Query 010811
Match_columns 500
No_of_seqs 307 out of 2480
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 14:45:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nrr_A Dihydrofolate reductase 100.0 2E-135 8E-140 1085.5 44.1 473 16-498 7-486 (515)
2 3hj3_A Chain A, crystal struct 100.0 6E-134 2E-138 1076.0 41.0 472 20-498 3-492 (521)
3 3irm_A Bifunctional dihydrofol 100.0 4E-132 1E-136 1061.8 42.1 444 16-498 15-492 (521)
4 3qg2_A Bifunctional dihydrofol 100.0 1E-132 3E-137 1073.7 37.1 473 21-498 25-579 (608)
5 3ed7_A Tsase, TS, thymidylate 100.0 5.8E-95 2E-99 721.1 22.1 259 240-498 8-266 (295)
6 1j3k_C Bifunctional dihydrofol 100.0 2.4E-93 8.2E-98 718.7 24.8 277 222-498 23-299 (328)
7 3kgb_A Thymidylate synthase 1/ 100.0 1.1E-93 3.8E-98 712.6 20.3 258 240-498 5-263 (294)
8 1f28_A Thymidylate synthase; b 100.0 2.5E-91 8.7E-96 699.0 22.2 259 240-498 2-268 (297)
9 2aaz_A TS, tsase, thymidylate 100.0 5.6E-91 1.9E-95 700.4 24.6 259 240-498 16-285 (317)
10 1hw4_A TS, thymidylate synthas 100.0 9E-91 3.1E-95 703.4 24.2 259 240-498 68-326 (355)
11 4dq1_A TS, tsase, thymidylate 100.0 7.8E-91 2.7E-95 696.7 21.4 250 241-498 6-293 (321)
12 3v8h_A TS, tsase, thymidylate 100.0 2.9E-89 9.9E-94 688.7 18.7 255 241-498 2-287 (327)
13 3uwl_A TS, tsase, thymidylate 100.0 4.7E-88 1.6E-92 682.4 22.3 247 244-498 2-286 (315)
14 3qj7_A TS, tsase, thymidylate 100.0 1.7E-87 6E-92 659.8 20.8 235 243-498 1-235 (264)
15 2g8o_A TS, tsase, thymidylate 100.0 1E-84 3.4E-89 643.6 21.2 235 244-498 1-235 (264)
16 1tis_A Thymidylate synthase; t 100.0 2.1E-85 7.1E-90 652.5 15.6 238 244-498 1-245 (286)
17 3ix6_A TS, tsase, thymidylate 100.0 3.7E-84 1.3E-88 662.3 20.3 238 241-498 94-331 (360)
18 1bkp_A Thymidylate synthase A; 100.0 4.3E-83 1.5E-87 635.0 22.0 237 242-498 2-249 (278)
19 1b5e_A Protein (deoxycytidylat 100.0 1.1E-70 3.9E-75 540.1 17.5 220 241-491 6-237 (246)
20 3rg9_A Bifunctional dihydrofol 100.0 1.8E-43 6.1E-48 346.6 14.8 186 16-201 21-239 (240)
21 3nzb_X Dihydrofolate reductase 100.0 2.7E-42 9.4E-47 331.9 15.1 181 19-201 2-205 (206)
22 3s9u_A Dihydrofolate reductase 100.0 2.6E-41 8.9E-46 314.4 19.4 158 23-201 5-164 (165)
23 3tq8_A Dihydrofolate reductase 100.0 3.9E-41 1.3E-45 316.3 19.9 160 23-203 2-163 (178)
24 3ia4_A Dihydrofolate reductase 100.0 2.3E-41 8E-46 313.8 17.1 158 23-201 2-161 (162)
25 3dau_A Dihydrofolate reductase 100.0 4E-41 1.4E-45 311.2 15.6 157 23-201 1-159 (159)
26 3ix9_A Dihydrofolate reductase 100.0 4.6E-40 1.6E-44 312.3 20.0 162 21-201 22-186 (190)
27 1kmv_A DHFR, dihydrofolate red 100.0 3.7E-40 1.3E-44 312.2 18.8 178 21-201 1-185 (186)
28 3dfr_A Dihydrofolate reductase 100.0 5.5E-40 1.9E-44 304.7 17.5 159 25-201 2-161 (162)
29 2bl9_A Dihydrofolate reductase 100.0 9.9E-40 3.4E-44 319.5 14.0 174 23-201 26-238 (238)
30 2w3w_A Dihydrofolate reductase 100.0 3.8E-38 1.3E-42 293.6 17.1 160 23-201 5-167 (167)
31 1zdr_A Dihydrofolate reductase 100.0 1.4E-37 4.7E-42 288.8 20.5 158 24-201 2-161 (164)
32 1j3k_A Bifunctional dihydrofol 100.0 7.9E-39 2.7E-43 319.3 12.0 178 23-205 27-233 (280)
33 2w9h_A DHFR, dihydrofolate red 100.0 1.7E-37 5.7E-42 287.0 16.9 155 23-201 2-158 (159)
34 1vdr_A DHFR, dihydrofolate red 100.0 3.6E-37 1.2E-41 285.3 18.1 156 23-201 2-158 (162)
35 1df7_A DHFR, dihydrofolate red 100.0 2.8E-37 9.4E-42 285.7 16.3 154 24-201 2-159 (159)
36 3cse_A Dihydrofolate reductase 100.0 1.1E-36 3.9E-41 296.7 12.3 178 22-202 4-218 (227)
37 1aoe_A DHFR, dihydrofolate red 100.0 3.8E-36 1.3E-40 286.1 14.5 172 22-201 4-192 (192)
38 1juv_A DHFR, dihydrofolate red 100.0 1.1E-31 3.6E-36 255.7 8.6 131 24-171 2-162 (193)
39 1cz3_A Dihydrofolate reductase 100.0 4.9E-29 1.7E-33 231.6 18.4 163 22-203 1-166 (168)
40 3jtw_A Dihydrofolate reductase 100.0 4.8E-29 1.7E-33 234.1 15.7 162 21-200 3-177 (178)
41 3ky8_A Putative riboflavin bio 99.9 1.7E-26 5.8E-31 220.5 16.1 165 20-201 18-195 (197)
42 2xw7_A Dihydrofolate reductase 99.9 3.3E-26 1.1E-30 214.2 10.8 163 20-201 2-174 (178)
43 2gd9_A Hypothetical protein YY 99.9 8.8E-25 3E-29 206.2 11.9 165 19-201 6-188 (189)
44 3kgy_A Bifunctional deaminase- 99.9 5.3E-23 1.8E-27 200.4 13.2 172 20-200 19-230 (231)
45 2b3z_A Riboflavin biosynthesis 99.7 3E-16 1E-20 163.2 15.1 167 20-201 156-371 (373)
46 2azn_A HTP reductase, putative 99.6 1.3E-14 4.4E-19 139.8 19.2 166 20-201 2-218 (219)
47 2hxv_A Diaminohydroxyphosphori 99.4 4.9E-12 1.7E-16 130.9 20.2 165 20-201 158-357 (360)
48 2g6v_A Riboflavin biosynthesis 99.4 2.5E-12 8.5E-17 135.0 18.2 153 20-183 172-381 (402)
49 2p4g_A Hypothetical protein; p 99.4 3.2E-11 1.1E-15 120.0 20.1 170 20-203 32-263 (270)
50 3r68_A Na(+)/H(+) exchange reg 26.4 70 0.0024 24.8 4.3 45 451-495 41-85 (95)
51 2pa1_A PDZ and LIM domain prot 21.5 1.3E+02 0.0044 22.9 4.9 36 452-487 39-74 (87)
No 1
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=2.3e-135 Score=1085.53 Aligned_cols=473 Identities=43% Similarity=0.764 Sum_probs=438.0
Q ss_pred cCCCCcceEEEEEEEeCCCeeecCCCCCCC-ChhhHHHHHHHhcc------cCCCCCCcEEEEccccccccCCCCCCCCC
Q 010811 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWK-LPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPG 88 (500)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~lpW~-~~eD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~~ 88 (500)
...++||+|++|+|+|+||+||.+|+|||+ +|+||+||+++|++ +++|++.++||||||||||+|.+++|||+
T Consensus 7 ~~~~~MrkI~livA~SldG~IG~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~~~rPLp~ 86 (515)
T 3nrr_A 7 NSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKN 86 (515)
T ss_dssp CTTTTCCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCTT
T ss_pred CCCCCCceEEEEEEECCCCcCCCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhhccCCCCC
Confidence 345669999999999999999999999999 99999999999985 34567789999999999999865689999
Q ss_pred CcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCccc
Q 010811 89 RLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTF 168 (500)
Q Consensus 89 R~nIVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~f 168 (500)
|+||||||+... .+++.+++|+++|++.+++.+ ++++||||||++||+++|++++||+++||+||..++||+|
T Consensus 87 R~nIVlSrt~~~----~~~v~V~~sl~eal~~Lk~~~---~~~~I~VIGGg~Iy~~~L~~~liDel~LT~I~~~~~GDtf 159 (515)
T 3nrr_A 87 RINVILSRTVKE----VPGCLVYEDLSTAIRDLRANV---PHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTY 159 (515)
T ss_dssp EEEEEECSSCCC----CTTEEEESSHHHHHHHHHHHS---CCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSEE
T ss_pred CeEEEECCCCCC----CCCEEEECCHHHHHHHHhhcc---CCCCEEEECCHHHHHHHhhCCCCCEEEEEEecCccCCCcc
Confidence 999999999842 357899999999999998641 3689999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEeeeecCceecCccEEEEEEEEcccchhhccccCCccccccCCCCCcccccccccCCcccccChhHHHHH
Q 010811 169 IPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDSKTNSDKFEVKQFSFLPKMVFEKHEEYLYL 248 (500)
Q Consensus 169 FP~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl 248 (500)
||++ ...|++++.+...+++++.|+|++|+|+++.+.+..+ ++ ......+++++|+...+++||++.+.+|+|+|||
T Consensus 160 FP~~-~~~w~~v~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yl 236 (515)
T 3nrr_A 160 FPDI-PDTFEITAISPTFSTDFVSYDFVIYERKDCKTVFPDP-PF-DQLLMTGTDISVPKPKYVACPGVRIRNHEEFQYL 236 (515)
T ss_dssp CCCC-CTTEEEEEECCCEECSSCEEEEEEEEECC------CC-CH-HHHHTTCSCSSCCCCSCCSSTTCCEECSTHHHHH
T ss_pred CCCc-hhhCEEEEEecccccCCCceEEEEEEEcccccccccc-cc-cccccccccccccccccccccccccCCchHHHHH
