Query 010811
Match_columns 500
No_of_seqs 307 out of 2480
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 04:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00164 bifunctional dihydrof 100.0 2E-126 5E-131 1018.8 47.0 479 10-498 1-485 (514)
2 KOG0673 Thymidylate synthase [ 100.0 3.3E-92 7.1E-97 665.6 21.0 259 240-498 6-264 (293)
3 TIGR03284 thym_sym thymidylate 100.0 7.7E-86 1.7E-90 657.4 22.4 246 245-498 1-267 (296)
4 PRK13821 thyA thymidylate synt 100.0 8E-85 1.7E-89 655.2 23.2 252 244-498 1-283 (323)
5 PRK01827 thyA thymidylate synt 100.0 3E-81 6.5E-86 620.3 22.0 235 244-498 1-235 (264)
6 COG0207 ThyA Thymidylate synth 100.0 6E-80 1.3E-84 601.5 22.7 234 244-497 3-238 (268)
7 PF00303 Thymidylat_synt: Thym 100.0 9.4E-72 2E-76 558.3 20.1 239 244-497 1-239 (269)
8 cd00351 TS_Pyrimidine_HMase Th 100.0 2.8E-66 6.1E-71 502.8 18.3 214 246-480 1-215 (215)
9 PRK00956 thyA thymidylate synt 100.0 2.9E-46 6.2E-51 360.7 18.0 199 241-484 8-207 (208)
10 TIGR03283 thy_syn_methano thym 100.0 2.9E-44 6.2E-49 344.3 16.7 192 241-478 6-198 (199)
11 KOG1324 Dihydrofolate reductas 100.0 2.7E-43 5.9E-48 323.4 15.2 180 21-200 1-180 (190)
12 PF00186 DHFR_1: Dihydrofolate 100.0 1.4E-41 2.9E-46 316.1 18.1 159 23-200 1-161 (161)
13 PRK10769 folA dihydrofolate re 100.0 1.2E-39 2.7E-44 302.4 17.6 156 24-201 2-159 (159)
14 COG0262 FolA Dihydrofolate red 100.0 1.5E-36 3.2E-41 284.3 19.0 164 23-200 1-166 (167)
15 cd00209 DHFR Dihydrofolate red 100.0 3.2E-31 7E-36 245.9 18.6 158 24-199 1-158 (158)
16 PRK00478 scpA segregation and 100.0 3.5E-31 7.7E-36 284.7 17.1 156 23-203 1-156 (505)
17 PF01872 RibD_C: RibD C-termin 99.6 4.9E-15 1.1E-19 142.0 13.6 152 22-183 1-192 (200)
18 PRK05625 5-amino-6-(5-phosphor 99.4 1.6E-11 3.5E-16 119.5 18.5 164 22-201 3-216 (217)
19 TIGR00227 ribD_Cterm riboflavi 99.4 1.2E-11 2.6E-16 120.0 16.3 138 22-170 3-185 (216)
20 TIGR00326 eubact_ribD riboflav 99.2 9.5E-11 2.1E-15 122.0 14.4 134 21-164 140-307 (344)
21 PRK14059 hypothetical protein; 99.0 4.5E-08 9.7E-13 97.8 19.7 167 21-201 30-250 (251)
22 TIGR01508 rib_reduct_arch 2,5- 98.8 3.8E-07 8.2E-12 88.7 18.7 137 23-170 2-180 (210)
23 PRK14719 bifunctional RNAse/5- 98.4 1.3E-05 2.9E-10 84.0 19.2 135 21-165 139-316 (360)
24 COG1985 RibD Pyrimidine reduct 98.4 2.3E-05 5.1E-10 76.8 18.1 142 21-172 3-187 (218)
25 PRK10786 ribD bifunctional dia 98.3 1.6E-05 3.4E-10 83.8 15.5 134 21-164 146-327 (367)
26 PLN02807 diaminohydroxyphospho 97.5 0.0025 5.3E-08 67.6 15.2 131 21-165 175-346 (380)
27 PRK00536 speE spermidine synth 33.8 23 0.0005 35.9 1.6 43 129-173 72-118 (262)
28 PF08353 DUF1727: Domain of un 32.9 67 0.0014 28.3 4.2 85 24-137 22-108 (113)
29 PHA03370 virion protein US2; P 31.2 1.5E+02 0.0033 29.7 6.6 54 113-166 113-167 (269)
30 KOG4101 Cysteine-rich hydropho 22.9 1.1E+02 0.0023 28.3 3.7 58 265-324 43-113 (175)
No 1
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=100.00 E-value=2.2e-126 Score=1018.82 Aligned_cols=479 Identities=52% Similarity=0.916 Sum_probs=434.5
Q ss_pred cCCCcccCCCCcceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccc------CCCCCCcEEEEccccccccCCCC
Q 010811 10 SNGNVSTQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT------SDAGKRNAVIMGRKTWESIPLEH 83 (500)
Q Consensus 10 ~~~~~~~~~~~mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~------~~~~~~~~vIMGRkTyeslp~~~ 83 (500)
|||+++ ++++++|+|++.+|+||.+|+|||++|+||+||+++|+.+ ++|+++++|||||||||++|...
T Consensus 1 ~~~~~~-----~~~i~lIvA~~~n~~IG~~g~LPW~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip~~~ 75 (514)
T PTZ00164 1 SEDYSS-----LKDFSIVVAVTLKRGIGIGNSLPWHIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIPKKF 75 (514)
T ss_pred Cccccc-----CCCEEEEEEECCCCCeeCCCCCCcCCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhhhhc
Confidence 566666 6899999999999999999999999999999999999843 46888999999999999998656
Q ss_pred CCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc
Q 010811 84 RPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI 163 (500)
Q Consensus 84 ~pl~~R~nIVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~ 163 (500)
+|||+|.||||||+.... ...+++.+++|+++|++.+++.+ +.++||||||++||+++|++++||+++||+|+..+
T Consensus 76 rPLp~R~nIVLSr~~~~~-~~~~~v~v~~sl~eal~~lk~~~---~~~dI~VIGG~~Iy~~~L~~~lvDel~LTvI~~~g 151 (514)
T PTZ00164 76 RPLKNRINVVLSRTLTEE-EADPGVLVFGSLEDALRLLAEDL---SIEKIFIIGGASVYREALSANLLDKIYLTRVNSEY 151 (514)
T ss_pred cccCCCeEEEEcCCCCcc-cCCCCEEEeCCHHHHHHHHhccC---CCCcEEEEchHHHHHHHhcCCCCCEEEEEEEEecc
Confidence 899999999999987531 12356889999999999998642 35789999999999999999999999999997777
Q ss_pred cCcccCCCCCCCCcEEeeeecCceecCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChh
Q 010811 164 ECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHE 243 (500)
Q Consensus 164 ~Gd~fFP~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (500)
+||+|||.++.+.|++++++....++++.|+|++|+|++.++.+. ..+.....+..+.+.-+....|.++|+..+++|+
T Consensus 152 eGD~~FP~~~~~~~~l~~~s~~~~~~~v~y~f~~y~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T PTZ00164 152 ECDVFFPKIPESFFIVAIVSQTFSTNGTSYDFVIYEKKNDDEEDL-LGKIFGQMKMTGRKKSPKEQLYKACPSLKIREHE 230 (514)
T ss_pred ccCccCCCCCchhcEEEEEEEeccCCCceEEEEEEeccCcchhcc-ccccccccccccccccccccccccCccccccCCc
Confidence 999999999887799887555556678899999999986444332 2333333334444343343567889999999999
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|+|||++|++||++|+.+.||||+||+++||++|||||+++||++||||++||++++||||||+|+||+++|++.||+||
T Consensus 231 ~~~Yl~l~~~Il~~G~~~~~rtG~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~~~EllWfl~g~tn~~~l~~~~~~iW 310 (514)
T PTZ00164 231 EFQYLDLIADIIKNGNVKEDRTGVGTISKFGYQMRFDLRESFPLLTTKKVFLRGIIEELLWFIRGETNGNLLLDKGVRIW 310 (514)
T ss_pred HHHHHHHHHHHHHhCCcCCCCCCCceeeecCceEEEeCCCCCceeeechhhHHHHHHHHHHHHhCCccHHHHHHcCCEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccC
Q 010811 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (500)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (500)
|+|+.++|+++.+++++++|||||+||+|||+||+.|.+|+++|+++++|||++||++||+||+|||+|+++|||.++.+
T Consensus 311 d~w~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~i~~~wn~~d~~~ 390 (514)
T PTZ00164 311 EGNGSREFLDSRGLTHREENDLGPVYGFQWRHFGAEYKDMHDDYTGQGVDQLKNIIETIKNNPDDRRLILTAWNPSALDQ 390 (514)
T ss_pred CCCcccchhcccccccccCCCcccchhhhhhccccccccccccccCCcccHHHHHHHHHhcCCcchheEEEEECHhHhcc
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHH
Q 010811 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (500)
Q Consensus 404 ~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (500)
|+|||||+++||+|++|+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+|+++|+|||+||++++++||
T Consensus 391 ~~l~PC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 470 (514)
T PTZ00164 391 MALPPCHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLRPGEFVHFLGDAHVYSNHVDALKEQL 470 (514)
T ss_pred cCCCCCceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCEeeEEEEEeccceeehhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEecCC
Q 010811 484 QKLPKPFPVSIIIDI 498 (500)
Q Consensus 484 ~r~p~~~P~l~~~~~ 498 (500)
+|+|+++|+|+|||+
T Consensus 471 ~r~p~~~P~l~i~~~ 485 (514)
T PTZ00164 471 ERVPYPFPTLKLKRE 485 (514)
T ss_pred cCCCCCCCeEEECCC
Confidence 999999999999875
No 2
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3.3e-92 Score=665.56 Aligned_cols=259 Identities=76% Similarity=1.324 Sum_probs=256.3
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcC
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~ 319 (500)
.+++|.|||++++.||++|+.+.||||+||+|+||.||||+|++.||+|||||++|+.+++|||||++|+||.+.|.++|
T Consensus 6 ~~~eE~~YL~lv~~Ii~~G~~r~DrtgtgTlSvFg~qmrf~Lr~tfPLLTTKrVfwrgV~EElLwfi~G~t~ak~l~~kg 85 (293)
T KOG0673|consen 6 RNHEEFQYLNLVKHIISNGARRMDRTGTGTLSVFGCQMRFSLRDTFPLLTTKRVFWRGVVEELLWFISGSTDAKVLEEKG 85 (293)
T ss_pred CchhHHHHHHHHHHHHhcCCccCCcCCCceeeeeeeeeeeehhccccchhhhhHHHHHHHHHHHHHHhCCCccchhhhcC
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 010811 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (500)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (500)
++|||+|++|+|||++|+..+++||+||+||+||||||++|.+|++||.++|+|||..||++||+||.+||+|+++|||.
