHh--cChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFL--KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l--~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
..+|.++..+-+.++++-...-..++++++..+ ..|. +| .+-+||+||+|||||+.++.+|.++|+.++.-
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~----l~---~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew 141 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPK----LG---SRILLLTGPSGCGKSTTVKVLSKELGYQLIEW 141 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccC----CC---ceEEEEeCCCCCCchhHHHHHHHhhCceeeee
Confidence 356888888899999987655555555544411 1121 11 22588999999999999999999999877765
Q ss_pred ech-------------hhHHhhhhhhhhHHHHHHHHH------------HhCCCeEEEEcCcchhhhccCCCCCCCChHH
Q 010809 296 SGS-------------EFVEMFVGVGASRVRDLFKKA------------KENAPCIVFVDEIDAVGRQRGTGIGGGNDER 350 (500)
Q Consensus 296 s~s-------------e~~~~~vG~~~~~vr~lf~~a------------~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~ 350 (500)
+.. .+...+....-.........+ ....+.+|+|||+-..... + .
T Consensus 142 ~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~--------d--~ 211 (634)
T KOG1970|consen 142 SNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYR--------D--D 211 (634)
T ss_pred cCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhh--------h--h
Confidence 411 111111111111111122222 1134679999999776422 1 2
Q ss_pred HHHHHHHHHHhcCCCCCCCeEEEEeeC--CCCCCchhhcCC------CCcceEEEecCCCHHHHHHHHHHHhcCC--C--
Q 010809 351 EQTLNQLLTEMDGFEGNTGIIVIAATN--RADILDSALLRP------GRFDRQVTVDVPDIRGRTEILKVHGSNK--K-- 418 (500)
Q Consensus 351 ~~~L~~LL~emd~~~~~~~viVIaaTN--~~~~Ld~aLlrp------gRfdr~I~v~~Pd~~eR~~IL~~~l~~~--~-- 418 (500)
.+.+..+|.++-.....+ +|++.|+ .++..++..+.+ .|.+ .|.|.+-...--++.|+..+... +
T Consensus 212 ~~~f~evL~~y~s~g~~P--lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~-~IsFNPIa~T~MKK~L~ric~~e~~~~s 288 (634)
T KOG1970|consen 212 SETFREVLRLYVSIGRCP--LIFIITDSLSNGNNNQDRLFPKDIQEEPRIS-NISFNPIAPTIMKKFLKRICRIEANKKS 288 (634)
T ss_pred HHHHHHHHHHHHhcCCCc--EEEEEeccccCCCcchhhhchhhhhhccCcc-eEeecCCcHHHHHHHHHHHHHHhccccc
Confidence 334444444433222233 3333333 233333322221 1554 67776666655555555444321 1
Q ss_pred ---CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 419 ---FDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 419 ---l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
+.....++.++.... +||+.+++...+.+
T Consensus 289 ~~k~~~~~~v~~i~~~s~----GDIRsAInsLQlss 320 (634)
T KOG1970|consen 289 GIKVPDTAEVELICQGSG----GDIRSAINSLQLSS 320 (634)
T ss_pred CCcCchhHHHHHHHHhcC----ccHHHHHhHhhhhc
Confidence 222334555555444 49999999988876
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.48 E-value=1.4e-06 Score=78.66 Aligned_cols=110 Identities=23% Similarity=0.281 Sum_probs=65.0
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh----------------------hh--hhhHHHHHHHHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV----------------------GV--GASRVRDLFKKA 319 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v----------------------G~--~~~~vr~lf~~a 319 (500)
++|+||||+|||+++..++..+ +.++++++......... .. .....+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 67788887754432110 00 000111223445
Q ss_pred HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
....|.+|+|||+..+......+..+......+.+..++..+. ..++.+|++++...
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~vv~~~~~~~ 138 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR----KGGVTVIFTLQVPS 138 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh----cCCceEEEEEecCC
Confidence 5667889999999998654321001122333455555555543 23566666665443
No 249
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.46 E-value=5.6e-08 Score=100.68 Aligned_cols=216 Identities=23% Similarity=0.261 Sum_probs=111.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhh--CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAI--GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~--G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~ 309 (500)
+|.|.+.+|..+.=.+ +........- ..+..-++||+|.||||||.|.+.++.-+.. -+++++..... .|.++
T Consensus 25 ~i~g~~~iK~aill~L--~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~--~gLta 99 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQL--FGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSA--AGLTA 99 (331)
T ss_dssp TTTT-HHHHHHHCCCC--TT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTC--CCCCE
T ss_pred cCcCcHHHHHHHHHHH--HhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCccc--CCccc
Confidence 5788888877543211 1111100000 0122337999999999999999988665432 33444332110 00000
Q ss_pred h----------HH-HHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCC
Q 010809 310 S----------RV-RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGN 367 (500)
Q Consensus 310 ~----------~v-r~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~-----------~~~ 367 (500)
. .+ ...+-.|. ..|++|||+|.+- + .....|+..|+.- .-+
T Consensus 100 ~~~~d~~~~~~~leaGalvlad---~GiccIDe~dk~~-----------~---~~~~~l~eaMEqq~isi~kagi~~~l~ 162 (331)
T PF00493_consen 100 SVSRDPVTGEWVLEAGALVLAD---GGICCIDEFDKMK-----------E---DDRDALHEAMEQQTISIAKAGIVTTLN 162 (331)
T ss_dssp EECCCGGTSSECEEE-HHHHCT---TSEEEECTTTT-------------C---HHHHHHHHHHHCSCEEECTSSSEEEEE
T ss_pred eeccccccceeEEeCCchhccc---Cceeeeccccccc-----------c---hHHHHHHHHHHcCeeccchhhhccccc
Confidence 0 00 01222332 3599999999982 2 2244555555531 012
Q ss_pred CCeEEEEeeCCCC-------------CCchhhcCCCCcceEEEe-cCCCHHHHHHHHHHHhcCC----------------
Q 010809 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDRQVTV-DVPDIRGRTEILKVHGSNK---------------- 417 (500)
Q Consensus 368 ~~viVIaaTN~~~-------------~Ld~aLlrpgRfdr~I~v-~~Pd~~eR~~IL~~~l~~~---------------- 417 (500)
.+.-|+|++|+.. .+++.|++ |||-.+.+ +.|+.+.-..+.+..++..
T Consensus 163 ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~ 240 (331)
T PF00493_consen 163 ARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDK 240 (331)
T ss_dssp ---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-
T ss_pred chhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCC
Confidence 3578999998644 47889999 99976654 6777655555444333221
Q ss_pred CCCcccc-------------------HHHHHH-------------hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 418 KFDADVS-------------------LDVIAM-------------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 418 ~l~~dvd-------------------l~~la~-------------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
.+..+.- .+.|.. .....+.+.|+.+++-|-.+|.-+-++.|+.+|+.
T Consensus 241 ~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~ 320 (331)
T PF00493_consen 241 PISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVE 320 (331)
T ss_dssp TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHH
T ss_pred ccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHH
Confidence 1111100 111111 01124667888999999999999999999999999
Q ss_pred HHHHHH
Q 010809 466 DSIDRI 471 (500)
Q Consensus 466 ~Ai~~v 471 (500)
.|++=+
T Consensus 321 ~Ai~L~ 326 (331)
T PF00493_consen 321 EAIRLF 326 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998743
No 250
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.45 E-value=9.2e-06 Score=80.09 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=90.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~ 345 (500)
+..++||+|||||..+|.+|..+|.+++.++|++-.+ ...+..+|.-+... .+.+++||++.+
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl---------- 96 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL---------- 96 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS----------
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh----------
Confidence 6789999999999999999999999999999987554 34456666655443 379999999998
Q ss_pred CChHHHHHHHHHHHHh----cCC-----------CCCCCeEEEEeeCC----CCCCchhhcCCCCcceEEEecCCCHHHH
Q 010809 346 GNDEREQTLNQLLTEM----DGF-----------EGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRGR 406 (500)
Q Consensus 346 ~~~e~~~~L~~LL~em----d~~-----------~~~~~viVIaaTN~----~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR 406 (500)
+.+.-.++.+.+..+ ..- .-+.+.-+..|.|. ...|++.|+. -| |.+.+..||.+
T Consensus 97 -~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~-- 170 (231)
T PF12774_consen 97 -SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS-- 170 (231)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH--
T ss_pred -hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH--
Confidence 333333444433332 110 11223445556663 3468888877 56 79999999998
Q ss_pred HHHHHHHhcCCCCCccccHHHHHH-----------h-----CCCCcHHHHHHHHHHHHHH
Q 010809 407 TEILKVHGSNKKFDADVSLDVIAM-----------R-----TPGFSGADLANLLNEAAIL 450 (500)
Q Consensus 407 ~~IL~~~l~~~~l~~dvdl~~la~-----------~-----t~G~sgadL~~lv~eAa~~ 450 (500)
.|.+..+-..++... ..+|+ . -..|.-+.|+.++..|..+
T Consensus 171 -~I~ei~L~s~GF~~a---~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~vl~~a~~~ 226 (231)
T PF12774_consen 171 -LIAEILLLSQGFKDA---KSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKSVLRMAGSL 226 (231)
T ss_dssp -HHHHHHHHCCCTSSH---HHHHHHHHHHHHHHHHCS-SSTT---SHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcCchhH---HHHHHHHHHHHHHHHHhhccCccccccHHHHHHHHHHHHHH
Confidence 455555544443321 22221 1 1235667777777776643
No 251
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.44 E-value=4.4e-07 Score=100.94 Aligned_cols=188 Identities=27% Similarity=0.319 Sum_probs=111.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHH--H---HH---HhCCCeEEEEcCcchhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLF--K---KA---KENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf--~---~a---~~~~p~IIfIDEID~l~~ 337 (500)
++||.|.||||||.|.+.+++-+-..++ .++..- .-+|.++..+++-. + ++ -...+.|++|||+|.+
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vy-tsgkgs--s~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm-- 395 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVY-TSGKGS--SAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM-- 395 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEE-Eccccc--cccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC--
Confidence 7999999999999999999987754443 222110 01222333233222 0 00 1123569999999998
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEeeCCCC-------------CCchhhcCCCCcc
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRAD-------------ILDSALLRPGRFD 393 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~-----------~~~~~viVIaaTN~~~-------------~Ld~aLlrpgRfd 393 (500)
+++. .+.+...|+.- .-+.+.-|+||+|+.. .|+++|++ |||
T Consensus 396 ---------~~~d---r~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--RFD 461 (682)
T COG1241 396 ---------NEED---RVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--RFD 461 (682)
T ss_pred ---------ChHH---HHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--hCC
Confidence 2222 23344444321 0123456788888643 57889999 999
Q ss_pred eEEEe-cCCCHHHHH----HHHHHHhcCC---------------------------------CCCccccHHHHHH-----
Q 010809 394 RQVTV-DVPDIRGRT----EILKVHGSNK---------------------------------KFDADVSLDVIAM----- 430 (500)
Q Consensus 394 r~I~v-~~Pd~~eR~----~IL~~~l~~~---------------------------------~l~~dvdl~~la~----- 430 (500)
..+.+ +.|+.+.-+ .++..|.... +.-.+...+.|..
T Consensus 462 Lifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~ 541 (682)
T COG1241 462 LIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEM 541 (682)
T ss_pred eeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHh
Confidence 75543 456554222 2455552111 1101111111111
Q ss_pred h----------CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 431 R----------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 431 ~----------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
+ +-..+.++|+.+++-|-.+|..+-++.|+.+|+++|++-+.
T Consensus 542 Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 542 RKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVD 593 (682)
T ss_pred hhccccccccCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHH
Confidence 1 12367899999999999999999999999999999998654
No 252
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.43 E-value=1.4e-05 Score=78.88 Aligned_cols=186 Identities=22% Similarity=0.217 Sum_probs=117.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEEec-----hhhHHhhhhhh------------hhHHHHHHHHHHh-CCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-----SEFVEMFVGVG------------ASRVRDLFKKAKE-NAP 324 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~---~pfi~is~-----se~~~~~vG~~------------~~~vr~lf~~a~~-~~p 324 (500)
-+.++|+.|||||.+.|++....+ +-.++++. +.+.+.++-+. +..-+.+....++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 378999999999999997766442 23334433 33333332221 1222344444444 446
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC-c---hhhcCCCCcceEEEecC
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL-D---SALLRPGRFDRQVTVDV 400 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L-d---~aLlrpgRfdr~I~v~~ 400 (500)
.++++||.+.+. ...-+.+.-|.+.-++....-.++.++-...-..+ - ..+-. |++-.+++++
T Consensus 133 v~l~vdEah~L~-----------~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~--R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLN-----------DSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQ--RIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhC-----------hhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhh--eEEEEEecCC
Confidence 899999999983 23334444444433333333345555543211100 0 12223 7876789999
Q ss_pred CCHHHHHHHHHHHhcCCCCC----ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 010809 401 PDIRGRTEILKVHGSNKKFD----ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEID 465 (500)
Q Consensus 401 Pd~~eR~~IL~~~l~~~~l~----~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~ 465 (500)
.+.++-..+++.+++..... .+.-+..+...+.| .++-+.++|..|...|...+...|+...++
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 99998899999998776443 33346677888888 788899999999999999999999887654
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.38 E-value=4e-06 Score=91.13 Aligned_cols=222 Identities=18% Similarity=0.251 Sum_probs=126.6
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhh--hCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTA--IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~--~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG 306 (500)
-|-.|.|.+.+|.-+.-.+- ---.++.. ...+---+|+++|.|||||+-+.+++++-+-.-++ +++..-. -.|
T Consensus 343 l~PsIyGhe~VK~GilL~Lf--GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSS--aAG 417 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLF--GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASS--AAG 417 (764)
T ss_pred hCccccchHHHHhhHHHHHh--CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccc--ccc
Confidence 36678899999987653322 22222222 22233347999999999999999999987644333 3332110 011
Q ss_pred hhhhHHHH------HHHH-H-HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCC
Q 010809 307 VGASRVRD------LFKK-A-KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGN 367 (500)
Q Consensus 307 ~~~~~vr~------lf~~-a-~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~-----------~~~ 367 (500)
.+++.+++ .++. | .-....|.+|||+|.+.-+ .+.. +.+.|+.- .-+
T Consensus 418 LTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-----------dqvA---ihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 418 LTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-----------DQVA---IHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ceEEEEecCCCCceeeecCcEEEccCceEEechhcccChH-----------hHHH---HHHHHHhheehheecceEEeec
Confidence 11111111 0100 0 0112358999999999321 1222 33334321 012
Q ss_pred CCeEEEEeeCCCC-------------CCchhhcCCCCcceE-EEecCCCHHHHHHHHHHHhcCCC---------------
Q 010809 368 TGIIVIAATNRAD-------------ILDSALLRPGRFDRQ-VTVDVPDIRGRTEILKVHGSNKK--------------- 418 (500)
Q Consensus 368 ~~viVIaaTN~~~-------------~Ld~aLlrpgRfdr~-I~v~~Pd~~eR~~IL~~~l~~~~--------------- 418 (500)
.+--||||+|+.. .+++++++ |||.. |-++-|++..-..|-++.+....
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e 561 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLE 561 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHH
Confidence 2345788888533 47889999 99974 46677877655554443332110
Q ss_pred -----------CCcccc---HHHHH-------H--------hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 419 -----------FDADVS---LDVIA-------M--------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 419 -----------l~~dvd---l~~la-------~--------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+.|-.. .+.+. . .+-+.+.++|+.+++-+-.+|.-.-++.||.+|+++|++
T Consensus 562 ~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~e 641 (764)
T KOG0480|consen 562 QVRKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVE 641 (764)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHH
Confidence 000000 00010 0 022578899999999999899888889999999999988
Q ss_pred HH
Q 010809 470 RI 471 (500)
Q Consensus 470 ~v 471 (500)
-.
T Consensus 642 Ll 643 (764)
T KOG0480|consen 642 LL 643 (764)
T ss_pred HH
Confidence 43
No 254
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.36 E-value=8.3e-06 Score=89.37 Aligned_cols=223 Identities=22% Similarity=0.279 Sum_probs=119.8
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhC-CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIG-ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGAS 310 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G-~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~ 310 (500)
.|.|+|.+|+.+.-.+---.+. .+..-| .+.--+|||+|.||||||.+.+.+++-+..-. |.++-.- .-+|..+-
T Consensus 430 sIye~edvKkglLLqLfGGt~k-~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~-yTSGkGs--SavGLTay 505 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRK-EDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV-YTSGKGS--SAVGLTAY 505 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcc-cccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce-eecCCcc--chhcceee
Confidence 4666666666554322211111 122222 22223799999999999999999988664322 2332110 00111110
Q ss_pred -----HHHHHHHHH---HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh------cCC--CCCCCeEEEE
Q 010809 311 -----RVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM------DGF--EGNTGIIVIA 374 (500)
Q Consensus 311 -----~vr~lf~~a---~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em------d~~--~~~~~viVIa 374 (500)
..+++.-+. -.....|.+|||+|.+ ++.....|.+.+++= .|+ .-+.+.-|+|
T Consensus 506 Vtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM-----------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLA 574 (804)
T KOG0478|consen 506 VTKDPDTRQLVLESGALVLSDNGICCIDEFDKM-----------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLA 574 (804)
T ss_pred EEecCccceeeeecCcEEEcCCceEEchhhhhh-----------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeee
Confidence 111221111 0112358899999999 222333343333320 111 1134567899
Q ss_pred eeCCCC-------------CCchhhcCCCCcceEE-EecCCCHHHHHHHH----HHHhcC--------------------
Q 010809 375 ATNRAD-------------ILDSALLRPGRFDRQV-TVDVPDIRGRTEIL----KVHGSN-------------------- 416 (500)
Q Consensus 375 aTN~~~-------------~Ld~aLlrpgRfdr~I-~v~~Pd~~eR~~IL----~~~l~~-------------------- 416 (500)
+.|..+ .|++.|++ |||.++ .++.||...-+.|- ..|...
T Consensus 575 aANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~y 652 (804)
T KOG0478|consen 575 AANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRY 652 (804)
T ss_pred eeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHH
Confidence 999532 58899999 999744 56777776333322 222221
Q ss_pred --CCCCc----cccHHHHHH----h----CCC---CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 417 --KKFDA----DVSLDVIAM----R----TPG---FSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 417 --~~l~~----dvdl~~la~----~----t~G---~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
.+..+ +.....++. + ..| -++++++.+.+.+..+|..+....+...|+++|+.=.
T Consensus 653 Ark~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 653 ARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLL 724 (804)
T ss_pred HhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHH
Confidence 11111 111111110 0 011 3578899999999999988889999999999998743
No 255
>PF05729 NACHT: NACHT domain
Probab=98.35 E-value=7.1e-06 Score=74.61 Aligned_cols=140 Identities=18% Similarity=0.232 Sum_probs=74.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc------C---CCEEEEechhhHHh--------h----hhhhhhHHHHHH-HHHHhCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA------G---VPFFSISGSEFVEM--------F----VGVGASRVRDLF-KKAKENA 323 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~------~---~pfi~is~se~~~~--------~----vG~~~~~vr~lf-~~a~~~~ 323 (500)
-++|+|+||+|||++++.++... . .-++++.+.++... + ...........+ .......
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 47999999999999999998754 1 12334444433321 0 011111122212 2234456
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC--CCchhhcCCCCcceEEEecCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVP 401 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~--~Ld~aLlrpgRfdr~I~v~~P 401 (500)
+.+|+||.+|.+...... .........+.+++.. ....++-++.++.... .+...+.. . ..+.++..
T Consensus 82 ~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~liit~r~~~~~~~~~~~~~---~-~~~~l~~~ 150 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ----ALPPGVKLIITSRPRAFPDLRRRLKQ---A-QILELEPF 150 (166)
T ss_pred ceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh----ccCCCCeEEEEEcCChHHHHHHhcCC---C-cEEEECCC
Confidence 789999999999543211 0001122233333332 1123344444443222 12222222 1 47899999
Q ss_pred CHHHHHHHHHHHhcC
Q 010809 402 DIRGRTEILKVHGSN 416 (500)
Q Consensus 402 d~~eR~~IL~~~l~~ 416 (500)
+.++..++++.+++.
T Consensus 151 ~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 151 SEEDIKQYLRKYFSN 165 (166)
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999987753
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.35 E-value=1e-05 Score=80.72 Aligned_cols=121 Identities=17% Similarity=0.146 Sum_probs=82.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC-----EEEE-echhhHH--------hh-h--hhhhhHHHHHHHHHHh---
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-----FFSI-SGSEFVE--------MF-V--GVGASRVRDLFKKAKE--- 321 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~p-----fi~i-s~se~~~--------~~-v--G~~~~~vr~lf~~a~~--- 321 (500)
.+|...||+||+|+||..+|.++|...-+. .-.+ +|..+.. .+ . ..+.+.+|++.+....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 357789999999999999999999865221 1000 1111100 00 0 1234456666655421
Q ss_pred --CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEec
Q 010809 322 --NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 322 --~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~ 399 (500)
....|++||++|.+ ..++.|.||+.++ +++.++++|..|+.++.+.+.+++ |+. .+.++
T Consensus 85 e~~~~KV~II~~ae~m--------------~~~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~S--RCq-~~~~~ 145 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL--------------NKQSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILS--RCV-QYVVL 145 (261)
T ss_pred hcCCCEEEEeccHhhh--------------CHHHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhh--hee-eeecC
Confidence 23579999999998 2457788999888 467789999999999999999999 885 46666
Q ss_pred CC
Q 010809 400 VP 401 (500)
Q Consensus 400 ~P 401 (500)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 65
No 257
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=5.9e-06 Score=83.84 Aligned_cols=122 Identities=12% Similarity=0.141 Sum_probs=82.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH--------h-hhh----hhhhHHHHHHHHHHh----CC
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE--------M-FVG----VGASRVRDLFKKAKE----NA 323 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~--------~-~vG----~~~~~vr~lf~~a~~----~~ 323 (500)
.+.|...||+||+|+||+.+|.++|..+-+.--.-+|..+.. - ..+ .+.+.+|++.+.+.. ..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 356778999999999999999999987643100001110000 0 011 124456666666533 33
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 401 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~P 401 (500)
..|++||++|.+ ..+..|.||+-++ +++.++++|..|+.++.+.|.+++ |+. .+.|+++
T Consensus 96 ~kv~ii~~ad~m--------------t~~AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEADRM--------------TLDAISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRS--RSL-SIHIPME 154 (290)
T ss_pred ceEEEEechhhc--------------CHHHHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHh--cce-EEEccch
Confidence 469999999999 2356788888887 456788999999999999999999 885 5666654
No 258
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.31 E-value=1.7e-05 Score=79.39 Aligned_cols=172 Identities=19% Similarity=0.284 Sum_probs=91.1
Q ss_pred HHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh--cCCC---EEEEech------hhHHhh---hhh
Q 010809 242 DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE--AGVP---FFSISGS------EFVEMF---VGV 307 (500)
Q Consensus 242 ~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e--~~~p---fi~is~s------e~~~~~---vG~ 307 (500)
++.++.+.|.... ...+-|.|+|++|+|||+||+.++.. .... ++.++.+ ++.... .+.
T Consensus 4 ~~~~l~~~L~~~~-------~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 4 EIEKLKDWLLDNS-------NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp HHHHHHHHHHTTT-------TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhCCC-------CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 4555566554421 22446899999999999999999987 3222 2223332 111111 111
Q ss_pred h---------hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 308 G---------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 308 ~---------~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
. .....+.+.......+++|++|+++... .+..+...+..+ ..+..||.||..
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~~~kilvTTR~ 138 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE----------------DLEELREPLPSF--SSGSKILVTTRD 138 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH----------------HH-------HCH--HSS-EEEEEESC
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccc----------------cccccccccccc--cccccccccccc
Confidence 1 1122333333444558999999997651 222233222211 224566667765
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC----CCccccHHHHHHhCCCCcHHHHHHH
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK----FDADVSLDVIAMRTPGFSGADLANL 443 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~----l~~dvdl~~la~~t~G~sgadL~~l 443 (500)
.... .... .-...+.++..+.++-.++|...+.... ...+.....++..+.| .|-.|.-+
T Consensus 139 ~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 139 RSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp GGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 4322 1111 1146889999999999999998876544 1122336788999988 55444433
No 259
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.28 E-value=7.8e-06 Score=97.74 Aligned_cols=177 Identities=19% Similarity=0.296 Sum_probs=102.3
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE---EEEech----
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSISGS---- 298 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pf---i~is~s---- 298 (500)
+...+++++|.++..+++.+++..- ....+-+-|+|++|+||||||+++++....+| ++++..
