Query 010809
Match_columns 500
No_of_seqs 567 out of 3482
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 14:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010809.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010809hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 2E-55 6.7E-60 459.3 29.3 260 219-478 136-396 (405)
2 4b4t_I 26S protease regulatory 100.0 4.1E-54 1.4E-58 451.0 29.1 261 217-477 168-429 (437)
3 4b4t_H 26S protease regulatory 100.0 6.9E-54 2.4E-58 453.1 28.3 265 215-479 193-458 (467)
4 4b4t_L 26S protease subunit RP 100.0 1.1E-52 3.7E-57 444.2 29.8 256 219-474 169-425 (437)
5 4b4t_M 26S protease regulatory 100.0 3.8E-53 1.3E-57 447.3 26.1 258 218-475 168-426 (434)
6 4b4t_K 26S protease regulatory 100.0 8.9E-52 3E-56 436.4 30.5 255 219-473 160-416 (428)
7 2dhr_A FTSH; AAA+ protein, hex 100.0 1.3E-50 4.4E-55 435.8 26.0 292 208-500 9-301 (499)
8 2ce7_A Cell division protein F 100.0 3E-50 1E-54 430.7 28.2 281 220-500 4-286 (476)
9 3cf2_A TER ATPase, transitiona 100.0 2.1E-46 7.2E-51 421.0 10.8 251 224-474 470-746 (806)
10 3cf2_A TER ATPase, transitiona 100.0 1.2E-43 4.2E-48 398.6 22.1 249 224-475 197-463 (806)
11 1lv7_A FTSH; alpha/beta domain 100.0 1.3E-41 4.3E-46 334.3 28.6 256 221-476 2-257 (257)
12 3cf0_A Transitional endoplasmi 100.0 1.5E-39 5.2E-44 328.3 25.5 249 224-472 8-282 (301)
13 3h4m_A Proteasome-activating n 100.0 1.4E-38 4.7E-43 316.2 27.8 256 222-477 8-264 (285)
14 2x8a_A Nuclear valosin-contain 100.0 1.8E-39 6.1E-44 324.4 21.3 247 225-474 4-267 (274)
15 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.4E-39 1.5E-43 314.9 20.0 254 226-479 1-257 (262)
16 1iy2_A ATP-dependent metallopr 100.0 1.4E-37 4.8E-42 309.6 29.9 260 208-468 18-277 (278)
17 1ixz_A ATP-dependent metallopr 100.0 1.2E-37 4.3E-42 305.2 28.7 246 223-468 8-253 (254)
18 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.6E-37 8.8E-42 315.4 25.6 225 224-454 5-233 (322)
19 3eie_A Vacuolar protein sortin 100.0 1.1E-37 3.7E-42 317.4 21.6 229 221-455 8-239 (322)
20 2qp9_X Vacuolar protein sortin 100.0 3E-36 1E-40 311.4 24.8 226 223-454 43-271 (355)
21 3hu3_A Transitional endoplasmi 100.0 5.6E-36 1.9E-40 321.9 25.9 248 226-476 199-464 (489)
22 2r62_A Cell division protease 100.0 1.3E-38 4.5E-43 314.0 3.4 252 224-475 4-257 (268)
23 2zan_A Vacuolar protein sortin 100.0 7.6E-35 2.6E-39 309.6 23.1 227 222-454 125-355 (444)
24 3d8b_A Fidgetin-like protein 1 100.0 6.8E-33 2.3E-37 286.3 25.9 245 224-474 77-337 (357)
25 3b9p_A CG5977-PA, isoform A; A 100.0 2.4E-33 8.2E-38 280.3 19.5 244 222-471 12-272 (297)
26 3vfd_A Spastin; ATPase, microt 100.0 3.7E-32 1.3E-36 283.5 24.2 245 221-471 105-365 (389)
27 1ypw_A Transitional endoplasmi 100.0 1.6E-35 5.6E-40 335.6 -5.3 233 223-455 469-702 (806)
28 3t15_A Ribulose bisphosphate c 100.0 7.9E-33 2.7E-37 278.5 6.5 227 259-500 31-280 (293)
29 1ypw_A Transitional endoplasmi 100.0 4.4E-29 1.5E-33 283.0 26.6 246 224-472 197-460 (806)
30 2c9o_A RUVB-like 1; hexameric 99.9 3.2E-25 1.1E-29 236.1 12.0 170 225-402 31-225 (456)
31 3uk6_A RUVB-like 2; hexameric 99.9 6.4E-24 2.2E-28 217.8 17.0 222 225-472 38-331 (368)
32 3syl_A Protein CBBX; photosynt 99.9 6.4E-24 2.2E-28 212.7 15.4 226 230-468 29-283 (309)
33 3pfi_A Holliday junction ATP-d 99.9 1.3E-22 4.4E-27 206.1 23.7 221 219-471 17-254 (338)
34 1hqc_A RUVB; extended AAA-ATPa 99.9 1.3E-21 4.5E-26 196.9 21.6 218 224-471 5-238 (324)
35 1ofh_A ATP-dependent HSL prote 99.9 2.4E-21 8.4E-26 193.0 15.7 237 231-471 15-299 (310)
36 1d2n_A N-ethylmaleimide-sensit 99.8 9.4E-21 3.2E-25 187.2 15.4 226 229-470 31-263 (272)
37 3u61_B DNA polymerase accessor 99.8 1.5E-20 5E-25 190.0 16.8 210 218-470 13-236 (324)
38 2z4s_A Chromosomal replication 99.8 3.7E-20 1.3E-24 196.4 18.6 222 225-472 99-333 (440)
39 2chg_A Replication factor C sm 99.8 1.4E-19 4.7E-24 169.6 20.3 206 221-469 7-224 (226)
40 2v1u_A Cell division control p 99.8 6.6E-20 2.3E-24 187.4 19.1 225 227-472 15-277 (387)
41 3hws_A ATP-dependent CLP prote 99.8 5.5E-20 1.9E-24 189.5 17.9 233 232-467 16-345 (363)
42 3m6a_A ATP-dependent protease 99.8 8.1E-21 2.8E-25 206.6 11.4 225 227-471 77-341 (543)
43 3pvs_A Replication-associated 99.8 1.1E-19 3.7E-24 193.2 16.4 208 223-471 18-244 (447)
44 1sxj_A Activator 1 95 kDa subu 99.8 5.4E-20 1.9E-24 198.7 14.0 230 216-469 24-272 (516)
45 1g41_A Heat shock protein HSLU 99.8 6.2E-21 2.1E-25 201.9 6.3 169 231-411 15-189 (444)
46 1l8q_A Chromosomal replication 99.8 8.8E-19 3E-23 177.3 19.9 220 225-472 5-241 (324)
47 3bos_A Putative DNA replicatio 99.8 4.3E-19 1.5E-23 169.4 16.1 207 225-469 22-241 (242)
48 2qby_B CDC6 homolog 3, cell di 99.8 8.3E-19 2.8E-23 180.0 18.6 214 228-472 17-271 (384)
49 1njg_A DNA polymerase III subu 99.8 2.4E-18 8.2E-23 162.7 20.2 208 220-468 12-248 (250)
50 1g8p_A Magnesium-chelatase 38 99.8 4.4E-18 1.5E-22 172.7 22.8 223 225-475 18-326 (350)
51 1sxj_D Activator 1 41 kDa subu 99.8 1.3E-18 4.6E-23 176.5 17.6 215 217-469 23-261 (353)
52 2r44_A Uncharacterized protein 99.8 2.3E-18 8E-23 174.5 19.2 218 228-475 24-301 (331)
53 1in4_A RUVB, holliday junction 99.8 1E-17 3.5E-22 171.1 23.8 217 223-471 17-250 (334)
54 2qby_A CDC6 homolog 1, cell di 99.8 6.1E-18 2.1E-22 172.5 20.3 223 227-472 16-273 (386)
55 2chq_A Replication factor C sm 99.8 2.5E-18 8.5E-23 171.6 15.2 206 220-468 6-223 (319)
56 1um8_A ATP-dependent CLP prote 99.8 3.7E-18 1.3E-22 176.5 16.6 238 231-470 21-364 (376)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 4.2E-18 1.4E-22 191.6 18.3 223 226-473 181-435 (758)
58 1jbk_A CLPB protein; beta barr 99.8 1.5E-18 5E-23 158.9 11.6 160 226-410 17-194 (195)
59 1fnn_A CDC6P, cell division co 99.8 3.2E-17 1.1E-21 168.0 20.8 220 227-472 13-275 (389)
60 1iqp_A RFCS; clamp loader, ext 99.7 4.1E-17 1.4E-21 163.3 18.8 205 219-466 13-229 (327)
61 1sxj_B Activator 1 37 kDa subu 99.7 3.2E-17 1.1E-21 163.8 17.8 206 221-469 11-229 (323)
62 3te6_A Regulatory protein SIR3 99.7 3.8E-18 1.3E-22 173.6 10.9 215 233-473 22-317 (318)
63 1jr3_A DNA polymerase III subu 99.7 1E-16 3.4E-21 163.9 20.3 206 222-468 7-241 (373)
64 4fcw_A Chaperone protein CLPB; 99.7 2.8E-17 9.5E-22 164.3 15.8 206 231-452 17-279 (311)
65 3pxg_A Negative regulator of g 99.7 1.3E-17 4.6E-22 178.0 14.3 208 224-471 173-406 (468)
66 1qvr_A CLPB protein; coiled co 99.7 1.6E-16 5.5E-21 181.3 18.5 204 226-455 165-396 (854)
67 2bjv_A PSP operon transcriptio 99.7 1.3E-16 4.4E-21 156.7 15.0 206 228-464 3-250 (265)
68 3pxi_A Negative regulator of g 99.7 1E-16 3.6E-21 180.5 15.3 191 225-455 174-389 (758)
69 3pxi_A Negative regulator of g 99.7 3E-16 1E-20 176.7 18.6 200 231-451 491-724 (758)
70 2p65_A Hypothetical protein PF 99.7 6.1E-17 2.1E-21 148.1 10.5 153 226-402 17-187 (187)
71 1sxj_C Activator 1 40 kDa subu 99.7 3.3E-16 1.1E-20 159.7 16.3 211 219-468 13-236 (340)
72 1r6b_X CLPA protein; AAA+, N-t 99.7 3E-16 1E-20 176.5 17.3 201 231-450 458-714 (758)
73 1ojl_A Transcriptional regulat 99.7 7.7E-17 2.6E-21 162.8 9.5 205 231-467 2-248 (304)
74 1sxj_E Activator 1 40 kDa subu 99.7 5.4E-16 1.8E-20 157.9 15.1 197 220-451 3-244 (354)
75 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 1.4E-16 4.8E-21 171.4 11.2 210 231-472 22-286 (500)
76 3f9v_A Minichromosome maintena 99.6 1E-16 3.5E-21 176.0 4.0 223 231-472 295-588 (595)
77 1w5s_A Origin recognition comp 99.6 2.7E-14 9.1E-19 147.6 20.9 228 228-472 19-294 (412)
78 1qvr_A CLPB protein; coiled co 99.6 2.9E-15 1E-19 170.8 12.1 204 230-452 557-820 (854)
79 3co5_A Putative two-component 99.6 2.5E-15 8.5E-20 134.8 6.6 112 232-379 5-116 (143)
80 3n70_A Transport activator; si 99.5 1.8E-14 6E-19 129.4 9.5 113 231-379 1-116 (145)
81 1a5t_A Delta prime, HOLB; zinc 99.5 4.4E-13 1.5E-17 136.7 17.8 159 262-447 22-208 (334)
82 3k1j_A LON protease, ATP-depen 99.5 4.8E-13 1.6E-17 147.1 17.8 220 223-470 33-374 (604)
83 3cmw_A Protein RECA, recombina 99.5 6.1E-14 2.1E-18 167.7 10.1 152 226-378 1015-1217(1706)
84 3kw6_A 26S protease regulatory 99.4 4.3E-13 1.5E-17 108.4 9.3 76 399-474 1-76 (78)
85 2krk_A 26S protease regulatory 99.4 6E-13 2.1E-17 109.9 9.1 77 398-474 8-84 (86)
86 1ny5_A Transcriptional regulat 99.4 7.7E-13 2.6E-17 137.9 11.8 208 230-468 136-384 (387)
87 3vlf_B 26S protease regulatory 99.4 8.5E-13 2.9E-17 109.4 8.5 79 402-480 2-80 (88)
88 2gno_A DNA polymerase III, gam 99.4 7.7E-12 2.6E-16 126.4 16.1 142 235-414 1-152 (305)
89 3ec2_A DNA replication protein 99.3 1.2E-11 4.2E-16 114.0 11.8 134 225-379 4-143 (180)
90 4akg_A Glutathione S-transfera 99.3 3.9E-11 1.3E-15 149.2 18.1 137 265-416 1268-1433(2695)
91 3aji_B S6C, proteasome (prosom 99.2 2.9E-11 9.9E-16 98.6 7.5 74 402-475 2-75 (83)
92 2w58_A DNAI, primosome compone 99.2 6.9E-11 2.4E-15 110.7 9.9 102 227-335 21-127 (202)
93 3dzd_A Transcriptional regulat 99.2 4.5E-11 1.5E-15 123.7 8.4 192 231-451 129-361 (368)
94 2fna_A Conserved hypothetical 99.1 2.1E-09 7.3E-14 107.9 19.1 187 227-446 9-252 (357)
95 2dzn_B 26S protease regulatory 99.1 1.6E-11 5.3E-16 100.2 2.5 74 404-477 1-74 (82)
96 2qen_A Walker-type ATPase; unk 99.1 1E-08 3.6E-13 102.7 21.4 190 227-445 8-247 (350)
97 2vhj_A Ntpase P4, P4; non- hyd 99.0 4.3E-12 1.5E-16 128.8 -5.0 119 263-386 122-242 (331)
98 3f8t_A Predicted ATPase involv 99.0 1.4E-09 5E-14 115.1 13.5 217 233-476 215-488 (506)
99 2kjq_A DNAA-related protein; s 99.0 8.4E-10 2.9E-14 99.8 6.9 104 265-399 37-146 (149)
100 2qgz_A Helicase loader, putati 98.9 6.7E-10 2.3E-14 112.2 6.6 101 227-335 120-226 (308)
101 4akg_A Glutathione S-transfera 98.8 1.2E-07 4.2E-12 118.2 18.7 165 265-451 646-840 (2695)
102 2r2a_A Uncharacterized protein 98.7 5.8E-09 2E-13 99.0 5.0 128 264-404 5-156 (199)
103 3cmu_A Protein RECA, recombina 98.6 9.8E-08 3.4E-12 115.9 11.5 117 260-376 1423-1561(2050)
104 1svm_A Large T antigen; AAA+ f 98.6 4E-08 1.4E-12 102.0 5.5 120 259-400 164-284 (377)
105 3vkg_A Dynein heavy chain, cyt 98.5 9.6E-07 3.3E-11 111.1 17.4 136 265-414 1305-1469(3245)
106 1jr3_D DNA polymerase III, del 98.5 1.4E-06 4.9E-11 88.2 14.7 176 263-470 17-208 (343)
107 1tue_A Replication protein E1; 98.3 5.7E-07 1.9E-11 85.7 5.5 29 265-293 59-87 (212)
108 3vkg_A Dynein heavy chain, cyt 98.1 1.2E-05 3.9E-10 101.6 14.3 125 265-410 605-749 (3245)
109 1ye8_A Protein THEP1, hypothet 98.1 1E-05 3.5E-10 75.0 10.6 28 266-293 2-29 (178)
110 2cvh_A DNA repair and recombin 98.1 5.9E-06 2E-10 77.3 8.3 39 261-299 17-55 (220)
111 1u0j_A DNA replication protein 98.0 8.4E-06 2.9E-10 80.6 7.7 26 265-290 105-130 (267)
112 1z6t_A APAF-1, apoptotic prote 98.0 0.00011 3.7E-09 79.5 17.0 174 228-443 121-327 (591)
113 1n0w_A DNA repair protein RAD5 98.0 2.1E-05 7.1E-10 74.7 10.1 77 261-337 21-133 (243)
114 2ehv_A Hypothetical protein PH 98.0 4.3E-05 1.5E-09 72.8 11.8 127 262-399 28-206 (251)
115 3upu_A ATP-dependent DNA helic 98.0 2.3E-05 7.9E-10 82.9 10.5 132 218-378 11-166 (459)
116 2w0m_A SSO2452; RECA, SSPF, un 98.0 4.3E-05 1.5E-09 71.7 11.3 37 262-298 21-60 (235)
117 2z43_A DNA repair and recombin 97.9 1.8E-05 6.1E-10 80.0 8.7 115 261-376 104-255 (324)
118 1xp8_A RECA protein, recombina 97.9 2.7E-05 9.2E-10 80.4 9.8 116 261-376 71-208 (366)
119 2zr9_A Protein RECA, recombina 97.9 1.1E-05 3.9E-10 82.6 6.6 77 261-337 58-153 (349)
120 3sfz_A APAF-1, apoptotic pepti 97.9 0.00033 1.1E-08 81.5 19.4 169 228-435 121-320 (1249)
121 3hr8_A Protein RECA; alpha and 97.9 2.3E-05 7.9E-10 80.6 8.6 114 262-375 59-194 (356)
122 1qhx_A CPT, protein (chloramph 97.8 4.6E-05 1.6E-09 69.1 8.9 40 264-303 3-42 (178)
123 4a74_A DNA repair and recombin 97.8 5.6E-05 1.9E-09 71.0 9.5 39 261-299 22-69 (231)
124 1v5w_A DMC1, meiotic recombina 97.8 4.7E-05 1.6E-09 77.6 8.8 114 262-376 120-271 (343)
125 3cmu_A Protein RECA, recombina 97.8 3.9E-05 1.3E-09 93.5 9.4 118 260-377 728-867 (2050)
126 1u94_A RECA protein, recombina 97.7 3.5E-05 1.2E-09 79.2 7.1 77 261-337 60-155 (356)
127 2orw_A Thymidine kinase; TMTK, 97.7 2.2E-05 7.4E-10 73.1 4.7 68 266-335 5-88 (184)
128 3lda_A DNA repair protein RAD5 97.7 5.5E-05 1.9E-09 79.0 7.9 118 260-378 174-327 (400)
129 2dr3_A UPF0273 protein PH0284; 97.7 0.00022 7.5E-09 67.6 11.2 38 261-298 20-60 (247)
130 2i1q_A DNA repair and recombin 97.7 7.2E-05 2.5E-09 75.1 7.6 114 261-375 95-255 (322)
131 1pzn_A RAD51, DNA repair and r 97.6 0.00012 4.2E-09 74.8 9.2 39 261-299 128-175 (349)
132 2b8t_A Thymidine kinase; deoxy 97.6 0.00015 5.1E-09 69.8 9.2 70 266-335 14-101 (223)
133 2a5y_B CED-4; apoptosis; HET: 97.6 0.0013 4.6E-08 70.9 17.4 170 234-441 131-334 (549)
134 2r8r_A Sensor protein; KDPD, P 97.6 0.0011 3.7E-08 63.9 14.7 122 266-406 8-170 (228)
135 1g41_A Heat shock protein HSLU 97.6 0.00053 1.8E-08 72.4 13.6 152 311-469 240-431 (444)
136 2zts_A Putative uncharacterize 97.6 0.00039 1.3E-08 65.9 11.0 38 261-298 27-68 (251)
137 3cmw_A Protein RECA, recombina 97.6 5.8E-05 2E-09 91.0 6.2 78 260-337 728-824 (1706)
138 1gvn_B Zeta; postsegregational 97.5 0.00027 9.1E-09 70.3 9.2 60 237-300 10-69 (287)
139 2p5t_B PEZT; postsegregational 97.5 0.00032 1.1E-08 68.0 9.1 40 261-300 29-68 (253)
140 3trf_A Shikimate kinase, SK; a 97.5 6.4E-05 2.2E-09 68.6 3.9 38 264-303 5-42 (185)
141 3io5_A Recombination and repai 97.5 0.00019 6.5E-09 72.6 7.5 72 266-337 30-125 (333)
142 1nlf_A Regulatory protein REPA 97.4 0.00023 7.8E-09 69.9 7.8 36 264-299 30-78 (279)
143 2rhm_A Putative kinase; P-loop 97.4 0.00013 4.4E-09 66.7 4.8 34 261-294 2-35 (193)
144 3vaa_A Shikimate kinase, SK; s 97.3 0.00012 4E-09 68.2 4.0 38 264-303 25-62 (199)
145 2iut_A DNA translocase FTSK; n 97.3 0.0025 8.4E-08 69.2 14.4 74 325-411 345-420 (574)
146 2r6a_A DNAB helicase, replicat 97.3 0.00041 1.4E-08 73.2 8.1 39 260-298 199-241 (454)
147 1zp6_A Hypothetical protein AT 97.3 0.0002 6.8E-09 65.5 4.9 40 262-301 7-46 (191)
148 2fz4_A DNA repair protein RAD2 97.3 0.0012 4.1E-08 63.4 10.4 37 266-302 110-147 (237)
149 2iyv_A Shikimate kinase, SK; t 97.2 0.00016 5.5E-09 66.0 3.6 36 266-303 4-39 (184)
150 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00065 2.2E-08 66.2 8.0 40 264-303 4-46 (260)
151 2q6t_A DNAB replication FORK h 97.2 0.00062 2.1E-08 71.6 8.4 39 260-298 196-238 (444)
152 1cr0_A DNA primase/helicase; R 97.2 0.00046 1.6E-08 68.1 6.9 37 261-297 32-72 (296)
153 3kb2_A SPBC2 prophage-derived 97.2 0.00022 7.6E-09 63.7 4.1 31 266-296 3-33 (173)
154 1kag_A SKI, shikimate kinase I 97.2 0.00027 9.2E-09 63.6 4.4 37 264-302 4-40 (173)
155 3iij_A Coilin-interacting nucl 97.2 0.00023 7.7E-09 64.8 3.8 31 264-294 11-41 (180)
156 1y63_A LMAJ004144AAA protein; 97.1 0.00023 8E-09 65.4 3.7 31 264-294 10-41 (184)
157 2cdn_A Adenylate kinase; phosp 97.1 0.00029 1E-08 65.3 4.4 34 262-295 18-51 (201)
158 1via_A Shikimate kinase; struc 97.1 0.00027 9.2E-09 64.1 4.0 35 266-302 6-40 (175)
159 3jvv_A Twitching mobility prot 97.1 0.00041 1.4E-08 71.2 5.8 67 266-332 125-205 (356)
160 1ly1_A Polynucleotide kinase; 97.1 0.00051 1.8E-08 61.8 5.7 35 264-300 2-37 (181)
161 1zuh_A Shikimate kinase; alpha 97.1 0.00026 8.9E-09 63.7 3.6 36 266-303 9-44 (168)
162 1qf9_A UMP/CMP kinase, protein 97.1 0.00036 1.2E-08 63.4 4.5 39 262-302 4-42 (194)
163 2ius_A DNA translocase FTSK; n 97.1 0.0026 8.8E-08 68.4 11.5 75 324-411 297-374 (512)
164 1tev_A UMP-CMP kinase; ploop, 97.0 0.00041 1.4E-08 63.2 4.3 37 264-302 3-39 (196)
165 2pez_A Bifunctional 3'-phospho 97.0 0.00057 2E-08 62.1 5.2 38 263-300 4-44 (179)
166 3e1s_A Exodeoxyribonuclease V, 97.0 0.00092 3.1E-08 72.9 7.6 96 266-378 206-317 (574)
167 3bh0_A DNAB-like replicative h 97.0 0.0018 6E-08 65.0 9.1 39 260-298 64-105 (315)
168 3t61_A Gluconokinase; PSI-biol 97.0 0.00042 1.5E-08 64.3 4.2 31 264-294 18-48 (202)
169 2ze6_A Isopentenyl transferase 97.0 0.00042 1.4E-08 67.4 4.1 32 266-297 3-34 (253)
170 2c95_A Adenylate kinase 1; tra 97.0 0.00038 1.3E-08 63.7 3.5 38 264-303 9-46 (196)
171 1e6c_A Shikimate kinase; phosp 97.0 0.00052 1.8E-08 61.6 4.3 35 266-302 4-38 (173)
172 4gp7_A Metallophosphoesterase; 97.0 0.00053 1.8E-08 62.4 4.4 20 265-284 10-29 (171)
173 3lw7_A Adenylate kinase relate 97.0 0.00036 1.2E-08 62.0 3.1 34 266-302 3-36 (179)
174 1aky_A Adenylate kinase; ATP:A 96.9 0.00057 1.9E-08 64.4 4.5 37 264-302 4-40 (220)
175 2i3b_A HCR-ntpase, human cance 96.9 0.0017 5.9E-08 60.5 7.7 23 266-288 3-25 (189)
176 2vli_A Antibiotic resistance p 96.9 0.00042 1.4E-08 62.8 3.4 30 264-293 5-34 (183)
177 3umf_A Adenylate kinase; rossm 96.9 0.0015 5.2E-08 62.4 7.2 40 262-303 27-66 (217)
178 1zd8_A GTP:AMP phosphotransfer 96.9 0.00044 1.5E-08 65.5 3.4 38 263-302 6-43 (227)
179 3be4_A Adenylate kinase; malar 96.9 0.00056 1.9E-08 64.5 4.1 37 264-302 5-41 (217)
180 3cm0_A Adenylate kinase; ATP-b 96.9 0.00051 1.7E-08 62.5 3.6 35 265-301 5-39 (186)
181 2bwj_A Adenylate kinase 5; pho 96.9 0.00046 1.6E-08 63.3 3.3 37 264-302 12-48 (199)
182 3dl0_A Adenylate kinase; phosp 96.9 0.00054 1.8E-08 64.2 3.6 35 266-302 2-36 (216)
183 1ukz_A Uridylate kinase; trans 96.9 0.0006 2E-08 63.1 3.8 37 264-302 15-51 (203)
184 1tf7_A KAIC; homohexamer, hexa 96.8 0.0057 2E-07 65.6 12.0 107 262-378 279-416 (525)
185 3dm5_A SRP54, signal recogniti 96.8 0.0084 2.9E-07 63.2 12.9 194 263-471 99-340 (443)
186 2ewv_A Twitching motility prot 96.8 0.0031 1.1E-07 64.9 9.5 70 263-332 135-218 (372)
187 3tlx_A Adenylate kinase 2; str 96.8 0.00059 2E-08 65.8 3.7 39 263-303 28-66 (243)
188 3fb4_A Adenylate kinase; psych 96.8 0.00058 2E-08 63.9 3.5 35 266-302 2-36 (216)
189 1kht_A Adenylate kinase; phosp 96.8 0.00063 2.2E-08 61.8 3.7 25 265-289 4-28 (192)
190 2pt5_A Shikimate kinase, SK; a 96.8 0.00061 2.1E-08 60.9 3.5 35 266-302 2-36 (168)
191 1vma_A Cell division protein F 96.8 0.014 4.8E-07 58.5 13.8 73 261-333 101-196 (306)
192 2eyu_A Twitching motility prot 96.8 0.00065 2.2E-08 66.6 3.9 66 266-332 27-107 (261)
193 1w4r_A Thymidine kinase; type 96.8 0.0062 2.1E-07 57.2 10.4 69 265-335 21-103 (195)
194 1jjv_A Dephospho-COA kinase; P 96.8 0.0015 5.1E-08 60.6 6.1 35 265-302 3-37 (206)
195 1ak2_A Adenylate kinase isoenz 96.8 0.00088 3E-08 63.8 4.6 37 264-302 16-52 (233)
196 1g5t_A COB(I)alamin adenosyltr 96.8 0.0059 2E-07 57.4 10.1 115 266-398 30-177 (196)
197 4eun_A Thermoresistant glucoki 96.8 0.00097 3.3E-08 61.9 4.5 35 264-300 29-63 (200)
198 1knq_A Gluconate kinase; ALFA/ 96.8 0.00099 3.4E-08 60.1 4.4 34 265-300 9-42 (175)
199 3kl4_A SRP54, signal recogniti 96.7 0.013 4.3E-07 61.7 13.3 72 263-334 96-190 (433)
200 1zak_A Adenylate kinase; ATP:A 96.7 0.0007 2.4E-08 63.8 3.4 38 263-302 4-41 (222)
201 3uie_A Adenylyl-sulfate kinase 96.7 0.0014 4.6E-08 60.9 5.2 37 264-300 25-64 (200)
202 3crm_A TRNA delta(2)-isopenten 96.7 0.00093 3.2E-08 67.7 4.3 35 263-297 4-38 (323)
203 1vt4_I APAF-1 related killer D 96.7 0.0051 1.7E-07 71.2 10.5 43 234-287 131-173 (1221)
204 1nks_A Adenylate kinase; therm 96.7 0.001 3.5E-08 60.3 4.0 36 266-301 3-41 (194)
205 2pt7_A CAG-ALFA; ATPase, prote 96.7 0.0013 4.3E-08 66.8 5.0 69 266-334 173-251 (330)
206 2grj_A Dephospho-COA kinase; T 96.7 0.0022 7.4E-08 60.0 6.0 40 266-307 14-53 (192)
207 1cke_A CK, MSSA, protein (cyti 96.6 0.0015 5.1E-08 61.3 4.6 35 265-301 6-40 (227)
208 1ex7_A Guanylate kinase; subst 96.6 0.0022 7.6E-08 59.8 5.7 23 266-288 3-25 (186)
209 2pbr_A DTMP kinase, thymidylat 96.6 0.0017 5.6E-08 59.1 4.7 31 266-296 2-35 (195)
210 3b6e_A Interferon-induced heli 96.6 0.01 3.4E-07 54.6 10.1 22 266-287 50-71 (216)
211 1s96_A Guanylate kinase, GMP k 96.6 0.0046 1.6E-07 58.9 7.8 25 265-289 17-41 (219)
212 2v54_A DTMP kinase, thymidylat 96.6 0.0018 6.1E-08 59.6 4.8 33 264-296 4-37 (204)
213 1q57_A DNA primase/helicase; d 96.6 0.0049 1.7E-07 65.6 8.9 39 260-298 238-280 (503)
214 3sr0_A Adenylate kinase; phosp 96.5 0.0015 5E-08 61.9 4.0 35 266-302 2-36 (206)
215 3ake_A Cytidylate kinase; CMP 96.5 0.002 6.8E-08 59.4 4.8 34 266-301 4-37 (208)
216 1e4v_A Adenylate kinase; trans 96.5 0.0016 5.3E-08 61.1 4.1 35 266-302 2-36 (214)
217 2ga8_A Hypothetical 39.9 kDa p 96.5 0.00048 1.6E-08 70.7 0.6 29 266-294 26-54 (359)
218 1tf7_A KAIC; homohexamer, hexa 96.5 0.013 4.3E-07 62.9 11.6 109 264-381 39-187 (525)
219 1uj2_A Uridine-cytidine kinase 96.5 0.0023 7.9E-08 61.7 5.2 40 263-302 21-68 (252)
220 2bbw_A Adenylate kinase 4, AK4 96.5 0.0018 6.2E-08 62.1 4.4 30 264-293 27-56 (246)
221 2jaq_A Deoxyguanosine kinase; 96.5 0.0016 5.5E-08 59.7 3.7 29 266-294 2-30 (205)
222 2if2_A Dephospho-COA kinase; a 96.5 0.0035 1.2E-07 57.9 6.1 35 266-303 3-37 (204)
223 1uf9_A TT1252 protein; P-loop, 96.4 0.0024 8.1E-08 58.6 4.6 37 264-303 8-44 (203)
224 3bgw_A DNAB-like replicative h 96.4 0.0052 1.8E-07 64.8 7.6 39 260-298 193-234 (444)
225 2z0h_A DTMP kinase, thymidylat 96.4 0.0026 8.8E-08 58.1 4.6 30 267-296 3-35 (197)
226 2px0_A Flagellar biosynthesis 96.4 0.014 4.7E-07 58.2 10.3 36 263-298 104-143 (296)
227 2gxq_A Heat resistant RNA depe 96.4 0.017 6E-07 52.9 10.3 19 265-283 39-57 (207)
228 2xb4_A Adenylate kinase; ATP-b 96.4 0.002 7E-08 61.0 4.0 35 266-302 2-36 (223)
229 1xx6_A Thymidine kinase; NESG, 96.4 0.0098 3.3E-07 55.5 8.5 69 266-335 10-93 (191)
230 4a1f_A DNAB helicase, replicat 96.4 0.0098 3.4E-07 60.5 9.2 39 260-298 42-83 (338)
231 3gmt_A Adenylate kinase; ssgci 96.3 0.015 5.2E-07 56.0 10.0 36 266-303 10-45 (230)
232 2qor_A Guanylate kinase; phosp 96.3 0.0036 1.2E-07 58.2 5.4 28 262-289 10-37 (204)
233 3gfo_A Cobalt import ATP-bindi 96.3 0.013 4.4E-07 57.9 9.3 23 266-288 36-58 (275)
234 2wwf_A Thymidilate kinase, put 96.3 0.0012 4.2E-08 61.1 1.7 29 263-291 9-37 (212)
235 3r20_A Cytidylate kinase; stru 96.3 0.0029 9.8E-08 61.1 4.4 35 264-300 9-43 (233)
236 2plr_A DTMP kinase, probable t 96.3 0.0038 1.3E-07 57.5 5.0 31 264-294 4-36 (213)
237 1w36_D RECD, exodeoxyribonucle 96.2 0.01 3.5E-07 64.9 9.2 22 266-287 166-187 (608)
238 2yvu_A Probable adenylyl-sulfa 96.2 0.0048 1.6E-07 56.3 5.5 38 263-300 12-52 (186)
239 3a8t_A Adenylate isopentenyltr 96.2 0.0023 7.8E-08 65.2 3.6 34 264-297 40-73 (339)
240 3tau_A Guanylate kinase, GMP k 96.2 0.0039 1.3E-07 58.3 5.0 26 264-289 8-33 (208)
241 3nwj_A ATSK2; P loop, shikimat 96.2 0.0033 1.1E-07 61.2 4.3 29 266-294 50-78 (250)
242 1nn5_A Similar to deoxythymidy 96.2 0.0015 5.2E-08 60.5 1.8 26 264-289 9-34 (215)
243 1m7g_A Adenylylsulfate kinase; 96.1 0.004 1.4E-07 58.2 4.6 38 264-301 25-66 (211)
244 3c8u_A Fructokinase; YP_612366 96.1 0.0088 3E-07 55.7 6.8 26 264-289 22-47 (208)
245 1ltq_A Polynucleotide kinase; 96.1 0.003 1E-07 62.1 3.8 37 264-302 2-39 (301)
246 1t6n_A Probable ATP-dependent 96.1 0.085 2.9E-06 48.9 13.5 58 228-287 14-74 (220)
247 3foz_A TRNA delta(2)-isopenten 96.1 0.0035 1.2E-07 63.2 4.0 35 263-297 9-43 (316)
248 2f6r_A COA synthase, bifunctio 96.0 0.0066 2.2E-07 59.8 5.9 37 264-303 75-111 (281)
249 1vht_A Dephospho-COA kinase; s 96.0 0.0048 1.6E-07 57.7 4.5 36 264-302 4-39 (218)
250 2h92_A Cytidylate kinase; ross 96.0 0.0046 1.6E-07 57.8 4.4 36 264-301 3-38 (219)
251 1kgd_A CASK, peripheral plasma 96.0 0.0042 1.5E-07 56.7 4.0 25 264-288 5-29 (180)
252 2qt1_A Nicotinamide riboside k 96.0 0.0032 1.1E-07 58.4 3.2 34 265-300 22-56 (207)
253 1q3t_A Cytidylate kinase; nucl 96.0 0.0052 1.8E-07 58.5 4.7 38 262-301 14-51 (236)
254 3ney_A 55 kDa erythrocyte memb 96.0 0.01 3.4E-07 55.9 6.4 25 264-288 19-43 (197)
255 2axn_A 6-phosphofructo-2-kinas 95.9 0.018 6E-07 62.0 9.0 40 264-303 35-77 (520)
256 1hv8_A Putative ATP-dependent 95.9 0.05 1.7E-06 53.8 11.8 68 228-297 6-82 (367)
257 1vpl_A ABC transporter, ATP-bi 95.9 0.022 7.7E-07 55.4 9.0 23 266-288 43-65 (256)
258 3llm_A ATP-dependent RNA helic 95.9 0.036 1.2E-06 52.5 10.2 21 265-285 77-97 (235)
259 2oap_1 GSPE-2, type II secreti 95.9 0.0039 1.3E-07 66.9 3.8 68 266-333 262-343 (511)
260 3zvl_A Bifunctional polynucleo 95.9 0.0071 2.4E-07 63.1 5.6 36 263-300 257-292 (416)
261 4e22_A Cytidylate kinase; P-lo 95.9 0.0061 2.1E-07 58.9 4.7 28 266-293 29-56 (252)
262 4g1u_C Hemin import ATP-bindin 95.8 0.025 8.6E-07 55.4 8.8 23 266-288 39-61 (266)
263 2bdt_A BH3686; alpha-beta prot 95.8 0.0078 2.7E-07 54.9 4.8 35 266-301 4-38 (189)
264 2nq2_C Hypothetical ABC transp 95.8 0.033 1.1E-06 54.1 9.4 23 266-288 33-55 (253)
265 2j41_A Guanylate kinase; GMP, 95.7 0.0061 2.1E-07 56.0 3.8 25 264-288 6-30 (207)
266 3d3q_A TRNA delta(2)-isopenten 95.7 0.0058 2E-07 62.3 3.9 32 265-296 8-39 (340)
267 2lna_A AFG3-like protein 2; st 95.7 0.024 8.3E-07 47.4 7.0 63 92-156 14-77 (99)
268 1rz3_A Hypothetical protein rb 95.7 0.018 6.3E-07 53.3 7.0 37 264-300 22-61 (201)
269 2pl3_A Probable ATP-dependent 95.7 0.042 1.4E-06 51.7 9.6 54 227-282 24-80 (236)
270 1v43_A Sugar-binding transport 95.7 0.039 1.3E-06 56.8 9.9 22 266-287 39-60 (372)
271 3rlf_A Maltose/maltodextrin im 95.7 0.015 5.2E-07 60.1 6.8 23 266-288 31-53 (381)
272 3thx_B DNA mismatch repair pro 95.6 0.033 1.1E-06 63.8 9.9 23 264-286 673-695 (918)
273 3exa_A TRNA delta(2)-isopenten 95.6 0.0068 2.3E-07 61.2 3.7 32 265-296 4-35 (322)
274 1vec_A ATP-dependent RNA helic 95.5 0.085 2.9E-06 48.2 10.9 18 265-282 41-58 (206)
275 2j9r_A Thymidine kinase; TK1, 95.5 0.027 9.3E-07 53.6 7.5 67 267-335 31-113 (214)
276 1p9r_A General secretion pathw 95.5 0.036 1.2E-06 58.0 9.0 93 227-332 143-245 (418)
277 3iuy_A Probable ATP-dependent 95.5 0.028 9.5E-07 52.7 7.5 58 224-283 15-76 (228)
278 3fdi_A Uncharacterized protein 95.5 0.0087 3E-07 56.1 3.9 29 266-294 8-36 (201)
279 1qde_A EIF4A, translation init 95.5 0.11 3.7E-06 48.2 11.4 53 227-281 13-68 (224)
280 1lvg_A Guanylate kinase, GMP k 95.4 0.011 3.9E-07 54.8 4.4 25 264-288 4-28 (198)
281 3asz_A Uridine kinase; cytidin 95.4 0.008 2.7E-07 55.7 3.3 26 264-289 6-31 (211)
282 1odf_A YGR205W, hypothetical 3 95.4 0.01 3.5E-07 58.9 4.3 28 262-289 29-56 (290)
283 3tr0_A Guanylate kinase, GMP k 95.4 0.0098 3.3E-07 54.6 3.8 24 265-288 8-31 (205)
284 2qmh_A HPR kinase/phosphorylas 95.4 0.0084 2.9E-07 56.7 3.3 31 264-295 34-64 (205)
285 3a00_A Guanylate kinase, GMP k 95.3 0.0097 3.3E-07 54.4 3.5 24 265-288 2-25 (186)
286 1x6v_B Bifunctional 3'-phospho 95.3 0.014 4.7E-07 64.2 5.3 38 263-300 51-91 (630)
287 4a82_A Cystic fibrosis transme 95.3 0.065 2.2E-06 58.2 10.5 24 265-288 368-391 (578)
288 2xau_A PRE-mRNA-splicing facto 95.2 0.06 2E-06 60.6 10.4 23 265-287 110-132 (773)
289 3bor_A Human initiation factor 95.2 0.04 1.4E-06 52.1 7.8 56 226-283 28-86 (237)
290 3tui_C Methionine import ATP-b 95.2 0.037 1.3E-06 56.9 7.9 22 266-287 56-77 (366)
291 3fe2_A Probable ATP-dependent 95.2 0.052 1.8E-06 51.5 8.4 19 265-283 67-85 (242)
292 2v3c_C SRP54, signal recogniti 95.2 0.024 8.2E-07 59.6 6.5 36 263-298 98-136 (432)
293 1zu4_A FTSY; GTPase, signal re 95.1 0.05 1.7E-06 54.7 8.5 38 261-298 102-142 (320)
294 2yhs_A FTSY, cell division pro 95.1 0.058 2E-06 57.6 9.3 27 262-288 291-317 (503)
295 2orv_A Thymidine kinase; TP4A 95.1 0.082 2.8E-06 50.9 9.3 90 266-378 21-125 (234)
296 3thx_A DNA mismatch repair pro 95.0 0.064 2.2E-06 61.5 10.0 22 265-286 663-684 (934)
297 3eph_A TRNA isopentenyltransfe 95.0 0.011 3.9E-07 61.5 3.4 31 265-295 3-33 (409)
298 2xxa_A Signal recognition part 95.0 0.072 2.5E-06 55.9 9.6 71 262-332 98-192 (433)
299 2j37_W Signal recognition part 95.0 0.044 1.5E-06 58.6 8.0 36 262-297 99-137 (504)
300 1s2m_A Putative ATP-dependent 94.9 0.093 3.2E-06 53.0 9.9 58 226-285 19-79 (400)
301 2oxc_A Probable ATP-dependent 94.9 0.075 2.6E-06 49.9 8.6 54 226-281 22-78 (230)
302 1c9k_A COBU, adenosylcobinamid 94.9 0.017 5.7E-07 53.6 3.8 32 267-299 2-33 (180)
303 3lnc_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 55.2 3.3 24 265-288 28-52 (231)
304 1ls1_A Signal recognition part 94.9 0.056 1.9E-06 53.6 7.8 73 263-335 97-192 (295)
305 2p6r_A Afuhel308 helicase; pro 94.8 0.054 1.9E-06 59.9 8.5 34 265-298 41-77 (702)
306 2zj8_A DNA helicase, putative 94.8 0.068 2.3E-06 59.2 9.3 34 264-297 39-76 (720)
307 3e70_C DPA, signal recognition 94.8 0.062 2.1E-06 54.3 8.2 27 262-288 127-153 (328)
308 1m8p_A Sulfate adenylyltransfe 94.8 0.051 1.7E-06 59.1 8.1 39 264-302 396-438 (573)
309 3qf4_A ABC transporter, ATP-bi 94.8 0.17 6E-06 54.9 12.3 24 265-288 370-393 (587)
310 1bif_A 6-phosphofructo-2-kinas 94.8 0.068 2.3E-06 56.4 8.8 38 264-301 39-79 (469)
311 2z0m_A 337AA long hypothetical 94.8 0.094 3.2E-06 51.2 9.3 34 265-298 32-65 (337)
312 3e2i_A Thymidine kinase; Zn-bi 94.8 0.039 1.3E-06 52.6 6.2 68 267-335 31-113 (219)
313 3b5x_A Lipid A export ATP-bind 94.8 0.049 1.7E-06 59.1 7.8 23 266-288 371-393 (582)
314 4b3f_X DNA-binding protein smu 94.8 0.13 4.5E-06 56.4 11.2 33 267-299 208-243 (646)
315 1wb9_A DNA mismatch repair pro 94.8 0.13 4.3E-06 58.2 11.3 23 265-287 608-630 (800)
316 3qf4_B Uncharacterized ABC tra 94.7 0.11 3.8E-06 56.5 10.5 24 265-288 382-405 (598)
317 3p32_A Probable GTPase RV1496/ 94.7 0.14 4.8E-06 51.9 10.6 33 265-297 80-115 (355)
318 1q0u_A Bstdead; DEAD protein, 94.7 0.087 3E-06 48.9 8.2 19 265-283 42-60 (219)
319 1z6g_A Guanylate kinase; struc 94.6 0.019 6.4E-07 54.2 3.6 24 265-288 24-47 (218)
320 4i1u_A Dephospho-COA kinase; s 94.6 0.045 1.5E-06 51.9 6.0 127 266-412 11-152 (210)
321 2va8_A SSO2462, SKI2-type heli 94.6 0.15 5.1E-06 56.4 11.1 35 263-297 45-83 (715)
322 2fwr_A DNA repair protein RAD2 94.6 0.081 2.8E-06 55.1 8.6 37 266-302 110-147 (472)
323 1a7j_A Phosphoribulokinase; tr 94.5 0.016 5.5E-07 57.4 3.0 37 265-301 6-45 (290)
324 3pey_A ATP-dependent RNA helic 94.5 0.15 5.2E-06 50.8 10.2 21 264-284 44-64 (395)
325 1znw_A Guanylate kinase, GMP k 94.5 0.022 7.6E-07 52.9 3.7 24 266-289 22-45 (207)
326 1htw_A HI0065; nucleotide-bind 94.5 0.028 9.5E-07 50.7 4.2 23 266-288 35-57 (158)
327 3b60_A Lipid A export ATP-bind 94.5 0.1 3.5E-06 56.5 9.5 24 265-288 370-393 (582)
328 3hdt_A Putative kinase; struct 94.5 0.021 7.2E-07 54.5 3.5 29 266-294 16-44 (223)
329 1xti_A Probable ATP-dependent 94.5 0.2 6.7E-06 50.2 10.9 67 229-297 9-84 (391)
330 2gza_A Type IV secretion syste 94.4 0.024 8.1E-07 58.0 4.0 70 265-334 176-263 (361)
331 1j8m_F SRP54, signal recogniti 94.4 0.054 1.8E-06 53.9 6.5 71 264-334 98-191 (297)
332 2j0s_A ATP-dependent RNA helic 94.4 0.21 7.3E-06 50.5 11.2 57 227-285 36-95 (410)
333 1wp9_A ATP-dependent RNA helic 94.4 0.16 5.5E-06 51.6 10.3 37 266-302 25-66 (494)
334 3eiq_A Eukaryotic initiation f 94.4 0.28 9.5E-06 49.5 11.9 55 228-284 40-97 (414)
335 3h1t_A Type I site-specific re 94.4 0.07 2.4E-06 57.5 7.8 44 234-287 178-221 (590)
336 2jeo_A Uridine-cytidine kinase 94.3 0.025 8.6E-07 54.1 3.8 26 266-291 27-52 (245)
337 3b9q_A Chloroplast SRP recepto 94.3 0.045 1.5E-06 54.6 5.7 28 261-288 97-124 (302)
338 4aby_A DNA repair protein RECN 94.3 0.2 6.8E-06 51.3 10.7 23 266-288 62-84 (415)
339 3tbk_A RIG-I helicase domain; 94.3 0.46 1.6E-05 49.7 13.9 33 266-298 21-61 (555)
340 1gtv_A TMK, thymidylate kinase 94.3 0.01 3.5E-07 54.9 0.8 24 266-289 2-25 (214)
341 3ber_A Probable ATP-dependent 94.2 0.14 4.9E-06 48.9 8.7 53 228-282 43-98 (249)
342 3cr8_A Sulfate adenylyltranfer 94.1 0.071 2.4E-06 57.7 7.1 39 264-302 369-411 (552)
343 2v9p_A Replication protein E1; 94.1 0.032 1.1E-06 55.9 4.1 31 262-292 124-154 (305)
344 3i5x_A ATP-dependent RNA helic 94.1 0.19 6.4E-06 53.6 10.4 18 264-281 111-128 (563)
345 3oiy_A Reverse gyrase helicase 94.1 0.038 1.3E-06 56.5 4.7 20 265-284 37-56 (414)
346 3tqc_A Pantothenate kinase; bi 94.1 0.1 3.5E-06 52.6 7.8 39 262-300 90-133 (321)
347 2ffh_A Protein (FFH); SRP54, s 94.1 0.19 6.4E-06 52.7 10.0 70 263-332 97-189 (425)
348 4a2p_A RIG-I, retinoic acid in 94.0 0.37 1.3E-05 50.6 12.3 33 266-298 24-64 (556)
349 4eaq_A DTMP kinase, thymidylat 94.0 0.035 1.2E-06 52.9 3.9 32 264-295 26-59 (229)
350 3sqw_A ATP-dependent RNA helic 94.0 0.14 4.8E-06 55.1 9.1 57 225-281 14-77 (579)
351 3lxw_A GTPase IMAP family memb 93.9 0.12 4.2E-06 49.5 7.7 23 265-287 22-44 (247)
352 3q72_A GTP-binding protein RAD 93.9 0.045 1.5E-06 47.7 4.2 21 266-286 4-24 (166)
353 1fuu_A Yeast initiation factor 93.9 0.22 7.6E-06 49.8 9.8 55 226-282 19-76 (394)
354 4f4c_A Multidrug resistance pr 93.8 0.058 2E-06 64.2 6.3 24 265-288 445-468 (1321)
355 2ged_A SR-beta, signal recogni 93.8 0.058 2E-06 48.5 4.9 25 264-288 48-72 (193)
356 3ozx_A RNAse L inhibitor; ATP 93.8 0.14 4.9E-06 55.1 8.7 23 266-288 296-318 (538)
357 3vkw_A Replicase large subunit 93.8 0.14 4.8E-06 53.9 8.3 23 265-287 162-184 (446)
358 1sky_E F1-ATPase, F1-ATP synth 93.7 0.059 2E-06 57.2 5.4 22 266-287 153-174 (473)
359 3t1o_A Gliding protein MGLA; G 93.7 0.17 5.8E-06 45.1 7.8 23 266-288 16-38 (198)
360 2og2_A Putative signal recogni 93.7 0.065 2.2E-06 54.9 5.5 28 261-288 154-181 (359)
361 1sq5_A Pantothenate kinase; P- 93.7 0.036 1.2E-06 55.2 3.5 26 264-289 80-105 (308)
362 1np6_A Molybdopterin-guanine d 93.6 0.044 1.5E-06 50.2 3.7 26 263-288 5-30 (174)
363 1gm5_A RECG; helicase, replica 93.6 0.37 1.3E-05 54.3 11.8 35 264-298 389-426 (780)
364 1p5z_B DCK, deoxycytidine kina 93.4 0.024 8.3E-07 54.7 1.7 30 264-293 24-54 (263)
365 2ocp_A DGK, deoxyguanosine kin 93.4 0.051 1.7E-06 51.6 3.9 29 264-292 2-31 (241)
366 3aez_A Pantothenate kinase; tr 93.3 0.049 1.7E-06 54.6 3.8 26 263-288 89-114 (312)
367 1ewq_A DNA mismatch repair pro 93.3 0.2 6.9E-06 56.3 9.1 23 265-287 577-599 (765)
368 2v6i_A RNA helicase; membrane, 93.3 0.2 6.9E-06 52.1 8.5 33 265-297 3-39 (431)
369 3dkp_A Probable ATP-dependent 93.2 0.62 2.1E-05 43.7 11.3 18 265-282 67-84 (245)
370 3j16_B RLI1P; ribosome recycli 93.2 0.23 7.9E-06 54.3 9.3 23 266-288 105-127 (608)
371 3dz8_A RAS-related protein RAB 93.2 0.17 5.7E-06 45.6 6.9 23 266-288 25-47 (191)
372 2gks_A Bifunctional SAT/APS ki 93.1 0.2 6.8E-06 54.1 8.5 39 264-302 372-413 (546)
373 4f4c_A Multidrug resistance pr 93.1 0.23 7.8E-06 59.2 9.6 23 266-288 1107-1129(1321)
374 3def_A T7I23.11 protein; chlor 93.1 0.26 8.8E-06 47.4 8.5 24 265-288 37-60 (262)
375 1g8f_A Sulfate adenylyltransfe 93.0 0.06 2E-06 57.7 4.1 27 264-290 395-421 (511)
376 3tqf_A HPR(Ser) kinase; transf 93.0 0.052 1.8E-06 50.2 3.1 24 264-287 16-39 (181)
377 1rj9_A FTSY, signal recognitio 92.9 0.066 2.2E-06 53.5 4.1 26 263-288 101-126 (304)
378 3ly5_A ATP-dependent RNA helic 92.9 0.17 5.9E-06 48.7 7.0 19 265-283 92-110 (262)
379 2f7s_A C25KG, RAS-related prot 92.8 0.51 1.7E-05 43.2 9.7 22 266-287 27-48 (217)
380 3b85_A Phosphate starvation-in 92.8 0.043 1.5E-06 51.7 2.4 22 266-287 24-45 (208)
381 2onk_A Molybdate/tungstate ABC 92.7 0.051 1.7E-06 52.3 2.9 24 265-288 25-48 (240)
382 1xjc_A MOBB protein homolog; s 92.7 0.069 2.4E-06 48.8 3.6 32 265-296 5-39 (169)
383 3tif_A Uncharacterized ABC tra 92.7 0.054 1.9E-06 51.9 3.0 23 266-288 33-55 (235)
384 3l9o_A ATP-dependent RNA helic 92.7 0.27 9.3E-06 57.5 9.4 33 266-298 201-236 (1108)
385 2pcj_A ABC transporter, lipopr 92.7 0.042 1.4E-06 52.2 2.1 23 266-288 32-54 (224)
386 2cbz_A Multidrug resistance-as 92.6 0.044 1.5E-06 52.6 2.2 24 265-288 32-55 (237)
387 3kta_A Chromosome segregation 92.6 0.074 2.5E-06 47.8 3.6 24 266-289 28-51 (182)
388 2qm8_A GTPase/ATPase; G protei 92.6 0.34 1.1E-05 48.9 8.8 23 266-288 57-79 (337)
389 1r8s_A ADP-ribosylation factor 92.5 0.55 1.9E-05 40.5 9.1 22 266-287 2-23 (164)
390 2wsm_A Hydrogenase expression/ 92.5 0.09 3.1E-06 48.6 4.1 24 265-288 31-54 (221)
391 3fht_A ATP-dependent RNA helic 92.4 0.53 1.8E-05 47.2 10.1 53 228-282 25-82 (412)
392 2f9l_A RAB11B, member RAS onco 92.4 0.072 2.5E-06 48.6 3.2 22 266-287 7-28 (199)
393 3lxx_A GTPase IMAP family memb 92.4 0.19 6.6E-06 47.3 6.4 22 266-287 31-52 (239)
394 4a2q_A RIG-I, retinoic acid in 92.3 1 3.5E-05 50.4 13.2 33 265-297 264-304 (797)
395 1x3s_A RAS-related protein RAB 92.3 0.45 1.5E-05 42.3 8.5 22 266-287 17-38 (195)
396 1oix_A RAS-related protein RAB 92.2 0.07 2.4E-06 48.5 3.0 23 266-288 31-53 (191)
397 2o8b_B DNA mismatch repair pro 92.2 0.5 1.7E-05 54.7 10.7 20 265-284 790-809 (1022)
398 1sgw_A Putative ABC transporte 92.2 0.057 1.9E-06 51.1 2.4 23 266-288 37-59 (214)
399 1b0u_A Histidine permease; ABC 92.2 0.068 2.3E-06 52.1 2.9 23 266-288 34-56 (262)
400 2fh5_B SR-beta, signal recogni 92.2 0.43 1.5E-05 43.5 8.4 22 266-287 9-30 (214)
401 2d2e_A SUFC protein; ABC-ATPas 92.2 0.068 2.3E-06 51.6 2.9 22 266-287 31-52 (250)
402 1wrb_A DJVLGB; RNA helicase, D 92.1 0.36 1.2E-05 45.7 8.0 17 266-282 62-78 (253)
403 1g6h_A High-affinity branched- 92.1 0.058 2E-06 52.3 2.4 23 266-288 35-57 (257)
404 1mv5_A LMRA, multidrug resista 92.1 0.068 2.3E-06 51.3 2.8 22 266-287 30-51 (243)
405 3fmo_B ATP-dependent RNA helic 92.1 0.3 1E-05 48.1 7.6 53 227-281 91-148 (300)
406 2db3_A ATP-dependent RNA helic 92.0 0.57 2E-05 48.4 10.0 54 226-281 54-110 (434)
407 1lw7_A Transcriptional regulat 92.0 0.081 2.8E-06 53.7 3.4 27 265-291 171-197 (365)
408 2ykg_A Probable ATP-dependent 92.0 0.95 3.3E-05 49.3 12.3 21 266-286 30-50 (696)
409 1ji0_A ABC transporter; ATP bi 92.0 0.062 2.1E-06 51.6 2.4 23 266-288 34-56 (240)
410 1z2a_A RAS-related protein RAB 92.0 0.085 2.9E-06 45.8 3.1 22 266-287 7-28 (168)
411 4edh_A DTMP kinase, thymidylat 91.9 0.15 5.3E-06 48.0 5.1 31 265-295 7-40 (213)
412 2zu0_C Probable ATP-dependent 91.9 0.09 3.1E-06 51.3 3.5 22 266-287 48-69 (267)
413 2ff7_A Alpha-hemolysin translo 91.9 0.064 2.2E-06 51.8 2.4 23 266-288 37-59 (247)
414 2ghi_A Transport protein; mult 91.9 0.078 2.7E-06 51.6 3.0 24 265-288 47-70 (260)
415 3sop_A Neuronal-specific septi 91.8 0.082 2.8E-06 51.8 3.1 23 266-288 4-26 (270)
416 2f1r_A Molybdopterin-guanine d 91.8 0.058 2E-06 49.3 1.9 23 266-288 4-26 (171)
417 2dyk_A GTP-binding protein; GT 91.8 0.094 3.2E-06 45.3 3.2 22 266-287 3-24 (161)
418 2xgj_A ATP-dependent RNA helic 91.8 0.56 1.9E-05 54.3 10.5 33 266-298 103-138 (1010)
419 2i4i_A ATP-dependent RNA helic 91.8 0.72 2.5E-05 46.5 10.3 54 226-281 13-69 (417)
420 2pze_A Cystic fibrosis transme 91.8 0.074 2.5E-06 50.7 2.7 23 266-288 36-58 (229)
421 3fvq_A Fe(3+) IONS import ATP- 91.8 0.071 2.4E-06 54.6 2.7 23 266-288 32-54 (359)
422 3fmp_B ATP-dependent RNA helic 91.8 0.52 1.8E-05 49.1 9.4 53 228-282 92-149 (479)
423 3fho_A ATP-dependent RNA helic 91.8 0.7 2.4E-05 48.9 10.5 19 265-283 159-177 (508)
424 3g5u_A MCG1178, multidrug resi 91.7 0.55 1.9E-05 55.7 10.6 22 266-287 1061-1082(1284)
425 1nrj_B SR-beta, signal recogni 91.7 0.11 3.9E-06 47.7 3.8 24 265-288 13-36 (218)
426 2olj_A Amino acid ABC transpor 91.7 0.082 2.8E-06 51.6 2.9 23 266-288 52-74 (263)
427 1zd9_A ADP-ribosylation factor 91.7 0.38 1.3E-05 43.1 7.3 22 266-287 24-45 (188)
428 1fzq_A ADP-ribosylation factor 91.7 0.35 1.2E-05 43.2 7.0 23 265-287 17-39 (181)
429 2ixe_A Antigen peptide transpo 91.7 0.084 2.9E-06 51.7 3.0 23 266-288 47-69 (271)
430 2p67_A LAO/AO transport system 91.7 0.35 1.2E-05 48.7 7.7 25 264-288 56-80 (341)
431 2qi9_C Vitamin B12 import ATP- 91.6 0.071 2.4E-06 51.6 2.4 23 266-288 28-50 (249)
432 3g5u_A MCG1178, multidrug resi 91.6 0.6 2.1E-05 55.4 10.7 24 265-288 417-440 (1284)
433 2bov_A RAla, RAS-related prote 91.6 0.39 1.3E-05 43.2 7.3 22 266-287 16-37 (206)
434 2ihy_A ABC transporter, ATP-bi 91.5 0.074 2.5E-06 52.4 2.4 23 266-288 49-71 (279)
435 1z47_A CYSA, putative ABC-tran 91.5 0.086 2.9E-06 53.9 2.9 23 266-288 43-65 (355)
436 2yz2_A Putative ABC transporte 91.5 0.091 3.1E-06 51.2 3.0 23 266-288 35-57 (266)
437 2eyq_A TRCF, transcription-rep 91.4 1.3 4.3E-05 52.1 13.0 54 236-298 605-661 (1151)
438 2wji_A Ferrous iron transport 91.4 0.092 3.2E-06 46.3 2.7 22 266-287 5-26 (165)
439 3v9p_A DTMP kinase, thymidylat 91.4 0.13 4.5E-06 49.1 4.0 30 266-295 27-63 (227)
440 4a2w_A RIG-I, retinoic acid in 91.4 1.4 4.9E-05 50.4 13.3 33 265-297 264-304 (936)
441 2it1_A 362AA long hypothetical 91.3 0.09 3.1E-06 53.9 2.9 23 266-288 31-53 (362)
442 2yyz_A Sugar ABC transporter, 91.3 0.091 3.1E-06 53.8 2.9 22 266-287 31-52 (359)
443 1kao_A RAP2A; GTP-binding prot 91.3 0.11 3.9E-06 44.7 3.2 22 266-287 5-26 (167)
444 2zej_A Dardarin, leucine-rich 91.3 0.079 2.7E-06 47.7 2.2 22 266-287 4-25 (184)
445 2ce2_X GTPase HRAS; signaling 91.3 0.11 3.7E-06 44.7 3.0 22 266-287 5-26 (166)
446 2hf9_A Probable hydrogenase ni 91.2 0.2 7E-06 46.3 5.0 24 265-288 39-62 (226)
447 3ice_A Transcription terminati 91.2 0.38 1.3E-05 49.9 7.3 30 266-295 176-210 (422)
448 1g29_1 MALK, maltose transport 91.2 0.096 3.3E-06 53.8 2.9 23 266-288 31-53 (372)
449 3lv8_A DTMP kinase, thymidylat 91.1 0.12 4.2E-06 49.7 3.5 28 264-291 27-57 (236)
450 1svi_A GTP-binding protein YSX 91.1 0.1 3.5E-06 46.9 2.7 23 265-287 24-46 (195)
451 3d31_A Sulfate/molybdate ABC t 91.1 0.081 2.8E-06 53.9 2.3 23 266-288 28-50 (348)
452 1u8z_A RAS-related protein RAL 91.1 0.13 4.3E-06 44.5 3.2 22 266-287 6-27 (168)
453 3rc3_A ATP-dependent RNA helic 91.1 0.53 1.8E-05 52.1 9.0 24 265-288 156-179 (677)
454 3tmk_A Thymidylate kinase; pho 91.1 0.21 7.2E-06 47.3 5.0 30 264-293 5-34 (216)
455 1ek0_A Protein (GTP-binding pr 91.1 0.13 4.3E-06 44.7 3.2 22 266-287 5-26 (170)
456 2pjz_A Hypothetical protein ST 91.0 0.088 3E-06 51.4 2.4 23 266-288 32-54 (263)
457 2nzj_A GTP-binding protein REM 91.0 0.11 3.6E-06 45.6 2.7 22 266-287 6-27 (175)
458 2gk6_A Regulator of nonsense t 91.0 0.1 3.6E-06 57.1 3.1 32 266-297 197-232 (624)
459 1z06_A RAS-related protein RAB 90.9 0.44 1.5E-05 42.6 6.9 22 266-287 22-43 (189)
460 1z0j_A RAB-22, RAS-related pro 90.9 0.13 4.5E-06 44.7 3.2 23 266-288 8-30 (170)