T Consensus 86 v~IWd~ngsrefLds~G~~~re~GDlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~drRIimsAwNP~ 165 (293)
T KOG0673|consen 86 VHIWDGNGSREFLDSVGFTAREEGDLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDDRRIIMSAWNPL 165 (293)
T ss_pred ceeecCCchHHHHHhcCCCccccCCcccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCccceeeeeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHH
Q 010811 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (500)
Q Consensus 400 ~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (500)
|+.+|++||||.+.||+|.+|+|+|.+||||.||.+|+||||++|++|++|||+.||+++|+|+|++|+||||.+|++++
T Consensus 166 dl~~malpPCH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgdfiH~lGdahvy~~Hv~al 245 (293)
T KOG0673|consen 166 DLGKMALPPCHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGDFIHVLGDAHVYKDHVDAL 245 (293)
T ss_pred ccccccCCccceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCceEEecchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEecCC
Q 010811 480 EEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~ 498 (500)
++||.|+|+|||+|.|+|+
T Consensus 246 ~~Ql~r~PrpFPkl~i~~~ 264 (293)
T KOG0673|consen 246 QEQLQRPPRPFPKLKINPE 264 (293)
T ss_pred HHHHhcCCCCCCceeeccc
Confidence 9999999999999999986
No 3
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=7.7e-86 Score=657.38 Aligned_cols=246 Identities=52% Similarity=0.922 Sum_probs=236.3
Q ss_pred HHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCccccc
Q 010811 245 YLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (500)
Q Consensus 245 ~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iWd 324 (500)
+|||++|++||++|+.+.||||+||+++||++|||||+++||++||||++||++++||||||+|+||+++|+++||+|||
T Consensus 1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhcCC--------C-------------CCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHh
Q 010811 325 GNASREYLDSVGL--------T-------------DREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIK 383 (500)
Q Consensus 325 ~~~~~~~~~~~~~--------~-------------~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk 383 (500)
+|+.++|+++.|+ + .+++||+||+||+|||+|++. +++++|||++||++||
T Consensus 81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk 152 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATP--------DGETIDQIKNVIEMIK 152 (296)
T ss_pred CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCC--------CCCchHHHHHHHHHHh
Confidence 9999999998765 1 133799999999999999763 3677999999999999
Q ss_pred cCCCCcceEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEE
Q 010811 384 NNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFI 463 (500)
Q Consensus 384 ~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~ 463 (500)
+||+|||+|+++|||.++.+|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++||+|||++||+++|+|+
T Consensus 153 ~nP~sRR~iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~ 232 (296)
T TIGR03284 153 TNPDSRRLIVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFV 232 (296)
T ss_pred cCCchhheEEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 464 HVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 464 ~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|+++|+|||+||++++++||+|+|+++|+|+|+++
T Consensus 233 h~igdaHIY~nhi~~v~~qL~R~p~~~P~l~i~~~ 267 (296)
T TIGR03284 233 HTLGDAHLYSNHLEQAKLQLTREPRPLPKLKLNPE 267 (296)
T ss_pred EEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 99999999999999999999999999999999875
No 4
>PRK13821 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=8e-85 Score=655.18 Aligned_cols=252 Identities=37% Similarity=0.675 Sum_probs=233.8
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|+|||+||++||++|..+.||||+||+|+||++|||||++|||++||||++||++++|||||++|+||++.|+++|++||
T Consensus 1 m~qYldl~~~Il~~G~~~~dRTGtgt~sifg~~~rfdL~~gfPllTTKkv~~ks~i~ELLWfl~G~tn~~~L~~~~v~IW 80 (323)
T PRK13821 1 MKQYLDLVRTILDTGTWQENRTGIRTISIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRASRSAADFRALGCKVW 80 (323)
T ss_pred CHHHHHHHHHHHHhCCcCCCCCCCccccccCceEEEECCCCCceeEeecchHHHHHHHHHHHHhCCCcHHHHHHcCCccC
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchh--hhhhhcCCCCCCCCCCCCccccccccccccccccccCCC--------------------C-------CCchH
Q 010811 324 DGNASR--EYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYS--------------------G-------QGFDQ 374 (500)
Q Consensus 324 d~~~~~--~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~--------------------~-------~~~dQ 374 (500)
|+|+++ +|+++. . ..++||||++||+|||+|++ +..++.+|+ | +++||
T Consensus 81 d~~~~~~~~~~~~~-~-~~~~gdLGpvYG~Qwr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iDQ 157 (323)
T PRK13821 81 DQNANENAQWLANP-Y-RQGVDDLGDVYGVQWRQWPG-YKVLDASADAQIADATSRGFRIVARFDEDGAPKVLLYKAIDQ 157 (323)
T ss_pred CCcccccccccccc-c-cccCCcccccceeeeeeccc-ccccccccccccccccccccccccccCCCCccccccccChhH
Confidence 999875 677652 1 12368999999999999986 333333332 3 46899
Q ss_pred HHHHHHHHhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEE--ECCEEEEEEEeecccccccccccHHHHHHHHHHHH
Q 010811 375 LLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYM--ANGELSCQMYQRSADMGLGVPFNIASYALLTCMIA 452 (500)
Q Consensus 375 l~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v--~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA 452 (500)
|++||++||+||+|||+|+++|||.++++|+|||||.++||+| ++|+|+|++||||+|+++|+|||+++|++|++|||
T Consensus 158 i~~vI~~Lk~nP~sRR~I~~~Wnp~dl~~maLpPCh~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~miA 237 (323)
T PRK13821 158 LRQCLDTIMNNPGSRRILFHGWNPAVLDEIALPACHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVG 237 (323)
T ss_pred HHHHHHHHhcCCCccceEEEEeChhHhccccCCcceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998 49999999999999999999999999999999999
Q ss_pred hhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 453 HVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 453 ~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
++||+++|+|+|+++|+|||+||++++++||+|+|+++|+|+|+++
T Consensus 238 ~~~gl~~G~~ih~igdaHIY~nhi~~v~eqL~R~P~~~P~l~i~~~ 283 (323)
T PRK13821 238 RLTGYTPRWFTYFIGDAHIYENQLDMLQEQLTREPYESPRLVISDR 283 (323)
T ss_pred HHhCCEeeeEEEEEEEEEEeHhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 9999999999999999999999999999999999999999999864
No 5
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=100.00 E-value=3e-81 Score=620.28 Aligned_cols=235 Identities=56% Similarity=1.005 Sum_probs=227.9
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|+||+++|++||++|+.+.||||++|+++||+++||||+++||++||||++||++++||+|||+|++|+++|+++|++||
T Consensus 1 m~~Yl~l~~~Il~~G~~~~drTg~~t~~i~g~~~r~dl~~~fPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
T PRK01827 1 MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELLWFLRGDTNIAYLQENGVHIW 80 (264)
T ss_pred ChHHHHHHHHHHHhCCCCCCCCCCceEEeccceEEEECCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCCChh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccC
Q 010811 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (500)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (500)
|+|+ +++||+|++||+|||+|++. +++++|||++||++||+||+|||+|+++|||.++++
T Consensus 81 d~~~------------~~~g~lg~~YG~q~r~~~~~--------~g~~~DQl~~vI~~Lk~np~sRR~ii~~wnp~dl~~ 140 (264)
T PRK01827 81 DEWA------------DENGDLGPVYGKQWRSWPTP--------DGRHIDQISKVIEQLKTNPDSRRLIVSAWNPGELDK 140 (264)
T ss_pred hhcc------------ccCCccCCcchHHHhcCcCC--------CCchHHHHHHHHHHHhcCCCchhheeeeeCHhHhhc
Confidence 9996 46799999999999999752 367799999999999999999999999999999999
Q ss_pred CCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHH
Q 010811 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (500)
Q Consensus 404 ~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (500)
|+|||||..+||.|++|+|+|++||||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+|||++|++++++||
T Consensus 141 ~~l~PC~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~~G~~~h~~g~~HIY~~h~~~~~~ql 220 (264)
T PRK01827 141 MALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQL 220 (264)
T ss_pred ccCCceEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCeeEEEEEEEeeEEEEhhHhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEecCC