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 3457899999999998888776431 12234689999999999999999988764332 111110
Q ss_pred ---hh--------------HHhhh----hhh---hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHH
Q 010809 299 ---EF--------------VEMFV----GVG---ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (500)
Q Consensus 299 ---e~--------------~~~~v----G~~---~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (500)
.+ ...+. +.. ...+ ...++.....+.+|++||+|.. ..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~-~~~~~~L~~krvLLVLDdv~~~----------------~~l 311 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHL-GAMEERLKHRKVLIFIDDLDDQ----------------DVL 311 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCH-HHHHHHHhCCeEEEEEeCCCCH----------------HHH
Confidence 00 00000 000 0000 1122223355679999998653 233
Q ss_pred HHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc---cHHHHHHh
Q 010809 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV---SLDVIAMR 431 (500)
Q Consensus 355 ~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv---dl~~la~~ 431 (500)
..+....+.+. .+-.||.||...+ +++....++.+.++.|+.++..+++..++-+....++. -...+++.
T Consensus 312 ~~L~~~~~~~~--~GsrIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 312 DALAGQTQWFG--SGSRIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred HHHHhhCccCC--CCcEEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 44444333332 3445566666533 22222467789999999999999999887554322211 13446667
Q ss_pred CCCCc
Q 010809 432 TPGFS 436 (500)
Q Consensus 432 t~G~s 436 (500)
+.|..
T Consensus 385 c~GLP 389 (1153)
T PLN03210 385 AGNLP 389 (1153)
T ss_pred hCCCc
Confidence 77744
No 260
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.26 E-value=4.7e-06 Score=80.05 Aligned_cols=114 Identities=20% Similarity=0.271 Sum_probs=64.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhH-Hhhhhh----------------------hhhHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFV-EMFVGV----------------------GASRVRD 314 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~-~~~vG~----------------------~~~~vr~ 314 (500)
.....-++++||||+|||+++..++.+ .+.++++++..++. +.+... ....+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQK 88 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHH
Confidence 333445899999999999999998754 36788999887531 111110 0111333
Q ss_pred HHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 315 lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+.+.+....+++|+||-+.++.+....+ ...++.+.+..++..+..+....++.++.+..
T Consensus 89 l~~~~~~~~~~lvVIDSis~l~~~~~~~---~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 89 TSKFIDRDSASLVVVDSFTALYRLELSD---DRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHhhcCccEEEEeCcHHHhHHHhCC---ccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 3344455578999999999986432111 11122333433333333333345566666543
No 261
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.22 E-value=2e-06 Score=80.10 Aligned_cols=59 Identities=24% Similarity=0.421 Sum_probs=36.3
Q ss_pred ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechhh
Q 010809 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSEF 300 (500)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---fi~is~se~ 300 (500)
++|.++..+++...+.... ...++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~~~---------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQ---------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTS---------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHH---------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 5788887777777665211 2235689999999999999999997655322 777776655
No 262
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.19 E-value=7.1e-05 Score=75.50 Aligned_cols=226 Identities=18% Similarity=0.147 Sum_probs=122.4
Q ss_pred cccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhh---
Q 010809 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV--- 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~--- 307 (500)
.+.|+.-+++.+...+.. +.++. .+.|.-+=|+|++||||.++++.+|+..-.- -.-|.++..|+..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~---Gl~S~~V~~fvat~hF 153 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRG---GLRSPFVHHFVATLHF 153 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC------CCCCeEEEecCCCCCchhHHHHHHHHHHHhc---cccchhHHHhhhhccC
Confidence 578888888888877755 55553 3446667789999999999999999965110 0123444444332
Q ss_pred ---------hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEee
Q 010809 308 ---------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAAT 376 (500)
Q Consensus 308 ---------~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--~~~~viVIaaT 376 (500)
..+.-+.+-..+...+.++.++||+|.+ +...-+++.-+|....... ...+-|+|.-+
T Consensus 154 P~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm-----------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLS 222 (344)
T KOG2170|consen 154 PHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL-----------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLS 222 (344)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc-----------CHhHHHHHhhhhccccccccccccceEEEEEc
Confidence 1111223334445667789999999999 5555566666665322111 12346777777
Q ss_pred CCCC-CCc---hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHH--HHHHHHH
Q 010809 377 NRAD-ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANL--LNEAAIL 450 (500)
Q Consensus 377 N~~~-~Ld---~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~l--v~eAa~~ 450 (500)
|.-. .+. -...+.|+--+.+.+..-...-..........+...+..++...+....+ |-+-+=+.+ |-++.+.
T Consensus 223 N~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIP-FLPLek~hV~~C~r~el~ 301 (344)
T KOG2170|consen 223 NAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIP-FLPLEKRHVRSCIRAELR 301 (344)
T ss_pred CCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccC-cCcccHHHHHHHHHHHHH
Confidence 7533 222 12334455444444433333333333332223334455556666666555 444443333 2233322
Q ss_pred HHHcCCCCcCHHHHHHHHHHHHcCcCCCCCC
Q 010809 451 AGRRGKAAISSKEIDDSIDRIVAGMEGTVMT 481 (500)
Q Consensus 451 A~r~~~~~It~~d~~~Ai~~v~~g~~~~~~~ 481 (500)
++| -..+++-+++.++...-=++.....
T Consensus 302 --~rg-~~~d~~~~erva~~l~ffp~~~k~F 329 (344)
T KOG2170|consen 302 --KRG-LAPDQDFVERVANSLSFFPESSKLF 329 (344)
T ss_pred --hcc-cccchHHHHHHHHhhccccccccee
Confidence 233 4466666666666544334443333
No 263
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=4.1e-05 Score=77.92 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=84.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCC-------CEEEE-ech--------hhHHh-hhh--hhhhHHHHHHHHHHh-
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSI-SGS--------EFVEM-FVG--VGASRVRDLFKKAKE- 321 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~-------pfi~i-s~s--------e~~~~-~vG--~~~~~vr~lf~~a~~- 321 (500)
+.|...||+|| +||+++|+++|..+-+ |.-.+ +|. |+..- ..| .+.+.+|++.+.+..
T Consensus 22 rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~ 99 (290)
T PRK07276 22 RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQS 99 (290)
T ss_pred CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhC
Confidence 56678999996 6899999999986532 11100 111 11000 001 123567777666533
Q ss_pred ---CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEe
Q 010809 322 ---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV 398 (500)
Q Consensus 322 ---~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v 398 (500)
....|++||++|.+ .....|.||+.++. ++.++++|..|+.++.+-|.+++ |+. .+.|
T Consensus 100 p~~~~~kV~II~~ad~m--------------~~~AaNaLLKtLEE--Pp~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f 160 (290)
T PRK07276 100 GYEGKQQVFIIKDADKM--------------HVNAANSLLKVIEE--PQSEIYIFLLTNDENKVLPTIKS--RTQ-IFHF 160 (290)
T ss_pred cccCCcEEEEeehhhhc--------------CHHHHHHHHHHhcC--CCCCeEEEEEECChhhCchHHHH--cce-eeeC
Confidence 33479999999999 24567889998884 55678899999999999999999 884 7777
Q ss_pred cCCCHHHHHHHHH
Q 010809 399 DVPDIRGRTEILK 411 (500)
Q Consensus 399 ~~Pd~~eR~~IL~ 411 (500)
+. +.+...+++.
T Consensus 161 ~~-~~~~~~~~L~ 172 (290)
T PRK07276 161 PK-NEAYLIQLLE 172 (290)
T ss_pred CC-cHHHHHHHHH
Confidence 65 4554445554
No 264
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.17 E-value=9e-05 Score=75.80 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=88.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC-----------C--EEEEechhhHHhhhhhhhhHHHHHHHHHHh-----CCC
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV-----------P--FFSISGSEFVEMFVGVGASRVRDLFKKAKE-----NAP 324 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~-----------p--fi~is~se~~~~~vG~~~~~vr~lf~~a~~-----~~p 324 (500)
.+...||+|+.|.||+.+|++++..+-+ | +..++... . ..+.+.++++.+.+.. +..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~--~i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---K--DLSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---C--cCCHHHHHHHHHHhccCCcccCCc
Confidence 4557889999999999999999887622 2 22222000 0 0122456666665521 245
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHH
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIR 404 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~ 404 (500)
.|++||++|.+. .+..|.||..++. +++.+++|..|+.++.+-+.+++ |+. ++.+.+|+.+
T Consensus 92 KvvII~~~e~m~--------------~~a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~S--Rc~-~~~f~~l~~~ 152 (299)
T PRK07132 92 KILIIKNIEKTS--------------NSLLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVS--RCQ-VFNVKEPDQQ 152 (299)
T ss_pred eEEEEecccccC--------------HHHHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHh--CeE-EEECCCCCHH
Confidence 799999998882 3466788888874 45667777777788888899988 884 7899999988
Q ss_pred HHHHHHHH
Q 010809 405 GRTEILKV 412 (500)
Q Consensus 405 eR~~IL~~ 412 (500)
+..+.|..
T Consensus 153 ~l~~~l~~ 160 (299)
T PRK07132 153 KILAKLLS 160 (299)
T ss_pred HHHHHHHH
Confidence 77666654
No 265
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.15 E-value=8e-06 Score=86.81 Aligned_cols=220 Identities=23% Similarity=0.332 Sum_probs=126.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCC--ceEEEEcCCCChHHHHHHHHHHhcCCCEEEE-echhhHHhhhhhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIP--KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI-SGSEFVEMFVGVG 308 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p--~gvLL~GppGTGKT~LAralA~e~~~pfi~i-s~se~~~~~vG~~ 308 (500)
+|.|.+++|+.|.-++---- .+-..-|.++. -+|+|.|.||+.|+-|.+++.+-+-.-.+.. .+|. =+|.+
T Consensus 343 EIyGheDVKKaLLLlLVGgv--d~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVGLT 416 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGV--DKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVGLT 416 (721)
T ss_pred hhccchHHHHHHHHHhhCCC--CCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccccc
Confidence 68899999998876654322 22122344443 3799999999999999999988765444432 1111 12333
Q ss_pred hhHHHHHHHH-------H-HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH----hc--CCC--CCCCeEE
Q 010809 309 ASRVRDLFKK-------A-KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----MD--GFE--GNTGIIV 372 (500)
Q Consensus 309 ~~~vr~lf~~-------a-~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e----md--~~~--~~~~viV 372 (500)
++..++-... | --....|.+|||+|.+.... ...+.+.+.+ +. |+. -+.+.-|
T Consensus 417 AAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~D-----------RtAIHEVMEQQTISIaKAGI~TtLNAR~sI 485 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESD-----------RTAIHEVMEQQTISIAKAGINTTLNARTSI 485 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhh-----------hHHHHHHHHhhhhhhhhhccccchhhhHHh
Confidence 3322221100 0 00113588999999984321 1122222111 11 111 1335678
Q ss_pred EEeeCCCC-------------CCchhhcCCCCcceE-EEecCCCHHHHHHHHHH----HhcCC--C-----CCcc-----
Q 010809 373 IAATNRAD-------------ILDSALLRPGRFDRQ-VTVDVPDIRGRTEILKV----HGSNK--K-----FDAD----- 422 (500)
Q Consensus 373 IaaTN~~~-------------~Ld~aLlrpgRfdr~-I~v~~Pd~~eR~~IL~~----~l~~~--~-----l~~d----- 422 (500)
+||.|+.. .|+.||++ |||.. +-.+.||.+.-..+-++ |.-.. + ++++
T Consensus 486 LaAANPayGRYnprrs~e~NI~LPaALLS--RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~y 563 (721)
T KOG0482|consen 486 LAAANPAYGRYNPRRSPEQNINLPAALLS--RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRY 563 (721)
T ss_pred hhhcCccccccCcccChhHhcCCcHHHHH--hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHH
Confidence 88888522 58999999 99974 45567877665554442 22111 1 1111
Q ss_pred ----------cc---HHHH----------HH--hC-CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 423 ----------VS---LDVI----------AM--RT-PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 423 ----------vd---l~~l----------a~--~t-~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
+. .+.+ ++ .. .--|++-|-.+++-+..+|..+-...|..+|+++|+.=
T Consensus 564 I~~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRL 637 (721)
T KOG0482|consen 564 ISLAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRL 637 (721)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 00 0001 00 00 12368888899999999999999999999999999984
No 266
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.12 E-value=7e-06 Score=84.35 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=66.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCE-EEEechhhHHh-------hhhhhhhHHHHHHHHHHhCCCeEEEEcCc
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-FSISGSEFVEM-------FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pf-i~is~se~~~~-------~vG~~~~~vr~lf~~a~~~~p~IIfIDEI 332 (500)
..+|+|++|||+-|.|||+|.-.....+-.+- ..+...+|... ..|.. .-+..+-+...+ ...+|+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~-~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQT-DPLPPIADELAA-ETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCC-CccHHHHHHHHh-cCCEEEeeee
Confidence 34789999999999999999999988775433 33444444432 12222 112222222212 2359999998
Q ss_pred chhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-CCCCc
Q 010809 333 DAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILD 383 (500)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-~~~Ld 383 (500)
+-- +-.....+..|+.++- ..||++++|+|. |+.|-
T Consensus 140 ~Vt-----------DI~DAMiL~rL~~~Lf----~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 140 EVT-----------DIADAMILGRLLEALF----ARGVVLVATSNTAPDNLY 176 (367)
T ss_pred eec-----------ChHHHHHHHHHHHHHH----HCCcEEEEeCCCChHHhc
Confidence 652 2223456777887764 458999999996 55443
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.12 E-value=2e-05 Score=84.99 Aligned_cols=78 Identities=24% Similarity=0.381 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh------hh--------hhhHHHHHHHHHHhCC
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v------G~--------~~~~vr~lf~~a~~~~ 323 (500)
.....-++|+|+||+|||+|+..+|... +.+++|+++.+-.+... |. ....+..+++..++..
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 3344458999999999999999998754 67899999876554331 11 1234566777777778
Q ss_pred CeEEEEcCcchhhhc
Q 010809 324 PCIVFVDEIDAVGRQ 338 (500)
Q Consensus 324 p~IIfIDEID~l~~~ 338 (500)
|.+|+||++..+...
T Consensus 157 ~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 157 PDLVVIDSIQTMYSP 171 (446)
T ss_pred CCEEEEechhhhccc
Confidence 999999999998643
No 268
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.11 E-value=2.6e-05 Score=73.02 Aligned_cols=102 Identities=23% Similarity=0.297 Sum_probs=60.7
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhh------hh-----------------------hhh----
Q 010809 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFV------GV-----------------------GAS---- 310 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~v------G~-----------------------~~~---- 310 (500)
++++||||||||+++..++.+ .+.++++++..+-.+.+. |. +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 689999999999999988654 377888887653332210 10 000
Q ss_pred -HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 311 -RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 311 -~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
....+...+....|.+|+|||+..+... ........+..++..+.. .++.+|.++...
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~~-------~~~~~~~~i~~l~~~l~~----~g~tvi~v~~~~ 140 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLLM-------EQSTARLEIRRLLFALKR----FGVTTLLTSEQS 140 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhhc-------ChHHHHHHHHHHHHHHHH----CCCEEEEEeccc
Confidence 0133344445567899999999887532 112233445555555542 245566655543
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.06 E-value=2.6e-05 Score=82.09 Aligned_cols=78 Identities=27% Similarity=0.410 Sum_probs=55.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh------hh--------hhhHHHHHHHHHHhCC
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v------G~--------~~~~vr~lf~~a~~~~ 323 (500)
.....-++|+|+||+|||+++..+|... +.+++|+++.+-.+... |. ....+..+++.+....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 3334458999999999999999998754 46899998765443221 11 1223566777777778
Q ss_pred CeEEEEcCcchhhhc
Q 010809 324 PCIVFVDEIDAVGRQ 338 (500)
Q Consensus 324 p~IIfIDEID~l~~~ 338 (500)
|.+|+||+|..+...
T Consensus 159 ~~lVVIDSIq~l~~~ 173 (372)
T cd01121 159 PDLVIIDSIQTVYSS 173 (372)
T ss_pred CcEEEEcchHHhhcc
Confidence 999999999998643
No 270
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.01 E-value=3.7e-05 Score=88.28 Aligned_cols=211 Identities=17% Similarity=0.204 Sum_probs=129.6
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChh--hhhhhCCCCC-c-eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPE--RFTAIGARIP-K-GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~--~~~~~G~~~p-~-gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
..|.+.+.+....++.|....-..+.+.++..++++ .|..-+.... + .++++||||+|||+.+.++|.+.+..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 467778888888899888777777766666554432 1221111111 1 36999999999999999999999999999
Q ss_pred EechhhHHhhh-----hh--hhhHHHHHHH---HH--HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 295 ISGSEFVEMFV-----GV--GASRVRDLFK---KA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 295 is~se~~~~~v-----G~--~~~~vr~lf~---~a--~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
.+.++...... +. +...+...|. .. ....--||++||+|.+.. .+...-..+.++..
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~--------~dRg~v~~l~~l~~--- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG--------EDRGGVSKLSSLCK--- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc--------hhhhhHHHHHHHHH---
Confidence 99886654321 11 1122333330 00 011123899999999853 12223345555555
Q ss_pred CCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 010809 363 GFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (500)
Q Consensus 363 ~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~ 441 (500)
....-+|+++|..+......+. |.+.-+.|+.|+...+..-+...+....+. .+-.++.+...+ ++||+
T Consensus 457 ----ks~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR 526 (871)
T KOG1968|consen 457 ----KSSRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIR 526 (871)
T ss_pred ----hccCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHH
Confidence 2334677888876654443333 443468999999998777666655443322 233466666655 55888
Q ss_pred HHHHHHHHH
Q 010809 442 NLLNEAAIL 450 (500)
Q Consensus 442 ~lv~eAa~~ 450 (500)
++++.-...
T Consensus 527 ~~i~~lq~~ 535 (871)
T KOG1968|consen 527 QIIMQLQFW 535 (871)
T ss_pred HHHHHHhhh
Confidence 877765554
No 271
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.98 E-value=9.1e-05 Score=78.54 Aligned_cols=75 Identities=15% Similarity=0.206 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEechhhHHhhhhhhhhHHH
Q 010809 238 EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVEMFVGVGASRVR 313 (500)
Q Consensus 238 e~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e----~~~pfi~is~se~~~~~vG~~~~~vr 313 (500)
.....|..++.++.... ++++.||+|||||+++.+++.. .| -.++...++.....
T Consensus 194 ~k~~~L~rl~~fve~~~-----------Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~------- 252 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNY-----------NLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIST------- 252 (449)
T ss_pred HHHHHHHhhHHHHhcCC-----------cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHH-------
Confidence 33444555556665443 8999999999999999998776 23 33344444332111
Q ss_pred HHHHHHHhCCCeEEEEcCcchh
Q 010809 314 DLFKKAKENAPCIVFVDEIDAV 335 (500)
Q Consensus 314 ~lf~~a~~~~p~IIfIDEID~l 335 (500)
..+.. -....+|+|||+..+
T Consensus 253 ~~lg~--v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 253 RQIGL--VGRWDVVAFDEVATL 272 (449)
T ss_pred HHHhh--hccCCEEEEEcCCCC
Confidence 11111 234579999999876
No 272
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.96 E-value=4.9e-05 Score=73.97 Aligned_cols=115 Identities=22% Similarity=0.284 Sum_probs=62.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH----Hhhhhh-------------------hhhHHH
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFVGV-------------------GASRVR 313 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~----~~~vG~-------------------~~~~vr 313 (500)
|.+...-++++||||+|||+++..+|.+. +.+++++++..+. ...... ....++
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 33444458999999999999999998643 7888999887221 111110 001112
Q ss_pred HHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 314 ~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.+..... ..+++|+||-+.++.+..-.+ .....+..+.+.+++..+..+....++.++.+.
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~~~~~-~~~~~~~~~~l~~~l~~L~~~a~~~~v~vi~tn 159 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRLELED-EEDNSKLNRELGRQLTHLLKLARKHDLAVVITN 159 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 2222122 578899999999986432110 011223334444444333322223455666553
No 273
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.96 E-value=6.1e-05 Score=78.51 Aligned_cols=160 Identities=21% Similarity=0.288 Sum_probs=93.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE---EEechhhHHhh--------hhhhh-----------hHHHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF---SISGSEFVEMF--------VGVGA-----------SRVRDLFKK 318 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi---~is~se~~~~~--------vG~~~-----------~~vr~lf~~ 318 (500)
..+|+|++|||.-|||||+|.-.+....-. .. .+...+|+... -..++ .-+.-+-++
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~e 189 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADE 189 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHH
Confidence 456999999999999999999988754421 11 22233343211 00000 112222222
Q ss_pred HHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC-CCCCchhhcCCCCcceEEE
Q 010809 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR-ADILDSALLRPGRFDRQVT 397 (500)
Q Consensus 319 a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~-~~~Ld~aLlrpgRfdr~I~ 397 (500)
.... -++|++||+... +-...-+|++|...+- +.|++++||+|+ |+.|...-+. |...
T Consensus 190 Ia~e-a~lLCFDEfQVT-----------DVADAmiL~rLf~~Lf----~~GvVlvATSNR~P~dLYknGlQ-----R~~F 248 (467)
T KOG2383|consen 190 IAEE-AILLCFDEFQVT-----------DVADAMILKRLFEHLF----KNGVVLVATSNRAPEDLYKNGLQ-----RENF 248 (467)
T ss_pred Hhhh-ceeeeechhhhh-----------hHHHHHHHHHHHHHHH----hCCeEEEEeCCCChHHHhhcchh-----hhhh
Confidence 2222 479999999664 2223456777776653 358999999998 5555443333 2333
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCC-C--CcH-HHHHHHHHHHH
Q 010809 398 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTP-G--FSG-ADLANLLNEAA 448 (500)
Q Consensus 398 v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~-G--~sg-adL~~lv~eAa 448 (500)
+| -..+|+.++.-..+...+|....+.... + |.+ .|...++++-.
T Consensus 249 ~P------fI~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~~l~~~f 297 (467)
T KOG2383|consen 249 IP------FIALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVETVLKEWF 297 (467)
T ss_pred hh------HHHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHHHHHHHH
Confidence 32 2357788888778888888874443221 1 223 37777777665
No 274
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.96 E-value=3.1e-05 Score=75.74 Aligned_cols=73 Identities=25% Similarity=0.271 Sum_probs=41.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH-H--h---h----hhhhhhHHHHHHHHHH--hCCCeEEEEc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-E--M---F----VGVGASRVRDLFKKAK--ENAPCIVFVD 330 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~-~--~---~----vG~~~~~vr~lf~~a~--~~~p~IIfID 330 (500)
.|..+||||+||+|||++|+.+++. ..++..+++.-. . . . .....+.+.+.+..+. ...+.+|+||
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVID 88 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVID 88 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEe
Confidence 4667999999999999999999742 222333322100 0 0 0 0001122333333332 2346799999
Q ss_pred Ccchhhh
Q 010809 331 EIDAVGR 337 (500)
Q Consensus 331 EID~l~~ 337 (500)
.++.+..
T Consensus 89 sI~~l~~ 95 (220)
T TIGR01618 89 NISALQN 95 (220)
T ss_pred cHHHHHH
Confidence 9999855
No 275
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.91 E-value=3e-05 Score=67.08 Aligned_cols=23 Identities=43% Similarity=0.764 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~ 289 (500)
|+|+||||+|||++|+.+|..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999987653
No 276
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00013 Score=83.42 Aligned_cols=199 Identities=25% Similarity=0.318 Sum_probs=121.2
Q ss_pred cccccCC-hHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEech
Q 010809 230 FDDVAGV-DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGS 298 (500)
Q Consensus 230 f~dv~G~-de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~is~s 298 (500)
++-++|. ++..+ .+++-|.... .++-+|+|.||+|||.++.-+|... +..++.++..
T Consensus 185 ldPvigr~deeir---Rvi~iL~Rrt---------k~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIR---RVIEILSRKT---------KNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHH---HHHHHHhccC---------CCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 5677776 44444 4444433222 2478999999999999999998854 3455666665
Q ss_pred hhH--HhhhhhhhhHHHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 299 EFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 299 e~~--~~~vG~~~~~vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.++ .++.|..+.+++.+.+++. .....||||||++.+...... .......| +|..+- .+.++-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~------~~~~d~~n-lLkp~L---~rg~l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN------YGAIDAAN-LLKPLL---ARGGLWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc------chHHHHHH-hhHHHH---hcCCeEEEec
Confidence 443 3566778889999999887 445679999999999654322 11222222 222221 1445888887
Q ss_pred eCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCC------C--ccccHHHHH--HhCCCCcHHHH
Q 010809 376 TNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKF------D--ADVSLDVIA--MRTPGFSGADL 440 (500)
Q Consensus 376 TN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l------~--~dvdl~~la--~~t~G~sgadL 440 (500)
|...+ .-||++-+ ||+ .+.++.|+..+-..||.....+... . ..+....++ ..+.-|-+.-.
T Consensus 323 tT~e~Y~k~iekdPalEr--rw~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~a 399 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALER--RWQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCA 399 (898)
T ss_pred ccHHHHHHHHhhCcchhh--Ccc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhc
Confidence 76322 35899999 998 7789999987766666654433111 1 111111222 12233344455
Q ss_pred HHHHHHHHHHHHH
Q 010809 441 ANLLNEAAILAGR 453 (500)
Q Consensus 441 ~~lv~eAa~~A~r 453 (500)
..++++|+.....