Confidence 9999 7789999877666788999999999999776544221 11 1124568888888889999999999999999999
Q ss_pred HHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccccCcch
Q 010811 249 RLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNAS 328 (500)
Q Consensus 249 ~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iWd~~~~ 328 (500)
+||++||++|+.++||||+||+|+||++|||||+++||++||||++||++++|||||++|+||+++|+++||+|||+|++
T Consensus 237 ~l~~~il~~G~~~~dRtg~~t~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~g~tn~~~l~~~g~~iWd~n~~ 316 (515)
T 3nrr_A 237 DILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLWFIKGSTNGNDLLAKNVRIWELNGR 316 (515)
T ss_dssp HHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTHHHHS
T ss_pred HHHHHHHHhCcCCCCCCCCCeEEeccceEEEecccCCcceeecccchhhhHHHHHHHHhCCccHHHHHHcCCeecCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccCCCCCC
Q 010811 329 REYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPP 408 (500)
Q Consensus 329 ~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~P 408 (500)
++||++.|+.++++||||++||+|||+|++.|.+|+++|+++++|||++||++||+||+|||+|+++|||.++++|+|||
T Consensus 317 ~~wl~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~i~s~wnp~~~~~malpP 396 (515)
T 3nrr_A 317 RDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMHADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPP 396 (515)
T ss_dssp HHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCC
T ss_pred hhhhhhcCCccccCCcCcchhhhheeeCCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecChhhhccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCC
Q 010811 409 CHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPK 488 (500)
Q Consensus 409 C~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~ 488 (500)
||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+
T Consensus 397 Ch~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ql~R~p~ 476 (515)
T 3nrr_A 397 CHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIARIPH 476 (515)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCC
T ss_pred CceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCeeeEEEEEEEeEEEcHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEecCC
Q 010811 489 PFPVSIIIDI 498 (500)
Q Consensus 489 ~~P~l~~~~~ 498 (500)
++|+|+|||+
T Consensus 477 ~~P~l~i~~~ 486 (515)
T 3nrr_A 477 PFPRLRLNPD 486 (515)
T ss_dssp CCCEEEECTT
T ss_pred CCCEEEECCC
Confidence 9999999975
No 2
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=5.7e-134 Score=1076.04 Aligned_cols=472 Identities=46% Similarity=0.823 Sum_probs=434.5
Q ss_pred CcceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 010811 20 PKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~ 99 (500)
.||+|++|+|+|+||+||.+|+|||++|+|++||+++|++.++|++.++|||||||||+++ +||||+|+||||||+..
T Consensus 3 ~MrkI~lIvA~SldG~IG~dg~LpW~lpeDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsig--~~PLp~R~nIVlSrt~~ 80 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIG--RRPLKNRIIVVISSSLP 80 (521)
T ss_dssp CCCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGT--TCCCTTSEEEEECSSSC
T ss_pred CCceEEEEEEECCCCcEECCCCCCCCCHHHHHHHHHHHcCCCccccCCEEEEcccHHhhcC--cccCCCCeEEEEcCCCc
Confidence 4899999999999999999999999999999999999987777888899999999999994 58999999999999985
Q ss_pred CCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECc-cccCcccCCCCCCCCcE
Q 010811 100 FDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIET-RIECDTFIPSIDSSVFQ 178 (500)
Q Consensus 100 ~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~-~~~Gd~fFP~~~~~~~~ 178 (500)
.. ...+++++++|+++|++.+++.+ +.++|||+||++||+++|++++||+++||+||+ .++||+|||+++.+ |+
T Consensus 81 ~~-~~~~~~~V~~sl~eal~~lk~~~---g~~~I~VIGGa~ly~~~L~~~liDel~LT~Ipv~~~~GDtfFP~~d~~-w~ 155 (521)
T 3hj3_A 81 QD-EADPNVVVFRNLEDSIENLMNDD---SIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPET-FL 155 (521)
T ss_dssp CC-CSCSSEEEESSTTTTTTSSSSCT---TEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTT-EE
T ss_pred cc-CCCCCEEEECCHHHHHHHHhhcc---CCCCEEEEeCHHHHHHHhcCCCCCEEEEEEEeccCcCcCccCCCCCCC-cE
Confidence 41 12356889999999999998752 247899999999999999999999999999999 78999999999988 99
Q ss_pred EeeeecCceecCccEEEEEEEE-cccchhhccccCCcc--------------ccccCCCCCcccccccccCCcccc-cCh
Q 010811 179 PWYSSFPIVENNIRYCLSTYVR-VRSAAVESLSQNNDI--------------VLDSKTNSDKFEVKQFSFLPKMVF-EKH 242 (500)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r-~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 242 (500)
+++.+....++++.|+|++|+| .++.+.+..+..+.. +..+.+++++++.+.++++|++.+ .+|
T Consensus 156 lv~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (521)
T 3hj3_A 156 PVYMSQTFCTKNISYDFMIFEKQEKKTLQNCDPARGQLKSIDDTVDLLGEIAGIRKMGNRHKFPKEEIYNTPSIRFGREH 235 (521)
T ss_dssp EEEECCCEEETTEEECCEEEEECCC-----------CCHHHHHHHHHHHHHHGGGSHHHHTCCCCGGGSSSTTCSSCBCS
T ss_pred EEEeecccccCCCceEEEEEEecCcccccccccccccccccccccccccccccccccccccccccccccccccccccCCc
Confidence 9987766677899999999999 455554443333222 234456678899899999999999 899
Q ss_pred hHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCccc
Q 010811 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (500)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~i 322 (500)
+|+|||++|++||++|+.++||||+||+|+||++|||||+++||++||||++||++++||||||+|+||+++|+++||+|
T Consensus 236 ~~~~Yl~l~~~Il~~G~~~~dRtg~gt~s~fg~~~r~dl~~~fPllTtkk~~~k~~i~EllWfl~G~tn~~~l~~~gv~i 315 (521)
T 3hj3_A 236 YEFQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYI 315 (521)
T ss_dssp THHHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSSCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCT
T ss_pred hHHHHHHHHHHHHHcCcCcCCCCCCceEEeccceEEEccccCcceeeeccccHHHHHHHHHHHHhCCccHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccc
Q 010811 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (500)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~ 402 (500)
||+|++++|+++.|+.++++||||++||+|||+||+.|.+|+++|+++++|||++||++||+||+|||+|+++|||.+++
T Consensus 316 Wd~n~~~~~l~~~~~~~~~~g~lG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~lk~nP~sRR~ivs~wnp~d~~ 395 (521)
T 3hj3_A 316 WSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALS 395 (521)
T ss_dssp TSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHSTTSSCCEEECCCTTTGG
T ss_pred cCccchhhhhhhcccccccCCcccchhhhheeeCCCccccccccccccchhHHHHHHHHHhcCCCcceeEEEecChhHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcceeeEEEEEC-CEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHH
Q 010811 403 LMALPPCHMFAQFYMAN-GELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEE 481 (500)
Q Consensus 403 ~~~~~PC~~~~qf~v~~-gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~ 481 (500)
+|+|||||.++||+|++ |+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++
T Consensus 396 ~malpPCh~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~~~~ 475 (521)
T 3hj3_A 396 QMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKE 475 (521)
T ss_dssp GSSSCCSEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHH
T ss_pred cCCCCCceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceEEEEEeeeeEEehhHHHHHHH
Confidence 99999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCeEEecCC
Q 010811 482 QLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 482 ~l~r~p~~~P~l~~~~~ 498 (500)
||+|+|+++|+|+|||+
T Consensus 476 ql~R~p~~~P~l~i~~~ 492 (521)
T 3hj3_A 476 QLSRTPRPFPQLKFKRK 492 (521)
T ss_dssp HTTSCCCCCCEEEESSC
T ss_pred HhcCCCCCCCEEEECCC