Q 010811 484 QKLPKPFPVSIIIDI 498 (500)
Q Consensus 484 ~r~p~~~P~l~~~~~ 498 (500)
+|+|+++|+|+|||+
T Consensus 221 ~r~p~~~P~l~i~~~ 235 (264)
T PRK01827 221 SREPRPLPKLVINPD 235 (264)
T ss_pred cCCCCCCCEEEECCC
Confidence 999999999999865
No 6
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6e-80 Score=601.46 Aligned_cols=234 Identities=54% Similarity=1.008 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~i 322 (500)
|+||++++++|+++|..+.||||++|+++||++|+||+++ +||++|||++.||++++||+||++|.+|+..|+++|++|
T Consensus 3 ~~~yl~l~~~ile~G~~~~drt~~~t~sv~g~q~~~Dl~~~~fpllttk~v~~ks~i~Ellwf~~g~tn~~~l~~~gv~i 82 (268)
T COG0207 3 MKQYLDLIEHILENGTSRSDRTGTGTLSVFGYQMRFDLSKSEFPLLTTKKVHLKSIIHELLWFLRGDTNIAYLKENGVKI 82 (268)
T ss_pred hhHHHHHHHHHHHcCcccccccccceEEEeccEEEEecccCCCceeEeeeeehhhhhHhhhhhhcCCchHHHHHhcCccc
Confidence 8999999999999997788999999999999999999999 699999999999999999999999999999999999999
Q ss_pred ccCcchhhhhhhcCCCCCCC-CCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccc
Q 010811 323 WDGNASREYLDSVGLTDREE-GDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDL 401 (500)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~-g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~ 401 (500)
||+|+ .++ ||+|++||+|||+|... +++++|||.+||++||+||+|||+|+++|||.++
T Consensus 83 Wdew~------------~e~~Gdlg~vYg~q~r~~~~~--------~g~~iDQi~~vIe~Lk~np~sRR~ivs~WnP~e~ 142 (268)
T COG0207 83 WDEWA------------DENYGDLGPVYGYQWRKWLRP--------DGEKIDQIDKVIEQLKENPDSRRAIVSAWNPGEL 142 (268)
T ss_pred ccccc------------ccccCcccceeeEeeeeccCc--------CCCccHHHHHHHHHHhcCCcccceEEEecCcccc
Confidence 99998 355 99999999999999753 4788999999999999999999999999999999
Q ss_pred cCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHH
Q 010811 402 KLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (500)
Q Consensus 402 ~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~ 481 (500)
.+|++||||.++||+|++|||+|++||||||+++|+|||+++|++|++|||++||+|+|+|+|+++|||||+||+|++++
T Consensus 143 ~~m~l~PC~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle~G~f~h~~~daHIY~nh~e~~~~ 222 (268)
T COG0207 143 DEMALPPCHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLEPGEFVHTIGDAHIYDNHFDQAKE 222 (268)
T ss_pred ccccCCCcEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEEhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEecC
Q 010811 482 QLQKLPKPFPVSIIID 497 (500)
Q Consensus 482 ~l~r~p~~~P~l~~~~ 497 (500)
||+|+|+++|+|+||+
T Consensus 223 ql~R~p~~~pkl~in~ 238 (268)
T COG0207 223 QLKREPRPLPKLVINP 238 (268)
T ss_pred HhccCCCCCCeEEecC
Confidence 9999999999999998
No 7
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=100.00 E-value=9.4e-72 Score=558.26 Aligned_cols=239 Identities=54% Similarity=0.946 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|++|++++++||++|+.+.+|||++|+++||++++||++++||++|+|+++|+++++|++||++||+|+++|+++|++||
T Consensus 1 ~~~Y~~l~~~Il~~G~~~~~rtg~~t~~~~~~~~~~d~~~~~p~lt~k~~~~~~~~~EllW~l~Gs~d~~~l~~~~~~iw 80 (269)
T PF00303_consen 1 EKQYLDLLKKILENGEFREDRTGVGTKELFGVQLRIDPRKRFPLLTTKKVNWKSAIAELLWYLSGSNDVDFLREYGPKIW 80 (269)
T ss_dssp HHHHHHHHHHHHHHTEEEESTTSSEEEEEEEEEEEEECGGS-SSSSSST-HHHHHHHHHHHHHTT-SBHHHHHTTT-HTT
T ss_pred ChHHHHHHHHHHHcCCCccCCCCCcEEEECcceEEEcCCCCCccccccccccchhHHHHHHHHHcCccHHHHHhhccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccC
Q 010811 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (500)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (500)
+.|+.++| ++|++|++||+|||+|++.+ +| +.++|||++||++||++|+|||+++++|||.++.+
T Consensus 81 d~~~~~~~---------~~g~~g~~YG~~~r~~~~~~-----~~-~~~~dQl~~vi~~Lk~~p~sRR~vi~~w~p~~~~~ 145 (269)
T PF00303_consen 81 DFWADKDY---------EEGDLGPAYGPRWRHWGAPY-----DY-GFGFDQLEWVIEKLKNNPDSRRAVISIWNPSDDDE 145 (269)
T ss_dssp HGGHSHHH---------HTTB-SSSHHHHHHHBTSTE-----TT-TSSBEHHHHHHHHHHHSTTSSTEEEEC--TTTGGG
T ss_pred cccccccc---------ccCcccCCCCceeeeccccc-----cC-CccHHHHHHHHHHHhcCCCchhheeeeCCHhHhcC
Confidence 99986544 36899999999999998653 34 68899999999999999999999999999999999
Q ss_pred CCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHH
Q 010811 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (500)
Q Consensus 404 ~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (500)
++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||++||+++|+|+|+++|+|||++|+++|++||
T Consensus 146 ~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~~~l 225 (269)
T PF00303_consen 146 MADPPCHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLKPGTYTHFIGSAHIYENHIDAAKEQL 225 (269)
T ss_dssp SSS--SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEEcccEeeHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEecC
Q 010811 484 QKLPKPFPVSIIID 497 (500)
Q Consensus 484 ~r~p~~~P~l~~~~ 497 (500)
+|+|+++|+|++++
T Consensus 226 ~~~~~~~p~l~~~~ 239 (269)
T PF00303_consen 226 KREPYPFPKLEINP 239 (269)
T ss_dssp TS---S--EEEESS
T ss_pred hcCCCCCCEEEeCC
Confidence 99999999999986
No 8
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=100.00 E-value=2.8e-66 Score=502.84 Aligned_cols=214 Identities=63% Similarity=1.086 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHCCccc-cCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCccccc
Q 010811 246 LYLRLVQDIISDGNLK-DDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWD 324 (500)
Q Consensus 246 ~Yl~l~~~Il~~G~~~-~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iWd 324 (500)
+|++++++||++|..+ .+|||++|+++||++++||++++||++|+||++|+++++|++||++|++|+++|++++++||+
T Consensus 1 ~y~~~~~~il~~g~~~~~~Rtg~~t~~~~g~~~~~~~~~~~p~~t~k~~~~~~~i~Ellw~l~G~~~~~~l~~~~~~iw~ 80 (215)
T cd00351 1 QYLDLWRKILEEGYRKTDDRTGTGTRSLFGAQLRFDLSEGFPLLTTKKVPWKSAIEELLWFLRGDTNAERLKEYGVSIWD 80 (215)
T ss_pred CHHHHHHHHHHhCCeecCCCCCCceEEEeeeEEEEECccCccccccCCCCchhhhhhhhhhhcCCccHHHHHHhCccccc
Confidence 5999999999999998 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccCC
Q 010811 325 GNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLM 404 (500)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~ 404 (500)
+|+. ++|++|++||+|||+|++. ++++|||++||++||++|+|||+++++|||.++.++
T Consensus 81 ~~~~------------~~g~~g~~YG~r~r~~~~~---------~~~~dQi~~vi~~Lk~~p~sRR~ii~~w~p~~~~~~ 139 (215)
T cd00351 81 EWAS------------KEGDLGYTYGFQWRHWGAP---------GQGVDQIEKVIEKLKNNPDSRRAIISAWNPADLDLM 139 (215)
T ss_pred cccc------------cCCCCCCChhhheeecCCC---------CCChHHHHHHHHHHhcCCCchheEEEecChhhcccc
Confidence 9973 4689999999999999752 467999999999999999999999999999999999
Q ss_pred CCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHH
Q 010811 405 ALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (500)
Q Consensus 405 ~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (500)
++||||..+||+|++|+|+|+++|||||+++|+|+|+++|++||+|||+++|+++|+|+|+++|+|||++|+++|+
T Consensus 140 ~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~~~~~~~ 215 (215)
T cd00351 140 ALPPCHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLEPGEFIHTIGDAHIYENHLEQVK 215 (215)
T ss_pred CCCCceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCEeEEEEEEEEEEEEehhhHhhhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999874
No 9
>PRK00956 thyA thymidylate synthase; Provisional
Probab=100.00 E-value=2.9e-46 Score=360.72 Aligned_cols=199 Identities=24% Similarity=0.328 Sum_probs=172.9
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEe-CCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcC
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~d-l~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~ 319 (500)
....+.|..++++|+++|...++..|..++++.+..+..+ ++.+ +++ .
T Consensus 8 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-------~i~------------------------~ 56 (208)
T PRK00956 8 KSVASAWERLVPKIMNEGEEITDERGSKTKEIMNTIIEITNPKLK-------SIP------------------------E 56 (208)
T ss_pred CCHHHHHHHHHHHHHhCCcEeeCCCCceEEEEeceEEEEcCCccC-------CCC------------------------C
Confidence 4568899999999999999998888988999999998884 3322 111 0
Q ss_pred cccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 010811 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (500)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (500)
..-|+.|+.++|.+.+ + ..+.+.+|++||.|||+|++ ..|||++||++||++|+|||+++++|||.