T Consensus 400 idl~dEa~a~~~~ 412 (898)
T KOG1051|consen 400 IDLEDEAAALVKS 412 (898)
T ss_pred ccHHHHHHHHHhh
Confidence 6778887765543
No 277
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.86 E-value=0.0002 Score=70.48 Aligned_cols=108 Identities=14% Similarity=0.217 Sum_probs=60.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhhhh-------------------------------
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV------------------------------- 307 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~vG~------------------------------- 307 (500)
+...-+++.||||||||+++..++.. .+.++++++..+-.+.+...
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 33446899999999999998655442 36788888765322211000
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 308 ~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
....+..+........|.+++|||+-.+.... .+....+.+.+++..+.. . +..++.+++..
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~------~d~~~~~~l~~~l~~l~~---~-g~tvi~t~~~~ 163 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLISND------ASEVAVNDLMAFFKRISS---L-NKVIILTANPK 163 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHhcCC------cchHHHHHHHHHHHHHHh---C-CCEEEEEeccc
Confidence 01223334444444568899999998864210 111222334455554432 2 34666666644
No 278
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.85 E-value=7.9e-05 Score=81.10 Aligned_cols=227 Identities=21% Similarity=0.256 Sum_probs=119.6
Q ss_pred cccCChHHHHHHHHHHHH--hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhh
Q 010809 232 DVAGVDEAKQDFMEVVEF--LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~--l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~ 309 (500)
.|.|.+.+|..+--.+-- -+++.- +...+---+|||+|.|||||+-+.|.+++-....++..-.. ..-+|.++
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~--khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa 524 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGG--KHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTA 524 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCC--CceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeE
Confidence 466777777665443322 222221 01112223799999999999999999999877666642110 00112111
Q ss_pred hHHHH-----HHHHH--H-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHH-----HHHHhcCCCCCCCeEEEEee
Q 010809 310 SRVRD-----LFKKA--K-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQ-----LLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 310 ~~vr~-----lf~~a--~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~-----LL~emd~~~~~~~viVIaaT 376 (500)
...++ .--++ . -....|.+|||+|.+-.+... +-++..+|.--. +.+.+ +....||||+
T Consensus 525 ~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRt---SIHEAMEQQSISISKAGIVtsL-----qArctvIAAa 596 (854)
T KOG0477|consen 525 YVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRT---SIHEAMEQQSISISKAGIVTSL-----QARCTVIAAA 596 (854)
T ss_pred EEeeCCccceeeeccCeEEEccCceEEeehhhhhcccccc---hHHHHHHhcchhhhhhhHHHHH-----Hhhhhhheec
Confidence 11111 00000 0 011348899999999432211 112222211100 12212 2356799999
Q ss_pred CCCC-------------CCchhhcCCCCcceEEEec---CCCHHHHHH--HHHHHhcCCCCC------------------
Q 010809 377 NRAD-------------ILDSALLRPGRFDRQVTVD---VPDIRGRTE--ILKVHGSNKKFD------------------ 420 (500)
Q Consensus 377 N~~~-------------~Ld~aLlrpgRfdr~I~v~---~Pd~~eR~~--IL~~~l~~~~l~------------------ 420 (500)
|... .|-+.+++ |||-...+. .|-.+++.. ++..|.+..+-.
T Consensus 597 nPigGRY~~s~tFaqNV~ltePIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~i 674 (854)
T KOG0477|consen 597 NPIGGRYNPSLTFAQNVDLTEPILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPI 674 (854)
T ss_pred CCCCCccCCccchhhccccccchhh--hcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccC
Confidence 8611 45667888 999733332 233333332 444444322211
Q ss_pred --------------------ccccHHHHHHh---------CCC---CcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 421 --------------------ADVSLDVIAMR---------TPG---FSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 421 --------------------~dvdl~~la~~---------t~G---~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.+.|.+.++.. ..| .+.+.|+.+++-+..+|...-++.|+.+|+..|+
T Consensus 675 pq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI 754 (854)
T KOG0477|consen 675 PQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAI 754 (854)
T ss_pred hHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHH
Confidence 11222222221 112 3668899999999999988888999999999998
Q ss_pred HHHHc
Q 010809 469 DRIVA 473 (500)
Q Consensus 469 ~~v~~ 473 (500)
.-++.
T Consensus 755 ~v~ld 759 (854)
T KOG0477|consen 755 RVMLD 759 (854)
T ss_pred HHHHH
Confidence 86543
No 279
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0017 Score=67.42 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=90.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------hhhh----h--------------------hhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MFVG----V--------------------GASR 311 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~-------~~vG----~--------------------~~~~ 311 (500)
-+.+.||..+|||+|...+...+ +...+++++..+.. .|.. . ....
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~ 112 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKIS 112 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhh
Confidence 58999999999999999886544 78888888765422 1100 0 1112
Q ss_pred HHHHHHHH---HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC---CCCCCeEEEEeeCC-CCCCch
Q 010809 312 VRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF---EGNTGIIVIAATNR-ADILDS 384 (500)
Q Consensus 312 vr~lf~~a---~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~---~~~~~viVIaaTN~-~~~Ld~ 384 (500)
....|++. ....|-||+|||+|.+.... ......+..|-...+.- .....+.+|.+... ......
T Consensus 113 ~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~--------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~ 184 (331)
T PF14516_consen 113 CTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP--------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILD 184 (331)
T ss_pred HHHHHHHHHHhcCCCCEEEEEechhhhccCc--------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccC
Confidence 33344432 22468899999999995321 11223333322222211 11123333333322 222211
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
.-.+|=-+...+.++.-+.++-..+++.|-.. +.... ++.+-..|.| -|.=+..+|.
T Consensus 185 ~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~~~~~-~~~l~~~tgG-hP~Lv~~~~~ 241 (331)
T PF14516_consen 185 INQSPFNIGQPIELPDFTPEEVQELAQRYGLE--FSQEQ-LEQLMDWTGG-HPYLVQKACY 241 (331)
T ss_pred CCCCCcccccceeCCCCCHHHHHHHHHhhhcc--CCHHH-HHHHHHHHCC-CHHHHHHHHH
Confidence 12344334446778888899988888876332 33333 7777777777 3433333333
No 280
>PHA00729 NTP-binding motif containing protein
Probab=97.83 E-value=3.2e-05 Score=75.76 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~ 289 (500)
+++|+|+||||||+||.++|.+++
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 799999999999999999999864
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.82 E-value=0.00012 Score=67.72 Aligned_cols=26 Identities=35% Similarity=0.594 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+..++++|+||+|||+++..++..+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHH
Confidence 45579999999999999999999865
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.81 E-value=0.00011 Score=72.01 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=32.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEF 300 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~ 300 (500)
|.+.+..++++|+||+|||+++..++.+ .+.++++++.++-
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 4445556899999999999999999654 3778888877543
No 283
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.80 E-value=0.00012 Score=75.54 Aligned_cols=116 Identities=21% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh----hh------------hhhhHHHHHHHHHHh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VG------------VGASRVRDLFKKAKE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~----vG------------~~~~~vr~lf~~a~~ 321 (500)
.+...-++++||||||||+||..++.++ +.+++++++.+..+.. .| ..+..+..+....+.
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~ 131 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRS 131 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 3334468899999999999988875543 6788888876533210 11 111122222223345
Q ss_pred CCCeEEEEcCcchhhhccCC-C-CCCC-ChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 322 NAPCIVFVDEIDAVGRQRGT-G-IGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~~r~~-~-~~~~-~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
..+.+|+||-+.++.++..- + .+.. .....+.+.+.+..+...-...++.+|.+.
T Consensus 132 ~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tN 189 (321)
T TIGR02012 132 GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFIN 189 (321)
T ss_pred cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 67899999999998753211 1 1111 112223444544444444345566666664
No 284
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.80 E-value=7.8e-05 Score=68.75 Aligned_cols=40 Identities=23% Similarity=0.432 Sum_probs=32.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
.+..++|+|+||||||++|+++|+.++.+++. ..++.+..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d--~d~~~~~~ 42 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID--TDHLIEAR 42 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHHH
Confidence 45689999999999999999999999998885 44444443
No 285
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.79 E-value=0.00021 Score=73.17 Aligned_cols=160 Identities=21% Similarity=0.368 Sum_probs=96.8
Q ss_pred cccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHH---HHhcCCCEEEEechhhHHh----
Q 010809 232 DVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI---AGEAGVPFFSISGSEFVEM---- 303 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAral---A~e~~~pfi~is~se~~~~---- 303 (500)
.+.|.....+.+.+++.. +-..+ ...+++.||.|+|||.+.... +.+.+-.|+.+....+...
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 456777777778777765 22222 347999999999999887655 3366777776654433211
Q ss_pred -----------------hhhhhhhHHHHHHHHHHhC-----CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh
Q 010809 304 -----------------FVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (500)
Q Consensus 304 -----------------~vG~~~~~vr~lf~~a~~~-----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em 361 (500)
..|.....+..++...+.. .+.|.++||||..++. .++..+..|+.--
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------~rQtllYnlfDis 165 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc----------hhhHHHHHHHHHH
Confidence 1222333444444444332 2334556799998533 2344445555433
Q ss_pred cCCCCCCCeEEEEeeCCCCC---CchhhcCCCCcceE-EEecCC-CHHHHHHHHHHHh
Q 010809 362 DGFEGNTGIIVIAATNRADI---LDSALLRPGRFDRQ-VTVDVP-DIRGRTEILKVHG 414 (500)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~---Ld~aLlrpgRfdr~-I~v~~P-d~~eR~~IL~~~l 414 (500)
. .....+.||+.|.+.+. |.....+ ||... |+++++ ...+-.++++..+
T Consensus 166 q--s~r~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 166 Q--SARAPICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred h--hcCCCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 2 23456888888887664 5566777 99874 555443 5677778887766
No 286
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.78 E-value=0.00023 Score=68.87 Aligned_cols=38 Identities=34% Similarity=0.399 Sum_probs=30.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.....-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3444458999999999999999998654 6788888764
No 287
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.78 E-value=2.9e-05 Score=84.89 Aligned_cols=63 Identities=22% Similarity=0.451 Sum_probs=45.3
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEec
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~ 297 (500)
-|+|+.|++++++.+.+.+.... ..++. ....++|.||||+|||+||+.+|+.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa-----~gl~~-~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAA-----QGLEE-KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHH-----HhcCC-CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 48899999999998877663210 01111 12368999999999999999999865 347776655
No 288
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.77 E-value=0.00021 Score=77.28 Aligned_cols=77 Identities=21% Similarity=0.331 Sum_probs=54.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh------hh--------hhhHHHHHHHHHHhCC
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV--------GASRVRDLFKKAKENA 323 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v------G~--------~~~~vr~lf~~a~~~~ 323 (500)
.....-++|.|+||+|||+|+..+|... +.+++|+++.+-.+... |. .+..+..+.+.+.+..
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~ 170 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEEN 170 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcC
Confidence 3334458999999999999999997754 46889998865544321 11 1123455666667778
Q ss_pred CeEEEEcCcchhhh
Q 010809 324 PCIVFVDEIDAVGR 337 (500)
Q Consensus 324 p~IIfIDEID~l~~ 337 (500)
|.+|+||.|..+..
T Consensus 171 ~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 171 PQACVIDSIQTLYS 184 (454)
T ss_pred CcEEEEecchhhcc
Confidence 99999999999854
No 289
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00032 Score=74.66 Aligned_cols=123 Identities=18% Similarity=0.208 Sum_probs=75.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGG 345 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~ 345 (500)
.++++||.++|||++++.+.....-.+++++..|........ ......+..+.....+.||||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCc----------
Confidence 689999999999999998888775557777666654432221 11222222232224479999999987
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHH
Q 010809 346 GNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (500)
Q Consensus 346 ~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~ 408 (500)
++.+..+..+..... ..+++.+++...-....+-.-+||. ..+.+.+.+..|...
T Consensus 107 --~~W~~~lk~l~d~~~-----~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 107 --PDWERALKYLYDRGN-----LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred --hhHHHHHHHHHcccc-----ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 345666776665321 1344444333222222333346796 578888889988865
No 290
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=6.2e-05 Score=70.45 Aligned_cols=32 Identities=25% Similarity=0.641 Sum_probs=29.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.|+++||||+||||+|+.++..++.|++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 48999999999999999999999999988764
No 291
>PRK13949 shikimate kinase; Provisional
Probab=97.70 E-value=0.00033 Score=65.68 Aligned_cols=31 Identities=45% Similarity=0.732 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
.++|+|+||+|||++++.+|+.++.+|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5999999999999999999999999988755
No 292
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.68 E-value=3.3e-05 Score=67.24 Aligned_cols=30 Identities=43% Similarity=0.904 Sum_probs=26.6
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
++|.||||+||||+|+.+|+.++.+++.++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d 31 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMD 31 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEec
Confidence 789999999999999999999998776543
No 293
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.68 E-value=0.00017 Score=72.73 Aligned_cols=113 Identities=26% Similarity=0.459 Sum_probs=65.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC----------CCEEEEe-chhhHHhhhhh-------------hhhHHHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG----------VPFFSIS-GSEFVEMFVGV-------------GASRVRDLFKKAK 320 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~----------~pfi~is-~se~~~~~vG~-------------~~~~vr~lf~~a~ 320 (500)
+++++.||+|+|||++.+++++... .++..++ ..++...+.+. +......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 4899999999999999999999763 2222222 12332211110 1122344666667
Q ss_pred hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchh--------hcCCCCc
Q 010809 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSA--------LLRPGRF 392 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~a--------LlrpgRf 392 (500)
...|.+|++||+.. .+.+..++..+. .+..+|+++...+. ... |+..+-|
T Consensus 192 ~~~P~villDE~~~----------------~e~~~~l~~~~~-----~G~~vI~ttH~~~~-~~~~~r~~~~~l~~~~~~ 249 (270)
T TIGR02858 192 SMSPDVIVVDEIGR----------------EEDVEALLEALH-----AGVSIIATAHGRDV-EDLYKRPVFKELIENEAF 249 (270)
T ss_pred hCCCCEEEEeCCCc----------------HHHHHHHHHHHh-----CCCEEEEEechhHH-HHHHhChHHHHHHhcCce
Confidence 68899999999621 123444555442 35678888875332 222 2233457
Q ss_pred ceEEEec
Q 010809 393 DRQVTVD 399 (500)
Q Consensus 393 dr~I~v~ 399 (500)
++.+.+.
T Consensus 250 ~r~i~L~ 256 (270)
T TIGR02858 250 ERYVVLS 256 (270)
T ss_pred EEEEEEe
Confidence 7766663
No 294
>PRK04296 thymidine kinase; Provisional
Probab=97.68 E-value=0.0002 Score=68.35 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=42.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech----hhHH---hhhhhh-----hhHHHHHHHHHH--hCCCeEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVE---MFVGVG-----ASRVRDLFKKAK--ENAPCIVF 328 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s----e~~~---~~vG~~-----~~~vr~lf~~a~--~~~p~IIf 328 (500)
-.+++||||+|||+++..++.++ +..++.+..+ .... .-.|.. .....++++.++ ...+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 47899999999999998887654 5566656431 1100 001110 122344554443 34567999
Q ss_pred EcCcchh
Q 010809 329 VDEIDAV 335 (500)
Q Consensus 329 IDEID~l 335 (500)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999776
No 295
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.67 E-value=0.0016 Score=66.54 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC---C------------Cchhhc
Q 010809 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD---I------------LDSALL 387 (500)
Q Consensus 323 ~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~---~------------Ld~aLl 387 (500)
.+-||||||+|.+- .++..+.+. .+.-+-..+++++|.+.++.. . .....+
T Consensus 172 ~~iViiIDdLDR~~----------~~~i~~~l~----~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yL 237 (325)
T PF07693_consen 172 KRIVIIIDDLDRCS----------PEEIVELLE----AIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYL 237 (325)
T ss_pred ceEEEEEcchhcCC----------cHHHHHHHH----HHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHH
Confidence 46799999999982 223333333 333333347788888876411 0 111112
Q ss_pred CCCCcceEEEecCCCHHHHHHHHHHHhc
Q 010809 388 RPGRFDRQVTVDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 388 rpgRfdr~I~v~~Pd~~eR~~IL~~~l~ 415 (500)
. --|+..+.+|.|+..+..+++...+.
T Consensus 238 e-Kiiq~~~~lP~~~~~~~~~~~~~~~~ 264 (325)
T PF07693_consen 238 E-KIIQVPFSLPPPSPSDLERYLNELLE 264 (325)
T ss_pred H-hhcCeEEEeCCCCHHHHHHHHHHHHH
Confidence 1 05677899999999988888877653
No 296
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.67 E-value=0.00016 Score=77.31 Aligned_cols=194 Identities=23% Similarity=0.332 Sum_probs=105.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHH-----HHHHH--H-hCCCeEEEEcCcchhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRD-----LFKKA--K-ENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~-----lf~~a--~-~~~p~IIfIDEID~l~~ 337 (500)
+|||.|.|||.|+-|.|.+-.-+-+-++. ++-. +.-.|.+++.+|+ ++-+. . -....|++|||+|.+-.
T Consensus 366 NVLLLGDPgtAKSQlLKFvEkvsPIaVYT-SGKG--SSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre 442 (729)
T KOG0481|consen 366 NVLLLGDPGTAKSQLLKFVEKVSPIAVYT-SGKG--SSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRE 442 (729)
T ss_pred eEEEecCCchhHHHHHHHHHhcCceEEEe-cCCC--cccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCc
Confidence 79999999999999999997655443332 2210 0011112211111 11000 0 01235999999999821
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCC--CCCCeEEEEeeCCC----C-------C--CchhhcCCCCcceEEEecCC-
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGFE--GNTGIIVIAATNRA----D-------I--LDSALLRPGRFDRQVTVDVP- 401 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~~--~~~~viVIaaTN~~----~-------~--Ld~aLlrpgRfdr~I~v~~P- 401 (500)
. +.-.-++..+|.--.+-+ .|+. -+.+.-|+||.|.+ | . +-+.+++ |||..+.+..-
T Consensus 443 ~---DRVAIHEAMEQQTISIAK--AGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILS--RFDmIFIVKD~h 515 (729)
T KOG0481|consen 443 D---DRVAIHEAMEQQTISIAK--AGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILS--RFDMIFIVKDEH 515 (729)
T ss_pred h---hhhHHHHHHHhhhHHHhh--hcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhh--hccEEEEEeccC
Confidence 1 100112222222111111 1111 14556788888852 1 2 3477888 99987776533
Q ss_pred ----CHHHHHHHHHHHhcCCCCC--c------cccHHH-----------------------HHHh---------------
Q 010809 402 ----DIRGRTEILKVHGSNKKFD--A------DVSLDV-----------------------IAMR--------------- 431 (500)
Q Consensus 402 ----d~~eR~~IL~~~l~~~~l~--~------dvdl~~-----------------------la~~--------------- 431 (500)
|..--..++.+|..+.+.. + ++.++. |...
T Consensus 516 ~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s 595 (729)
T KOG0481|consen 516 DEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDS 595 (729)
T ss_pred cchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcc
Confidence 2223344666777532211 1 111111 1100
Q ss_pred ----CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 432 ----TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 432 ----t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+--.+.++|+.+++-+-.+|.-+-....|.+|+++|+.
T Consensus 596 ~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~R 637 (729)
T KOG0481|consen 596 DKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALR 637 (729)
T ss_pred cccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHH
Confidence 11257789999999998899888889999999999987
No 297
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.66 E-value=6.2e-05 Score=71.94 Aligned_cols=123 Identities=16% Similarity=0.187 Sum_probs=60.0
Q ss_pred EEEEcCCCChHHHHHHHH-HH---hcCCCEEEEechhhH-Hhhhh---hh-------------hhHHHHHHHHHHhCCCe
Q 010809 267 VLLVGPPGTGKTLLAKAI-AG---EAGVPFFSISGSEFV-EMFVG---VG-------------ASRVRDLFKKAKENAPC 325 (500)
Q Consensus 267 vLL~GppGTGKT~LAral-A~---e~~~pfi~is~se~~-~~~vG---~~-------------~~~vr~lf~~a~~~~p~ 325 (500)
.+++|.||+|||+.|-.. .. +.|.+++. +...+. +.+.. .. ......+.........+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988555 33 33666665 433221 11100 00 00001111111111457
Q ss_pred EEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCC
Q 010809 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVP 401 (500)
Q Consensus 326 IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~P 401 (500)
+|+|||++.+...+... .......+ +.+.+. .+.++-++.+|..+..+|+.+++ +.+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~----~~~~~~~~-~~l~~h----Rh~g~diiliTQ~~~~id~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWK----GKKVPEII-EFLAQH----RHYGWDIILITQSPSQIDKFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-----T----HHH-HGGGGC----CCTT-EEEEEES-GGGB-HHHHC--CEEEEEEEEE-
T ss_pred EEEEECChhhcCCCccc----cccchHHH-HHHHHh----CcCCcEEEEEeCCHHHHhHHHHH--HHheEEEEEee
Confidence 99999999998877541 11122333 333322 24578899999999999999987 88777766544
No 298
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.64 E-value=0.00098 Score=67.20 Aligned_cols=190 Identities=26% Similarity=0.392 Sum_probs=101.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH------hcCCCEEEEechhhHHhh-hhhhhhHHHHHHHHH--------HhCCCe
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAG------EAGVPFFSISGSEFVEMF-VGVGASRVRDLFKKA--------KENAPC 325 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~------e~~~pfi~is~se~~~~~-vG~~~~~vr~lf~~a--------~~~~p~ 325 (500)
.+....+||.||.|.||+.||+.+.+ .+..+|+.++|..+...- +..--..++..|.-+ +.....
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34444699999999999999999954 457899999997664310 000000122222211 112245
Q ss_pred EEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC--C---C----CCCCeEEEEeeCC-------CCCCchhhcCC
Q 010809 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG--F---E----GNTGIIVIAATNR-------ADILDSALLRP 389 (500)
Q Consensus 326 IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~--~---~----~~~~viVIaaTN~-------~~~Ld~aLlrp 389 (500)
++|+|||..++ .+|.. .||+.++. | . -...+-+|+.|-+ ....-+.|..
T Consensus 285 mlfldeigelg----------adeqa----mllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~a- 349 (531)
T COG4650 285 MLFLDEIGELG----------ADEQA----MLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA- 349 (531)
T ss_pred eEehHhhhhcC----------ccHHH----HHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHH-
Confidence 99999998884 23322 23333321 1 1 1224556666543 1122333433
Q ss_pred CCcceEEEecCCCHHHHHHHH--------HHHhcCCC----CCccccHHHHH------HhCCCCcHHHHHHHHHHHHHHH
Q 010809 390 GRFDRQVTVDVPDIRGRTEIL--------KVHGSNKK----FDADVSLDVIA------MRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 390 gRfdr~I~v~~Pd~~eR~~IL--------~~~l~~~~----l~~dvdl~~la------~~t~G~sgadL~~lv~eAa~~A 451 (500)
|+. ...+.+|...+|.+-+ ..|.+... +..+.--..++ ..+.| +-++|..-+...+.+|
T Consensus 350 -rin-lwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~g-nfrelsasvtrmatla 426 (531)
T COG4650 350 -RIN-LWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRG-NFRELSASVTRMATLA 426 (531)
T ss_pred -hhh-eeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcc-cHHHHhHHHHHHHHHh
Confidence 443 5677788877766532 22322211 11111111111 12445 6677777666666665
Q ss_pred HHcCCCCcCHHHHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai~~v 471 (500)
....||.+-+++-+.+.
T Consensus 427 ---d~grit~~~ve~ei~rl 443 (531)
T COG4650 427 ---DSGRITLDVVEDEINRL 443 (531)
T ss_pred ---cCCceeHHHHHHHHHHH
Confidence 45568888777777654
No 299
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.64 E-value=0.00019 Score=75.45 Aligned_cols=109 Identities=19% Similarity=0.385 Sum_probs=63.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEechhhH-------Hh---hhhh------hhhHHHHHHHHHHhC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEFV-------EM---FVGV------GASRVRDLFKKAKEN 322 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~----~-~pfi~is~se~~-------~~---~vG~------~~~~vr~lf~~a~~~ 322 (500)
...++|+||+|+|||+++..+|..+ + ..+..+++..+. .. ..|. ....+...+... .
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l--~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL--R 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh--c
Confidence 4578999999999999999998753 3 345555554431 11 1111 112233333333 3
Q ss_pred CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCCCCCCchhhc
Q 010809 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDSALL 387 (500)
Q Consensus 323 ~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~~~~Ld~aLl 387 (500)
...+|+||..... ..+..+.+.+..+..... ...++|+.+|+..+.++..+.
T Consensus 215 ~~DlVLIDTaG~~-------------~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 215 NKHMVLIDTIGMS-------------QRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CCCEEEEcCCCCC-------------cccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHH
Confidence 3479999998432 122334455555544332 245788888888777765543
No 300
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.64 E-value=0.00029 Score=72.77 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=49.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh-h---hhh------------hhhHHHHHHHHHHh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~-~---vG~------------~~~~vr~lf~~a~~ 321 (500)
.+..+-+.++||||+|||+||-.++.+ .+.++++++..+-.+. + .|. .+..+..+-..++.