Confidence 99999999999999975
No 3
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=4e-132 Score=1061.79 Aligned_cols=444 Identities=52% Similarity=0.934 Sum_probs=416.0
Q ss_pred cCCCCcceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcc------cCCCCCCcEEEEccccccccCCCCCCCCCC
Q 010811 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (500)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~~R 89 (500)
...++|++|++|||++.||+||.+|+|||++|+||+||+++|++ +++|++.++||||||||||+|.+++|||+|
T Consensus 15 ~~~~~~~~islIvA~~~ng~IG~~g~LPW~Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~k~rPLP~R 94 (521)
T 3irm_A 15 GTRLALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGR 94 (521)
T ss_dssp GGSCSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTE
T ss_pred ccccCCceEEEEEEECCCCceecCCCcCCCChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCcccccCCCCCC
Confidence 44678999999999999999999999999999999999999997 566788899999999999999767899999
Q ss_pred cEEEEcCCCCCC-----C--------CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 010811 90 LNVVLTRSGSFD-----I--------ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (500)
Q Consensus 90 ~nIVlSrt~~~~-----~--------~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~---lvDe 153 (500)
.||||||+.... . ...+++.+++|+++|++.+++.++..+.++||||||++||+++|+++ +||+
T Consensus 95 ~NIVLSR~~~~~~~~~~~p~~~~~~~~~~~~v~V~~SleeAL~~l~~~~~~~~~~~VfVIGGa~IY~~~L~~~~~~l~D~ 174 (521)
T 3irm_A 95 LNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQA 174 (521)
T ss_dssp EEEEECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEecccccccccccccccccccccCCCCeEEECCHHHHHHHHhccccccCCCeEEEEcCHHHHHHHHhCCccccCCE
Confidence 999999997431 0 01356889999999999998764333467999999999999999998 9999
Q ss_pred EEEEEEC-ccccCcccC--CCCCCCC-----cEEeeeecCcee-cC--ccEEEEEEEEcccchhhccccCCccccccCCC
Q 010811 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFPIVE-NN--IRYCLSTYVRVRSAAVESLSQNNDIVLDSKTN 222 (500)
Q Consensus 154 i~lT~I~-~~~~Gd~fF--P~~~~~~-----~~l~~~~~~~~e-~~--~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~~~~ 222 (500)
++||+|+ ..++||+|| |+++.+. |++++.+....+ ++ +.|+|++|+|+
T Consensus 175 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~F~~y~r~--------------------- 233 (521)
T 3irm_A 175 IYRTTIRASESSCSVFFRVPESGTEAAAGIEWQRETISEELTSANGNETKYYFEKLIPR--------------------- 233 (521)
T ss_dssp EEEEEECCSSCCCSEECCCCCTTSGGGTTCCEEEEEECCCEECSSSSCCEEEEEEEEEC---------------------
T ss_pred EEEEEecCCCcccceecCCCCCChhhccccceEEEEeecccccCCCCeeeEEEEEEEEC---------------------
Confidence 9999999 888999999 8988766 999876544333 66 89999999983
Q ss_pred CCcccccccccCCcccccChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccHHHHHHH
Q 010811 223 SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEE 301 (500)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fPllT~kk~~~k~~~~E 301 (500)
+|+|+|||+||++||++|+.++||||+||+|+||++|||||++ +||++||||++||++++|
T Consensus 234 ------------------n~~~~~Yl~l~~~il~~G~~~~drtg~~t~s~fg~~~r~dl~~~~fPllTtkk~~~k~~i~E 295 (521)
T 3irm_A 234 ------------------NREEEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEE 295 (521)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHCEEEECTTCCEEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHH
T ss_pred ------------------ChhHHHHHHHHHHHHHhCcCCCCCCCCceEEecceeEEEeccCCCCcceeecccchhHHHHH
Confidence 5999999999999999999999999999999999999999999 799999999999999999
Q ss_pred HHHHHhCCCChhHhhhcCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHH
Q 010811 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINK 381 (500)
Q Consensus 302 llW~l~G~~~~~~L~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~ 381 (500)
||||++|+||+++|+++||+|||+|++++||++.|+.++++||||++||+|||+||+.|.+|+++|+++++|||++||++
T Consensus 296 llWfl~g~tn~~~l~~~g~~iWd~~~~~~~l~~~~~~~~~~gdlG~vYG~qwr~~~~~~~~~~~~~~g~~~DQi~~vi~~ 375 (521)
T 3irm_A 296 LLWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTHHDANYDGQGVDQIKAIVET 375 (521)
T ss_dssp HHHHHTTCCBTHHHHTTTCCTTSTTTSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHhcCCeecCcccchhhhhhcCCccccCCcchhhhhhhhhcCCccccccccCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceE
Q 010811 382 IKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGD 461 (500)
Q Consensus 382 Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~ 461 (500)
||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+
T Consensus 376 lk~nP~sRR~i~s~wnp~d~~~malpPCh~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~ 455 (521)
T 3irm_A 376 LKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGE 455 (521)
T ss_dssp HHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCceEEEEecChhHhhcCCCCCCceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCcceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 462 FIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 462 ~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|+|+++|+|||+||+|++++||+|+|+++|+|+||++
T Consensus 456 ~~h~~gdaHIY~nh~~~~~~ql~R~p~~~P~l~i~~~ 492 (521)
T 3irm_A 456 LVHTLGDAHVYSNHVEPCNEQLKRVPRAFPYLVFRRE 492 (521)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEESCC
T ss_pred EEEEEEEEEEehhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 9999999999999999999999999999999999975
No 4
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=100.00 E-value=1e-132 Score=1073.69 Aligned_cols=473 Identities=43% Similarity=0.788 Sum_probs=429.5
Q ss_pred cceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhccc----------------------------CCCCCCcEEEE
Q 010811 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQIT----------------------------SDAGKRNAVIM 71 (500)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW-~~~eD~~~F~~~T~~~----------------------------~~~~~~~~vIM 71 (500)
..++++|||++.+|+||.+|+||| |+|+||+||+++|+.+ .+|+++++|||
T Consensus 25 ~~~i~lIvA~~~n~gIG~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIM 104 (608)
T 3qg2_A 25 EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVM 104 (608)
T ss_dssp CSCCCCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEE
T ss_pred CceEEEEEEeCCCCccccCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEE
Confidence 567999999999999999999999 8999999999999832 14677899999
Q ss_pred ccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCc
Q 010811 72 GRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPEC 151 (500)
Q Consensus 72 GRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lv 151 (500)
|||||||+|.+++|||+|+||||||+.... ...+++.+++|+++|++.+++. +.++||||||++||+++|.+++|
T Consensus 105 GRKTfESIp~~frPLPgR~NIVLSR~~~~~-~~~~gv~V~~sleeal~~lk~~----~~~~IfVIGGa~IY~~~L~~~la 179 (608)
T 3qg2_A 105 GRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLI 179 (608)
T ss_dssp EHHHHHHSCGGGCSCTTEEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCC
T ss_pred chHHHHhhccccCCCCCCeEEEECCCCccc-cCCCCEEEECCHHHHHHHHhcC----CCCeEEEECCHHHHHHHcccCCC
Confidence 999999999656899999999999997421 1235688999999999999875 35799999999999999999999
Q ss_pred CEEEEEEECccccCcccCCCCCCCCcEEeeeecCceecCccEEEEEEEEcccchhhccccCCcccccc------------
Q 010811 152 DAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAAVESLSQNNDIVLDS------------ 219 (500)
Q Consensus 152 Dei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~~~~~~~~~~~~~~~~~~~------------ 219 (500)
|+++||+|+..++||+|||+++.+.|++++.+.+..++++.|+|++|+|+++.+.+..+.+++.+.+.