461 2oca_A DAR protein, ATP-depend 90.9 0.57 1.9E-05 49.1 8.7 33 266-298 130-166 (510)
462 2wjg_A FEOB, ferrous iron tran 90.8 0.12 4.1E-06 46.1 2.9 22 266-287 9-30 (188)
463 2lkc_A Translation initiation 90.8 0.16 5.4E-06 44.7 3.6 23 265-287 9-31 (178)
464 1z08_A RAS-related protein RAB 90.8 0.14 4.7E-06 44.6 3.2 22 266-287 8-29 (170)
465 2hup_A RAS-related protein RAB 90.8 0.6 2E-05 42.5 7.7 22 266-287 31-52 (201)
466 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.14 4.7E-06 45.0 3.2 22 266-287 9-30 (177)
467 1g16_A RAS-related protein SEC 90.7 0.13 4.5E-06 44.6 3.0 22 266-287 5-26 (170)
468 2erx_A GTP-binding protein DI- 90.7 0.13 4.3E-06 44.8 2.9 22 266-287 5-26 (172)
469 1upt_A ARL1, ADP-ribosylation 90.7 0.18 6.2E-06 43.9 3.9 23 265-287 8-30 (171)
470 1ky3_A GTP-binding protein YPT 90.6 0.14 4.9E-06 45.0 3.2 22 266-287 10-31 (182)
471 1r2q_A RAS-related protein RAB 90.6 0.15 5E-06 44.2 3.2 22 266-287 8-29 (170)
472 3kjh_A CO dehydrogenase/acetyl 90.6 4.5 0.00016 37.3 13.9 138 267-409 3-171 (254)
473 1c1y_A RAS-related protein RAP 90.6 0.15 5.1E-06 44.1 3.2 22 266-287 5-26 (167)
474 3q85_A GTP-binding protein REM 90.5 0.12 4.3E-06 44.9 2.7 21 266-286 4-24 (169)
475 3bc1_A RAS-related protein RAB 90.5 0.15 5.1E-06 45.3 3.2 22 266-287 13-34 (195)
476 2hxs_A RAB-26, RAS-related pro 90.5 0.15 5.1E-06 44.8 3.2 22 266-287 8-29 (178)
477 2vp4_A Deoxynucleoside kinase; 90.5 0.17 5.8E-06 47.8 3.7 29 265-294 21-49 (230)
478 1oxx_K GLCV, glucose, ABC tran 90.5 0.081 2.8E-06 54.0 1.6 22 266-287 33-54 (353)
479 1oyw_A RECQ helicase, ATP-depe 90.5 0.53 1.8E-05 50.2 8.0 31 265-295 41-71 (523)
480 2atv_A RERG, RAS-like estrogen 90.4 0.17 5.9E-06 45.7 3.6 23 265-287 29-51 (196)
481 3gd7_A Fusion complex of cysti 90.2 0.12 4.2E-06 53.4 2.7 22 266-287 49-70 (390)
482 4ddu_A Reverse gyrase; topoiso 90.2 0.4 1.4E-05 56.0 7.3 19 266-284 95-113 (1104)
483 1z0f_A RAB14, member RAS oncog 90.1 0.17 5.8E-06 44.3 3.2 22 266-287 17-38 (179)
484 2y8e_A RAB-protein 6, GH09086P 90.1 0.16 5.4E-06 44.5 3.0 22 266-287 16-37 (179)
485 3ld9_A DTMP kinase, thymidylat 90.1 0.19 6.5E-06 47.9 3.7 31 264-294 21-55 (223)
486 4ag6_A VIRB4 ATPase, type IV s 90.0 0.29 9.8E-06 50.0 5.3 32 265-296 36-70 (392)
487 1tq4_A IIGP1, interferon-induc 90.0 0.19 6.5E-06 52.4 4.0 21 266-286 71-91 (413)
488 4dsu_A GTPase KRAS, isoform 2B 90.0 0.17 6E-06 44.8 3.2 23 266-288 6-28 (189)
489 3con_A GTPase NRAS; structural 90.0 0.18 6E-06 45.2 3.2 22 266-287 23-44 (190)
490 2bbs_A Cystic fibrosis transme 89.9 0.14 4.8E-06 50.7 2.7 23 266-288 66-88 (290)
491 3clv_A RAB5 protein, putative; 89.9 0.21 7E-06 44.6 3.7 23 265-287 8-30 (208)
492 2a9k_A RAS-related protein RAL 89.9 0.18 6.1E-06 44.5 3.2 22 266-287 20-41 (187)
493 2gj8_A MNME, tRNA modification 89.9 0.16 5.6E-06 45.2 2.9 22 266-287 6-27 (172)
494 1c4o_A DNA nucleotide excision 89.9 1.8 6.2E-05 47.6 11.9 34 266-299 30-63 (664)
495 2fn4_A P23, RAS-related protei 89.9 0.17 5.7E-06 44.5 3.0 22 266-287 11-32 (181)
496 3ch4_B Pmkase, phosphomevalona 89.8 0.36 1.2E-05 45.4 5.3 41 261-301 8-49 (202)
497 2oil_A CATX-8, RAS-related pro 89.8 0.18 6.2E-06 45.2 3.2 22 266-287 27-48 (193)
498 1m7b_A RND3/RHOE small GTP-bin 89.8 0.17 5.8E-06 45.2 3.0 22 266-287 9-30 (184)
499 2efe_B Small GTP-binding prote 89.8 0.18 6.3E-06 44.4 3.2 22 266-287 14-35 (181)
500 2il1_A RAB12; G-protein, GDP, 89.7 0.4 1.4E-05 43.2 5.5 21 266-286 28-48 (192)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-55 Score=459.34 Aligned_cols=260 Identities=40% Similarity=0.712 Sum_probs=248.6
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.+.....|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 136 ~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 136 LMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp SCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 4445667899999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+++..+|+|++++.++++|..|+..+||||||||+|+++.+|..+.++++.+..+++++||.+||++....+|+||+|||
T Consensus 216 s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATN 295 (405)
T 4b4t_J 216 AELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATN 295 (405)
T ss_dssp GGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEES
T ss_pred HHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccC
Confidence 99999999999999999999999999999999999999999988777778888999999999999999999999999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (500)
+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|..|+||||+||+++|++|++.|.++++.
T Consensus 296 rpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~ 375 (405)
T 4b4t_J 296 RLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRI 375 (405)
T ss_dssp CSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred ChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcCcCCC
Q 010809 458 AISSKEIDDSIDRIVAGMEGT 478 (500)
Q Consensus 458 ~It~~d~~~Ai~~v~~g~~~~ 478 (500)
.|+++||+.|+++++....+.
T Consensus 376 ~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 376 HVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp BCCHHHHHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHhCccccc
Confidence 999999999999998654443
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-54 Score=451.01 Aligned_cols=261 Identities=37% Similarity=0.681 Sum_probs=249.6
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
...+..+..++++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.+|+.+
T Consensus 168 ~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 168 VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred ceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 334556788999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
+++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|..+..+++.+..+++++||.+||++....+++||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999887777778889999999999999999999999999
Q ss_pred eCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 376 TNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 376 TN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
||+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|++.+|..|+||||+||+++|++|++.|.+++
T Consensus 328 TNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 328 TNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp ESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCHHHHHHHHHHHHcCcCC
Q 010809 456 KAAISSKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 456 ~~~It~~d~~~Ai~~v~~g~~~ 477 (500)
+..|+++||++|++++..+..+
T Consensus 408 ~~~It~eDf~~Al~rv~~~~~~ 429 (437)
T 4b4t_I 408 RMQVTAEDFKQAKERVMKNKVE 429 (437)
T ss_dssp CSCBCHHHHHHHHHHHHHHHCC
T ss_pred CCccCHHHHHHHHHHHhCCCCh
Confidence 9999999999999999876544
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-54 Score=453.12 Aligned_cols=265 Identities=39% Similarity=0.702 Sum_probs=251.2
Q ss_pred cccccccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 215 QSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 215 ~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
.....+.++..|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++++|+
T Consensus 193 ~~v~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 193 PSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp CCCCCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CccceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 33334556778899999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred EEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
.++++++.++|+|.+++.++.+|..|+..+||||||||+|+++.+|+.+.++...+...+++++|.+||++....+|+||
T Consensus 273 ~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 273 RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp EEEGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred EEEhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999998776667778889999999999999999999999
Q ss_pred EeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 010809 374 AATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGR 453 (500)
Q Consensus 374 aaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r 453 (500)
+|||+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..+++++.+|..|+||||+||+++|++|++.|.+
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air 432 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 432 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCHHHHHHHHHHHHcCcCCCC
Q 010809 454 RGKAAISSKEIDDSIDRIVAGMEGTV 479 (500)
Q Consensus 454 ~~~~~It~~d~~~Ai~~v~~g~~~~~ 479 (500)
+++..|+++||.+|+++++.|.++.+
T Consensus 433 ~~~~~it~~Df~~Al~kV~~g~~k~s 458 (467)
T 4b4t_H 433 ARRKVATEKDFLKAVDKVISGYKKFS 458 (467)
T ss_dssp HTCSSBCHHHHHHHHHHHHHHHCC--
T ss_pred cCCCccCHHHHHHHHHHHhcCcccch
Confidence 99999999999999999999887653
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-52 Score=444.17 Aligned_cols=256 Identities=40% Similarity=0.680 Sum_probs=245.5
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.+.....|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 3445667899999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+++.++|+|.++..++.+|..|+..+||||||||+|+++.+|..+....+.+...++++||.+||++....+++||+|||
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATN 328 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATN 328 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEES
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999977666677788999999999999999999999999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA 457 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~ 457 (500)
+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..++|+..+|..|+||||+||+++|++|++.|.++++.
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~~~~ 408 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRD 408 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHcC
Q 010809 458 AISSKEIDDSIDRIVAG 474 (500)
Q Consensus 458 ~It~~d~~~Ai~~v~~g 474 (500)
.|+++||.+|++++...
T Consensus 409 ~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 409 HINPDDLMKAVRKVAEV 425 (437)
T ss_dssp SBCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999998754
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-53 Score=447.31 Aligned_cols=258 Identities=37% Similarity=0.686 Sum_probs=245.9
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
..+..+..|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 34455678899999999999999999998877 99999999999999999999999999999999999999999999999
Q ss_pred chhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 297 GSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 297 ~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
++++..+|+|.+++.++.+|..|+..+||||||||+|+++.+|..+..++..+..+++++||.+||++....+|+||+||
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaT 327 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAAT 327 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEEC
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999998776677788899999999999999999999999999
Q ss_pred CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 377 NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 377 N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
|+|+.||+|++||||||+.|+|++||.++|.+||+.|+++.++..+++++.+|..|+||||+||+++|++|++.|.++++
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~ 407 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQ 407 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHcCc
Q 010809 457 AAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 457 ~~It~~d~~~Ai~~v~~g~ 475 (500)
..|+++||.+|++++....
T Consensus 408 ~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 408 SSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp SSBCHHHHHHHHHSCSSSC
T ss_pred CCcCHHHHHHHHHHHhCCC
Confidence 9999999999999876543
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-52 Score=436.44 Aligned_cols=255 Identities=40% Similarity=0.672 Sum_probs=244.2
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.+.....|+++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|+++++||+.+++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~ 239 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNG 239 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEG
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3455677899999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
+++.++|+|.++..++++|..|+..+||||||||+|+++.+|..+..+++.+..+++++||.+||++....+++||+|||
T Consensus 240 ~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN 319 (428)
T 4b4t_K 240 SEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATN 319 (428)
T ss_dssp GGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEES
T ss_pred chhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999987777778888999999999999999999999999999
Q ss_pred CCCCCchhhcCCCCcceEEEec-CCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 378 RADILDSALLRPGRFDRQVTVD-VPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~-~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
+|+.||+|++||||||+.|++| +|+.++|.+||+.|+++.++.+++|++.+|..|+||||+||+++|++|++.|.++++
T Consensus 320 ~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~ 399 (428)
T 4b4t_K 320 RADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR 399 (428)
T ss_dssp CSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 9999999999999999999996 899999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCHHHHHHHHHHHHc
Q 010809 457 AAISSKEIDDSIDRIVA 473 (500)
Q Consensus 457 ~~It~~d~~~Ai~~v~~ 473 (500)
..|+++||++|+.+++.
T Consensus 400 ~~i~~~d~~~A~~~~~~ 416 (428)
T 4b4t_K 400 YVILQSDLEEAYATQVK 416 (428)
T ss_dssp SSBCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHhhC
Confidence 99999999999998753
No 7
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-50 Score=435.75 Aligned_cols=292 Identities=61% Similarity=1.021 Sum_probs=267.2
Q ss_pred CCCcccccccccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 010809 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e 287 (500)
++.|+||+|++++..+. ++++|+||+|++++++++++++.+++++..|..+|.+.|+|++|+||||||||+||+++|++
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 9 DSAFSFTKSRARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp ---------CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCcccCcceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999988777 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 288 ~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
++.+|++++++++.+++++.+..+++.+|+.++...||++||||||.++.+++.+.++++++..+++++++.+|+++..+
T Consensus 88 ~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~ 167 (499)
T 2dhr_A 88 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 167 (499)
T ss_dssp TTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSS
T ss_pred hCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999999999888899999999999998877655566888999999999999999888
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
..++++++||+|+.||++++|||||++++.+++||.++|.+||+.|+++.++.+++++..++..|+||+|+||+++|++|
T Consensus 168 ~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 168 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCC-CCChhhHHHHHhhhccccccC
Q 010809 448 AILAGRRGKAAISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~-~~~~~ek~~~a~hE~gha~~~ 500 (500)
+..|.++++..|+++||++|++++..+.+++. .+++++++.++|||+|||+|+
T Consensus 248 a~~A~~~~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~ 301 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAA 301 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHH
Confidence 99999988889999999999999999987765 568889999999999999874
No 8
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=3e-50 Score=430.68 Aligned_cols=281 Identities=63% Similarity=1.064 Sum_probs=252.6
Q ss_pred ccccC-CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 010809 220 FQMEP-NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (500)
Q Consensus 220 ~~~~~-~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s 298 (500)
++.+. .++++|+||+|++++|+++++++.++++|..|..+|.++|+|+||+||||||||++|+++|++++.||++++++
T Consensus 4 ~~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~ 83 (476)
T 2ce7_A 4 MYKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGS 83 (476)
T ss_dssp -CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred eeccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHH
Confidence 34444 66889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++.+.|+|.+..+++.+|..++..+||||||||+|.++.+++.+.++++++..+++++|+.+|+++..+.+++||++||+
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~ 163 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNR 163 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESC
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999998877777888999999999999999888889999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCC
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAA 458 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (500)
++.+|++++|||||++.+.+++||.++|.+|++.++++.++.+++++..++..|+||+|+||+++|++|++.|.+++...
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~ 243 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDK 243 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCe
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCcCCCC-CCChhhHHHHHhhhccccccC
Q 010809 459 ISSKEIDDSIDRIVAGMEGTV-MTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 459 It~~d~~~Ai~~v~~g~~~~~-~~~~~ek~~~a~hE~gha~~~ 500 (500)
|+.+||++|+++++.|.+++. .+++++++.++|||+|||+|+
T Consensus 244 I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~ 286 (476)
T 2ce7_A 244 ITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVS 286 (476)
T ss_dssp BCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHh
Confidence 999999999999999988775 568899999999999999874
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-46 Score=421.04 Aligned_cols=251 Identities=39% Similarity=0.730 Sum_probs=194.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..++++|+||+|++++|++|++.+.+ +++|+.|.++|.++|+|+|||||||||||++|+|+|++++.||+.++++++..
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 45789999999999999999999998 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
+|+|.+++.++.+|+.|+..+||||||||||+++.+|+.+.++++....+++++||.+||++....+|+||+|||+|+.|
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~l 629 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 629 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSS
T ss_pred cccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhC
Confidence 99999999999999999999999999999999999997655555667789999999999999999999999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC------
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK------ 456 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~------ 456 (500)
|++++||||||+.|++++||.++|.+||+.|+++.++..++|++.+|+.|+||||+||.++|++|++.|.++.-
T Consensus 630 D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~ 709 (806)
T 3cf2_A 630 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 709 (806)
T ss_dssp CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----
T ss_pred CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988621
Q ss_pred -------------------CCcCHHHHHHHHHHHHcC
Q 010809 457 -------------------AAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 457 -------------------~~It~~d~~~Ai~~v~~g 474 (500)
..|+++||++|+.++...
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pS 746 (806)
T 3cf2_A 710 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 746 (806)
T ss_dssp ------------------CCC----CCTTTC------
T ss_pred hhhhccCccccccccccccCccCHHHHHHHHHhCCCC
Confidence 258888888888876543
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.2e-43 Score=398.64 Aligned_cols=249 Identities=41% Similarity=0.686 Sum_probs=232.1
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..+.++|+||+|+++++++|++.+.+ +++|+.|..+|.++|+|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34689999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
+|+|.++..++.+|+.|+..+||||||||||+++.+|+.+ .++...+++++|+.+||++..+.+|+||++||+++.|
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~---~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT---HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC---CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC---CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhc
Confidence 9999999999999999999999999999999999988653 2345578999999999999988899999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-------
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 455 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~------- 455 (500)
|++++||||||+.|+++.||.++|.+||+.|+++.++..++++..+|..|+||+|+||.++|++|++.|.++.
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred ----------CCCcCHHHHHHHHHHHHcCc
Q 010809 456 ----------KAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 456 ----------~~~It~~d~~~Ai~~v~~g~ 475 (500)
...|+++||..|+..+....
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~ 463 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSA 463 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcc
Confidence 23478889999998765443
No 11
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=1.3e-41 Score=334.25 Aligned_cols=256 Identities=67% Similarity=1.089 Sum_probs=235.5
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
+.+..++.+|+||+|++++++++.+++.++.++..|..+|.+.|++++|+||||||||++|+++|++++.|++.++++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~ 81 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence 44566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
.+.+.+.+...++.+|+.+....|+++||||+|.++.+++.+.+++..+..+.+++++..++++..+.+++||++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD 161 (257)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTT
T ss_pred HHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCch
Confidence 99999998999999999999889999999999999988877666677788899999999999988888999999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (500)
.+|++++|++||++.+.++.|+.++|.+|++.++++.++.++.+...++..|+||+++||.++|++|+..|.+++...|+
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~ 241 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVS 241 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcC
Q 010809 461 SKEIDDSIDRIVAGME 476 (500)
Q Consensus 461 ~~d~~~Ai~~v~~g~~ 476 (500)
.+|+++|++++..|.+
T Consensus 242 ~~~~~~a~~~~~~~~~ 257 (257)
T 1lv7_A 242 MVEFEKAKDKIMMGLE 257 (257)
T ss_dssp HHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999987753
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.5e-39 Score=328.30 Aligned_cols=249 Identities=40% Similarity=0.736 Sum_probs=225.6
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..++++|+||+|++++++++.+.+.+ +.+|+.|..+|...++++||+||||||||++|+++|++++.+|+.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 45678999999999999999999987 89999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
.++|.....++.+|+.++...||||||||+|.+...++...........+.+++|+..|+++....+++||++||+++.+
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~l 167 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDII 167 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGS
T ss_pred hhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcccc
Confidence 99999999999999999999999999999999988876533222233456788999999988878899999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC-------
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG------- 455 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~------- 455 (500)
|++++|||||++.++++.|+.++|.+|++.+++..++..++++..++..+.||+|+||+++|++|+..|.++.
T Consensus 168 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~ 247 (301)
T 3cf0_A 168 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRR 247 (301)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999888888999999999999999999999999999887642
Q ss_pred ------------------CCCcCHHHHHHHHHHHH
Q 010809 456 ------------------KAAISSKEIDDSIDRIV 472 (500)
Q Consensus 456 ------------------~~~It~~d~~~Ai~~v~ 472 (500)
...|+.+||++|+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 248 ERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp ------------------CCCBCHHHHHHHHTTCC
T ss_pred hhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 13689999999998653
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.4e-38 Score=316.24 Aligned_cols=256 Identities=46% Similarity=0.767 Sum_probs=239.5
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
....++++|+|++|++++++++.+.+.. +..++.|..+|...++++||+||||||||++|+++|++++.++++++++++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 3456788999999999999999998877 899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD 380 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~ 380 (500)
...+.|.....++.+|..++...|+||||||+|.+..++.....++..+.++.+.+++.+++++....+++||+|||.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD 167 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence 99999999999999999999999999999999999988877666667788899999999999888888999999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcC
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAIS 460 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It 460 (500)
.+|+++++++||++.+.++.|+.++|.+|++.+++...+..+.++..++..+.|++++||+++|++|...|.+++...|+
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~ 247 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVT 247 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCC
Confidence 99999999999999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcCC
Q 010809 461 SKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 461 ~~d~~~Ai~~v~~g~~~ 477 (500)
.+|+++|++++......
T Consensus 248 ~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 248 MDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcccc
Confidence 99999999998765433
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.8e-39 Score=324.43 Aligned_cols=247 Identities=40% Similarity=0.728 Sum_probs=209.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.++++|+||+|++++|++|++.+.+ +.+++.|..++...|+|++|+||||||||+|++++|++.+.+++.+++.++...
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 4678999999999999999986654 999999999999999999999999999999999999999999999999999888
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD 383 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld 383 (500)
+.+.....++.+|+.++...||++|+||+|.++..++.. ......+.+++++.+|++......++++++||+|+.||
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---ETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIID 160 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSC
T ss_pred hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---cchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCC
Confidence 888888999999999988899999999999997665431 11223467899999999988888899999999999999
Q ss_pred hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC---CCCCccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHHHc----
Q 010809 384 SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN---KKFDADVSLDVIAMRTP--GFSGADLANLLNEAAILAGRR---- 454 (500)
Q Consensus 384 ~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~---~~l~~dvdl~~la~~t~--G~sgadL~~lv~eAa~~A~r~---- 454 (500)
++++||||||+.+++++|+.++|.+||+.++++ .++..+++++.+|..+. ||+|+||.++|++|++.|.++
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999864 34567899999999754 999999999999999999875
Q ss_pred -------CCCCcCHHHHHHHHHHHHcC
Q 010809 455 -------GKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 455 -------~~~~It~~d~~~Ai~~v~~g 474 (500)
+...|+++||++|++++...
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCC
T ss_pred ccccccccCCeecHHHHHHHHHHhcCC
Confidence 23469999999999986543
No 15
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=314.93 Aligned_cols=254 Identities=53% Similarity=0.880 Sum_probs=206.2
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFV 305 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~v 305 (500)
++++|+||+|++++|+.++++++++..++.|..+|...|+++||+||||||||++|+++|++++.++++++++++.+.+.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCC-CCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch
Q 010809 306 GVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG-GGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 306 G~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~-~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~ 384 (500)
+.+...++.+|..+....|+||||||+|.+..++..... ..+.+..+.+++++.+++++....++++|++||.++.+|+
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 888899999999999889999999999999877644221 1244566789999999998877789999999999999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcccc--HHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVS--LDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvd--l~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (500)
+++|+|||++.++++.|+.++|.+|++.+++..++..+.+ ...++..+.|++++||.++|++|+..|.+++...|+.+
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~ 240 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTL 240 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBC
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 9999999999999999999999999999998777664443 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcCCCC
Q 010809 463 EIDDSIDRIVAGMEGTV 479 (500)
Q Consensus 463 d~~~Ai~~v~~g~~~~~ 479 (500)
|+++|++++..+.+++.
T Consensus 241 d~~~a~~~~~~~~~~~~ 257 (262)
T 2qz4_A 241 NFEYAVERVLAGTAKKS 257 (262)
T ss_dssp CHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhccChhhhh
Confidence 99999999988876654
No 16
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.4e-37 Score=309.59 Aligned_cols=260 Identities=64% Similarity=1.075 Sum_probs=226.1
Q ss_pred CCCcccccccccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 010809 208 GFPLAFGQSKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e 287 (500)
...+.+.++...... ..++++|+|++|.+++++++++++..+..+..+...+...|+|++|+||||||||+|++++|+.
T Consensus 18 ~~~~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 18 DSAFSFTKSRARVLT-EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp --------CCCCCBC-CCCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccccccccccccc-CCCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 344666666655443 3478999999999999999999999998999999999999999999999999999999999999
Q ss_pred cCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 288 AGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 288 ~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
.+.+++.+++.++.+.+.+.....++.+|+.+....|+++||||+|.++..+..+.....++..+.+++++.++++....
T Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 97 ARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred cCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 99999999999998888888888899999999878899999999999987765433344667788999999999988777
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
..++++++||.|+.+|++++|++||++.++++.|+.++|.+||+.+++...+..++++..++..|+|++++||+++|++|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999888888889999999999999999999999999
Q ss_pred HHHHHHcCCCCcCHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai 468 (500)
+..|.+++...|+.+|+++|+
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 999999888899999999885
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=1.2e-37 Score=305.24 Aligned_cols=246 Identities=67% Similarity=1.114 Sum_probs=222.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
...++++|+|++|.++++.+++++...+..+..+...+...|+|++|+||||||||+|++++|++.+.+++.+++.++.+
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~ 87 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 87 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH
Confidence 34567899999999999999999999998899999999999999999999999999999999999999999999999988
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
.+.+.....++.+|+.+....|+++||||+|.++..+..+.++..++..+.+++++.++++......++++++||.|+.+
T Consensus 88 ~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 88 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 88888888899999999877899999999999987775443445677888999999999998877789999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHH
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSK 462 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~ 462 (500)
|++++|++||++.++++.|+.++|.+||+.++++..+..++++..++..|+|++++||+++|++|+..|.+++...|+.+
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~ 247 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMK 247 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Confidence 99999999999999999999999999999999888888889999999999999999999999999999999988899999
Q ss_pred HHHHHH
Q 010809 463 EIDDSI 468 (500)
Q Consensus 463 d~~~Ai 468 (500)
|+++|+
T Consensus 248 dl~~a~ 253 (254)
T 1ixz_A 248 DLEEAA 253 (254)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999885
No 18
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=315.38 Aligned_cols=225 Identities=36% Similarity=0.626 Sum_probs=204.2
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhhH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFV 301 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se~~ 301 (500)
..++++|+||+|++++|+.|++.+.+ ++.|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.++++++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 45689999999999999999998887 888888774 35677999999999999999999999999 8999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~~~ 380 (500)
..++|.....++.+|..++...||||||||+|.++.+++.+ ......+.+++++.+|+++.. ..+++||++||+++
T Consensus 84 ~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 84 SKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC---CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc---cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 99999999999999999999999999999999998877653 345567889999999999863 57899999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
.+|++++| ||++.+++++|+.++|.+|++.+++..+.. .+.++..++..+.||+|+||.++|++|++.|.++
T Consensus 161 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 161 VLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp TSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred cCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887654 6778999999999999999999999999998875
No 19
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-37 Score=317.44 Aligned_cols=229 Identities=35% Similarity=0.621 Sum_probs=202.4
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+....++++|+||+|++++|+.|++.+.+ +..|+.|.. +..+++++||+||||||||++|+++|++++.+|+++++++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 34567789999999999999999998877 777877765 5677899999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-CCCCeEEEEeeCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-GNTGIIVIAATNR 378 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~-~~~~viVIaaTN~ 378 (500)
+...++|.....++.+|..++...|+||||||+|.+..+++.+ ......+.+++++..++++. ...+++||++||+
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC---------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC---cchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 9999999999999999999999999999999999998776543 23334577889999999874 4568999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
++.||++++| ||++.+++++|+.++|.+|++.++++.+.. .+.++..++..+.||+++||.++|++|+..|.++.
T Consensus 164 ~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~ 239 (322)
T 3eie_A 164 PWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 239 (322)
T ss_dssp GGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHH
T ss_pred hhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887754 66789999999999999999999999999998763
No 20
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=3e-36 Score=311.45 Aligned_cols=226 Identities=35% Similarity=0.632 Sum_probs=195.3
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
...++++|+||+|++++++.|.+.+.+ +..|+.|.. +..+++++||+||||||||++|+++|++++.+|+.++++++.
T Consensus 43 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~ 121 (355)
T 2qp9_X 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV 121 (355)
T ss_dssp ----CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHH
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHh
Confidence 356789999999999999999998877 788888876 667889999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRAD 380 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~~~ 380 (500)
..++|.....++.+|..++...|+||||||+|.+..+++.+ ......+++++|+..|+++.. ..+++||++||+++
T Consensus 122 ~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~ 198 (355)
T 2qp9_X 122 SKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG---ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW 198 (355)
T ss_dssp SCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC---------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGG
T ss_pred hhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC---cchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcc
Confidence 99999999999999999999999999999999998776542 344567788999999998754 56899999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
.+|++++| ||++.+++++|+.++|.+||+.+++..+.. .+.++..|+..+.||+|+||.++|++|++.|.++
T Consensus 199 ~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~ 271 (355)
T 2qp9_X 199 QLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 271 (355)
T ss_dssp GSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999999999999999999887653 5778999999999999999999999999999875
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=5.6e-36 Score=321.88 Aligned_cols=248 Identities=42% Similarity=0.688 Sum_probs=229.0
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMF 304 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~ 304 (500)
+.++|++|+|++++++++.+.+.. +.+|+.|..+|...|+++||+||||||||++|+++|++++.||++++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 467899999999999999999988 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch
Q 010809 305 VGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 305 vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~ 384 (500)
.|.....++.+|..+....||+|||||||.+..+++. ...+...+++++|+..|++.....+++||+|||+++.||+
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~---~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTS---CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccc---ccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 9999999999999999999999999999999887654 2345566889999999998888889999999999999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC-------
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA------- 457 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~------- 457 (500)
+++++|||++.++++.|+.++|.+||+.+++...+..+.++..++..+.||+++||.++|++|+..|.++...
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999888899999999999999999999999999999987643
Q ss_pred ----------CcCHHHHHHHHHHHHcCcC
Q 010809 458 ----------AISSKEIDDSIDRIVAGME 476 (500)
Q Consensus 458 ----------~It~~d~~~Ai~~v~~g~~ 476 (500)
.|+++||++|+.++.....
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 4899999999998765443
No 22
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=100.00 E-value=1.3e-38 Score=313.97 Aligned_cols=252 Identities=61% Similarity=1.012 Sum_probs=221.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
..++++|+|++|++++++.+.+++.++..++.|..+|.+.|+++||+||||||||++|+++|++++.||+.++++++.+.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCC-CCCCChHHHHHHHHHHHHhcCCCCC-CCeEEEEeeCCCCC
Q 010809 304 FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTG-IGGGNDEREQTLNQLLTEMDGFEGN-TGIIVIAATNRADI 381 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~-~~~~~~e~~~~L~~LL~emd~~~~~-~~viVIaaTN~~~~ 381 (500)
+.|.+...++.+|+.+....|+||||||+|.+..++..+ ....+.+..+.+++|+..++++... .+++||++||.++.
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 163 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTT
T ss_pred hcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchh
Confidence 888888888999999998899999999999998765322 1122334445778899999877543 45999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCH
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~ 461 (500)
+|++++|+|||+..++++.|+.++|.++|+.+++...+..+.++..++..+.|++|+||+++|++|+..|.+++...|+.
T Consensus 164 ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~ 243 (268)
T 2r62_A 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQ 243 (268)
T ss_dssp SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCH
T ss_pred cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCH
Confidence 99999999999999999999999999999999998888888889999999999999999999999999998888889999
Q ss_pred HHHHHHHHHHHcCc
Q 010809 462 KEIDDSIDRIVAGM 475 (500)
Q Consensus 462 ~d~~~Ai~~v~~g~ 475 (500)
+|+.+|++++....