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s 131 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRS 131 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhc
Confidence 333345889999999999999988654 3778888887543221 0 111 11112222222345
Q ss_pred CCCeEEEEcCcchhhhc
Q 010809 322 NAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~~ 338 (500)
..+++|+||-+-++.++
T Consensus 132 ~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 132 GAVDLIVVDSVAALVPK 148 (325)
T ss_pred cCCCEEEEcchHhhccc
Confidence 67899999999998753
No 301
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.64 E-value=0.00038 Score=82.40 Aligned_cols=136 Identities=31% Similarity=0.404 Sum_probs=91.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh--hhhh-------hhhHHH--HHHHHHHhCCCeEEEEcCc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM--FVGV-------GASRVR--DLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~--~vG~-------~~~~vr--~lf~~a~~~~p~IIfIDEI 332 (500)
.+++||-|.||+|||.|..|+|++.|...++|+.|+-.+. .+|. |+-+.+ .++..++.+ ..+++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G--~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDG--GWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcC--CEEEeehh
Confidence 3479999999999999999999999999999998865432 1111 111222 233333444 48889999
Q ss_pred chhhhccCCCCCCCChHHHHHHHHHHH--------Hhc-CCCCCCCeEEEEeeCCCC------CCchhhcCCCCcceEEE
Q 010809 333 DAVGRQRGTGIGGGNDEREQTLNQLLT--------EMD-GFEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVT 397 (500)
Q Consensus 333 D~l~~~r~~~~~~~~~e~~~~L~~LL~--------emd-~~~~~~~viVIaaTN~~~------~Ld~aLlrpgRfdr~I~ 397 (500)
.-.. ...-+-||..|. ++| -|..++++.|.||-|+-+ .|+..++. ||. ++.
T Consensus 1621 NLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs-vV~ 1686 (4600)
T COG5271 1621 NLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS-VVK 1686 (4600)
T ss_pred hhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh-eEE
Confidence 6541 112233444443 222 245567899999998643 68888888 996 788
Q ss_pred ecCCCHHHHHHHHHHHhc
Q 010809 398 VDVPDIRGRTEILKVHGS 415 (500)
Q Consensus 398 v~~Pd~~eR~~IL~~~l~ 415 (500)
++..+.++...|.+....
T Consensus 1687 ~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1687 MDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred ecccccchHHHHHHhhCC
Confidence 988888877777665443
No 302
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.64 E-value=0.00032 Score=67.50 Aligned_cols=105 Identities=25% Similarity=0.392 Sum_probs=59.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh-----cCCCE-------------EEEechhhHHh---hhhhhhhHHHHHHHHHHhCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE-----AGVPF-------------FSISGSEFVEM---FVGVGASRVRDLFKKAKENA 323 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e-----~~~pf-------------i~is~se~~~~---~vG~~~~~vr~lf~~a~~~~ 323 (500)
+-++|.||+|+|||++.|.++.. .|.++ ..++..+-+.. .......++..+++.+....
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 36899999999999999999863 34332 11111111110 01112245677777765457
Q ss_pred CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 324 PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 324 p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
|.++++||.-.- -...+.......++..+.. .+..+|.+|...+.+
T Consensus 106 p~llllDEp~~g---------lD~~~~~~l~~~ll~~l~~----~~~tiiivTH~~~~~ 151 (199)
T cd03283 106 PVLFLLDEIFKG---------TNSRERQAASAAVLKFLKN----KNTIGIISTHDLELA 151 (199)
T ss_pred CeEEEEecccCC---------CCHHHHHHHHHHHHHHHHH----CCCEEEEEcCcHHHH
Confidence 899999997331 1112233344556665532 245677777765543
No 303
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.61 E-value=0.00065 Score=67.00 Aligned_cols=41 Identities=32% Similarity=0.449 Sum_probs=31.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEF 300 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~ 300 (500)
|......+|++||||+|||++|..++.+ .|.+.++++..+-
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 4455557999999999999999876543 4778888876543
No 304
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.61 E-value=0.0016 Score=75.73 Aligned_cols=155 Identities=18% Similarity=0.230 Sum_probs=87.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh-------hHHhh---h-----hh---h------------hhHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE-------FVEMF---V-----GV---G------------ASRVRDL 315 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se-------~~~~~---v-----G~---~------------~~~vr~l 315 (500)
-++++||+|.|||+++..++...+ ++..++..+ |...+ + +. . ...+..+
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQL 112 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHH
Confidence 589999999999999999987766 665554431 11110 0 00 0 0112233
Q ss_pred HHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc-hhhcCCCCcc
Q 010809 316 FKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD-SALLRPGRFD 393 (500)
Q Consensus 316 f~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld-~aLlrpgRfd 393 (500)
+..... ..|.+|+|||+|.+- +....+.+..|+..+ ..++.+|.++.....+. ..+... +
T Consensus 113 ~~~l~~~~~~~~lvlDD~h~~~----------~~~~~~~l~~l~~~~-----~~~~~lv~~sR~~~~~~~~~l~~~---~ 174 (903)
T PRK04841 113 FIELADWHQPLYLVIDDYHLIT----------NPEIHEAMRFFLRHQ-----PENLTLVVLSRNLPPLGIANLRVR---D 174 (903)
T ss_pred HHHHhcCCCCEEEEEeCcCcCC----------ChHHHHHHHHHHHhC-----CCCeEEEEEeCCCCCCchHhHHhc---C
Confidence 333333 578999999999981 234445666666643 33444444554321221 122111 1
Q ss_pred eEEEec----CCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHH
Q 010809 394 RQVTVD----VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLAN 442 (500)
Q Consensus 394 r~I~v~----~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~ 442 (500)
..+.+. ..+.++-.+++...+.. .+ +..+...+...|.| .+.-+.-
T Consensus 175 ~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~G-wp~~l~l 224 (903)
T PRK04841 175 QLLEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEG-WATALQL 224 (903)
T ss_pred cceecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCC-hHHHHHH
Confidence 234455 56888888888755432 22 33456788889998 5554543
No 305
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.60 E-value=0.0004 Score=67.61 Aligned_cols=108 Identities=23% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---c-CCCEEEEechhhHHhhhh--------------h--------h-----
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---A-GVPFFSISGSEFVEMFVG--------------V--------G----- 308 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~-~~pfi~is~se~~~~~vG--------------~--------~----- 308 (500)
|.+.+..+|+.||||||||+++..++.+ . +.++++++..+-.+.+.. . .
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 4444556999999999999999987543 2 889998886533321100 0 0
Q ss_pred ------hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 309 ------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 309 ------~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
......+.+..+...+.+++||-+..+ ... ....+....+..+...+. ..++.++.+..
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l-~~~-----~~~~~~r~~l~~l~~~l~----~~~~t~llt~~ 159 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL-LLY-----DDPEELRRFLRALIKFLK----SRGVTTLLTSE 159 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH-TTS-----SSGGGHHHHHHHHHHHHH----HTTEEEEEEEE
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH-hhc-----CCHHHHHHHHHHHHHHHH----HCCCEEEEEEc
Confidence 111223333344556789999999998 221 123344456666666654 23444444444
No 306
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.59 E-value=0.00039 Score=67.80 Aligned_cols=116 Identities=24% Similarity=0.250 Sum_probs=65.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhh--HHhhh------h----------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEMFV------G---------------- 306 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~--~~~~v------G---------------- 306 (500)
|.+...-+.|+||||+|||+++..+|... +..+++++..+- .+.+. +
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 34444458999999999999999997543 257888887541 11000 0
Q ss_pred ---hhhhHHHHHHHHHHhC-CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 307 ---VGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 307 ---~~~~~vr~lf~~a~~~-~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.-...+..+-+..... .+++|+||-+.++......+ .+...++.+.+.+++..+..+....++.|+.+.
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 0001112222223444 78999999999885421111 011234555666666666544444456666554
No 307
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.58 E-value=0.00029 Score=68.28 Aligned_cols=116 Identities=23% Similarity=0.257 Sum_probs=66.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---C------CCEEEEechhhH--Hhhhh---------------------h
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---G------VPFFSISGSEFV--EMFVG---------------------V 307 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~------~pfi~is~se~~--~~~vG---------------------~ 307 (500)
|.+...-+.|+||||+|||+++..+|... + ..+++++..+-. +.+.. .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 34444468999999999999999997653 3 677888775421 11000 0
Q ss_pred hhhHHHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 308 GASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 308 ~~~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
....+...++.. ....+++|+||-+..+......+ .+...++.+.+.+++..+..+....++.||.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEE
Confidence 111122223322 24567899999999886542111 011234455666666666555444555565554
No 308
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.57 E-value=0.00058 Score=58.93 Aligned_cols=23 Identities=48% Similarity=0.533 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
+++++||+|+|||+++..++.+.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887655
No 309
>PRK14532 adenylate kinase; Provisional
Probab=97.57 E-value=0.00032 Score=66.21 Aligned_cols=37 Identities=30% Similarity=0.530 Sum_probs=30.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
.++|.||||+|||++|+.+|++.+.+++ +..++....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~~ 38 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRAA 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHHH
Confidence 4899999999999999999999986664 555665543
No 310
>PRK07261 topology modulation protein; Provisional
Probab=97.56 E-value=0.00012 Score=68.64 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
-++++|+||+||||||+.++...+.|++..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~ 33 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDT 33 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCC
Confidence 38999999999999999999999999887654
No 311
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.56 E-value=0.00011 Score=73.46 Aligned_cols=98 Identities=21% Similarity=0.357 Sum_probs=63.2
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHh-cChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---CEEEEechh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFL-KKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV---PFFSISGSE 299 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l-~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~---pfi~is~se 299 (500)
.....+++++.-.....+++.+++... +. .+++++.||+|+|||++++++..+... .++.+. +
T Consensus 97 ~~~~~sle~l~~~~~~~~~~~~~l~~~v~~-----------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iE--d 163 (270)
T PF00437_consen 97 SSKPFSLEDLGESGSIPEEIAEFLRSAVRG-----------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIE--D 163 (270)
T ss_dssp TSS--CHCCCCHTHHCHHHHHHHHHHCHHT-----------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEE--S
T ss_pred ccccccHhhccCchhhHHHHHHHHhhcccc-----------ceEEEEECCCccccchHHHHHhhhccccccceEEec--c
Confidence 345678899887776666666666553 22 237999999999999999999987633 333332 2
Q ss_pred hHHhhh----------hhhhhHHHHHHHHHHhCCCeEEEEcCcch
Q 010809 300 FVEMFV----------GVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 300 ~~~~~v----------G~~~~~vr~lf~~a~~~~p~IIfIDEID~ 334 (500)
-.|... ........+++..+.+..|.+|+|+|+-.
T Consensus 164 ~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 164 PPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp SS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred ccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 222110 12344677888888889999999999943
No 312
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=0.00026 Score=63.22 Aligned_cols=37 Identities=41% Similarity=0.672 Sum_probs=30.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
++++||||+|||++|+.++...+ ...++..++.....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~ 38 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLA 38 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHc
Confidence 68999999999999999999988 55567666665443
No 313
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00011 Score=72.53 Aligned_cols=22 Identities=45% Similarity=0.709 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+-|.||+|||||||.+.+|+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999983
No 314
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.54 E-value=0.0014 Score=68.28 Aligned_cols=160 Identities=18% Similarity=0.225 Sum_probs=90.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH------hh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE------MF 304 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~------~~ 304 (500)
..+.+.+.+...+..++-... ...|-.+.|+|..|||||.+.+.+-++.+.|.+.++|-+... ..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~---------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNS---------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred cCccchHHHHHHHHHHhCCCC---------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHH
Confidence 456677777766665543211 245778899999999999999999999999999998865432 11
Q ss_pred ---h----------hhhhhHHHH---HHHH--HHhC--CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC
Q 010809 305 ---V----------GVGASRVRD---LFKK--AKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (500)
Q Consensus 305 ---v----------G~~~~~vr~---lf~~--a~~~--~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~ 364 (500)
+ ......+.+ +|.+ +..+ ..-.|++|.+|.+-. .....+..++..-+-.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD-----------~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD-----------MDAILLQCLFRLYELL 145 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc-----------cchHHHHHHHHHHHHh
Confidence 1 011122222 2333 1112 245788999999931 1122333333322211
Q ss_pred CCCCCeEEEEeeCCCCCCchhhcCCCCcce-EEEecCCCHHHHHHHHHHH
Q 010809 365 EGNTGIIVIAATNRADILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVH 413 (500)
Q Consensus 365 ~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~ 413 (500)
. ...+.++...-..+. .-+.+-|-++- ++++|.|+.++-..|+..-
T Consensus 146 ~-~~~i~iils~~~~e~--~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 146 N-EPTIVIILSAPSCEK--QYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred C-CCceEEEEeccccHH--HhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2 223333333322221 11222233333 7899999999988887643
No 315
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.53 E-value=0.0017 Score=62.47 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=87.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh----hhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhcc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV----GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v----G~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r 339 (500)
|.-+++.|+||+|||++|+.+|.+++.++ +..+|++.... +.++......|+.-+...+. ..+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~-----~~~~~~~~y 75 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSM-----TDENIVKGY 75 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCc-----chhHHHHHH
Confidence 44689999999999999999999998765 34444432211 11101111111111111100 001110000
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC-CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC
Q 010809 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK 418 (500)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN-~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~ 418 (500)
.+..+.+...+....+.+.....-+|+-++. .++.++..... . ...+.+..++.+..++-+........
T Consensus 76 -------~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~ 145 (197)
T PRK12339 76 -------LDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTN--N-IRAFYLYIRDAELHRSRLADRINYTH 145 (197)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhc--C-eEEEEEEeCCHHHHHHHHHHHhhccc
Confidence 0000111111111111111122234444443 34444322211 2 23566666676654443333332211
Q ss_pred CCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHc
Q 010809 419 FDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 419 l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~ 473 (500)
.+...+...+. -.+++.+=+.....|...+-..|+..++++++++++.
T Consensus 146 --~~~p~~~~~~~-----~~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~~~~~~ 193 (197)
T PRK12339 146 --KNSPGKRLAEH-----LPEYRTIMDYSIADARGYNIKVIDTDNYREARNPLLD 193 (197)
T ss_pred --CCCcHHHHHHH-----HHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHH
Confidence 12223333332 2356555566666777888899999999999998764
No 316
>PRK06762 hypothetical protein; Provisional
Probab=97.53 E-value=0.00035 Score=64.52 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=33.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
|.-++|+|+||+|||++|+.++..++..+..++...+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHh
Confidence 56789999999999999999999987667777777666533
No 317
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.51 E-value=0.00048 Score=68.79 Aligned_cols=39 Identities=31% Similarity=0.339 Sum_probs=30.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
|.....-++|.|+||+|||+++..+|..+ +.++++++..
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 34444468999999999999999886653 7788888764
No 318
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.48 E-value=0.00047 Score=63.99 Aligned_cols=102 Identities=21% Similarity=0.249 Sum_probs=61.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhH--------Hhhhh-----hhhhHHHHHHHHHHhCCCeEEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV--------EMFVG-----VGASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~--------~~~vG-----~~~~~vr~lf~~a~~~~p~IIfI 329 (500)
..+.|.||+|+|||+|.+.+++.... --+.+++.+.. ...++ .+..+.+-.+..+....|.++++
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl 106 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL 106 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence 36899999999999999999986521 01222222111 11111 11234455566666778999999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
||-..- -+.+..+.+.+++.++.. + +..+|.+|...+
T Consensus 107 DEP~~~----------LD~~~~~~l~~~l~~~~~---~-~~tiii~sh~~~ 143 (163)
T cd03216 107 DEPTAA----------LTPAEVERLFKVIRRLRA---Q-GVAVIFISHRLD 143 (163)
T ss_pred ECCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHH
Confidence 998542 245556677777776631 2 345666666544
No 319
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.0006 Score=68.12 Aligned_cols=46 Identities=24% Similarity=0.413 Sum_probs=33.0
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e 287 (500)
..+.-+.+.......+...+. +.+ -+++.||+|||||+||.+++-+
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~---~~~-----------lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIE---SKQ-----------LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred cCCccccCCCHHHHHHHHHHh---cCC-----------eEEEECCCCCCHHHHHHHHHHH
Confidence 345556666666666555443 221 5899999999999999999884
No 320
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.0014 Score=65.34 Aligned_cols=111 Identities=20% Similarity=0.340 Sum_probs=58.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC------EEEEech------hhHHhh--------hhhh-hhHH---HHHHHHH--
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVP------FFSISGS------EFVEMF--------VGVG-ASRV---RDLFKKA-- 319 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~p------fi~is~s------e~~~~~--------vG~~-~~~v---r~lf~~a-- 319 (500)
-++|.||+|+|||+|++.+++..... ++.+... +|.... .+.. ..++ +.+...+
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999876432 3332222 232222 1111 1111 1222222
Q ss_pred --HhCCCeEEEEcCcchhhhcc-------CCCCCCC-ChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 320 --KENAPCIVFVDEIDAVGRQR-------GTGIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 320 --~~~~p~IIfIDEID~l~~~r-------~~~~~~~-~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
..+...+|||||++.+.... +..+++| ....-..+.+++..--.+..+..+..++|.
T Consensus 98 ~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l~T~ 164 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTIIATA 164 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEeeeh
Confidence 23457899999999885432 2222222 222334445666533333234456666443
No 321
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.00069 Score=71.76 Aligned_cols=129 Identities=15% Similarity=0.195 Sum_probs=70.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechhhHH-------hh---hh------hhhhHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEFVE-------MF---VG------VGASRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~se~~~-------~~---vG------~~~~~vr~lf~~a 319 (500)
.|+.++|+||+|+|||+++..+|..+ +..+..+++..+.. .| .| .....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 46689999999999999999998754 34555555443311 11 11 1112333333333
Q ss_pred HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC-CCeEEEEeeCCCCCCchhhcCCC--CcceEE
Q 010809 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADILDSALLRPG--RFDRQV 396 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~-~~viVIaaTN~~~~Ld~aLlrpg--Rfdr~I 396 (500)
....+|+||++.... .+. ..+.++...++..... ..++|+.+|.....+...+.+-. .++ .+
T Consensus 253 --~~~DlVLIDTaGr~~---------~~~---~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~-~~ 317 (388)
T PRK12723 253 --KDFDLVLVDTIGKSP---------KDF---MKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYK-TV 317 (388)
T ss_pred --CCCCEEEEcCCCCCc---------cCH---HHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCC-EE
Confidence 345799999996651 111 1244554444443333 45677777776666654443211 123 44
Q ss_pred EecCCCHHHH
Q 010809 397 TVDVPDIRGR 406 (500)
Q Consensus 397 ~v~~Pd~~eR 406 (500)
.+.-.|...+
T Consensus 318 I~TKlDet~~ 327 (388)
T PRK12723 318 IFTKLDETTC 327 (388)
T ss_pred EEEeccCCCc
Confidence 5555555443
No 322
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.44 E-value=0.00057 Score=64.78 Aligned_cols=34 Identities=32% Similarity=0.691 Sum_probs=27.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.++|.||||+||||+|+.+|+. .++..++-.++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHh
Confidence 4899999999999999999999 455556644443
No 323
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.43 E-value=0.00048 Score=66.09 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=52.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh----hhhhhhhHHHHHHHHHH---------hCCCeEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKAK---------ENAPCIVFV 329 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~----~vG~~~~~vr~lf~~a~---------~~~p~IIfI 329 (500)
-.++.||||||||++++.++.. .+..++.+..+.-... -.+.....+..++.... .....+|+|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 4788999999999999998653 3677777765533221 11222233333322211 122369999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
||+-.+. ...+..++..... ...++++++-.+.
T Consensus 100 DEasmv~--------------~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 100 DEASMVD--------------SRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp SSGGG-B--------------HHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred ecccccC--------------HHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 9998772 2356666666543 2345666665554
No 324
>PRK13948 shikimate kinase; Provisional
Probab=97.42 E-value=0.00054 Score=65.17 Aligned_cols=43 Identities=26% Similarity=0.355 Sum_probs=34.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG 306 (500)
+.|..++|.|.+|+|||++++.+|..++.+|+..+ .+.+...|
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTG 50 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHh
Confidence 34578999999999999999999999999998554 44444333
No 325
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.42 E-value=0.00071 Score=64.97 Aligned_cols=67 Identities=28% Similarity=0.440 Sum_probs=42.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEec-hhhHH---------hhhhhhhhHHHHHHHHHHhCCCeEEEEcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSISG-SEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~----pfi~is~-se~~~---------~~vG~~~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
-+++.||+|+|||++++++++.... .++.+.. .++.. .-++.......+.+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 3789999999999999999887642 2222211 11110 01122223455566666677899999999
Q ss_pred c
Q 010809 332 I 332 (500)
Q Consensus 332 I 332 (500)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
No 326
>PRK04040 adenylate kinase; Provisional
Probab=97.42 E-value=0.0018 Score=61.81 Aligned_cols=35 Identities=23% Similarity=0.298 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc--CCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~--~~pfi~is~se~ 300 (500)
|+-++++|+||+|||++++.++.++ +.+++ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 5579999999999999999999998 55554 44444
No 327
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.42 E-value=0.0018 Score=62.92 Aligned_cols=109 Identities=23% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhhhhh---------------------hhh----H
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMFVGV---------------------GAS----R 311 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~vG~---------------------~~~----~ 311 (500)
|.+....+++.|+||+|||+++..++.+ .+.++++++..+-.+.+... ... .
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 4444456899999999999999988754 37788888876443321100 000 0
Q ss_pred HHHH----HHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 312 VRDL----FKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 312 vr~l----f~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+..+ .....+..++.++||-+..+-.. .+...+..+.+..++..+.. .++.++.++.
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~-----~~~~~~~r~~l~~l~~~lk~----~~~tvll~s~ 152 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLLETL-----FDDDAERRTELFRFYSSLRE----TGVTTILTSE 152 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHHhhh-----cCCHHHHHHHHHHHHHHHHh----CCCEEEEEEc
Confidence 1111 11223456788999998877211 11234445666777777642 3445555554
No 328
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.41 E-value=0.00082 Score=70.89 Aligned_cols=72 Identities=28% Similarity=0.408 Sum_probs=43.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhcC-----CCEEEEechhh-------HHhhhh---------hhhhHHH---HHHHHHH--
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF-------VEMFVG---------VGASRVR---DLFKKAK-- 320 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~-----~pfi~is~se~-------~~~~vG---------~~~~~vr---~lf~~a~-- 320 (500)
.+|+||||+|||+|++.+++... +.++.+-..+. .....| ....+++ .+++.|+
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~ 251 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRL 251 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999988653 33232222222 111111 1112232 3333332
Q ss_pred --hCCCeEEEEcCcchhhhc
Q 010809 321 --ENAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 321 --~~~p~IIfIDEID~l~~~ 338 (500)
.+...+||||||+.+.+.
T Consensus 252 ~e~G~dVlL~iDsItR~arA 271 (416)
T PRK09376 252 VEHGKDVVILLDSITRLARA 271 (416)
T ss_pred HHcCCCEEEEEEChHHHHHH
Confidence 245679999999998654
No 329
>PRK05973 replicative DNA helicase; Provisional
Probab=97.40 E-value=0.00074 Score=66.87 Aligned_cols=40 Identities=35% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE 299 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se 299 (500)
|.....-+++.|+||+|||+++-.++.+. |.++++++..+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 33333468999999999999998886644 77888887654
No 330
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.40 E-value=0.00028 Score=66.93 Aligned_cols=68 Identities=28% Similarity=0.420 Sum_probs=44.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEech-hhHH---hh----------hhhhhhHHHHHHHHHHhCCCeEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFVE---MF----------VGVGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~s-e~~~---~~----------vG~~~~~vr~lf~~a~~~~p~IIf 328 (500)
..+++.||+|+|||++++++++... ...+.+... ++.. .. .+.....+.++++.+.+..|.+|+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~ 105 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRII 105 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEE
Confidence 3799999999999999999998652 122222111 1100 00 011123466777777788899999
Q ss_pred EcCc
Q 010809 329 VDEI 332 (500)
Q Consensus 329 IDEI 332 (500)
++|+
T Consensus 106 igEi 109 (186)
T cd01130 106 VGEV 109 (186)
T ss_pred EEcc
Confidence 9999
No 331
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.39 E-value=0.0026 Score=68.44 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
..|..++++|++|+|||+++..+|..+ +..+..+++..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357789999999999999999998755 566776766543
No 332
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.37 E-value=0.0011 Score=64.82 Aligned_cols=39 Identities=28% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
|.....-++|.|+||+|||+++..++... +.++++++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E 51 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLE 51 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCC
Confidence 55555568999999999999998886543 7888888854
No 333
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00052 Score=64.50 Aligned_cols=32 Identities=28% Similarity=0.606 Sum_probs=29.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
.+++|+|++|+|||++.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 36999999999999999999999999998653
No 334
>PRK09354 recA recombinase A; Provisional
Probab=97.36 E-value=0.00068 Score=70.68 Aligned_cols=77 Identities=25% Similarity=0.272 Sum_probs=48.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh-h---hhh------------hhhHHHHHHHHHHh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM-F---VGV------------GASRVRDLFKKAKE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~-~---vG~------------~~~~vr~lf~~a~~ 321 (500)
.+..+-+.++||||||||+|+-.++.+ .+..+++++..+-.+. + .|. .+..+..+-...+.