T Consensus 57 ~~~~~~~~~~~y~~~~-~-~g~~~~~~~~YG~r~r~~~~------------~~dQi~~vI~~L~~~p~sRR~i~~~w~p~ 122 (208)
T PRK00956 57 KYPLGEEALEEYTKQL-L-SGSAQGFVYTYGERLREYPG------------EVDQIDYIIEKLKENKNSRRATAVTWNPY 122 (208)
T ss_pred CCCcchHHHHHHHHhc-c-CCccCccCCCHHHHHhcCCC------------hhHHHHHHHHHHhcCCCchheEEEEeCch
Confidence 1235566666666543 2 12345599999999999963 25999999999999999999999999999
Q ss_pred cccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHH
Q 010811 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (500)
Q Consensus 400 ~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (500)
++.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|+++|
T Consensus 123 ~d~~~~~~PC~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~v 202 (208)
T PRK00956 123 IDTKVDEVPCLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVELGTYTHHSVSAHIYERDWDYL 202 (208)
T ss_pred hhhhcCCCCCeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 010811 480 EEQLQ 484 (500)
Q Consensus 480 ~~~l~ 484 (500)
+++|+
T Consensus 203 ~~~l~ 207 (208)
T PRK00956 203 EKIFK 207 (208)
T ss_pred HHHhc
Confidence 99985
No 10
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=100.00 E-value=2.9e-44 Score=344.28 Aligned_cols=192 Identities=22% Similarity=0.352 Sum_probs=160.9
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEe-CCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcC
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYN-LRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~d-l~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~ 319 (500)
...++.|..++++|+++|..++++.|..++++.|..++++ ++.+ |+. ...+| + .+.|
T Consensus 6 ~ti~~a~~~~l~~I~~~G~~~~~~~G~~~~E~~~~~~~i~~P~~~-~~~--~~~~~------------~---~~~l---- 63 (199)
T TIGR03283 6 RSIAQAWRELVTKIMVEGEVVEDERGSLTKEVRNLIIHIENPGPE-KIP--EGYPL------------D---EEKL---- 63 (199)
T ss_pred CCHHHHHHHHHHHHHhCCeEeeCCCCceEEEEeceEEEEcCCccc-CcC--ccCcc------------c---HHHH----
Confidence 3567899999999999999999888999999999999884 4433 111 11111 1 1112
Q ss_pred cccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 010811 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (500)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (500)
++|.+.+ + ..++..++.+||.|||.|. ++|||++||++||++|+|||+++++|||.
T Consensus 64 ---------~~Y~~~l-l-~~~~~~~~y~YG~r~r~~~-------------g~dQl~~vI~~Lk~~p~sRR~i~~~w~p~ 119 (199)
T TIGR03283 64 ---------EEYEKQL-L-DPERQGFVYTYGNRLRRYF-------------GIDQIDYIIERLNQSPNSRRAIAITWDPP 119 (199)
T ss_pred ---------HHHHHHH-c-CCCcCCCCcCHHHHHHcCC-------------ChhHHHHHHHHHhcCCCccceeEEEECcc
Confidence 2222222 1 1223347899999999984 58999999999999999999999999999
Q ss_pred cccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHH
Q 010811 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478 (500)
Q Consensus 400 ~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~ 478 (500)
++.+++++|||..+||.|++|+|+|+++|||||+++|+|+|+++|++||++||+++|+++|+|+|+++|+|||++|++.
T Consensus 120 ~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIYe~d~~~ 198 (199)
T TIGR03283 120 QDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVEPGTLTTHAISAHIYERDFDE 198 (199)
T ss_pred hhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCcceEEEEEEEEEEEecccccc
Confidence 8888999999999999999999999999999999999999999999999999999999999999999999999999984
No 11
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism]
Probab=100.00 E-value=2.7e-43 Score=323.36 Aligned_cols=180 Identities=56% Similarity=0.944 Sum_probs=157.6
Q ss_pred cceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010811 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (500)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~ 100 (500)
|+.+.++||++.+++||++|+|||++|.||+||+++|+.+++|+|.|+||||||||||+|.+++||++|.||||||+...
T Consensus 1 ~~~~~~Vva~~~~mGIGk~g~LPW~lpsemkyF~~vT~~tsd~~k~NaViMGRKtweSiP~k~RPL~gRiNiVLSR~~~~ 80 (190)
T KOG1324|consen 1 MRLLNLVVALSPNMGIGKNGDLPWPLPSEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIPEKFRPLPGRINVVLSRSLKE 80 (190)
T ss_pred CceeEEEEEEccccCcccCCCCCCCCHHHHHHHHHHhhccCCcccceeEEecccccccCCcccCCCCCceEEEEecccCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEe
Q 010811 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPW 180 (500)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~ 180 (500)
+....++++++.|++.|++.|.+.++..+.+.||||||+.+|+++|++++||++++|+|...++||+|||.+|.+.++.+
T Consensus 81 ~~~~t~~~~~~~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~~al~~p~~~~i~~T~I~~~~~cDtffP~id~s~y~~~ 160 (190)
T KOG1324|consen 81 DFAPTENVFLSSSLESALDLLEEPPSSNSVEMVFVIGGSEVYSEALNSPRCDAIHITEIFQSFECDTFFPAIDTSSYEKW 160 (190)
T ss_pred CcCCccCEEEeccHHHHHHhhcCCccccceeEEEEEcCHHHHHHHHcCcCcceEEEEEecccCCcccccccCChHHhchh
Confidence 44455679999999999999999888888999999999999999999999999999999999999999999998655554
Q ss_pred eeecCceecCccEEEEEEEE
Q 010811 181 YSSFPIVENNIRYCLSTYVR 200 (500)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (500)
.......+++.++.+..+.|
T Consensus 161 ~~~~pv~~~~~~~~~e~~lk 180 (190)
T KOG1324|consen 161 DKLFPVSENGLRVQEETFLK 180 (190)
T ss_pred hhcCcccccccchhhhcCcc
Confidence 33322334444444444443
No 12
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=100.00 E-value=1.4e-41 Score=316.09 Aligned_cols=159 Identities=48% Similarity=0.804 Sum_probs=143.7
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|.+|+|++.||+||.+|+|||++|+||+||+++|+ +++||||||||||+| .+|||+|.||||||+...
T Consensus 1 mi~lI~A~~~n~~IG~~~~lPW~~p~Dl~~Fk~~T~-------~~~vIMGrkT~eslp--~~pLp~R~niVlSr~~~~-- 69 (161)
T PF00186_consen 1 MISLIVAVDKNGGIGKDGKLPWHLPEDLKFFKKLTT-------GNPVIMGRKTFESLP--FRPLPGRINIVLSRNPDY-- 69 (161)
T ss_dssp -EEEEEEEETTSEEEBTTBSSSSSHHHHHHHHHHHT-------TCEEEEEHHHHHHST--GSSBTTSEEEEESSSTTS--
T ss_pred CEEEEEEECCCCcccCCCccccccHHHHHHHHHccC-------CccEEEeeCchhcCC--ccCCCCCeEEEEEcCccc--
Confidence 589999999999999999999999999999999998 899999999999998 369999999999999864
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|+++|++.++.. .++||||||++||+++| ++||++|+|+|+..++||+|||.++.+.|++++.
T Consensus 70 -~~~~~~~~~s~~~al~~~~~~-----~~~i~ViGG~~iy~~~l--~~~d~l~lT~I~~~~~~D~~fP~~d~~~~~~~~~ 141 (161)
T PF00186_consen 70 -EPEGVEVVSSLEEALELAKDK-----DEEIFVIGGAEIYEQFL--PYADRLYLTRIDGDFEGDTFFPEIDESEFKLVSE 141 (161)
T ss_dssp -CTTTSEEESSHHHHHHHHTTS-----ESEEEEEE-HHHHHHHH--HGESEEEEEEESSESTTSEECSSCCTTTEEEEEE
T ss_pred -ccCCceeeCCHHHHHHHhhcc-----CCcEEEECCHHHHHHHH--HhCCeEEEEEEcCccccceECCCCChHHCEEEEE
Confidence 335788999999999966543 57999999999999999 6999999999999999999999999889999987
Q ss_pred ecCc--eecCccEEEEEEEE
Q 010811 183 SFPI--VENNIRYCLSTYVR 200 (500)
Q Consensus 183 ~~~~--~e~~~~~~f~~Y~r 200 (500)
+... +++++.|+|++|+|
T Consensus 142 ~~~~~~~~~~~~~~f~~y~R 161 (161)
T PF00186_consen 142 EEHPKDEENGIKYTFVTYER 161 (161)
T ss_dssp EEEEHBEETTSEEEEEEEEE
T ss_pred EecccCCCCCCCEEEEEEEC
Confidence 6544 67899999999997
No 13
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=100.00 E-value=1.2e-39 Score=302.37 Aligned_cols=156 Identities=35% Similarity=0.662 Sum_probs=139.2
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010811 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (500)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~ 103 (500)
|.+|+|++.||+||.+|+|||++|+||+||+++|+ +++|||||||||++| +|||+|+|||+||+..
T Consensus 2 i~~I~A~~~~~~IG~~~~lPW~~~~D~~~Fk~~T~-------~~~vIMGRkTyes~~---~plp~r~~iVlSr~~~---- 67 (159)
T PRK10769 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIVISSQPG---- 67 (159)
T ss_pred EEEEEEECCCCcEecCCCcCcCCHHHHHHHHHHhC-------CCeEEEeHHHHHhhh---hhcCCCcEEEECCCCC----
Confidence 78999999999999999999999999999999998 899999999999997 6999999999999763
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeeee
Q 010811 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (500)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~ 183 (500)
..+++.++++++++++.+++ .++||||||+++|+++| ++||+++||+||..++||+|||.++.+.|++++++
T Consensus 68 ~~~~v~~~~~l~~~l~~~~~------~~~I~viGG~~iy~~~l--~~~Del~lT~i~~~~~gD~~fP~~~~~~~~~~~~~ 139 (159)
T PRK10769 68 TDDRVTWVKSVDEALAAAGD------VPEIMVIGGGRVYEQFL--PKAQRLYLTHIDAEVEGDTHFPDYEPDEWESVFSE 139 (159)
T ss_pred CCCCEEEECCHHHHHHHhcC------CCCEEEECcHHHHHHHH--HHCCEEEEEEECccccCCEECCCCChHHCEEEEEE
Confidence 24578888899999996653 36899999999999999 66999999999999999999999988889998655
Q ss_pred cCc--eecCccEEEEEEEEc
Q 010811 184 FPI--VENNIRYCLSTYVRV 201 (500)
Q Consensus 184 ~~~--~e~~~~~~f~~Y~r~ 201 (500)
... +++++.|.|.+|+|+
T Consensus 140 ~~~~~~~~~~~~~f~~y~r~ 159 (159)
T PRK10769 140 FHDADEQNSHSYCFEILERR 159 (159)
T ss_pred eccccCCCCccEEEEEEEeC
Confidence 433 567788999999983
No 14
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-36 Score=284.29 Aligned_cols=164 Identities=40% Similarity=0.590 Sum_probs=144.2
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|++|+|+|+||+||.+|+|||++|+|+++|+++|. ++.|||||||||+++...+||++|.|||+||+...