T Consensus 244 ~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 244 QHLKEAVERGIAGL 257 (268)
T ss_dssp HHHHTSCTTCCCCC
T ss_pred HHHHHHHHHHhhcc
Confidence 99999888755443
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=7.6e-35 Score=309.60 Aligned_cols=227 Identities=35% Similarity=0.624 Sum_probs=194.7
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSE 299 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se 299 (500)
....++++|+||+|++++++.|.+.+.+ ++.|+.|.. +..+|+++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 125 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~ 203 (444)
T 2zan_A 125 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 203 (444)
T ss_dssp BCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred eccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence 3456789999999999999999998876 778877763 35677999999999999999999999999 89999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNR 378 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~ 378 (500)
+...++|.....++.+|..++...|+||||||||.++.+++.+ ......+.+++|+..|+++.. ..+++||++||+
T Consensus 204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN---ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC---CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc---cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 9999999999999999999999999999999999998777553 344566889999999998763 578999999999
Q ss_pred CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc
Q 010809 379 ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR 454 (500)
Q Consensus 379 ~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~ 454 (500)
++.+|++++| ||++.+++++|+.++|.+||+.++...+.. .+.++..++..++||+|+||.++|++|++.|.++
T Consensus 281 ~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 281 PWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp GGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred ccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999877653 5678999999999999999999999999988875
No 24
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=286.32 Aligned_cols=245 Identities=33% Similarity=0.579 Sum_probs=211.0
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..++++|+||+|++++++.+.+.+.+ +..++.|...+ ..++++||+||||||||++|+++|++++.+|++++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 155 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS 155 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc
Confidence 34578999999999999999999887 77888777664 67889999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEeeCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATNRAD 380 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~--~~~viVIaaTN~~~ 380 (500)
.+.|.....++.+|..++...|+||||||+|.+..++.. +.+....+.+++++..+++... ..+++||++||+++
T Consensus 156 ~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~---~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~ 232 (357)
T 3d8b_A 156 KWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQ 232 (357)
T ss_dssp SSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC---------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGG
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCC---CcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChh
Confidence 999999999999999999999999999999999877643 2344566888999999987653 45799999999999
Q ss_pred CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC----
Q 010809 381 ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG---- 455 (500)
Q Consensus 381 ~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~---- 455 (500)
.+++++++ ||+..+++++|+.++|.++++.+++..... .+.++..++..+.||+++||.++|++|+..+.++.
T Consensus 233 ~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 233 EIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999 999999999999999999999998765433 35578899999999999999999999999988743
Q ss_pred --------CCCcCHHHHHHHHHHHHcC
Q 010809 456 --------KAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 456 --------~~~It~~d~~~Ai~~v~~g 474 (500)
...|+.+||..|+.++...
T Consensus 311 ~~~~~~~~~~~i~~~d~~~al~~~~ps 337 (357)
T 3d8b_A 311 IATITPDQVRPIAYIDFENAFRTVRPS 337 (357)
T ss_dssp --------CCCBCHHHHHHHHHHHGGG
T ss_pred hccccccccCCcCHHHHHHHHHhcCCC
Confidence 3579999999999987643
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-33 Score=280.35 Aligned_cols=244 Identities=38% Similarity=0.595 Sum_probs=207.1
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
....++++|+|++|++++++.+.+.+.. +.+|+.|..++ .+++++||+||||||||++|+++|++++.+|+.++++++
T Consensus 12 ~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l 90 (297)
T 3b9p_A 12 VEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASL 90 (297)
T ss_dssp BCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTT
T ss_pred ccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHH
Confidence 3455788999999999999999998876 67787777665 457899999999999999999999999999999999999
Q ss_pred HHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC---CCeEEEEeeC
Q 010809 301 VEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---TGIIVIAATN 377 (500)
Q Consensus 301 ~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~---~~viVIaaTN 377 (500)
...+.+.+...++.+|..+....|+||||||+|.+...+.... .+......++++..++++... .+++||++||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn 167 (297)
T 3b9p_A 91 TSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE---HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATN 167 (297)
T ss_dssp SSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC--------CCSHHHHHHHHHHHHHCC------CEEEEEEES
T ss_pred hhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc---chHHHHHHHHHHHHHhcccccCCCCcEEEEeecC
Confidence 9988998889999999999999999999999999987765422 222345677888888876543 5799999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCC
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGK 456 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~ 456 (500)
+++.+++++++ ||+..+++++|+.++|..|++.+++..+.. .+.++..++..+.|++++||.++|++|+..|.++..
T Consensus 168 ~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~ 245 (297)
T 3b9p_A 168 RPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELN 245 (297)
T ss_dssp CGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC
T ss_pred ChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999999999998765532 345688999999999999999999999999988752
Q ss_pred ------------CCcCHHHHHHHHHHH
Q 010809 457 ------------AAISSKEIDDSIDRI 471 (500)
Q Consensus 457 ------------~~It~~d~~~Ai~~v 471 (500)
..|+.+||..|+.++
T Consensus 246 ~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 246 VEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp --------CCCCCCCCHHHHHHHTTSC
T ss_pred hhhcccccccccCCcCHHHHHHHHHHc
Confidence 579999999998754
No 26
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=283.51 Aligned_cols=245 Identities=37% Similarity=0.594 Sum_probs=201.6
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+....++++|+||+|++++++.+.+.+.. +..++.|...+ ..++++||+||||||||++|+++|.+++.+|++++|++
T Consensus 105 ~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~ 183 (389)
T 3vfd_A 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS 183 (389)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred hhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence 44566788999999999999999998877 66777777666 45789999999999999999999999999999999999
Q ss_pred hHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC--CCCeEEEEeeC
Q 010809 300 FVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG--NTGIIVIAATN 377 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~--~~~viVIaaTN 377 (500)
+...+.|.....++.+|..++...|+||||||||.++.++..+ ......+.+++|+..++++.. ..+++||++||
T Consensus 184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG---EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC-----------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc---cchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 9999999999999999999999999999999999997766432 233456778888888887654 45799999999
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHc--
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRR-- 454 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~-- 454 (500)
+++.+++++++ ||+..++++.|+.++|.+||+.++...... .+.++..++..+.|+++++|.++|++|+..+.++
T Consensus 261 ~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 261 RPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp CGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred CchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999 999999999999999999999998775433 3456889999999999999999999999999887
Q ss_pred ----------CCCCcCHHHHHHHHHHH
Q 010809 455 ----------GKAAISSKEIDDSIDRI 471 (500)
Q Consensus 455 ----------~~~~It~~d~~~Ai~~v 471 (500)
....|+.+||..++.++
T Consensus 339 ~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 339 PEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp CC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred hhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 34579999999999875
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.6e-35 Score=335.63 Aligned_cols=233 Identities=42% Similarity=0.774 Sum_probs=207.5
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
...+.++|+|++|++++|+.+.+++.+ +..+..|..++..+++++||+||||||||+||+++|++++.+|+.++++++.
T Consensus 469 ~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~ 548 (806)
T 1ypw_A 469 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 548 (806)
T ss_dssp CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSST
T ss_pred ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhh
Confidence 345688999999999999999999887 7888889999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 302 EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 302 ~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
.+|+|..+..++.+|+.++...||||||||||.++..++...+.......+++++||.+|+++....+++||+|||+++.
T Consensus 549 ~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 549 TMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 99999999999999999999999999999999998887653333344667899999999999988889999999999999
Q ss_pred CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcC
Q 010809 382 LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRG 455 (500)
Q Consensus 382 Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~ 455 (500)
||++++|||||++.+++++|+.++|.+||+.++++.++..++++..++..+.|||++||.++|++|+..|.++.
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999998875
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.97 E-value=7.9e-33 Score=278.54 Aligned_cols=227 Identities=17% Similarity=0.252 Sum_probs=159.9
Q ss_pred hCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHH----HhCCCeEEEEcCcch
Q 010809 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----KENAPCIVFVDEIDA 334 (500)
Q Consensus 259 ~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a----~~~~p~IIfIDEID~ 334 (500)
.+.+.|+++||+||||||||++|+++|++++.+|++++++++...++|.....++++|+.+ +...||||||||||.
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~ 110 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDA 110 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC-
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhh
Confidence 4678899999999999999999999999999999999999999999999999999999998 577899999999999
Q ss_pred hhhccCCCCCCCChHHHHHHHHHHHHhcCC-----------CCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCH
Q 010809 335 VGRQRGTGIGGGNDEREQTLNQLLTEMDGF-----------EGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDI 403 (500)
Q Consensus 335 l~~~r~~~~~~~~~e~~~~L~~LL~emd~~-----------~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~ 403 (500)
++.+++.. ..+........+.|+..+|+. ....+++||+|||+++.+|++++|||||++.++ .|+.
T Consensus 111 ~~~~~~~~-~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~ 187 (293)
T 3t15_A 111 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 187 (293)
T ss_dssp --------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCH
T ss_pred hcCCCCCC-ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCH
Confidence 98755321 111112334556677776632 245679999999999999999999999998887 5799
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHH-------HHHHHHH-HHcCCCCcCHHHHHHHHHHHHcCc
Q 010809 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLL-------NEAAILA-GRRGKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 404 ~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv-------~eAa~~A-~r~~~~~It~~d~~~Ai~~v~~g~ 475 (500)
++|.+|++.++... +++...++..+.||++++|..+. .++.... ...+.+.+ -.+++.+.
T Consensus 188 ~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~~~g~~~~--------~~~~~~~~ 255 (293)
T 3t15_A 188 EDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKI--------GDKLLNSF 255 (293)
T ss_dssp HHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHTCSTTC--------HHHHTSCS
T ss_pred HHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHhCHHHH--------HHHHHcCC
Confidence 99999999887643 46688899999999998886421 1111111 11121111 11233333
Q ss_pred CCCCCCChhhHHHHHhhhccccccC
Q 010809 476 EGTVMTDGKSKSLVAYHEVGHAICG 500 (500)
Q Consensus 476 ~~~~~~~~~ek~~~a~hE~gha~~~ 500 (500)
.......+.+..+.++||+||++++
T Consensus 256 ~~~~~~~~~~~~~~~l~~~g~~~~~ 280 (293)
T 3t15_A 256 DGPPTFEQPKMTIEKLLEYGNMLVQ 280 (293)
T ss_dssp SCSCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccHHHHHHHHHHHHH
Confidence 3344455667889999999999863
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=4.4e-29 Score=283.03 Aligned_cols=246 Identities=42% Similarity=0.694 Sum_probs=223.5
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHH-hcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..+.++|+||+|++++++++.+.+.. +.+|+.|..++...+.++||+||||||||++|+++|++++.+++.++++++..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 34579999999999999999999988 99999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL 382 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L 382 (500)
.+.+.....++.+|+.+....|+++||||+|.+..+++. ...+...+.+++|+..++++.....+++|++||+++.+
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~---~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~l 353 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREK---THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSC---CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccc---ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhc
Confidence 999999999999999999999999999999999887654 23445567889999999998888899999999999999
Q ss_pred chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCC-----
Q 010809 383 DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKA----- 457 (500)
Q Consensus 383 d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~----- 457 (500)
|+++.+++||++.+.++.|+.++|.+|++.++++..+..+.++..++..+.||+++|+..++++|+..+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 999999999999999999999999999999999999888899999999999999999999999999988775432
Q ss_pred ------------CcCHHHHHHHHHHHH
Q 010809 458 ------------AISSKEIDDSIDRIV 472 (500)
Q Consensus 458 ------------~It~~d~~~Ai~~v~ 472 (500)
.++.+|+..++....
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~ 460 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSN 460 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSC
T ss_pred hhccchhhhhhhhhhhhhhhccccccC
Confidence 356677877777653
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.92 E-value=3.2e-25 Score=236.14 Aligned_cols=170 Identities=25% Similarity=0.331 Sum_probs=130.2
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhHH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~~ 302 (500)
.+...|++++|++++++.+.++++.++. |..+|+++||+||||||||++|+++|++++ ++|+.++++++..
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3456799999999999999998877653 445678999999999999999999999998 9999999999999
Q ss_pred hhhhhhhhHHHHHHHHH---HhCCCeEEEEcCcchhhhccCCCCCCCChHH-H---------------HHHHHHHHHhc-
Q 010809 303 MFVGVGASRVRDLFKKA---KENAPCIVFVDEIDAVGRQRGTGIGGGNDER-E---------------QTLNQLLTEMD- 362 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a---~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~-~---------------~~L~~LL~emd- 362 (500)
.++|..+. ++++|+.+ +...||||||||+|.++.+|+....++..+. . +..++++..++
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99998887 99999999 7788999999999999988865422211111 1 11233555554
Q ss_pred -CCCCCCCeEEEEeeCCCCCCchhhcCCCCcce--EEEecCCC
Q 010809 363 -GFEGNTGIIVIAATNRADILDSALLRPGRFDR--QVTVDVPD 402 (500)
Q Consensus 363 -~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr--~I~v~~Pd 402 (500)
+......++|+++||+++.+|++++||||||+ .+.++.|+
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~ 225 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPK 225 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCC
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCc
Confidence 33333445566888999999999999999998 56777774
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=6.4e-24 Score=217.78 Aligned_cols=222 Identities=20% Similarity=0.308 Sum_probs=166.0
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechhhHH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSEFVE 302 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se~~~ 302 (500)
.+..+|++++|.+++++.+..+.+.+... ..+++++||+||||||||++|+++|++++ .||+.+++..+..
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~-------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 110 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG-------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFS 110 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT-------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC-------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhh
Confidence 34556999999999999988888776543 23457999999999999999999999986 4899998876432
Q ss_pred hhh-------------------------------------------------hhhhhHHHHHHHHHHh---------CCC
Q 010809 303 MFV-------------------------------------------------GVGASRVRDLFKKAKE---------NAP 324 (500)
Q Consensus 303 ~~v-------------------------------------------------G~~~~~vr~lf~~a~~---------~~p 324 (500)
.+. |.....++..+..+.. ..|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~ 190 (368)
T 3uk6_A 111 LEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIP 190 (368)
T ss_dssp SSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CB
T ss_pred cccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccC
Confidence 211 1113455666655432 126
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee-----------CCCCCCchhhcCCCCcc
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT-----------NRADILDSALLRPGRFD 393 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT-----------N~~~~Ld~aLlrpgRfd 393 (500)
+||||||+|.+. . ..++.|+..++.. ...++++++. |.+..+++++++ ||.
T Consensus 191 ~vl~IDEi~~l~-----------~---~~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~ 252 (368)
T 3uk6_A 191 GVLFIDEVHMLD-----------I---ESFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLL 252 (368)
T ss_dssp CEEEEESGGGSB-----------H---HHHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEE
T ss_pred ceEEEhhccccC-----------h---HHHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccCCHHHHh--hcc
Confidence 899999999982 2 3455666666543 2245544443 347789999999 997
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 394 RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
. +.+++|+.+++.++++.++...... ++..++.++..+.+.+++++.++|+.|+..|..++...|+.+|+++|++.++
T Consensus 253 ~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 253 I-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp E-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred E-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 5 8999999999999999888654432 2334778888887339999999999999999999999999999999998643
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.91 E-value=6.4e-24 Score=212.66 Aligned_cols=226 Identities=18% Similarity=0.277 Sum_probs=173.2
Q ss_pred cc-cccCChHHHHHHHHHHHHhcChhhhhhhCCCC---CceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEech
Q 010809 230 FD-DVAGVDEAKQDFMEVVEFLKKPERFTAIGARI---PKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGS 298 (500)
Q Consensus 230 f~-dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~---p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~s 298 (500)
++ +|+|++++++.+.+++..+..+..+.+.|... +.++||+||||||||++|+++|+++ ..++++++++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 44 79999999999999999876677777777554 3479999999999999999999987 4499999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++...+.|.....++.+|+.+ .++||||||+|.+...+.. .+.....++.|+..++. ...++++|++||.
T Consensus 109 ~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~-----~~~~~~~~~~Ll~~l~~--~~~~~~~i~~~~~ 178 (309)
T 3syl_A 109 DLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE-----RDYGQEAIEILLQVMEN--NRDDLVVILAGYA 178 (309)
T ss_dssp GTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC--------CCTHHHHHHHHHHHHH--CTTTCEEEEEECH
T ss_pred HhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc-----ccccHHHHHHHHHHHhc--CCCCEEEEEeCCh
Confidence 999989998888888998887 3579999999999755432 12234566777777764 3456889999986
Q ss_pred CC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCcc-ccHHHHHH--------hCCCCcHHHHHHHH
Q 010809 379 AD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDAD-VSLDVIAM--------RTPGFSGADLANLL 444 (500)
Q Consensus 379 ~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~d-vdl~~la~--------~t~G~sgadL~~lv 444 (500)
++ .++++|++ ||+..+.++.|+.+++.+|++.++......-+ ..+..++. .++| +++++.+++
T Consensus 179 ~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g-n~r~l~~~l 255 (309)
T 3syl_A 179 DRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFA-NARSIRNAL 255 (309)
T ss_dssp HHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCC-HHHHHHHHH
T ss_pred HHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCC-cHHHHHHHH
Confidence 53 35789999 99999999999999999999999876554322 22444544 3455 899999999
Q ss_pred HHHHHHHHHc----CCCCcCHHHHHHHH
Q 010809 445 NEAAILAGRR----GKAAISSKEIDDSI 468 (500)
Q Consensus 445 ~eAa~~A~r~----~~~~It~~d~~~Ai 468 (500)
+.|...+..+ ....++.+++....
T Consensus 256 ~~a~~~~~~r~~~~~~~~~~~~~l~~i~ 283 (309)
T 3syl_A 256 DRARLRQANRLFTASSGPLDARALSTIA 283 (309)
T ss_dssp HHHHHHHHHHHHHC---CEEHHHHHEEC
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHhhcc
Confidence 9999766554 44667777766443
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=1.3e-22 Score=206.13 Aligned_cols=221 Identities=20% Similarity=0.259 Sum_probs=169.7
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s 298 (500)
..+.+...+.+|++++|.+++++.+.+.+.....+ ...+.++||+||||||||++|+++|++++.+|+.++|+
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~ 89 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAP 89 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecch
Confidence 34556667779999999999999999988765322 23456899999999999999999999999999999997
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-------------
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------------- 365 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~------------- 365 (500)
.+. ....+..++.. ...+++|||||||.+. ...+.. |+..++...
T Consensus 90 ~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~-----------~~~~~~---Ll~~l~~~~~~~~~~~~~~~~~ 147 (338)
T 3pfi_A 90 MIE------KSGDLAAILTN--LSEGDILFIDEIHRLS-----------PAIEEV---LYPAMEDYRLDIIIGSGPAAQT 147 (338)
T ss_dssp GCC------SHHHHHHHHHT--CCTTCEEEEETGGGCC-----------HHHHHH---HHHHHHTSCC---------CCC
T ss_pred hcc------chhHHHHHHHh--ccCCCEEEEechhhcC-----------HHHHHH---HHHHHHhccchhhcccCccccc
Confidence 653 12233344433 2457899999999982 333334 444444321
Q ss_pred ---CCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHH
Q 010809 366 ---GNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLA 441 (500)
Q Consensus 366 ---~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~ 441 (500)
..+++++|++||+...++++|++ ||+..+.++.|+.+++.++++.++...... ++..+..++..++| +++++.
T Consensus 148 ~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~ 224 (338)
T 3pfi_A 148 IKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIAL 224 (338)
T ss_dssp CCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHH
T ss_pred eecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHH
Confidence 01248999999999999999999 999999999999999999999888765543 23346778888888 899999
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 442 NLLNEAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 442 ~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
++++.+...|...+...|+.+++..++...
T Consensus 225 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 225 RLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 999999988888888899999999998874
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=1.3e-21 Score=196.88 Aligned_cols=218 Identities=22% Similarity=0.256 Sum_probs=167.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+..+.+|++++|.+++++.+.+.+...... ...+.+++|+||||||||++|++++.+++.+|+.++|+.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 345668999999999999999888765321 124568999999999999999999999999999999876532
Q ss_pred hhhhhhhHHHHHHHHHHh--CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC-----CC--------CCC
Q 010809 304 FVGVGASRVRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG-----FE--------GNT 368 (500)
Q Consensus 304 ~vG~~~~~vr~lf~~a~~--~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~-----~~--------~~~ 368 (500)
..+++..... ..+++|||||+|.+ ....+..+..++.+..- .. ...
T Consensus 77 --------~~~l~~~l~~~~~~~~~l~lDEi~~l-----------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 --------PGDLAAILANSLEEGDILFIDEIHRL-----------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp --------HHHHHHHHTTTCCTTCEEEETTTTSC-----------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred --------hHHHHHHHHHhccCCCEEEEECCccc-----------ccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1223333322 45789999999998 23344445555544210 00 113
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
++++|++||.+..+++++++ ||+..+.++.|+.+++.++++.++...+.. ++..+..++..++| +++++.++++.+
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 58899999999999999998 998899999999999999999988755433 23346788888987 889999999999
Q ss_pred HHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
...|...+...|+.+++..++...
T Consensus 215 ~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 215 RDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp TTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHh
Confidence 888877777889999999988765
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=2.4e-21 Score=192.96 Aligned_cols=237 Identities=23% Similarity=0.354 Sum_probs=163.1
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhhhhhh-CCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAI-GARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~~-G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG~ 307 (500)
++|+|++++++.+...+.. +..+.....+ +...|.++||+||||||||++|+++|+.++.+++.++|+++.+ .++|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4699999999999987764 2222111111 1235678999999999999999999999999999999998876 45554
Q ss_pred h-hhHHHHHHHHH-----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEE
Q 010809 308 G-ASRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVI 373 (500)
Q Consensus 308 ~-~~~vr~lf~~a-----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVI 373 (500)
. ...+++++..+ ....++||||||+|.+...... .+.........+.|+..+++.. ...++++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~--~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i 172 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFI 172 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSC--CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccc--cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEE
Confidence 3 34466666532 1123679999999999765532 1222233345677777777531 23468888
Q ss_pred Eee----CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh-----------cCCCCC---ccccHHHHHHhC---
Q 010809 374 AAT----NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-----------SNKKFD---ADVSLDVIAMRT--- 432 (500)
Q Consensus 374 aaT----N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l-----------~~~~l~---~dvdl~~la~~t--- 432 (500)
+++ +.+..+++++++ ||+..+.+++|+.+++.+|++.++ ...... ++..++.++..+
T Consensus 173 ~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 250 (310)
T 1ofh_A 173 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRV 250 (310)
T ss_dssp EEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHH
T ss_pred EcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhh
Confidence 884 567789999998 999889999999999999998422 111211 222355666654
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHc-----CCC-CcCHHHHHHHHHHH
Q 010809 433 ----PGFSGADLANLLNEAAILAGRR-----GKA-AISSKEIDDSIDRI 471 (500)
Q Consensus 433 ----~G~sgadL~~lv~eAa~~A~r~-----~~~-~It~~d~~~Ai~~v 471 (500)
++.+.+++.++++.+...+..+ +.. .|+.+++++++...
T Consensus 251 ~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 251 NEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred cccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 1348999999999877543322 222 49999999888753
No 36
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.85 E-value=9.4e-21 Score=187.16 Aligned_cols=226 Identities=20% Similarity=0.265 Sum_probs=151.9
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH-Hhhhhh
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV-EMFVGV 307 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~-~~~vG~ 307 (500)
..+.++|.+++.+.+.+....+. ......+...+.++||+||||||||++|+++|.+.+.||+.+++++.. ....+.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~ 108 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETA 108 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHH
Confidence 34678899888777776422221 111222356677999999999999999999999999999999887522 111122
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCC-CCCeEEEEeeCCCCCCch-h
Q 010809 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEG-NTGIIVIAATNRADILDS-A 385 (500)
Q Consensus 308 ~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~-~~~viVIaaTN~~~~Ld~-a 385 (500)
....++.+|+.+....+++|||||+|.++..+..+ .......++.|...+++... ...++||++||.++.+++ .
T Consensus 109 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~----~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~ 184 (272)
T 1d2n_A 109 KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG----PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEME 184 (272)
T ss_dssp HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT----TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC----hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhh
Confidence 33567889998887888999999999997665322 12223455566666665543 446889999999988887 5
Q ss_pred hcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC----cHHHHHHHHHHHHHHHHHcCCCCcCH
Q 010809 386 LLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF----SGADLANLLNEAAILAGRRGKAAISS 461 (500)
Q Consensus 386 LlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~----sgadL~~lv~eAa~~A~r~~~~~It~ 461 (500)
+.+ ||+..+.+|.++. |.+|.........+ .+.++..++..+.|+ +.+++.++++.|...+ .....
T Consensus 185 l~~--rf~~~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~ 254 (272)
T 1d2n_A 185 MLN--AFSTTIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRV 254 (272)
T ss_dssp CTT--TSSEEEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHH
T ss_pred hhc--ccceEEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHH
Confidence 555 9988888765554 34444433332333 345678889888886 6777777777665332 33455
Q ss_pred HHHHHHHHH
Q 010809 462 KEIDDSIDR 470 (500)
Q Consensus 462 ~d~~~Ai~~ 470 (500)
+++.++++.
T Consensus 255 ~~~~~~l~~ 263 (272)
T 1d2n_A 255 RKFLALLRE 263 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 556555554
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=1.5e-20 Score=190.02 Aligned_cols=210 Identities=18% Similarity=0.222 Sum_probs=146.9
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
...|.++..+.+|++++|.+++++.+.+.+.. .+.|..+|++||||||||++|+++|++++.+++++++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~ 81 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNG 81 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEET
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 34677888889999999999999988887762 2445678889999999999999999999999999998
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhC-----CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 298 SEFVEMFVGVGASRVRDLFKKAKEN-----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 298 se~~~~~vG~~~~~vr~lf~~a~~~-----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
++.. ...++..+...... .+++|||||+|.+.. .+.+..+..++.+. ..++.+
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~----------~~~~~~L~~~le~~-----~~~~~i 139 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL----------AESQRHLRSFMEAY-----SSNCSI 139 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG----------HHHHHHHHHHHHHH-----GGGCEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc----------HHHHHHHHHHHHhC-----CCCcEE
Confidence 7743 23344444443222 568999999999931 23344444444432 245789
Q ss_pred EEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHh-------c--CCCCCccccHHHHHHhCCCCcHHHHHHH
Q 010809 373 IAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHG-------S--NKKFDADVSLDVIAMRTPGFSGADLANL 443 (500)
Q Consensus 373 IaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l-------~--~~~l~~dvdl~~la~~t~G~sgadL~~l 443 (500)
|++||.+..+++++++ ||. .+.++.|+.++|.+|++... . +..+.+...++.++..+.| +.+++.+.
T Consensus 140 I~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~ 215 (324)
T 3u61_B 140 IITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGE 215 (324)
T ss_dssp EEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHH
T ss_pred EEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHH
Confidence 9999999999999999 995 79999999999877655432 2 2333331447788888887 66666666
Q ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 444 LNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 444 v~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
++.++ ....|+.+++++++..
T Consensus 216 L~~~~------~~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 216 LDSYS------SKGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHG------GGTCBCC---------
T ss_pred HHHHh------ccCCCCHHHHHHHhCC
Confidence 66655 2234888877766543
No 38
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=3.7e-20 Score=196.37 Aligned_cols=222 Identities=18% Similarity=0.269 Sum_probs=157.6
Q ss_pred CCCcCccccc-CChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEech
Q 010809 225 NTGVTFDDVA-GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGS 298 (500)
Q Consensus 225 ~~~~~f~dv~-G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~s 298 (500)
.+..+|++++ |.+... .+..+......+. . +.+++|+||||||||+||+++++++ +.++++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~-a~~~~~~~a~~~~-------~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSF-AYHAALEVAKHPG-------R-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp CTTCSGGGCCCCTTTHH-HHHHHHHHHHSTT-------S-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCCChhhcCCCCchHH-HHHHHHHHHhCCC-------C-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 3467899988 544332 2333333333332 2 5589999999999999999999987 8999999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++...+.+.........|.......+++|||||+|.+..+ +..++.+..++..+. .....+||++.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~---------~~~q~~l~~~l~~l~---~~~~~iIitt~~~ 237 (440)
T 2z4s_A 170 KFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK---------TGVQTELFHTFNELH---DSGKQIVICSDRE 237 (440)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC---------HHHHHHHHHHHHHHH---TTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEECCC
Confidence 9877665543332223344433336789999999998432 123334444444332 2334555555555
Q ss_pred CCC---CchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcC--CCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 379 ADI---LDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 379 ~~~---Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
+.. +++++++ ||. ..+.+++|+.++|.+|++..+.. ..++++ .+..++..++| +.+++.++++.+...|
T Consensus 238 ~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 238 PQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp GGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 554 7899999 886 68999999999999999988763 334443 37889999988 9999999999999998
Q ss_pred HHcCCCCcCHHHHHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai~~v~ 472 (500)
...+. .||.+++++++....
T Consensus 314 ~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 314 ETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp HHSSS-CCCHHHHHHHTSTTT
T ss_pred HHhCC-CCCHHHHHHHHHHHh
Confidence 77665 699999999988765
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.4e-19 Score=169.60 Aligned_cols=206 Identities=22% Similarity=0.220 Sum_probs=151.8
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEE
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~i 295 (500)
|.+...+.+|++++|.++.++.+.+.+..- .+.+++|+||||||||++|+++++++ ..+++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 445566788999999999999888776531 12259999999999999999999875 5678888
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHH------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTG 369 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~ 369 (500)
++++... ...++..+.... ...+++|+|||+|.+. .+....+..++.. ...+
T Consensus 75 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~~~~l~~~l~~-----~~~~ 132 (226)
T 2chg_A 75 NASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------ADAQAALRRTMEM-----YSKS 132 (226)
T ss_dssp ETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC-----------HHHHHHHHHHHHH-----TTTT
T ss_pred ccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcC-----------HHHHHHHHHHHHh-----cCCC
Confidence 8765432 122223233222 2467899999999982 2333444444443 2356
Q ss_pred eEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHH
Q 010809 370 IIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAA 448 (500)
Q Consensus 370 viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa 448 (500)
+.+|++||.++.+++++.+ ||. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +++.+.++++.++
T Consensus 133 ~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 133 CRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 7889999999999999999 997 89999999999999999887543332 23346778888887 8888888888877
Q ss_pred HHHHHcCCCCcCHHHHHHHHH
Q 010809 449 ILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 449 ~~A~r~~~~~It~~d~~~Ai~ 469 (500)
..+ +.|+.+|+++++.
T Consensus 209 ~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 209 AIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HTC-----SCBCHHHHHHHHH
T ss_pred hcC-----ceecHHHHHHHhc
Confidence 554 5799999999875
No 40
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.83 E-value=6.6e-20 Score=187.44 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=165.1
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEec
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISG 297 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~ 297 (500)
...+++++|.++..+++.+.+..... ...+.+++|+||||||||++|+++++++ +.++++++|
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 34568999999999888876654211 1345689999999999999999999987 889999998
Q ss_pred hhhHH------hhh----------hhhh-hHHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHH
Q 010809 298 SEFVE------MFV----------GVGA-SRVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLT 359 (500)
Q Consensus 298 se~~~------~~v----------G~~~-~~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~ 359 (500)
....+ ... +... .....++..+.. ..|++|||||+|.+...+ ..++.+..++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~ 157 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITR 157 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---------CCChHHHhHhh
Confidence 75321 110 1112 223444444433 347899999999995331 14567888888
Q ss_pred HhcCCCCCCCeEEEEeeCCC---CCCchhhcCCCCcce-EEEecCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHh
Q 010809 360 EMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMR 431 (500)
Q Consensus 360 emd~~~~~~~viVIaaTN~~---~~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~la~~ 431 (500)
.++....+.++++|++||.+ +.+++.+++ ||.. .+.+++|+.+++.++++.++.. ..+++ ..++.++..
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~l~~~ 234 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP-DVVPLCAAL 234 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS-SHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH-HHHHHHHHH
Confidence 77654324578999999987 678999998 8875 8999999999999999988753 23333 235667766
Q ss_pred CC---CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 432 TP---GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 432 t~---G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
+. | +++.+.++|+.|+..|..++...|+.+++++|++...
T Consensus 235 ~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 235 AAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH
T ss_pred HHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 65 7 8899999999999999888889999999999998764
No 41
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.83 E-value=5.5e-20 Score=189.48 Aligned_cols=233 Identities=24% Similarity=0.289 Sum_probs=159.3
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhh---hhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh-hhhh
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFT---AIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM-FVGV 307 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~---~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~-~vG~ 307 (500)
.|+|++++++.+...+.......... ......+.++||+||||||||++|+++|..++.||+.++|+++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999998885321111100 0112356789999999999999999999999999999999998754 7776
Q ss_pred h-hhHHHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-----------------
Q 010809 308 G-ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------- 365 (500)
Q Consensus 308 ~-~~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~----------------- 365 (500)
. ...++.+|..+ ....++||||||+|.+...+.....+.+...+.+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 5 55677777765 3345789999999999877655433344444557888888888431
Q ss_pred --CCCCeEEEEeeCCC----------CC-----------------------------------CchhhcCCCCcceEEEe
Q 010809 366 --GNTGIIVIAATNRA----------DI-----------------------------------LDSALLRPGRFDRQVTV 398 (500)
Q Consensus 366 --~~~~viVIaaTN~~----------~~-----------------------------------Ld~aLlrpgRfdr~I~v 398 (500)
...++++|+++|.. .. +.++|+. ||+..+.+
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~ 253 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATL 253 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEEC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeec
Confidence 23455666666642 11 6788888 99999999
Q ss_pred cCCCHHHHHHHHHHH----h-------cCCCCC---ccccHHHHHH---hCCCCcHHHHHHHHHHHHHHHHHcCCC----
Q 010809 399 DVPDIRGRTEILKVH----G-------SNKKFD---ADVSLDVIAM---RTPGFSGADLANLLNEAAILAGRRGKA---- 457 (500)
Q Consensus 399 ~~Pd~~eR~~IL~~~----l-------~~~~l~---~dvdl~~la~---~t~G~sgadL~~lv~eAa~~A~r~~~~---- 457 (500)
++|+.+++.+|+... + ...... .+..++.++. .++ ++.++|+++++.+...+..+...
T Consensus 254 ~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~-~gaR~L~~~ie~~~~~~l~~~~~~~~~ 332 (363)
T 3hws_A 254 NELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK-TGARGLRSIVEAALLDTMYDLPSMEDV 332 (363)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT-CTTTTHHHHHHHHHHHHHHSTTTCCCS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc-cCchHHHHHHHHHHHHHHHhcccccCC
Confidence 999999999998851 1 111221 1122445553 344 47899999999998887665421
Q ss_pred ---CcCHHHHHHH
Q 010809 458 ---AISSKEIDDS 467 (500)
Q Consensus 458 ---~It~~d~~~A 467 (500)
.|+.+++++.
T Consensus 333 ~~~~I~~~~v~~~ 345 (363)
T 3hws_A 333 EKVVIDESVIDGQ 345 (363)
T ss_dssp EEEECHHHHTTCC
T ss_pred ceeEEcHHHHhCc
Confidence 3555555443
No 42
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=8.1e-21 Score=206.57 Aligned_cols=225 Identities=23% Similarity=0.287 Sum_probs=149.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH----
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE---- 302 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~---- 302 (500)
..-.+|++|++++++.+.+.+....-.. .. .+.+++|+||||||||++|+++|+.++.++..++++.+.+
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~-----~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTK-----SL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSS-----SC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhcc-----cC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 3456789999999999987655311100 01 3457999999999999999999999999999999877544
Q ss_pred -----hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC----------
Q 010809 303 -----MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN---------- 367 (500)
Q Consensus 303 -----~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~---------- 367 (500)
.++|.....+...|..+....| |+||||||.+...+. ....+.|+..||.....
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~----------~~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR----------GDPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -------------CHHHHHHTTCSSSE-EEEEEESSSCC-------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc----------cCHHHHHHHHHhhhhcceeecccCCee
Confidence 5667777777888887765554 999999999965431 22456677777643211
Q ss_pred ---CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhc-----CCCCC------ccccHHHHHH-hC
Q 010809 368 ---TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGS-----NKKFD------ADVSLDVIAM-RT 432 (500)
Q Consensus 368 ---~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~-----~~~l~------~dvdl~~la~-~t 432 (500)
.++++|+|||+++.++++|++ ||+ .+.++.|+.+++.+|++.++. ...+. ++..+..++. .+
T Consensus 220 ~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 220 FDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp CBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred ecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 568999999999999999999 995 799999999999999998762 22221 1122444444 23
Q ss_pred CCCcHHHHHHHHHHHH----HHHHHc--CCCCcCHHHHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAA----ILAGRR--GKAAISSKEIDDSIDRI 471 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa----~~A~r~--~~~~It~~d~~~Ai~~v 471 (500)
...+.++|++.+..++ ..+.+. +...|+.+++++++...
T Consensus 297 ~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 297 REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 2235666665555444 444333 34579999999888654
No 43
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.82 E-value=1.1e-19 Score=193.22 Aligned_cols=208 Identities=24% Similarity=0.291 Sum_probs=155.2
Q ss_pred cCCCCcCcccccCChHHH---HHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 223 EPNTGVTFDDVAGVDEAK---QDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k---~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+...+.+|++++|+++++ ..+...+..-+ +.++||+||||||||++|+++|+..+.+|+.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~------------~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAGH------------LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTC------------CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcCC------------CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 344567999999999999 56666555321 137999999999999999999999999999998743
Q ss_pred hHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 300 FVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 300 ~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.+...++.++..+.. ..++||||||||.+... ..+.|+..++. ..+++|++
T Consensus 86 -------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------------~q~~LL~~le~----~~v~lI~a 140 (447)
T 3pvs_A 86 -------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------------QQDAFLPHIED----GTITFIGA 140 (447)
T ss_dssp -------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------------CCHHHHHT----TSCEEEEE
T ss_pred -------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------------HHHHHHHHHhc----CceEEEec
Confidence 234456666666643 45789999999998322 23445555553 45777777
Q ss_pred e--CCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC-------C-CccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 376 T--NRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK-------F-DADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 376 T--N~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~-------l-~~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
| |....++++|++ |+. ++.++.|+.+++..+++..+.... . -++..++.++..++| +.+++.++++
T Consensus 141 tt~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 141 TTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp ESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred CCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 7 445589999999 986 788999999999999999886521 1 122346788888888 8999999999
Q ss_pred HHHHHHHHc--CCCCcCHHHHHHHHHHH
Q 010809 446 EAAILAGRR--GKAAISSKEIDDSIDRI 471 (500)
Q Consensus 446 eAa~~A~r~--~~~~It~~d~~~Ai~~v 471 (500)
.|+..+... +...||.+++++++.+.
T Consensus 217 ~a~~~a~~~~~~~~~It~e~v~~~l~~~ 244 (447)
T 3pvs_A 217 MMADMAEVDDSGKRVLKPELLTEIAGER 244 (447)
T ss_dssp HHHHHSCBCTTSCEECCHHHHHHHHTCC
T ss_pred HHHHhcccccCCCCccCHHHHHHHHhhh
Confidence 999887533 45679999999888653
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=5.4e-20 Score=198.72 Aligned_cols=230 Identities=19% Similarity=0.255 Sum_probs=151.3
Q ss_pred ccccccccCCCCcCcccccCChHHHHHHHHHHHHhc--ChhhhhhhCC---CCCceEEEEcCCCChHHHHHHHHHHhcCC
Q 010809 216 SKAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLK--KPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (500)
Q Consensus 216 ~~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~--~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAralA~e~~~ 290 (500)
....+|.++..+.+|+|++|.+++++++.+++.... .+..|...|. ..++++||+||||||||++|+++|++++.
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345688999999999999999999999998887532 2223333333 35679999999999999999999999999
Q ss_pred CEEEEechhhHHhhhhhhh-------hHHHHHHHHH-----HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHH
Q 010809 291 PFFSISGSEFVEMFVGVGA-------SRVRDLFKKA-----KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLL 358 (500)
Q Consensus 291 pfi~is~se~~~~~vG~~~-------~~vr~lf~~a-----~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL 358 (500)
++++++++++......... ..++.+|..+ ....++||||||+|.+.... .+....+..++
T Consensus 104 ~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~--------~~~l~~L~~~l 175 (516)
T 1sxj_A 104 DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD--------RGGVGQLAQFC 175 (516)
T ss_dssp EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------TTHHHHHHHHH
T ss_pred CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------HHHHHHHHHHH
Confidence 9999999876543221110 1123344433 23567899999999995321 11223344444
Q ss_pred HHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC--CCCCccccHHHHHHhCCCCc
Q 010809 359 TEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFS 436 (500)
Q Consensus 359 ~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~la~~t~G~s 436 (500)
.. ....+++|+++.....+. .+.+ | ...+.++.|+.+++.+++...+.. ..++++ .+..++..+.| +
T Consensus 176 ~~-----~~~~iIli~~~~~~~~l~-~l~~--r-~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~-~l~~la~~s~G-d 244 (516)
T 1sxj_A 176 RK-----TSTPLILICNERNLPKMR-PFDR--V-CLDIQFRRPDANSIKSRLMTIAIREKFKLDPN-VIDRLIQTTRG-D 244 (516)
T ss_dssp HH-----CSSCEEEEESCTTSSTTG-GGTT--T-SEEEECCCCCHHHHHHHHHHHHHHHTCCCCTT-HHHHHHHHTTT-C
T ss_pred Hh-----cCCCEEEEEcCCCCccch-hhHh--c-eEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-c
Confidence 32 223345544443333443 3444 4 458999999999999999876643 444443 37889998887 5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Q 010809 437 GADLANLLNEAAILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 437 gadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~ 469 (500)
.+++.++++.++ . +...|+.+++.+++.
T Consensus 245 iR~~i~~L~~~~---~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 245 IRQVINLLSTIS---T--TTKTINHENINEISK 272 (516)
T ss_dssp HHHHHHHHTHHH---H--HSSCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHH---h--cCCCCchHHHHHHHH
Confidence 666666655443 2 335588777766655
No 45
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.82 E-value=6.2e-21 Score=201.90 Aligned_cols=169 Identities=24% Similarity=0.333 Sum_probs=82.6
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhhhhhhCCC-CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH-hhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEF-LKKPERFTAIGAR-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE-MFVGV 307 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~~~~~G~~-~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~-~~vG~ 307 (500)
++|+|++++|+.+...+.. ++.+..+..++.. .|+++||+||||||||++|+++|++++.+|+.++++.+.+ .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4799999999999888755 4555544444433 5689999999999999999999999999999999999988 58885
Q ss_pred -hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe-eCCCCCCchh
Q 010809 308 -GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA-TNRADILDSA 385 (500)
Q Consensus 308 -~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa-TN~~~~Ld~a 385 (500)
.++.++.+|+.+... +++||+|.+.... ......+++++|+.+||++.....+ +++ ||+++.||++
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~~------~~~~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~a 162 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRARA------EDVAEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKK 162 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhccc------hhhHHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHH
Confidence 788999999998765 4589998874332 2233468999999999999776554 455 9999999999
Q ss_pred hcCCCCcceEEEecCCCHH-HHHHHHH
Q 010809 386 LLRPGRFDRQVTVDVPDIR-GRTEILK 411 (500)
Q Consensus 386 LlrpgRfdr~I~v~~Pd~~-eR~~IL~ 411 (500)
|+||||||+.|++++|+.. .|.+|+.
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~ 189 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMA 189 (444)
T ss_dssp ---------------------------
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhc
Confidence 9999999999999999988 6777763
No 46
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.81 E-value=8.8e-19 Score=177.29 Aligned_cols=220 Identities=16% Similarity=0.231 Sum_probs=150.7
Q ss_pred CCCcCccccc-CCh--HHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 225 NTGVTFDDVA-GVD--EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 225 ~~~~~f~dv~-G~d--e~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.+..+|++++ |.. .+...+..+ +..+. ..+.+++|+||||||||++|+++++++ +.++++++++
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~---~~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEA---LENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHH---HHTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHH---HhCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3467899997 433 333333333 33321 235589999999999999999999988 8999999999
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
++...+.+.........|..... .+++|||||+|.+..+ ...++.+..++..+. .....+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~iDEi~~l~~~---------~~~~~~l~~~l~~~~---~~~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMYK-SVDLLLLDDVQFLSGK---------ERTQIEFFHIFNTLY---LLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH-TCSEEEEECGGGGTTC---------HHHHHHHHHHHHHHH---HTTCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHhc-CCCEEEEcCcccccCC---------hHHHHHHHHHHHHHH---HCCCeEEEEecCC
Confidence 98776655433222233333322 3789999999998421 233344444444332 2334566667666
Q ss_pred CC---CCchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHH--
Q 010809 379 AD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAIL-- 450 (500)
Q Consensus 379 ~~---~Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~-- 450 (500)
+. .+++++++ ||. ..+.+++ +.+++.+|++.++...++. ++..++.++..+ | +.+++.++++.+...
T Consensus 142 ~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~ 216 (324)
T 1l8q_A 142 PQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGF 216 (324)
T ss_dssp GGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCH
T ss_pred hHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCH
Confidence 65 68999998 886 5789999 9999999999988644332 223378889889 6 899999999988765
Q ss_pred -HHH-cCCCCc-CHHHHHHHHHHHH
Q 010809 451 -AGR-RGKAAI-SSKEIDDSIDRIV 472 (500)
Q Consensus 451 -A~r-~~~~~I-t~~d~~~Ai~~v~ 472 (500)
+.+ .+...| +.+++.+++....
T Consensus 217 ~~l~~~~~~~i~t~~~i~~~~~~~~ 241 (324)
T 1l8q_A 217 EGLERKERKERDKLMQIVEFVANYY 241 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccCCCCHHHHHHHHHHHh
Confidence 111 233458 8999999888753
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.80 E-value=4.3e-19 Score=169.41 Aligned_cols=207 Identities=13% Similarity=0.121 Sum_probs=142.0
Q ss_pred CCCcCcccccCCh---HHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 225 NTGVTFDDVAGVD---EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 225 ~~~~~f~dv~G~d---e~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.+..+|++++|.+ ++.+.+..++. .+ .+.+++|+||||||||++|++++.++ +.++++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAAS---GD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG 89 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHH---TC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHh---CC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 3457899999843 33333333332 11 24589999999999999999999876 4789999998
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCe-EEEEeeC
Q 010809 299 EFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGI-IVIAATN 377 (500)
Q Consensus 299 e~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~v-iVIaaTN 377 (500)
++...+... +.. ...+++|||||+|.+.. .....+.+..++.... ....+ +|+++++
T Consensus 90 ~~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~---------~~~~~~~l~~~l~~~~---~~~~~~ii~~~~~ 147 (242)
T 3bos_A 90 IHASISTAL--------LEG--LEQFDLICIDDVDAVAG---------HPLWEEAIFDLYNRVA---EQKRGSLIVSASA 147 (242)
T ss_dssp GGGGSCGGG--------GTT--GGGSSEEEEETGGGGTT---------CHHHHHHHHHHHHHHH---HHCSCEEEEEESS
T ss_pred HHHHHHHHH--------HHh--ccCCCEEEEeccccccC---------CHHHHHHHHHHHHHHH---HcCCCeEEEEcCC
Confidence 876543211 111 13467999999999832 1122344444444332 12334 4444444
Q ss_pred CCC---CCchhhcCCCCcc--eEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 378 RAD---ILDSALLRPGRFD--RQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 378 ~~~---~Ld~aLlrpgRfd--r~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
.++ .+++++.+ ||. ..+.++.|+.+++.++++.++...+.. ++..++.++..++| +.+++.++++.+...|
T Consensus 148 ~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 148 SPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKAS 224 (242)
T ss_dssp CTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 443 45688888 886 799999999999999999988644432 23346788889987 9999999999999888
Q ss_pred HHcCCCCcCHHHHHHHHH
Q 010809 452 GRRGKAAISSKEIDDSID 469 (500)
Q Consensus 452 ~r~~~~~It~~d~~~Ai~ 469 (500)
..++ ..||.+++++++.