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s 136 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRS 136 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhc
Confidence 333345889999999999999887553 3778888887653221 1 010 11111111122345
Q ss_pred CCCeEEEEcCcchhhh
Q 010809 322 NAPCIVFVDEIDAVGR 337 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~ 337 (500)
..+.+|+||=+-++.+
T Consensus 137 ~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 137 GAVDLIVVDSVAALVP 152 (349)
T ss_pred CCCCEEEEeChhhhcc
Confidence 6789999999999865
No 335
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.35 E-value=0.00068 Score=63.65 Aligned_cols=27 Identities=44% Similarity=0.882 Sum_probs=22.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPF 292 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pf 292 (500)
+++|+|+||+||||+++.++.++ +.++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~v 30 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLPV 30 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGGE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCcc
Confidence 48999999999999999998877 5554
No 336
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.35 E-value=0.00034 Score=62.47 Aligned_cols=52 Identities=25% Similarity=0.356 Sum_probs=41.2
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+|.|++-+.+.+.+.+.. +.++. .+.|.-+-|+|+||||||.+++.+|+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~------p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN------PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC------CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4789999999999887765 55542 2345556689999999999999999974
No 337
>PRK13947 shikimate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=66.41 Aligned_cols=31 Identities=32% Similarity=0.519 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+|+|.|+||+|||++++.+|..++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997543
No 338
>PRK13946 shikimate kinase; Provisional
Probab=97.34 E-value=0.00062 Score=64.47 Aligned_cols=34 Identities=32% Similarity=0.576 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
.++.|+|.|++|+|||++++.+|..++.||+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 4568999999999999999999999999998655
No 339
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.33 E-value=0.00026 Score=72.53 Aligned_cols=66 Identities=30% Similarity=0.384 Sum_probs=46.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEechhhHHhh----------hhhhhhHHHHHHHHHHhCCCeEEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEFVEMF----------VGVGASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~-----~pfi~is~se~~~~~----------vG~~~~~vr~lf~~a~~~~p~IIfI 329 (500)
++++++||+|+|||++++++++... ..++.+ .+-.|.. ...+.....++++.+.+..|..|++
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~ti--Ed~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII--EDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEE--CCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 3799999999999999999998752 233333 2222211 1122225778888888899999999
Q ss_pred cCc
Q 010809 330 DEI 332 (500)
Q Consensus 330 DEI 332 (500)
.|+
T Consensus 211 GEi 213 (299)
T TIGR02782 211 GEV 213 (299)
T ss_pred ecc
Confidence 998
No 340
>PTZ00202 tuzin; Provisional
Probab=97.33 E-value=0.0077 Score=64.48 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=50.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
-...+..|.++...+|.+++.... ...|+-+.|+||+|+|||++++.++..++.+.++++...
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d---------~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg 321 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLD---------TAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRG 321 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccC---------CCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCC
Confidence 346789999999999988876422 223456899999999999999999999998888777653
No 341
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.33 E-value=0.0026 Score=61.93 Aligned_cols=39 Identities=31% Similarity=0.415 Sum_probs=29.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~s 298 (500)
|......+++.||||+|||+++..++.+ .+.++++++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4445557999999999999999987643 36677777754
No 342
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.33 E-value=0.00077 Score=69.47 Aligned_cols=114 Identities=23% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---------cCCCEEEEechh-h-HHhh------hhhh---------------
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---------AGVPFFSISGSE-F-VEMF------VGVG--------------- 308 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e---------~~~pfi~is~se-~-~~~~------vG~~--------------- 308 (500)
.....-+.|+||||+|||.++..+|-. .+..++|++..+ | .+.+ .+..
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCCC
Confidence 333345789999999999999887632 245788887654 1 1110 0110
Q ss_pred h----hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 309 A----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 309 ~----~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
. ..+..+........+.+|+||-+-++.+..-.+ .+...++++.+.+++..+..+....++.|+.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la~~~~vavvit 242 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKISEEFNVAVFVT 242 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHHHHcCcEEEEE
Confidence 0 111222222334567899999999887643222 12233455556676665555444445555554
No 343
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.31 E-value=0.00041 Score=62.77 Aligned_cols=39 Identities=33% Similarity=0.691 Sum_probs=31.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG 306 (500)
+++|+|+||+|||++|+.+|..++.+++.. .++.....+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~--d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL--DELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc--hHHHHHHcC
Confidence 389999999999999999999999988744 455544333
No 344
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.30 E-value=0.0023 Score=64.05 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=29.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~s 298 (500)
|.....-++++||||||||+++..+|.+ .+.++++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 3444456899999999999999988653 36788888765
No 345
>PRK14974 cell division protein FtsY; Provisional
Probab=97.27 E-value=0.0021 Score=66.88 Aligned_cols=73 Identities=29% Similarity=0.375 Sum_probs=45.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH-------Hhh---hhh----------hhhHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~-------~~~---vG~----------~~~~vr~lf~~a 319 (500)
.|.-++|+||||+|||+++..+|..+ +..+..+++.-+. ..+ .|. ....+.+..+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 36679999999999999888887654 5566656654221 111 110 012233444455
Q ss_pred HhCCCeEEEEcCcchh
Q 010809 320 KENAPCIVFVDEIDAV 335 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l 335 (500)
+.....+|+||....+
T Consensus 219 ~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 219 KARGIDVVLIDTAGRM 234 (336)
T ss_pred HhCCCCEEEEECCCcc
Confidence 5555579999998554
No 346
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.27 E-value=0.00069 Score=70.65 Aligned_cols=67 Identities=21% Similarity=0.401 Sum_probs=44.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC----CEEEEe-chhhHH---------hhhhhhhhHHHHHHHHHHhCCCeEEEEcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV----PFFSIS-GSEFVE---------MFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~----pfi~is-~se~~~---------~~vG~~~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
.++++||+|+|||++.+++.+...- .++.+. ..++.. .-+|.......+.++.+....|.+|++||
T Consensus 124 ~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vgE 203 (343)
T TIGR01420 124 LILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIGE 203 (343)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEeC
Confidence 5899999999999999999886542 233321 112210 01222223456677777788999999999
Q ss_pred c
Q 010809 332 I 332 (500)
Q Consensus 332 I 332 (500)
+
T Consensus 204 i 204 (343)
T TIGR01420 204 M 204 (343)
T ss_pred C
Confidence 9
No 347
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.26 E-value=0.00061 Score=75.25 Aligned_cols=54 Identities=31% Similarity=0.363 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 312 vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
.|-.|..+.-++|.++||||.-.- -+++.+..+.+++++. -+++.||..+.++.
T Consensus 522 QRlafARilL~kP~~v~LDEATsA----------LDe~~e~~l~q~l~~~-----lp~~tvISV~Hr~t 575 (604)
T COG4178 522 QRLAFARLLLHKPKWVFLDEATSA----------LDEETEDRLYQLLKEE-----LPDATVISVGHRPT 575 (604)
T ss_pred HHHHHHHHHHcCCCEEEEecchhc----------cChHHHHHHHHHHHhh-----CCCCEEEEeccchh
Confidence 455677777789999999998443 3566777788887742 25678888877754
No 348
>PRK03839 putative kinase; Provisional
Probab=97.26 E-value=0.00024 Score=66.64 Aligned_cols=30 Identities=30% Similarity=0.610 Sum_probs=27.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
.|+|.|+||+||||+++.+|+.++.+|+.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 389999999999999999999999998764
No 349
>PRK04328 hypothetical protein; Provisional
Probab=97.26 E-value=0.0033 Score=62.57 Aligned_cols=40 Identities=33% Similarity=0.453 Sum_probs=30.0
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se 299 (500)
|.+....++++||||||||+++..++.+ .+.+.++++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 3444456899999999999999877543 367888887643
No 350
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.25 E-value=0.0016 Score=66.82 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh-hH-Hhh------hhhhh-------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-FV-EMF------VGVGA------------- 309 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se-~~-~~~------vG~~~------------- 309 (500)
|.....-++++||||+|||+++..+|-.+ +..++|++..+ |. +.+ .|...
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~~~~~i~i~~~~ 170 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAY 170 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhhceEEEecC
Confidence 34444557899999999999999997653 34788888765 11 110 01100
Q ss_pred ---h---HHHHHHHHHHhC--CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 310 ---S---RVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 310 ---~---~vr~lf~~a~~~--~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
. .+..+.+..... .+++|+||=+-++.+..-.+. +...++++.+++++..+..+....++.|+.+.
T Consensus 171 ~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~-~~~~~r~~~l~~~~~~L~~~a~~~~~~v~~tn 244 (310)
T TIGR02236 171 NSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGR-GALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244 (310)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHhCcEEEEec
Confidence 0 112222333333 367999999988755422211 12233445566655555444334455665553
No 351
>PRK00625 shikimate kinase; Provisional
Probab=97.25 E-value=0.00028 Score=66.54 Aligned_cols=31 Identities=39% Similarity=0.650 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+|+|+|.||+|||++++.+|+.++.+|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998664
No 352
>PLN02200 adenylate kinase family protein
Probab=97.25 E-value=0.00089 Score=66.15 Aligned_cols=42 Identities=21% Similarity=0.415 Sum_probs=34.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+.+.|.-+++.||||+|||++|+.+|.+.+.+ .++.++++..
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 45566789999999999999999999998865 5677777654
No 353
>PLN02674 adenylate kinase
Probab=97.24 E-value=0.0016 Score=64.73 Aligned_cols=38 Identities=26% Similarity=0.521 Sum_probs=30.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+..++|.||||+||||+|+.+|...+++. ++..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHHHH
Confidence 45799999999999999999999998655 455666544
No 354
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.24 E-value=0.0015 Score=67.26 Aligned_cols=116 Identities=22% Similarity=0.214 Sum_probs=64.9
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhh--HHhh------hhhhh-------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEMF------VGVGA------------- 309 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~--~~~~------vG~~~------------- 309 (500)
|.....-++++||||+|||.++..+|-.+ +..++|++..+- .+.+ .|...
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 34444568899999999999999997653 347888887651 1110 01000
Q ss_pred ------hHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 310 ------SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 310 ------~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
..+..+...... ..+++|+||=|-++.+....+ .+...++++.+.+++..+..+....++.+|.+.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la~~~~vavl~tn 250 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVG-RGNLAERQQKLNKHLHDLLRLADLYNAAVVVTN 250 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccC-CccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 001122222233 456799999999986542211 112234455566666555444334456666654
No 355
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.24 E-value=0.002 Score=63.80 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=29.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
|+|+|+||+|||++|+.++..+ +.+++.++...+.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~ 40 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRE 40 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHH
Confidence 7899999999999999999876 56777777655543
No 356
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.23 E-value=0.0028 Score=61.66 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=20.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~ 286 (500)
+.++|+||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5699999999999999999973
No 357
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.22 E-value=0.0013 Score=68.67 Aligned_cols=114 Identities=24% Similarity=0.222 Sum_probs=64.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh-h-HHhh------hhhhh--------------
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F-VEMF------VGVGA-------------- 309 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se-~-~~~~------vG~~~-------------- 309 (500)
.....-..|+||||||||.|+..+|-.. +..++|++..+ | .+.+ .|...
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCCC
Confidence 3333457899999999999999886322 35778887654 1 1100 01100
Q ss_pred -----hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 310 -----SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 310 -----~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
..+..+-.......+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.||.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r~~~~~r-g~l~~rq~~L~~~~~~L~~lA~~~~vavvvT 272 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGR-GELAERQQKLAQMLSRLTKIAEEFNVAVYMT 272 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhhccccCc-cchHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1112222223345688999999999876532221 2233556667777666644433445555554
No 358
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.20 E-value=0.0017 Score=60.98 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=55.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh-hhh----------------hhhhHHHHHHHHHHhCCCeEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVG----------------VGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~-~vG----------------~~~~~vr~lf~~a~~~~p~IIf 328 (500)
.+++.|+||+|||++|..++.+.+.+++++........ ... +....+..+++.. ...+.+++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~Vl 81 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVL 81 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEE
Confidence 48999999999999999999998888887765432111 000 0011233333321 12356899
Q ss_pred EcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC
Q 010809 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG 363 (500)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~ 363 (500)
||-+..+..+.-.. ...+.....+..++..+..
T Consensus 82 ID~Lt~~~~n~l~~--~~~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 82 VDCLTTWVTNLLFE--EGEEAIAAEIDALLAALQQ 114 (170)
T ss_pred ehhHHHHHHHHhcc--cchHHHHHHHHHHHHHHHc
Confidence 99998886543210 0002234455666666653
No 359
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.20 E-value=0.0031 Score=61.89 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEech-hhHHhhhhh-------------hhhHHHHHHHHHHhC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS-EFVEMFVGV-------------GASRVRDLFKKAKEN 322 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~s-e~~~~~vG~-------------~~~~vr~lf~~a~~~ 322 (500)
.+.|+.||||+|||++.|-+|+-+ ...+..++-+ ++..-..|. ..-.-..+....+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm 217 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSM 217 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhc
Confidence 378999999999999999998854 2334444432 332211111 111224456666788
Q ss_pred CCeEEEEcCcch
Q 010809 323 APCIVFVDEIDA 334 (500)
Q Consensus 323 ~p~IIfIDEID~ 334 (500)
.|.||++|||..
T Consensus 218 ~PEViIvDEIGt 229 (308)
T COG3854 218 SPEVIIVDEIGT 229 (308)
T ss_pred CCcEEEEecccc
Confidence 999999999944
No 360
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.19 E-value=0.0022 Score=73.15 Aligned_cols=115 Identities=23% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEechhhHH-hh---hhh------------hhhHHHHHHHHHHh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGSEFVE-MF---VGV------------GASRVRDLFKKAKE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~se~~~-~~---vG~------------~~~~vr~lf~~a~~ 321 (500)
......++++||||||||+|+..++. ..+.++++++..+-.. .+ .|. .+..+..+-...+.
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~ 136 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRS 136 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhc
Confidence 33444689999999999999977644 3467788887664322 00 111 11111111122344
Q ss_pred CCCeEEEEcCcchhhhc-cCCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 322 NAPCIVFVDEIDAVGRQ-RGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~~-r~~~~~~~~--~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
..+.+|+||-+.++..+ .-.+..+.. ...++.+.++|..+..+-...++.+|.+
T Consensus 137 ~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~T 193 (790)
T PRK09519 137 GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFI 193 (790)
T ss_pred CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 57899999999999752 222111111 2233444565655554444455666655
No 361
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.19 E-value=0.0054 Score=60.73 Aligned_cols=135 Identities=13% Similarity=0.054 Sum_probs=93.1
Q ss_pred CceEEEEcCCC-ChHHHHHHHHHHhcCC--------C-EEEEechhhHHhh-hhhhhhHHHHHHHHHH----hCCCeEEE
Q 010809 264 PKGVLLVGPPG-TGKTLLAKAIAGEAGV--------P-FFSISGSEFVEMF-VGVGASRVRDLFKKAK----ENAPCIVF 328 (500)
Q Consensus 264 p~gvLL~GppG-TGKT~LAralA~e~~~--------p-fi~is~se~~~~~-vG~~~~~vr~lf~~a~----~~~p~IIf 328 (500)
....|+.|..+ ++|..++..++...-. | ++.+....-.... -.-+.+.+|++.+.+. .....|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 34789999998 9999999888775522 2 3333221100000 0123456777666653 23457999
Q ss_pred EcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHH
Q 010809 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTE 408 (500)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~ 408 (500)
||++|.+ ..++.|.||+-+++ ++.++++|..|+.++.+.+.+++ |+. .+.++.|+...-.+
T Consensus 95 I~~ae~m--------------t~~AANALLKtLEE--PP~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e 155 (263)
T PRK06581 95 IYSAELM--------------NLNAANSCLKILED--APKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNE 155 (263)
T ss_pred EechHHh--------------CHHHHHHHHHhhcC--CCCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHH
Confidence 9999999 24567888988884 66778888888889999999999 884 78999999887777
Q ss_pred HHHHHhcCC
Q 010809 409 ILKVHGSNK 417 (500)
Q Consensus 409 IL~~~l~~~ 417 (500)
.....+...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 666555443
No 362
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.17 E-value=0.0004 Score=65.05 Aligned_cols=39 Identities=23% Similarity=0.472 Sum_probs=32.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+-++|.|+||+|||++|++++.+.+.+++.++...+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 368999999999999999999999888887766555543
No 363
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.17 E-value=0.003 Score=57.94 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=22.3
Q ss_pred eEEEEcCCCChHHH-HHHHHHHhcC----CCEEEEec
Q 010809 266 GVLLVGPPGTGKTL-LAKAIAGEAG----VPFFSISG 297 (500)
Q Consensus 266 gvLL~GppGTGKT~-LAralA~e~~----~pfi~is~ 297 (500)
.+++.||+|+|||. ++..+..... .+++.+..
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 79999999999999 5555544332 34665555
No 364
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.17 E-value=0.00085 Score=69.72 Aligned_cols=70 Identities=23% Similarity=0.363 Sum_probs=46.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEe-chhhHH--------hh-----hhhhhhHHHHHHHHHHhCCCeEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSIS-GSEFVE--------MF-----VGVGASRVRDLFKKAKENAPCIV 327 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is-~se~~~--------~~-----vG~~~~~vr~lf~~a~~~~p~II 327 (500)
.++++++|++|+|||++++++...... .++.+. ..|+.- .+ .+...-...++++.+.+..|..|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 348999999999999999999886632 222221 011110 00 01122346788888989999999
Q ss_pred EEcCcc
Q 010809 328 FVDEID 333 (500)
Q Consensus 328 fIDEID 333 (500)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999983
No 365
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.0039 Score=65.67 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=65.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--CCCEEEEechhhHHhhhhh--------------hhhHHHHHHHHHHhCCCeEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA--GVPFFSISGSEFVEMFVGV--------------GASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~--~~pfi~is~se~~~~~vG~--------------~~~~vr~lf~~a~~~~p~IIfI 329 (500)
-+|+-|.||.|||||.-.+|..+ ..+++|+++.+-....-.. .+-++.++.+.+....|.+++|
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p~lvVI 174 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKPDLVVI 174 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCCCEEEE
Confidence 47888999999999998887654 3389999998776543211 2345788888888899999999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
|-|+.+....-.+..|+-....+.-++|..
T Consensus 175 DSIQT~~s~~~~SapGsVsQVRe~t~~L~~ 204 (456)
T COG1066 175 DSIQTLYSEEITSAPGSVSQVREVAAELMR 204 (456)
T ss_pred eccceeecccccCCCCcHHHHHHHHHHHHH
Confidence 999999765533333333333333344433
No 366
>PTZ00035 Rad51 protein; Provisional
Probab=97.16 E-value=0.0022 Score=66.87 Aligned_cols=115 Identities=22% Similarity=0.250 Sum_probs=64.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhh------HHhh--hhhh--------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF------VEMF--VGVG-------------- 308 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~------~~~~--vG~~-------------- 308 (500)
|.....-+.|+||||+|||+++..+|... +..++|++..+- .... .+..
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 33444457899999999999999987533 345677776541 1110 0000
Q ss_pred -----hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 309 -----~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
...+..+........+.+|+||=|-++.+....+. +...++++.+.+++..+..+....++.|+.+
T Consensus 194 ~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r~~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~vavvvt 264 (337)
T PTZ00035 194 NHEHQMQLLSQAAAKMAEERFALLIVDSATALFRVDYSGR-GELAERQQHLGKFLRALQKLADEFNVAVVIT 264 (337)
T ss_pred CHHHHHHHHHHHHHHhhccCccEEEEECcHHhhhhhccCc-ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence 01111222222345678999999999865432211 1233456667777666654433445555544
No 367
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.16 E-value=0.0033 Score=63.28 Aligned_cols=94 Identities=21% Similarity=0.303 Sum_probs=55.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEec-hhhHHh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISG-SEFVEM 303 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~-se~~~~ 303 (500)
.+++++.-.++..+.+++++. .+. ..+++.||+|+|||++++++..+.. ..++.+.- .|+.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---~~~----------GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---KPH----------GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---cCC----------CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 466776544444444444332 221 1489999999999999999977653 23444321 111100
Q ss_pred -----hhh-hhhhHHHHHHHHHHhCCCeEEEEcCcch
Q 010809 304 -----FVG-VGASRVRDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 304 -----~vG-~~~~~vr~lf~~a~~~~p~IIfIDEID~ 334 (500)
.+. .......+++..+.+..|.+|+++|+..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 011 1112456777778888999999999943
No 368
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.13 E-value=0.0046 Score=73.84 Aligned_cols=135 Identities=22% Similarity=0.276 Sum_probs=92.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH------Hhhhhhhhh---HHHHHHHHHHhCCCeEEEEcCcchhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV------EMFVGVGAS---RVRDLFKKAKENAPCIVFVDEIDAVG 336 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~------~~~vG~~~~---~vr~lf~~a~~~~p~IIfIDEID~l~ 336 (500)
.+||.||+.+|||...+.+|.+.|..|++|+-.+.. ..|+..... --..++-.|.++. ..|++||+.-.
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 499999999999999999999999999999876443 233322111 1123333443332 47889999654
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcC---------CCCCCCeEEEEeeCCCC------CCchhhcCCCCcceEEEecCC
Q 010809 337 RQRGTGIGGGNDEREQTLNQLLTEMDG---------FEGNTGIIVIAATNRAD------ILDSALLRPGRFDRQVTVDVP 401 (500)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emd~---------~~~~~~viVIaaTN~~~------~Ld~aLlrpgRfdr~I~v~~P 401 (500)
....-++||.||..-.. ..+++++.+.||-|+|- .|..|++. ||- .+++.--
T Consensus 968 ----------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN--RFl-E~hFddi 1034 (4600)
T COG5271 968 ----------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN--RFL-EMHFDDI 1034 (4600)
T ss_pred ----------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh--hhH-hhhcccC
Confidence 33456778888764322 13456788889889776 47778887 885 6777777
Q ss_pred CHHHHHHHHHHHhc
Q 010809 402 DIRGRTEILKVHGS 415 (500)
Q Consensus 402 d~~eR~~IL~~~l~ 415 (500)
..++...||...++
T Consensus 1035 pedEle~ILh~rc~ 1048 (4600)
T COG5271 1035 PEDELEEILHGRCE 1048 (4600)
T ss_pred cHHHHHHHHhccCc
Confidence 77888888876553
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.13 E-value=0.0035 Score=58.89 Aligned_cols=106 Identities=17% Similarity=0.169 Sum_probs=60.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-----h---h---------hhhhhhHHHHHHHHHHhCCCeEEEE
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-----M---F---------VGVGASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-----~---~---------vG~~~~~vr~lf~~a~~~~p~IIfI 329 (500)
+|++|++|+|||++|..++.+.+.+++|+.-..-.+ . . ..+....+.+.++... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 689999999999999999988777888886542211 1 0 0111123334333222 4568999
Q ss_pred cCcchhhhccCCCCCCC-ChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 330 DEIDAVGRQRGTGIGGG-NDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~-~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
|-+..+..+.-...... .+...+.+..|+..+.. .+.-+|..+|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~----~~~~~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN----KPGTLILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc----CCCcEEEEECC
Confidence 99988865543210000 02223455666666653 22334444564
No 370
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.13 E-value=0.0049 Score=58.31 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=65.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-------------CEEEEechhhHHhhhhh-------------hhhHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-------------PFFSISGSEFVEMFVGV-------------GASRVRDLFKK 318 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~-------------pfi~is~se~~~~~vG~-------------~~~~vr~lf~~ 318 (500)
.-+.|.||.|+|||||.+++....|. ++.++.-.++.+.+ +. +..+.|-.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~-~L~~~~~~~~~~~LSgGq~qrl~lar 100 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDV-GLGYLTLGQKLSTLSGGELQRVKLAS 100 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHc-CCCccccCCCcCcCCHHHHHHHHHHH
Confidence 35889999999999999999743221 23333222222221 10 11234445555
Q ss_pred HHhCC--CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEE
Q 010809 319 AKENA--PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 396 (500)
Q Consensus 319 a~~~~--p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I 396 (500)
+.... |.++++||.-.- -+.+..+.+.+++.++.. .+..||.+|..++. .+ .+|+.+
T Consensus 101 al~~~~~p~llLlDEPt~~----------LD~~~~~~l~~~l~~~~~----~g~tvIivSH~~~~-----~~--~~d~i~ 159 (176)
T cd03238 101 ELFSEPPGTLFILDEPSTG----------LHQQDINQLLEVIKGLID----LGNTVILIEHNLDV-----LS--SADWII 159 (176)
T ss_pred HHhhCCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHHH-----HH--hCCEEE
Confidence 65667 899999998543 244455556666665531 24456667766542 23 466666
Q ss_pred EecC
Q 010809 397 TVDV 400 (500)
Q Consensus 397 ~v~~ 400 (500)
.+..