T Consensus 180 DeL~LT~I~~~~eGDtfFP~id~~~w~~~~~~~~~~~~~~~y~F~~y~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (608)
T 3qg2_A 180 KKIYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTC 259 (608)
T ss_dssp SEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC----------------------------
T ss_pred CEEEEEEeCCccCCCccCCCCChHHcEEEEEeeeeccCCCceEEEEEEECCCcccccccccccccccccccccccccccc
Confidence 99999999999999999999999899999888777889999999999999877655444333221100
Q ss_pred --------------------------------------CC--C-CCcccccccccCCcccccChhHHHHHHHHHHHHHCC
Q 010811 220 --------------------------------------KT--N-SDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDG 258 (500)
Q Consensus 220 --------------------------------------~~--~-~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G 258 (500)
.+ + +.+++...|+++|++.+++|+|+|||+||++||++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qYldl~~~Il~~G 339 (608)
T 3qg2_A 260 HMKKLTEFYKNVDKYKINYENDDDDEEEDDFVYFNFNKEKEEKNKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNG 339 (608)
T ss_dssp -----------------------CCHHHHHHHHHTTTCCSSCTTHHHHCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhcccCHHHHHHHHHHHHHHcC
Confidence 11 1 335666788999999999999999999999999999
Q ss_pred ccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccccCcchhhhhhhcCCC
Q 010811 259 NLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLT 338 (500)
Q Consensus 259 ~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iWd~~~~~~~~~~~~~~ 338 (500)
+.++||||+||+|+||++|||||+++||++||||++||++++||||||+|+||+++|+++|++|||+|++++|+++.|+.
T Consensus 340 ~~~~dRTGtgT~s~fg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~gv~IWd~n~~~~~~~~~~~~ 419 (608)
T 3qg2_A 340 NKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLF 419 (608)
T ss_dssp EEECCSSSCCEEEEEEEEEEEETTTCCCCCCSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTGGGGSHHHHHHTTCT
T ss_pred CccCCCCCCceEEecceeEEEccccCCceeecccccHHHHHHHHHHHHhCCccHHHHHHcCCCccCccchhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEEE
Q 010811 339 DREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMA 418 (500)
Q Consensus 339 ~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~ 418 (500)
++++||||++||+|||+||+.|.+|+++|+++++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|+
T Consensus 420 ~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~ 499 (608)
T 3qg2_A 420 HREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVF 499 (608)
T ss_dssp TSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGSSSCCSEEEEEEEEE
T ss_pred cccCCCCchhhhHhhhcCCCccccchhcccccchHHHHHHHHHHhhCCCccceEEEecChhHhccCCCCCceEEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 419 NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 419 ~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
+|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+|||+
T Consensus 500 ~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~i~~~ 579 (608)
T 3qg2_A 500 DGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPD 579 (608)
T ss_dssp TTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTT
T ss_pred CCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCeeeEEEEEeeeeEEeHhHHHHHHHHhcCCCCCCCEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999975
No 5
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=100.00 E-value=5.8e-95 Score=721.12 Aligned_cols=259 Identities=67% Similarity=1.182 Sum_probs=250.6
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcC
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~ 319 (500)
.+|+|+||+++|++||++|+.++||||+||+|+||++|||||+++||++||||++||++++|||||++|+||+++|+++|
T Consensus 8 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~g 87 (295)
T 3ed7_A 8 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 87 (295)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCTTTTCCHHHHHHHHHHHHTTCCBGGGGCC--
T ss_pred CCChHHHHHHHHHHHHHcCcCCCCCCCCceEEEcCceEEEecccCcceeecccccHHHHHHHHHHHHhCCccHHHHHHcC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 010811 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (500)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (500)
|+|||+|++++|+++.|+..+++||+|++||+|||+||+.|.+|+++|+|+++|||++||++||+||+|||+|+++|||.
T Consensus 88 v~IWd~~~~~~~~~~~g~~~~e~GdlGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp~ 167 (295)
T 3ed7_A 88 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 167 (295)
T ss_dssp ---CCSCSSCCGGGGSCHHHHHTTBCCSCTHHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccccchhhhhhhcccCCccCCCcCccchhhhhhccCCccccccccCCccchhHHHHHHHHHhcCCCCceeEEEecCHh
Confidence 99999999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHH
Q 010811 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (500)
Q Consensus 400 ~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (500)
++++|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 168 dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nH~e~~ 247 (295)
T 3ed7_A 168 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 247 (295)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred HhhcCCCCCceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCeeeEEEEEEEEEEecHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEecCC
Q 010811 480 EEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~ 498 (500)
++||+|+|+++|+|+||++
T Consensus 248 ~~qL~R~p~~~P~l~i~~~ 266 (295)
T 3ed7_A 248 KIQLQREPRPFPKLRILRK 266 (295)
T ss_dssp HHHTTSCCCCCCEEEECSC
T ss_pred HHHhcCCCCCCCEEEECCC
Confidence 9999999999999999975
No 6
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=100.00 E-value=2.4e-93 Score=718.66 Aligned_cols=277 Identities=55% Similarity=1.030 Sum_probs=269.6
Q ss_pred CCCcccccccccCCcccccChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHH
Q 010811 222 NSDKFEVKQFSFLPKMVFEKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEE 301 (500)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~E 301 (500)
.++.++...++++|+++..+++|+|||++|++||++|+.++||||+||+|+||++|||||++|||++||||++||++++|
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~e~qYldl~~~Il~~G~~~~dRTGtgT~svfg~q~rfdL~~gFPllTtKkv~~ks~i~E 102 (328)
T 1j3k_C 23 NKNSIHPNDFQIYNSLKYKYHPEYQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEE 102 (328)
T ss_dssp SCSCCCGGGGHHHHHCSEECSTHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHH
T ss_pred ccCcccccceeechhhcccCcHHHHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEccccCCcccccccccchhcHHH
Confidence 34446667788899998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCChhHhhhcCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHH
Q 010811 302 LLWFISGSTNAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINK 381 (500)
Q Consensus 302 llW~l~G~~~~~~L~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~ 381 (500)
|||||+|+||+++|+++||+|||+||+++|++++|++++++||||++||+|||+||+.|.+++.+|+|+++|||++||++
T Consensus 103 LLWfl~G~tni~~L~e~gv~IWd~wa~~~~ld~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~vI~~ 182 (328)
T 1j3k_C 103 LLWFIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINL 182 (328)
T ss_dssp HHHHHTTCCBHHHHHTTTCCTTSGGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHH
T ss_pred HHHHHhCCccHHHHHHcCCcccCccchhhhhhccccccccCCcccccCchHhhcCCcccccccccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceE
Q 010811 382 IKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGD 461 (500)
Q Consensus 382 Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~ 461 (500)
||+||+|||+|+++|||+++++|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+
T Consensus 183 Lk~nP~SRR~IvsaWnp~dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle~Ge 262 (328)
T 1j3k_C 183 IKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQ 262 (328)