T Consensus 225 ~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 225 MVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHT-CCCCHHHHHHHHT
T ss_pred HHhC-CCCcHHHHHHHhh
Confidence 6655 4599999998864
No 48
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.80 E-value=8.3e-19 Score=180.05 Aligned_cols=214 Identities=24% Similarity=0.332 Sum_probs=157.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----------CCCEEEEe
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----------GVPFFSIS 296 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----------~~pfi~is 296 (500)
...++++|.++..+++.+.+...... ..|++++|+||||||||++|+++++++ +.++++++
T Consensus 17 ~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 17 SVFKEIPFREDILRDAAIAIRYFVKN--------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp HHCSSCTTCHHHHHHHHHHHHHHHTT--------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 34589999999999999888654321 345689999999999999999999987 89999999
Q ss_pred chhhH-Hh------hh-----------hhh-hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHH-HHH
Q 010809 297 GSEFV-EM------FV-----------GVG-ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT-LNQ 356 (500)
Q Consensus 297 ~se~~-~~------~v-----------G~~-~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~-L~~ 356 (500)
|.+.. .. .. +.. ...+..++..+... +++|||||+|.+..... ... +..
T Consensus 89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~vlilDEi~~l~~~~~----------~~~~l~~ 157 (384)
T 2qby_B 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI-RAIIYLDEVDTLVKRRG----------GDIVLYQ 157 (384)
T ss_dssp HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS-CEEEEEETTHHHHHSTT----------SHHHHHH
T ss_pred CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC-CCEEEEECHHHhccCCC----------CceeHHH
Confidence 87643 11 11 111 12244444444333 34999999999954321 133 455
Q ss_pred HHHHhcCCCCCCCeEEEEeeCCC---CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC----CCCCccccHHHHH
Q 010809 357 LLTEMDGFEGNTGIIVIAATNRA---DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIA 429 (500)
Q Consensus 357 LL~emd~~~~~~~viVIaaTN~~---~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~la 429 (500)
|+... .++.+|++||.+ +.+++++++ ||...+.+++|+.++..++++.++.. ..+++ ..++.++
T Consensus 158 l~~~~------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~i~ 228 (384)
T 2qby_B 158 LLRSD------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD-EILSYIA 228 (384)
T ss_dssp HHTSS------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS-HHHHHHH
T ss_pred HhcCC------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH-HHHHHHH
Confidence 55432 578999999986 678999988 88779999999999999999988752 23333 2356666
Q ss_pred HhCC---CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 430 MRTP---GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 430 ~~t~---G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
..+. | +.+.+.++|+.|...|. +...|+.+++.+++++..
T Consensus 229 ~~~~~~~G-~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 229 AISAKEHG-DARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHTTCC-CHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHhccC-CHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 6665 6 78888899999998875 667899999999998764
No 49
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.80 E-value=2.4e-18 Score=162.68 Aligned_cols=208 Identities=20% Similarity=0.285 Sum_probs=151.0
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC--------
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------- 291 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p-------- 291 (500)
.+.++..+.+|++++|.++.++.+.+.+..- +.|..++|+||||+|||++|++++++....
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4555666778999999999999888877642 234479999999999999999999876432
Q ss_pred ----------------EEEEechhhHHhhhhhhhhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHH
Q 010809 292 ----------------FFSISGSEFVEMFVGVGASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDERE 351 (500)
Q Consensus 292 ----------------fi~is~se~~~~~vG~~~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~ 351 (500)
++.++... ......++.+++.+. ...+.+|+|||+|.+ +.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l-----------~~--- 140 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML-----------SR--- 140 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS-----------CH---
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccc-----------cH---
Confidence 22222211 012233455555442 234789999999998 22
Q ss_pred HHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHH
Q 010809 352 QTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAM 430 (500)
Q Consensus 352 ~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~ 430 (500)
..++.|+..++.. ..++++|++||.++.+++++++ |+ ..+.+++|+.++..++++.++...... ++..+..++.
T Consensus 141 ~~~~~l~~~l~~~--~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 141 HSFNALLKTLEEP--PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHHHHSC--CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2445556666532 4578899999998889999988 76 589999999999999999887654332 2334678888
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 431 RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 431 ~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.+.| +++++.++++.|... +...||.+++++++
T Consensus 216 ~~~G-~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 216 AAEG-SLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHTT-CHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HcCC-CHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 9988 899999999988643 33479999998875
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.80 E-value=4.4e-18 Score=172.69 Aligned_cols=223 Identities=19% Similarity=0.245 Sum_probs=143.1
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-------C------
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------P------ 291 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-------p------ 291 (500)
.++.+|++++|.+++++.+.... + .+ .+.++||+||||||||++|++++..++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~--~-~~---------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA--V-DP---------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH--H-CG---------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHh--h-CC---------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 35678999999999776543221 1 11 1236999999999999999999998762 2
Q ss_pred --------------------EEEEechhhHHhhhhhhhhHHHHHHHHH---------HhCCCeEEEEcCcchhhhccCCC
Q 010809 292 --------------------FFSISGSEFVEMFVGVGASRVRDLFKKA---------KENAPCIVFVDEIDAVGRQRGTG 342 (500)
Q Consensus 292 --------------------fi~is~se~~~~~vG~~~~~vr~lf~~a---------~~~~p~IIfIDEID~l~~~r~~~ 342 (500)
++.+..+.....+.|. ..+...+... ....+++|||||+|.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~--~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l------- 156 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGA--LDIERAISKGEKAFEPGLLARANRGYLYIDECNLL------- 156 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCE--ECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS-------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheee--chhhhhhcCCceeecCceeeecCCCEEEEeChhhC-------
Confidence 2222211111111221 0011122211 1113679999999998
Q ss_pred CCCCChHHHHHHHHHHHHh----cCCC----CCCCeEEEEeeCCCC-CCchhhcCCCCcceEEEecCC-CHHHHHHHHHH
Q 010809 343 IGGGNDEREQTLNQLLTEM----DGFE----GNTGIIVIAATNRAD-ILDSALLRPGRFDRQVTVDVP-DIRGRTEILKV 412 (500)
Q Consensus 343 ~~~~~~e~~~~L~~LL~em----d~~~----~~~~viVIaaTN~~~-~Ld~aLlrpgRfdr~I~v~~P-d~~eR~~IL~~ 412 (500)
..+.+..+.+++.+- .... .+.++++|++||..+ .++++|++ ||+..+.++.| +.+++.+|++.
T Consensus 157 ----~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 157 ----EDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ----CHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHH
Confidence 333444454544431 1000 123689999999755 89999999 99988999999 67777788865
Q ss_pred Hh-------------------------------cCCCCCccccHHHHHHhC---CCCcHHHHHHHHHHHHHHHHHcCCCC
Q 010809 413 HG-------------------------------SNKKFDADVSLDVIAMRT---PGFSGADLANLLNEAAILAGRRGKAA 458 (500)
Q Consensus 413 ~l-------------------------------~~~~l~~dvdl~~la~~t---~G~sgadL~~lv~eAa~~A~r~~~~~ 458 (500)
++ ....+++++ ++.++... ..-+.+.+.++++.|...|..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~-~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~ 309 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTA-LYDCAALCIALGSDGLRGELTLLRSARALAALEGATA 309 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHH-HHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSB
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCc
Confidence 31 112333222 33444332 22267999999999999999999999
Q ss_pred cCHHHHHHHHHHHHcCc
Q 010809 459 ISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 459 It~~d~~~Ai~~v~~g~ 475 (500)
|+.+|+.+|+..++...
T Consensus 310 v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 310 VGRDHLKRVATMALSHR 326 (350)
T ss_dssp CCHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999876553
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=1.3e-18 Score=176.50 Aligned_cols=215 Identities=20% Similarity=0.224 Sum_probs=152.8
Q ss_pred cccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC------C
Q 010809 217 KAKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG------V 290 (500)
Q Consensus 217 ~~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~------~ 290 (500)
....|.++..+.+|++++|.+++++.+...+.. . +.| +++|+||||||||++|+++|++++ .
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~---~--------~~~-~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS---A--------NLP-HMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC---T--------TCC-CEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc---C--------CCC-EEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 334577778889999999999999877766532 1 122 499999999999999999998753 4
Q ss_pred CEEEEechhhHHhhhhhhhhHHHHHHHHHH----------------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHH
Q 010809 291 PFFSISGSEFVEMFVGVGASRVRDLFKKAK----------------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTL 354 (500)
Q Consensus 291 pfi~is~se~~~~~vG~~~~~vr~lf~~a~----------------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L 354 (500)
.++.+++++... ...+++.+.... ...+.||||||+|.+. ...+
T Consensus 91 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~-----------~~~~--- 150 (353)
T 1sxj_D 91 RILELNASDERG------ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT-----------ADAQ--- 150 (353)
T ss_dssp SEEEECSSSCCC------HHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC-----------HHHH---
T ss_pred ceEEEccccccc------hHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC-----------HHHH---
Confidence 688888776321 111222221111 1245699999999983 2333
Q ss_pred HHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCC
Q 010809 355 NQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTP 433 (500)
Q Consensus 355 ~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~ 433 (500)
+.|+..++.. .....+|.+||.++.+++++++ |+. .+.+++|+.++..++++..+...+.. ++..++.++..+.
T Consensus 151 ~~Ll~~le~~--~~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 151 SALRRTMETY--SGVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp HHHHHHHHHT--TTTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred HHHHHHHHhc--CCCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 3444444432 3356777788999999999999 886 88999999999999999887554432 2334788888888
Q ss_pred CCcHHHHHHHHHHHHHHHHHcCCC-CcCHHHHHHHHH
Q 010809 434 GFSGADLANLLNEAAILAGRRGKA-AISSKEIDDSID 469 (500)
Q Consensus 434 G~sgadL~~lv~eAa~~A~r~~~~-~It~~d~~~Ai~ 469 (500)
| +.+.+.++++.++..+.+.+.. .|+.+++++++.
T Consensus 226 G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 226 G-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp S-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 8 7888889998888877655544 799999887654
No 52
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=2.3e-18 Score=174.53 Aligned_cols=218 Identities=17% Similarity=0.174 Sum_probs=151.2
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH--Hhhh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV--EMFV 305 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~--~~~v 305 (500)
..+++++|++++++.+...+.. +.++||+||||||||++|+++|+.++.+++.++++... ..+.
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~ 89 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLI 89 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHH
T ss_pred HhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcC
Confidence 3567899999999877765542 13799999999999999999999999999999884211 1122
Q ss_pred hhhhhH-HHHHHHHHHhCC---CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc----C--CCCCCCeEEEEe
Q 010809 306 GVGASR-VRDLFKKAKENA---PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G--FEGNTGIIVIAA 375 (500)
Q Consensus 306 G~~~~~-vr~lf~~a~~~~---p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd----~--~~~~~~viVIaa 375 (500)
|...-. ....|. .... .+||||||+|.+ +......+.+.+.+-. + +..+.++++|+|
T Consensus 90 g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~-----------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat 156 (331)
T 2r44_A 90 GTMIYNQHKGNFE--VKKGPVFSNFILADEVNRS-----------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLAT 156 (331)
T ss_dssp EEEEEETTTTEEE--EEECTTCSSEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEE
T ss_pred CceeecCCCCceE--eccCcccccEEEEEccccC-----------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEe
Confidence 211000 000000 0111 379999999997 3334444444444321 0 112446888999
Q ss_pred eCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCC------------------------CCccccHH
Q 010809 376 TNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKK------------------------FDADVSLD 426 (500)
Q Consensus 376 TN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~------------------------l~~dvdl~ 426 (500)
+|..+ .+++++++ ||+.++.++.|+.+++.+|++.++.... ++++ .++
T Consensus 157 ~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~-~~~ 233 (331)
T 2r44_A 157 QNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISES-LEK 233 (331)
T ss_dssp ECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHH-HHH
T ss_pred cCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHH-HHH
Confidence 98654 38999999 9998899999999999999998876432 1111 123
Q ss_pred HHHHh-------------------CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCc
Q 010809 427 VIAMR-------------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 427 ~la~~-------------------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~ 475 (500)
.++.. ..|.|++.+.++++.|...|..+++..|+.+|+.+++..++...
T Consensus 234 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r 301 (331)
T 2r44_A 234 YIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHR 301 (331)
T ss_dssp HHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhh
Confidence 33221 12568999999999999999999999999999999999887553
No 53
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.79 E-value=1e-17 Score=171.06 Aligned_cols=217 Identities=23% Similarity=0.337 Sum_probs=161.8
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+.-.+.+|++++|.+.+++.+...+...+.+ ...+.+++|+||||+|||+||+++|+++++++...+++.+..
T Consensus 17 ~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 3444568999999999888887776643221 134568999999999999999999999999998887754421
Q ss_pred hhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC----------------C
Q 010809 303 MFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE----------------G 366 (500)
Q Consensus 303 ~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~----------------~ 366 (500)
...+..++.. ...++|+||||+|.+.. ..++.+... ++.+. .
T Consensus 90 ------~~~l~~~~~~--~~~~~v~~iDE~~~l~~-----------~~~e~L~~~---~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 90 ------QGDMAAILTS--LERGDVLFIDEIHRLNK-----------AVEELLYSA---IEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp ------HHHHHHHHHH--CCTTCEEEEETGGGCCH-----------HHHHHHHHH---HHTSCCCC--------------
T ss_pred ------HHHHHHHHHH--ccCCCEEEEcchhhcCH-----------HHHHHHHHH---HHhcccceeeccCccccccccc
Confidence 1223333332 23457999999999832 233333333 22221 0
Q ss_pred CCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 367 NTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 367 ~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
-..+.++++|+++..|++.+++ ||...+.+++|+.+++.++++...+..... ++..+..++..+.| +++++.++++
T Consensus 148 l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~ 224 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTK 224 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 1246778899999999999999 998889999999999999999877644433 22347788999998 8899999999
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHH
Q 010809 446 EAAILAGRRGKAAISSKEIDDSIDRI 471 (500)
Q Consensus 446 eAa~~A~r~~~~~It~~d~~~Ai~~v 471 (500)
.+...|..++...||.+++++|++..
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 99999988888899999999999985
No 54
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=6.1e-18 Score=172.50 Aligned_cols=223 Identities=17% Similarity=0.259 Sum_probs=160.3
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCEEEEechhh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEF 300 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~------~~pfi~is~se~ 300 (500)
...+++++|.++..+.+.+.+..... ...+..++|+||||||||++++++++++ +.++++++|...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 45668999999998888776643211 1335589999999999999999999988 889999998754
Q ss_pred HH------hhh----------hhhh-hHHHHHHHHHHhC-CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 301 VE------MFV----------GVGA-SRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 301 ~~------~~v----------G~~~-~~vr~lf~~a~~~-~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
.. .+. +... .....+++..... .|++|+|||+|.+..... ...+..++..++
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~ 157 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------DDILYKLSRINS 157 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----------STHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----------CHHHHHHhhchh
Confidence 22 110 1111 2234444444433 389999999999964421 135666776665
Q ss_pred CCCCCCCeEEEEeeCCC---CCCchhhcCCCCcc-eEEEecCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHhCC-
Q 010809 363 GFEGNTGIIVIAATNRA---DILDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRTP- 433 (500)
Q Consensus 363 ~~~~~~~viVIaaTN~~---~~Ld~aLlrpgRfd-r~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~la~~t~- 433 (500)
.. ...++.+|++||.+ +.+++.+.+ ||. +.+.+++++.++..++++.++.. ..+. +..+..++..+.
T Consensus 158 ~~-~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 233 (386)
T 2qby_A 158 EV-NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAR 233 (386)
T ss_dssp SC-CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHH
T ss_pred hc-CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHH
Confidence 44 34578889999876 467788887 775 58999999999999999987642 2232 223556666665
Q ss_pred --CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 434 --GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 434 --G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
| +++.+.++|+.|+..|..++...|+.+++++|++...
T Consensus 234 ~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 234 EHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred hcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 7 7888889999999999888888999999999988764
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.77 E-value=2.5e-18 Score=171.61 Aligned_cols=206 Identities=23% Similarity=0.243 Sum_probs=149.7
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEE
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS 294 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~ 294 (500)
.|.++..+.+|++++|.+++++.+.+.+.. .+.| +++|+||||||||++|+++++++ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNIP-HLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCCC-CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCCC-eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 466777888999999999999877765532 1223 49999999999999999999986 456888
Q ss_pred EechhhHHhhhhhhhhHHHHHHHHHH------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010809 295 ISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (500)
Q Consensus 295 is~se~~~~~vG~~~~~vr~lf~~a~------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~ 368 (500)
+++++... ...+++.+.... ...+.+|+|||+|.+. . ...+.|+..++. ...
T Consensus 74 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~---~~~~~L~~~le~--~~~ 131 (319)
T 2chq_A 74 MNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT-----------A---DAQAALRRTMEM--YSK 131 (319)
T ss_dssp EETTSTTC------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC-----------H---HHHHTTGGGTSS--SSS
T ss_pred EeCccccC------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC-----------H---HHHHHHHHHHHh--cCC
Confidence 88876422 122223333221 1447899999999982 1 234556666664 245
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
++++|++||.++.+++++.+ |+. .+.+++|+.+++.+++..++...+.. ++..+..++..++| +.+.+.++++.+
T Consensus 132 ~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~ 207 (319)
T 2chq_A 132 SCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (319)
T ss_dssp SEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHH
T ss_pred CCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 68899999999999999999 886 89999999999999999888765543 23346778888887 777777777766
Q ss_pred HHHHHHcCCCCcCHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai 468 (500)
+.. ...|+.+++.+++
T Consensus 208 ~~~-----~~~i~~~~v~~~~ 223 (319)
T 2chq_A 208 AAI-----GEVVDADTIYQIT 223 (319)
T ss_dssp HHS-----SSCBCHHHHHHHT
T ss_pred HHc-----CCCCCHHHHHHHH
Confidence 532 2458877776543
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=3.7e-18 Score=176.49 Aligned_cols=238 Identities=20% Similarity=0.222 Sum_probs=145.2
Q ss_pred ccccCChHHHHHHHHHHHH-hcChhh--------------h---hhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCE
Q 010809 231 DDVAGVDEAKQDFMEVVEF-LKKPER--------------F---TAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~-l~~p~~--------------~---~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pf 292 (500)
++|+|++++|+.+...+.. ++.... - ..-....+.++||+||||||||++|+++|+.++.||
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3589999999999987732 111110 0 011234566899999999999999999999999999
Q ss_pred EEEechhhH-Hhhhhhh-hhHHHHHHHHHH----hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-
Q 010809 293 FSISGSEFV-EMFVGVG-ASRVRDLFKKAK----ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE- 365 (500)
Q Consensus 293 i~is~se~~-~~~vG~~-~~~vr~lf~~a~----~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~- 365 (500)
+.++++.+. ..++|.. ...+..++..+. ...++||||||+|.+...+.......+...+..++.|+..|++..
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 999998875 3455543 334555555432 235789999999999766433222222222335666777666431
Q ss_pred ------------------CCCCeEEEEeeCCC-----------------------------------------CCCchhh
Q 010809 366 ------------------GNTGIIVIAATNRA-----------------------------------------DILDSAL 386 (500)
Q Consensus 366 ------------------~~~~viVIaaTN~~-----------------------------------------~~Ld~aL 386 (500)
...++++|+++|.. ..+.+++
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 12457888887721 1245677
Q ss_pred cCCCCcceEEEecCCCHHHHHHHHHH-----------Hhc--CCCCC-ccccHHHHHHhCC--CCcHHHHHHHHHHHHHH
Q 010809 387 LRPGRFDRQVTVDVPDIRGRTEILKV-----------HGS--NKKFD-ADVSLDVIAMRTP--GFSGADLANLLNEAAIL 450 (500)
Q Consensus 387 lrpgRfdr~I~v~~Pd~~eR~~IL~~-----------~l~--~~~l~-~dvdl~~la~~t~--G~sgadL~~lv~eAa~~ 450 (500)
++ ||+..+.+++++.++..+|+.. .+. +..+. ++..+..++.... ..+.++|+++++.+...
T Consensus 261 ~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~ 338 (376)
T 1um8_A 261 IG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLD 338 (376)
T ss_dssp HT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHH
T ss_pred hc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHH
Confidence 77 9988999999999999998862 111 11111 1122455555522 23789999999998877
Q ss_pred HHHcCC------CCcCHHHHHHHHHH
Q 010809 451 AGRRGK------AAISSKEIDDSIDR 470 (500)
Q Consensus 451 A~r~~~------~~It~~d~~~Ai~~ 470 (500)
+..+.. ..||.++++++...
T Consensus 339 ~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 339 IMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 655422 25888888765443
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=4.2e-18 Score=191.63 Aligned_cols=223 Identities=22% Similarity=0.344 Sum_probs=162.0
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-+|++++|.++..+.+.+.+. . ..+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~---~---------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLC---R---------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHh---c---------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34589999999998887666543 1 234589999999999999999999876 6678888
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
+++.+. ..+.|....+++.+|+.+....++||||||+|.+.+.++.. .+ .....+.|.. +-....+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~---~~~~~~~L~~----~l~~~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GG---QVDAANLIKP----LLSSGKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SC---HHHHHHHHSS----CSSSCCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cc---hHHHHHHHHH----HHhCCCeEEE
Confidence 887776 35677778899999999988788999999999997654321 11 2222222222 2335678899
Q ss_pred EeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC------CCCCccccHHHHHHh-----CCCCcH
Q 010809 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN------KKFDADVSLDVIAMR-----TPGFSG 437 (500)
Q Consensus 374 aaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~------~~l~~dvdl~~la~~-----t~G~sg 437 (500)
++||.++ .+|++|.+ ||+ .+.++.|+.+++.+|++.+... ..+.++ .+..++.. ...+.+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~-al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAK-AVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHCTTSCTT
T ss_pred EEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHhhhhcccccCc
Confidence 9998643 57899999 998 7999999999999999876643 223322 24444443 334567
Q ss_pred HHHHHHHHHHHHHHHH----cCCCCcCHHHHHHHHHHHHc
Q 010809 438 ADLANLLNEAAILAGR----RGKAAISSKEIDDSIDRIVA 473 (500)
Q Consensus 438 adL~~lv~eAa~~A~r----~~~~~It~~d~~~Ai~~v~~ 473 (500)
.++.+++++|+..+.. .+...|+.+|+.+++.+...
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ 435 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIAR 435 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcC
Confidence 7888999999877655 34577999999999998653
No 58
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=1.5e-18 Score=158.86 Aligned_cols=160 Identities=24% Similarity=0.401 Sum_probs=117.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+.+|++++|.++..+++.+.+.. ..+.+++|+||||||||++|++++.++ +.+++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLAL 84 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEe
Confidence 345799999999887776665432 235589999999999999999999986 7899999
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+++++. ..+.+.....++.++..+. ...+++|||||+|.+...+.. .........+..++. ..++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~---~~~~~~~~~l~~~~~-------~~~~~~ 154 (195)
T 1jbk_A 85 DMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALA-------RGELHC 154 (195)
T ss_dssp CHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT---------CCCCHHHHHHHHH-------TTSCCE
T ss_pred eHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc---cchHHHHHHHHHhhc-------cCCeEE
Confidence 998876 3345555667778887664 355889999999999654321 111222344444443 346788
Q ss_pred EEeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHH
Q 010809 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEIL 410 (500)
Q Consensus 373 IaaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL 410 (500)
|++||.++ .+++++++ ||+ .+.++.|+.+++.+|+
T Consensus 155 i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 155 VGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred EEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 88888765 68999999 998 7999999999998875
No 59
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.76 E-value=3.2e-17 Score=168.04 Aligned_cols=220 Identities=15% Similarity=0.178 Sum_probs=159.6
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCc--eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhh
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK--GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF 300 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~--gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~ 300 (500)
...+++++|.++..+++.+.+...... ..+. +++|+||||||||++++++++++ +.++++++|+..
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 345589999999999998887653211 1233 79999999999999999999988 678999997653
Q ss_pred HH------hhh----------hhhhhH-HHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc
Q 010809 301 VE------MFV----------GVGASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD 362 (500)
Q Consensus 301 ~~------~~v----------G~~~~~-vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd 362 (500)
.. ... +..... ...+..... ...|.+|+|||+|.+ + ...++.|+..++
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-----------~---~~~~~~L~~~~~ 150 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-----------A---PDILSTFIRLGQ 150 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-----------C---HHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-----------c---hHHHHHHHHHHH
Confidence 21 111 111111 122222222 245889999999998 1 235566666655
Q ss_pred CCCC--CCCeEEEEeeCCC---CCCchhhcCCCCcce-EEEecCCCHHHHHHHHHHHhcC----CCCCccccHHHHHHhC
Q 010809 363 GFEG--NTGIIVIAATNRA---DILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSN----KKFDADVSLDVIAMRT 432 (500)
Q Consensus 363 ~~~~--~~~viVIaaTN~~---~~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~l~~----~~l~~dvdl~~la~~t 432 (500)
.+.. ..++.+|++||.+ +.+++.+.+ ||.. .+.+++++.++..++++..+.. ..+ ++..++.++..+
T Consensus 151 ~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~ 227 (389)
T 1fnn_A 151 EADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY-SEDILQMIADIT 227 (389)
T ss_dssp CHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHH
T ss_pred hCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHH
Confidence 4322 1478899999987 577888877 8875 8999999999999999887753 222 233467777777
Q ss_pred ---------CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 433 ---------PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 433 ---------~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
+| +++.+.++|+.|+..|..++...|+.+++.++++...
T Consensus 228 ~~~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 228 GAQTPLDTNRG-DARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp SBSSTTCTTSC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred hhcccCCCCCC-cHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 66 8899999999999999988889999999999998764
No 60
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=4.1e-17 Score=163.32 Aligned_cols=205 Identities=22% Similarity=0.268 Sum_probs=145.0
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFF 293 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi 293 (500)
..|.++..+.+|++++|++++++.+...+..- +.| +++|+||||||||++|+++++++. .+++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~-~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------SMP-HLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------CCC-EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------CCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 34667778889999999999999888777532 122 599999999999999999999863 3578
Q ss_pred EEechhhHHhhhhhhhhHHHHHHHHHH------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 294 SISGSEFVEMFVGVGASRVRDLFKKAK------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~lf~~a~------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
.+++++.... ..++..+.... ...+++|+|||+|.+. .+. .+.|+..++. ..
T Consensus 81 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~-----------~~~---~~~L~~~le~--~~ 138 (327)
T 1iqp_A 81 ELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADALT-----------QDA---QQALRRTMEM--FS 138 (327)
T ss_dssp EEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC-----------HHH---HHHHHHHHHH--TT
T ss_pred EeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC-----------HHH---HHHHHHHHHh--cC
Confidence 8887664321 12222222211 1457899999999982 223 3445555543 24
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNE 446 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~e 446 (500)
.++++|+++|.++.+.+++.+ |+. .+.+++|+.++..++++..+...+.. ++..++.++..+.| +.+.+.++++.
T Consensus 139 ~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 214 (327)
T 1iqp_A 139 SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQA 214 (327)
T ss_dssp TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 567888899999999999998 886 88999999999999999887655543 23346778888887 78888888876
Q ss_pred HHHHHHHcCCCCcCHHHHHH
Q 010809 447 AAILAGRRGKAAISSKEIDD 466 (500)
Q Consensus 447 Aa~~A~r~~~~~It~~d~~~ 466 (500)
++.. ...|+.+++.+
T Consensus 215 ~~~~-----~~~i~~~~v~~ 229 (327)
T 1iqp_A 215 AAAL-----DKKITDENVFM 229 (327)
T ss_dssp HHTT-----CSEECHHHHHH
T ss_pred HHhc-----CCCCCHHHHHH
Confidence 6532 22455555543
No 61
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=3.2e-17 Score=163.80 Aligned_cols=206 Identities=17% Similarity=0.188 Sum_probs=149.3
Q ss_pred cccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEE
Q 010809 221 QMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (500)
Q Consensus 221 ~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~i 295 (500)
+.++..+.+|++++|.+++++.+.+.+.. .+.|. ++|+||||+|||++|+++++++ +.+++++
T Consensus 11 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 78 (323)
T 1sxj_B 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 78 (323)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred HHHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEe
Confidence 45566778999999999999988887642 12344 9999999999999999999985 4568888
Q ss_pred echhhHHhhhhhhhhHHHHHHHHHH-------hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010809 296 SGSEFVEMFVGVGASRVRDLFKKAK-------ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNT 368 (500)
Q Consensus 296 s~se~~~~~vG~~~~~vr~lf~~a~-------~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~ 368 (500)
++++.. +...++++++... ...+++|+|||+|.+. .+. .+.|+..++. ...
T Consensus 79 ~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~---~~~L~~~le~--~~~ 136 (323)
T 1sxj_B 79 NASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT-----------AGA---QQALRRTMEL--YSN 136 (323)
T ss_dssp CTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC-----------HHH---HHTTHHHHHH--TTT
T ss_pred cCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEECcccCC-----------HHH---HHHHHHHHhc--cCC
Confidence 876531 2234555555543 2347899999999982 222 3344444442 245
Q ss_pred CeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 369 GIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 369 ~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
++++|.+||.++.+.+++.+ |+. .+.+++|+.++..++++.++...+.. ++..+..++..+.| +.+.+.++++.+
T Consensus 137 ~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~ 212 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQST 212 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 67888889999999999998 885 89999999999999999877543332 23346778888887 777777777766
Q ss_pred HHHHHHcCCCCcCHHHHHHHHH
Q 010809 448 AILAGRRGKAAISSKEIDDSID 469 (500)
Q Consensus 448 a~~A~r~~~~~It~~d~~~Ai~ 469 (500)
+... ..|+.+++.+++.
T Consensus 213 ~~~~-----~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 213 VAGH-----GLVNADNVFKIVD 229 (323)
T ss_dssp HHHH-----SSBCHHHHHHHHT
T ss_pred HhcC-----CCcCHHHHHHHHC
Confidence 5321 4588888877654
No 62
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.74 E-value=3.8e-18 Score=173.62 Aligned_cols=215 Identities=9% Similarity=0.096 Sum_probs=146.9
Q ss_pred ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEEechhhHH
Q 010809 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSISGSEFVE 302 (500)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~is~se~~~ 302 (500)
+.|.++..+++...+... +....|.+++|+||||||||++++++++++ .+.+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~--------i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS--------LMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH--------HHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 566666666666555442 122357799999999999999999999987 35688999865432
Q ss_pred ----------hhhh------hhhhHHHHHHHHH--HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC
Q 010809 303 ----------MFVG------VGASRVRDLFKKA--KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF 364 (500)
Q Consensus 303 ----------~~vG------~~~~~vr~lf~~a--~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~ 364 (500)
.+.| .....++.+|... ....++||+|||+|.+. .++.|..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------------~q~~L~~l~~~~~-- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------------SEKILQYFEKWIS-- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------------CTHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------------cchHHHHHHhccc--
Confidence 2222 2345677788765 34568999999999994 1356777776543
Q ss_pred CCCCCeEEEEeeCCCCC----CchhhcCCCCcc-eEEEecCCCHHHHHHHHHHHhcCCCCC-------------------
Q 010809 365 EGNTGIIVIAATNRADI----LDSALLRPGRFD-RQVTVDVPDIRGRTEILKVHGSNKKFD------------------- 420 (500)
Q Consensus 365 ~~~~~viVIaaTN~~~~----Ld~aLlrpgRfd-r~I~v~~Pd~~eR~~IL~~~l~~~~l~------------------- 420 (500)
..+.+++||+++|..+. |++++++ ||. +.+.|++++.++..+|++.++....-.
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~ 236 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIRE 236 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 23567999999998765 4455566 886 589999999999999999887653210
Q ss_pred -----------------ccccHHHHHHh---CCCCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHH
Q 010809 421 -----------------ADVSLDVIAMR---TPGFSGADLANLLNEAAILAGRR---------GKAAISSKEIDDSIDRI 471 (500)
Q Consensus 421 -----------------~dvdl~~la~~---t~G~sgadL~~lv~eAa~~A~r~---------~~~~It~~d~~~Ai~~v 471 (500)
.+.-++.+|+. ..| ..+..-++|+.|...|.++ ++..||.+.+.+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~~ 315 (318)
T 3te6_A 237 GQNQKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSEA 315 (318)
T ss_dssp ------CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHHH
T ss_pred cccccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHHH
Confidence 12225555653 445 5666678888999888653 33456666666666655
Q ss_pred Hc
Q 010809 472 VA 473 (500)
Q Consensus 472 ~~ 473 (500)
+.
T Consensus 316 ~~ 317 (318)
T 3te6_A 316 IN 317 (318)
T ss_dssp HC
T ss_pred hc
Confidence 43
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=1e-16 Score=163.85 Aligned_cols=206 Identities=19% Similarity=0.278 Sum_probs=150.4
Q ss_pred ccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC----------
Q 010809 222 MEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---------- 291 (500)
Q Consensus 222 ~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---------- 291 (500)
.++..+.+|++++|.+++++.+.+.+..- +.|..++|+||||||||++|+++|+.++..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34556778999999999999888877532 234578999999999999999999987542
Q ss_pred --------------EEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 292 --------------FFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 292 --------------fi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
++.++++. ..+...++++++.+.. ..+.||+|||+|.+. . ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~-----------~---~~ 135 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS-----------R---HS 135 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC-----------H---HH
T ss_pred cHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc-----------H---HH
Confidence 22222211 1123456777777642 346899999999982 2 34
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-ccccHHHHHHhC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-ADVSLDVIAMRT 432 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-~dvdl~~la~~t 432 (500)
++.|+..++. ...++++|++|+.+..+.+.+++ |+ ..+.+++|+.++..++++.+++..+.. ++..+..++..+
T Consensus 136 ~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 136 FNALLKTLEE--PPEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp HHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred HHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 5566666664 34578889999988889999998 87 589999999999999999887654433 222367788899
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 433 PGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 433 ~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.| +.+++.++++.+...+ ...|+.+++++++
T Consensus 211 ~G-~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp SS-CHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred CC-CHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 88 8899999998876443 3458888776553
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2.8e-17 Score=164.25 Aligned_cols=206 Identities=20% Similarity=0.273 Sum_probs=137.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-----
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----- 302 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~----- 302 (500)
++++|++++++.+...+......-. ...++..+++|+||||||||++|+++|+.+ +.+++.++|+.+.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 4688999999999988876421100 001223479999999999999999999987 67899999987643
Q ss_pred hhhhh-----hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC------CCCCeE
Q 010809 303 MFVGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNTGII 371 (500)
Q Consensus 303 ~~vG~-----~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~------~~~~vi 371 (500)
.+.|. +......+.........++|||||+|.+ +.+....+.+++.+-.-.. .-.+++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l-----------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA-----------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc-----------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 22221 1110112333334455689999999998 3344444444444321100 013678
Q ss_pred EEEeeCC--------------------------CCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC-------C
Q 010809 372 VIAATNR--------------------------ADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------K 418 (500)
Q Consensus 372 VIaaTN~--------------------------~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~-------~ 418 (500)
+|+|||. ...+++++++ ||+..+.+++|+.+++.+|++.++... .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999998 4467888988 999999999999999999999876542 1
Q ss_pred CC---ccccHHHHHHhCC--CCcHHHHHHHHHHHHHHHH
Q 010809 419 FD---ADVSLDVIAMRTP--GFSGADLANLLNEAAILAG 452 (500)
Q Consensus 419 l~---~dvdl~~la~~t~--G~sgadL~~lv~eAa~~A~ 452 (500)
.. .+..++.++...- ..+.++|+++++.+...+.
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~ 279 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 279 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHH
Confidence 11 1222555665432 3489999999998877553
No 65
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.73 E-value=1.3e-17 Score=178.01 Aligned_cols=208 Identities=22% Similarity=0.345 Sum_probs=142.4
Q ss_pred CCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEE
Q 010809 224 PNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFF 293 (500)
Q Consensus 224 ~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi 293 (500)
...+-+|++|+|.++.++.+.+++.. ..+.++||+||||||||++|+++|..+ +.+|+
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 34556899999999999887776643 123479999999999999999999986 78899
Q ss_pred EEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 294 SISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
.++++ ..+.|....+++.+|..+....++||||| + . ....+.|+..++ ...+.+|
T Consensus 241 ~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~----------~---~~a~~~L~~~L~----~g~v~vI 295 (468)
T 3pxg_A 241 TLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------A---IDASNILKPSLA----RGELQCI 295 (468)
T ss_dssp CC-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEE
T ss_pred EeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----C----------c---hhHHHHHHHhhc----CCCEEEE
Confidence 99988 66778888899999999998889999999 1 0 012333444343 4578999
Q ss_pred EeeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC----CCC-ccccHHHHHHhC-----CCCcHH
Q 010809 374 AATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK----KFD-ADVSLDVIAMRT-----PGFSGA 438 (500)
Q Consensus 374 aaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~----~l~-~dvdl~~la~~t-----~G~sga 438 (500)
++||.++ .+|+++++ ||+ .+.|+.|+.+++.+||+.++... ... .+..+..++..+ ..+.+.
T Consensus 296 ~at~~~e~~~~~~~~~al~~--Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~ 372 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPD 372 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTH
T ss_pred ecCCHHHHHHHhhcCHHHHH--hCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCc
Confidence 9999987 68999999 997 69999999999999999887653 221 222244444433 234466
Q ss_pred HHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHHH
Q 010809 439 DLANLLNEAAILAGRRGK-AAISSKEIDDSIDRI 471 (500)
Q Consensus 439 dL~~lv~eAa~~A~r~~~-~~It~~d~~~Ai~~v 471 (500)
+..+++.+|+..+..+.. ..-+..+++..++++
T Consensus 373 ~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 788889888876655443 233445555555543
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=1.6e-16 Score=181.26 Aligned_cols=204 Identities=23% Similarity=0.314 Sum_probs=136.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+-+|++++|.++..+.+.+++.. +.+.+++|+||||||||++|+++|.++ +.+++++
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l 232 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSL 232 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEe
Confidence 456899999999877776665531 224479999999999999999999987 8899999
Q ss_pred echhhH--HhhhhhhhhHHHHHHHHHHhC-CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFV--EMFVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~--~~~vG~~~~~vr~lf~~a~~~-~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+++.+. ..+.|....+++.+|..+... .|+||||||+|.+.+.+.. .+..+....+..++. ...+.+
T Consensus 233 ~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~---~g~~~~~~~L~~~l~-------~~~i~~ 302 (854)
T 1qvr_A 233 QMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKA---EGAVDAGNMLKPALA-------RGELRL 302 (854)
T ss_dssp CC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH-------TTCCCE
T ss_pred ehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCc---cchHHHHHHHHHHHh-------CCCeEE
Confidence 999887 467788888999999999765 6899999999999655422 112223334444443 356789
Q ss_pred EEeeCCCC----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC------CCCccccHHHHHHh-----CCCCcH
Q 010809 373 IAATNRAD----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK------KFDADVSLDVIAMR-----TPGFSG 437 (500)
Q Consensus 373 IaaTN~~~----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~------~l~~dvdl~~la~~-----t~G~sg 437 (500)
|++||.++ .+|+++.+ ||+. +.++.|+.+++.+|++.++... .+.+ ..+..++.. +..|.+
T Consensus 303 I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~-~al~~~~~ls~r~i~~~~lp 378 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISD-SAIIAAATLSHRYITERRLP 378 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECH-HHHHHHHHHHHHHCCSSCTH
T ss_pred EEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCH-HHHHHHHHHHhhhcccccCh
Confidence 99998764 47999999 9985 9999999999999998766422 2222 223444442 456778
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 010809 438 ADLANLLNEAAILAGRRG 455 (500)
Q Consensus 438 adL~~lv~eAa~~A~r~~ 455 (500)
.....++.+|+..+..+.
T Consensus 379 ~kai~lldea~a~~~~~~ 396 (854)
T 1qvr_A 379 DKAIDLIDEAAARLRMAL 396 (854)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 889999999988776543
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.70 E-value=1.3e-16 Score=156.70 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=124.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhHHhh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFVEMF 304 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~~~~ 304 (500)
.+|++++|.+++.+.+.+.+..+.. .+.++||+||||||||++|++++.... .||++++|+++.+..
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 5799999999999998887776432 234799999999999999999999874 799999999874322
Q ss_pred -----hhhhhh-------HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcC------CCC
Q 010809 305 -----VGVGAS-------RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDG------FEG 366 (500)
Q Consensus 305 -----vG~~~~-------~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~------~~~ 366 (500)
.|.... .....+..+ ..++|||||+|.+ +.+.+..+.+++..-.- ...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~ 138 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATA-----------PMMVQEKLLRVIEYGELERVGGSQPL 138 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGS-----------CHHHHHHHHHHHHHCEECCCCC--CE
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhc-----------CHHHHHHHHHHHHhCCeecCCCcccc
Confidence 111000 011223332 3579999999998 33445555555553210 011
Q ss_pred CCCeEEEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHH----HHHHHHh----cCCCCC-----ccccHH
Q 010809 367 NTGIIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRT----EILKVHG----SNKKFD-----ADVSLD 426 (500)
Q Consensus 367 ~~~viVIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~----~IL~~~l----~~~~l~-----~dvdl~ 426 (500)
..++.+|++||.+ ..++++|++ ||+. +.+..|+.++|. .+++.++ ...... .+..++
T Consensus 139 ~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 139 QVNVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp ECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred cCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 2467899999974 246788888 8863 456666665543 3333332 212211 112244
Q ss_pred HHH-HhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHH
Q 010809 427 VIA-MRTPGFSGADLANLLNEAAILAGRRGKAAISSKEI 464 (500)
Q Consensus 427 ~la-~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~ 464 (500)
.+. ..++| +.++|+++++.++..+ ....|+.+|+
T Consensus 216 ~L~~~~~~g-n~reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPG-NIRELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTT-HHHHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred HHHhCCCCC-CHHHHHHHHHHHHHhC---CCCcCcHHHc
Confidence 454 34676 8999999999998766 2345666554
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=1e-16 Score=180.46 Aligned_cols=191 Identities=23% Similarity=0.335 Sum_probs=136.3
Q ss_pred CCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEE
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFS 294 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~ 294 (500)
..+-+|++++|.++.++.+.+++.. +.+.++||+||||||||++|+++|..+ +.+++.
T Consensus 174 ~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred HhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 4456899999999999988776642 224479999999999999999999986 888998
Q ss_pred EechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEE
Q 010809 295 ISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIA 374 (500)
Q Consensus 295 is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIa 374 (500)
+++ ...|.|..+.+++.+|..+....|+||||| + . ....+.|+..++ ...+.+|+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~----------~---~~~~~~L~~~l~----~~~v~~I~ 296 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID-----A----------A---IDASNILKPSLA----RGELQCIG 296 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC-----C---------------------CCCTT----SSSCEEEE
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----C----------c---hhHHHHHHHHHh----cCCEEEEe
Confidence 887 556788888999999999998889999999 1 0 112344444443 55789999
Q ss_pred eeCCCC-----CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCC-----ccccHHHHHHh-----CCCCcHHH
Q 010809 375 ATNRAD-----ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFD-----ADVSLDVIAMR-----TPGFSGAD 439 (500)
Q Consensus 375 aTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~-----~dvdl~~la~~-----t~G~sgad 439 (500)
+||..+ .+|++++| ||+ .+.++.|+.+++.+||+.++...... .+..+..++.. +.++.+.+
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ 373 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDK 373 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHH
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcH
Confidence 999988 69999999 995 69999999999999999877653211 11223333332 45677888
Q ss_pred HHHHHHHHHHHHHHcC
Q 010809 440 LANLLNEAAILAGRRG 455 (500)
Q Consensus 440 L~~lv~eAa~~A~r~~ 455 (500)
...++.+|+..+..+.
T Consensus 374 ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 374 AIDLIDEAGSKVRLRS 389 (758)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8899999887665543
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.69 E-value=3e-16 Score=176.70 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=138.2
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCc-eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPK-GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVG 306 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~-gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG 306 (500)
++|+|++++++.+.+.+........ ....|. ++||+||||||||++|+++|..+ +.||++++|+++.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~----~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK----DPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS----CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC----CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 5799999999999988876432110 011233 69999999999999999999987 789999999999876654
Q ss_pred hhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC------CCCCCeEEEEeeCCCC
Q 010809 307 VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGNTGIIVIAATNRAD 380 (500)
Q Consensus 307 ~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~------~~~~~viVIaaTN~~~ 380 (500)
. ...+....+...++||||||||.+ +.+....|.+++.+-.-. ....++++|+|||.+.
T Consensus 567 ~----~~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 567 S----GGQLTEKVRRKPYSVVLLDAIEKA-----------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp C-------CHHHHHHCSSSEEEEECGGGS-----------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred c----cchhhHHHHhCCCeEEEEeCcccc-----------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 4 122334445566789999999988 444555555555542100 1234689999999754
Q ss_pred C------------CchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC-------CCCccc---cHHHHHHh--CCCCc
Q 010809 381 I------------LDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK-------KFDADV---SLDVIAMR--TPGFS 436 (500)
Q Consensus 381 ~------------Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~-------~l~~dv---dl~~la~~--t~G~s 436 (500)
. +.+++++ ||+..+.+++|+.+++.+|++.++... .....+ .++.++.. ...++
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 709 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYG 709 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCC
Confidence 3 7788888 999999999999999999998776432 111122 24555543 22347
Q ss_pred HHHHHHHHHHHHHHH
Q 010809 437 GADLANLLNEAAILA 451 (500)
Q Consensus 437 gadL~~lv~eAa~~A 451 (500)
.++|+++++.+...+
T Consensus 710 ~R~L~~~i~~~v~~~ 724 (758)
T 3pxi_A 710 ARPLRRAIQKHVEDR 724 (758)
T ss_dssp TTTHHHHHHHHTHHH
T ss_pred ChHHHHHHHHHHHHH
Confidence 899999998765443
No 70
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.69 E-value=6.1e-17 Score=148.08 Aligned_cols=153 Identities=25% Similarity=0.434 Sum_probs=111.1
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----------CCCEEEE
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSI 295 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----------~~pfi~i 295 (500)
.+.+|++++|.++..+.+.+.+. . ..+.+++|+||||||||++|++++.++ +.+++++
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILS---R---------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHT---S---------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHHh---C---------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 35579999999987776665542 2 224589999999999999999999986 7899999
Q ss_pred echhhHHh--hhhhhhhHHHHHHHHHHhC-CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEE
Q 010809 296 SGSEFVEM--FVGVGASRVRDLFKKAKEN-APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIV 372 (500)
Q Consensus 296 s~se~~~~--~vG~~~~~vr~lf~~a~~~-~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viV 372 (500)
+++.+... +.+.....++.++..+... .|++|||||+|.+...+.. .....+..+.+..++. ...+++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~~~~~~l~~~~~-------~~~~~i 155 (187)
T 2p65_A 85 DLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAV--AEGALDAGNILKPMLA-------RGELRC 155 (187)
T ss_dssp CHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSS--CTTSCCTHHHHHHHHH-------TTCSCE
T ss_pred eHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccc--cccchHHHHHHHHHHh-------cCCeeE
Confidence 98877632 3455556677788777654 6789999999999654431 0111222333433332 356789
Q ss_pred EEeeCCCC-----CCchhhcCCCCcceEEEecCCC
Q 010809 373 IAATNRAD-----ILDSALLRPGRFDRQVTVDVPD 402 (500)
Q Consensus 373 IaaTN~~~-----~Ld~aLlrpgRfdr~I~v~~Pd 402 (500)
|+++|.++ .+++++++ ||+ .+.++.|+
T Consensus 156 i~~~~~~~~~~~~~~~~~l~~--R~~-~i~i~~p~ 187 (187)
T 2p65_A 156 IGATTVSEYRQFIEKDKALER--RFQ-QILVEQPS 187 (187)
T ss_dssp EEEECHHHHHHHTTTCHHHHH--HEE-EEECCSCC
T ss_pred EEecCHHHHHHHHhccHHHHH--hcC-cccCCCCC
Confidence 99998765 68999999 998 59999886
No 71
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=3.3e-16 Score=159.67 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=145.4
Q ss_pred cccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC-----CEE
Q 010809 219 KFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-----PFF 293 (500)
Q Consensus 219 ~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~-----pfi 293 (500)
..|.++..+.+|++++|++++++.|...+.. .+.| +++|+||||||||++|+++|+.+.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~-----------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE-----------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT-----------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 4577778889999999999999888777652 1234 3999999999999999999998632 366
Q ss_pred EEechhhHHhhhhhhhhHHHHHHHHHHh------CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC
Q 010809 294 SISGSEFVEMFVGVGASRVRDLFKKAKE------NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN 367 (500)
Q Consensus 294 ~is~se~~~~~vG~~~~~vr~lf~~a~~------~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~ 367 (500)
.+++++.. +...+++.+..... ..+.|++|||+|.+. ... .+.|+..++.. .