T Consensus 1 ~i~~i~A~s~dG~Ig~~~~lpW~~~~~~~~Fk~~t~-------~~~viMGRkT~esl~~~~~pl~~r~~iV~sr~~~~-- 71 (167)
T COG0262 1 MIILIVAVSLDGVIGRDNSLPWHLPEDLAHFKATTL-------GKPVIMGRKTYESLPGEWRPLPGRKNIVLSRNPDL-- 71 (167)
T ss_pred CEEEEEEEcCCCeeecCCCCCCCChhHHHHHHHhhC-------CCCEEEccchhhhccccCCCCCCCeEEEEecCccc--
Confidence 489999999999999999999999999999999998 67799999999999966569999999999999543
Q ss_pred CCCCC-EEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCcccCCCCCCCCcEEe
Q 010811 103 ATVEN-VVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDSSVFQPW 180 (500)
Q Consensus 103 ~~~~~-~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~Gd~fFP~~~~~~~~l~ 180 (500)
..++ +.+++|+++|+..++.. .+++|||+||+++|+++|+++++|+++||+||+.+ +||+|||..+...|+++
T Consensus 72 -~~e~~~~v~~s~~~al~~~~~~----~~~~i~IiGG~~l~~~~l~~~l~Del~lt~ip~~lg~Gd~~Fp~~~~~~~~~~ 146 (167)
T COG0262 72 -KTEGGVEVVDSIEEALLLLLKE----EGEDIFIIGGGELYRQFLPAGLADELILTIIPVLLGEGDTLFPEGDPADWELV 146 (167)
T ss_pred -ccCCCEEEeCCHHHHHHHHhhc----CCCeEEEEcCHHHHHHHhccccccEEEEEEeeeeccCCCccCCCCCccceEEe
Confidence 3456 89999999999999875 26899999999999999988899999999999999 99999999776789998
Q ss_pred eeecCceecCccEEEEEEEE
Q 010811 181 YSSFPIVENNIRYCLSTYVR 200 (500)
Q Consensus 181 ~~~~~~~e~~~~~~f~~Y~r 200 (500)
..+...+.+.+.+.|..|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~ 166 (167)
T COG0262 147 SSEDADEKGGYFYTFESYER 166 (167)
T ss_pred eeeecccCCceeEEEEEeec
Confidence 77533345666777777765
No 15
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.97 E-value=3.2e-31 Score=245.94 Aligned_cols=158 Identities=45% Similarity=0.720 Sum_probs=135.5
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010811 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (500)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~ 103 (500)
|++++|+|+||+||.++++||++++|+++|++.+. ++++||||+|||+++. +|+|+|.+||+||++.. .
T Consensus 1 i~~~~a~sldG~i~~~~~~~W~~~~d~~~f~~~~~-------~~~ivmGR~Tye~~~~--~~~~~~~~~V~S~~~~~--~ 69 (158)
T cd00209 1 ISLIVAVDENGVIGKDNKLPWHLPEDLKHFKKTTT-------GNPVIMGRKTFESIPR--RPLPGRTNIVLSRQLDY--Q 69 (158)
T ss_pred CEEEEEECCCCceeCCCCcCcCCHHHHHHHHHHHC-------CCeEEEChhhHhhCCC--cCCCCCCEEEEccCCCc--C
Confidence 57899999999999977799999999999998886 7999999999999974 68999999999999854 2
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeeee
Q 010811 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (500)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~ 183 (500)
.++++.++.+++++++.++ . .+++|||+||+++|++++++ +||++++++|+.++|+++||......|++++++
T Consensus 70 ~~~~~~~~~~~~~~v~~lk-~----~~~~I~v~GG~~l~~~~l~~--iDe~~l~v~pv~~~G~~~f~~~~~~~l~l~~~~ 142 (158)
T cd00209 70 DAEGVEVVHSLEEALELAE-N----TVEEIFVIGGAEIYKQALPY--ADRLYLTRIHAEFEGDTFFPEIDESEWELVSEE 142 (158)
T ss_pred CCCCeEEECCHHHHHHHHh-c----CCCeEEEECcHHHHHHHHhh--CCEEEEEEECCcccCCEECCCCCchhcEEEEEE
Confidence 3567888889999999998 4 36799999999999999966 999999999999999999998755679998733
Q ss_pred cCceecCccEEEEEEE
Q 010811 184 FPIVENNIRYCLSTYV 199 (500)
Q Consensus 184 ~~~~e~~~~~~f~~Y~ 199 (500)
....+++.+|.|.+|.
T Consensus 143 ~~~~~~~~~~~~~~~~ 158 (158)
T cd00209 143 EVFEEDGYSYTFETYE 158 (158)
T ss_pred eecccCCccEEEEEEC
Confidence 3334455688888873
No 16
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=99.97 E-value=3.5e-31 Score=284.69 Aligned_cols=156 Identities=17% Similarity=0.429 Sum_probs=132.8
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|++|||++.+|+||.+|.||||+|+||+||+++|+ +++||||||||||++ .|||+|+|||+||+.....
T Consensus 1 mi~lI~A~~~n~~IG~~~~LPW~~peDl~~Fk~~T~-------~~tVVMGRkTyEsi~---~~Lp~R~niVlSr~~~~~~ 70 (505)
T PRK00478 1 MIKLIWCEDLNFGIAKNNQIPWKIDEELNHFHQTTT-------NHTIVMGYNTFQAMN---KILANQANIVISKKHQREL 70 (505)
T ss_pred CEEEEEEECCCCcccCCCCCCCCCHHHHHHHHHHhC-------CCeEEEehHHHHhhh---hcCCCCeEEEECCCCcccc
Confidence 388999999999999999999999999999999998 899999999999998 4899999999999874311
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
...+++.+++|++++++... +++||||||++||++|+ ++||+++||+||+.++||+||+ ++...|++++.
T Consensus 71 ~~~~~v~v~~sl~~~L~~~~-------~~dI~IIGG~~Ly~~~l--~~vDel~lT~Ip~~~g~d~~f~-~~~~~~~Lv~~ 140 (505)
T PRK00478 71 KNNNELFVFNDLKKLLIDFS-------NVDLFIIGGKKTIEQFI--KYADQLIISKLNADYKCDLFVN-LNYDDFSLVQT 140 (505)
T ss_pred CCCCCeEEECCHHHHHHhCC-------CCCEEEEChHHHHHHHH--HhCCEEEEEEeccccCCCCCCC-CChhhheeeee
Confidence 12357888999999976431 35899999999999999 6799999999999999999984 55568988765
Q ss_pred ecCceecCccEEEEEEEEccc
Q 010811 183 SFPIVENNIRYCLSTYVRVRS 203 (500)
Q Consensus 183 ~~~~~e~~~~~~f~~Y~r~~~ 203 (500)
.. ..+|++++|.|+.+
T Consensus 141 ~~-----~~~~v~~~Y~rk~~ 156 (505)
T PRK00478 141 KE-----YDQFVVEYWEKKPN 156 (505)
T ss_pred EE-----cCcEEEEEEEecCC
Confidence 42 22599999999744
No 17
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=99.62 E-value=4.9e-15 Score=141.96 Aligned_cols=152 Identities=20% Similarity=0.205 Sum_probs=111.9
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhcccCCCCCCcEEEEccccccccCC----CCCCC---------
Q 010811 22 RSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL----EHRPL--------- 86 (500)
Q Consensus 22 rki~livAvs~dG~IG~-~g~lpW~~-~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~----~~~pl--------- 86 (500)
|+|++.+|+|.||+|+. +++..|.. +++.+++.++... .+++||||+|++.... ...+.
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~------~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~ 74 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSE------ADAILVGRNTVRADNPSLTVRWPGDPPPRERGRA 74 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHH------CSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCH
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhh------CCEEEeccchhhhcCccccccCccccchhhhhhc
Confidence 57999999999999975 88899974 4566777666643 6899999999987522 01111
Q ss_pred CCCcEEEEcCCCCCCC----CC-CCC-EEEECC---------------HHHHHHHHHcCCCCCCCCcEEEEecHHHHHHH
Q 010811 87 PGRLNVVLTRSGSFDI----AT-VEN-VVICGS---------------IGSALELLAASPYCLSIEKVFVIGGGQILSEA 145 (500)
Q Consensus 87 ~~R~nIVlSrt~~~~~----~~-~~~-~~v~~s---------------l~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~ 145 (500)
+..+.||+|++..... .. ... .++++. +.++++.|++. +.++|+|.||+++..+|
T Consensus 75 ~~p~~vV~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~v~~dl~~~l~~L~~~----g~~~i~v~GG~~l~~~~ 150 (200)
T PF01872_consen 75 KQPPKVVVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLRVRVDLEEALRRLKER----GGKDILVEGGGSLNGSF 150 (200)
T ss_dssp SSSEEEEEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHHESEHHHHHHHHHHHT----TTSEEEEEEHHHHHHHH
T ss_pred cCCeEEEEecccccccccccccCCCceEEEeecccccccccceEEecCHHHHHHHHHhc----CCCEEEEechHHHHHHH
Confidence 4557999999885211 01 112 233333 99999999987 58999999999999999
Q ss_pred hcCCCcCEEEEEEECccc-c-CcccCCCCCCC--CcEEeeee
Q 010811 146 LNAPECDAIHITEIETRI-E-CDTFIPSIDSS--VFQPWYSS 183 (500)
Q Consensus 146 L~~~lvDei~lT~I~~~~-~-Gd~fFP~~~~~--~~~l~~~~ 183 (500)
+++++|||++|++.|..+ . |.++|+..... .|++++..