T Consensus 160 ~l~~ 163 (176)
T cd03238 160 DFGP 163 (176)
T ss_pred EECC
Confidence 6643
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.13 E-value=0.0034 Score=68.51 Aligned_cols=77 Identities=21% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh--------------h--------------h
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV--------------G--------------A 309 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~--------------~--------------~ 309 (500)
......+|+.||||+|||+|+-.++.+. +-+.+|++..+-.+.+... + .
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 3333458999999999999999997754 6788999877654432111 0 2
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 010809 310 SRVRDLFKKAKENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 310 ~~vr~lf~~a~~~~p~IIfIDEID~l~~ 337 (500)
..+..+.+......|.+|+||-+..+..
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 3345555666667889999999998743
No 372
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.13 E-value=0.0009 Score=69.21 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=45.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe-chhhHHh------hhhhhhhHHHHHHHHHHhCCCeEEEEcCc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFVEM------FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is-~se~~~~------~vG~~~~~vr~lf~~a~~~~p~IIfIDEI 332 (500)
++++++|++|+|||+++++++.+. +..++.+. ..|+.-. +.....-...++++.+.+..|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 489999999999999999998865 22333322 1121100 01112234677888888899999999998
No 373
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.12 E-value=0.0091 Score=59.26 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=73.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhHH---hh-----hhh-----h-h---hH----HHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE---MF-----VGV-----G-A---SR----VRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~~---~~-----vG~-----~-~---~~----vr~lf~~a 319 (500)
.|-.+++.|++|||||++++.+...... ..+.+-+..... .| +.. . . .+ +.+.....
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 3446999999999999999999765532 222222111111 11 000 0 0 01 11111111
Q ss_pred Hh---CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEE
Q 010809 320 KE---NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQV 396 (500)
Q Consensus 320 ~~---~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I 396 (500)
.. ..+++|++||+-. .....+.+.+++.. ..+-++-+|..+...-.+++.++. -.+..+
T Consensus 92 ~~~k~~~~~LiIlDD~~~------------~~~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~--n~~y~i 153 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGD------------KKLKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRS--NIDYFI 153 (241)
T ss_pred cccCCCCCeEEEEeCCCC------------chhhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhh--cceEEE
Confidence 11 3368999999722 11234556666653 234567788888888889999876 566666
Q ss_pred EecCCCHHHHHHHHHHH
Q 010809 397 TVDVPDIRGRTEILKVH 413 (500)
Q Consensus 397 ~v~~Pd~~eR~~IL~~~ 413 (500)
.++ -+..+..-|++..
T Consensus 154 ~~~-~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNM 169 (241)
T ss_pred Eec-CcHHHHHHHHHhc
Confidence 565 4555555555543
No 374
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.12 E-value=0.0031 Score=63.88 Aligned_cols=40 Identities=25% Similarity=0.419 Sum_probs=30.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
++-+++.|+||||||++|+.++.+.. .+..++..++....
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~r~~~ 41 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDLRQSL 41 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHHHHHh
Confidence 44689999999999999999999983 34556666665443
No 375
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.12 E-value=0.0017 Score=62.49 Aligned_cols=108 Identities=27% Similarity=0.410 Sum_probs=58.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH-------Hhh---hhh----------hhhHHHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV-------EMF---VGV----------GASRVRDLFKKAK 320 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~-------~~~---vG~----------~~~~vr~lf~~a~ 320 (500)
|+-++|+||+|+|||+.+-.+|..+ +..+-.+++..+. ..| .+. ..+..++.++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 5679999999999999998887754 4555555544331 111 111 1123445556665
Q ss_pred hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
...-.+|+||=.-.- ..+.+..+-+.+++..+ .+..-.+|+.++...+.++
T Consensus 81 ~~~~D~vlIDT~Gr~---------~~d~~~~~el~~~~~~~---~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRS---------PRDEELLEELKKLLEAL---NPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HTTSSEEEEEE-SSS---------STHHHHHHHHHHHHHHH---SSSEEEEEEEGGGGGHHHH
T ss_pred hcCCCEEEEecCCcc---------hhhHHHHHHHHHHhhhc---CCccceEEEecccChHHHH
Confidence 555579998875322 11223334455555555 2233345555555555554
No 376
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.11 E-value=0.0038 Score=56.80 Aligned_cols=97 Identities=26% Similarity=0.304 Sum_probs=55.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEech---hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhcc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGS---EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQR 339 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~s---e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r 339 (500)
..+.|.||+|+|||+|++++++.... --+.+++. .++..+. .+ .+-+-.+..+....|.++++||-..-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS-~G-~~~rv~laral~~~p~illlDEP~~~---- 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS-GG-EKMRLALAKLLLENPNLLLLDEPTNH---- 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC-HH-HHHHHHHHHHHhcCCCEEEEeCCccC----
Confidence 36889999999999999999996521 00111110 0000011 11 22333455556678899999998543
Q ss_pred CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 340 GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 340 ~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
-+......+.+++.++. ..++.+|+..+
T Consensus 101 ------LD~~~~~~l~~~l~~~~-------~til~~th~~~ 128 (144)
T cd03221 101 ------LDLESIEALEEALKEYP-------GTVILVSHDRY 128 (144)
T ss_pred ------CCHHHHHHHHHHHHHcC-------CEEEEEECCHH
Confidence 23344455555665541 24666666644
No 377
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.10 E-value=0.00045 Score=64.70 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=29.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
++++||||+|||++|+.+|.+.+.+ .++.++++...
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHHHHH
Confidence 6899999999999999999999854 45666665443
No 378
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.10 E-value=0.0027 Score=61.19 Aligned_cols=124 Identities=25% Similarity=0.424 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHH
Q 010809 241 QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK 320 (500)
Q Consensus 241 ~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~ 320 (500)
.-+..+|....+| |.+....++|.|+-|+|||+..+.++.+ ++ .+... .... ++....+.
T Consensus 35 ~wl~~~Var~~~p------g~k~d~~lvl~G~QG~GKStf~~~L~~~----~~-~d~~~------~~~~---kd~~~~l~ 94 (198)
T PF05272_consen 35 KWLVGAVARAYEP------GCKNDTVLVLVGKQGIGKSTFFRKLGPE----YF-SDSIN------DFDD---KDFLEQLQ 94 (198)
T ss_pred HHHHHHHHHHhCC------CCcCceeeeEecCCcccHHHHHHHHhHH----hc-cCccc------cCCC---cHHHHHHH
Confidence 3444444444444 4555667899999999999999999666 22 11100 0000 11122222
Q ss_pred hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh-cCCCC---------CCCeEEEEeeCCCCCC-chhhcCC
Q 010809 321 ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM-DGFEG---------NTGIIVIAATNRADIL-DSALLRP 389 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em-d~~~~---------~~~viVIaaTN~~~~L-d~aLlrp 389 (500)
.. -|+.|||++.+.+ .....+..++..- +.+.. +...++|+|||..+.| |+.--|
T Consensus 95 ~~--~iveldEl~~~~k-----------~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnR- 160 (198)
T PF05272_consen 95 GK--WIVELDELDGLSK-----------KDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR- 160 (198)
T ss_pred Hh--HheeHHHHhhcch-----------hhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCe-
Confidence 22 3899999999842 1234556665542 22211 1247889999998755 444556
Q ss_pred CCcceEEEecC
Q 010809 390 GRFDRQVTVDV 400 (500)
Q Consensus 390 gRfdr~I~v~~ 400 (500)
|| ..+.+..
T Consensus 161 -Rf-~~v~v~~ 169 (198)
T PF05272_consen 161 -RF-WPVEVSK 169 (198)
T ss_pred -EE-EEEEEcC
Confidence 88 4666654
No 379
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.10 E-value=0.0012 Score=67.80 Aligned_cols=69 Identities=23% Similarity=0.426 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhHHhh---------------hhhhhhHHHHHHHHHHhCCCe
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEMF---------------VGVGASRVRDLFKKAKENAPC 325 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~~~~---------------vG~~~~~vr~lf~~a~~~~p~ 325 (500)
...++++.||+|+|||++++++++.... ..+.+ .+-.+.. .+...-...+++..+.+..|.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i--ed~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd 220 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI--EDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPD 220 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE--cCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCC
Confidence 3458999999999999999999987632 22222 1111100 011123456788888888999
Q ss_pred EEEEcCcc
Q 010809 326 IVFVDEID 333 (500)
Q Consensus 326 IIfIDEID 333 (500)
+|++||+-
T Consensus 221 ~ii~gE~r 228 (308)
T TIGR02788 221 RIILGELR 228 (308)
T ss_pred eEEEeccC
Confidence 99999993
No 380
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.0004 Score=63.56 Aligned_cols=34 Identities=41% Similarity=0.827 Sum_probs=29.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
++|++|-||||||+++..+|...+.+++.+ ++++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~i--sd~v 42 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEI--SDLV 42 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEeh--hhHH
Confidence 699999999999999999999999887754 5554
No 381
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.09 E-value=0.0041 Score=58.89 Aligned_cols=102 Identities=19% Similarity=0.128 Sum_probs=55.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhh--H-HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--V-EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~--~-~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~ 340 (500)
-+.|.||.|+|||||.+.+++.... =-+.+++..+ . ....-.+..+.|-.+..+....|.++++||--.-
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~----- 101 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAY----- 101 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCccc-----
Confidence 5889999999999999999986421 0111221110 0 0000111223444555566678899999998542
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
-+....+.+.+++.++. ...+..+|.+|...+
T Consensus 102 -----LD~~~~~~l~~~l~~~~---~~~~~tiiivsH~~~ 133 (177)
T cd03222 102 -----LDIEQRLNAARAIRRLS---EEGKKTALVVEHDLA 133 (177)
T ss_pred -----CCHHHHHHHHHHHHHHH---HcCCCEEEEEECCHH
Confidence 23344455555555542 122234555665543
No 382
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=97.09 E-value=0.0019 Score=66.61 Aligned_cols=115 Identities=20% Similarity=0.244 Sum_probs=63.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc------C---CCEEEEechhh-H-----Hhh--hhhh--------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA------G---VPFFSISGSEF-V-----EMF--VGVG-------------- 308 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~------~---~pfi~is~se~-~-----~~~--vG~~-------------- 308 (500)
|.....-+.++||||+|||+++..+|..+ + ..+++++..+- . ... .+..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 33444458899999999999999987532 1 36688877652 1 100 0100
Q ss_pred -hh----HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 309 -AS----RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 309 -~~----~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.. .+..+........+.+|+||-|-++.+....+. +...++++.+.+++..+..+....++.|+.+
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~~~~~~-~~~~~rq~~l~~~~~~L~~la~~~~vavv~t 242 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRTDFSGR-GELSARQMHLARFLRSLQRLADEFGVAVVIT 242 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhhhcCCc-chHHHHHHHHHHHHHHHHHHHHHhCCEEEEE
Confidence 01 112222222345678999999999865432211 1122344556666666654444445555554
No 383
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0081 Score=64.13 Aligned_cols=115 Identities=16% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhHH-------hh---hhh---hhhHHHHHHHHHHhCCCe
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE-------MF---VGV---GASRVRDLFKKAKENAPC 325 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~~-------~~---vG~---~~~~vr~lf~~a~~~~p~ 325 (500)
.+.-+++.||+|+|||+++..+|... +..+..+++..+.. .| .+. ....+.++.+.+......
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 34568899999999999999998754 44565566554322 11 111 112234444444444557
Q ss_pred EEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhh
Q 010809 326 IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (500)
Q Consensus 326 IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aL 386 (500)
+|+||=.-.. ..+...-..+..++.......+...++|+.+|...+.+....
T Consensus 302 ~VLIDTaGr~---------~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 302 LILIDTAGYS---------HRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred EEEEeCCCCC---------ccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 8888753211 012222233333333332112234567777776665554443
No 384
>PRK06217 hypothetical protein; Validated
Probab=97.08 E-value=0.00051 Score=64.86 Aligned_cols=31 Identities=26% Similarity=0.533 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
.|+|.|+||+|||++|++++..++.|++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999999987654
No 385
>PRK14531 adenylate kinase; Provisional
Probab=97.08 E-value=0.00057 Score=64.57 Aligned_cols=36 Identities=28% Similarity=0.622 Sum_probs=29.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..++++||||+|||++++.+|...+.+++ ++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 35999999999999999999999987765 4455543
No 386
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.08 E-value=0.005 Score=67.20 Aligned_cols=42 Identities=29% Similarity=0.311 Sum_probs=32.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEechhhH
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFV 301 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e----~~~pfi~is~se~~ 301 (500)
|......+|+.||||||||++|..++.+ .+.+.++++..+-.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~ 62 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP 62 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH
Confidence 4455567999999999999999988442 36789888876443
No 387
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.0023 Score=58.60 Aligned_cols=103 Identities=30% Similarity=0.414 Sum_probs=59.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC--EEEEechhhHH-------hhhh-----hhhhHHHHHHHHHHhCCCeEEEEc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEFVE-------MFVG-----VGASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~p--fi~is~se~~~-------~~vG-----~~~~~vr~lf~~a~~~~p~IIfID 330 (500)
..+.|.||+|+|||+|.+++++..... -+++++.+... ..++ .+....+-.+..+....|.++++|
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD 105 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD 105 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 368999999999999999999976321 12333322110 0011 111233344555556678999999
Q ss_pred CcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
|...= -+.+....+.+++.++.. . +..++.+|...+.
T Consensus 106 Ep~~~----------lD~~~~~~l~~~l~~~~~---~-~~tii~~sh~~~~ 142 (157)
T cd00267 106 EPTSG----------LDPASRERLLELLRELAE---E-GRTVIIVTHDPEL 142 (157)
T ss_pred CCCcC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEEeCCHHH
Confidence 98653 233445566666665532 2 3456666666543
No 388
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.08 E-value=0.00087 Score=64.98 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=69.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~ 344 (500)
-.+|+||+|||||.+|-++|++.+.|++..+.-..-. .-+|.+.... .+. +..+ =+++||-..-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~----~el-~~~~-RiyL~~r~l~--------- 67 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTP----SEL-KGTR-RIYLDDRPLS--------- 67 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---S----GGG-TT-E-EEES----GG---------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCH----HHH-cccc-eeeecccccc---------
Confidence 3689999999999999999999999999887644332 2234322111 111 1122 2788875332
Q ss_pred CCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcC---CCCcce-EEEecCCCHHHHHHHHHHHhcCCCCC
Q 010809 345 GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLR---PGRFDR-QVTVDVPDIRGRTEILKVHGSNKKFD 420 (500)
Q Consensus 345 ~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlr---pgRfdr-~I~v~~Pd~~eR~~IL~~~l~~~~l~ 420 (500)
.|.-..++....|+..++.+....++|+=+.+.. .|..-..+ ...|.. +..++.||.+.-..-.+...+++-..
T Consensus 68 ~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 68 DGIINAEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp G-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred CCCcCHHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 2344456677778888888777555555444321 11111111 013433 55778888876555444444332211
Q ss_pred ---ccccHHHHHHhCC
Q 010809 421 ---ADVSLDVIAMRTP 433 (500)
Q Consensus 421 ---~dvdl~~la~~t~ 433 (500)
..--+++++..+.
T Consensus 146 ~~~~~Sll~EL~~lW~ 161 (233)
T PF01745_consen 146 DSSGPSLLEELVALWN 161 (233)
T ss_dssp -SSS--HHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHh
Confidence 1122556665543
No 389
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.08 E-value=0.0031 Score=63.65 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=109.7
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhH
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~ 311 (500)
+++=.+++.+.+-.+.+-+..|. .+.||.|.+|+||++++|..|.-++..++.+..+.-.. ...-.+.
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~----------Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR----------GHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT----------EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC----------CCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 56677888999888888888764 27999999999999999999999999999887543111 1122345
Q ss_pred HHHHHHHH-HhCCCeEEEEcCcchh-----------hhccCCCCCCCChHHHHHHHHHHHHhcC--CCC-----------
Q 010809 312 VRDLFKKA-KENAPCIVFVDEIDAV-----------GRQRGTGIGGGNDEREQTLNQLLTEMDG--FEG----------- 366 (500)
Q Consensus 312 vr~lf~~a-~~~~p~IIfIDEID~l-----------~~~r~~~~~~~~~e~~~~L~~LL~emd~--~~~----------- 366 (500)
++.++..| .++.|.+++|+|-+-. .....-..--..+|.+..+.++-..... +..
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~ 156 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIE 156 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHH
Confidence 66666655 3556888888874432 1111100011356677777766554421 111
Q ss_pred --CCCeEEEEe-eCCCCCC------chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcH
Q 010809 367 --NTGIIVIAA-TNRADIL------DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSG 437 (500)
Q Consensus 367 --~~~viVIaa-TN~~~~L------d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sg 437 (500)
..+.-||.+ +...+.+ -|+|.+ +.. ...+..-+.+....+-+.+++.....++...+.++.. .
T Consensus 157 rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~--~ct-IdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~-----~ 228 (268)
T PF12780_consen 157 RVRKNLHIVLCMSPVGPNFRDRCRSFPALVN--CCT-IDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEI-----M 228 (268)
T ss_dssp HHCCCEEEEEEESTTTTCCCHHHHHHCCHHH--HSE-EEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHH-----H
T ss_pred HHHhheeEEEEECCCCchHHHHHHhCcchhc--ccE-EEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHH-----H
Confidence 122333333 2222222 245554 343 4556666677777777777765432221112223221 1
Q ss_pred HHHHHHHHHHHHHHHH--cCCCCcCHHHHHHHHH
Q 010809 438 ADLANLLNEAAILAGR--RGKAAISSKEIDDSID 469 (500)
Q Consensus 438 adL~~lv~eAa~~A~r--~~~~~It~~d~~~Ai~ 469 (500)
..+-.-+.+.+..-.+ +....||+..+.+-+.
T Consensus 229 ~~iH~sv~~~s~~y~~~~~r~~yvTP~syL~~i~ 262 (268)
T PF12780_consen 229 VFIHQSVEEISRKYLQELRRYNYVTPKSYLEFIK 262 (268)
T ss_dssp HHHHHHHHHHHHHHHHHCS------HHHHHHHHH
T ss_pred HHHhccchHhHHHHHHHcCCcceECcHHHHHHHh
Confidence 2232333333222222 2335688887766654
No 390
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.07 E-value=0.00089 Score=69.20 Aligned_cols=68 Identities=28% Similarity=0.402 Sum_probs=45.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEe-chhhH---Hh---hhhhhhhHHHHHHHHHHhCCCeEEEEcCc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSIS-GSEFV---EM---FVGVGASRVRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is-~se~~---~~---~vG~~~~~vr~lf~~a~~~~p~IIfIDEI 332 (500)
++++++|++|+|||+++++++.+. ...++.+. ..++. .. +.....-...++++.+.+..|..|++.|+
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEi 228 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEV 228 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 379999999999999999999763 12233221 11111 00 00111235678888898999999999998
No 391
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.008 Score=63.71 Aligned_cols=72 Identities=17% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH----Hhhh------------hhhhhHHHHHHHHHHh-C
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----EMFV------------GVGASRVRDLFKKAKE-N 322 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~----~~~v------------G~~~~~vr~lf~~a~~-~ 322 (500)
.|+-++|.||+|+|||+++..+|..+ +..+..+++..+. +.+. ......+.+.+..++. .
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 35679999999999999999998765 4456666654331 1111 1233445555555543 2
Q ss_pred CCeEEEEcCcch
Q 010809 323 APCIVFVDEIDA 334 (500)
Q Consensus 323 ~p~IIfIDEID~ 334 (500)
...+||||-.-.
T Consensus 320 ~~DvVLIDTaGR 331 (436)
T PRK11889 320 RVDYILIDTAGK 331 (436)
T ss_pred CCCEEEEeCccc
Confidence 346888887633
No 392
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.06 E-value=0.00053 Score=61.36 Aligned_cols=30 Identities=33% Similarity=0.757 Sum_probs=27.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+.+.|+||+|||++|+.+|..++.|++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998765
No 393
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0026 Score=59.30 Aligned_cols=103 Identities=26% Similarity=0.350 Sum_probs=58.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhH--------Hh--hh---------------hhhhhHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFV--------EM--FV---------------GVGASRVRDLFK 317 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~--------~~--~v---------------G~~~~~vr~lf~ 317 (500)
..+.|.||+|+|||+|.+.+++.... =-+.+++.+.. .. |+ -.+..+.|-.+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 36899999999999999999996521 01122221110 00 00 001122233455
Q ss_pred HHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 318 ~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
.+....|.++++||--+- -+....+.+.+++.++.. +..+|.+|+.++.+
T Consensus 109 ~al~~~p~llllDEP~~g----------LD~~~~~~l~~~l~~~~~-----~~tii~~sh~~~~~ 158 (171)
T cd03228 109 RALLRDPPILILDEATSA----------LDPETEALILEALRALAK-----GKTVIVIAHRLSTI 158 (171)
T ss_pred HHHhcCCCEEEEECCCcC----------CCHHHHHHHHHHHHHhcC-----CCEEEEEecCHHHH
Confidence 555678999999997542 234445666666666531 24666677765543
No 394
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.05 E-value=0.0023 Score=58.55 Aligned_cols=36 Identities=28% Similarity=0.627 Sum_probs=30.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
++++|+||+|||++|+.++..+ +.+.+.++...+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~ 40 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRH 40 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 6899999999999999999987 66777787766554
No 395
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0019 Score=62.36 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~ 288 (500)
++|+|+||+|||++|+-+|+++
T Consensus 4 iIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHH
Confidence 7899999999999999999977
No 396
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.02 E-value=0.0044 Score=58.72 Aligned_cols=19 Identities=26% Similarity=0.572 Sum_probs=18.1
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 010809 267 VLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA 285 (500)
++|+||.|+|||++.|.++
T Consensus 2 ~~ltG~N~~GKst~l~~i~ 20 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVG 20 (185)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 6899999999999999997
No 397
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=97.01 E-value=0.0028 Score=66.09 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=65.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh------hHHhh--hhhh---------------h
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE------FVEMF--VGVG---------------A 309 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se------~~~~~--vG~~---------------~ 309 (500)
....-+.++|+||+|||.++..+|-.+ +.+++|++..+ +.+.. .+.. .
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~~~ 200 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNT 200 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecCCH
Confidence 333457899999999999999887432 23688888765 11110 0100 0
Q ss_pred hH----HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 310 SR----VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 310 ~~----vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.. +..+........+.+|+||=|-++.+....+. +...++++.+.+++..+..+....++.|+.+.