T ss_dssp HHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HhcCCCCceEEEEccCHHHhcCCCCCCceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 462 FIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 462 ~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|+|+++|+|||+||+|++++||+|+|+++|+|+|||+
T Consensus 263 fih~igdaHIY~nhie~v~~qL~R~P~~~P~l~i~~~ 299 (328)
T 1j3k_C 263 FIHVLGNAHVYNNHIDSLKIQLNRIPYPFPTLKLNPD 299 (328)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECTT
T ss_pred EEEEEeeeEeeHHHHHHHHHHhcCCCCCCCeeEeCCC
Confidence 9999999999999999999999999999999999975
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=100.00 E-value=1.1e-93 Score=712.55 Aligned_cols=258 Identities=58% Similarity=1.085 Sum_probs=229.1
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCC-CCcccccccccHHHHHHHHHHHHhCCCChhHhhhc
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRT-TFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEK 318 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~-~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~ 318 (500)
.+|+|+||+++|++||++|+.++||||+||+|+||++|||||++ +||++||||++||++++|||||++|+||+++|+++
T Consensus 5 ~~~~~~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~~~fPllTtKkv~~k~ii~ELLWfl~G~tn~~~L~~~ 84 (294)
T 3kgb_A 5 PRHPEHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEELLFFLRGETDSKVLEKK 84 (294)
T ss_dssp --CTHHHHHHHHHHHHHHCEEEC----CCEEEEEEEEEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCCTHHHHTT
T ss_pred CCchHHHHHHHHHHHHHhCcCcCCCCCCceEEeccceEEEecccCccceeeeccccHHHHHHHHHHHHhCCccHHHHHhc
Confidence 36999999999999999999999999999999999999999999 69999999999999999999999999999999999
Q ss_pred CcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCc
Q 010811 319 DIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNP 398 (500)
Q Consensus 319 ~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p 398 (500)
||+|||+|++++|+++.|+ ++++|||||+||+|||+||+.|.+|+++|+++++|||++||++||+||+|||+|+++|||
T Consensus 85 gv~IWd~~~~~~~~~~~~~-~~e~GdlGpvYG~QwR~~~~~y~~~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~ivsaWnp 163 (294)
T 3kgb_A 85 GVRIWEKNGAKQFLQSVGI-DREEGDLGPIYGFQWRHFGARYETSASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNP 163 (294)
T ss_dssp TCC----------------------CCCSCHHHHHHSBTCCCCCTTSCCTTSSBCHHHHHHHHHHHCTTCSCCEEECCCT
T ss_pred CCCccccchhhhhhhcccc-cccCCCCccccchhhhcCCCccccccccccccchhHHHHHHHHHhcCCCccceEEEecCh
Confidence 9999999999999999998 688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHH
Q 010811 399 SDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRP 478 (500)
Q Consensus 399 ~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~ 478 (500)
.++++|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|+
T Consensus 164 ~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~~G~f~h~~gdaHIY~nH~e~ 243 (294)
T 3kgb_A 164 TDLGSMALPPCHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDS 243 (294)
T ss_dssp TCHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHH
T ss_pred hHhcCCCCCCCCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCeeEEEEEEEEeEEecHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCeEEecCC
Q 010811 479 LEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 479 ~~~~l~r~p~~~P~l~~~~~ 498 (500)
+++||+|+|+++|+|+|||+
T Consensus 244 ~~~qL~R~p~~~P~l~i~~~ 263 (294)
T 3kgb_A 244 LRQQIQRPPRAFPKLFVSPK 263 (294)
T ss_dssp HHHHTTSCCCCCCEEEECCS
T ss_pred HHHHhcCCCCCCCEEEECCc
Confidence 99999999999999999986
No 8
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=100.00 E-value=2.5e-91 Score=698.96 Aligned_cols=259 Identities=65% Similarity=1.179 Sum_probs=254.6
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccHHHHHHHHHHHHhCCCChhHhhh
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE 317 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~-~~~~dl~~~-fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~ 317 (500)
++|+|+|||++|++||++|+.++||||+||+|+||+ +|||||+++ ||++||||++||++++||||||+|+||+++|++
T Consensus 2 ~~~~e~qYldl~~~Il~~G~~~~dRTG~gT~s~fg~pq~rfdl~~g~fPllTtKkv~~ks~i~ELLWfl~G~tn~~~L~~ 81 (297)
T 1f28_A 2 VNAEEQQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLRE 81 (297)
T ss_dssp -CHHHHHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHT
T ss_pred CCchHHHHHHHHHHHHHcCCCcCCCCCCceEeeeccceEEEecCCCcccccccCCccccccHHHHHHHHhCCCcHHHHHH
Confidence 468899999999999999999999999999999999 999999999 999999999999999999999999999999999
Q ss_pred cCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeC
Q 010811 318 KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397 (500)
Q Consensus 318 ~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~ 397 (500)
+||+|||+|++++|+++.|++++++||+|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++||
T Consensus 82 ~gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~~y~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wn 161 (297)
T 1f28_A 82 KNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWN 161 (297)
T ss_dssp TTCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCCcCCccccHHHHhhcccccccCCcccccchhhhhcCCccccCcccccCCCCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeeEEEEE------CCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccc
Q 010811 398 PSDLKLMALPPCHMFAQFYMA------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHV 471 (500)
Q Consensus 398 p~~~~~~~~~PC~~~~qf~v~------~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HI 471 (500)
|+++++|+|||||.++||+|+ +|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+||
T Consensus 162 p~dl~~malpPCh~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHI 241 (297)
T 1f28_A 162 PADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHI 241 (297)
T ss_dssp TTTGGGSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEE
T ss_pred hhHhhcCCCCCceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCeeEEEEEEeeeeEe
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 472 YRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 472 Y~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|+||+|++++||+|+|+++|+|+|||+
T Consensus 242 Y~nh~e~v~~qL~R~p~~~P~l~i~~~ 268 (297)
T 1f28_A 242 YKDHIEALQQQLTRSPRPFPTLSLNRS 268 (297)
T ss_dssp EHHHHHHHHTGGGSCCCCCCEEEECSC
T ss_pred eHhHHHHHHHHHhcCCCCCCEeeeCCC
Confidence 999999999999999999999999975
No 9
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=100.00 E-value=5.6e-91 Score=700.37 Aligned_cols=259 Identities=61% Similarity=1.099 Sum_probs=255.0
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccc-eeEEeCCCC-CcccccccccHHHHHHHHHHHHhCCCChhHhhh
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGC-QMRYNLRTT-FPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE 317 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~-~~~~dl~~~-fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~ 317 (500)
.+++|+|||++|++||++|+.++||||+||+|+||+ +|||||+++ ||++||||++||++++||||||+|+||+++|++
T Consensus 16 ~~~~e~qYldl~~~Il~~G~~~~dRTGtgT~sifg~~q~rfdL~~g~fPllTtKkv~~ks~i~ELLWfl~G~tni~~L~~ 95 (317)
T 2aaz_A 16 PDHEEYQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAELLWFVSGCTDAKMLSS 95 (317)
T ss_dssp TTCTHHHHHHHHHHHHHHCEEECCTTSSCEEEEESCCCEEEECCTTBCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHT
T ss_pred cCcHHHHHHHHHHHHHHcCCCccCCCCCceEeecCceeEEEecCCCcceecccCccchHhhHHHHHHHHhCCCcHHHHHh
Confidence 468899999999999999999999999999999999 999999999 999999999999999999999999999999999
Q ss_pred cCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeC
Q 010811 318 KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWN 397 (500)
Q Consensus 318 ~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~ 397 (500)