T Consensus 151 l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~~~l~l~~~~ 192 (200)
T PF01872_consen 151 LRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRSLRLELVSVR 192 (200)
T ss_dssp HHTT--SEEEEEEESEE-SSTSEESSTSSTSSSEEEEEEEEE
T ss_pred HhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcccceEEEEEE
Confidence 999999999999999888 5 78999987653 47776553
No 18
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=99.40 E-value=1.6e-11 Score=119.50 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=107.8
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCC-----------------
Q 010811 22 RSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE----------------- 82 (500)
Q Consensus 22 rki~livAvs~dG~IG~-~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~----------------- 82 (500)
+.+++.+|+|+||.|+. +|.- |. -+++..++.++-.. .++||||++|++.--..
T Consensus 3 P~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~------~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~v 75 (217)
T PRK05625 3 PYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAE------VDAVMVGIGTVLADDPSLTVHRYAAGKPENPIRV 75 (217)
T ss_pred CEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHH------CCEEEEccceEEccCCcceeeeccCCCCCCCEEE
Confidence 56889999999999975 6666 87 45666666665532 68999999999862100
Q ss_pred -----------CCCCC-CCcEEEEcCCCCCCCC----CCCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEecHH
Q 010811 83 -----------HRPLP-GRLNVVLTRSGSFDIA----TVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGGGQ 140 (500)
Q Consensus 83 -----------~~pl~-~R~nIVlSrt~~~~~~----~~~~~~v~------~sl~eai~~l~~~~~~~~~~~I~ViGGa~ 140 (500)
.+.+. ..+.+|+|+....... ...++.+. -++.++++.|++. +.++|||.||++
T Consensus 76 Vld~~~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~ 151 (217)
T PRK05625 76 VVDSSARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGGERVDLPDLLEDLYER----GIKRLMVEGGGT 151 (217)
T ss_pred EECCCCCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEecCHH
Confidence 00111 1234444433210000 01122222 3788999999876 578999999999
Q ss_pred HHHHHhcCCCcCEEEEEEECcccc---CcccCCCCC------CCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 141 ILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 141 Iy~~~L~~~lvDei~lT~I~~~~~---Gd~fFP~~~------~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
+..+|++++++||+++++.|..+. |.++|+... ...|++.+... .+++ . ++.|.++
T Consensus 152 l~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~--~~~~--~-~l~y~~~ 216 (217)
T PRK05625 152 LIWSMFKEGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCR--CDEG--V-VLTYKVK 216 (217)
T ss_pred HHHHHHHCCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEE--ECCE--E-EEEEEEc
Confidence 999999999999999999998874 778887531 12566654432 2343 2 4777664
No 19
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=99.38 E-value=1.2e-11 Score=120.05 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=96.5
Q ss_pred ceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccc----cCCCCCC----------
Q 010811 22 RSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP---------- 85 (500)
Q Consensus 22 rki~livAvs~dG~IG~-~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~~~p---------- 85 (500)
+.+.+.+|+|+||.|+. +|...|. -+++..++.++-.. .++|||||+||+. +.. .+|
T Consensus 3 P~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~------~DailvG~~T~~~d~p~l~~-r~~~~~~~~~P~~ 75 (216)
T TIGR00227 3 PYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQ------SDAILVGSGTVLADDPRLTV-RWVELDELRNPVR 75 (216)
T ss_pred CEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhH------cCEEEECcCeEeccCCccee-eccCcccCCCCeE
Confidence 56899999999999986 7878896 45666666655542 7899999999996 211 011
Q ss_pred ---------------CC-CCcEEEEcCCCCCCCC----CCCCEEE----EC--CHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010811 86 ---------------LP-GRLNVVLTRSGSFDIA----TVENVVI----CG--SIGSALELLAASPYCLSIEKVFVIGGG 139 (500)
Q Consensus 86 ---------------l~-~R~nIVlSrt~~~~~~----~~~~~~v----~~--sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (500)
+. ..+.+|+|++...... ...++.+ .. ++.++++.|++. +.++|+|.||+
T Consensus 76 vv~~~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~~~dl~~~l~~L~~~----g~~~llveGG~ 151 (216)
T TIGR00227 76 VVLDSQLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETKRVDLKKLMEILYEE----GINSVMVEGGG 151 (216)
T ss_pred EEECCCCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCCCcCHHHHHHHHHHc----CCCEEEEeeCH
Confidence 11 1234555543311000 0111222 23 799999999876 57899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc---CcccCC
Q 010811 140 QILSEALNAPECDAIHITEIETRIE---CDTFIP 170 (500)
Q Consensus 140 ~Iy~~~L~~~lvDei~lT~I~~~~~---Gd~fFP 170 (500)
++..+|++++++||+++++.|..+. |.++|.
T Consensus 152 ~L~~~fl~~~LvDel~l~i~P~ilG~~~g~~~~~ 185 (216)
T TIGR00227 152 TLNGSLLKEGLVDELIVYIAPKLLGGRDAPTLVD 185 (216)
T ss_pred HHHHHHHHCCCCCEEEEEECchhhCCCCCcCccC
Confidence 9999999999999999999998874 555654
No 20
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=99.24 E-value=9.5e-11 Score=121.98 Aligned_cols=134 Identities=18% Similarity=0.150 Sum_probs=92.6
Q ss_pred cceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhcccCCCCCCcEEEEccccccccCC---CCCCC-C-------
Q 010811 21 KRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPL---EHRPL-P------- 87 (500)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~~-~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~---~~~pl-~------- 87 (500)
-+-+++.+|+|+||+|+. +|...|.- +++..++.++... .+++||||+||+.... ..||- +
T Consensus 140 rP~v~~~~a~SLDG~Ia~~~g~~~wi~~~~~~~~~~~lra~------~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV 213 (344)
T TIGR00326 140 LPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ------SDAILVGGGTVKADNPALTARLDEATEQPLRVV 213 (344)
T ss_pred CCEEEEEEeeCCCCCccccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhHhHhCCcccccCCCCCCCCeEEE
Confidence 356999999999999976 88888974 4455555555332 7899999999994210 01111 0
Q ss_pred ----------------CCcEEEEcCCCCC-CCCCCCCEEEE----CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHh
Q 010811 88 ----------------GRLNVVLTRSGSF-DIATVENVVIC----GSIGSALELLAASPYCLSIEKVFVIGGGQILSEAL 146 (500)
Q Consensus 88 ----------------~R~nIVlSrt~~~-~~~~~~~~~v~----~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L 146 (500)
..+.+|+|++... ......++.+. .|+.++++.|++. +.++|+|.||+.+..+|+
T Consensus 214 ~d~~~~~~~~~~~~~~~~~~~V~s~~~~~~~~~~~~~v~v~~~~~~dl~~~l~~L~~~----g~~~ilveGG~~L~~~ll 289 (344)
T TIGR00326 214 LDTQLRIPEFAKLIPQIAPTWIFTTARDKKKRLEAFEVNIFPLEKVTIREVMTQLGKR----GINSVLVEGGPNLLGSFL 289 (344)
T ss_pred EcCCCCCCCcchhhcCCCCEEEEECChhhhhHHhhCCeEEecCCCCCHHHHHHHHHhC----CCCEEEEeeHHHHHHHHH
Confidence 2234555543211 00001122222 2889999999875 588999999999999999
Q ss_pred cCCCcCEEEEEEECcccc
Q 010811 147 NAPECDAIHITEIETRIE 164 (500)
Q Consensus 147 ~~~lvDei~lT~I~~~~~ 164 (500)
++++|||+++++.|..+.
T Consensus 290 ~~gLVDEl~l~i~P~ilG 307 (344)
T TIGR00326 290 DEGLVDELIIYIAPKLLG 307 (344)
T ss_pred HCCCCeEEEEEEccEEec
Confidence 999999999999998774
No 21
>PRK14059 hypothetical protein; Provisional
Probab=98.98 E-value=4.5e-08 Score=97.81 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=112.6
Q ss_pred cceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCC---C----------CC
Q 010811 21 KRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH---R----------PL 86 (500)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~---~----------pl 86 (500)
.+-+.+.+|+|+||.|+.+|.=-|. -+++.+++.++-.. .++|+.|.+|-..=-... . -.
T Consensus 30 rP~V~lk~A~SlDGkia~~g~s~~It~~~~r~~~h~lRa~------~DAIlVG~~Tv~~DnP~L~r~~~~~~~~R~~~g~ 103 (251)
T PRK14059 30 RPWLRANFVTSLDGAATVDGRSGGLGGPADRRVFGLLRAL------ADVVVVGAGTVRAENYGGVRLSAAARQQRQARGQ 103 (251)
T ss_pred CCeEEEEEEEcCcccccCCCCCcCcCCHHHHHHHHHHHHH------CCEEEEchhhhhhcCccccccCHHHHHHHHhcCC
Confidence 4789999999999999977776686 46777777666643 789999999985321000 0 00
Q ss_pred -CCCcEEEEcCCCCCCCC------C-----------------------CCCEE-EE-----CCHHHHHHHHHcCCCCCCC
Q 010811 87 -PGRLNVVLTRSGSFDIA------T-----------------------VENVV-IC-----GSIGSALELLAASPYCLSI 130 (500)
Q Consensus 87 -~~R~nIVlSrt~~~~~~------~-----------------------~~~~~-v~-----~sl~eai~~l~~~~~~~~~ 130 (500)
+.-+.||++++...+.. . ..++. +. -++.++++.|++. +.