T Consensus 81 ~~~~~~~~------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~-----------~~~---~~~L~~~le~~--~ 138 (340)
T 1sxj_C 81 ELNASDDR------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT-----------NAA---QNALRRVIERY--T 138 (340)
T ss_dssp EECTTSCC------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC-----------HHH---HHHHHHHHHHT--T
T ss_pred EEcCcccc------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC-----------HHH---HHHHHHHHhcC--C
Confidence 66665421 12334444433321 236899999999982 223 34455555532 3
Q ss_pred CCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC--CCCCccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 368 TGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN--KKFDADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 368 ~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~--~~l~~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
....+|.+||.+..+.+++++ |+. .+.++.++.++..+++...+.. ..+.+ .....++..+.| +.+.+.++++
T Consensus 139 ~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~-~~~~~i~~~s~G-~~r~~~~~l~ 213 (340)
T 1sxj_C 139 KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSP-NAEKALIELSNG-DMRRVLNVLQ 213 (340)
T ss_dssp TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCH-HHHHHHHHHHTT-CHHHHHHHTT
T ss_pred CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHH
Confidence 456788889999999999999 886 7899999999998988887743 33433 346677877777 6666666666
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHH
Q 010809 446 EAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 446 eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
.++..+.+.+...|+.+++.+++
T Consensus 214 ~~~~~~~~~~~~~it~~~v~~~~ 236 (340)
T 1sxj_C 214 SCKATLDNPDEDEISDDVIYECC 236 (340)
T ss_dssp TTTTTTCSSSCCCBCHHHHHHHT
T ss_pred HHHHhcCCcccccccHHHHHHHh
Confidence 55443322233468888776543
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.68 E-value=3e-16 Score=176.52 Aligned_cols=201 Identities=16% Similarity=0.230 Sum_probs=137.9
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh-------
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM------- 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~------- 303 (500)
++|+|++++++.+...+......-. ...++..++||+||||||||++|+++|..++.+|+.++|+++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~---~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLG---HEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCS---CTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccC---CCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4689999999998887765321100 001223479999999999999999999999999999999998763
Q ss_pred -----hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC------CCCCeEE
Q 010809 304 -----FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE------GNTGIIV 372 (500)
Q Consensus 304 -----~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~------~~~~viV 372 (500)
|+|.... ..+....+...++||||||||.+ +.+....|.+++.+-.-.. .-.++++
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~-----------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~i 601 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKA-----------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVL 601 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGS-----------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcccc-----------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEE
Confidence 3443222 22344455566799999999987 3344444444444211000 0145889
Q ss_pred EEeeCCCC-------------------------CCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC----------
Q 010809 373 IAATNRAD-------------------------ILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---------- 417 (500)
Q Consensus 373 IaaTN~~~-------------------------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~---------- 417 (500)
|+|||... .+++++++ ||+..+.+++|+.+++..|++.++...
T Consensus 602 I~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 602 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 99999754 57788888 999999999999999999999877522
Q ss_pred -CCCccccHHHHHHh-CC-CCcHHHHHHHHHHHHHH
Q 010809 418 -KFDADVSLDVIAMR-TP-GFSGADLANLLNEAAIL 450 (500)
Q Consensus 418 -~l~~dvdl~~la~~-t~-G~sgadL~~lv~eAa~~ 450 (500)
.+++ ..++.++.. ++ .+..+++.++++.+...
T Consensus 680 ~~~~~-~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 680 LEVSQ-EARNWLAEKGYDRAMGARPMARVIQDNLKK 714 (758)
T ss_dssp EEECH-HHHHHHHHHHCBTTTBTTTHHHHHHHHHTH
T ss_pred EEeCH-HHHHHHHHhCCCcCCCchHHHHHHHHHHHH
Confidence 1222 224555543 33 34578899998877754
No 73
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.67 E-value=7.7e-17 Score=162.80 Aligned_cols=205 Identities=24% Similarity=0.366 Sum_probs=131.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh---
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF--- 304 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~--- 304 (500)
++++|.+.+.+++.+.+..... .+.++||+||||||||++|++++... +.||+.++|+.+.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 4689999999999888876532 23479999999999999999999854 6899999998765422
Q ss_pred --hhhh------h-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC------CCCCC
Q 010809 305 --VGVG------A-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF------EGNTG 369 (500)
Q Consensus 305 --vG~~------~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~------~~~~~ 369 (500)
.|.. + ......|+.+. .++|||||||.+ ....+..+..++.+..-. ....+
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~ 137 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDI-----------SPLMQVRLLRAIQEREVQRVGSNQTISVD 137 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTC-----------CHHHHHHHHHHHHSSBCCBTTBCCCCBCC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccC-----------CHHHHHHHHHHHhcCEeeecCCcccccCC
Confidence 1110 0 11234455553 369999999998 233344444444432100 01245
Q ss_pred eEEEEeeCCC-------CCCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhcC----C-----CCCccccHHHHH
Q 010809 370 IIVIAATNRA-------DILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGSN----K-----KFDADVSLDVIA 429 (500)
Q Consensus 370 viVIaaTN~~-------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~~----~-----~l~~dvdl~~la 429 (500)
+.||++||.. ..++++|.. ||. .+.+..|+.++|.+ +++.++.. . .++++ .+..+.
T Consensus 138 ~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~-a~~~L~ 213 (304)
T 1ojl_A 138 VRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQ-AMDLLI 213 (304)
T ss_dssp CEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHH-HHHHHH
T ss_pred eEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHH-HHHHHH
Confidence 8999999975 135566666 775 56666777665543 44443321 1 22222 244455
Q ss_pred Hh-CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHH
Q 010809 430 MR-TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDS 467 (500)
Q Consensus 430 ~~-t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~A 467 (500)
.. |+| +.++|.++++.|+..+ ....|+.+|+...
T Consensus 214 ~~~wpG-nvReL~~~l~~~~~~~---~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 214 HYDWPG-NIRELENAIERAVVLL---TGEYISERELPLA 248 (304)
T ss_dssp HCCCSS-HHHHHHHHHHHHHHHC---CSSSBCGGGSCGG
T ss_pred cCCCCC-CHHHHHHHHHHHHHhC---CCCcccHHhhhhh
Confidence 44 587 9999999999998765 3456777776543
No 74
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=5.4e-16 Score=157.88 Aligned_cols=197 Identities=16% Similarity=0.208 Sum_probs=136.1
Q ss_pred ccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC---------
Q 010809 220 FQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--------- 290 (500)
Q Consensus 220 ~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~--------- 290 (500)
.|.+++.+.+|++++|++++++.+...+. + ..+.|. ++|+||+|+|||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~--~--------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD--Q--------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT--C--------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh--h--------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 47788889999999999999887766541 1 123444 999999999999999999996411
Q ss_pred --------------------CEEEEechhhHHhhhhhhhhHHHHHHHHHH--------------hCCCeEEEEcCcchhh
Q 010809 291 --------------------PFFSISGSEFVEMFVGVGASRVRDLFKKAK--------------ENAPCIVFVDEIDAVG 336 (500)
Q Consensus 291 --------------------pfi~is~se~~~~~vG~~~~~vr~lf~~a~--------------~~~p~IIfIDEID~l~ 336 (500)
+++.+++++... .....+++.++.+. ...|.||+|||+|.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-
Confidence 233333322110 00013455555442 225779999999997
Q ss_pred hccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcC
Q 010809 337 RQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSN 416 (500)
Q Consensus 337 ~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~ 416 (500)
+.+..+ .|+..++.. ..+..+|.+||.++.+.+++++ |+ ..+.+++|+.++..++++..+..
T Consensus 147 ----------~~~~~~---~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 147 ----------TKDAQA---ALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp ----------CHHHHH---HHHHHHHHS--TTTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred ----------CHHHHH---HHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 233334 444444432 3457888899999999999999 88 68999999999999999988765
Q ss_pred CCCC-c-cccHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 010809 417 KKFD-A-DVSLDVIAMRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 417 ~~l~-~-dvdl~~la~~t~G~sgadL~~lv~eAa~~A 451 (500)
.++. + +..+..++..+.| +.+++.++++.++..+
T Consensus 209 ~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 209 ERIQLETKDILKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred cCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 4432 2 3447888888887 8888888888777544
No 75
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=1.4e-16 Score=171.36 Aligned_cols=210 Identities=19% Similarity=0.184 Sum_probs=133.5
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-hHHhhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVEMFVGV 307 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se-~~~~~vG~ 307 (500)
..++|.+++++.+...+.. ..++||+||||||||++|+++|..++ .+|..+++.- -.+.+.|.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 4588999888766554431 23799999999999999999999884 4666666531 11222221
Q ss_pred --hhh-HHHHHHHHHHhC---CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCC-------C-CCCCeEEE
Q 010809 308 --GAS-RVRDLFKKAKEN---APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGF-------E-GNTGIIVI 373 (500)
Q Consensus 308 --~~~-~vr~lf~~a~~~---~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~-------~-~~~~viVI 373 (500)
+.. .-...|..+... .++|||||||+.+ +. .+.+.|+..|+.. . ..+..++|
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~-----------~~---~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIWKA-----------GP---AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGGGC-----------CH---HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHhhh-----------cH---HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 110 011223222222 4679999999876 22 3445555555421 1 11122467
Q ss_pred EeeCCC-C--CCchhhcCCCCcceEEEecCCCH-HHHHHHHHHHhcC-------------------------CCCCcccc
Q 010809 374 AATNRA-D--ILDSALLRPGRFDRQVTVDVPDI-RGRTEILKVHGSN-------------------------KKFDADVS 424 (500)
Q Consensus 374 aaTN~~-~--~Ld~aLlrpgRfdr~I~v~~Pd~-~eR~~IL~~~l~~-------------------------~~l~~dvd 424 (500)
+|||.+ + .+.+++++ ||...+.+++|+. +++.+|++.+... ..+++++
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v- 230 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV- 230 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-
Confidence 777853 2 24468999 9998999999987 6788898865431 1122111
Q ss_pred HHHHHHh---------CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 425 LDVIAMR---------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 425 l~~la~~---------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
.+.++.. ..|.|++.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 231 ~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 231 FELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred HHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 2333322 3578999999999999999999999999999998 544443
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1e-16 Score=176.02 Aligned_cols=223 Identities=20% Similarity=0.206 Sum_probs=137.8
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE----echhhHHh---
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI----SGSEFVEM--- 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i----s~se~~~~--- 303 (500)
..|+|++++|+.+.-.+..-. +........+...++||+||||||||++|+++|+.++.+++.. ++.++...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~-~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~ 373 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV-PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVR 373 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC-CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSS
T ss_pred chhcChHHHHHHHHHHHhCCC-cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeee
Confidence 467888887765532221110 0000011112233799999999999999999999987665542 22222211
Q ss_pred --hhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc------CC--CCCCCeEEE
Q 010809 304 --FVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD------GF--EGNTGIIVI 373 (500)
Q Consensus 304 --~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd------~~--~~~~~viVI 373 (500)
+.|... .....+..| ..+|+||||||.+ +.+.+..|.+.+.+-. +. ..+.++.||
T Consensus 374 ~~~~g~~~-~~~G~l~~A---~~gil~IDEid~l-----------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 374 EKGTGEYY-LEAGALVLA---DGGIAVIDEIDKM-----------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp GGGTSSCS-EEECHHHHH---SSSEECCTTTTCC-----------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred cccccccc-ccCCeeEec---CCCcEEeehhhhC-----------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 111100 001123333 2369999999998 3333444444443211 10 113468899
Q ss_pred EeeCCCC-------------CCchhhcCCCCcce-EEEecCCCHHHHHHHHHHHhcCCC-------CC------------
Q 010809 374 AATNRAD-------------ILDSALLRPGRFDR-QVTVDVPDIRGRTEILKVHGSNKK-------FD------------ 420 (500)
Q Consensus 374 aaTN~~~-------------~Ld~aLlrpgRfdr-~I~v~~Pd~~eR~~IL~~~l~~~~-------l~------------ 420 (500)
+|||+.. .+++++++ |||. .+..+.|+.+ ...|.+..+.... ++
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 9999876 89999999 9985 5566777777 7777776654322 11
Q ss_pred -------ccccHHHHHHh--------------CCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 421 -------ADVSLDVIAMR--------------TPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 421 -------~dvdl~~la~~--------------t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
++...+.+... ..+.|.+.+.++++.|..+|..+++..|+.+|+.+|+.-..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMR 588 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHH
Confidence 11112333332 24679999999999999999999999999999999998544
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=2.7e-14 Score=147.59 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=152.8
Q ss_pred cCcccccCChHHHHHHHHHH-HHhcChhhhhhhCCCCCceEEE--EcCCCChHHHHHHHHHHhc---------CCCEEEE
Q 010809 228 VTFDDVAGVDEAKQDFMEVV-EFLKKPERFTAIGARIPKGVLL--VGPPGTGKTLLAKAIAGEA---------GVPFFSI 295 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v-~~l~~p~~~~~~G~~~p~gvLL--~GppGTGKT~LAralA~e~---------~~pfi~i 295 (500)
...++++|.++..+++.+.+ ....... ...+..++| +||||+|||+|++++++++ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 44588999999999998887 6532210 023457999 9999999999999998875 5678888
Q ss_pred echh------hHHhhh---hh-------hhhH-HHHHHHHHH-hCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHH
Q 010809 296 SGSE------FVEMFV---GV-------GASR-VRDLFKKAK-ENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (500)
Q Consensus 296 s~se------~~~~~v---G~-------~~~~-vr~lf~~a~-~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (500)
+|.. +...+. +. .... ...+.+... ...|.+|+|||+|.+...+. . ....+..+
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~-----~---~~~~l~~l 164 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR-----I---AAEDLYTL 164 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT-----S---CHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC-----c---chHHHHHH
Confidence 8743 221111 11 1111 222222222 34588999999999953210 0 12344444
Q ss_pred HHHhcCCC-CC--CCeEEEEeeCCCC---CCc---hhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC---CCCccccH
Q 010809 358 LTEMDGFE-GN--TGIIVIAATNRAD---ILD---SALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---KFDADVSL 425 (500)
Q Consensus 358 L~emd~~~-~~--~~viVIaaTN~~~---~Ld---~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~---~l~~dvdl 425 (500)
+..++... .. .++.+|++|+.++ .++ +.+.+ |+...+.+++++.++..++++.++... ..-++..+
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~ 242 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHL 242 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHH
Confidence 44444332 12 5788888887665 344 56666 666669999999999999998765421 11123346
Q ss_pred HHHHHhCC------CCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Q 010809 426 DVIAMRTP------GFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIV 472 (500)
Q Consensus 426 ~~la~~t~------G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~ 472 (500)
..++..+. | +++.+.+++..|...|..++...++.+++..++....
T Consensus 243 ~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 243 ELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 77888888 8 8889999999999888888888999999999987754
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=2.9e-15 Score=170.84 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=136.7
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh--
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~-- 304 (500)
+++|+|++++++.+...+......... ..++..++||+||||||||++|++++..+ +.+|++++|+++.+..
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~---~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKD---PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSC---SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCC---CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 467899999999999888764321000 01222479999999999999999999988 7899999999876531
Q ss_pred ---hhh-----hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC---------CC
Q 010809 305 ---VGV-----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE---------GN 367 (500)
Q Consensus 305 ---vG~-----~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~---------~~ 367 (500)
.|. +......+....+...+++|||||+|.+ +. .+++.|+..++.-. .-
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l-----------~~---~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA-----------HP---DVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS-----------CH---HHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc-----------CH---HHHHHHHHHhccCceECCCCCEecc
Confidence 111 1111233444455566789999999987 33 34555666655321 01
Q ss_pred CCeEEEEeeCCC--------------------------CCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC----
Q 010809 368 TGIIVIAATNRA--------------------------DILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK---- 417 (500)
Q Consensus 368 ~~viVIaaTN~~--------------------------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~---- 417 (500)
.+++||+|||.. ..+.++|+. ||+..+.+.+|+.++...|++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 367899999972 245677777 999889999999999999998776521
Q ss_pred ---CCC---ccccHHHHHHh-C-CCCcHHHHHHHHHHHHHHHH
Q 010809 418 ---KFD---ADVSLDVIAMR-T-PGFSGADLANLLNEAAILAG 452 (500)
Q Consensus 418 ---~l~---~dvdl~~la~~-t-~G~sgadL~~lv~eAa~~A~ 452 (500)
... ++..++.++.. + +.++.++|+++++.+...+.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHH
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHH
Confidence 111 11224555553 4 13489999999998876653
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.56 E-value=2.5e-15 Score=134.80 Aligned_cols=112 Identities=21% Similarity=0.296 Sum_probs=83.2
Q ss_pred cccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhH
Q 010809 232 DVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASR 311 (500)
Q Consensus 232 dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~ 311 (500)
+++|.+++.+++.+.+..+.. .+.+|+|+||||||||++|++++.+.. ||++++|+++.+.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhC----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 588999999999988876432 234799999999999999999999888 99999999876543
Q ss_pred HHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 312 VRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 312 vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
.+.+|+.+. .++|||||+|.+ ..+.+..+.+++.+.. +.++.+|++||.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l-----------~~~~q~~Ll~~l~~~~----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQY-----------SRNIQTGITFIIGKAE----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTC-----------CHHHHHHHHHHHHHHT----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHC-----------CHHHHHHHHHHHHhCC----CCCEEEEEecCCC
Confidence 455666553 469999999998 3445555556665432 4567889998864
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=1.8e-14 Score=129.39 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=81.6
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhh
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGV 307 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~ 307 (500)
.+++|.+++.+++.+.+..+.. .+.+|||+||||||||++|++++... +.||+ ++|+.+.+.
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---- 65 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSE----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---- 65 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTT----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS----
T ss_pred CCceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc----
Confidence 3688999999999888876532 23479999999999999999999976 78999 999876543
Q ss_pred hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC
Q 010809 308 GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA 379 (500)
Q Consensus 308 ~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~ 379 (500)
......|+.+. .++|||||+|.+ ..+.+..+.+++ .. ...++.+|++||.+
T Consensus 66 --~~~~~~~~~a~---~g~l~ldei~~l-----------~~~~q~~Ll~~l---~~--~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 --PQLNDFIALAQ---GGTLVLSHPEHL-----------TREQQYHLVQLQ---SQ--EHRPFRLIGIGDTS 116 (145)
T ss_dssp --SCHHHHHHHHT---TSCEEEECGGGS-----------CHHHHHHHHHHH---HS--SSCSSCEEEEESSC
T ss_pred --hhhhcHHHHcC---CcEEEEcChHHC-----------CHHHHHHHHHHH---hh--cCCCEEEEEECCcC
Confidence 33455666663 358999999998 334444444444 32 23467889999874
No 81
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=4.4e-13 Score=136.68 Aligned_cols=159 Identities=18% Similarity=0.196 Sum_probs=115.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCC------------------------EEEEechhhHHhhhhhhhhHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVP------------------------FFSISGSEFVEMFVGVGASRVRDLFK 317 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~p------------------------fi~is~se~~~~~vG~~~~~vr~lf~ 317 (500)
+.|..+||+||||+|||++|+++|+.+..+ ++.++..+- -...+.+.++++++
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHH
Confidence 456689999999999999999999987532 233332100 00123356778877
Q ss_pred HHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcc
Q 010809 318 KAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFD 393 (500)
Q Consensus 318 ~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfd 393 (500)
.+.. ..+.|++|||+|.+. ....|.|+..++. ++.++++|.+||.++.+.+++++ |+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~--------------~~a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~S--Rc~ 160 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT--------------DAAANALLKTLEE--PPAETWFFLATREPERLLATLRS--RCR 160 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC--------------HHHHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHT--TSE
T ss_pred HHhhccccCCcEEEEECchhhcC--------------HHHHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhh--cce
Confidence 7643 346899999999982 2356778888874 45678889999999999999999 885
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHH
Q 010809 394 RQVTVDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEA 447 (500)
Q Consensus 394 r~I~v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eA 447 (500)
.+.+++|+.++..++++... .. ++..+..++..+.| +.+.+.++++.+
T Consensus 161 -~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G-~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAG-SPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTT-CHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCC-CHHHHHHHhccc
Confidence 79999999999999998775 22 23345778888887 777666665543
No 82
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.48 E-value=4.8e-13 Score=147.06 Aligned_cols=220 Identities=21% Similarity=0.329 Sum_probs=136.6
Q ss_pred cCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCC---EEEEechh
Q 010809 223 EPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVP---FFSISGSE 299 (500)
Q Consensus 223 ~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~p---fi~is~se 299 (500)
...++.+|++++|.+.+++.+...+.. ..+++|+||||||||++|+++|+..... .+.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 345677899999999998777666541 1279999999999999999999977422 12221111
Q ss_pred h------------------HHhh--------------------------------------hhhhhhHHHHHHHH-----
Q 010809 300 F------------------VEMF--------------------------------------VGVGASRVRDLFKK----- 318 (500)
Q Consensus 300 ~------------------~~~~--------------------------------------vG~~~~~vr~lf~~----- 318 (500)
. .+.. +.........+|..
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 0 0000 00000011122210
Q ss_pred ------------------HHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc----C------------C
Q 010809 319 ------------------AKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD----G------------F 364 (500)
Q Consensus 319 ------------------a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd----~------------~ 364 (500)
.....+.+|||||+|.+ +.+.+..|.++|.+-. + .
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l-----------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~ 247 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATL-----------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTE 247 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGS-----------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCS
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhC-----------CHHHHHHHHHHHHcCcEEecccccccccccCCCC
Confidence 11124569999999998 3445555555555321 1 0
Q ss_pred CCCCCeEEEEeeCCC--CCCchhhcCCCCcc---eEEEecC--C-CHHHHHHHHHHHhcC-------CCCCccccHHHHH
Q 010809 365 EGNTGIIVIAATNRA--DILDSALLRPGRFD---RQVTVDV--P-DIRGRTEILKVHGSN-------KKFDADVSLDVIA 429 (500)
Q Consensus 365 ~~~~~viVIaaTN~~--~~Ld~aLlrpgRfd---r~I~v~~--P-d~~eR~~IL~~~l~~-------~~l~~dvdl~~la 429 (500)
.-+.++.||++||+. +.++++|++ ||+ ..+.++. + +.+....+++...+. ..++++. +..+.
T Consensus 248 ~~p~~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eA-l~~Li 324 (604)
T 3k1j_A 248 PVPCDFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEA-VEEIV 324 (604)
T ss_dssp CEECCCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHH-HHHHH
T ss_pred ccceeEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHH-HHHHH
Confidence 112368899999986 679999999 996 3455432 2 344455555433321 1222222 33333
Q ss_pred H---hCCCC------cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 430 M---RTPGF------SGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 430 ~---~t~G~------sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
. ++.|- +.+++.++++.|...|..+++..|+.+|+.+|++.
T Consensus 325 ~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 325 REAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 3 34663 79999999999999999999999999999999964
No 83
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.47 E-value=6.1e-14 Score=167.68 Aligned_cols=152 Identities=20% Similarity=0.260 Sum_probs=111.0
Q ss_pred CCcCcccccCChHHHHHHHHHHHH-hcC----------hhhhhh------hCCC----------CCce--EEEEcCCCCh
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEF-LKK----------PERFTA------IGAR----------IPKG--VLLVGPPGTG 276 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~-l~~----------p~~~~~------~G~~----------~p~g--vLL~GppGTG 276 (500)
+.++|+||.|.+++|+++.+.+.+ ++. ++.|.. .|.. +|+| +++|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 458999999999999999998888 532 556665 3333 5666 9999999999
Q ss_pred HHHHHHHHHHhc---CCCEEEEechhhH------------Hhhhhh----hhhHHHHHHHHHHhCCCeEEEEcCcchhhh
Q 010809 277 KTLLAKAIAGEA---GVPFFSISGSEFV------------EMFVGV----GASRVRDLFKKAKENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 277 KT~LAralA~e~---~~pfi~is~se~~------------~~~vG~----~~~~vr~lf~~a~~~~p~IIfIDEID~l~~ 337 (500)
||+||++++.+. +-|.++|+..+.. +++++. +++.++.+|..|+..+||+||+||+|++.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999998866 6677777776543 455566 788899999999999999999999999998
Q ss_pred ccC---CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 338 QRG---TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 338 ~r~---~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
.++ ........-..+.++|+|.+|++.....+|+|| +||+
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 843 211111234566899999999987777788888 7776
No 84
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.43 E-value=4.3e-13 Score=108.37 Aligned_cols=76 Identities=24% Similarity=0.450 Sum_probs=72.4
Q ss_pred cCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 399 DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 399 ~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
|+||.++|.+||+.|+++.++..++|+..+|..|+||||+||.++|++|++.|.+++...|+++||.+|+++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC-
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999988899999999999999999999999999999999999999999999999998753
No 85
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.41 E-value=6e-13 Score=109.89 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=73.2
Q ss_pred ecCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcC
Q 010809 398 VDVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAG 474 (500)
Q Consensus 398 v~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g 474 (500)
-.+||.++|.+||+.++++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||.+|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 35899999999999999999998999999999999999999999999999999999999999999999999998754
No 86
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.40 E-value=7.7e-13 Score=137.86 Aligned_cols=208 Identities=21% Similarity=0.322 Sum_probs=135.1
Q ss_pred cccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh--
Q 010809 230 FDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF-- 304 (500)
Q Consensus 230 f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~-- 304 (500)
+.+++|.+...+++.+.+..+.... ..++|+|++||||+++|+++.... +.||+.++|+.+.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~----------~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAE----------CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCC----------SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCC----------CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4578888888888888777654432 368999999999999999997755 4799999998765432
Q ss_pred ---hhh------hh-hHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CC
Q 010809 305 ---VGV------GA-SRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NT 368 (500)
Q Consensus 305 ---vG~------~~-~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~~ 368 (500)
.|. ++ .....+|+.|.. .+||||||+.+ +.+.+..|.+++.+-. .... ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 271 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGEL-----------SLEAQAKLLRVIESGKFYRLGGRKEIEV 271 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGC-----------CHHHHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhC-----------CHHHHHHHHHHHhcCcEEeCCCCceeec
Confidence 111 00 112345666644 49999999998 5566666666666521 1111 13
Q ss_pred CeEEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHh----cCCC-----CCccccHHHH
Q 010809 369 GIIVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHG----SNKK-----FDADVSLDVI 428 (500)
Q Consensus 369 ~viVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l----~~~~-----l~~dvdl~~l 428 (500)
++.+|++||..- .+.+.|.. |+. .+.+..|+.++|.+ +++.++ ++.. ++++.--...
T Consensus 272 ~~rii~at~~~l~~~~~~g~fr~dl~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~ 348 (387)
T 1ny5_A 272 NVRILAATNRNIKELVKEGKFREDLYY--RLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLL 348 (387)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHH--HHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHH
T ss_pred cEEEEEeCCCCHHHHHHcCCccHHHHH--hhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 688999999731 23333333 443 56677788877644 223222 2222 2222222233
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 010809 429 AMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSI 468 (500)
Q Consensus 429 a~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai 468 (500)
...|+| +.++|+|+++.|+..+ ....|+.+|+...+
T Consensus 349 ~~~wpG-NvreL~~~i~~~~~~~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 349 SYPWYG-NVRELKNVIERAVLFS---EGKFIDRGELSCLV 384 (387)
T ss_dssp HSCCTT-HHHHHHHHHHHHHHHC---CSSEECHHHHHHHC
T ss_pred hCCCCc-HHHHHHHHHHHHHHhC---CCCcCcHHHCcHhh
Confidence 456888 9999999999999876 34579999886544
No 87
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.38 E-value=8.5e-13 Score=109.37 Aligned_cols=79 Identities=22% Similarity=0.471 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCCCCC
Q 010809 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEGTVM 480 (500)
Q Consensus 402 d~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~~~~ 480 (500)
|.++|.+||+.|+++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||++|++++..|.++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC-------
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCcccccc
Confidence 5678999999999999999999999999999999999999999999999999999999999999999999999877653
No 88
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=7.7e-12 Score=126.41 Aligned_cols=142 Identities=13% Similarity=0.155 Sum_probs=105.1
Q ss_pred CChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc------CCCEEEEechhhHHhhhhhh
Q 010809 235 GVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISGSEFVEMFVGVG 308 (500)
Q Consensus 235 G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~------~~pfi~is~se~~~~~vG~~ 308 (500)
|++++.+.|...++.-+ +..+||+||||+|||++|+++|+.+ ...++.+++++ ...+
T Consensus 1 g~~~~~~~L~~~i~~~~------------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE------------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTCS------------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBC
T ss_pred ChHHHHHHHHHHHHCCC------------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCC
Confidence 56677777776665322 2379999999999999999999863 44677777542 0133
Q ss_pred hhHHHHHHHHHHhC----CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch
Q 010809 309 ASRVRDLFKKAKEN----APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS 384 (500)
Q Consensus 309 ~~~vr~lf~~a~~~----~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~ 384 (500)
.+.+|++++.+... ...|+||||+|.+. ....|.|+..|+. ++..+++|.+|+.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt--------------~~a~naLLk~LEe--p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT--------------QQAANAFLKALEE--PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC--------------HHHHHHTHHHHHS--CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC--------------HHHHHHHHHHHhC--CCCCeEEEEEECChHhChH
Confidence 45678888888543 24799999999992 2346778888874 4567888888888999999
Q ss_pred hhcCCCCcceEEEecCCCHHHHHHHHHHHh
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l 414 (500)
++++ | ++.+++|+.++..++++..+
T Consensus 128 tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 8 78999999999999888776
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=1.2e-11 Score=114.01 Aligned_cols=134 Identities=17% Similarity=0.226 Sum_probs=84.5
Q ss_pred CCCcCcccccCCh-HHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechh
Q 010809 225 NTGVTFDDVAGVD-EAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSE 299 (500)
Q Consensus 225 ~~~~~f~dv~G~d-e~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se 299 (500)
..+.+|+++++.+ +.++.+..+.+++.+-. ...+.+++|+||||||||+|++++++.+ +..++++++.+
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~ 77 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFN------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD 77 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcc------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3456899998743 33334433444443321 1225589999999999999999999876 77888899988
Q ss_pred hHHhhhhhhhh-HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 300 FVEMFVGVGAS-RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 300 ~~~~~vG~~~~-~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
+.+.+...... ....+++.. ..|.+|+|||++.. +.+....+.+.+++.... ..+..+|.+||.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~---------~~~~~~~~~l~~ll~~~~----~~~~~ii~tsn~ 142 (180)
T 3ec2_A 78 LIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSE---------RLSDWQRELISYIITYRY----NNLKSTIITTNY 142 (180)
T ss_dssp HHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSS---------CCCHHHHHHHHHHHHHHH----HTTCEEEEECCC
T ss_pred HHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCC---------cCCHHHHHHHHHHHHHHH----HcCCCEEEEcCC
Confidence 87654322111 111233332 25689999999864 124455567777776553 134567778876
Q ss_pred C
Q 010809 379 A 379 (500)
Q Consensus 379 ~ 379 (500)
+
T Consensus 143 ~ 143 (180)
T 3ec2_A 143 S 143 (180)
T ss_dssp C
T ss_pred C
Confidence 4
No 90
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.28 E-value=3.9e-11 Score=149.19 Aligned_cols=137 Identities=20% Similarity=0.328 Sum_probs=98.2
Q ss_pred ceEEEEcCCCChHHHHHHH-HHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHH---------------hCCCeEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKA-IAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAK---------------ENAPCIVF 328 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra-lA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~---------------~~~p~IIf 328 (500)
+++||+||||||||++|+. ++...+.+++.++++...+ +..+...++... .+.++|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 4899999999999999955 5555578888888876542 233444444321 12357999
Q ss_pred EcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCC--------CCeEEEEeeCCCC-----CCchhhcCCCCcceE
Q 010809 329 VDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGN--------TGIIVIAATNRAD-----ILDSALLRPGRFDRQ 395 (500)
Q Consensus 329 IDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~--------~~viVIaaTN~~~-----~Ld~aLlrpgRfdr~ 395 (500)
|||+|.....+. |.....+.+.|++. ..++... .++.+|||+|++. .++++++| || ..
T Consensus 1342 iDEinmp~~d~y-----g~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR--rf-~v 1412 (2695)
T 4akg_A 1342 CDEINLPKLDKY-----GSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR--HA-AI 1412 (2695)
T ss_dssp EETTTCSCCCSS-----SCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT--TE-EE
T ss_pred eccccccccccc-----CchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh--ee-eE
Confidence 999987533321 23345667777774 3332211 2589999999984 89999999 99 78
Q ss_pred EEecCCCHHHHHHHHHHHhcC
Q 010809 396 VTVDVPDIRGRTEILKVHGSN 416 (500)
Q Consensus 396 I~v~~Pd~~eR~~IL~~~l~~ 416 (500)
+.++.|+.+++..|+..+++.
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887753
No 91
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.19 E-value=2.9e-11 Score=98.64 Aligned_cols=74 Identities=22% Similarity=0.355 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCc
Q 010809 402 DIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGM 475 (500)
Q Consensus 402 d~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~ 475 (500)
|.++|.+||+.|+++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||..|++++..+.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~ 75 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKD 75 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCc
Confidence 67899999999999999989999999999999999999999999999999999999999999999999987553
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.17 E-value=6.9e-11 Score=110.71 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=66.6
Q ss_pred CcCcccccCChHHHH-HHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 227 GVTFDDVAGVDEAKQ-DFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 227 ~~~f~dv~G~de~k~-~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
..+|+++++.+...+ .+..+..++..... ...|.+++|+||||||||++|++++.++ +.++++++++++..
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 468999998764333 33333344332210 0123689999999999999999999877 78999999998876
Q ss_pred hhhhhh-hhHHHHHHHHHHhCCCeEEEEcCcchh
Q 010809 303 MFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (500)
Q Consensus 303 ~~vG~~-~~~vr~lf~~a~~~~p~IIfIDEID~l 335 (500)
.+.... ...+..++..... +.+|+|||++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 96 ELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred HHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 543211 1112334444433 359999999775
No 93
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.15 E-value=4.5e-11 Score=123.73 Aligned_cols=192 Identities=21% Similarity=0.344 Sum_probs=121.0
Q ss_pred ccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCC--CEEEEechhhHHh-----
Q 010809 231 DDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSEFVEM----- 303 (500)
Q Consensus 231 ~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~--pfi~is~se~~~~----- 303 (500)
.+++|.+....++.+.+..+.... ..++++|++||||+++|+++....+. +|+.++|..+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~----------~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSK----------APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSC----------SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccc----------hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 467899998888888877654322 26999999999999999999776533 4999999865432
Q ss_pred hhhhh-------hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhc--CCCC----CCCe
Q 010809 304 FVGVG-------ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMD--GFEG----NTGI 370 (500)
Q Consensus 304 ~vG~~-------~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd--~~~~----~~~v 370 (500)
..|.. ...-...|+.|.. .+||||||+.+ +...+..|.+++.+-. .... ..++
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l-----------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 264 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGEL-----------DQRVQAKLLRVLETGSFTRLGGNQKIEVDI 264 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGS-----------CHHHHHHHHHHHHHSEECCBTCCCBEECCC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhC-----------CHHHHHHHHHHHHhCCcccCCCCcceeeee
Confidence 11110 0111235666543 48999999999 5566666666666432 1111 1257
Q ss_pred EEEEeeCCCC-------CCchhhcCCCCcceEEEecCCCHHHHHH----HHHHHhc----CC-----CCCccccHHHH-H
Q 010809 371 IVIAATNRAD-------ILDSALLRPGRFDRQVTVDVPDIRGRTE----ILKVHGS----NK-----KFDADVSLDVI-A 429 (500)
Q Consensus 371 iVIaaTN~~~-------~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~----IL~~~l~----~~-----~l~~dvdl~~l-a 429 (500)
.+|++||..- .+.+.|.. |+. .+.+..|+.++|.+ +++.+++ .. .++++. +..+ .
T Consensus 265 rii~at~~~l~~~v~~g~fr~dL~~--rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a-~~~L~~ 340 (368)
T 3dzd_A 265 RVISATNKNLEEEIKKGNFREDLYY--RLS-VFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEET-KEYLMK 340 (368)
T ss_dssp EEEEEESSCHHHHHHTTSSCHHHHH--HHT-SEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHH-HHHHHT
T ss_pred EEEEecCCCHHHHHHcCCccHHHHH--HhC-CeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHH-HHHHHh
Confidence 8999999631 23334444 443 56677777776643 3333322 11 123332 3333 3
Q ss_pred HhCCCCcHHHHHHHHHHHHHHH
Q 010809 430 MRTPGFSGADLANLLNEAAILA 451 (500)
Q Consensus 430 ~~t~G~sgadL~~lv~eAa~~A 451 (500)
..|+| +.++|+|+++.|+..+
T Consensus 341 ~~wpG-NvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 341 QEWKG-NVRELKNLIERAVILC 361 (368)
T ss_dssp CCCTT-HHHHHHHHHHHHHHTC
T ss_pred CCCCc-HHHHHHHHHHHHHHhC
Confidence 45788 9999999999998765
No 94
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.12 E-value=2.1e-09 Score=107.85 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=117.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh------
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF------ 300 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~------ 300 (500)
....++++|.++..+.|.+ +. . ..++|+||+|+|||+|++.++++++.+++++++...
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~---~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR---A------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI 72 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC---S------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCC
T ss_pred CCCHHHhcChHHHHHHHHH-hc---C------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCC
Confidence 4456788999887776665 32 2 279999999999999999999998778888887643
Q ss_pred -----HHhhhhh-----------------------------------hhhHHHHHHHHHHhC--CCeEEEEcCcchhhhc
Q 010809 301 -----VEMFVGV-----------------------------------GASRVRDLFKKAKEN--APCIVFVDEIDAVGRQ 338 (500)
Q Consensus 301 -----~~~~vG~-----------------------------------~~~~vr~lf~~a~~~--~p~IIfIDEID~l~~~ 338 (500)
...+... ....+..+++..... .|.+|+|||+|.+...
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 73 SYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKL 152 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGC
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhcc
Confidence 1110000 012345566555443 3899999999998542
Q ss_pred cCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCc---------hhhcCCCCcceEEEecCCCHHHHHHH
Q 010809 339 RGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILD---------SALLRPGRFDRQVTVDVPDIRGRTEI 409 (500)
Q Consensus 339 r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld---------~aLlrpgRfdr~I~v~~Pd~~eR~~I 409 (500)
. ..+....+..+.... .++.+|.+++....+. ..+ .+|+...+.+++.+.++..++
T Consensus 153 ~-------~~~~~~~l~~~~~~~------~~~~~i~~g~~~~~l~~~l~~~~~~~~l--~~r~~~~i~l~~l~~~e~~~~ 217 (357)
T 2fna_A 153 R-------GVNLLPALAYAYDNL------KRIKFIMSGSEMGLLYDYLRVEDPESPL--FGRAFSTVELKPFSREEAIEF 217 (357)
T ss_dssp T-------TCCCHHHHHHHHHHC------TTEEEEEEESSHHHHHHHTTTTCTTSTT--TTCCCEEEEECCCCHHHHHHH
T ss_pred C-------chhHHHHHHHHHHcC------CCeEEEEEcCchHHHHHHHhccCCCCcc--ccCccceeecCCCCHHHHHHH
Confidence 1 111223344444321 2466666665432111 112 236667899999999999999
Q ss_pred HHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHH
Q 010809 410 LKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNE 446 (500)
Q Consensus 410 L~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~e 446 (500)
+...+.......+. ...+...+.| ++.-+..++..
T Consensus 218 l~~~~~~~~~~~~~-~~~i~~~t~G-~P~~l~~~~~~ 252 (357)
T 2fna_A 218 LRRGFQEADIDFKD-YEVVYEKIGG-IPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHHTCCCCC-HHHHHHHHCS-CHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCc-HHHHHHHhCC-CHHHHHHHHHH
Confidence 98776432222222 3778888888 56666665544
No 95
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.12 E-value=1.6e-11 Score=100.25 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCCccccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcCC
Q 010809 404 RGRTEILKVHGSNKKFDADVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGMEG 477 (500)
Q Consensus 404 ~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~~ 477 (500)
++|.+||+.|+++.++.+++|++.+|..|+||||+||.++|++|++.|.+++...|+++||..|++++..+...
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~ 74 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNT 74 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCC
Confidence 46899999999999988899999999999999999999999999999999999999999999999998766543
No 96
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.07 E-value=1e-08 Score=102.68 Aligned_cols=190 Identities=20% Similarity=0.186 Sum_probs=115.7
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH-----
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV----- 301 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~----- 301 (500)
...-++++|.++..+.|.+.+.. | ..++|+||+|+|||+|++.++++.+ ++++++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~ 71 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGH 71 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTC
T ss_pred CCChHhcCChHHHHHHHHHHHhc----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccC
Confidence 34556789999988888877652 1 3799999999999999999999875 7778775432
Q ss_pred -------Hhhh--------------------hhh----hhHHHHHHHHH----HhCCCeEEEEcCcchhhhccCCCCCCC
Q 010809 302 -------EMFV--------------------GVG----ASRVRDLFKKA----KENAPCIVFVDEIDAVGRQRGTGIGGG 346 (500)
Q Consensus 302 -------~~~v--------------------G~~----~~~vr~lf~~a----~~~~p~IIfIDEID~l~~~r~~~~~~~ 346 (500)
..+. +.. ...+.++++.. ....|.+|+|||+|.+..... ..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~----~~ 147 (350)
T 2qen_A 72 ITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS----RG 147 (350)
T ss_dssp BCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----TT
T ss_pred CCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----cc
Confidence 1110 000 12233444333 222389999999999843100 01
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCC---------chhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCC
Q 010809 347 NDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADIL---------DSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNK 417 (500)
Q Consensus 347 ~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~L---------d~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~ 417 (500)
.......+..++... .++.+|.++.....+ ...+. ||+...+.+++.+.++-.+++...+...
T Consensus 148 ~~~~~~~L~~~~~~~------~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~ 219 (350)
T 2qen_A 148 GKELLALFAYAYDSL------PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREV 219 (350)
T ss_dssp THHHHHHHHHHHHHC------TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHhc------CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHc
Confidence 122333344443321 355666665432111 11222 3666689999999999999998876544
Q ss_pred CCC-ccccHHHHHHhCCCCcHHHHHHHHH
Q 010809 418 KFD-ADVSLDVIAMRTPGFSGADLANLLN 445 (500)
Q Consensus 418 ~l~-~dvdl~~la~~t~G~sgadL~~lv~ 445 (500)
... .+.....+...+.| ++.-+..++.
T Consensus 220 ~~~~~~~~~~~i~~~tgG-~P~~l~~~~~ 247 (350)
T 2qen_A 220 NLDVPENEIEEAVELLDG-IPGWLVVFGV 247 (350)
T ss_dssp TCCCCHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 322 23346677888888 5555655554
No 97
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.04 E-value=4.3e-12 Score=128.81 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=69.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec--hhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccC
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG--SEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRG 340 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~--se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~ 340 (500)
....++|+||||||||+||.++|.+.+.++.+++. ++.++.+.......++.+++...+.. +|||||++.+.....
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~ 199 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAG 199 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC----
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccccc
Confidence 33457999999999999999999876555444444 33322222223344455555555544 999999999954432
Q ss_pred CCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhh
Q 010809 341 TGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSAL 386 (500)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aL 386 (500)
.... .....+.+.+++..+.++....++.+|+++| +...|+++
T Consensus 200 ~~s~--~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 200 GNTT--SGGISRGAFDLLSDIGAMAASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHTCEEEEECC-CSSCSSSH
T ss_pred cccc--cchHHHHHHHHHHHHHHHHhhCCCEEEEEeC-CcccchhH
Confidence 2100 0112345566666665554455678888888 44455543
No 98
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.03 E-value=1.4e-09 Score=115.15 Aligned_cols=217 Identities=16% Similarity=0.108 Sum_probs=124.1
Q ss_pred ccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHH-HHhcCCCEEEEech-----hhHHhhhh
Q 010809 233 VAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAI-AGEAGVPFFSISGS-----EFVEMFVG 306 (500)
Q Consensus 233 v~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAral-A~e~~~pfi~is~s-----e~~~~~vG 306 (500)
|.|++.+|..+.-.+---. .. .+..-++||.|+||| ||++|+++ ++-+.. ..+.++. .+...+.+
T Consensus 215 I~G~e~vK~aLll~L~GG~-~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCV-GK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCC-SS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCc-cc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCCCCCccCceEEEEc
Confidence 8899998776554432111 00 112227999999999 99999999 665533 3333321 11100000
Q ss_pred -hhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHH----hcCCCCCCCeEEEEeeCCCC-
Q 010809 307 -VGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTE----MDGFEGNTGIIVIAATNRAD- 380 (500)
Q Consensus 307 -~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~e----md~~~~~~~viVIaaTN~~~- 380 (500)
.+...-...+..|.. .++|||||+.+ ....+..|.+.+++ +.|..-+.++.||||+|+.+
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~-----------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGA-----------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTC-----------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhC-----------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 000000112333333 49999999988 33333444444433 11211245689999999865
Q ss_pred ----------CCchhhcCCCCcceEE-EecCCCHHH-------------HHHHHHHHhc----CCCCCccccHHHH----
Q 010809 381 ----------ILDSALLRPGRFDRQV-TVDVPDIRG-------------RTEILKVHGS----NKKFDADVSLDVI---- 428 (500)
Q Consensus 381 ----------~Ld~aLlrpgRfdr~I-~v~~Pd~~e-------------R~~IL~~~l~----~~~l~~dvdl~~l---- 428 (500)
.|++++++ |||..+ .++.|+.+. .++++. +++ ...+++++. +.+
T Consensus 352 yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~-~ar~~~~~p~ls~ea~-~yI~~~y 427 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLL-YAIREHPAPELTEEAR-KRLEHWY 427 (506)
T ss_dssp -CCSCGGGGCCSCHHHHT--TCSEEEETTC--------------CCHHHHHHHHH-HHHHHCSCCEECHHHH-HHHHHHH
T ss_pred cCCCCCccccCCChHHhh--heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHH-HHHhcCCCceeCHHHH-HHHHHHH
Confidence 78899999 998744 345555433 112211 222 122232211 111
Q ss_pred -----H--H------hCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHcCcC
Q 010809 429 -----A--M------RTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDRIVAGME 476 (500)
Q Consensus 429 -----a--~------~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~v~~g~~ 476 (500)
. . ..-|.|++.+..+++-|-.+|..+++..|+.+|+++|+.=+.....
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 0 0 2447899999999999999999999999999999999986544433
No 99
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=8.4e-10 Score=99.77 Aligned_cols=104 Identities=16% Similarity=0.226 Sum_probs=69.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGT 341 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~ 341 (500)
..++|+||+|+|||+|++++++.+ +..++++++.++... +....|.+|+|||++.+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~----- 96 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG----- 96 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC-----
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC-----
Confidence 479999999999999999999977 777899988776543 112347899999998862
Q ss_pred CCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeC-CCCCCc--hhhcCCCCcceEEEec
Q 010809 342 GIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATN-RADILD--SALLRPGRFDRQVTVD 399 (500)
Q Consensus 342 ~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN-~~~~Ld--~aLlrpgRfdr~I~v~ 399 (500)
...++.+.+++..+.. ....++|.+|| .|+.+. +.+.+ |+..-..+.