+|++|||+|++++|+++.|++++++||+|++||+|||+|++.|.+++.+|+|+++|||++||++||+||+|||+|+++||
T Consensus 96 ~gv~IWd~w~~~~~l~~~g~~~~~~GdlGpvYG~qwR~~~~~Y~~~~~dy~G~~iDQi~~vI~~Lk~nP~SRR~IvsaWn 175 (317)
T 2aaz_A 96 QGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWN 175 (317)
T ss_dssp TTCCTTHHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCC
T ss_pred cCCcccCcchhhhhhhccCcccccCCCcCcccchHhhcCCccccCcccccccccHHHHHHHHHHHhcCCCCceEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcceeeEEEEE---------CCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECc
Q 010811 398 PSDLKLMALPPCHMFAQFYMA---------NGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGD 468 (500)
Q Consensus 398 p~~~~~~~~~PC~~~~qf~v~---------~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~ 468 (500)
|.++++|+|||||.++||+|+ +|+|+|++||||||+++|+||||++|++|++|||++||+++|+|+|+++|
T Consensus 176 p~dl~~maLpPCh~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~~G~f~h~~gd 255 (317)
T 2aaz_A 176 PKDLPLMALPPCHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGD 255 (317)
T ss_dssp TTTGGGSSSCCSEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE
T ss_pred hhHhhcCCCCCcceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEeee
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred ccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 469 AHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 469 ~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
+|||+||+|++++||+|+|+++|+|+||++
T Consensus 256 aHIY~nH~e~v~~qL~R~p~~~P~l~i~~~ 285 (317)
T 2aaz_A 256 AHVYRDHVEPLKTQLEREPRDFPKLKWARS 285 (317)
T ss_dssp EEEEGGGHHHHHHHHTSCCCCCCEEEESSC
T ss_pred eEeeHhHHHHHHHHHhcCCCCCCeEEECCc
Confidence 999999999999999999999999999975
No 10
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=100.00 E-value=9e-91 Score=703.43 Aligned_cols=259 Identities=67% Similarity=1.182 Sum_probs=233.6
Q ss_pred cChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcC
Q 010811 240 EKHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKD 319 (500)
Q Consensus 240 ~~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~ 319 (500)
.+++|+|||++|++||++|+.++||||+||+|+||++|||||+++||++||||++||++++||||||+|+||+++|+++|
T Consensus 68 ~~~~e~qYldll~~IL~~G~~~~dRTGtgT~sifG~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~Gstni~~L~e~g 147 (355)
T 1hw4_A 68 PPHGELQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKG 147 (355)
T ss_dssp CCCTHHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHcCCCcCCCCCCceecccceeEEEeCCcCCcccccccccccccHHHHHHHHhCCCcHHHHHHcC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcc
Q 010811 320 IHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPS 399 (500)
Q Consensus 320 ~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~ 399 (500)
++|||+|++++|++++|++++++||+|++||+|||+||+.|.+++.+|+|+++|||++||++||+||+|||+|+++|||+
T Consensus 148 v~IWd~w~~~~~l~~~g~~~~e~GdLGpvYG~QwR~~~~~y~~~~~~y~g~~iDQi~~VI~~Lk~nP~SRR~IvsaWNp~ 227 (355)
T 1hw4_A 148 VKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPR 227 (355)
T ss_dssp C----------------------CBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEEECCGG
T ss_pred CcccCCcchHHHhhccCcccccCCcccCccchhhhcCcccccCCccccCCCChHHHHHHHHHHhcCCCCceEEEEccChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHH
Q 010811 400 DLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPL 479 (500)
Q Consensus 400 ~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~ 479 (500)
++++|+|||||.++||+|++|+|+|++||||+|+++|+||||++|++|++|||++||+++|+|+|+++|+|||+||+|++
T Consensus 228 dl~~maLpPCh~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle~GefvhtigdaHIY~nHie~v 307 (355)
T 1hw4_A 228 DLPLMALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPL 307 (355)
T ss_dssp GTTTSSSCCCSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHH
T ss_pred hhhcCCCCCceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEEEeEeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCeEEecCC
Q 010811 480 EEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 480 ~~~l~r~p~~~P~l~~~~~ 498 (500)
++||+|+|+++|+|+||++
T Consensus 308 keqL~ReP~~~P~L~in~~ 326 (355)
T 1hw4_A 308 KIQLQREPRPFPKLRILRK 326 (355)
T ss_dssp HHHTTSCCCCCCEEEECSC
T ss_pred HHHHhcCCCCCCeeEeCCC
Confidence 9999999999999999975
No 11
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=100.00 E-value=7.8e-91 Score=696.69 Aligned_cols=250 Identities=49% Similarity=0.855 Sum_probs=243.4
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCc
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~ 320 (500)
++.|+|||+||++||++|+.++||||+||+|+||++|||||++|||++||||++||++++||||||+|+||+++|+++||
T Consensus 6 ~~~~~qYldl~~~Il~~G~~~~dRTgtgT~s~fg~q~rfdL~~gfPllTTKkv~~k~ii~ELLWfl~G~tNi~~L~~~gv 85 (321)
T 4dq1_A 6 NSFDAAYHSLCEEVLEIGNTRNDRTNTGTISKFGHQLRFDLSKGFPLLTTKKVSFKLVATELLWFIKGDTNIQYLLKYNN 85 (321)
T ss_dssp CHHHHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHTTTC
T ss_pred chHHHHHHHHHHHHHHcCcCCCCCCCCCeEEEeeeeEEecCCCCCceeeeecccHHHHHHHHHHHHhCCCcHHHHHHcCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcchhhhhhhcCCCC--------------------------------------CCCCCCCCccccccccccccccc
Q 010811 321 HIWDGNASREYLDSVGLTD--------------------------------------REEGDLGPVYGFQWRHFGARYTN 362 (500)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~--------------------------------------~~~g~lG~~YG~~wR~~~~~~~~ 362 (500)
+|||+||+++|+++.|+.. +++||+|++||+|||+|++
T Consensus 86 ~IWd~wa~~~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~f~~~il~d~~f~~~~GdLGpvYG~QwR~~~~---- 161 (321)
T 4dq1_A 86 NIWNEWAFENYIKSDEYNGPDMTDFGHRALSDPEFNEQYKEQMKQFKQRILEDDTFAKQFGDLGNVYGKQWRDWVD---- 161 (321)
T ss_dssp CTTHHHHHHHHTTSTTCCSSCCTTCSHHHHHCTTHHHHHHHHHHHHHHHHHHCHHHHHHHSBCCCCHHHHHHCEEC----
T ss_pred cccCccchhhhhccccccCccccccccccccchhHHHHHHHHHHHhhhhhcccccccccCCcCccchhhHheeCcC----
Confidence 9999999999999988753 5689999999999999985
Q ss_pred cccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHH
Q 010811 363 MHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA 442 (500)
Q Consensus 363 ~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~ 442 (500)
|+|+++|||++||++||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+|++||||+|+++|+|||++
T Consensus 162 ----~~g~~iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~maLpPCh~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNia 237 (321)
T 4dq1_A 162 ----KDGNHFDQLKTVIEQIKHNPDSRRHIVSAWNPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIA 237 (321)
T ss_dssp ----TTCCEECHHHHHHHHHHHCTTCSCCEEECCCGGGTTTSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHH
T ss_pred ----CCCCchhHHHHHHHHHhcCCCCceeEEEecChHHhccCCCCCCceEEEEEEECCEEEEEEEchhhhHHHHhhccHH
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 443 SYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 443 ~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
+|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+|||+
T Consensus 238 syalL~~miAq~~Gl~~G~fih~~gdaHIY~nH~e~~~~qL~R~p~~~P~l~in~~ 293 (321)
T 4dq1_A 238 SYALLTHLIAKECGLEVGEFVHTFGDAHIYSNHIDAIQTQLARESFNPPTLKINSD 293 (321)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEEEEETTSHHHHHHHHHSCCCCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCcceEEEEEEEEEEEeHHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999974
No 12
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=100.00 E-value=2.9e-89 Score=688.74 Aligned_cols=255 Identities=35% Similarity=0.653 Sum_probs=239.3
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCc
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~ 320 (500)
.+.|+|||+||++||++|+.++||||+||+|+||++|||||++|||++||||++||++++||||||+|+||+++|+++||
T Consensus 2 ~~~m~qYldl~~~Il~~G~~~~dRTGtgT~s~fg~q~rfdL~~gFPllTTKkv~~ksii~ELLWfl~G~tn~~~L~e~gv 81 (327)