T Consensus 104 ~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~ 179 (251)
T PRK14059 104 AEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR----GL 179 (251)
T ss_pred CCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCCCCCCHHHHHHHHHhC----CC
Confidence 11234666654332000 0 00111 11 2788899999875 58
Q ss_pred CcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cC-cccCCCC-C-CCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 131 EKVFVIGGGQILSEALNAPECDAIHITEIETRI-EC-DTFIPSI-D-SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 131 ~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~G-d~fFP~~-~-~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
++|||.||+.+..+|++++++||+++++.|..+ .| -++|+.. . ...|++.+... ..+ +..+++|.+.
T Consensus 180 ~~vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~~~~~~l~L~~~~~--~~~--g~v~l~Y~~~ 250 (251)
T PRK14059 180 RRILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPGQAPTRMRLAHVLT--DDD--GYLFLRYVRA 250 (251)
T ss_pred CEEEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCCCCCcCeEEEEEEE--cCC--CEEEEEEEeC
Confidence 899999999999999999999999999999888 44 5777653 1 24677765432 223 4688999874
No 22
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=98.80 E-value=3.8e-07 Score=88.68 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=92.9
Q ss_pred eEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccc----cCCCCCC-CCCCcEEEEc
Q 010811 23 SYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWES----IPLEHRP-LPGRLNVVLT 95 (500)
Q Consensus 23 ki~livAvs~dG~IG~-~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyes----lp~~~~p-l~~R~nIVlS 95 (500)
-+.+-+|+|+||.|+. +|+ -|. -+++.+++.++-.. .++|+.|..|-.. +...... -.....||++
T Consensus 2 ~V~lk~A~SlDGkia~~~g~-~~it~~~~r~~~h~lRa~------~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld 74 (210)
T TIGR01508 2 YVIVNVAMSLDGKLATINRD-SRISCEEDLIRVHEIRAE------VDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVD 74 (210)
T ss_pred EEEEEEeecCcccccCCCCC-cCcCCHHHHHHHHHHHHH------CCEEEECcCeEEecCCcccccCcccCCCCEEEEEC
Confidence 3788999999999986 666 562 36777777776653 7899999999863 2111000 0112346666
Q ss_pred CCCCCCCC----------------C----------CCCE--EEEC----CHHHHHHHHHcCCCCCCCCcEEEEecHHHHH
Q 010811 96 RSGSFDIA----------------T----------VENV--VICG----SIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (500)
Q Consensus 96 rt~~~~~~----------------~----------~~~~--~v~~----sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~ 143 (500)
++...+.. . ..++ +.+. ++.++++.|++. +.++|+|-||+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~~l~~ 150 (210)
T TIGR01508 75 SKLRVPLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGEGRVDLKKLLDILYDK----GVRRLMVEGGGTLIW 150 (210)
T ss_pred CCCCCCCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCcCHHHHHHHHHHC----CCCEEEEeeCHHHHH
Confidence 65432000 0 0011 1111 677888888765 588999999999999
Q ss_pred HHhcCCCcCEEEEEEECcccc---CcccCC
Q 010811 144 EALNAPECDAIHITEIETRIE---CDTFIP 170 (500)
Q Consensus 144 ~~L~~~lvDei~lT~I~~~~~---Gd~fFP 170 (500)
+|++++++||+++++.|..+. +..+|.
T Consensus 151 ~fl~~~LvDel~l~i~P~ilG~~~~~~~~~ 180 (210)
T TIGR01508 151 SLFKENLVDEISVYIAPKIFGGRDAPTYVD 180 (210)
T ss_pred HHHHCCCCcEEEEEEcCEEEcCCCCcCccC
Confidence 999999999999999998874 345554
No 23
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.45 E-value=1.3e-05 Score=84.03 Aligned_cols=135 Identities=14% Similarity=0.118 Sum_probs=89.8
Q ss_pred cceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCC--CC-----CCCCCcEE
Q 010811 21 KRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--HR-----PLPGRLNV 92 (500)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~--~~-----pl~~R~nI 92 (500)
.+-+.+-+|+|+||.|+. +|.-...-+++.++..++-.. .++|++|..|-..=... -+ +-++-..|
T Consensus 139 rP~V~lK~A~SLDGkIA~~~G~s~IT~~~ar~~vh~lRa~------~DAILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RV 212 (360)
T PRK14719 139 LPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKD------VDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRI 212 (360)
T ss_pred CCeEEEEEEEcCcCcccCCCCCCCcCCHHHHHHHHHHHHH------CCEEEECcchHhhcCCCCccccccccCCCCCEEE
Confidence 567999999999999986 444333346677777666653 78999999998421000 01 00112245
Q ss_pred EEcCCCCCCCC-----------------------------CCCCEEE-E-----CCHHHHHHHHHcCCCCCCCCcEEEEe
Q 010811 93 VLTRSGSFDIA-----------------------------TVENVVI-C-----GSIGSALELLAASPYCLSIEKVFVIG 137 (500)
Q Consensus 93 VlSrt~~~~~~-----------------------------~~~~~~v-~-----~sl~eai~~l~~~~~~~~~~~I~ViG 137 (500)
|++++...+.. ...++.+ . -++.++++.|.+. +...|||-|
T Consensus 213 VlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~~~~~~~~dl~~~l~~L~~~----gi~svlVEG 288 (360)
T PRK14719 213 VVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVLQAGVQKVDLRKIMNEIYKM----GINKILLEG 288 (360)
T ss_pred EEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEEEcCCCCCCHHHHHHHHHhC----CCCEEEEEe
Confidence 55554321000 0001111 1 1677888888765 588999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECccccC
Q 010811 138 GGQILSEALNAPECDAIHITEIETRIEC 165 (500)
Q Consensus 138 Ga~Iy~~~L~~~lvDei~lT~I~~~~~G 165 (500)
|+++..+|++++++||+++++.|..+.|
T Consensus 289 G~~l~~sfl~~~LvDel~l~iaP~ilGg 316 (360)
T PRK14719 289 GGTLNWGMFKENLINEVRVYIAPKVFGG 316 (360)
T ss_pred CHHHHHHHHHCCCceEEEEEEccEEECC
Confidence 9999999999999999999999988754
No 24
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=98.38 E-value=2.3e-05 Score=76.77 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=96.2
Q ss_pred cceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEcccccccc-CC---CCCCC---CCCcE
Q 010811 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI-PL---EHRPL---PGRLN 91 (500)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyesl-p~---~~~pl---~~R~n 91 (500)
.+.+.+-+|+|+||.|+. +|+--|. -+++.+..-++-.. .++|+.|..|-..= |. +.-.. .+...
T Consensus 3 rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~------~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~r 76 (218)
T COG1985 3 RPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAE------SDAILVGSGTVLADNPSLTVRLPEGGEERNPVR 76 (218)
T ss_pred CCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHH------cCEEEECccEEEeeCCccccccCCCCccCCCEE
Confidence 347899999999999987 6665687 56666555555442 67999999998642 10 00011 23345
Q ss_pred EEEcCCCCCCC----CC-C---CCE--------------------EEEC----CHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010811 92 VVLTRSGSFDI----AT-V---ENV--------------------VICG----SIGSALELLAASPYCLSIEKVFVIGGG 139 (500)
Q Consensus 92 IVlSrt~~~~~----~~-~---~~~--------------------~v~~----sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (500)
||++++...+. .. . +.. ++++ |+..+++.|.+. +...|+|=||+
T Consensus 77 VIlD~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~----~i~~vlvEGG~ 152 (218)
T COG1985 77 VILDSRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAER----GINSVLVEGGA 152 (218)
T ss_pred EEECCCCcCCchhhhhccCCCCcEEEEecCchhhhhHHHhCCCEEEEcCCCccCHHHHHHHHHhC----CCcEEEEccCH
Confidence 66666543200 00 0 111 1222 578888888876 47899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECcccc--CcccCCCC
Q 010811 140 QILSEALNAPECDAIHITEIETRIE--CDTFIPSI 172 (500)
Q Consensus 140 ~Iy~~~L~~~lvDei~lT~I~~~~~--Gd~fFP~~ 172 (500)
.+..+|+++++|||+.+++-|..+. +-+++...
T Consensus 153 ~L~~s~l~~glVDel~l~iaP~i~G~~~~~~~~~~ 187 (218)
T COG1985 153 TLNGSFLEAGLVDELLLYIAPKILGGSARTLVGGL 187 (218)
T ss_pred HHHHHHHHcCCCcEEEEEEechhhcCCCCccccCc
Confidence 9999999999999999999998884 35666643
No 25
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=98.29 E-value=1.6e-05 Score=83.78 Aligned_cols=134 Identities=15% Similarity=0.153 Sum_probs=94.4
Q ss_pred cceEEEEEEEeCCCeeec-CCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCC--C-C-C--------
Q 010811 21 KRSYQVVVAATRDMGIGK-DGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEH--R-P-L-------- 86 (500)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~--~-p-l-------- 86 (500)
-+-+.+-+|+|+||.|+. +|.--|. -++|.+++.++-.. .++|++|..|-..=.... + + +
T Consensus 146 rP~V~~k~A~SlDGkia~~~g~s~~is~~~~~~~~h~lRa~------~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~ 219 (367)
T PRK10786 146 FPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ------SHAILTSSATVLADDPALTVRWSELDAQTQALY 219 (367)
T ss_pred cceEEEEEeecCCCCccCCCCcccccCCHHHHHHHHHHHhH------CCEEEECcChHhhcCCCcccccccccccccccc
Confidence 456899999999999986 6776675 57888777776653 789999999985321000 0 0 0
Q ss_pred -----CCCcEEEEcCCCCCCCC------CCC---------------CE---EEE-----CCHHHHHHHHHcCCCCCCCCc
Q 010811 87 -----PGRLNVVLTRSGSFDIA------TVE---------------NV---VIC-----GSIGSALELLAASPYCLSIEK 132 (500)
Q Consensus 87 -----~~R~nIVlSrt~~~~~~------~~~---------------~~---~v~-----~sl~eai~~l~~~~~~~~~~~ 132 (500)
+.-..||++++...+.. ..+ ++ .+. -++.++++.|.+. +.+.