T Consensus 97 ------~~~~~~l~~li~~~~~---~g~~~iiits~~~p~~l~~~~~L~S--Rl~~g~~~~ 146 (149)
T 2kjq_A 97 ------NEEQALLFSIFNRFRN---SGKGFLLLGSEYTPQQLVIREDLRT--RMAYCLVYE 146 (149)
T ss_dssp ------SHHHHHHHHHHHHHHH---HTCCEEEEEESSCTTTSSCCHHHHH--HGGGSEECC
T ss_pred ------hHHHHHHHHHHHHHHH---cCCcEEEEECCCCHHHccccHHHHH--HHhcCeeEE
Confidence 2225566666665431 22222444555 454332 77777 776544443
No 100
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.94 E-value=6.7e-10 Score=112.16 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=63.1
Q ss_pred CcCcccccCChHH-HHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhH
Q 010809 227 GVTFDDVAGVDEA-KQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (500)
Q Consensus 227 ~~~f~dv~G~de~-k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~ 301 (500)
+.+|+++.+.+.. ...+..+.+++.... ...+.+++|+||||||||+||+++|.++ +.++++++++++.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYP------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCS------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhcc------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 3689999876532 323333334443211 1124689999999999999999998754 5899999999887
Q ss_pred Hhhhhhh-hhHHHHHHHHHHhCCCeEEEEcCcchh
Q 010809 302 EMFVGVG-ASRVRDLFKKAKENAPCIVFVDEIDAV 335 (500)
Q Consensus 302 ~~~vG~~-~~~vr~lf~~a~~~~p~IIfIDEID~l 335 (500)
..+.... ...+..++.... .+.+|||||++..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 7654321 111222233332 2469999999765
No 101
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=1.2e-07 Score=118.23 Aligned_cols=165 Identities=16% Similarity=0.192 Sum_probs=110.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~ 344 (500)
.++++.||+|||||.+++++|+.+|.+++.++|++-.+ .+.+..+|..+... .+++++||++.+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~-Gaw~~~DE~nr~--------- 709 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQI-GAWGCFDEFNRL--------- 709 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhc-CCEeeehhhhhc---------
Confidence 47999999999999999999999999999999987543 23445667666544 379999999998
Q ss_pred CCChHHHHHHHHHHHH----hcC-----------CCCCCCeEEEEeeCC----CCCCchhhcCCCCcceEEEecCCCHHH
Q 010809 345 GGNDEREQTLNQLLTE----MDG-----------FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIRG 405 (500)
Q Consensus 345 ~~~~e~~~~L~~LL~e----md~-----------~~~~~~viVIaaTN~----~~~Ld~aLlrpgRfdr~I~v~~Pd~~e 405 (500)
..+....+++.+.. +.. +.-+..+.|++|.|. ...|++++++ || +.+.+..||.+.
T Consensus 710 --~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~ 784 (2695)
T 4akg_A 710 --DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGT 784 (2695)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHH
T ss_pred --ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHH
Confidence 44555555444432 210 122445778888884 4478999999 99 789999999998
Q ss_pred HHHHHHHHhcCCCCCccc-----cH-HHHHHhC-----CCCcHHHHHHHHHHHHHHH
Q 010809 406 RTEILKVHGSNKKFDADV-----SL-DVIAMRT-----PGFSGADLANLLNEAAILA 451 (500)
Q Consensus 406 R~~IL~~~l~~~~l~~dv-----dl-~~la~~t-----~G~sgadL~~lv~eAa~~A 451 (500)
..+|+-... +....... .+ ..+.... ..|.-+.++.++..|...-
T Consensus 785 i~ei~l~s~-Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~lk 840 (2695)
T 4akg_A 785 IAEMILQIM-GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPLI 840 (2695)
T ss_dssp HHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHhh
Confidence 777643221 11111111 00 1111111 1367888988888776543
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.74 E-value=5.8e-09 Score=99.00 Aligned_cols=128 Identities=22% Similarity=0.262 Sum_probs=83.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh--------cC-CCEEEEechhhHHhhh----------hh-----hhhHHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGE--------AG-VPFFSISGSEFVEMFV----------GV-----GASRVRDLFKKA 319 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e--------~~-~pfi~is~se~~~~~v----------G~-----~~~~vr~lf~~a 319 (500)
+--.|++|+||||||++|.+.+.. .| .++++.++.++..... .. ....+.+.+..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~- 83 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKK- 83 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTS-
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhc-
Confidence 446899999999999999886433 35 7777777766542211 11 11223322211
Q ss_pred HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEec
Q 010809 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVD 399 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~ 399 (500)
.....+||+|||++.+.+.+..+. +. ..++..++. ..+.++-+|.+|+.++.|+.++++ |++..+.++
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~-----e~----~rll~~l~~-~r~~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~ 151 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGS-----KI----PENVQWLNT-HRHQGIDIFVLTQGPKLLDQNLRT--LVRKHYHIA 151 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTC-----CC----CHHHHGGGG-TTTTTCEEEEEESCGGGBCHHHHT--TEEEEEEEE
T ss_pred cccCceEEEEEChhhhccCccccc-----hh----HHHHHHHHh-cCcCCeEEEEECCCHHHHhHHHHH--HhheEEEEc
Confidence 234468999999999976553211 11 124445443 234567788888889999999998 999999988
Q ss_pred CCCHH
Q 010809 400 VPDIR 404 (500)
Q Consensus 400 ~Pd~~ 404 (500)
.|...
T Consensus 152 ~~~~~ 156 (199)
T 2r2a_A 152 SNKMG 156 (199)
T ss_dssp ECSSC
T ss_pred CcccC
Confidence 76544
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.61 E-value=9.8e-08 Score=115.88 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=80.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH----hhhh------------hhhhHHHHHHHHHH
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----MFVG------------VGASRVRDLFKKAK 320 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~----~~vG------------~~~~~vr~lf~~a~ 320 (500)
|...+++++|+||||||||+||.+++.++ |..+.+++..+... ...| .++..++.++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 36667799999999999999999997765 56777777664321 1122 22345566666778
Q ss_pred hCCCeEEEEcCcchhhhcc---CCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 321 ENAPCIVFVDEIDAVGRQR---GTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~~r---~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
..+|++|||||++++.+.+ +...........+.+.++|.+|.++....+++||.+-
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 8899999999999987643 2211111112456778888888877767777776653
No 104
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.56 E-value=4e-08 Score=102.02 Aligned_cols=120 Identities=19% Similarity=0.239 Sum_probs=77.6
Q ss_pred hCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhh-
Q 010809 259 IGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGR- 337 (500)
Q Consensus 259 ~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~- 337 (500)
++.+.+..++|+||||+|||++++++++..+..++.+...+- +.. |........+++++||++.+..
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~----------~~~--~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD----------RLN--FELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT----------THH--HHHGGGTTCSCEEETTCCCSTTT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch----------hHH--HHHHHhcchhHHHHHHHHHHHHH
Confidence 366777789999999999999999999988777665433221 000 0011112346789999999865
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecC
Q 010809 338 QRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV 400 (500)
Q Consensus 338 ~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~ 400 (500)
.+... .+. .. .....+...++| .+.|+.+||+++.+ +++++|+|++..+....
T Consensus 232 ~r~l~--~~~-~~-~~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 232 SRDLP--SGQ-GI-NNLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTCC--CCS-HH-HHHHTTHHHHHC-----SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred Hhhcc--ccC-cc-hHHHHHHHHhcC-----CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 22211 111 11 133445555554 35678889999999 78999999987655533
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.53 E-value=9.6e-07 Score=111.15 Aligned_cols=136 Identities=21% Similarity=0.282 Sum_probs=91.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh-cCCCEEEEechhhHHhhhhhhhhHHHHHHHHH----H------------hCCCeEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE-AGVPFFSISGSEFVEMFVGVGASRVRDLFKKA----K------------ENAPCIV 327 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e-~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a----~------------~~~p~II 327 (500)
+++||+||||||||.+++.+... .+.+++.++++.-.+ +..+...++.. + .+..+|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 37999999999999877665444 466788888876432 23333334321 0 1223699
Q ss_pred EEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC-------CCCCeEEEEeeCCC-----CCCchhhcCCCCcceE
Q 010809 328 FVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE-------GNTGIIVIAATNRA-----DILDSALLRPGRFDRQ 395 (500)
Q Consensus 328 fIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~-------~~~~viVIaaTN~~-----~~Ld~aLlrpgRfdr~ 395 (500)
||||++.-.... -|.......|.|++..-.-+. .-.++.+|||.|.| ..++++++| ||. .
T Consensus 1379 FiDDiNmp~~D~-----yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r--~F~-v 1450 (3245)
T 3vkg_A 1379 FCDEINLPSTDK-----YGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLR--HAP-I 1450 (3245)
T ss_dssp EETTTTCCCCCT-----TSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHT--TCC-E
T ss_pred EecccCCCCccc-----cccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHh--hce-E
Confidence 999998642211 123345567777776421111 12468899999987 368999999 995 7
Q ss_pred EEecCCCHHHHHHHHHHHh
Q 010809 396 VTVDVPDIRGRTEILKVHG 414 (500)
Q Consensus 396 I~v~~Pd~~eR~~IL~~~l 414 (500)
+.++.|+.+....|+...+
T Consensus 1451 i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999977544
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.49 E-value=1.4e-06 Score=88.21 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=116.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CC-CEEEEechhhHHhhhhhhhhHHHHHHHHHHh----CCCeEEEEcCcch
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFFSISGSEFVEMFVGVGASRVRDLFKKAKE----NAPCIVFVDEIDA 334 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~-pfi~is~se~~~~~vG~~~~~vr~lf~~a~~----~~p~IIfIDEID~ 334 (500)
.+...||+||+|+||+..+++++..+ +. ++..+... +...++++++.+.. ....|++|||+|.
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---------PNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---------TTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---------CCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 34579999999999999999998754 32 32222111 12345666655532 3457999999988
Q ss_pred -hhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCC------CCCchhhcCCCCcceEEEecCCCHHHHH
Q 010809 335 -VGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRA------DILDSALLRPGRFDRQVTVDVPDIRGRT 407 (500)
Q Consensus 335 -l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~------~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~ 407 (500)
+. . ...+.|+..++. +++++++|.+++.+ ..+.+++.+ |. ..+.+..++.++..
T Consensus 88 kl~-----------~---~~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~ 148 (343)
T 1jr3_D 88 GPN-----------A---AINEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLP 148 (343)
T ss_dssp CCC-----------T---THHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHH
T ss_pred CCC-----------h---HHHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHH
Confidence 62 1 234556666664 23455555555443 346677777 76 47899999999998
Q ss_pred HHHHHHhcCCCCCc-cccHHHHHHhCCCCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Q 010809 408 EILKVHGSNKKFDA-DVSLDVIAMRTPGFSGADLANLLNEAAILAGRRGKAAISSKEIDDSIDR 470 (500)
Q Consensus 408 ~IL~~~l~~~~l~~-dvdl~~la~~t~G~sgadL~~lv~eAa~~A~r~~~~~It~~d~~~Ai~~ 470 (500)
..++..++..++.- +..+..++..+.| +.+++.+.++..+..+ +...||.+++++.+..
T Consensus 149 ~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 149 RWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp HHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 88888877665442 2336778887776 7777777777666553 3457999998877654
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.29 E-value=5.7e-07 Score=85.71 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
++++++||||||||++|.++|+.+...++
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 57999999999999999999998865443
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.15 E-value=1.2e-05 Score=101.60 Aligned_cols=125 Identities=19% Similarity=0.251 Sum_probs=90.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIG 344 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~ 344 (500)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+. ..+..+|..+... .+..++|||+.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------- 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------- 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS---------
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC---------
Confidence 367899999999999999999999999999999875432 2344455555433 368899999998
Q ss_pred CCChHHHHHHHHHHHHh-------------c-C--CCCCCCeEEEEeeCC----CCCCchhhcCCCCcceEEEecCCCHH
Q 010809 345 GGNDEREQTLNQLLTEM-------------D-G--FEGNTGIIVIAATNR----ADILDSALLRPGRFDRQVTVDVPDIR 404 (500)
Q Consensus 345 ~~~~e~~~~L~~LL~em-------------d-~--~~~~~~viVIaaTN~----~~~Ld~aLlrpgRfdr~I~v~~Pd~~ 404 (500)
..+....+.+.+..+ + | +.-+..+.|++|.|. ...|+++|+. || |.+.+..||.+
T Consensus 669 --~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~~ 743 (3245)
T 3vkg_A 669 --EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDRE 743 (3245)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCHH
Confidence 344444444433311 1 1 222446788888884 4579999999 99 68999999999
Q ss_pred HHHHHH
Q 010809 405 GRTEIL 410 (500)
Q Consensus 405 eR~~IL 410 (500)
...+|+
T Consensus 744 ~i~ei~ 749 (3245)
T 3vkg_A 744 MIAQVM 749 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1e-05 Score=74.96 Aligned_cols=28 Identities=36% Similarity=0.608 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
.+.|.||+|+|||||++.+++..++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765544
No 110
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.11 E-value=5.9e-06 Score=77.32 Aligned_cols=39 Identities=21% Similarity=0.088 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
.....-++|+||||+|||++++.+|...+.++++++..+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 334446899999999999999999986677888888754
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.02 E-value=8.4e-06 Score=80.57 Aligned_cols=26 Identities=42% Similarity=0.561 Sum_probs=23.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGV 290 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~ 290 (500)
++++|+||||||||++|+++|+....
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47999999999999999999997643
No 112
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.00 E-value=0.00011 Score=79.50 Aligned_cols=174 Identities=16% Similarity=0.141 Sum_probs=97.4
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechhh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSEF 300 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~se~ 300 (500)
.....++|.+...++|.+.+.... ..++-+.|+||+|+|||+||+.++... ...++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 345678999998888877664321 123468999999999999999997532 122444443321
Q ss_pred -----HHhh------hhh----------hhhHHHHHHHHH-Hh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHH
Q 010809 301 -----VEMF------VGV----------GASRVRDLFKKA-KE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (500)
Q Consensus 301 -----~~~~------vG~----------~~~~vr~lf~~a-~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (500)
...+ .+. ....+...+... .. ..|.+|+||+++.. . .
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------------~----~ 250 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------------W----V 250 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------------H----H
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------------H----H
Confidence 1111 110 001122222222 22 26899999999753 0 1
Q ss_pred HHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEe---cCCCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCC
Q 010809 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTV---DVPDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPG 434 (500)
Q Consensus 358 L~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v---~~Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G 434 (500)
+.. + ..+..||.||........ . . ...+.+ +..+.++-.+++..++.............+++.+.|
T Consensus 251 l~~---l--~~~~~ilvTsR~~~~~~~-~-~----~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G 319 (591)
T 1z6t_A 251 LKA---F--DSQCQILLTTRDKSVTDS-V-M----GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKG 319 (591)
T ss_dssp HHT---T--CSSCEEEEEESCGGGGTT-C-C----SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTT
T ss_pred HHH---h--cCCCeEEEECCCcHHHHh-c-C----CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCC
Confidence 222 2 234567777765432111 1 1 123344 467888888999887754221112346788999998
Q ss_pred CcHHHHHHH
Q 010809 435 FSGADLANL 443 (500)
Q Consensus 435 ~sgadL~~l 443 (500)
.+--|..+
T Consensus 320 -~PLal~~~ 327 (591)
T 1z6t_A 320 -SPLVVSLI 327 (591)
T ss_dssp -CHHHHHHH
T ss_pred -CcHHHHHH
Confidence 55444433
No 113
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=2.1e-05 Score=74.70 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=49.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh--c-------CCCEEEEechhh------HHh--hhhhh---------------
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE--A-------GVPFFSISGSEF------VEM--FVGVG--------------- 308 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e--~-------~~pfi~is~se~------~~~--~vG~~--------------- 308 (500)
.+...-++|+||||+|||+|++.+|.. . +...+++++.+- ... -.+..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 334446899999999999999999984 2 456888877551 110 01110
Q ss_pred hh----HHHHHHHHHHhCCCeEEEEcCcchhhh
Q 010809 309 AS----RVRDLFKKAKENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 309 ~~----~vr~lf~~a~~~~p~IIfIDEID~l~~ 337 (500)
.. .+..+.+.+....|.+|+|||+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 01 122233344456789999999998864
No 114
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.98 E-value=4.3e-05 Score=72.79 Aligned_cols=127 Identities=21% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHH--Hh--cCCCEEEEechhhHHhh------hhh------------------------
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIA--GE--AGVPFFSISGSEFVEMF------VGV------------------------ 307 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA--~e--~~~pfi~is~se~~~~~------vG~------------------------ 307 (500)
+...-+.|.||+|+|||+|++.++ .. .+...++++..+..... ++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVGLP 107 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC---------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEccccccccc
Confidence 334468999999999999999998 32 35556666543221110 000
Q ss_pred ------------hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 308 ------------GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 308 ------------~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.......+...+....|.+|+|||+-+...... ......+.+..++..+.. .+..||.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~-----d~~~~~~~l~~l~~~l~~----~g~tii~v 178 (251)
T 2ehv_A 108 SEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLE-----EERKIREVLLKLNTILLE----MGVTTILT 178 (251)
T ss_dssp ----------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSS-----SGGGHHHHHHHHHHHHHH----HCCEEEEE
T ss_pred cccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcC-----CHHHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 011122233333456799999999988764321 123445556777776642 34567777
Q ss_pred eCCCCCCc-----hhhcCCCCc-ceEEEec
Q 010809 376 TNRADILD-----SALLRPGRF-DRQVTVD 399 (500)
Q Consensus 376 TN~~~~Ld-----~aLlrpgRf-dr~I~v~ 399 (500)
|...+... ..+.. -+ |+++.+.
T Consensus 179 tH~~~~~~~~~~~~~i~~--~~aD~vi~l~ 206 (251)
T 2ehv_A 179 TEAPDPQHGKLSRYGIEE--FIARGVIVLD 206 (251)
T ss_dssp ECCC----CCSSSSSCGG--GGCSEEEEEE
T ss_pred ECCCCCCcccccccChhh--EeeeEEEEEe
Confidence 76654431 12222 35 7766664
No 115
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.97 E-value=2.3e-05 Score=82.91 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=70.7
Q ss_pred ccccccCCCCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc---CC-CEE
Q 010809 218 AKFQMEPNTGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA---GV-PFF 293 (500)
Q Consensus 218 ~~~~~~~~~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~---~~-pfi 293 (500)
.+-|.+++.+.+|+++ .+++++.+..++.++.... ..++|.|+||||||+++.+++..+ +. .++
T Consensus 11 ~~~~~~~~~p~~~~~L--n~~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il 78 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDL--TEGQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGII 78 (459)
T ss_dssp ----------CCSSCC--CHHHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCccccCCCccccC--CHHHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEE
Confidence 3457788888999987 4566666666666665432 169999999999999999998765 33 455
Q ss_pred EEechhhHH----hhhhhhhhHHHHHHHHH----------------HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHH
Q 010809 294 SISGSEFVE----MFVGVGASRVRDLFKKA----------------KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQT 353 (500)
Q Consensus 294 ~is~se~~~----~~vG~~~~~vr~lf~~a----------------~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~ 353 (500)
.+..+.-.. ...+.....+..++... ......+|+|||+..+. ...
T Consensus 79 ~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~--------------~~~ 144 (459)
T 3upu_A 79 LAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYD--------------RKL 144 (459)
T ss_dssp EEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCC--------------HHH
T ss_pred EecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCC--------------HHH
Confidence 554432211 11222223333333210 01134699999998772 224
Q ss_pred HHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 354 LNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 354 L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
+..|+..+. ....+++++-.+.
T Consensus 145 ~~~l~~~~~---~~~~~~~vGD~~Q 166 (459)
T 3upu_A 145 FKILLSTIP---PWCTIIGIGDNKQ 166 (459)
T ss_dssp HHHHHHHSC---TTCEEEEEECTTS
T ss_pred HHHHHHhcc---CCCEEEEECCHHH
Confidence 455555443 3445666665544
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.97 E-value=4.3e-05 Score=71.66 Aligned_cols=37 Identities=27% Similarity=0.423 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.....++|+||+|+|||+|++.++... +.++++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 334468999999999999999998653 5677776643
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.94 E-value=1.8e-05 Score=79.98 Aligned_cols=115 Identities=21% Similarity=0.210 Sum_probs=66.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhh--HHh---h---hhhh---------------
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEM---F---VGVG--------------- 308 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~--~~~---~---vG~~--------------- 308 (500)
.+...-++|+||||+|||++|..+|..+ +.++++++...- .+. + .|..
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 3444468999999999999999998865 567888887652 111 0 1110
Q ss_pred hh----HHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 309 AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 309 ~~----~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.. .+..+....+. ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||.+.
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~n 255 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGR-ENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTT-TSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEc
Confidence 01 12233333444 6789999999999975432211 11223344556665555443333345555553
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.92 E-value=2.7e-05 Score=80.38 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=64.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh----hhh-----------hhhHHHHHHHHH-Hh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV-----------GASRVRDLFKKA-KE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~----vG~-----------~~~~vr~lf~~a-~~ 321 (500)
.+...-++|+||||+|||+||..+|.++ +.++++++...-.+.. .|. ....+.+.++.. +.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 3444568999999999999999997754 6788888876422211 111 111222233322 34
Q ss_pred CCCeEEEEcCcchhhhccCC-CCCCC-C-hHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 322 NAPCIVFVDEIDAVGRQRGT-GIGGG-N-DEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~~r~~-~~~~~-~-~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
..+++|+||.+..+...... +..+. + ....+.+.+++..+..+....++.||++.
T Consensus 151 ~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 56889999999999642211 00000 0 01224455555555433334455665553
No 119
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.90 E-value=1.1e-05 Score=82.62 Aligned_cols=77 Identities=19% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh----hhhhhh--------hHHHHHHHH----HHh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVGA--------SRVRDLFKK----AKE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~----~vG~~~--------~~vr~lf~~----a~~ 321 (500)
.....-++|+||||+|||+||..++..+ +.++++++..+-.+. -.|... ..+.++++. ++.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRS 137 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhc
Confidence 3334468999999999999999998654 667888876542211 112110 112222222 235
Q ss_pred CCCeEEEEcCcchhhh
Q 010809 322 NAPCIVFVDEIDAVGR 337 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~ 337 (500)
..|.+|+||++..+..
T Consensus 138 ~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 138 GALDIIVIDSVAALVP 153 (349)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred CCCCEEEEcChHhhcc
Confidence 5689999999999863
No 120
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.89 E-value=0.00033 Score=81.46 Aligned_cols=169 Identities=15% Similarity=0.134 Sum_probs=100.2
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhc-------CCCEEEEechh-
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSISGSE- 299 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~-------~~pfi~is~se- 299 (500)
....+++|.++..++|.+.+.... ..++-+.|+|+.|+|||+||+.++... ...++.++.+.
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 345679999998888887764221 123468899999999999999997752 12234444332
Q ss_pred ----hHHhh------hh----------hhhhHHHHHHHHHHhC--CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHH
Q 010809 300 ----FVEMF------VG----------VGASRVRDLFKKAKEN--APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQL 357 (500)
Q Consensus 300 ----~~~~~------vG----------~~~~~vr~lf~~a~~~--~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~L 357 (500)
....+ .+ .....+.+.+...... .+.+|+||+++...
T Consensus 191 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--------------------- 249 (1249)
T 3sfz_A 191 DKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--------------------- 249 (1249)
T ss_dssp CHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH---------------------
T ss_pred CchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH---------------------
Confidence 11100 00 0112223333333233 37899999997641
Q ss_pred HHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecC-CCHHHHHHHHHHHhcCCCCCccccHHHHHHhCCCC
Q 010809 358 LTEMDGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDV-PDIRGRTEILKVHGSNKKFDADVSLDVIAMRTPGF 435 (500)
Q Consensus 358 L~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~-Pd~~eR~~IL~~~l~~~~l~~dvdl~~la~~t~G~ 435 (500)
.++.+ ..+..||.||......... . .....+.++. .+.++-.++|..+..............+++.+.|.
T Consensus 250 --~~~~~--~~~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl 320 (1249)
T 3sfz_A 250 --VLKAF--DNQCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS 320 (1249)
T ss_dssp --HHTTT--CSSCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC
T ss_pred --HHHhh--cCCCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC
Confidence 12222 2345777788765443211 1 2234577775 88888889998877544333333477899999984
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.89 E-value=2.3e-05 Score=80.61 Aligned_cols=114 Identities=20% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh----hhhhh--------hhHHHHHHHHH----HhC
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGVG--------ASRVRDLFKKA----KEN 322 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~----~vG~~--------~~~vr~lf~~a----~~~ 322 (500)
....-++|+||||+|||+|+..++..+ +.++++++..+.... -.|.. ...+.+++..+ +..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 334468999999999999999998764 678888887643211 01110 11222333222 346
Q ss_pred CCeEEEEcCcchhhh-ccCCCCCCCC--hHHHHHHHHHHHHhcCCCCCCCeEEEEe
Q 010809 323 APCIVFVDEIDAVGR-QRGTGIGGGN--DEREQTLNQLLTEMDGFEGNTGIIVIAA 375 (500)
Q Consensus 323 ~p~IIfIDEID~l~~-~r~~~~~~~~--~e~~~~L~~LL~emd~~~~~~~viVIaa 375 (500)
.+.+++||.+..+.. ..-.+..+.. ....+.+.+++..+..+....++.||.+
T Consensus 139 ~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tVI~i 194 (356)
T 3hr8_A 139 VVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVVIFT 194 (356)
T ss_dssp CCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEEEEE
T ss_pred CCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 789999999998864 2211111111 1234556666655544433445555554
No 122
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.84 E-value=4.6e-05 Score=69.05 Aligned_cols=40 Identities=15% Similarity=0.367 Sum_probs=34.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
|+.++|+|+||+||||++++++..++.+++.++..++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~ 42 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEA 42 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhh
Confidence 4579999999999999999999999999998887766543
No 123
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.83 E-value=5.6e-05 Score=71.04 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE 299 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se 299 (500)
.+...-+.|.||+|+|||+|++.+++.. +...++++..+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3334458999999999999999999844 22367776643
No 124
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.79 E-value=4.7e-05 Score=77.64 Aligned_cols=114 Identities=22% Similarity=0.219 Sum_probs=64.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhh--HHh---h---hhhh---------------h
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEF--VEM---F---VGVG---------------A 309 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~--~~~---~---vG~~---------------~ 309 (500)
+...-++|+||||+|||++|..+|..+ +.++++++...- .+. + .|.. .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 333458999999999999999998863 567888887652 110 0 1110 1
Q ss_pred hH----HHHHHHHHHh--CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEee
Q 010809 310 SR----VRDLFKKAKE--NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAAT 376 (500)
Q Consensus 310 ~~----vr~lf~~a~~--~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaT 376 (500)
.. +..+...++. ..+.+|+||.+..+....-.+. +...++++.+.+++..+..+....++.||.+.
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~-g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~n 271 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGR-GELAERQQKLAQMLSRLQKISEEYNVAVFVTN 271 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGG-GCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhccc-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 11 1122233444 6789999999999975421110 11123334455555554443333455565554
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.78 E-value=3.9e-05 Score=93.53 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=76.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh----hhh--------hhhHHHHHHHHHHh---
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV--------GASRVRDLFKKAKE--- 321 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~----vG~--------~~~~vr~lf~~a~~--- 321 (500)
|..+...++|.|+||+|||+||..+|..+ +.+++++++.+-.+.. .|. .+..+.++++.++.
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 35566679999999999999999998865 5579999987655443 221 11234555555543
Q ss_pred -CCCeEEEEcCcchhhh-ccCCC-CCCCC-hHHHHHHHHHHHHhcCCCCCCCeEEEEeeC
Q 010809 322 -NAPCIVFVDEIDAVGR-QRGTG-IGGGN-DEREQTLNQLLTEMDGFEGNTGIIVIAATN 377 (500)
Q Consensus 322 -~~p~IIfIDEID~l~~-~r~~~-~~~~~-~e~~~~L~~LL~emd~~~~~~~viVIaaTN 377 (500)
..|++||||.++.+.. ....+ .+... .-..+.+.+++..+..+....++.||++..
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 6799999999999975 22111 01111 122344777777776665566777777653
No 126
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.74 E-value=3.5e-05 Score=79.24 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=50.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh----hhhh-----------hhhHHHHHHHHH-Hh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM----FVGV-----------GASRVRDLFKKA-KE 321 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~----~vG~-----------~~~~vr~lf~~a-~~ 321 (500)
.+...-++|+|+||+|||+||..+|.++ +.++++++..+-.+. -.|. ....+.++++.. +.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3444568999999999999999997754 678888887432111 1111 112233333332 34
Q ss_pred CCCeEEEEcCcchhhh
Q 010809 322 NAPCIVFVDEIDAVGR 337 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~ 337 (500)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6788999999999864
No 127
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.72 E-value=2.2e-05 Score=73.08 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=38.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHhh--------hhh-----hhhHHHHHHHHHHhCCCeEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEMF--------VGV-----GASRVRDLFKKAKENAPCIVFV 329 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~~--------vG~-----~~~~vr~lf~~a~~~~p~IIfI 329 (500)
-.+++||+|+|||+++..++.. .+.+++.+.... ...+ .|. ......++++.+. ..+.+|+|
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~-d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviI 82 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI-DSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFI 82 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC------CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc-ccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEE
Confidence 4789999999999999666654 366665553221 0000 000 0111233333332 24579999
Q ss_pred cCcchh
Q 010809 330 DEIDAV 335 (500)
Q Consensus 330 DEID~l 335 (500)
||++.+
T Consensus 83 DE~Q~~ 88 (184)
T 2orw_A 83 DEVQFF 88 (184)
T ss_dssp CCGGGS
T ss_pred ECcccC
Confidence 999987
No 128
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.70 E-value=5.5e-05 Score=79.00 Aligned_cols=118 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechhhH-H-------hhhhhh--------------
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSEFV-E-------MFVGVG-------------- 308 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se~~-~-------~~vG~~-------------- 308 (500)
|.....-+.|+||||+|||+|++.+|-.. +...++++..+.. . .-+|..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 34444468999999999999999776332 3457888775421 0 001110
Q ss_pred -----hhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 309 -----ASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 309 -----~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
...+..+...+....|.+|+||++-.+....-.+ .++..++++.+.+++..+..+....++.||.++..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv 327 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRLADQFGVAVVVTNQV 327 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEee
Confidence 0111222333345678999999998886543221 12223445555555555544433335566666543
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.68 E-value=0.00022 Score=67.59 Aligned_cols=38 Identities=32% Similarity=0.405 Sum_probs=29.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEech
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~s 298 (500)
.....-++|+||||+|||+++..+|.. .+.++++++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 344446899999999999999888664 36678887765
No 130
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.65 E-value=7.2e-05 Score=75.10 Aligned_cols=114 Identities=19% Similarity=0.222 Sum_probs=64.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------------C----CCEEEEechhh--HHhh------hhhh-----
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------------G----VPFFSISGSEF--VEMF------VGVG----- 308 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---------------~----~pfi~is~se~--~~~~------vG~~----- 308 (500)
.+...-++|+||||+|||++|..+|..+ + .++++++..+- .+.. .|..
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL 174 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh
Confidence 3334468999999999999999998752 2 57888887642 1210 1110
Q ss_pred ----------hh----HHHHHHHHHHh-CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEE
Q 010809 309 ----------AS----RVRDLFKKAKE-NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVI 373 (500)
Q Consensus 309 ----------~~----~vr~lf~~a~~-~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVI 373 (500)
.. .+..+....+. ..+.+|+||.+..+......+. +...++++.+.+++..+..+....++.||
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~-~~~~~r~~~~~~~~~~L~~la~~~~~~vi 253 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR-GKLAERQQKLGRHMATLNKLADLFNCVVL 253 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT-TSHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 01 11123333344 5678999999999975422111 11223344556665555444334455555
Q ss_pred Ee
Q 010809 374 AA 375 (500)
Q Consensus 374 aa 375 (500)
.+
T Consensus 254 ~~ 255 (322)
T 2i1q_A 254 VT 255 (322)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.64 E-value=0.00012 Score=74.81 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=30.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---------CCCEEEEechh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---------GVPFFSISGSE 299 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---------~~pfi~is~se 299 (500)
.+...-+.|+||||+|||+|++.++... +..+++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3344468999999999999999999876 24567887654
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.64 E-value=0.00015 Score=69.77 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=44.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH---hh---hhhh-----hhHHHHHHHHHHh----CCCeEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE---MF---VGVG-----ASRVRDLFKKAKE----NAPCIV 327 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~---~~---vG~~-----~~~vr~lf~~a~~----~~p~II 327 (500)
-++++||+|+|||+++..++..+ +..++.++...-.. .. .|.. .....++++.++. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 46789999999999998887655 66777664332100 00 1110 1123456666654 347899
Q ss_pred EEcCcchh
Q 010809 328 FVDEIDAV 335 (500)
Q Consensus 328 fIDEID~l 335 (500)
+|||++.+
T Consensus 94 iIDEaQ~l 101 (223)
T 2b8t_A 94 GIDEVQFF 101 (223)
T ss_dssp EECSGGGS
T ss_pred EEecCccC
Confidence 99999887
No 133
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.61 E-value=0.0013 Score=70.87 Aligned_cols=170 Identities=13% Similarity=0.128 Sum_probs=95.5
Q ss_pred cCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH----hcCCCE---EEEechh-----hH
Q 010809 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG----EAGVPF---FSISGSE-----FV 301 (500)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~----e~~~pf---i~is~se-----~~ 301 (500)
+|.++.++++.+.+..-. ...++-|.|+|+.|+|||+||+.+++ .....| +.++.+. ..
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 499999888887774321 11234689999999999999999996 232222 2233322 11
Q ss_pred H---hh---hhhh-------------hhHHHHHHHHHHhCC-CeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHh
Q 010809 302 E---MF---VGVG-------------ASRVRDLFKKAKENA-PCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEM 361 (500)
Q Consensus 302 ~---~~---vG~~-------------~~~vr~lf~~a~~~~-p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~em 361 (500)
. .. ++.. ...+...+....... +++|+||+++.. .+. .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~---------------~~~--~~~~-~ 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE---------------ETI--RWAQ-E 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH---------------HHH--HHHH-H
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc---------------hhh--cccc-c
Confidence 1 11 1111 011233344443443 799999999774 111 1111 1
Q ss_pred cCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHHHhcCCCCCccc--cHHHHHHhCCCCcHHH
Q 010809 362 DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQVTVDVPDIRGRTEILKVHGSNKKFDADV--SLDVIAMRTPGFSGAD 439 (500)
Q Consensus 362 d~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~~l~~~~l~~dv--dl~~la~~t~G~sgad 439 (500)
.+..||.||....... . .. ..+..+.++..+.++-.++|..++...+..++. ....+++.+.| .|--
T Consensus 264 ------~gs~ilvTTR~~~v~~-~-~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~G-lPLA 332 (549)
T 2a5y_B 264 ------LRLRCLVTTRDVEISN-A-AS--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSG-NPAT 332 (549)
T ss_dssp ------TTCEEEEEESBGGGGG-G-CC--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTT-CHHH
T ss_pred ------CCCEEEEEcCCHHHHH-H-cC--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCC-ChHH
Confidence 3456777776543211 1 11 133568999999999999999885443321111 24567777877 4433
Q ss_pred HH
Q 010809 440 LA 441 (500)
Q Consensus 440 L~ 441 (500)
|+
T Consensus 333 l~ 334 (549)
T 2a5y_B 333 LM 334 (549)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 134
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.60 E-value=0.0011 Score=63.91 Aligned_cols=122 Identities=27% Similarity=0.354 Sum_probs=69.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech--------hhHHhhh----------hh--hhhHHHHHHHHHHhC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS--------EFVEMFV----------GV--GASRVRDLFKKAKEN 322 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s--------e~~~~~v----------G~--~~~~vr~lf~~a~~~ 322 (500)
.+++.|+||+|||+++-.+|..+ |..+..++.. .+..... +. .+..+..++. .
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~----~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK----A 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----H
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----c
Confidence 69999999999999999887754 6666655442 2221110 00 1123333322 3
Q ss_pred CCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC------------------CCCCch
Q 010809 323 APCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR------------------ADILDS 384 (500)
Q Consensus 323 ~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~------------------~~~Ld~ 384 (500)
.|.+++|||+-..-.. ...+...-+-+..++. .++=|++|+|. .+.++.
T Consensus 84 ~pdlvIVDElG~~~~~-----~~r~~~~~qDV~~~l~--------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 84 APSLVLVDELAHTNAP-----GSRHTKRWQDIQELLA--------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp CCSEEEESCTTCBCCT-----TCSSSBHHHHHHHHHH--------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred CCCEEEEeCCCCCCcc-----cchhHHHHHHHHHHHc--------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 5889999998553111 1112223333333332 34567788872 134555
Q ss_pred hhcCCCCcceEEEecCCCHHHH
Q 010809 385 ALLRPGRFDRQVTVDVPDIRGR 406 (500)
Q Consensus 385 aLlrpgRfdr~I~v~~Pd~~eR 406 (500)
.++. +.|.+..++.|..+-+
T Consensus 151 ~~~~--~a~~v~lvD~~p~~l~ 170 (228)
T 2r8r_A 151 WVLQ--EAFDLVLIDLPPRELL 170 (228)
T ss_dssp HHHH--TCSEEEEBCCCHHHHH
T ss_pred HHHh--hCCeEEEecCCHHHHH
Confidence 5665 6777778888876633
No 135
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.60 E-value=0.00053 Score=72.43 Aligned_cols=152 Identities=20% Similarity=0.256 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCC--------CCCCeEEEEee-----C
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFE--------GNTGIIVIAAT-----N 377 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~--------~~~~viVIaaT-----N 377 (500)
..++.++.+..+ .|+++||||.++++.+. .+++...+.....||..+|+.. ...++++||+. |
T Consensus 240 ~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~ 315 (444)
T 1g41_A 240 LKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVAR 315 (444)
T ss_dssp HHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCC
T ss_pred HHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCC
Confidence 345555555333 49999999999865432 2334444556677888887632 24578999987 4
Q ss_pred CCCCCchhhcCCCCcceEEEecCCCHHHHHHHHHH---H----------hcCCCCC-ccccHHHHHH-------hCCCCc
Q 010809 378 RADILDSALLRPGRFDRQVTVDVPDIRGRTEILKV---H----------GSNKKFD-ADVSLDVIAM-------RTPGFS 436 (500)
Q Consensus 378 ~~~~Ld~aLlrpgRfdr~I~v~~Pd~~eR~~IL~~---~----------l~~~~l~-~dvdl~~la~-------~t~G~s 436 (500)
..+ +-|.|+. ||..++.++.++.++..+|+.. + +.+..+. .+..+..+++ .|...-
T Consensus 316 ~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~G 392 (444)
T 1g41_A 316 PSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIG 392 (444)
T ss_dssp GGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCG
T ss_pred hhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCC
Confidence 444 5578888 9998899999999999999841 1 1122211 1122444544 344445
Q ss_pred HHHHHHHHHHHHHHHHHc----C--CCCcCHHHHHHHHH
Q 010809 437 GADLANLLNEAAILAGRR----G--KAAISSKEIDDSID 469 (500)
Q Consensus 437 gadL~~lv~eAa~~A~r~----~--~~~It~~d~~~Ai~ 469 (500)
.+.|++++..++.-+..+ . .-.||.+.+++.+.
T Consensus 393 aR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 393 ARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALG 431 (444)
T ss_dssp GGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcC
Confidence 666666666555443322 1 12477777776554
No 136
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.56 E-value=0.00039 Score=65.89 Aligned_cols=38 Identities=32% Similarity=0.281 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHh----cCCCEEEEech
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGE----AGVPFFSISGS 298 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e----~~~pfi~is~s 298 (500)
.+...-++++|+||+|||++|..+|.+ .+.++++++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 344446899999999999999887543 37788888764
No 137
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.55 E-value=5.8e-05 Score=90.95 Aligned_cols=78 Identities=22% Similarity=0.315 Sum_probs=55.4
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh----hhh--------hhhHHHHHHHHHH----
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF----VGV--------GASRVRDLFKKAK---- 320 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~----vG~--------~~~~vr~lf~~a~---- 320 (500)
|..++..++|+||||+|||+||..+|.++ +.++++++..+-.+.. .|. ....+.++++.++
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 45666689999999999999999998765 5689998876544221 221 1123445555543
Q ss_pred hCCCeEEEEcCcchhhh
Q 010809 321 ENAPCIVFVDEIDAVGR 337 (500)
Q Consensus 321 ~~~p~IIfIDEID~l~~ 337 (500)
...|++|+||.++.+..
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 47899999999999863
No 138
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.50 E-value=0.00027 Score=70.26 Aligned_cols=60 Identities=28% Similarity=0.364 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 237 DEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 237 de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
++..+.+.+++..+... ......|.-++|.||||+||||+|+.++.+.+..++.+++..+
T Consensus 10 ~~~~~~~~~~~~~~l~~----~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQG----KKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp HHHHHHHHHHHHHHHTT----CCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred HHHHHHHHHHHHHHhcc----ccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 44455555555543221 1233456779999999999999999999988555677777555
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.47 E-value=0.00032 Score=68.02 Aligned_cols=40 Identities=30% Similarity=0.463 Sum_probs=34.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
...|..++|.|+||+|||++|+.++..++.+++.+++..+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4456789999999999999999999999877777887766
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.46 E-value=6.4e-05 Score=68.62 Aligned_cols=38 Identities=21% Similarity=0.328 Sum_probs=31.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
++.++|+||||+|||++++.+|..++.+|+. ..++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~--~d~~~~~ 42 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYD--SDKEIEK 42 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 4579999999999999999999999998874 3444443
No 141
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.45 E-value=0.00019 Score=72.64 Aligned_cols=72 Identities=14% Similarity=0.240 Sum_probs=47.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEechhhHHh----hhhhh--------hhHHHHH----HHHH---Hh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISGSEFVEM----FVGVG--------ASRVRDL----FKKA---KE 321 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~se~~~~----~vG~~--------~~~vr~l----f~~a---~~ 321 (500)
-++++||||+|||+|+..++.++ +..++++++.+-... -.|.. +....++ .+.+ +.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 46899999999999988875543 667888887642211 11211 1122233 2222 45
Q ss_pred CCCeEEEEcCcchhhh
Q 010809 322 NAPCIVFVDEIDAVGR 337 (500)
Q Consensus 322 ~~p~IIfIDEID~l~~ 337 (500)
..|.+|+||-|.++.+
T Consensus 110 ~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 110 GEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TCCEEEEEECSTTCBC
T ss_pred cCceEEEEeccccccc
Confidence 6799999999999974
No 142
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.44 E-value=0.00023 Score=69.87 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=27.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-------------CCCEEEEechh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-------------GVPFFSISGSE 299 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-------------~~pfi~is~se 299 (500)
..-++|+||+|+|||+|++.++..+ +.++.+++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence 3468999999999999999998643 24677777654
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.38 E-value=0.00013 Score=66.73 Aligned_cols=34 Identities=35% Similarity=0.623 Sum_probs=29.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
...|.-++|.|+||+||||+++.++..++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3456679999999999999999999999988765
No 144
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.33 E-value=0.00012 Score=68.22 Aligned_cols=38 Identities=37% Similarity=0.503 Sum_probs=31.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
++.++|.||||+|||++++++|+.++.+++. ..++...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~--~d~~~~~ 62 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFID--LDWYIEE 62 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEc--chHHHHH
Confidence 4479999999999999999999999998864 4455443
No 145
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.30 E-value=0.0025 Score=69.24 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=56.2
Q ss_pred eEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC--CCchhhcCCCCcceEEEecCCC
Q 010809 325 CIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDVPD 402 (500)
Q Consensus 325 ~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~--~Ld~aLlrpgRfdr~I~v~~Pd 402 (500)
.+|+|||++.+.... ..+....+.++..+- ..-++.+|.+|.+|. .++..++. -|..+|.+...+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s 411 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSS 411 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHh--hhccEEEEEcCC
Confidence 589999999886532 234556666666643 356899999999987 78888877 688889999999
Q ss_pred HHHHHHHHH
Q 010809 403 IRGRTEILK 411 (500)
Q Consensus 403 ~~eR~~IL~ 411 (500)
..+...||.
T Consensus 412 ~~Dsr~ILd 420 (574)
T 2iut_A 412 KIDSRTILD 420 (574)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHhcC
Confidence 888877774
No 146
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.29 E-value=0.00041 Score=73.24 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=30.5
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
|.....-++|.|+||+|||+++..+|..+ +.++++++..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 44444568999999999999999997743 6688888754
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.0002 Score=65.54 Aligned_cols=40 Identities=33% Similarity=0.483 Sum_probs=33.5
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
..+.-+.|.||||+||||+++.+++..+.+.+.+++.++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 46 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchh
Confidence 3345689999999999999999999888888888876654
No 148
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.26 E-value=0.0012 Score=63.45 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=30.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~s-e~~~ 302 (500)
.++++||+|+|||.+|.+++...+.+++.+... ++..
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~ 147 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHH
Confidence 489999999999999999998888787777654 4443
No 149
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.23 E-value=0.00016 Score=65.96 Aligned_cols=36 Identities=31% Similarity=0.559 Sum_probs=30.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.|+|+|+||+|||++|+.+|..++.+++. ..++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~D~~~~~ 39 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD--TDVAIEQ 39 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe--CchHHHH
Confidence 58999999999999999999999998764 4454443
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.21 E-value=0.00065 Score=66.16 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=33.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~ 303 (500)
+.-|+|.|+||+|||++|+.++.. .+.+++.++...+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 346899999999999999999997 7888887777666543
No 151
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.21 E-value=0.00062 Score=71.63 Aligned_cols=39 Identities=28% Similarity=0.175 Sum_probs=30.6
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
|..+..-++|.|+||+|||++|..+|... +.++++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44444568999999999999999987643 6788888764
No 152
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.20 E-value=0.00046 Score=68.13 Aligned_cols=37 Identities=19% Similarity=0.102 Sum_probs=28.3
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~ 297 (500)
.....-++|.||||+|||+|++.+|... |.++++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3334468999999999999999998754 446766654
No 153
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.19 E-value=0.00022 Score=63.71 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
-++|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4899999999999999999999998886544
No 154
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.17 E-value=0.00027 Score=63.59 Aligned_cols=37 Identities=27% Similarity=0.667 Sum_probs=29.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..+.|+||+|+||||+++.+|+.++.+++ ++.++..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 346999999999999999999999987655 4444443
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00023 Score=64.80 Aligned_cols=31 Identities=39% Similarity=0.762 Sum_probs=27.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
++.|+|+|+||+|||+++++++..++.+++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4579999999999999999999999987764
No 156
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.13 E-value=0.00023 Score=65.36 Aligned_cols=31 Identities=42% Similarity=0.696 Sum_probs=26.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh-cCCCEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGE-AGVPFFS 294 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e-~~~pfi~ 294 (500)
+..++|+|+||+|||++++.+|.. .+.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 346999999999999999999998 6866654
No 157
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.13 E-value=0.00029 Score=65.33 Aligned_cols=34 Identities=41% Similarity=0.625 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
..|..|+|.|+||+|||++|+.++..++.+++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 3455799999999999999999999999887543
No 158
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.13 E-value=0.00027 Score=64.08 Aligned_cols=35 Identities=29% Similarity=0.584 Sum_probs=29.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.|+||+|||++|+++|..++.+++. ..++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d--~d~~~~ 40 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD--SDFLIE 40 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc--ccHHHH
Confidence 58999999999999999999999988764 444443
No 159
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.13 E-value=0.00041 Score=71.23 Aligned_cols=67 Identities=27% Similarity=0.361 Sum_probs=43.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec-hhhH---------HhhhhhhhhHHHHHHHHHHhCCCeEEEEcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG-SEFV---------EMFVGVGASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~----~~pfi~is~-se~~---------~~~vG~~~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
.+++.||+|+||||+.+++++.. +..++.+.- .++. ...++.....+.+.+..+....|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 48999999999999999998864 233332211 1110 001122223455677788888999999999
Q ss_pred c
Q 010809 332 I 332 (500)
Q Consensus 332 I 332 (500)
+
T Consensus 205 p 205 (356)
T 3jvv_A 205 M 205 (356)
T ss_dssp C
T ss_pred C
Confidence 8
No 160
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.00051 Score=61.76 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=27.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHH-hcCCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAG-EAGVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~-e~~~pfi~is~se~ 300 (500)
|.-++|.|+||+||||+|+.++. ..+ +..++...+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT--EEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC--cEEecHHHH
Confidence 55789999999999999999998 455 444554443
No 161
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.11 E-value=0.00026 Score=63.66 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=30.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.++|.|+||||||++++.+|..++.|++. ..++...