T 3v8h_A 2 PGSMKQYLDLVRTILDTGTWQSNRTGIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGC 81 (327)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC--CCCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHTTCCBHHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHcCCccCCCCCCceEEecCceEEEecccCCcccccccccHHHHHHHHHHHHhCCccHHHHHHcCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcc--hhhhhhhcCCCCCCCCCCCCccccccccccccccccccC-------------------CCCC--------C
Q 010811 321 HIWDGNA--SREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHAD-------------------YSGQ--------G 371 (500)
Q Consensus 321 ~iWd~~~--~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~-------------------y~~~--------~ 371 (500)
+|||+|+ +++||++. . .+++|||||+||+|||+|++ |.+++++ ++|+ +
T Consensus 82 ~IWd~wa~~~~~~ld~~-~-~~e~GdLGpvYG~QWR~~~a-y~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~~~ 158 (327)
T 3v8h_A 82 KVWDANANENAQWLANP-Y-RRGADDLGDVYGVQWRRWPG-YKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKA 158 (327)
T ss_dssp CTTHHHHHTCHHHHTCT-T-CCSTTBCCSCTHHHHHHEEE-EEEEETTCHHHHHHHHHTTCEEEEEEEETTEEEEEEEEE
T ss_pred cccccchhhhhhhhccc-c-cccCCCCCcchhhHhhhccc-cccccccchhhhhhhhcccceeccccCCCcccccccccc
Confidence 9999999 78999873 2 25789999999999999997 6666553 4567 8
Q ss_pred chHHHHHHHHHhcCCCCcceEEEeeCcccccCCCCCCcceeeEE--EEECCEEEEEEEeecccccccccccHHHHHHHHH
Q 010811 372 FDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQF--YMANGELSCQMYQRSADMGLGVPFNIASYALLTC 449 (500)
Q Consensus 372 ~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf--~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~ 449 (500)
+|||++||++||+||+|||+|+++|||.++++|+|||||.++|| +|++|+|+|++||||+|+++|+|||+++|++|++
T Consensus 159 iDQi~~vI~~Lk~nP~SRR~ivsaWnp~dl~~malpPCh~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~ 238 (327)
T 3v8h_A 159 IDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLT 238 (327)
T ss_dssp ECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCccceEEEecChhHhccCCCCCCceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 450 MIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 450 ~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+||++
T Consensus 239 miA~~~gl~~G~~~h~~gdaHIY~nHie~~~eqL~R~p~~~P~l~i~~~ 287 (327)
T 3v8h_A 239 LVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAER 287 (327)
T ss_dssp HHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCEEEECTT
T ss_pred HHHHHhCCeeeEEEEEEeeeEeehhHHHHHHHHhCCCCCCCCEEEECCC
Confidence 9999999999999999999999999999999999999999999999875
No 13
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=100.00 E-value=4.7e-88 Score=682.41 Aligned_cols=247 Identities=52% Similarity=0.913 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|+|||+||++||++|+.++||||+||+|+||++|||||++|||+|||||++||++++||||||+|+||++.|++.||+||
T Consensus 2 e~qYldLl~~IL~~G~~k~dRTGtgT~SvFG~q~rfdL~~gFPlLTTKkv~~Ksii~ELLWFl~G~Tn~~~L~e~gv~IW 81 (315)
T 3uwl_A 2 EEAYLALGKKILEEGHFKEDRTGTGTYSLFGYQMRFDLAKGFPLLTTKRVPFGLIKSELLWFLKGDTNIRYLLERNNHIW 81 (315)
T ss_dssp HHHHHHHHHHHHHHCEEEECTTSCEEEEEEEEEEEEEGGGCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHHTTCCTT
T ss_pred hHHHHHHHHHHHHcCCCcCCCCCCceEEEeeeeEEEeccCCCceeeeccchHHHHHHHHHHHHcCCccHHHHHHcCCCcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhcCCCCC--------------------------------------CCCCCCCcccccccccccccccccc
Q 010811 324 DGNASREYLDSVGLTDR--------------------------------------EEGDLGPVYGFQWRHFGARYTNMHA 365 (500)
Q Consensus 324 d~~~~~~~~~~~~~~~~--------------------------------------~~g~lG~~YG~~wR~~~~~~~~~~~ 365 (500)
|+||.++|+++.++... +.||+||+||+|||+|++
T Consensus 82 d~wa~~~~l~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~f~~~i~~d~~~~~~~GdlGpvYG~QwR~~~~------- 154 (315)
T 3uwl_A 82 DEWAFERYVKSADYQGPDMTDFGHRVLQDPAFAEQYKEEHQKFCDAILNDAEFAEKYGELGNIYGAQWRHWET------- 154 (315)
T ss_dssp CHHHHHHHHHSSSCCC---------------------CHHHHHHHHHHHCHHHHHHHSBCCSSHHHHHHCEEC-------
T ss_pred cccchhhhhhcccccCcccccccceeeccchhhhhhhhHHHHhhhhhccccccccccCcccccCccccccccC-------
Confidence 99999999988765210 128999999999999975
Q ss_pred CCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHH
Q 010811 366 DYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYA 445 (500)
Q Consensus 366 ~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~ 445 (500)
++++++|||++||++||+||+|||+|+++|||.++++|++||||.++||+|++|+|+|++||||+|+++|+|||+++|+
T Consensus 155 -~~g~~iDQi~~vi~~Lk~nP~sRR~i~s~Wnp~~~~~~~lpPCh~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasya 233 (315)
T 3uwl_A 155 -KDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPSMALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYA 233 (315)
T ss_dssp -TTSCEECHHHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHH
T ss_pred -CCCCcchHHHHHHHHhccCCCCCeEEEEecCHHHHhcCCccccceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHH
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 446 LLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 446 ~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
+|++|||++||+++|+|+|+++|+|||+||+|+|++||+|+|+++|+|+|||+
T Consensus 234 lL~~miA~~~gl~~G~~~h~~gd~HIY~nh~e~~~~ql~R~p~~~P~L~in~~ 286 (315)
T 3uwl_A 234 LLTHLIAHETGLEVGEFVHTLGDAHLYQNHVEQMQEQLSREVRSFPTLVLNPD 286 (315)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECTT
T ss_pred HHHHHHHHHhCCccceEEEEeeeeEeeHhHHHHHHHHhCCCCCCCCeEEECCC
Confidence 99999999999999999999999999999999999999999999999999875
No 14
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=100.00 E-value=1.7e-87 Score=659.84 Aligned_cols=235 Identities=51% Similarity=0.909 Sum_probs=228.9
Q ss_pred hHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCccc
Q 010811 243 EEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHI 322 (500)
Q Consensus 243 ~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~i 322 (500)
.|+||+++|++||++|+.++||||+||+|+||++|||||++|||++||||++||++++||+||++|+||+++|+++|++|
T Consensus 1 ~m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~i 80 (264)
T 3qj7_A 1 SMTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTI 80 (264)
T ss_dssp -CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCT
T ss_pred ChHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccccc
Q 010811 323 WDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLK 402 (500)
Q Consensus 323 Wd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~ 402 (500)
||+|+ +++||+|++||+|||+|++ |+++++|||++||++||+||+|||+|+++|||++++
T Consensus 81 Wd~wa------------~e~GdlG~vYG~qwr~~~~--------~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~ 140 (264)
T 3qj7_A 81 WDEWA------------SDTGELGPIYGVQWRSWPA--------PSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIE 140 (264)
T ss_dssp TGGGC------------CTTSBCCSCHHHHHHHEEC--------TTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGG
T ss_pred chhhc------------ccCCCCccccchhheecCC--------CCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhc
Confidence 99997 6789999999999999985 568899999999999999999999999999999999
Q ss_pred CCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHH
Q 010811 403 LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQ 482 (500)
Q Consensus 403 ~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~ 482 (500)
+|+|||||.++||+|++|+|+|++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++|
T Consensus 141 ~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~q 220 (264)
T 3qj7_A 141 RMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQ 220 (264)
T ss_dssp GSSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHH
T ss_pred cCCCCCceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCeEEecCC
Q 010811 483 LQKLPKPFPVSIIIDI 498 (500)
Q Consensus 483 l~r~p~~~P~l~~~~~ 498 (500)