T Consensus 220 ~~~~~~~P~rvV~d~~g~l~~~~~~f~~~~~~~i~~~~~~~~~~~~~~~~~~v~~~~~~vdl~~~L~~L~~~----Gi~~ 295 (367)
T PRK10786 220 PQENLRQPVRIVIDSQNRVTPEHRIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHLDLVVLMMQLGKQ----QINS 295 (367)
T ss_pred ccccCCCCcEEEEcCCCCCCchhhhhcCCCCEEEEEcCchhhhhhcCceEEEEeCCCCCcCHHHHHHHHHhC----CCCE
Confidence 11235888887532100 000 10 111 1677888888765 6899
Q ss_pred EEEEecHHHHHHHhcCCCcCEEEEEEECcccc
Q 010811 133 VFVIGGGQILSEALNAPECDAIHITEIETRIE 164 (500)
Q Consensus 133 I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~ 164 (500)
|||-||+.+..+|++++++||+++++.|..+.
T Consensus 296 l~veGG~~l~~~~l~~~lvDe~~~~~aP~~~G 327 (367)
T PRK10786 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLG 327 (367)
T ss_pred EEEeeCHHHHHHHHHCCCccEEEEEEcceecc
Confidence 99999999999999999999999999998774
No 26
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=97.50 E-value=0.0025 Score=67.61 Aligned_cols=131 Identities=15% Similarity=0.135 Sum_probs=84.1
Q ss_pred cceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEcccccccc-CC-CCC-C-CCCCcEEEEc
Q 010811 21 KRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESI-PL-EHR-P-LPGRLNVVLT 95 (500)
Q Consensus 21 mrki~livAvs~dG~IG~-~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyesl-p~-~~~-p-l~~R~nIVlS 95 (500)
.+-+.+-+|+|+||.|+. .|.--|.-..+....+. ..++|+.| +|--.= |. .-+ | .++-..||++
T Consensus 175 rP~V~lK~A~SlDGkia~~~g~s~~~s~~~vh~lRa---------~~DAIlVG-~Tv~~DnP~Lt~R~~~~~~PiRVVld 244 (380)
T PLN02807 175 KPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQLLQ---------EYDAVILS-SALADADPLPLSQEAGAKQPLRIIIA 244 (380)
T ss_pred cccEEEEEEEcCCCCeeCCCCCChhhhhHHHHHHHh---------hCCEEEEc-CEeeccCCCCccCCCCCCCCEEEEEc
Confidence 467899999999999986 44433322222233332 16799999 886421 10 001 1 1122357777
Q ss_pred CCCCCCC-------CCCCCEEE-------------------E--C--CHHHHHHHHHcCCCCCCCCcEEEEe------cH
Q 010811 96 RSGSFDI-------ATVENVVI-------------------C--G--SIGSALELLAASPYCLSIEKVFVIG------GG 139 (500)
Q Consensus 96 rt~~~~~-------~~~~~~~v-------------------~--~--sl~eai~~l~~~~~~~~~~~I~ViG------Ga 139 (500)
++...+. .....+++ . . ++.++++.|.+. +...|+|=| |+
T Consensus 245 ~~l~~p~~~~i~~~~~~~~~iv~t~~~~~~~~~l~~~gv~vv~~~~~dl~~iL~~L~~~----Gi~svLVEGG~~~~~G~ 320 (380)
T PLN02807 245 RSESSPLQIPSLREESAAKVLVLADKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQR----GLCSVLLDLRGNVGGLE 320 (380)
T ss_pred CCCCCCCcceecccCCCCCEEEEECCchhhHHHHHhCCeEEEECCCCCHHHHHHHHHHC----CCCEEEEecCCCCCCHH
Confidence 7653210 00001111 1 1 688888888766 689999999 89
Q ss_pred HHHHHHhcCCCcCEEEEEEECccccC
Q 010811 140 QILSEALNAPECDAIHITEIETRIEC 165 (500)
Q Consensus 140 ~Iy~~~L~~~lvDei~lT~I~~~~~G 165 (500)
++..+|++++++||+++++.|..+.+
T Consensus 321 ~L~~sfl~~~LvDei~~yiAP~ilG~ 346 (380)
T PLN02807 321 SLLKDALEDKLLQKVVVEVLPFWSGS 346 (380)
T ss_pred HHHHHHHHCCCccEEEEEEcCceecC
Confidence 99999999999999999999988854
No 27
>PRK00536 speE spermidine synthase; Provisional
Probab=33.85 E-value=23 Score=35.86 Aligned_cols=43 Identities=12% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCcEEEEecHH--HHHHHhcCCCcCEEEEEEECccc--cCcccCCCCC
Q 010811 129 SIEKVFVIGGGQ--ILSEALNAPECDAIHITEIETRI--ECDTFIPSID 173 (500)
Q Consensus 129 ~~~~I~ViGGa~--Iy~~~L~~~lvDei~lT~I~~~~--~Gd~fFP~~~ 173 (500)
..++|.|+||+. +.++.|+|+ +++.+-.|+..+ -|..|||.+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~ 118 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFH 118 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHH
Confidence 468999999974 999999987 477777776544 5888999754
No 28
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=32.88 E-value=67 Score=28.33 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=54.1
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010811 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (500)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~ 103 (500)
..+++++. ...+++-++.|...-|++.+.+... ..+++.|.|.++.-- |.++ . ..
T Consensus 22 ~~~~~~lN--d~~aDG~DvSWiWDvdFE~L~~~~i-------~~viv~G~Ra~Dmal--------RLky--A------Gv 76 (113)
T PF08353_consen 22 KSVLIALN--DNYADGRDVSWIWDVDFEKLADPNI-------KQVIVSGTRAEDMAL--------RLKY--A------GV 76 (113)
T ss_pred ceEEEEec--CCCCCCccceEEeecCHHHHhcCCC-------CEEEEEeeeHHHHHh--------Heee--c------Cc
Confidence 34455553 3346667789998888888865543 468999999888542 2111 0 01
Q ss_pred CCCCEEEECCHHHHHHH--HHcCCCCCCCCcEEEEe
Q 010811 104 TVENVVICGSIGSALEL--LAASPYCLSIEKVFVIG 137 (500)
Q Consensus 104 ~~~~~~v~~sl~eai~~--l~~~~~~~~~~~I~ViG 137 (500)
..+.+.+..++++|++. +... +.+.++|+.
T Consensus 77 ~~~~i~v~~d~~~a~~~~~~~~~----~~~~~yil~ 108 (113)
T PF08353_consen 77 DEEKIIVEEDLEEALDAFLIKSD----PTDKVYILA 108 (113)
T ss_pred chHHeEecCCHHHHHHHHHHhcC----CCCcEEEEE
Confidence 12346677899999998 4443 367798874
No 29
>PHA03370 virion protein US2; Provisional
Probab=31.19 E-value=1.5e+02 Score=29.71 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=38.9
Q ss_pred CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHh-cCCCcCEEEEEEECccccCc
Q 010811 113 SIGSALELLAASPYCLSIEKVFVIGGGQILSEAL-NAPECDAIHITEIETRIECD 166 (500)
Q Consensus 113 sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L-~~~lvDei~lT~I~~~~~Gd 166 (500)
|+..-...|.+.......-+.||+|-|.|++.++ ..++--++....|+....|-
T Consensus 113 sv~sGy~~LnSg~~gn~pyhLWVlGAADLC~p~~e~ip~pkRli~~kv~~tW~G~ 167 (269)
T PHA03370 113 DVLSGYLMLESEVSGNHSYSLWIVGAADICRPAIEQIPLPKRLLAIKVPGTWSGM 167 (269)
T ss_pred hHHHHHHHhccccccCcceeeEEechHHHHHHHHHhCCCCceEEEEEcCccccCC
Confidence 5555666776543222344699999999999999 45666788888899887664
No 30
>KOG4101 consensus Cysteine-rich hydrophobic proteins [General function prediction only]
Probab=22.94 E-value=1.1e+02 Score=28.30 Aligned_cols=58 Identities=26% Similarity=0.476 Sum_probs=40.1
Q ss_pred CCceeeeeccceeEEeCCCCCccccccccc---HHHHHHHHHHHHhCC--CChhHhh--------hcCccccc
Q 010811 265 TGTGTLSKFGCQMRYNLRTTFPLLTTKKVF---WRGVVEELLWFISGS--TNAKVLQ--------EKDIHIWD 324 (500)
Q Consensus 265 tg~~t~~i~g~~~~~dl~~~fPllT~kk~~---~k~~~~EllW~l~G~--~~~~~L~--------~~~~~iWd 324 (500)
+|+|.+.+||..-||+ ..||---|-+++ +|+-++-.--.|+.. .|+++|- -.||.+|-
T Consensus 43 RG~GniTVFGlsnrFn--tEfP~~Ltg~vAPEEfkati~RvNsvLKk~lpvnvrWLlCGc~cCCCtlGCSmWP 113 (175)
T KOG4101|consen 43 RGAGNITVFGLSNRFN--TEFPSELTGKVAPEEFKATIGRVNSVLKKHLPVNVRWLLCGCLCCCCTLGCSMWP 113 (175)
T ss_pred eccCceEEEecccccc--ccCChhhccccCHHHHHHHHHHHHHHHHhcCCchhHHHHhhHHHHhhccCccccc
Confidence 3899999999999886 457665555554 566666665555554 5666663 37888885
Done!