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id--~D~~~~~ 44 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD--TDMIISE 44 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE--HHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--ChHHHHH
Confidence 79999999999999999999999999875 3444433
No 162
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.09 E-value=0.00036 Score=63.41 Aligned_cols=39 Identities=26% Similarity=0.477 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.+|+-++|.|+||+|||++++.++..++.+++ +..++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i--~~d~~~~ 42 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLLR 42 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEe--eHHHHHH
Confidence 34667999999999999999999999987665 4445543
No 163
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.06 E-value=0.0026 Score=68.36 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=52.7
Q ss_pred Ce-EEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCC--CCchhhcCCCCcceEEEecC
Q 010809 324 PC-IVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRAD--ILDSALLRPGRFDRQVTVDV 400 (500)
Q Consensus 324 p~-IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~--~Ld~aLlrpgRfdr~I~v~~ 400 (500)
|. +|+|||+..+.... ..+.+..+..|...- ..-++.+|.+|.+++ .++..++. -|..+|.+..
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv 363 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTV 363 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECC
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHh--hcCCeEEEEc
Confidence 54 89999998875421 123344444444432 234788999999887 68877776 6777889999
Q ss_pred CCHHHHHHHHH
Q 010809 401 PDIRGRTEILK 411 (500)
Q Consensus 401 Pd~~eR~~IL~ 411 (500)
.+..+.+.++.
T Consensus 364 ~s~~dsr~ilg 374 (512)
T 2ius_A 364 SSKIDSRTILD 374 (512)
T ss_dssp SSHHHHHHHHS
T ss_pred CCHHHHHHhcC
Confidence 99998888875
No 164
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00041 Score=63.17 Aligned_cols=37 Identities=30% Similarity=0.514 Sum_probs=30.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|.-|+|.|+||+||||+|+.++..++.+++ +..++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~~ 39 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELLR 39 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHHH
Confidence 456999999999999999999999987764 5555543
No 165
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.03 E-value=0.00057 Score=62.10 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=32.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
.+.-+.|.|++|+||||+++.+++.+ |.|++.+++..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34568999999999999999999987 999998876544
No 166
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.01 E-value=0.00092 Score=72.87 Aligned_cols=96 Identities=25% Similarity=0.356 Sum_probs=55.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhhHHh----hhhhhhhHHHHHHHHH---------HhCCCeEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEFVEM----FVGVGASRVRDLFKKA---------KENAPCIVFV 329 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e---~~~pfi~is~se~~~~----~vG~~~~~vr~lf~~a---------~~~~p~IIfI 329 (500)
.+++.||||||||+++.+++.. .+.++..+..+.-... ..+.....+..++... ......+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 6899999999999999999764 3667776654322211 1122222333333110 0113479999
Q ss_pred cCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 330 DEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 330 DEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
||+..+. ...+..|+..+ .....+++++-.+.
T Consensus 286 DEasml~--------------~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 286 DEVSMMG--------------DALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp CCGGGCC--------------HHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred cCccCCC--------------HHHHHHHHHhC---cCCCEEEEEecccc
Confidence 9998772 23455555443 23445666665554
No 167
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.01 E-value=0.0018 Score=65.05 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.1
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
|..+..-++|.|+||+|||++|..+|..+ +.++++++..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 34444468999999999999999997654 5688888754
No 168
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.01 E-value=0.00042 Score=64.26 Aligned_cols=31 Identities=35% Similarity=0.763 Sum_probs=27.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
++-++|.|+||+||||+|+.+++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877764
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.00042 Score=67.37 Aligned_cols=32 Identities=38% Similarity=0.512 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
-++|.||||+|||++|+++|++.+.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998886654
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.97 E-value=0.00038 Score=63.67 Aligned_cols=38 Identities=24% Similarity=0.449 Sum_probs=30.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+.-++|.|+||+||||+++.+|..++.+++ +..++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i--~~d~~~~~ 46 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHL--STGDLLRS 46 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHHH
Confidence 446999999999999999999999988765 44455443
No 171
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.97 E-value=0.00052 Score=61.57 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|+|.|+||+|||++|+.++..++.+++. ..++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id--~d~~~~ 38 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD--TDIFMQ 38 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc--ccHHHH
Confidence 58999999999999999999999988764 444443
No 172
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.97 E-value=0.00053 Score=62.40 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.4
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAral 284 (500)
.-+.|.||+|+|||||++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999953
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.95 E-value=0.00036 Score=61.96 Aligned_cols=34 Identities=35% Similarity=0.624 Sum_probs=27.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
-++|.||||+||||+|+.+ ...+.+++.+ +++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~--~~~~~ 36 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM--SDVVR 36 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH--hHHHH
Confidence 4889999999999999999 8888887653 44443
No 174
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00057 Score=64.36 Aligned_cols=37 Identities=22% Similarity=0.468 Sum_probs=30.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..++|.|+||+||||+++.+|..++.+++. ..++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 4579999999999999999999999977654 445544
No 175
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.94 E-value=0.0017 Score=60.48 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+||||+++.+++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999865
No 176
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.93 E-value=0.00042 Score=62.77 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
|.-++|.|+||+||||+|+.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 456899999999999999999999999887
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.91 E-value=0.0015 Score=62.36 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
+.|+-|+|.||||+||+|.|+.+|...+.+. ++..++...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdllR~ 66 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLLRA 66 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHHHH
Confidence 4466789999999999999999999998654 565665543
No 178
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00044 Score=65.52 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|.-++|.|+||+||||+++.+|..++.+++. .+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 43 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLS--SGDLLR 43 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE--HHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe--chHHHH
Confidence 34579999999999999999999999877654 445443
No 179
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.90 E-value=0.00056 Score=64.49 Aligned_cols=37 Identities=27% Similarity=0.563 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..|+|.|+||+||||+|+.+|..++.+++. ..++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 41 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLS--TGDMLR 41 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEe--hhHHHH
Confidence 3468999999999999999999999977764 445544
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.89 E-value=0.00051 Score=62.51 Aligned_cols=35 Identities=34% Similarity=0.639 Sum_probs=28.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
..++|.|+||+||||+++.+|..++.+++ +..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i--~~d~~~ 39 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL--STGDIL 39 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE--CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe--cHHHHH
Confidence 35899999999999999999999987665 444444
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.89 E-value=0.00046 Score=63.29 Aligned_cols=37 Identities=24% Similarity=0.483 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|.-|+|.|+||+|||++|+.++..++.+++ +..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i--~~d~~~~ 48 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL--STGELLR 48 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE--cHHHHHH
Confidence 446999999999999999999999986655 4455543
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.87 E-value=0.00054 Score=64.17 Aligned_cols=35 Identities=29% Similarity=0.595 Sum_probs=28.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|+|.||||+||||+|+.++.+.+.+++. .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~--~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS--TGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe--HHHHHH
Confidence 38899999999999999999999887764 444443
No 183
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.85 E-value=0.0006 Score=63.13 Aligned_cols=37 Identities=16% Similarity=0.393 Sum_probs=29.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+.-|+|.|+||+|||++++.++.+++.+++. ..++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~--~d~~~~ 51 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS--AGDLLR 51 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE--HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe--HHHHHH
Confidence 4568999999999999999999999876654 445544
No 184
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.85 E-value=0.0057 Score=65.62 Aligned_cols=107 Identities=18% Similarity=0.140 Sum_probs=63.3
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHhh------hh----------------------hhhh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEMF------VG----------------------VGAS 310 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~~------vG----------------------~~~~ 310 (500)
....-++|.||+|+|||+|++.+++.. |.+++++...+-...+ .| .+..
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~ 358 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLED 358 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHH
Confidence 333458999999999999999998754 4566666543221110 00 1223
Q ss_pred HHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 311 RVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 311 ~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
..+.++..+....|.+|+||=+..+-.. ....+..+.+..++..+.. .++.+|.++..
T Consensus 359 ~q~~~~a~~l~~~p~llilDp~~~Ld~~------~~~~~~~~~i~~ll~~l~~----~g~tvilvsh~ 416 (525)
T 1tf7_A 359 HLQIIKSEINDFKPARIAIDSLSALARG------VSNNAFRQFVIGVTGYAKQ----EEITGLFTNTS 416 (525)
T ss_dssp HHHHHHHHHHTTCCSEEEEECHHHHTSS------SCHHHHHHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred HHHHHHHHHHhhCCCEEEEcChHHHHhh------CChHHHHHHHHHHHHHHHh----CCCEEEEEECc
Confidence 5566677777788999999955555221 0112244555666666542 24455555544
No 185
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.84 E-value=0.0084 Score=63.23 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=98.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------hh---hh----------hhhhHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG----------VGASRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~-------~~---vG----------~~~~~vr~lf~~a 319 (500)
.|.-++++|++|+||||++..+|..+ +..+..+++..+.. .+ .+ .....+++.++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 46779999999999999999998754 66676666543311 00 01 1223346677777
Q ss_pred HhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCch--hhcCCCCcceEEE
Q 010809 320 KENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDS--ALLRPGRFDRQVT 397 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~--aLlrpgRfdr~I~ 397 (500)
+...+.+|+||..-.+ ..+.+.-..+..+..... +..-++|+-++...+.++. .+.....++ -+.
T Consensus 179 ~~~~~DvVIIDTaGrl---------~~d~~lm~el~~i~~~~~---pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~-gVI 245 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH---------KEDKALIEEMKQISNVIH---PHEVILVIDGTIGQQAYNQALAFKEATPIG-SII 245 (443)
T ss_dssp HHTTCSEEEEECCCCS---------SCCHHHHHHHHHHHHHHC---CSEEEEEEEGGGGGGHHHHHHHHHHSCTTE-EEE
T ss_pred HhCCCCEEEEECCCcc---------cchHHHHHHHHHHHHhhc---CceEEEEEeCCCchhHHHHHHHHHhhCCCe-EEE
Confidence 7766789999987332 122333333444443332 2223344444432221111 111111222 244
Q ss_pred ecCCCHHHHHH-HHHHH-hcCCCCC-----------ccccHHHHHHhCCCCcHHHHHHHHHHHHH----------HHHHc
Q 010809 398 VDVPDIRGRTE-ILKVH-GSNKKFD-----------ADVSLDVIAMRTPGFSGADLANLLNEAAI----------LAGRR 454 (500)
Q Consensus 398 v~~Pd~~eR~~-IL~~~-l~~~~l~-----------~dvdl~~la~~t~G~sgadL~~lv~eAa~----------~A~r~ 454 (500)
+..-|...+.. ++... ..+.++. ...+.+.++.+--| ..|+..+++.|.. .+.+-
T Consensus 246 lTKlD~~~~gG~~ls~~~~~g~PI~fig~Ge~vddL~~f~~~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~~k~ 323 (443)
T 3dm5_A 246 VTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLG--LGDIQGLLEKFKELEKEVEIKEEDIERF 323 (443)
T ss_dssp EECCSSCSSHHHHHHHHHTTCCCEEEEECSSSTTCEEECCHHHHHHHHTT--TTCHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred EECCCCcccccHHHHHHHHHCCCEEEEEcCCChHHhhhCCHHHHHHHHcC--CCcHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 44444433322 22221 1222211 12345666666554 3477777754421 33222
Q ss_pred CCCCcCHHHHHHHHHHH
Q 010809 455 GKAAISSKEIDDSIDRI 471 (500)
Q Consensus 455 ~~~~It~~d~~~Ai~~v 471 (500)
.+...|.+||.+-++.+
T Consensus 324 ~~~~f~l~d~~~q~~~~ 340 (443)
T 3dm5_A 324 LRGKFTLKDMYAQLEAM 340 (443)
T ss_dssp HTTCCCHHHHHHHHHHH
T ss_pred hhCCcCHHHHHHHHHHH
Confidence 23458999999888865
No 186
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.84 E-value=0.0031 Score=64.88 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=43.9
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcC----CCEEEEech-hh--------H-HhhhhhhhhHHHHHHHHHHhCCCeEEE
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGS-EF--------V-EMFVGVGASRVRDLFKKAKENAPCIVF 328 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~----~pfi~is~s-e~--------~-~~~vG~~~~~vr~lf~~a~~~~p~IIf 328 (500)
....++|.||+|+||||+++++++... ..++.+... ++ + ...+|.....++..+..+....|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 334689999999999999999988542 233332211 00 0 000111223445666677667899999
Q ss_pred EcCc
Q 010809 329 VDEI 332 (500)
Q Consensus 329 IDEI 332 (500)
+||+
T Consensus 215 ldE~ 218 (372)
T 2ewv_A 215 VGEM 218 (372)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9998
No 187
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.84 E-value=0.00059 Score=65.85 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.|..|+|.||||+||||+|+.++.+.+.+++ +.+++...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r~ 66 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLRE 66 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHHH
Confidence 4567999999999999999999999987665 44555443
No 188
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.83 E-value=0.00058 Score=63.85 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|+|.||||+||||+|+.++.+.+.+++. .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~--~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS--TGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee--HHHHHH
Confidence 37899999999999999999999887764 444443
No 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.82 E-value=0.00063 Score=61.78 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
.-++|.|+||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 190
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.82 E-value=0.00061 Score=60.88 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|+|.|+||+|||++|+.++..++.+++. ..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~ 36 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQ 36 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHH
Confidence 48999999999999999999999988764 444443
No 191
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.82 E-value=0.014 Score=58.49 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=46.6
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH-------hh---hh-------hh--h-hHHHHHHH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE-------MF---VG-------VG--A-SRVRDLFK 317 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~-------~~---vG-------~~--~-~~vr~lf~ 317 (500)
...|.-+++.||+|+||||++..+|..+ +..+..+++.-+.. .+ .+ .+ . ....+.+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3456678999999999999999998854 55666666543211 11 01 01 1 11233455
Q ss_pred HHHhCCCeEEEEcCcc
Q 010809 318 KAKENAPCIVFVDEID 333 (500)
Q Consensus 318 ~a~~~~p~IIfIDEID 333 (500)
.+....|.+|+||+.-
T Consensus 181 ~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 5566778899999874
No 192
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.82 E-value=0.00065 Score=66.60 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=42.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhh--H---------HhhhhhhhhHHHHHHHHHHhCCCeEEEEc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEF--V---------EMFVGVGASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~--~---------~~~vG~~~~~vr~lf~~a~~~~p~IIfID 330 (500)
-++|.||+|+||||+++++++.. ...++ +.+... . ...+|.....++..+..+....|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~-~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHII-TIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEE-EEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEE-EcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 58999999999999999998854 22222 221111 0 00111122345666777766789999999
Q ss_pred Cc
Q 010809 331 EI 332 (500)
Q Consensus 331 EI 332 (500)
|.
T Consensus 106 Ep 107 (261)
T 2eyu_A 106 EM 107 (261)
T ss_dssp CC
T ss_pred CC
Confidence 98
No 193
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.81 E-value=0.0062 Score=57.24 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=43.0
Q ss_pred ceEEEEcCCCChHH-HHHHHHHH--hcCCCEEEEech---hhHHhh---hhh-----hhhHHHHHHHHHHhCCCeEEEEc
Q 010809 265 KGVLLVGPPGTGKT-LLAKAIAG--EAGVPFFSISGS---EFVEMF---VGV-----GASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 265 ~gvLL~GppGTGKT-~LAralA~--e~~~pfi~is~s---e~~~~~---vG~-----~~~~vr~lf~~a~~~~p~IIfID 330 (500)
+-.+++||.|+||| .|.+++.+ +.+..+++++.. .+.+.+ .|. ......++++..+ ...+|+||
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIlID 98 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIGID 98 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEEES
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEEEE
Confidence 34788999999999 88888855 457788888644 221111 110 0112233444333 24699999
Q ss_pred Ccchh
Q 010809 331 EIDAV 335 (500)
Q Consensus 331 EID~l 335 (500)
|++-+
T Consensus 99 EaQFf 103 (195)
T 1w4r_A 99 EGQFF 103 (195)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99988
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.81 E-value=0.0015 Score=60.64 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=28.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
..+.|.||+|+||||+++.+++ +|.+++ ++.++..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~i--d~d~~~~ 37 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLV--DADVVAR 37 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEE--EHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCccc--chHHHHH
Confidence 3588999999999999999998 788776 5555543
No 195
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.80 E-value=0.00088 Score=63.83 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=30.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
+..|+|.|+||+||||+|+.+|.+++.+++. ..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~li~ 52 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA--TGDMLR 52 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE--HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec--HHHHHH
Confidence 3469999999999999999999999977654 445543
No 196
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.78 E-value=0.0059 Score=57.41 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=66.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech---------hhHHhhh-----------------hhhhhHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS---------EFVEMFV-----------------GVGASRVRDLF 316 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s---------e~~~~~v-----------------G~~~~~vr~lf 316 (500)
.|++++++|.|||++|-++|-.+ |..+..+..- ++.+.+. .......+..+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 58999999999999999996654 7777777321 2333331 00123345555
Q ss_pred HHHHh----CCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCCCchhhcCCCCc
Q 010809 317 KKAKE----NAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADILDSALLRPGRF 392 (500)
Q Consensus 317 ~~a~~----~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~Ld~aLlrpgRf 392 (500)
+.+++ ....+|++||+-....-.-- .. ..++..+. ......-||.|+|.+ +++|+. +.
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~l-------~~----~ev~~~l~--~Rp~~~~vIlTGr~a---p~~l~e--~A 171 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDYL-------PL----EEVISALN--ARPGHQTVIITGRGC---HRDILD--LA 171 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTSS-------CH----HHHHHHHH--TSCTTCEEEEECSSC---CHHHHH--HC
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCCC-------CH----HHHHHHHH--hCcCCCEEEEECCCC---cHHHHH--hC
Confidence 55543 45789999999654322111 11 22333333 223456788888764 345554 55
Q ss_pred ceEEEe
Q 010809 393 DRQVTV 398 (500)
Q Consensus 393 dr~I~v 398 (500)
|.+-++
T Consensus 172 D~VTem 177 (196)
T 1g5t_A 172 DTVSEL 177 (196)
T ss_dssp SEEEEC
T ss_pred cceeee
Confidence 554444
No 197
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.76 E-value=0.00097 Score=61.94 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
+.-+.|.||+|+||||+++.+++..|..+ +++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 44689999999999999999999987654 455444
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.76 E-value=0.00099 Score=60.10 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=27.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
..++|.||+|+|||++++.+++..|.+++ ++.++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 46899999999999999999998886655 44443
No 199
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.75 E-value=0.013 Score=61.71 Aligned_cols=72 Identities=24% Similarity=0.228 Sum_probs=46.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH----------hhhhh----------hhhHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE----------MFVGV----------GASRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~----------~~vG~----------~~~~vr~lf~~a 319 (500)
.|.-+++.||+|+||||++..+|..+ +..+..+++.-+.. ...+. .....+..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 46678999999999999999998754 66676666542211 01111 111234455555
Q ss_pred HhCCCeEEEEcCcch
Q 010809 320 KENAPCIVFVDEIDA 334 (500)
Q Consensus 320 ~~~~p~IIfIDEID~ 334 (500)
....+.+|+||....
T Consensus 176 ~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGR 190 (433)
T ss_dssp TTTTCSEEEEEECCC
T ss_pred HhcCCCEEEEECCCC
Confidence 556788999998744
No 200
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.74 E-value=0.0007 Score=63.83 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.|..++|.||||+||||+++.+|..++.++ ++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~--i~~d~~~~ 41 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAH--ISAGDLLR 41 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEE--CCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCce--ecHHHHHH
Confidence 345799999999999999999999998755 45455443
No 201
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.73 E-value=0.0014 Score=60.92 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
+.-+.|.||+|+||||+++++|+.+ |...+++++.++
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4468999999999999999999987 555556666554
No 202
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.73 E-value=0.00093 Score=67.71 Aligned_cols=35 Identities=34% Similarity=0.603 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
+++.++|+||+|+|||++|+.+|++.+.+++.++.
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 35579999999999999999999999988887754
No 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.70 E-value=0.0051 Score=71.19 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=34.2
Q ss_pred cCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 010809 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e 287 (500)
+|.++.+++|.+.+.... ..+-+.|+|+.|+|||+||+.++..
T Consensus 131 VGRe~eLeeL~elL~~~d-----------~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLELR-----------PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHCC-----------SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhccC-----------CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 899988888888765321 1346899999999999999999863
No 204
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.69 E-value=0.001 Score=60.32 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~ 301 (500)
-|+|.|+||+||||+++.++..++ .++..++.+++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 489999999999999999999765 446666654443
No 205
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.69 E-value=0.0013 Score=66.78 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=47.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-hH----Hh---hhhhhhhHHHHHHHHHHhCCCeEEEEcCcch
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FV----EM---FVGVGASRVRDLFKKAKENAPCIVFVDEIDA 334 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se-~~----~~---~vG~~~~~vr~lf~~a~~~~p~IIfIDEID~ 334 (500)
.+++.||+|+|||||++++++... .-.+.+.+.. +. .. ++..+..+.+..+..+....|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 699999999999999999998753 2234444321 10 00 1100345677788888888999999999843
No 206
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.65 E-value=0.0022 Score=59.96 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=31.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGV 307 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~ 307 (500)
.+.|+|++||||||+++.++..+|++++ ++.++.....+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vi--d~D~~~~~~~~~ 53 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVV--NVDRIGHEVLEE 53 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEE--ECcHHHHHHHHH
Confidence 4889999999999999999998898775 556665554443
No 207
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.60 E-value=0.0015 Score=61.33 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=28.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
..+.|.||+|+||||+++.+++.++++++ +..++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~--d~g~i~ 40 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL--DSGAIY 40 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCccee
Confidence 36899999999999999999999997765 444443
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.60 E-value=0.0022 Score=59.76 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|+|+||+|+|||+|++.+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999997653
No 209
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.59 E-value=0.0017 Score=59.11 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=27.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is 296 (500)
-+.|.|+||+||||+++.++..+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999987 88988764
No 210
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.58 E-value=0.01 Score=54.61 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.+|+|+|||.++-.++.+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~ 71 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKD 71 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999887664
No 211
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.57 E-value=0.0046 Score=58.92 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
.-+.|.||+|+|||||.+++++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3588999999999999999998754
No 212
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.57 E-value=0.0018 Score=59.64 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=28.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEe
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSIS 296 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is 296 (500)
+.-|.|.|++|+||||+++.++..+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57887665
No 213
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.57 E-value=0.0049 Score=65.64 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
|.....-++|.|+||+|||++|..+|..+ +.++++++..
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 44444568999999999999999997654 5688888765
No 214
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.54 E-value=0.0015 Score=61.86 Aligned_cols=35 Identities=37% Similarity=0.631 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.||||+||+|.|+.+|+..+.+. ++..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 378999999999999999999998765 45555543
No 215
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.53 E-value=0.002 Score=59.41 Aligned_cols=34 Identities=32% Similarity=0.591 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
.+.|.|++|+|||++++.+|+.++.+++. ..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d--~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS--SGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec--cchHH
Confidence 68899999999999999999999988874 34444
No 216
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.52 E-value=0.0016 Score=61.11 Aligned_cols=35 Identities=29% Similarity=0.526 Sum_probs=28.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
.++|.|+||+||||+|+.++..++.+++. .+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~--~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS--TGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE--HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe--HHHHHH
Confidence 48999999999999999999999887754 444443
No 217
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.52 E-value=0.00048 Score=70.66 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=26.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
+++|+||||+|||++++++|+.++.+|+.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 69999999999999999999999888854
No 218
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.51 E-value=0.013 Score=62.94 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=62.0
Q ss_pred CceEEEEcCCCChHHHHHHH--HHHhc--CCCEEEEechhhHHhh------hhh--------------------------
Q 010809 264 PKGVLLVGPPGTGKTLLAKA--IAGEA--GVPFFSISGSEFVEMF------VGV-------------------------- 307 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAra--lA~e~--~~pfi~is~se~~~~~------vG~-------------------------- 307 (500)
...++|.||+|+|||+|++. +++.. +...+++++.+..... +|.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~~l 118 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVV 118 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCSCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhhhh
Confidence 34689999999999999999 44532 4456677664321100 000
Q ss_pred ----hhhHHHHHHHHHHhCCCeEEEEcCcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCCCCC
Q 010809 308 ----GASRVRDLFKKAKENAPCIVFVDEIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNRADI 381 (500)
Q Consensus 308 ----~~~~vr~lf~~a~~~~p~IIfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~~~~ 381 (500)
-...............|.+|+|||+-++...- +.+....+.+..++..+.. .++.+|.+|.+.+.
T Consensus 119 ~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l~~----~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 119 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARLKQ----IGATTVMTTERIEE 187 (525)
T ss_dssp SSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHHHH----HTCEEEEEEECSSS
T ss_pred cccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHHHH----CCCEEEEEecCCCC
Confidence 00112223333445678899999997763320 1122344566667766642 24566667766554
No 219
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.49 E-value=0.0023 Score=61.72 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC--------EEEEechhhHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP--------FFSISGSEFVE 302 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~p--------fi~is~se~~~ 302 (500)
.|.-|.|.|++|+|||++|+.++..++.+ +..++..++..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 34569999999999999999999998876 34567776653
No 220
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.48 E-value=0.0018 Score=62.09 Aligned_cols=30 Identities=30% Similarity=0.619 Sum_probs=26.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
|.-+.|.||+|+||||+++.++..++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 557999999999999999999999887654
No 221
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.47 E-value=0.0016 Score=59.71 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=26.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987764
No 222
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.47 E-value=0.0035 Score=57.92 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=28.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
.+.|.|++|+||||+++.+++ .++++++ ..++...
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~--~d~~~~~ 37 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD--ADKLIHS 37 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE--HHHHHHG
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE--ccHHHHH
Confidence 488999999999999999999 8877665 4444443
No 223
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.41 E-value=0.0024 Score=58.63 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=29.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
|..|.|.|++|+|||++++.+++. |.+++ +..++...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~i--d~d~~~~~ 44 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVL--DLDALAAR 44 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEE--EHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEE--cccHHHHH
Confidence 456899999999999999999998 87765 45555543
No 224
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.39 E-value=0.0052 Score=64.81 Aligned_cols=39 Identities=26% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
|..+..-++|.|+||+|||++|..+|..+ +.++.+++..
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 44444568999999999999999987654 6788888764
No 225
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.39 E-value=0.0026 Score=58.11 Aligned_cols=30 Identities=20% Similarity=0.252 Sum_probs=26.1
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is 296 (500)
|.|.|++|+||||+++.++..+ +.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999988 99887653
No 226
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.38 E-value=0.014 Score=58.19 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
.+..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45678999999999999999998743 5567766654
No 227
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.38 E-value=0.017 Score=52.87 Aligned_cols=19 Identities=37% Similarity=0.387 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra 283 (500)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999987433
No 228
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.37 E-value=0.002 Score=60.96 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=28.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
-++|.|+||+||||+++.++..++.+++ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHHH
Confidence 3799999999999999999999987654 4445543
No 229
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.37 E-value=0.0098 Score=55.54 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=41.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechh---hHH----hhhhhh-----hhHHHHHHHHHHhCCCeEEEEc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSE---FVE----MFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se---~~~----~~vG~~-----~~~vr~lf~~a~~~~p~IIfID 330 (500)
-.+++||+|+|||+.+..++..+ +..++.+...- ..+ ...|.. .....++++.+.. ...+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 57889999999999998887654 66666554211 000 001110 0112355555432 35799999
Q ss_pred Ccchh
Q 010809 331 EIDAV 335 (500)
Q Consensus 331 EID~l 335 (500)
|++.+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 99887
No 230
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.36 E-value=0.0098 Score=60.53 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 260 GARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 260 G~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
|..+..-++|.|+||+|||++|..+|..+ +.++.+++..
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 33444458999999999999999997753 7788887654
No 231
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.35 E-value=0.015 Score=55.96 Aligned_cols=36 Identities=31% Similarity=0.579 Sum_probs=29.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
-+-|.||||+||||+|+.++..++++.+ +..++...
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR~ 45 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDMLRA 45 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHHHH
Confidence 3678999999999999999999998876 44455443
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0036 Score=58.16 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
..++-++|.||||+|||++++.++....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3455799999999999999999999874
No 233
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.28 E-value=0.013 Score=57.86 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||++.+++-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48899999999999999998843
No 234
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.27 E-value=0.0012 Score=61.11 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=24.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCC
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~p 291 (500)
.+.-|+|.|+||+||||+++.++..++.+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35579999999999999999999876543
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.26 E-value=0.0029 Score=61.14 Aligned_cols=35 Identities=26% Similarity=0.499 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
|..+.|.||||+|||++++.+|+.++.+++ +...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~--d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL--DTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc--cCCcH
Confidence 456999999999999999999999987664 44444
No 236
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.26 E-value=0.0038 Score=57.53 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCC--EEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVP--FFS 294 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~p--fi~ 294 (500)
+.-|+|.|+||+||||+++.++..++.. ++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 3468999999999999999999988763 544
No 237
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.24 E-value=0.01 Score=64.95 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=18.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.++++|+||||||+++.++...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHH
Confidence 5899999999999998877543
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.23 E-value=0.0048 Score=56.25 Aligned_cols=38 Identities=32% Similarity=0.337 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
.+.-++|.|+||+|||++++.++..+ +.++..+++..+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 34568999999999999999999876 455666665544
No 239
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.23 E-value=0.0023 Score=65.20 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
++-++|.||+|+|||+|+..+|.+++.+++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3468999999999999999999999888776554
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.22 E-value=0.0039 Score=58.32 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
+.-+.|.||+|+|||++++.+++...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44688999999999999999998763
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.16 E-value=0.0033 Score=61.22 Aligned_cols=29 Identities=41% Similarity=0.667 Sum_probs=27.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
.+.|.|++|+|||++++.+|+.++.+|+.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d 78 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFD 78 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEe
Confidence 69999999999999999999999987765
No 242
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0015 Score=60.50 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
|.-|+|.|+||+||||+++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55799999999999999999998753
No 243
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.14 E-value=0.004 Score=58.19 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=31.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV 301 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~ 301 (500)
+.-++|.|++|+|||++++.+++.+ |.+++.+++..+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4468999999999999999999865 5678888765553
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.12 E-value=0.0088 Score=55.74 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
+.-+.|.||+|+|||||++.+++...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44688999999999999999999764
No 245
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.11 E-value=0.003 Score=62.08 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=28.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se~~~ 302 (500)
|.-++|.|+||+||||+|+.++.+. +.+ .++...+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~--~i~~D~~r~ 39 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY--NINRDDYRQ 39 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE--EECHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcE--EecccHHHH
Confidence 4568999999999999999999864 544 445555543
No 246
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.08 E-value=0.085 Score=48.87 Aligned_cols=58 Identities=17% Similarity=0.136 Sum_probs=34.1
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCCC---CCceEEEEcCCCChHHHHHHHHHHh
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~---~p~gvLL~GppGTGKT~LAralA~e 287 (500)
.+|+|+.-.++..+.+.+. .+..|..++..... ..+.+++.+|+|+|||..+-..+-+
T Consensus 14 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHT--TCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 4688875555555555431 13334444432111 1246999999999999877655443
No 247
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.07 E-value=0.0035 Score=63.16 Aligned_cols=35 Identities=34% Similarity=0.612 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEec
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISG 297 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~ 297 (500)
.|+-++|.||+|+|||+||..+|.+.+.+++..+.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 45678999999999999999999998877766543
No 248
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.05 E-value=0.0066 Score=59.83 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=29.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~ 303 (500)
|.-|.|+|++|+||||+|+.++ +.|.++ +++.++...
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~--id~D~~~~~ 111 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYI--IDSDHLGHR 111 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEE--EEHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcE--EehhHHHHH
Confidence 4568999999999999999999 678765 455566443
No 249
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.02 E-value=0.0048 Score=57.73 Aligned_cols=36 Identities=28% Similarity=0.363 Sum_probs=28.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~ 302 (500)
|.-|.|.|++|+||||+++.++. +|.+++ +..++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~i--d~D~~~~ 39 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVI--DADIIAR 39 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEE--EccHHHH
Confidence 44689999999999999999998 787665 4444443
No 250
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.02 E-value=0.0046 Score=57.75 Aligned_cols=36 Identities=25% Similarity=0.447 Sum_probs=29.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
|..+.|.|++|+|||++++.++..++.+++. ..++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~--~d~~~ 38 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD--TGAMY 38 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE--HHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec--CChHH
Confidence 3468999999999999999999999987754 44443
No 251
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.00 E-value=0.0042 Score=56.66 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+-+.|.||+|+|||||++.+++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 252
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.00 E-value=0.0032 Score=58.43 Aligned_cols=34 Identities=26% Similarity=0.333 Sum_probs=26.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc-CCCEEEEechhh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA-GVPFFSISGSEF 300 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~-~~pfi~is~se~ 300 (500)
.-+.|.|++|+||||+++.+++.. +++++ +..++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i--~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI--SQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE--EGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE--eCCcc
Confidence 357899999999999999999987 55444 44443
No 253
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.98 E-value=0.0052 Score=58.50 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=30.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
..+..+.|.|++|+|||++++.+|+.+|++++ +..++.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~--d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCcee--cCCCee
Confidence 34556899999999999999999999998765 444444
No 254
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.96 E-value=0.01 Score=55.86 Aligned_cols=25 Identities=24% Similarity=0.583 Sum_probs=22.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
++-+.|.||+|+|||+|++++++..
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998764
No 255
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.93 E-value=0.018 Score=61.96 Aligned_cols=40 Identities=30% Similarity=0.504 Sum_probs=31.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVEM 303 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~~ 303 (500)
|.-|+|+|.||+|||++|+.+|..+ +.+...++..++...
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 4468999999999999999999887 555666777666544
No 256
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.93 E-value=0.05 Score=53.84 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=37.2
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCC----CCCceEEEEcCCCChHHHHHHHHHHhc-----CCCEEEEec
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA----RIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSISG 297 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~----~~p~gvLL~GppGTGKT~LAralA~e~-----~~pfi~is~ 297 (500)
.+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..+-+. +...+.+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNK--GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CchhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 4577765445555444431 1233333332211 112479999999999999876554432 445555544
No 257
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.93 E-value=0.022 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999999843
No 258
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.036 Score=52.51 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA 285 (500)
+.+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 469999999999998776653
No 259
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.91 E-value=0.0039 Score=66.94 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC--CCEEEEechh-hHH---hh--------hhhhhhHHHHHHHHHHhCCCeEEEEcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGSE-FVE---MF--------VGVGASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~--~pfi~is~se-~~~---~~--------vG~~~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
++++.||+|+||||+++++++... ...+.+.... +.- .+ ++.+.-.+.+++..+....|.+++++|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgE 341 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGE 341 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCC
Confidence 699999999999999999998763 2344444322 110 00 011122455666666677899999999
Q ss_pred cc
Q 010809 332 ID 333 (500)
Q Consensus 332 ID 333 (500)
+-
T Consensus 342 ir 343 (511)
T 2oap_1 342 VR 343 (511)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 260
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.89 E-value=0.0071 Score=63.07 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEF 300 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~ 300 (500)
.|.-|+|+|+||+||||+|+.++..++.+++ +..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i--~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV--NRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC--CGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE--ccchH
Confidence 3456899999999999999999999876554 44443
No 261
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.88 E-value=0.0061 Score=58.91 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=25.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
.+.|.||+|+||||+++.+|+.+|.+++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 5899999999999999999999997665
No 262
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.80 E-value=0.025 Score=55.36 Aligned_cols=23 Identities=35% Similarity=0.660 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||++++++..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999998843
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.79 E-value=0.0078 Score=54.88 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=26.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFV 301 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~ 301 (500)
-++|.||+|+||||+++.+++..+. .+.+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~~ 38 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDIIN 38 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccchh
Confidence 4789999999999999999985543 3456665554
No 264
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.76 E-value=0.033 Score=54.11 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 265
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.73 E-value=0.0061 Score=56.01 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
+.-+.|.||+|+||||+++.+++..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4468999999999999999999876
No 266
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.72 E-value=0.0058 Score=62.30 Aligned_cols=32 Identities=28% Similarity=0.338 Sum_probs=27.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+-++|.||+|+|||++|+.+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986665543
No 267
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=95.70 E-value=0.024 Score=47.37 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=40.4
Q ss_pred CCccccHHHHH-HHHhhCCccEEEEeeCCeEEEEEecccccCcceeEEEEEcCCCcHHHHHHHHhc
Q 010809 92 SSSRMSYSRFL-EYLDKDRVKKVDLFENGTIAIVEAISPELGNRVQRVRVQLPGLSQELLQKFREK 156 (500)
Q Consensus 92 ~~~~~~y~~f~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (500)
...+|||++|. ++|++|.|++|.+.++. .+.+.............+.+.++. .+.|.+.|++.
T Consensus 14 ~~~eIs~~eF~~~~L~kG~V~kI~V~nk~-~v~V~l~~~a~~~~~~~~~f~IGS-vd~FE~~Le~a 77 (99)
T 2lna_A 14 SGREITWKDFVNNYLSKGVVDRLEVVNKR-FVRVTFTPGKTPVDGQYVWFNIGS-VDTFERNLETL 77 (99)
T ss_dssp SSEECCHHHHHHHTGGGTCEEEEEEETTT-EEEEEECTTTSCSTTCCEEEECSC-HHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHhhCCCceEEEEEcCC-EEEEEEcCCCcCCCCceEEEEeCC-HHHHHHHHHHH
Confidence 45789999999 79999999999887444 433433332211112335667763 45677777653
No 268
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.70 E-value=0.018 Score=53.31 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=29.0
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
+.-+.|.|++|+|||++++.+++.+ +.+++..+...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 4468899999999999999999865 667766654433
No 269
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.68 E-value=0.042 Score=51.69 Aligned_cols=54 Identities=20% Similarity=0.137 Sum_probs=31.0
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAr 282 (500)
..+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEA--QYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHT--TCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 34688876555555544431 1333433333211 123579999999999998643
No 270
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.66 E-value=0.039 Score=56.84 Aligned_cols=22 Identities=45% Similarity=0.691 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||+|+|||||.+.+|+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999999984
No 271
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.65 E-value=0.015 Score=60.11 Aligned_cols=23 Identities=48% Similarity=0.741 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999999843
No 272
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.59 E-value=0.033 Score=63.81 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~ 286 (500)
..-++|.||.|+||||+.|.++.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHH
Confidence 34689999999999999999874
No 273
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.57 E-value=0.0068 Score=61.16 Aligned_cols=32 Identities=31% Similarity=0.302 Sum_probs=26.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEe
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSIS 296 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is 296 (500)
+-++|.||+|+|||+||..+|...+..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~D 35 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGD 35 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECC
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecC
Confidence 35889999999999999999998876655443
No 274
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.54 E-value=0.085 Score=48.18 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAr 282 (500)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 479999999999997654
No 275
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.52 E-value=0.027 Score=53.60 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=38.4
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCCEEEEechhh--------HHhhhhhh-----hhHHHHHHHHHHhCCCeEEEEc
Q 010809 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSEF--------VEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e---~~~pfi~is~se~--------~~~~vG~~-----~~~vr~lf~~a~~~~p~IIfID 330 (500)
.+++||.|+|||+.+-.++.. .+..++.+...-- .+. .|.. .....++++.+. ....+|+||
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~-~g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSH-NGLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhh-cCCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 568999999999998888664 4666766643211 110 0100 011123443332 235799999
Q ss_pred Ccchh
Q 010809 331 EIDAV 335 (500)
Q Consensus 331 EID~l 335 (500)
|+..+
T Consensus 109 EaQF~ 113 (214)
T 2j9r_A 109 EVQFF 113 (214)
T ss_dssp CGGGS
T ss_pred CcccC
Confidence 99987
No 276
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.50 E-value=0.036 Score=57.99 Aligned_cols=93 Identities=20% Similarity=0.323 Sum_probs=51.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEech-hhH-
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGS-EFV- 301 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~s-e~~- 301 (500)
..+++++.-..+.+..+.++ +..+. ..+++.||+|+||||+.+++++... ..++.+.-. ++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l---~~~~g----------gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL---IKRPH----------GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH---HTSSS----------EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHH---HHhcC----------CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 45677775444444444443 22221 1478999999999999999998763 233333211 110
Q ss_pred H----hhhh-hhhhHHHHHHHHHHhCCCeEEEEcCc
Q 010809 302 E----MFVG-VGASRVRDLFKKAKENAPCIVFVDEI 332 (500)
Q Consensus 302 ~----~~vG-~~~~~vr~lf~~a~~~~p~IIfIDEI 332 (500)
. ..+. ...-.....+..+....|.++++.|+
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 0 0000 00112334455555567899999985
No 277
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.49 E-value=0.028 Score=52.67 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=32.4
Q ss_pred CCCCcCcccccCChH-HHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHHH
Q 010809 224 PNTGVTFDDVAGVDE-AKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 224 ~~~~~~f~dv~G~de-~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAra 283 (500)
+.+..+|+|..+... ..+.+.+. .+..|..++.... ...+.+++.+|+|+|||..+-.
T Consensus 15 p~p~~~f~~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 15 PKPTCRFKDAFQQYPDLLKSIIRV--GILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCCCCSHHHHHTTCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHH
T ss_pred CCChhhHhhhhccCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 445567888655543 33333221 1334444443221 1235799999999999986543
No 278
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.49 E-value=0.0087 Score=56.05 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=27.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
-|.|.|++|+|||++++.+|+.+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999883
No 279
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.45 E-value=0.11 Score=48.21 Aligned_cols=53 Identities=21% Similarity=0.162 Sum_probs=31.5
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LA 281 (500)
..+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~ 68 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTF 68 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHC--CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHH
Confidence 45788876555555555432 1333444433211 12357999999999999873
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.40 E-value=0.011 Score=54.80 Aligned_cols=25 Identities=44% Similarity=0.755 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
++-+.|.||+|+|||||++.+++..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468999999999999999999865
No 281
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.40 E-value=0.008 Score=55.72 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
+.-+.|.||+|+|||||++.+++..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34588999999999999999999876
No 282
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.39 E-value=0.01 Score=58.94 Aligned_cols=28 Identities=25% Similarity=0.463 Sum_probs=24.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
..|.-+.|.||+|+||||+++.+++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4455688999999999999999988764
No 283
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.37 E-value=0.0098 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 358899999999999999999975
No 284
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.36 E-value=0.0084 Score=56.69 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=25.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
.++++|.||+|+|||+||..++...+ +++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 35799999999999999999998865 55543
No 285
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.30 E-value=0.0097 Score=54.45 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
+-+.|.||+|+|||||++.+++..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999865
No 286
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.30 E-value=0.014 Score=64.18 Aligned_cols=38 Identities=29% Similarity=0.519 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF 300 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~ 300 (500)
.+.-|+|.|.||+||||+|++++..+ +.+++.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34569999999999999999999998 999999876544
No 287
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.27 E-value=0.065 Score=58.15 Aligned_cols=24 Identities=33% Similarity=0.387 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 358899999999999999998854
No 288
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.25 E-value=0.06 Score=60.59 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..+++.||+|+|||+++..++.+
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999977777554
No 289
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.23 E-value=0.04 Score=52.14 Aligned_cols=56 Identities=20% Similarity=0.146 Sum_probs=32.4
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAra 283 (500)
+..+|+++.=.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAY--GFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 346799985444444444321 1334444443211 1235799999999999987433
No 290
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.21 E-value=0.037 Score=56.88 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||+|+|||||.+.+++-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4889999999999999999984
No 291
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.20 E-value=0.052 Score=51.48 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=16.0
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra 283 (500)
+.+++.+|+|+|||..+-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 4799999999999987543
No 292
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.18 E-value=0.024 Score=59.55 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.|..++++|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45679999999999999999998865 4666666654
No 293
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.14 E-value=0.05 Score=54.73 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=29.5
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
...|+-++++||+|+||||++..+|..+ +..+..+++.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3456679999999999999999998754 5666666543
No 294
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.12 E-value=0.058 Score=57.58 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..+.-+.|.||+|+||||+++.+|+.+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345568899999999999999999864
No 295
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.06 E-value=0.082 Score=50.91 Aligned_cols=90 Identities=21% Similarity=0.173 Sum_probs=49.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH---hcCCCEEEEech-------hhHHhhhhhh-----hhHHHHHHHHHHhCCCeEEEEc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGS-------EFVEMFVGVG-----ASRVRDLFKKAKENAPCIVFVD 330 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~---e~~~pfi~is~s-------e~~~~~vG~~-----~~~vr~lf~~a~~~~p~IIfID 330 (500)
-.+++||.|+|||+.+-..+. ..+..++.+... .+.+.. |.. .....++++.+ ....+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 467899999999977766644 346666655421 111110 110 01113355555 335799999
Q ss_pred CcchhhhccCCCCCCCChHHHHHHHHHHHHhcCCCCCCCeEEEEeeCC
Q 010809 331 EIDAVGRQRGTGIGGGNDEREQTLNQLLTEMDGFEGNTGIIVIAATNR 378 (500)
Q Consensus 331 EID~l~~~r~~~~~~~~~e~~~~L~~LL~emd~~~~~~~viVIaaTN~ 378 (500)
|+..+ .+ +.+++..++. .++.||++.-+
T Consensus 98 EaQF~-----------~~-----v~el~~~l~~----~gi~VI~~GL~ 125 (234)
T 2orv_A 98 EGQFF-----------PD-----IVEFCEAMAN----AGKTVIVAALD 125 (234)
T ss_dssp SGGGC-----------TT-----HHHHHHHHHH----TTCEEEEECCS
T ss_pred chhhh-----------hh-----HHHHHHHHHh----CCCEEEEEecc
Confidence 99887 11 4555555542 34567776543
No 296
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.04 E-value=0.064 Score=61.54 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~ 286 (500)
.-++|+||.|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999943
No 297
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.03 E-value=0.011 Score=61.47 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
+-++|.||+|+|||+||..+|...+..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 4588999999999999999999887665543
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.03 E-value=0.072 Score=55.90 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc----CCCEEEEechhhH----Hh---h---hh---------h-hhhHHHHHHH
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGSEFV----EM---F---VG---------V-GASRVRDLFK 317 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~----~~pfi~is~se~~----~~---~---vG---------~-~~~~vr~lf~ 317 (500)
..|+.++++|++|+||||++-.+|..+ |..+..+++.-+. +. + .+ . ....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 457789999999999999999997643 6778777775321 11 0 00 0 1222356677
Q ss_pred HHHhCCCeEEEEcCc
Q 010809 318 KAKENAPCIVFVDEI 332 (500)
Q Consensus 318 ~a~~~~p~IIfIDEI 332 (500)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 766555679999874
No 299
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.99 E-value=0.044 Score=58.64 Aligned_cols=36 Identities=25% Similarity=0.250 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~ 297 (500)
..|+.|+++|+||+||||++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 346679999999999999999998654 666776766
No 300
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.94 E-value=0.093 Score=52.96 Aligned_cols=58 Identities=24% Similarity=0.229 Sum_probs=32.6
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCC---CCceEEEEcCCCChHHHHHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~---~p~gvLL~GppGTGKT~LAralA 285 (500)
...+|+|+.-.++..+.+.+. .+..+..++..... ..+.+++.+|+|+|||+.+-..+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEA--GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 345788886555555544431 13333333332111 12469999999999998765443
No 301
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.92 E-value=0.075 Score=49.94 Aligned_cols=54 Identities=15% Similarity=0.199 Sum_probs=30.7
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LA 281 (500)
+..+|+++.-.++..+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAA--GFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCCHhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 346788875445555544331 1333444443211 12357999999999999874
No 302
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.90 E-value=0.017 Score=53.59 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=28.5
Q ss_pred EEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
+|++|++|+|||++|+.++.. +.|.+|+.-..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88998887644
No 303
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.86 E-value=0.014 Score=55.17 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=15.5
Q ss_pred ceEEEEcCCCChHHHHHHHHH-Hhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIA-GEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA-~e~ 288 (500)
.-+.|.||+|+||||+++.++ +..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 358899999999999999999 764
No 304
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.85 E-value=0.056 Score=53.62 Aligned_cols=73 Identities=27% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh----HH---hh---hh---------hhh-hHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VE---MF---VG---------VGA-SRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~----~~---~~---vG---------~~~-~~vr~lf~~a 319 (500)
.++.+.++|++|+|||+++..+|... +..+..+++.-. .. .+ .+ ..+ ...+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568889999999999999998754 556665554211 10 00 00 011 2235566666
Q ss_pred HhCCCeEEEEcCcchh
Q 010809 320 KENAPCIVFVDEIDAV 335 (500)
Q Consensus 320 ~~~~p~IIfIDEID~l 335 (500)
+...+.+|+||+.-..