T Consensus 201 e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~~~~~~-g~l~~r~~~L~~~l~~L~~lA~~~~vaVviTN 270 (342)
T PLN03186 201 DHQSELLLEAASMMAETRFALMIVDSATALYRTEFSGR-GELSARQMHLGKFLRSLQRLADEFGVAVVITN 270 (342)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 11 11121223445688999999999876432211 12334556677777766655444556666553
No 398
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.00 E-value=0.00076 Score=66.46 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|..++|.||||+||||+|+.+|+..+++++.+ .+++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdllr 42 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNILR 42 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHHH
Confidence 445699999999999999999999999877654 44443
No 399
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.99 E-value=0.0035 Score=65.54 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 400
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.99 E-value=0.003 Score=62.18 Aligned_cols=33 Identities=30% Similarity=0.330 Sum_probs=26.2
Q ss_pred EEEEcCCCChHHHHHHHHHHh---------------cCCCEEEEechh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGE---------------AGVPFFSISGSE 299 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e---------------~~~pfi~is~se 299 (500)
.+|+||||+|||+|+..+|-. -+.+++++++.+
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 589999999999999999753 135688888664
No 401
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.98 E-value=0.0013 Score=68.61 Aligned_cols=70 Identities=26% Similarity=0.411 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEec-hhhHH-------h-----hhhhhhhHHHHHHHHHHhCCCeEE
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISG-SEFVE-------M-----FVGVGASRVRDLFKKAKENAPCIV 327 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~-se~~~-------~-----~vG~~~~~vr~lf~~a~~~~p~II 327 (500)
..+++++.||+|+|||++++++++.... .++.+.- .++.- . ..+.+.-...++++.+.+..|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 3458999999999999999999987532 2222211 11100 0 011222346678888888899999
Q ss_pred EEcCc
Q 010809 328 FVDEI 332 (500)
Q Consensus 328 fIDEI 332 (500)
++.|+
T Consensus 241 ivGEi 245 (344)
T PRK13851 241 LLGEM 245 (344)
T ss_pred EEEee
Confidence 99998
No 402
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.98 E-value=0.00067 Score=63.94 Aligned_cols=35 Identities=37% Similarity=0.743 Sum_probs=28.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
|+|+||||+|||++|+.+|.+.+++++ +..+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~~ 36 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLRE 36 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHHH
Confidence 799999999999999999999887664 45555543
No 403
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.98 E-value=0.0034 Score=58.64 Aligned_cols=101 Identities=26% Similarity=0.413 Sum_probs=58.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhh--------HHh--hh---------------hhhhhHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEM--FV---------------GVGASRVRDLFKK 318 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~--------~~~--~v---------------G~~~~~vr~lf~~ 318 (500)
-+.|.||+|+|||+|.+.+++.... =-+.+++.+. ... |+ -.+..+.|-.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la~ 109 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLAR 109 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHHH
Confidence 5899999999999999999986421 0111222111 000 00 0112234445566
Q ss_pred HHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 319 AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 319 a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
+....|.++++||.-+- -+....+.+.+++..+.. .+..+|.+|...+
T Consensus 110 al~~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~~~----~~~tii~~sh~~~ 157 (173)
T cd03246 110 ALYGNPRILVLDEPNSH----------LDVEGERALNQAIAALKA----AGATRIVIAHRPE 157 (173)
T ss_pred HHhcCCCEEEEECCccc----------cCHHHHHHHHHHHHHHHh----CCCEEEEEeCCHH
Confidence 66678999999997542 244455666666666532 2345666666543
No 404
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.97 E-value=0.0027 Score=65.27 Aligned_cols=34 Identities=32% Similarity=0.652 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
.++..|+|+|+||+|||++++.+|..++.||+.+
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~ 164 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVEL 164 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeH
Confidence 4456899999999999999999999999999943
No 405
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.96 E-value=0.00072 Score=61.32 Aligned_cols=33 Identities=33% Similarity=0.765 Sum_probs=27.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
++|+|+||+|||++|+.++...+.+++ +...+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~~ 34 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDLH 34 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCcccc
Confidence 689999999999999999999887665 444443
No 406
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.96 E-value=0.054 Score=55.76 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=70.0
Q ss_pred HHHHHHHHHhC---CCeEEEEcCcchhhhccCCC---CCCCChHHHHHHHHHHHHhcCCCC-CCCeEE--EEeeCC---C
Q 010809 312 VRDLFKKAKEN---APCIVFVDEIDAVGRQRGTG---IGGGNDEREQTLNQLLTEMDGFEG-NTGIIV--IAATNR---A 379 (500)
Q Consensus 312 vr~lf~~a~~~---~p~IIfIDEID~l~~~r~~~---~~~~~~e~~~~L~~LL~emd~~~~-~~~viV--IaaTN~---~ 379 (500)
+..++++.+.. .|.++-||++.++.....-. ...-+...-.....++..+.+-.. ..+.+| +++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 34455555332 46788899999997652111 011122223344444444332222 234444 555532 2
Q ss_pred C--CCchhhcCCC------Ccc-------------eEEEecCCCHHHHHHHHHHHhcCCCCCc----cccHHHHHHhCCC
Q 010809 380 D--ILDSALLRPG------RFD-------------RQVTVDVPDIRGRTEILKVHGSNKKFDA----DVSLDVIAMRTPG 434 (500)
Q Consensus 380 ~--~Ld~aLlrpg------Rfd-------------r~I~v~~Pd~~eR~~IL~~~l~~~~l~~----dvdl~~la~~t~G 434 (500)
. .++.++.... -|. ..+.++..+.+|-..+++.+....-+.. +.-.+.+...+.|
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~G 301 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNG 301 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCC
Confidence 2 4555554311 121 1688999999999999998876544432 2234555555566
Q ss_pred CcHHHHHH
Q 010809 435 FSGADLAN 442 (500)
Q Consensus 435 ~sgadL~~ 442 (500)
+++++..
T Consensus 302 -Np~el~k 308 (309)
T PF10236_consen 302 -NPRELEK 308 (309)
T ss_pred -CHHHhcc
Confidence 8888754
No 407
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.95 E-value=0.0036 Score=59.99 Aligned_cols=21 Identities=29% Similarity=0.407 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
-++|+||.|+|||++.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 589999999999999999983
No 408
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.95 E-value=0.0033 Score=66.32 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=45.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEec-hhhH-----------HhhhhhhhhHHHHHHHHHHhCCCeEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISG-SEFV-----------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~-----~pfi~is~-se~~-----------~~~vG~~~~~vr~lf~~a~~~~p~IIf 328 (500)
.++++||+|+|||++++++..+.. ..++.+.- .++. ..-+|.......+.++.+.+..|.+|+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999987652 33444321 1211 111222223456677777788999999
Q ss_pred EcCcc
Q 010809 329 VDEID 333 (500)
Q Consensus 329 IDEID 333 (500)
++|+-
T Consensus 231 vGEiR 235 (372)
T TIGR02525 231 VGEIR 235 (372)
T ss_pred eCCCC
Confidence 99993
No 409
>PRK13695 putative NTPase; Provisional
Probab=96.95 E-value=0.011 Score=55.11 Aligned_cols=23 Identities=43% Similarity=0.624 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.++|.|++|+|||++++.+++++
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999987764
No 410
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.94 E-value=0.0034 Score=62.84 Aligned_cols=109 Identities=26% Similarity=0.302 Sum_probs=64.4
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh-h--------HHhhhhhhh------------------h
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE-F--------VEMFVGVGA------------------S 310 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---------~~pfi~is~se-~--------~~~~vG~~~------------------~ 310 (500)
.=|+||||+|||.|+-.+|-.. +..++|++... | .+.+-.... .
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~ 120 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLE 120 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHH
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHH
Confidence 4589999999999999887544 33488887643 2 111100000 1
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.+..+-.........+|+||-|-++.+....+ .+...++.+.|.+++..+..+....++.||.|.
T Consensus 121 ~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTN 185 (256)
T PF08423_consen 121 LLEQLPKLLSESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTN 185 (256)
T ss_dssp HHHHHHHHHHHSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHhhccccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeec
Confidence 11222222234556899999999998754321 123456778888877776655555566666543
No 411
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.94 E-value=0.0092 Score=55.92 Aligned_cols=103 Identities=20% Similarity=0.240 Sum_probs=59.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhHH------h---hhh------------------hhhhHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVE------M---FVG------------------VGASRVRD 314 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~~------~---~vG------------------~~~~~vr~ 314 (500)
...+.|.||+|+|||+|++.+++.... --+.+++.+... . |+. .+..+.+-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv 107 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRL 107 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHH
Confidence 346899999999999999999986421 112222221100 0 000 01123344
Q ss_pred HHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 315 LFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 315 lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
.+..+....|.++++||.-.- -+....+.+.+++.++. + +..+|.+|..++.
T Consensus 108 ~laral~~~p~~lllDEP~~~----------LD~~~~~~l~~~l~~~~----~-~~tii~~sh~~~~ 159 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVG----------LDPITERQLLSLIFEVL----K-DKTLIWITHHLTG 159 (178)
T ss_pred HHHHHHhcCCCEEEEECCccc----------CCHHHHHHHHHHHHHHc----C-CCEEEEEecCHHH
Confidence 555566678999999998543 24445566667776653 1 2355556665543
No 412
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.93 E-value=0.0022 Score=60.36 Aligned_cols=73 Identities=27% Similarity=0.338 Sum_probs=41.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------------CCCEEEEechhhHH----hh---------------hh---h---
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSEFVE----MF---------------VG---V--- 307 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~-------------~~pfi~is~se~~~----~~---------------vG---~--- 307 (500)
-.+++||||+|||+++..++... +.++++++..+-.+ .+ .. .
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~~~~ 113 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNWGCI 113 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E-EE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeeccccccc
Confidence 37999999999999999986643 34778886653221 11 00 0
Q ss_pred -----------hhhHHHHHHHHHHh-CCCeEEEEcCcchhhhc
Q 010809 308 -----------GASRVRDLFKKAKE-NAPCIVFVDEIDAVGRQ 338 (500)
Q Consensus 308 -----------~~~~vr~lf~~a~~-~~p~IIfIDEID~l~~~ 338 (500)
....++.+.+.+.. ..+.+|+||-+..+...
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 114 RLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp ---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred eeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 01123445555555 56899999999999643
No 413
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.93 E-value=0.0057 Score=56.87 Aligned_cols=99 Identities=32% Similarity=0.479 Sum_probs=57.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC-----------CEEEEech------hhHHhh----hh--hhhhHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV-----------PFFSISGS------EFVEMF----VG--VGASRVRDLFKKAKE 321 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~-----------pfi~is~s------e~~~~~----vG--~~~~~vr~lf~~a~~ 321 (500)
.-+.|.||.|+|||+|++.+++.... .+.++... ...+.. .. .+..+.|-.+..+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~ 107 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL 107 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999986421 11111111 001110 00 112334445566666
Q ss_pred CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 322 NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
..|.++++||-.+- -+.+..+.+.+++.++ +..+|.+|.+++
T Consensus 108 ~~p~~lllDEPt~~----------LD~~~~~~l~~~l~~~-------~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSA----------LDEESEDRLYQLLKEL-------GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccc----------cCHHHHHHHHHHHHHh-------CCEEEEEeCChh
Confidence 78999999998553 2444556666666654 134566666653
No 414
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.92 E-value=0.00094 Score=61.99 Aligned_cols=30 Identities=37% Similarity=0.563 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
.++|+|++|+|||++++.+|+.++.||+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 689999999999999999999999998754
No 415
>PRK13764 ATPase; Provisional
Probab=96.92 E-value=0.0014 Score=72.95 Aligned_cols=69 Identities=19% Similarity=0.327 Sum_probs=41.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEe-chhh-----HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcch
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSIS-GSEF-----VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~---~pfi~is-~se~-----~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~ 334 (500)
+++|++||||+||||++++++..+. ..+..+. ..++ +..+... ........+.+....|.+|++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~~-~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSKL-EGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEeec-cccHHHHHHHHHhhCCCEEEECCCCC
Confidence 4899999999999999999998763 2232221 1121 1111100 01122333334566799999999743
No 416
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.91 E-value=0.0044 Score=59.44 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=33.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~ 309 (500)
-+.++|++|+|||++++.++...|.+++ ++.++.......+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~~~~~~~~~ 44 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYAREALAPGS 44 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHHHHHHhcCc
Confidence 4889999999999999999998888776 56666655544443
No 417
>PRK14530 adenylate kinase; Provisional
Probab=96.91 E-value=0.00097 Score=64.61 Aligned_cols=35 Identities=31% Similarity=0.562 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.||||+|||++++.+|+..+.+++. ..+++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr 39 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALR 39 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHH
Confidence 58999999999999999999999977664 344443
No 418
>PRK14529 adenylate kinase; Provisional
Probab=96.90 E-value=0.006 Score=59.95 Aligned_cols=35 Identities=17% Similarity=0.408 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.||||+|||++++.+|..++.+.+ +..++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhh
Confidence 4899999999999999999999987765 3344443
No 419
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.90 E-value=0.037 Score=56.65 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=31.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
+.|.-+++.|++|+|||++|..+|..++.+.+ ++...+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~~v-i~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIRSV-IGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCEE-EechHHH
Confidence 45778999999999999999999999998843 5554444
No 420
>PRK13808 adenylate kinase; Provisional
Probab=96.89 E-value=0.006 Score=63.30 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=28.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|+|+||||+|||++++.||...+++.+ +..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~i--s~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQL--STGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--cccHHHH
Confidence 3899999999999999999999987555 4455553
No 421
>PRK08233 hypothetical protein; Provisional
Probab=96.89 E-value=0.0041 Score=57.84 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC-CCEEEEec
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG-VPFFSISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~-~pfi~is~ 297 (500)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 3578899999999999999999885 44554443
No 422
>PRK06547 hypothetical protein; Provisional
Probab=96.88 E-value=0.001 Score=62.60 Aligned_cols=33 Identities=36% Similarity=0.486 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
.+.-|++.|++|+|||++|+.+++..+++++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 355788999999999999999999998887754
No 423
>PRK06696 uridine kinase; Validated
Probab=96.88 E-value=0.002 Score=62.94 Aligned_cols=39 Identities=33% Similarity=0.442 Sum_probs=33.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV 301 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~ 301 (500)
.|.-|.+.|++|+||||+|+.++..+ +.+++.++..+|.
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 35578999999999999999999988 7788888877775
No 424
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0032 Score=58.84 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~~ 302 (500)
.|.-++|.|+||+|||++|+++++.+. ...+.+++..+.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~ 48 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELRE 48 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHh
Confidence 455799999999999999999998875 3356666655544
No 425
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.88 E-value=0.00082 Score=61.88 Aligned_cols=32 Identities=34% Similarity=0.703 Sum_probs=26.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
++|+||+|+|||++|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986664 44444
No 426
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.88 E-value=0.0011 Score=62.24 Aligned_cols=34 Identities=26% Similarity=0.650 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
++.|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3479999999999999999999999999886653
No 427
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.87 E-value=0.0021 Score=73.02 Aligned_cols=69 Identities=28% Similarity=0.331 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCC
Q 010809 310 SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRP 389 (500)
Q Consensus 310 ~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrp 389 (500)
.+.|-++..|--..|.||++||.-+- -+.+.++.+.+.|.++.. +..+|..|.|+.. .+
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSa----------LD~~sE~~I~~~L~~~~~-----~~T~I~IaHRl~t-----i~- 672 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSA----------LDPETEAIILQNLLQILQ-----GRTVIIIAHRLST-----IR- 672 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccc----------cCHhHHHHHHHHHHHHhc-----CCeEEEEEccchH-----hh-
Confidence 45555666667788999999998443 355667777777776642 3456666777543 34
Q ss_pred CCcceEEEecC
Q 010809 390 GRFDRQVTVDV 400 (500)
Q Consensus 390 gRfdr~I~v~~ 400 (500)
++|+.+.++-
T Consensus 673 -~adrIiVl~~ 682 (709)
T COG2274 673 -SADRIIVLDQ 682 (709)
T ss_pred -hccEEEEccC
Confidence 6777666643
No 428
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.87 E-value=0.0071 Score=57.93 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.0
Q ss_pred eEEEEcCCCChHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA 285 (500)
-++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 429
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.87 E-value=0.011 Score=64.98 Aligned_cols=42 Identities=29% Similarity=0.238 Sum_probs=31.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEechhhHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGSEFVE 302 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e----~~~pfi~is~se~~~ 302 (500)
.+...-+|++|+||+|||+++..++.+ .+.++++++..+-.+
T Consensus 28 ~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~ 73 (509)
T PRK09302 28 LPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPE 73 (509)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHH
Confidence 344456899999999999999987543 267888888765433
No 430
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.85 E-value=0.034 Score=60.82 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 434 GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
-.+.+.|+.+++-|-.+|..+-...|+.+|-+.|++-+
T Consensus 605 PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 605 PITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred CCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 46788999999999999988989999999999888743
No 431
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.84 E-value=0.0096 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
-.++|+||+|+||++|.|++|.-
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 35899999999999999999983
No 432
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.83 E-value=0.015 Score=60.12 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
..|.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346678999999999999999998865 4555555554
No 433
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.83 E-value=0.0072 Score=63.53 Aligned_cols=55 Identities=27% Similarity=0.445 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 237 de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
+++++.+..+++.+.. ..|..+++.||.|||||++.+++...+ +.+++.+..+..
T Consensus 4 ~eQ~~~~~~v~~~~~~---------~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~ 61 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN---------EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGI 61 (364)
T ss_pred HHHHHHHHHHHHHHHc---------cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHH
Confidence 3455555555554432 235689999999999999999997765 334554444333
No 434
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.013 Score=54.60 Aligned_cols=101 Identities=23% Similarity=0.326 Sum_probs=57.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhh-------HH----------hhhh---------hhhhHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF-------VE----------MFVG---------VGASRVRDLFK 317 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~-------~~----------~~vG---------~~~~~vr~lf~ 317 (500)
.+.|.||+|+|||+|.+.+++.... =-+.+++.+. .. .+.+ .+..+.|-.+.
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~la 107 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLALA 107 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHHH
Confidence 5899999999999999999985410 0011111000 00 0000 11223344555
Q ss_pred HHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 318 KAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 318 ~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
.+....|.++++||..+- -+....+.+.+++.++.. . +..+|.+|..++
T Consensus 108 ral~~~p~illlDEPt~~----------LD~~~~~~l~~~l~~~~~---~-g~tiii~th~~~ 156 (173)
T cd03230 108 QALLHDPELLILDEPTSG----------LDPESRREFWELLRELKK---E-GKTILLSSHILE 156 (173)
T ss_pred HHHHcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---C-CCEEEEECCCHH
Confidence 666678999999998553 244455666666666531 2 345666666543
No 435
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.81 E-value=0.0092 Score=57.93 Aligned_cols=127 Identities=22% Similarity=0.328 Sum_probs=77.4
Q ss_pred hcChhhhhhhCCCCCce--EEEEcCCCChHHHHHHHHHHhc---CCCEEEEech----hhHHh-----------------
Q 010809 250 LKKPERFTAIGARIPKG--VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS----EFVEM----------------- 303 (500)
Q Consensus 250 l~~p~~~~~~G~~~p~g--vLL~GppGTGKT~LAralA~e~---~~pfi~is~s----e~~~~----------------- 303 (500)
..+.+.-.++|.-.|.| +++-|+.|||||.|.+.++--+ +....+++.. +|..+
T Consensus 12 ~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l 91 (235)
T COG2874 12 SGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRL 91 (235)
T ss_pred CCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhccee
Confidence 34556667787777765 7888999999999999986532 4555555432 22110
Q ss_pred -h-----------hhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeE
Q 010809 304 -F-----------VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGII 371 (500)
Q Consensus 304 -~-----------vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~vi 371 (500)
+ .....+.+..+.+..+.....+|+||-+..+.... .++.+++++..+..+....++|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l~d~gKvI 161 (235)
T COG2874 92 LFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKLSDLGKVI 161 (235)
T ss_pred EEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHHHhCCCEE
Confidence 0 01112334445555555566799999999985431 2345566666666555555554
Q ss_pred EEEeeCCCCCCchhhcC
Q 010809 372 VIAATNRADILDSALLR 388 (500)
Q Consensus 372 VIaaTN~~~~Ld~aLlr 388 (500)
++ | -.|+.++++.+.
T Consensus 162 il-T-vhp~~l~e~~~~ 176 (235)
T COG2874 162 IL-T-VHPSALDEDVLT 176 (235)
T ss_pred EE-E-eChhhcCHHHHH
Confidence 44 3 356777877765
No 436
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.81 E-value=0.0025 Score=58.02 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=29.3
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 269 LVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 269 L~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
|.||||+|||++|+.+|.+.+. ..++..++....+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 6899999999999999999874 5677778776554
No 437
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.80 E-value=0.0035 Score=65.18 Aligned_cols=81 Identities=22% Similarity=0.416 Sum_probs=52.0
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhhhhhhCCCC-CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhhHHhhhh
Q 010809 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI-PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 230 f~-dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~-p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se~~~~~vG 306 (500)
|+ ++.|+++..+++.+.+..... |... -+-++|.||+|+|||++++.+.+-+ ..+++.+..+-..+....
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~-------g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~ 131 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQ-------GLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLH 131 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHh-------ccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhh
Confidence 55 899999998876665543221 2222 2358999999999999999997755 336666655554444444
Q ss_pred hhhhHHHHHHH
Q 010809 307 VGASRVRDLFK 317 (500)
Q Consensus 307 ~~~~~vr~lf~ 317 (500)
.-+..+|+.|.
T Consensus 132 L~P~~~r~~~~ 142 (358)
T PF08298_consen 132 LFPKELRREFE 142 (358)
T ss_pred hCCHhHHHHHH
Confidence 44444444443
No 438
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.80 E-value=0.0093 Score=55.46 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=27.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
+++.||||+|||++++.+|..+ +..+..+++..+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 6899999999999999998764 667777777633
No 439
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.79 E-value=0.0038 Score=60.54 Aligned_cols=23 Identities=57% Similarity=0.661 Sum_probs=18.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.+.||.|||||+||-+.|-+.
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
No 440
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.0036 Score=62.41 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
..|-++..|....|.++++||--. +-+...+..+.+||.++.. .+..|+..|....
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~----------gvD~~~~~~i~~lL~~l~~----eg~tIl~vtHDL~ 200 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFT----------GVDVAGQKEIYDLLKELRQ----EGKTVLMVTHDLG 200 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcc----------cCCHHHHHHHHHHHHHHHH----CCCEEEEEeCCcH
Confidence 446677777778899999999632 2355667888888888763 2667777777654
No 441
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.78 E-value=0.005 Score=62.53 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----C-CCEEEEechhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----G-VPFFSISGSEF 300 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~----~-~pfi~is~se~ 300 (500)
.++.++|+||+|+||||++..+|..+ + ..+..+++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 35678999999999999999998754 3 56777776653
No 442
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0011 Score=61.44 Aligned_cols=28 Identities=36% Similarity=0.681 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
+-+.|||||||||+|+.+|+.+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999999985
No 443
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.77 E-value=0.012 Score=55.19 Aligned_cols=104 Identities=25% Similarity=0.405 Sum_probs=58.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhh--------HHh--h-------hhh------------hhhHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEF--------VEM--F-------VGV------------GASRVR 313 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~--------~~~--~-------vG~------------~~~~vr 313 (500)
.-+.|.||+|+|||+|.+.+++.... =-+.+++.+. ... | +|. +..+.|
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 35899999999999999999986421 1122222111 000 0 010 112233
Q ss_pred HHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 314 DLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 314 ~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
-.+..+....|.++++||--.= -+....+.+.+++.++.. ..+..+|.+|..++.
T Consensus 106 l~laral~~~p~llllDEP~~~----------LD~~~~~~~~~~l~~~~~---~~~~tiii~sh~~~~ 160 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSH----------LDIAHQIELLELLRRLAR---ERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccC----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHHH
Confidence 3444555677999999997542 244455666667766532 113456666766543
No 444
>PHA02774 E1; Provisional
Probab=96.77 E-value=0.008 Score=66.26 Aligned_cols=33 Identities=21% Similarity=0.438 Sum_probs=27.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEE-Eec
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS-ISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~-is~ 297 (500)
++++|+||||||||++|-++++.++..++. ++.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 379999999999999999999998655543 553
No 445
>PLN02199 shikimate kinase
Probab=96.77 E-value=0.008 Score=61.32 Aligned_cols=31 Identities=35% Similarity=0.576 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+|+|+|.+|+|||++++.+|+.++++|+..+
T Consensus 104 ~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 104 SMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 7999999999999999999999999997543
No 446
>PRK14528 adenylate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=62.35 Aligned_cols=34 Identities=29% Similarity=0.664 Sum_probs=28.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.+++.||||+|||++|+.+|...+.+.+. ..++.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 58999999999999999999999988764 44444
No 447
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.75 E-value=0.017 Score=55.27 Aligned_cols=42 Identities=29% Similarity=0.392 Sum_probs=31.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~ 309 (500)
.-+.|+|++|+|||++++.++. .|+++ +++.++.......+.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~--i~~D~~~~~~~~~~~ 44 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPV--IDADAIAHEVVEPGG 44 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEE--EEecHHHHHHhhccH
Confidence 3589999999999999999998 78765 455666655443333
No 448
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.75 E-value=0.01 Score=56.11 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=31.7
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGA 309 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~ 309 (500)
|.|+|.+|+|||++++.++...+.+++ ++.++.......+.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~~~~~ 42 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVVEKGS 42 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHHhcCC
Confidence 689999999999999999998666664 56666655544444
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.73 E-value=0.0015 Score=61.15 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=27.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
-+++.||||+|||++++.++.+++.+. ++..++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 488999999999999999999988655 4555544
No 450
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.72 E-value=0.0044 Score=64.22 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=33.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
.+.|.|+||+|||+|++.+++..+.+++.-.+.++.+..