T Consensus 177 ~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 177 RLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHTCCEEEEECCCCS
T ss_pred HhCCCCEEEEeCCCCc
Confidence 5556789999997443
No 305
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.85 E-value=0.054 Score=59.85 Aligned_cols=34 Identities=38% Similarity=0.431 Sum_probs=23.4
Q ss_pred ceEEEEcCCCChHHHHHHHHH-Hhc--CCCEEEEech
Q 010809 265 KGVLLVGPPGTGKTLLAKAIA-GEA--GVPFFSISGS 298 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA-~e~--~~pfi~is~s 298 (500)
+++++.+|+|+|||+.+-..+ ... +...+++...
T Consensus 41 ~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~ 77 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPL 77 (702)
T ss_dssp SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 379999999999999984432 222 4556666543
No 306
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.84 E-value=0.068 Score=59.25 Aligned_cols=34 Identities=32% Similarity=0.389 Sum_probs=23.2
Q ss_pred CceEEEEcCCCChHHHHHH-HHHHh---cCCCEEEEec
Q 010809 264 PKGVLLVGPPGTGKTLLAK-AIAGE---AGVPFFSISG 297 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAr-alA~e---~~~pfi~is~ 297 (500)
.+++++.||+|+|||+.+. ++... .+...+++..
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4689999999999999883 33221 2455555543
No 307
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.84 E-value=0.062 Score=54.28 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..|.-+.|.||+|+||||+++.+|+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999854
No 308
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.83 E-value=0.051 Score=59.08 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=32.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~----~pfi~is~se~~~ 302 (500)
+.-|+|.|+||+|||++|++++..++ .+++.+++..+..
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~ 438 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRH 438 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHH
Confidence 45689999999999999999999875 7888888766543
No 309
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.82 E-value=0.17 Score=54.89 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999998854
No 310
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.82 E-value=0.068 Score=56.37 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=28.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~ 301 (500)
|..|+|+|.||+|||++++.++..++ .+...++..++.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r 79 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYR 79 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhh
Confidence 44699999999999999999998763 455555544443
No 311
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.81 E-value=0.094 Score=51.22 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=26.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEEech
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS 298 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~is~s 298 (500)
+.+++.+|+|+|||..+-..+-+.+...+.+...
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~ 65 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPT 65 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCC
Confidence 3699999999999998877766666666666543
No 312
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.81 E-value=0.039 Score=52.63 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=36.2
Q ss_pred EEEEcCCCChHHH-HHHHH--HHhcCCCEEEEech-hh--HHh----hhhhh-----hhHHHHHHHHHHhCCCeEEEEcC
Q 010809 267 VLLVGPPGTGKTL-LAKAI--AGEAGVPFFSISGS-EF--VEM----FVGVG-----ASRVRDLFKKAKENAPCIVFVDE 331 (500)
Q Consensus 267 vLL~GppGTGKT~-LAral--A~e~~~pfi~is~s-e~--~~~----~vG~~-----~~~vr~lf~~a~~~~p~IIfIDE 331 (500)
.+++||.|+|||+ |.+.+ +.+.+..++.+... +- .+. -.|.. .....++++.. .....+|+|||
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~IDE 109 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGIDE 109 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEEec
Confidence 5889999999999 55554 23446666555432 10 000 01100 01112333322 23467999999
Q ss_pred cchh
Q 010809 332 IDAV 335 (500)
Q Consensus 332 ID~l 335 (500)
++-+
T Consensus 110 aQFf 113 (219)
T 3e2i_A 110 VQFF 113 (219)
T ss_dssp GGGS
T ss_pred hhcC
Confidence 9998
No 313
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.77 E-value=0.049 Score=59.14 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||++.+++..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998843
No 314
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.76 E-value=0.13 Score=56.39 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=23.3
Q ss_pred EEEEcCCCChHHHHHHHHHHh---cCCCEEEEechh
Q 010809 267 VLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGSE 299 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e---~~~pfi~is~se 299 (500)
.|++||||||||+++-.+..+ .+.+++.+..+.
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 699999999999766555332 266777666553
No 315
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.76 E-value=0.13 Score=58.18 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
.-++|+||.|+|||++.|.+++-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999873
No 316
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.71 E-value=0.11 Score=56.51 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCc
Confidence 358999999999999999998854
No 317
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.70 E-value=0.14 Score=51.86 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=25.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEec
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~ 297 (500)
.-+.|+|+||+|||+++.+++..+ +..+..+++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 468999999999999999998764 555544443
No 318
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.66 E-value=0.087 Score=48.93 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra 283 (500)
+.+++.+|+|+|||..+-.
T Consensus 42 ~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCEEEECCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999987433
No 319
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.64 E-value=0.019 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.565 Sum_probs=21.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999999976
No 320
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.56 E-value=0.045 Score=51.88 Aligned_cols=127 Identities=15% Similarity=0.211 Sum_probs=69.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechhhHHhhhhhhhhHHHHHHHHHHhCCCeEEEEc---Ccch--hhhccC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSEFVEMFVGVGASRVRDLFKKAKENAPCIVFVD---EIDA--VGRQRG 340 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se~~~~~vG~~~~~vr~lf~~a~~~~p~IIfID---EID~--l~~~r~ 340 (500)
.|-|+|..|||||++++.++. .|+|++ ++..+....+..+...+..+++..-.. + ++ ++|. |+.--.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vi--daD~ia~~l~~~~~~~~~~i~~~fG~~---~--~~~dg~ldR~~L~~~vF 82 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLV--DTDLIAHRITAPAGLAMPAIEQTFGPA---F--VAADGSLDRARMRALIF 82 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEE--EHHHHHHHHTSTTCTTHHHHHHHHCGG---G--BCTTSSBCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEE--ECcHHHHHHhcCCcHHHHHHHHHhChh---h--cCCCCCCcHHHHHHHHh
Confidence 589999999999999999998 888876 555555444444444445554443111 1 12 2332 110000
Q ss_pred CCCCCCChHHHHHHHHHHH---------HhcCCCCCCCeEEEEeeCCCCCCc-hhhcCCCCcceEEEecCCCHHHHHHHH
Q 010809 341 TGIGGGNDEREQTLNQLLT---------EMDGFEGNTGIIVIAATNRADILD-SALLRPGRFDRQVTVDVPDIRGRTEIL 410 (500)
Q Consensus 341 ~~~~~~~~e~~~~L~~LL~---------emd~~~~~~~viVIaaTN~~~~Ld-~aLlrpgRfdr~I~v~~Pd~~eR~~IL 410 (500)
++++..+.|+.++. .+... ...++|+-+ |-.+. ..+.. .||.++.+..|......++.
T Consensus 83 -----~d~~~~~~L~~i~HP~I~~~~~~~~~~~--~~~~vv~d~---pLL~E~~~~~~--~~D~vi~V~ap~e~r~~Rl~ 150 (210)
T 4i1u_A 83 -----SDEDARRRLEAITHPLIRAETEREARDA--QGPYVIFVV---PLLVESRNWKA--RCDRVLVVDCPVDTQIARVM 150 (210)
T ss_dssp -----HCHHHHHHHHHHHHHHHHHHHHHHHHTC--CSSSEEEEC---TTCTTCHHHHH--HCSEEEEEECCHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCEEEEEE---ecccccCCccc--cCCeEEEEECCHHHHHHHHH
Confidence 13334444554432 23321 223444432 22233 33433 68999999988777666665
Q ss_pred HH
Q 010809 411 KV 412 (500)
Q Consensus 411 ~~ 412 (500)
+.
T Consensus 151 ~R 152 (210)
T 4i1u_A 151 QR 152 (210)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 321
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.56 E-value=0.15 Score=56.38 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCChHHHHHHHHH-H---hcCCCEEEEec
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIA-G---EAGVPFFSISG 297 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA-~---e~~~pfi~is~ 297 (500)
..+++++.||+|+|||+.+-..+ . ..+...+++..
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 35689999999999999984443 2 12455665544
No 322
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=94.55 E-value=0.081 Score=55.13 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=30.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEech-hhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGS-EFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~s-e~~~ 302 (500)
.+++++|+|+|||..+-.++...+.+++.+... ++..
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~ 147 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAE 147 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHH
Confidence 589999999999999998888888888877665 4444
No 323
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.54 E-value=0.016 Score=57.44 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=26.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC---CCEEEEechhhH
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG---VPFFSISGSEFV 301 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~---~pfi~is~se~~ 301 (500)
.-|.|.||+|+||||+|+.++..++ ..+..+++.+|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999998765 445566666554
No 324
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.52 E-value=0.15 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=17.4
Q ss_pred CceEEEEcCCCChHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAral 284 (500)
++++++.+|+|+|||+.+-..
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 468999999999999876544
No 325
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.52 E-value=0.022 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~ 289 (500)
-+.|.||+|+|||||++++++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 588999999999999999999763
No 326
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.51 E-value=0.028 Score=50.70 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=21.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||+|++++++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999976
No 327
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.48 E-value=0.1 Score=56.53 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhcc
Confidence 358999999999999999998854
No 328
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.46 E-value=0.021 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=26.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
-|.|.|++|||||++++.+|..++.+|+.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999999864
No 329
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.46 E-value=0.2 Score=50.19 Aligned_cols=67 Identities=16% Similarity=0.140 Sum_probs=36.6
Q ss_pred CcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHHHHHHhc------CCCEEEEec
Q 010809 229 TFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSISG 297 (500)
Q Consensus 229 ~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAralA~e~------~~pfi~is~ 297 (500)
+|+++.-.++..+.|.+. .+..+..++.... ...+.+++.+|+|+|||..+-..+-+. +..++.+..
T Consensus 9 ~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 84 (391)
T 1xti_A 9 GFRDFLLKPELLRAIVDC--GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 84 (391)
T ss_dssp CGGGGCCCHHHHHHHHHH--SCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECC
Confidence 577765444444444331 1333444433221 113579999999999998765444332 335555544
No 330
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.44 E-value=0.024 Score=57.97 Aligned_cols=70 Identities=20% Similarity=0.358 Sum_probs=44.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcC--CCEEEEech-hhH-----Hh--hh-------hh-hhhHHHHHHHHHHhCCCeE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSISGS-EFV-----EM--FV-------GV-GASRVRDLFKKAKENAPCI 326 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~--~pfi~is~s-e~~-----~~--~v-------G~-~~~~vr~lf~~a~~~~p~I 326 (500)
..++|.||+|+|||||++++++... .-.+.+... ++. .. ++ +. ....+++.+..+....|..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~ 255 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTR 255 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCE
Confidence 3699999999999999999998653 223333321 110 00 01 10 2234567777777778999
Q ss_pred EEEcCcch
Q 010809 327 VFVDEIDA 334 (500)
Q Consensus 327 IfIDEID~ 334 (500)
+++||+..
T Consensus 256 ~l~~e~r~ 263 (361)
T 2gza_A 256 ILLAELRG 263 (361)
T ss_dssp EEESCCCS
T ss_pred EEEcCchH
Confidence 99999743
No 331
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.44 E-value=0.054 Score=53.91 Aligned_cols=71 Identities=25% Similarity=0.273 Sum_probs=45.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh----HH---hh---hh----------hhhhHHHHHHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF----VE---MF---VG----------VGASRVRDLFKKAK 320 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~----~~---~~---vG----------~~~~~vr~lf~~a~ 320 (500)
+.-+++.|++|+|||+++..+|..+ +..+..+++.-+ .+ .+ .+ .....+++.++.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999998755 666776665421 11 00 00 01122345666666
Q ss_pred hCCCeEEEEcCcch
Q 010809 321 ENAPCIVFVDEIDA 334 (500)
Q Consensus 321 ~~~p~IIfIDEID~ 334 (500)
.....+|+||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45667999987533
No 332
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.43 E-value=0.21 Score=50.48 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=33.0
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHHHHH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAIA 285 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAralA 285 (500)
..+|+++.-.++..+.+.+. -+..|..++.... ...+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAY--GFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 45788875455555544331 1333444443211 122579999999999997765443
No 333
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.41 E-value=0.16 Score=51.63 Aligned_cols=37 Identities=35% Similarity=0.453 Sum_probs=27.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech-hhHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS-EFVE 302 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s-e~~~ 302 (500)
++++..|+|+|||..+-+++.+. +.+++.+... .+..
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 68999999999999998886654 6667766654 4443
No 334
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.38 E-value=0.28 Score=49.48 Aligned_cols=55 Identities=20% Similarity=0.172 Sum_probs=30.9
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHHHH
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAral 284 (500)
.+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||+.+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~--~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAY--GFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 4677765555555544331 1333333333211 12346999999999999875433
No 335
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.38 E-value=0.07 Score=57.53 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=30.1
Q ss_pred cCChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHHh
Q 010809 234 AGVDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 234 ~G~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~e 287 (500)
.-.+.+.+.+..+++.+... .+.+++++|+|+|||..+-.++..
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~----------~~~~ll~~~TGsGKT~~~~~~~~~ 221 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQG----------KKRSLITMATGTGKTVVAFQISWK 221 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTT----------CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcC----------CCceEEEecCCCChHHHHHHHHHH
Confidence 34455666666666554332 236899999999999998777654
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.35 E-value=0.025 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=23.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVP 291 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~p 291 (500)
-+-|.||+|+||||+++.+++.+|..
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchh
Confidence 47899999999999999999987644
No 337
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.32 E-value=0.045 Score=54.60 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
...+.-+.|.||+|+||||+++.+|+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445668999999999999999999864
No 338
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.31 E-value=0.2 Score=51.33 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|+||.|+|||+|.++++.-+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999995443
No 339
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=94.31 E-value=0.46 Score=49.70 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEech
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~s 298 (500)
.+++.+|+|+|||..+-..+-+. +..++.+...
T Consensus 21 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 21 NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 69999999999999876665433 5566666554
No 340
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.30 E-value=0.01 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~ 289 (500)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998764
No 341
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.16 E-value=0.14 Score=48.89 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=29.8
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHHH
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LAr 282 (500)
.+|+++.-.+...+.+.+. .+..+..++.... ...+.+++.+|+|+|||..+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQL--GWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 4688875444444433321 1233433433211 123579999999999998654
No 342
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.12 E-value=0.071 Score=57.73 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=31.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC----CCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG----VPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~----~pfi~is~se~~~ 302 (500)
+..+.|.|++|+|||||++++|+.++ ..+..+++.++.+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 34689999999999999999999874 3565677776654
No 343
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.11 E-value=0.032 Score=55.90 Aligned_cols=31 Identities=26% Similarity=0.489 Sum_probs=24.7
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcCCCE
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 292 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~~pf 292 (500)
+....+.|+||+|+|||+|++.+++.....+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 3344689999999999999999998763333
No 344
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.10 E-value=0.19 Score=53.61 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.5
Q ss_pred CceEEEEcCCCChHHHHH
Q 010809 264 PKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LA 281 (500)
.+.+++.+|+|+|||+.+
T Consensus 111 ~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCccHHH
Confidence 458999999999999853
No 345
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.08 E-value=0.038 Score=56.53 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.3
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAral 284 (500)
+.+++.+|+|+|||+.+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999955444
No 346
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.08 E-value=0.1 Score=52.58 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCChHHHHHHHHHHhcC-----CCEEEEechhh
Q 010809 262 RIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSISGSEF 300 (500)
Q Consensus 262 ~~p~gvLL~GppGTGKT~LAralA~e~~-----~pfi~is~se~ 300 (500)
..|.-+.|.||+|+||||+++.+++.++ ..+..++...|
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 3455688999999999999999998764 23444554443
No 347
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.07 E-value=0.19 Score=52.66 Aligned_cols=70 Identities=29% Similarity=0.265 Sum_probs=43.7
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhH----H---hh---hh-------h--h-hhHHHHHHHHH
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFV----E---MF---VG-------V--G-ASRVRDLFKKA 319 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~----~---~~---vG-------~--~-~~~vr~lf~~a 319 (500)
.|..+++.|++|+||||++..+|..+ +..+..+++.-+. + .+ .+ . . ....++.++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 46678899999999999999998754 5566666543111 1 11 00 0 1 12235566666
Q ss_pred HhCCCeEEEEcCc
Q 010809 320 KENAPCIVFVDEI 332 (500)
Q Consensus 320 ~~~~p~IIfIDEI 332 (500)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455678898754
No 348
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.99 E-value=0.37 Score=50.63 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEech
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISGS 298 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~s 298 (500)
.+++.+|+|+|||..+-..+-+. +..++.+...
T Consensus 24 ~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 24 NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 69999999999999876665433 5556666543
No 349
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.99 E-value=0.035 Score=52.94 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=25.9
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC--CCEEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG--VPFFSI 295 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~--~pfi~i 295 (500)
+.-+.|.||||+||||+++.+++.++ .+++..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 34588999999999999999999875 465543
No 350
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.98 E-value=0.14 Score=55.14 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCcCcccccCChHHHHHHHHHHHH--hcChhhhhhhCCC-----CCceEEEEcCCCChHHHHH
Q 010809 225 NTGVTFDDVAGVDEAKQDFMEVVEF--LKKPERFTAIGAR-----IPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 225 ~~~~~f~dv~G~de~k~~L~e~v~~--l~~p~~~~~~G~~-----~p~gvLL~GppGTGKT~LA 281 (500)
..+.+|+++.........+.+.+.. +..+..++...+. ..+.+++.+|+|+|||..+
T Consensus 14 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 14 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 3456777765322233334444433 2333333332211 3457999999999999853
No 351
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.90 E-value=0.12 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.710 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..|+|.|.||+|||+|..++.+.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 36999999999999999999764
No 352
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.88 E-value=0.045 Score=47.74 Aligned_cols=21 Identities=52% Similarity=0.947 Sum_probs=19.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
.+++.|++|+|||+|.+++.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999999965
No 353
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.85 E-value=0.22 Score=49.76 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCC---CCceEEEEcCCCChHHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~---~p~gvLL~GppGTGKT~LAr 282 (500)
...+|+++.=.+...+.+... -+..+..++..... ..+.+++.+|+|+|||..+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGY--GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 345788875455555544431 13334333332111 12469999999999998743
No 354
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.84 E-value=0.058 Score=64.25 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|+||+|+|||+|++.+.++.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cEEEEEecCCCcHHHHHHHhcccc
Confidence 358999999999999999999865
No 355
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.81 E-value=0.058 Score=48.51 Aligned_cols=25 Identities=24% Similarity=0.565 Sum_probs=21.8
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
...+++.|++|+|||+|..++++..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3469999999999999999998754
No 356
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.76 E-value=0.14 Score=55.10 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||++++++..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999843
No 357
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.75 E-value=0.14 Score=53.89 Aligned_cols=23 Identities=39% Similarity=0.356 Sum_probs=19.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
+-.++.|+||||||++...++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 35789999999999999888754
No 358
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.71 E-value=0.059 Score=57.16 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.++|+||+|+|||+|+..++..
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~ 174 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHN 174 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhh
Confidence 4899999999999999988764
No 359
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.70 E-value=0.17 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|++.|++|+|||+|++.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 59999999999999999887654
No 360
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.69 E-value=0.065 Score=54.88 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
...|.-+.|.||+|+||||+++.+|+.+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455678999999999999999999864
No 361
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.67 E-value=0.036 Score=55.16 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.7
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~ 289 (500)
+.-+.|.||+|+|||||++.+++..+
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34588999999999999999999765
No 362
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.58 E-value=0.044 Score=50.24 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
+..-+.|.|++|+|||++++.+++.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34468999999999999999998763
No 363
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.56 E-value=0.37 Score=54.27 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=25.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
|.++++.||+|+|||..+-..+-+. +...+.+...
T Consensus 389 ~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 389 PMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp CCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 4579999999999999886654432 5666666544
No 364
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.42 E-value=0.024 Score=54.72 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=25.1
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPFF 293 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-~~pfi 293 (500)
+.-|.|.|++|+||||+++.++..+ +.+++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 4468999999999999999999998 44444
No 365
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.39 E-value=0.051 Score=51.65 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc-CCCE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA-GVPF 292 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~-~~pf 292 (500)
|+-+.|.|++|+||||+++.++..+ +..+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 4468999999999999999999998 4433
No 366
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.29 E-value=0.049 Score=54.59 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+.-+.|.||+|+|||||++.+++..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34458899999999999999999865
No 367
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.26 E-value=0.2 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
.-+.|+||.|+|||++.|.+++-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 36899999999999999999873
No 368
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=93.26 E-value=0.2 Score=52.08 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=22.2
Q ss_pred ceEEEEcCCCChHHHHH-HHHHH---hcCCCEEEEec
Q 010809 265 KGVLLVGPPGTGKTLLA-KAIAG---EAGVPFFSISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LA-ralA~---e~~~pfi~is~ 297 (500)
+.+++.||+|+|||..+ .++.. ..+...+.+..
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 47999999999999986 43432 23445555544
No 369
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=93.24 E-value=0.62 Score=43.72 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=15.3
Q ss_pred ceEEEEcCCCChHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAr 282 (500)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 469999999999998643
No 370
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=93.21 E-value=0.23 Score=54.31 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+-|.||.|+|||||.+.+++..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999999854
No 371
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.17 E-value=0.17 Score=45.57 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|++.|++|+|||+|..++.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998754
No 372
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.10 E-value=0.2 Score=54.08 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=31.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhhHH
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEFVE 302 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~pfi~is~se~~~ 302 (500)
+.-++|+|++|+|||++|+.++..+ |.++..+++..+..
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 4568999999999999999999865 56777777765543
No 373
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.07 E-value=0.23 Score=59.16 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+-|+||+|+|||||++.+.+-.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 48899999999999999998743
No 374
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.06 E-value=0.26 Score=47.44 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..|++.|.+|+|||+|..++.+.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998743
No 375
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.02 E-value=0.06 Score=57.75 Aligned_cols=27 Identities=11% Similarity=-0.010 Sum_probs=24.2
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGV 290 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~ 290 (500)
+..|+|.|.+|+||||+|+++|..++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999874
No 376
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.98 E-value=0.052 Score=50.20 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.5
Q ss_pred CceEEEEcCCCChHHHHHHHHHHh
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e 287 (500)
.++++|.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 358999999999999999999874
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.94 E-value=0.066 Score=53.47 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCChHHHHHHHHHHhc
Q 010809 263 IPKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 263 ~p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+.-+.|.||+|+||||+++.+|+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35578999999999999999999864
No 378
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=92.92 E-value=0.17 Score=48.67 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=15.8
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra 283 (500)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3689999999999987543
No 379
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.77 E-value=0.51 Score=43.15 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|+|.|++|+|||+|..++.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
No 380
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.77 E-value=0.043 Score=51.66 Aligned_cols=22 Identities=50% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||.|+|||||++.+++.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999874
No 381
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.75 E-value=0.051 Score=52.33 Aligned_cols=24 Identities=38% Similarity=0.693 Sum_probs=21.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||.|+|||||.+.+++-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999854
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.72 E-value=0.069 Score=48.84 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=25.0
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is 296 (500)
+-+.+.|++|+|||+++..++..+ +..+-.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 368899999999999999998764 45554444
No 383
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.69 E-value=0.054 Score=51.85 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 58899999999999999999854
No 384
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.27 Score=57.46 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=24.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc---CCCEEEEech
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGS 298 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~---~~pfi~is~s 298 (500)
.+++++|+|+|||+.+...+-+. +...+++...
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 79999999999999876554433 5556666543
No 385
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.65 E-value=0.042 Score=52.20 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 386
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.61 E-value=0.044 Score=52.60 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||+|+|||||++.+++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999999853
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.58 E-value=0.074 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcC
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAG 289 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~ 289 (500)
-.+|+||.|+|||++++|++.-++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999999988664
No 388
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.55 E-value=0.34 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||||+|||+|.+++++..
T Consensus 57 ~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 57 RVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999998754
No 389
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.51 E-value=0.55 Score=40.46 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.|++|+|||+|..++.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999764
No 390
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.48 E-value=0.09 Score=48.59 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..+++.|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998875
No 391
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=92.40 E-value=0.53 Score=47.24 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=30.0
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhhC-----CCCCceEEEEcCCCChHHHHHH
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIG-----ARIPKGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G-----~~~p~gvLL~GppGTGKT~LAr 282 (500)
.+|+++.-.+...+.+.+. .+..|..++... ...++.+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 4577765445545444331 123333333211 1124689999999999998753
No 392
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.37 E-value=0.072 Score=48.58 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.|++|+|||+|.+.+++.
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999985
No 393
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=92.36 E-value=0.19 Score=47.33 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|+|.|++|+|||+|..++.+.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5999999999999999999874
No 394
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=92.31 E-value=1 Score=50.42 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEec
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~ 297 (500)
+++++.+|+|+|||..+-..+-+. +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999999877665543 566666654
No 395
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.28 E-value=0.45 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 396
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.23 E-value=0.07 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.|++|+|||+|.+.+++..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999999854
No 397
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.22 E-value=0.5 Score=54.75 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=18.7
Q ss_pred ceEEEEcCCCChHHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAral 284 (500)
.-++|+||.|+|||++.|.+
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 46899999999999999999
No 398
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.20 E-value=0.057 Score=51.15 Aligned_cols=23 Identities=43% Similarity=0.495 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999854
No 399
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.16 E-value=0.068 Score=52.06 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 400
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=92.16 E-value=0.43 Score=43.53 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 401
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.15 E-value=0.068 Score=51.63 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||.|+|||||.+.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999994
No 402
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=92.14 E-value=0.36 Score=45.69 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.8
Q ss_pred eEEEEcCCCChHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 266 gvLL~GppGTGKT~LAr 282 (500)
.+++.+|+|+|||..+-
T Consensus 62 ~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 69999999999998643
No 403
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.11 E-value=0.058 Score=52.32 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999998843
No 404
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.08 E-value=0.068 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||.|+|||||.+.+++.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999884
No 405
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=92.05 E-value=0.3 Score=48.13 Aligned_cols=53 Identities=19% Similarity=0.250 Sum_probs=30.2
Q ss_pred CcCcccccCChHHHHHHHHHHHHhcChhhhhhh-----CCCCCceEEEEcCCCChHHHHH
Q 010809 227 GVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAI-----GARIPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 227 ~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~-----G~~~p~gvLL~GppGTGKT~LA 281 (500)
..+|+++.-.+...+.|.+. .+..|..++.. -...++.+++++|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 35677775445544444321 13333333321 1113468999999999999864
No 406
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=92.04 E-value=0.57 Score=48.41 Aligned_cols=54 Identities=15% Similarity=0.092 Sum_probs=30.5
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCCC---CCceEEEEcCCCChHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGAR---IPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~~---~p~gvLL~GppGTGKT~LA 281 (500)
+-.+|+++.-.+...+.+.+. .+..|..++....+ ..+.+++.+|+|+|||+..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~--g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKS--GYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHT--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 345788864444444433321 13444444432211 2357999999999999853
No 407
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.01 E-value=0.081 Score=53.73 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCC
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVP 291 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~p 291 (500)
.-+.|.||+|+|||||++.+++.....
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 458999999999999999999987543
No 408
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=92.00 E-value=0.95 Score=49.35 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.2
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
++++.+|+|+|||+.+-..+-
T Consensus 30 ~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 30 NTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEcCCCchHHHHHHHHHH
Confidence 799999999999998776654
No 409
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.99 E-value=0.062 Score=51.59 Aligned_cols=23 Identities=48% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
No 410
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.96 E-value=0.085 Score=45.80 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.|++|+|||+|+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 411
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.95 E-value=0.15 Score=48.00 Aligned_cols=31 Identities=29% Similarity=0.325 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSI 295 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~i 295 (500)
.-|.|.|++|+||||+++.++..+ +.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 357889999999999999998866 5666544
No 412
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.89 E-value=0.09 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=20.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||.|+|||||.+.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999995
No 413
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.89 E-value=0.064 Score=51.78 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+++-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998853
No 414
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.87 E-value=0.078 Score=51.59 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|.||.|+|||||.+.+++..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 358899999999999999998854
No 415
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.85 E-value=0.082 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+.|.||+|+|||||.+.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 416
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.84 E-value=0.058 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=21.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.+.|.|++|+|||||++.+++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 417
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.82 E-value=0.094 Score=45.25 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.|++|+|||+|+.++++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999875
No 418
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=91.80 E-value=0.56 Score=54.27 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh---cCCCEEEEech
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE---AGVPFFSISGS 298 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e---~~~pfi~is~s 298 (500)
++++.+|+|+|||..+...... .+...+++...
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 6999999999999987544332 35667766654
No 419
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=91.80 E-value=0.72 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCcCcccccCChHHHHHHHHHHHHhcChhhhhhhCC---CCCceEEEEcCCCChHHHHH
Q 010809 226 TGVTFDDVAGVDEAKQDFMEVVEFLKKPERFTAIGA---RIPKGVLLVGPPGTGKTLLA 281 (500)
Q Consensus 226 ~~~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~G~---~~p~gvLL~GppGTGKT~LA 281 (500)
+-.+|+++.=.+...+.+... .+..|..++.... ...+.+++.+|+|+|||+.+
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~--~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELT--RYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHH--TCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHC--CCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 345688874444444443321 1334433333211 12357999999999999844
No 420
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.79 E-value=0.074 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999854
No 421
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.77 E-value=0.071 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999843
No 422
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=91.77 E-value=0.52 Score=49.07 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=30.0
Q ss_pred cCcccccCChHHHHHHHHHHHHhcChhhhhhh-----CCCCCceEEEEcCCCChHHHHHH
Q 010809 228 VTFDDVAGVDEAKQDFMEVVEFLKKPERFTAI-----GARIPKGVLLVGPPGTGKTLLAK 282 (500)
Q Consensus 228 ~~f~dv~G~de~k~~L~e~v~~l~~p~~~~~~-----G~~~p~gvLL~GppGTGKT~LAr 282 (500)
.+|+++.-.++..+.+.+. .+..|..++.. -...++.+++.+|+|+|||..+-
T Consensus 92 ~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAM--GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHT--TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHc--CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 4677765555555444331 12333222221 11234689999999999998743
No 423
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=91.77 E-value=0.7 Score=48.88 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.1
Q ss_pred ceEEEEcCCCChHHHHHHH
Q 010809 265 KGVLLVGPPGTGKTLLAKA 283 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAra 283 (500)
+.+++.+|+|+|||..+-.
T Consensus 159 ~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCEEEECCSSTTSHHHHHH
T ss_pred CCEEEECCCCccHHHHHHH
Confidence 5799999999999987543
No 424
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.74 E-value=0.55 Score=55.74 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+-|+||+|+|||+|++.+++.
T Consensus 1061 ~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A 1061 TLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp EEEEECSSSTTHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999884
No 425
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.72 E-value=0.11 Score=47.67 Aligned_cols=24 Identities=25% Similarity=0.591 Sum_probs=21.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
..+++.|++|+|||+|+.++++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998854
No 426
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.72 E-value=0.082 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.563 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 58899999999999999999854
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.71 E-value=0.38 Score=43.15 Aligned_cols=22 Identities=36% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 428
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.69 E-value=0.35 Score=43.20 Aligned_cols=23 Identities=43% Similarity=0.592 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
.-+++.|++|+|||+|.+++.+.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999764
No 429
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.67 E-value=0.084 Score=51.71 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||++.+++..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999998843
No 430
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.65 E-value=0.35 Score=48.67 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~ 288 (500)
+.-+.+.|+||+|||+++.+++...
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999998753
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.62 E-value=0.071 Score=51.64 Aligned_cols=23 Identities=43% Similarity=0.655 Sum_probs=21.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999865
No 432
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=91.59 E-value=0.6 Score=55.41 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+.|+||+|+|||||++.+++..
T Consensus 417 ~~~~ivG~sGsGKSTl~~ll~g~~ 440 (1284)
T 3g5u_A 417 QTVALVGNSGCGKSTTVQLMQRLY 440 (1284)
T ss_dssp CEEEEECCSSSSHHHHHHHTTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999998855
No 433
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.58 E-value=0.39 Score=43.25 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 434
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.48 E-value=0.074 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999999853
No 435
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.48 E-value=0.086 Score=53.91 Aligned_cols=23 Identities=48% Similarity=0.700 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999999843
No 436
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.45 E-value=0.091 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998843
No 437
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.40 E-value=1.3 Score=52.10 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=32.6
Q ss_pred ChHHHHHHHHHHHHhcChhhhhhhCCCCCceEEEEcCCCChHHHHHHHHHH---hcCCCEEEEech
Q 010809 236 VDEAKQDFMEVVEFLKKPERFTAIGARIPKGVLLVGPPGTGKTLLAKAIAG---EAGVPFFSISGS 298 (500)
Q Consensus 236 ~de~k~~L~e~v~~l~~p~~~~~~G~~~p~gvLL~GppGTGKT~LAralA~---e~~~pfi~is~s 298 (500)
.+.+++.+..++..+... .|..++++||+|+|||..|-..|- ..+..++.+...
T Consensus 605 t~~Q~~ai~~il~~~~~g---------~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt 661 (1151)
T 2eyq_A 605 TPDQAQAINAVLSDMCQP---------LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 661 (1151)
T ss_dssp CHHHHHHHHHHHHHHHSS---------SCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CHHHHHHHHHHHHHHhcC---------CcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEech
Confidence 344555555555544322 245799999999999988754432 235555555443
No 438
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.39 E-value=0.092 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.|++|+|||+|.+++++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
No 439
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=91.37 E-value=0.13 Score=49.10 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=21.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-------CCCEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA-------GVPFFSI 295 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~-------~~pfi~i 295 (500)
-|.|.|++|+||||+++.++..+ +.+++..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 47889999999999999998866 6666544
No 440
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=91.37 E-value=1.4 Score=50.35 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=25.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc--------CCCEEEEec
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA--------GVPFFSISG 297 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~--------~~pfi~is~ 297 (500)
+.+++.+|+|+|||..+-..+.+. +.+++.+..
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 479999999999999887776554 566666655
No 441
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.33 E-value=0.09 Score=53.89 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.6
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999843
No 442
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.33 E-value=0.091 Score=53.79 Aligned_cols=22 Identities=45% Similarity=0.581 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||+|+|||||.+.+|+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999984
No 443
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.32 E-value=0.11 Score=44.71 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 444
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.28 E-value=0.079 Score=47.66 Aligned_cols=22 Identities=32% Similarity=0.601 Sum_probs=19.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-++|.|++|+|||+|.+.+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999873
No 445
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.28 E-value=0.11 Score=44.72 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.|++|+|||+|+.++.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
No 446
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.20 E-value=0.2 Score=46.29 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
.-+++.|.+|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998864
No 447
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=91.17 E-value=0.38 Score=49.92 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=24.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc-----CCCEEEE
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSI 295 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~-----~~pfi~i 295 (500)
-++|.||+|+|||+|++.+++.. ++.++++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 59999999999999999998753 4445554
No 448
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.16 E-value=0.096 Score=53.85 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999999843
No 449
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.15 E-value=0.12 Score=49.66 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=23.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc---CCC
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA---GVP 291 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~---~~p 291 (500)
+.-|.|.|++|+|||++++.++..+ +.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 4468899999999999999998865 555
No 450
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.12 E-value=0.1 Score=46.87 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.7
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..+++.|++|+|||+|..++.+.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999764
No 451
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.10 E-value=0.081 Score=53.93 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||+|+|||||.+.+|+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999999843
No 452
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.10 E-value=0.13 Score=44.51 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999874
No 453
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=91.10 E-value=0.53 Score=52.12 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=18.3
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~ 288 (500)
+.+++.||+|+|||+.|-....+.
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~ 179 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSA 179 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc
Confidence 479999999999999665444433
No 454
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.08 E-value=0.21 Score=47.32 Aligned_cols=30 Identities=23% Similarity=0.134 Sum_probs=25.3
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhcCCCEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFF 293 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~~~pfi 293 (500)
++-+.+.|++|+|||++++.++..++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 345889999999999999999999876443
No 455
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.08 E-value=0.13 Score=44.69 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 456
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.03 E-value=0.088 Score=51.42 Aligned_cols=23 Identities=48% Similarity=0.836 Sum_probs=20.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999864
No 457
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.01 E-value=0.11 Score=45.62 Aligned_cols=22 Identities=55% Similarity=0.860 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|.+++.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 5999999999999999999764
No 458
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.99 E-value=0.1 Score=57.05 Aligned_cols=32 Identities=34% Similarity=0.505 Sum_probs=22.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEec
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISG 297 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~----~~pfi~is~ 297 (500)
..++.||||||||+++..++..+ +.+++.+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~ 232 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP 232 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEES
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999887775532 345554443
No 459
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.93 E-value=0.44 Score=42.57 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999763
No 460
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.91 E-value=0.13 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|++.|++|+|||+|.+++.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998753
No 461
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=90.88 E-value=0.57 Score=49.13 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=24.5
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc----CCCEEEEech
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA----GVPFFSISGS 298 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~----~~pfi~is~s 298 (500)
.++++||+|+|||..+-.++... +.+++.+...
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~ 166 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPT 166 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESS
T ss_pred CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 68999999999999997766542 3366666543
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.85 E-value=0.12 Score=46.13 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.++|.|++|+|||+|.+++++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999874
No 463
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=90.76 E-value=0.16 Score=44.69 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.5
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..|++.|++|+|||+|..++.+.
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999763
No 464
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.76 E-value=0.14 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 465
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.75 E-value=0.6 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|+..+.+.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5999999999999999999763
No 466
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.75 E-value=0.14 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 467
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.69 E-value=0.13 Score=44.64 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 468
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.69 E-value=0.13 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 469
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=90.68 E-value=0.18 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..|++.|++|+|||+|..++.+.
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999763
No 470
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.64 E-value=0.14 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999774
No 471
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.60 E-value=0.15 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 472
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.59 E-value=4.5 Score=37.31 Aligned_cols=138 Identities=13% Similarity=0.192 Sum_probs=70.3
Q ss_pred EEEEcCCCChHHHHHHHHHHhc---CCCEEEEechhh--HHhhhhhhhh---------HHHHHHHHHHhCC------Ce-
Q 010809 267 VLLVGPPGTGKTLLAKAIAGEA---GVPFFSISGSEF--VEMFVGVGAS---------RVRDLFKKAKENA------PC- 325 (500)
Q Consensus 267 vLL~GppGTGKT~LAralA~e~---~~pfi~is~se~--~~~~vG~~~~---------~vr~lf~~a~~~~------p~- 325 (500)
|.+.|..|+|||++|-.+|..+ |..+..+++.-- ...+.|.... .+.+++....... +.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPDSCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILNPKV 82 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTTSCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSSCCC
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcChHHHhCCCcccccccccchhHHHHHHhhccCCcccccCCch
Confidence 4559999999999999998865 778888876531 1223332221 1344444431110 00
Q ss_pred -------EEEEcCcch-hhhcc-CCCCCCCChHHHHHHHHHHHHh-cCCCCCCCeEEEEeeCCCCCCchhhcCCCCcceE
Q 010809 326 -------IVFVDEIDA-VGRQR-GTGIGGGNDEREQTLNQLLTEM-DGFEGNTGIIVIAATNRADILDSALLRPGRFDRQ 395 (500)
Q Consensus 326 -------IIfIDEID~-l~~~r-~~~~~~~~~e~~~~L~~LL~em-d~~~~~~~viVIaaTN~~~~Ld~aLlrpgRfdr~ 395 (500)
.+--++++- +.... .....+........+..++..+ . ..-.++||=+...........+. ..|..
T Consensus 83 ~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~---~~yD~viiD~pp~~~~~~~~~l~--~aD~v 157 (254)
T 3kjh_A 83 DGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFL---DKKEAVVMDMGAGIEHLTRGTAK--AVDMM 157 (254)
T ss_dssp TTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHH---TCCSEEEEEECTTCTTCCHHHHT--TCSEE
T ss_pred hccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhcc---CCCCEEEEeCCCcccHHHHHHHH--HCCEE
Confidence 001112221 11000 0000111111224566677666 3 23457777665544445555555 67877
Q ss_pred EEecCCCHHHHHHH
Q 010809 396 VTVDVPDIRGRTEI 409 (500)
Q Consensus 396 I~v~~Pd~~eR~~I 409 (500)
+.+-.|+......+
T Consensus 158 iiv~~~~~~s~~~~ 171 (254)
T 3kjh_A 158 IAVIEPNLNSIKTG 171 (254)
T ss_dssp EEEECSSHHHHHHH
T ss_pred EEecCCCHHHHHHH
Confidence 77778887665443
No 473
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.55 E-value=0.15 Score=44.13 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.+++.|++|+|||+|.+++.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 474
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.54 E-value=0.12 Score=44.94 Aligned_cols=21 Identities=48% Similarity=0.787 Sum_probs=19.1
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
.+++.|++|+|||+|..++.+
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999964
No 475
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=90.47 E-value=0.15 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|+.++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999873
No 476
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.47 E-value=0.15 Score=44.83 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5999999999999999999753
No 477
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.47 E-value=0.17 Score=47.76 Aligned_cols=29 Identities=24% Similarity=0.188 Sum_probs=23.6
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 294 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~ 294 (500)
.-+.|.|+.|+||||+++.+++. +..+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 35789999999999999999987 444443
No 478
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.45 E-value=0.081 Score=53.98 Aligned_cols=22 Identities=41% Similarity=0.690 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||+|+|||||.+.+|+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999999984
No 479
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.45 E-value=0.53 Score=50.24 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=20.4
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhcCCCEEEE
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEAGVPFFSI 295 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~~~pfi~i 295 (500)
+.+++.+|+|+|||+.+..-+-..+...+.+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi 71 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVV 71 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEE
Confidence 3699999999999986654443333333434
No 480
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.38 E-value=0.17 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.8
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
..|++.|++|+|||+|+.++.+.
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999874
No 481
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.23 E-value=0.12 Score=53.44 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.||+|+|||||.+.+++-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5899999999999999999983
No 482
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.21 E-value=0.4 Score=56.02 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.0
Q ss_pred eEEEEcCCCChHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAI 284 (500)
Q Consensus 266 gvLL~GppGTGKT~LAral 284 (500)
.+++++|+|+|||+.+-..
T Consensus 95 dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 95 SFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp CEEECCSTTCCHHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHHH
Confidence 6999999999999965444
No 483
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.12 E-value=0.17 Score=44.33 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 484
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.09 E-value=0.16 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=20.1
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999863
No 485
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.06 E-value=0.19 Score=47.93 Aligned_cols=31 Identities=26% Similarity=0.245 Sum_probs=24.6
Q ss_pred CceEEEEcCCCChHHHHHHHHHHhc----CCCEEE
Q 010809 264 PKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFS 294 (500)
Q Consensus 264 p~gvLL~GppGTGKT~LAralA~e~----~~pfi~ 294 (500)
+.-|.|.|++|+|||++++.++..+ +.+++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 4458889999999999999998865 335554
No 486
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.03 E-value=0.29 Score=49.98 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=25.1
Q ss_pred ceEEEEcCCCChHHHHHHHHHHhc---CCCEEEEe
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGEA---GVPFFSIS 296 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e~---~~pfi~is 296 (500)
.++++.||+|+|||++++.++... +..++.++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 379999999999999999997643 55555554
No 487
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.01 E-value=0.19 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.8
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
-+.|.||+|+|||||.+++++
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 578999999999999999998
No 488
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.96 E-value=0.17 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.7
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
.|++.|++|+|||+|..++.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998743
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=89.95 E-value=0.18 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|+.++++.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999875
No 490
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.94 E-value=0.14 Score=50.74 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.8
Q ss_pred eEEEEcCCCChHHHHHHHHHHhc
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEA 288 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~ 288 (500)
-+.|.||.|+|||||.+.+++..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 48899999999999999999854
No 491
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.92 E-value=0.21 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.374 Sum_probs=20.9
Q ss_pred ceEEEEcCCCChHHHHHHHHHHh
Q 010809 265 KGVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 265 ~gvLL~GppGTGKT~LAralA~e 287 (500)
-.|++.|++|+|||+|..++.+.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 492
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.91 E-value=0.18 Score=44.52 Aligned_cols=22 Identities=32% Similarity=0.527 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5999999999999999999874
No 493
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.90 E-value=0.16 Score=45.21 Aligned_cols=22 Identities=41% Similarity=0.738 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
-+.|.|+||+|||+|.+++++.
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 494
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=89.89 E-value=1.8 Score=47.58 Aligned_cols=34 Identities=29% Similarity=0.449 Sum_probs=28.9
Q ss_pred eEEEEcCCCChHHHHHHHHHHhcCCCEEEEechh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGEAGVPFFSISGSE 299 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e~~~pfi~is~se 299 (500)
..+|.|.+|+|||.++..++.+.+.|++.+....
T Consensus 30 ~~~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~~ 63 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAKVIEALGRPALVLAPNK 63 (664)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSH
T ss_pred cEEEEcCCCcHHHHHHHHHHHHhCCCEEEEecCH
Confidence 3678999999999999988888888988876644
No 495
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.88 E-value=0.17 Score=44.47 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=20.4
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999875
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=89.84 E-value=0.36 Score=45.41 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred CCCCceEEEEcCCCChHHHHHHHHHHhcCC-CEEEEechhhH
Q 010809 261 ARIPKGVLLVGPPGTGKTLLAKAIAGEAGV-PFFSISGSEFV 301 (500)
Q Consensus 261 ~~~p~gvLL~GppGTGKT~LAralA~e~~~-pfi~is~se~~ 301 (500)
..+++-|+|+|.||+||+++|+.+.+..+. .+..++.++-+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 345567899999999999999999886653 24445666544
No 497
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.81 E-value=0.18 Score=45.25 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999874
No 498
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.78 E-value=0.17 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|++.+.+.
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 499
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.76 E-value=0.18 Score=44.36 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=20.2
Q ss_pred eEEEEcCCCChHHHHHHHHHHh
Q 010809 266 GVLLVGPPGTGKTLLAKAIAGE 287 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~e 287 (500)
.|++.|++|+|||+|..++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5999999999999999999874
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=89.73 E-value=0.4 Score=43.17 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.3
Q ss_pred eEEEEcCCCChHHHHHHHHHH
Q 010809 266 GVLLVGPPGTGKTLLAKAIAG 286 (500)
Q Consensus 266 gvLL~GppGTGKT~LAralA~ 286 (500)
.|++.|++|+|||+|..++.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999999965
Done!