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~ 202 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEK 202 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHh
Confidence 699999999999999999999999999877776666543
No 451
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.052 Score=54.01 Aligned_cols=188 Identities=17% Similarity=0.190 Sum_probs=103.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech---hhHHhhhh--hhh---hHHHHHHHHHHhCC---C-eEE
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS---EFVEMFVG--VGA---SRVRDLFKKAKENA---P-CIV 327 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s---e~~~~~vG--~~~---~~vr~lf~~a~~~~---p-~II 327 (500)
+.+.|.-+||=|+||+|||++|.-+|.++|.+-+. +.. ++....++ ..+ ...-+.++..+... | +.=
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~vi-sTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaG 163 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLGIRSVI-STDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAG 163 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcCCceee-cchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhh
Confidence 34557789999999999999999999999987652 222 22222222 001 11112222222211 1 011
Q ss_pred EEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHH
Q 010809 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRT 407 (500)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~ 407 (500)
|.|....+. -..+..+..-+++ ..++++=+.-=-|..+++..+.. -...+.+-.+|.+.-+
T Consensus 164 F~dqa~~V~-----------~GI~~VI~RAi~e------G~~lIIEGvHlVPg~i~~~~~~~--n~~~~~l~i~dee~Hr 224 (299)
T COG2074 164 FEDQASAVM-----------VGIEAVIERAIEE------GEDLIIEGVHLVPGLIKEEALGN--NVFMFMLYIADEELHR 224 (299)
T ss_pred HHHHhHHHH-----------HHHHHHHHHHHhc------CcceEEEeeeeccccccHhhhcc--ceEEEEEEeCCHHHHH
Confidence 333333331 1123334433332 12233333333477777777632 2335666778887765
Q ss_pred HHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 408 EILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 408 ~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
.-|-........+.. ....+.. -.+++.+-......|...|-..|+.+|+++++++++.-
T Consensus 225 ~RF~~R~~~t~~~rp--~~Ryl~y-----f~EiR~I~Dyl~~~Are~gVPvI~n~di~etv~~il~~ 284 (299)
T COG2074 225 ERFYDRIRYTHASRP--GGRYLEY-----FKEIRTIHDYLVERAREHGVPVIENDDIDETVDRILED 284 (299)
T ss_pred HHHHHHHHHHhccCc--hhHHHHH-----HHHHHHHHHHHHHHHHhcCCCeeccccHHHHHHHHHHH
Confidence 555444332211111 1222221 23677888888888888899999999999999998754
No 452
>PRK14527 adenylate kinase; Provisional
Probab=96.71 E-value=0.0014 Score=62.21 Aligned_cols=37 Identities=35% Similarity=0.584 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.|.-++++||||+|||++|+.+|.+.+.+.+. ..++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is--~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLS--TGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCC--ccHHH
Confidence 45679999999999999999999999876554 34444
No 453
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.70 E-value=0.021 Score=57.76 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=28.9
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
..|+-++|+||+|+|||+++..+|..+ +..+.-+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 446778899999999999999998755 5566666654
No 454
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.70 E-value=0.0038 Score=49.57 Aligned_cols=31 Identities=26% Similarity=0.504 Sum_probs=24.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc-CCCEEEEec
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA-GVPFFSISG 297 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~-~~pfi~is~ 297 (500)
+.+.|+||+|||+++++++..+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999985 344444443
No 455
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.017 Score=54.85 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+.|.||+|+|||+|++.+++.
T Consensus 35 ~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 35 LTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999974
No 456
>PRK14526 adenylate kinase; Provisional
Probab=96.67 E-value=0.0052 Score=59.82 Aligned_cols=35 Identities=29% Similarity=0.588 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.||||+|||++++.+|+..+.+++ +..++..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHHH
Confidence 3889999999999999999999886654 4455543
No 457
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=0.0091 Score=66.78 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~ 286 (500)
.++...+-|+||+|+|||++|..+-+
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~r 516 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLR 516 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34445799999999999999999966
No 458
>PRK02496 adk adenylate kinase; Provisional
Probab=96.67 E-value=0.0017 Score=61.14 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=25.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
-+++.||||+|||++|+.+|...+.+.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48999999999999999999999877654
No 459
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.67 E-value=0.0016 Score=62.80 Aligned_cols=34 Identities=41% Similarity=0.784 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|++.||||+|||++|+.+|...+++.+. ..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHHH
Confidence 7899999999999999999999876654 445543
No 460
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.67 E-value=0.0083 Score=56.51 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+.|.||+|+|||+|.+.+++..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.67 E-value=0.017 Score=63.34 Aligned_cols=107 Identities=24% Similarity=0.262 Sum_probs=62.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhh------hh----------------------h
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFV------GV----------------------G 308 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~v------G~----------------------~ 308 (500)
|......++++|+||+|||+++..++.+. +.++++++..+-.+.+. |. .
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 34444568899999999999999987643 77888887653322211 00 0
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 309 ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 309 ~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
...+..+.+......+.+++||-+..+.... ...+..+.+..|...+. ..++.++.+.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~------~~~~~~~~l~~l~~~~k----~~~~t~l~t~ 406 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALARGG------SLNEFRQFVIRLTDYLK----SEEITGLFTN 406 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHHhC------CHHHHHHHHHHHHHHHH----hCCCeEEEEe
Confidence 1112233333445678899999999885421 12233344445554443 3345555554
No 462
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.64 E-value=0.013 Score=62.98 Aligned_cols=37 Identities=30% Similarity=0.317 Sum_probs=28.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~ 300 (500)
++.++|.||+|+||||++..+|..+ +..+..+++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 4578999999999999998887643 356777777654
No 463
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.64 E-value=0.0084 Score=55.53 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.5
Q ss_pred CceEEEEcCCCChHHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA 285 (500)
|+..+++||.|+|||++.++++
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~ 42 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIG 42 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999999999984
No 464
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.009 Score=60.90 Aligned_cols=21 Identities=52% Similarity=0.843 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
-+-|.||+|+|||+|.|.||+
T Consensus 30 ~vaLlGpSGaGKsTlLRiIAG 50 (345)
T COG1118 30 LVALLGPSGAGKSTLLRIIAG 50 (345)
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 588999999999999999998
No 465
>PHA02624 large T antigen; Provisional
Probab=96.63 E-value=0.0036 Score=69.15 Aligned_cols=116 Identities=19% Similarity=0.221 Sum_probs=66.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccC-CCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG-TGI 343 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~-~~~ 343 (500)
+.++|+||||||||+++.++++.++...+.++++.-... |...-.....+.+||++-.-+-... -..
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~ 499 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNKDLPS 499 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccccCCc
Confidence 489999999999999999999999766777875432222 1111111123788888754332110 000
Q ss_pred CCCChHHHHHHHHHHHHhcCCCC------CC-C-----eEEEEeeCCCCCCchhhcCCCCcceEEEec
Q 010809 344 GGGNDEREQTLNQLLTEMDGFEG------NT-G-----IIVIAATNRADILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 344 ~~~~~e~~~~L~~LL~emd~~~~------~~-~-----viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~ 399 (500)
|.+-+ -+..|-+.+||..+ +. . -..|.|||. ..++..+.- ||.+++.+.
T Consensus 500 G~~~d----Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~ 560 (647)
T PHA02624 500 GQGMN----NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFAKVLDFK 560 (647)
T ss_pred ccccc----hhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHHHhcccc
Confidence 11111 12345555666400 00 0 235667775 456777777 998877774
No 466
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.62 E-value=0.078 Score=56.57 Aligned_cols=35 Identities=23% Similarity=0.439 Sum_probs=27.2
Q ss_pred eEEEEcCCCChHHHHH--HHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLA--KAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LA--ralA~e~~~pfi~is~se~~~ 302 (500)
=|+++||.|+||+.|+ +++.+.- .+++|+|..+.+
T Consensus 19 FIvV~GPrGSGK~elV~d~~L~~r~--~vL~IDC~~i~~ 55 (431)
T PF10443_consen 19 FIVVQGPRGSGKRELVMDHVLKDRK--NVLVIDCDQIVK 55 (431)
T ss_pred EEEEECCCCCCccHHHHHHHHhCCC--CEEEEEChHhhh
Confidence 3889999999999999 5555543 388888876654
No 467
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.62 E-value=0.016 Score=55.27 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..+.|.||+|+|||+|.+.+++..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999975
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.61 E-value=0.006 Score=58.43 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=32.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhhHHh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVEM 303 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se~~~~ 303 (500)
..|.-+++.|+||+|||+++..+..+. +..++.++..+|...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 457789999999999999999998887 778888998887654
No 469
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.61 E-value=0.0055 Score=65.25 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.+.|.|.|++|||||+|++++|...+.+++.--+.++..
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~ 257 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVF 257 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHH
Confidence 457999999999999999999999998876655555554
No 470
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.60 E-value=0.002 Score=62.46 Aligned_cols=34 Identities=41% Similarity=0.777 Sum_probs=28.2
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|+++||||+|||++|+.+|...+++.+. ..++..
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 8999999999999999999999876665 444443
No 471
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.58 E-value=0.011 Score=63.81 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCC
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPG 390 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpg 390 (500)
+.|-.+..|--..|.++++||-++= -+.+-++.|..-+..+. ..++++|..|.+|..| .
T Consensus 478 RQRIaLARAlYG~P~lvVLDEPNsN----------LD~~GE~AL~~Ai~~~k----~rG~~vvviaHRPs~L-----~-- 536 (580)
T COG4618 478 RQRIALARALYGDPFLVVLDEPNSN----------LDSEGEAALAAAILAAK----ARGGTVVVIAHRPSAL-----A-- 536 (580)
T ss_pred HHHHHHHHHHcCCCcEEEecCCCCC----------cchhHHHHHHHHHHHHH----HcCCEEEEEecCHHHH-----h--
Confidence 4444555555678999999998653 25566777777776664 4567778888886532 2
Q ss_pred CcceEEEecCCC---HHHHHHHHHHHhc
Q 010809 391 RFDRQVTVDVPD---IRGRTEILKVHGS 415 (500)
Q Consensus 391 Rfdr~I~v~~Pd---~~eR~~IL~~~l~ 415 (500)
..|+...+..=. .-.|.+++....+
T Consensus 537 ~~Dkilvl~~G~~~~FG~r~eVLa~~~~ 564 (580)
T COG4618 537 SVDKILVLQDGRIAAFGPREEVLAKVLR 564 (580)
T ss_pred hcceeeeecCChHHhcCCHHHHHHHhcC
Confidence 345444443221 2235566666655
No 472
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.0079 Score=56.45 Aligned_cols=102 Identities=26% Similarity=0.407 Sum_probs=57.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC--EEEEechhh----------HH----------hhh-----------hhhhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVP--FFSISGSEF----------VE----------MFV-----------GVGASRV 312 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~p--fi~is~se~----------~~----------~~v-----------G~~~~~v 312 (500)
-+.|.||.|+|||+|++++++..... -+.+++.+. .. .+. -.+..+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~lS~G~~q 107 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQ 107 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecCCHHHHH
Confidence 58899999999999999999854210 011111100 00 000 0011233
Q ss_pred HHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 313 RDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 313 r~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
|-.+..+....|.++++||-.+= -+......+.+++.++.. ..+..+|.+|..++
T Consensus 108 r~~la~al~~~p~llilDEP~~~----------LD~~~~~~l~~~l~~~~~---~~~~tiii~sH~~~ 162 (178)
T cd03229 108 RVALARALAMDPDVLLLDEPTSA----------LDPITRREVRALLKSLQA---QLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHCCCCEEEEeCCccc----------CCHHHHHHHHHHHHHHHH---hcCCEEEEEeCCHH
Confidence 44455566678999999997542 244555666677766542 21345556665544
No 473
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=96.58 E-value=0.0033 Score=65.61 Aligned_cols=68 Identities=26% Similarity=0.383 Sum_probs=45.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEec-hhhH-------Hhh------hhhhhhHHHHHHHHHHhCCCeEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISG-SEFV-------EMF------VGVGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~-se~~-------~~~------vG~~~~~vr~lf~~a~~~~p~IIf 328 (500)
+++++.|++|+|||++.++++++..- ..+.+.. .|+. ... .|.+.-...++++.+.+..|..|+
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~PD~Ii 258 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRPDRIV 258 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCCCeEE
Confidence 38999999999999999999886531 1222111 1111 000 122234567888888889999999
Q ss_pred EcCc
Q 010809 329 VDEI 332 (500)
Q Consensus 329 IDEI 332 (500)
+.|+
T Consensus 259 vGEi 262 (340)
T TIGR03819 259 VGEV 262 (340)
T ss_pred EeCc
Confidence 9998
No 474
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.58 E-value=0.026 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||+|++.+++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 475
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.58 E-value=0.02 Score=58.22 Aligned_cols=92 Identities=26% Similarity=0.465 Sum_probs=57.5
Q ss_pred Cce-EEEEcCCCChHHHHHHHHHHhcC----CCEEEEe-chhhH---------HhhhhhhhhHHHHHHHHHHhCCCeEEE
Q 010809 264 PKG-VLLVGPPGTGKTLLAKAIAGEAG----VPFFSIS-GSEFV---------EMFVGVGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 264 p~g-vLL~GppGTGKT~LAralA~e~~----~pfi~is-~se~~---------~~~vG~~~~~vr~lf~~a~~~~p~IIf 328 (500)
|+| ||++||.|+|||+...++-...+ .+.+.+. .-+|+ ..-+|..-......++.|.+..|+||+
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIl 203 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVIL 203 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEE
Confidence 335 67889999999999888877653 2333331 11222 122444444455666777778899999
Q ss_pred EcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
+-|+-.. +++..-|..- ..+-+|++|-
T Consensus 204 vGEmRD~----------------ETi~~ALtAA-----ETGHLV~~TL 230 (353)
T COG2805 204 VGEMRDL----------------ETIRLALTAA-----ETGHLVFGTL 230 (353)
T ss_pred EeccccH----------------HHHHHHHHHH-----hcCCEEEEec
Confidence 9998443 4555555543 3456777774
No 476
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.56 E-value=0.0017 Score=56.49 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhc
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~ 288 (500)
|+|.|+||||||++|+.++.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 477
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.002 Score=60.48 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=26.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
.++++|.||||||++++.++ +++.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 8998887643
No 478
>PRK10867 signal recognition particle protein; Provisional
Probab=96.54 E-value=0.03 Score=60.30 Aligned_cols=73 Identities=23% Similarity=0.333 Sum_probs=46.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhHH----hh------hh----------hhhhHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFVE----MF------VG----------VGASRVRDLFK 317 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~~----~~------vG----------~~~~~vr~lf~ 317 (500)
..|.-++++|++|+|||+++..+|..+ +..+..+++..+.. .+ .+ ......++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457789999999999999777776633 66777777763321 11 00 11122344555
Q ss_pred HHHhCCCeEEEEcCcch
Q 010809 318 KAKENAPCIVFVDEIDA 334 (500)
Q Consensus 318 ~a~~~~p~IIfIDEID~ 334 (500)
.++.....+|+||=.-.
T Consensus 178 ~a~~~~~DvVIIDTaGr 194 (433)
T PRK10867 178 EAKENGYDVVIVDTAGR 194 (433)
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 56666667899887644
No 479
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.022 Score=54.70 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..+.|.||.|+|||+|++.+++..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999853
No 480
>PF13245 AAA_19: Part of AAA domain
Probab=96.54 E-value=0.0036 Score=51.00 Aligned_cols=31 Identities=42% Similarity=0.629 Sum_probs=21.3
Q ss_pred EEEEcCCCChHH-HHHHHHHHhc------CCCEEEEec
Q 010809 267 VLLVGPPGTGKT-LLAKAIAGEA------GVPFFSISG 297 (500)
Q Consensus 267 vLL~GppGTGKT-~LAralA~e~------~~pfi~is~ 297 (500)
+++.|||||||| ++++.++... +..++.++.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 566999999999 5556665544 445666654
No 481
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.53 E-value=0.0057 Score=58.27 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|+-++|+||+|+|||+|++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35679999999999999999997754
No 482
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.53 E-value=0.0068 Score=65.48 Aligned_cols=96 Identities=21% Similarity=0.345 Sum_probs=61.5
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCce-EEEEcCCCChHHHHHHHHHHhcCCCEE-EEechhhHH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKG-VLLVGPPGTGKTLLAKAIAGEAGVPFF-SISGSEFVE 302 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~g-vLL~GppGTGKT~LAralA~e~~~pfi-~is~se~~~ 302 (500)
....+|+++.......+.+.+++. . |.| +|++||.|+|||+...++.++++-+.. .++..|=+|
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~---~-----------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE 297 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLN---R-----------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVE 297 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHh---C-----------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCee
Confidence 345678888777777766665543 2 335 677899999999999999888865444 333344333
Q ss_pred hhh-hh-----h---hhHHHHHHHHHHhCCCeEEEEcCcch
Q 010809 303 MFV-GV-----G---ASRVRDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 303 ~~v-G~-----~---~~~vr~lf~~a~~~~p~IIfIDEID~ 334 (500)
... |. . .-.....++...+..|+||.+.||-.
T Consensus 298 ~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 298 YQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 211 00 0 01223455566678899999999944
No 483
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.53 E-value=0.012 Score=58.75 Aligned_cols=44 Identities=41% Similarity=0.550 Sum_probs=34.2
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~ 303 (500)
|.+..+.+|++|+||||||+++..++.+ .|.|+++++.++-.+.
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~ 65 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEE 65 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHH
Confidence 3444557999999999999999988553 3889999988765443
No 484
>PRK01184 hypothetical protein; Provisional
Probab=96.52 E-value=0.0023 Score=60.14 Aligned_cols=34 Identities=35% Similarity=0.642 Sum_probs=27.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
-++|+||||+||||+++ ++.+.+++++.. ++.+.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~lr 36 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVIR 36 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHHH
Confidence 48899999999999998 788999888654 45443
No 485
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.52 E-value=0.011 Score=55.19 Aligned_cols=39 Identities=31% Similarity=0.468 Sum_probs=30.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
+.-++|.|+||+|||++|++++..+ +..+..+++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~ 45 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRT 45 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHH
Confidence 3468999999999999999999876 44566677765543
No 486
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.52 E-value=0.035 Score=54.59 Aligned_cols=68 Identities=24% Similarity=0.332 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCC
Q 010809 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGR 391 (500)
Q Consensus 312 vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgR 391 (500)
.|-.+..|.-+.|.+|+-||--.= -+.+..+.+..++.++.. ..+..+|..|..+ .+.. +
T Consensus 149 QRVAIARAL~~~P~iilADEPTgn----------LD~~t~~~V~~ll~~~~~---~~g~tii~VTHd~-----~lA~--~ 208 (226)
T COG1136 149 QRVAIARALINNPKIILADEPTGN----------LDSKTAKEVLELLRELNK---ERGKTIIMVTHDP-----ELAK--Y 208 (226)
T ss_pred HHHHHHHHHhcCCCeEEeeCcccc----------CChHHHHHHHHHHHHHHH---hcCCEEEEEcCCH-----HHHH--h
Confidence 344555566678999999996321 233444556666666532 3345666667653 4444 7
Q ss_pred cceEEEec
Q 010809 392 FDRQVTVD 399 (500)
Q Consensus 392 fdr~I~v~ 399 (500)
+||++.+.
T Consensus 209 ~dr~i~l~ 216 (226)
T COG1136 209 ADRVIELK 216 (226)
T ss_pred CCEEEEEe
Confidence 78877764
No 487
>PRK04182 cytidylate kinase; Provisional
Probab=96.51 E-value=0.0025 Score=59.06 Aligned_cols=29 Identities=38% Similarity=0.691 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
-|+|.|++|+|||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 37899999999999999999999998864
No 488
>PF13479 AAA_24: AAA domain
Probab=96.50 E-value=0.0043 Score=60.26 Aligned_cols=67 Identities=24% Similarity=0.380 Sum_probs=39.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh---HHhh------hhhhhhHHHHHHHHH--HhCCCeEEEEcCc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF---VEMF------VGVGASRVRDLFKKA--KENAPCIVFVDEI 332 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~---~~~~------vG~~~~~vr~lf~~a--~~~~p~IIfIDEI 332 (500)
+-.++|||+||+|||++|..+ +-|+ .+++..= ...+ .-..-..+.+.+..+ ......+|+||-+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 346999999999999999888 3333 2332211 0000 001223445555443 2334579999988
Q ss_pred chh
Q 010809 333 DAV 335 (500)
Q Consensus 333 D~l 335 (500)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 876
No 489
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=96.49 E-value=0.05 Score=58.77 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 395 QVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 395 ~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
.+.+-.+|.++-++-|....+....... .+...+ +-..|+.+=+.....|...+-..|+..++++++++++.-
T Consensus 386 ~flv~isdeeeH~~Rf~~Ra~~~~~~r~--~~ky~~-----~f~~IR~IQdyLv~~A~~~~ipvI~n~nid~tv~~~l~~ 458 (475)
T PRK12337 386 PMLVTLPDEALHRRRFELRDRETGASRP--RERYLR-----HFEEIRLIQDHLLRLARQEGVPVLPGEDLDESIDKALEV 458 (475)
T ss_pred EEEEEECCHHHHHHHHHHHhhhccCCCc--hhHHHH-----hHHHHHHHHHHHHHHHHHcCCCeecCccHHHHHHHHHHH
Confidence 3566668888777766666654432222 222222 233566555666667777788899999999999987644
No 490
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.49 E-value=0.0027 Score=58.60 Aligned_cols=35 Identities=37% Similarity=0.646 Sum_probs=24.8
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|.|+|+||||||+|+++++.. |.+++.-.+.++..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 789999999999999999998 88877544444443
No 491
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.49 E-value=0.0096 Score=55.28 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=33.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~ 303 (500)
|.-|+|+|.||+|||++|+++...+ +.+++.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 3468999999999999999998765 889999999887654
No 492
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.48 E-value=0.013 Score=56.00 Aligned_cols=30 Identities=53% Similarity=0.902 Sum_probs=23.6
Q ss_pred hCCCCCce--EEEEcCCCChHHHHHHHHHHhc
Q 010809 259 IGARIPKG--VLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 259 ~G~~~p~g--vLL~GppGTGKT~LAralA~e~ 288 (500)
....+++| ++|+||+|.|||++.|.+..+.
T Consensus 21 vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ceEeecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 33444444 8999999999999999998753
No 493
>PRK12338 hypothetical protein; Provisional
Probab=96.48 E-value=0.062 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|.-+++.|+||+|||++|+++|..++.+. +..++++.
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~--~~~tD~~r 40 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKH--LIETDFIR 40 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeE--EccChHHH
Confidence 356799999999999999999999998765 33445543
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.47 E-value=0.032 Score=59.87 Aligned_cols=72 Identities=21% Similarity=0.197 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------hh--------hh-hh----hhHHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF--------VG-VG----ASRVRDLFKK 318 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~-------~~--------vG-~~----~~~vr~lf~~ 318 (500)
..|.-++|+|++|+||||++..+|..+ |..+..+++..+.. .+ .+ .. ....++.++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 346679999999999999999998755 66777777654321 00 10 00 1223345556
Q ss_pred HHhCCCeEEEEcCcc
Q 010809 319 AKENAPCIVFVDEID 333 (500)
Q Consensus 319 a~~~~p~IIfIDEID 333 (500)
++.....+||||=.-
T Consensus 178 ~~~~~~DvViIDTaG 192 (429)
T TIGR01425 178 FKKENFDIIIVDTSG 192 (429)
T ss_pred HHhCCCCEEEEECCC
Confidence 655556788888653
No 495
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.46 E-value=0.012 Score=61.81 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=42.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC------CCEEEEechhhHHh---------------hhhhhhhHHHHHHHHHHhCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG------VPFFSISGSEFVEM---------------FVGVGASRVRDLFKKAKENAP 324 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~------~pfi~is~se~~~~---------------~vG~~~~~vr~lf~~a~~~~p 324 (500)
.++++||+|+|||+++++++++.. ..++.+ .+-++. -++.........++.+.+..|
T Consensus 136 lilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~--EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 136 IVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTY--EAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEe--CCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 589999999999999999988752 123222 111110 011111234555666777889
Q ss_pred eEEEEcCcc
Q 010809 325 CIVFVDEID 333 (500)
Q Consensus 325 ~IIfIDEID 333 (500)
.+|++.|+.
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999973
No 496
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.45 E-value=0.0096 Score=68.10 Aligned_cols=97 Identities=25% Similarity=0.346 Sum_probs=55.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---C--CCEEEEechhh----HHhhhhhhhhHHHHHHHHH---------H-hCCCeE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---G--VPFFSISGSEF----VEMFVGVGASRVRDLFKKA---------K-ENAPCI 326 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~--~pfi~is~se~----~~~~vG~~~~~vr~lf~~a---------~-~~~p~I 326 (500)
-++|.|+||||||++++++...+ + .+++-+..+.- .....|..+..+..++... . .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 58999999999999999995533 4 45554433221 1111232233333333221 0 123469
Q ss_pred EEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 327 VFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 327 IfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
|+|||+..+. ...+..|+..+ ....++++++-.+..
T Consensus 420 lIvDEaSMvd--------------~~~~~~Ll~~~---~~~~rlilvGD~~QL 455 (720)
T TIGR01448 420 LIVDESSMMD--------------TWLALSLLAAL---PDHARLLLVGDTDQL 455 (720)
T ss_pred EEEeccccCC--------------HHHHHHHHHhC---CCCCEEEEECccccc
Confidence 9999997772 23456666543 344567777766653
No 497
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.44 E-value=0.014 Score=56.89 Aligned_cols=22 Identities=45% Similarity=0.505 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||.|+|||+|.+.+++.
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999984
No 498
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.44 E-value=0.015 Score=57.93 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
...+.|.||+|+|||+|++.+++..
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3368999999999999999999853
No 499
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.43 E-value=0.003 Score=58.11 Aligned_cols=28 Identities=39% Similarity=0.742 Sum_probs=25.9
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
|.++|++|+|||++|+.+|+.++.|++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999988764
No 500
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.41 E-value=0.0049 Score=64.36 Aligned_cols=20 Identities=60% Similarity=0.956 Sum_probs=19.1
Q ss_pred EEEEcCCCChHHHHHHHHHH
Q 010809 267 VLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~ 286 (500)
+-|.||+||||||+.|.||+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999998
Done!