|+|+|+++|+|+| |+
T Consensus 221 L~R~p~~~P~l~i-~~ 235 (264)
T 3qj7_A 221 LSREPRPYPKLLL-AD 235 (264)
T ss_dssp HTSCCCCCCEEEE-EC
T ss_pred hcCCCCCCCEEEe-CC
Confidence 9999999999999 53
No 15
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=100.00 E-value=1e-84 Score=643.65 Aligned_cols=235 Identities=53% Similarity=0.963 Sum_probs=228.7
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCcccc
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDIHIW 323 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~~iW 323 (500)
|+||+++|++||++|+.++||||+||+|+||++|||||+++||++||||++||++++|||||++|+||+++|+++|++||
T Consensus 1 ~~~Yl~l~~~Il~~G~~~~drtG~~T~s~fg~~~r~dl~~~fPllTtkk~~~ks~i~ELlWfl~G~tn~~~l~~~gv~iW 80 (264)
T 2g8o_A 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHcCcCccCCCCCeEEEEeeeEEEeecCCCCceeeccccchhhhHHHHHHHHcCCCcHHHHHHcCCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCcccccC
Q 010811 324 DGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSDLKL 403 (500)
Q Consensus 324 d~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~~~~ 403 (500)
|+|+ +++|++|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||.++++
T Consensus 81 d~~~------------~~~G~lG~vYG~qwr~~~~~--------~g~~iDQi~~vI~~Lk~nP~sRR~i~s~wnp~dl~~ 140 (264)
T 2g8o_A 81 DEWA------------DENGDLGPVYGKQWRAWPTP--------DGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDK 140 (264)
T ss_dssp GGGC------------CTTSBCCSCHHHHHHHEEET--------TTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGG
T ss_pred hhcc------------CCCCCcccchhHHHhhccCC--------CCCchHHHHHHHHHHhcCCCCceEEEEecChhHhhc
Confidence 9998 46899999999999999853 466799999999999999999999999999999999
Q ss_pred CCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHHHHH
Q 010811 404 MALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQL 483 (500)
Q Consensus 404 ~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l 483 (500)
|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||
T Consensus 141 m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~~~v~~qL 220 (264)
T 2g8o_A 141 MALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQL 220 (264)
T ss_dssp SSSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCcceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCeeeEEEEEEeeeEeccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCeEEecCC
Q 010811 484 QKLPKPFPVSIIIDI 498 (500)
Q Consensus 484 ~r~p~~~P~l~~~~~ 498 (500)
+|+|+++|+|+|||+
T Consensus 221 ~r~p~~~P~l~i~~~ 235 (264)
T 2g8o_A 221 SREPRPLPKLIIKRK 235 (264)
T ss_dssp TSCCCCCCEEEECCC
T ss_pred ccCCCCCCeeecCCC
Confidence 999999999999875
No 16
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=100.00 E-value=2.1e-85 Score=652.46 Aligned_cols=238 Identities=49% Similarity=0.906 Sum_probs=232.5
Q ss_pred HHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhh------
Q 010811 244 EYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQE------ 317 (500)
Q Consensus 244 ~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~------ 317 (500)
|+||+++|++||++|+.++||||+||+|+||++|||||++|||++||||++||++++||||||+|+||+++|++
T Consensus 1 ~~qYl~l~~~Il~~G~~~~dRTG~gT~sifg~q~r~dl~~gfPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~~~~~~ 80 (286)
T 1tis_A 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred ChHHHHHHHHHHHcCCccCCCCCCceEeecceEEEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHhhhcccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEee
Q 010811 318 -KDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAW 396 (500)
Q Consensus 318 -~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w 396 (500)
+|++|||+|++++|+++ .+++|++|++||+|||+|+ ++|||++||++||+||+|||+|+++|
T Consensus 81 ~~gv~iWd~~~~~~~l~~----~~~~GdlG~vYG~qwR~~~-------------~~DQi~~vI~~Lk~nP~SRR~ivs~W 143 (286)
T 1tis_A 81 IQGKTVWDENYENQAKDL----GYHSGELGPIYGKQWRDFG-------------GVDQIIEVIDRIKKLPNDRRQIVSAW 143 (286)
T ss_dssp SSSCCTTHHHHTTTTGGG----TCCTTBCCSCHHHHHHCBT-------------TBCHHHHHHHHHHHSTTCSCCBCCCC
T ss_pred ccCCcccccccccchhhh----cccCCcchhhhHHHHhcCC-------------cchHHHHHHHHHhcCCCCccEEEEec
Confidence 89999999999999987 3678999999999999996 48999999999999999999999999
Q ss_pred CcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccch
Q 010811 397 NPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHV 476 (500)
Q Consensus 397 ~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~ 476 (500)
||.++++|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+
T Consensus 144 np~dl~~malpPCh~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~ 223 (286)
T 1tis_A 144 NPAELKYMALPPCHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHV 223 (286)
T ss_dssp CGGGGGGCSSCCSEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCC
T ss_pred ChhHhhcCCCCCceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCeeEEEEEEEeeeEeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEecCC
Q 010811 477 RPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 477 ~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
|++++||+|+|+++|+|+|||+
T Consensus 224 e~v~~qL~R~p~~~P~l~i~~~ 245 (286)
T 1tis_A 224 EQCKEILRREPKELCELVISGL 245 (286)
T ss_dssp TTTGGGSSCCCCSCCCCEECCC
T ss_pred HHHHHHHcCCCCCCCeEEECCc
Confidence 9999999999999999999986
No 17
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=100.00 E-value=3.7e-84 Score=662.35 Aligned_cols=238 Identities=54% Similarity=0.947 Sum_probs=223.1
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCc
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~ 320 (500)
.-.|+||+++|++||++|+.++||||+||+|+||++|||||++|||++||||++||++++||||||+|+||+++|+++|+
T Consensus 94 ~g~~~~Yl~l~~~Il~~G~~~~dRTG~~T~s~fg~~~rfdl~~gfPllTtkk~~~k~~i~EllWfl~G~tn~~~L~~~gv 173 (360)
T 3ix6_A 94 IGGMRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELLWFLKGDTNIAYLKENGV 173 (360)
T ss_dssp ---CHHHHHHHHHHHHHCEEECC----CEEEEEEEEEEEEGGGCCCCC---CCCHHHHHHHHHHHHHCCCBTHHHHHTTC
T ss_pred CchHHHHHHHHHHHHHhCcCCCCCCCccEEEeccceeEEecCCCCcccccccccHHHHHHHHHHHHcCCCcHHHHHHhCC
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 010811 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (500)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (500)
+|||+|+ +++||+|++||+|||+|++. +|+++|||++||++||+||+|||+|+++|||++
T Consensus 174 ~iWd~wa------------~~~g~lG~vYG~qwR~~~~~--------~g~~iDQi~~vI~~Lk~nP~SRR~ivs~wnp~d 233 (360)
T 3ix6_A 174 TIWDEWA------------DENGDLGPVYGYQWRSWPAP--------DGRHIDQIANLLKMLHTNPQSRRLIVSAWNPAL 233 (360)
T ss_dssp CTTGGGC------------CTTSBCSSCHHHHHHHEECT--------TSCEECHHHHHHHHHHHCTTCSCCEEECCCHHH
T ss_pred Cccchhc------------ccCCCCccchhhhheeecCC--------CCCchHHHHHHHHHHhcCCCcceeEEEecChHH
Confidence 9999997 67899999999999999863 477899999999999999999999999999999
Q ss_pred ccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECcccccccchHHHH
Q 010811 401 LKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAHVYRNHVRPLE 480 (500)
Q Consensus 401 ~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~ 480 (500)
+++|+|||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|+++
T Consensus 234 l~~mal~PCh~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~ 313 (360)
T 3ix6_A 234 VDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQAR 313 (360)
T ss_dssp HTTCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHH
T ss_pred hccCCCCCCcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCcceEEEEEEeeeEEeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCeEEecCC
Q 010811 481 EQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 481 ~~l~r~p~~~P~l~~~~~ 498 (500)
+||+|+|+++|+|+|||+
T Consensus 314 ~qL~R~p~~~P~l~i~~~ 331 (360)
T 3ix6_A 314 LQLTRTPKKLPVMHINPD 331 (360)
T ss_dssp HHTTSCCCCCCEEEECTT
T ss_pred HHhcCCCCCCCEEEECCC
Confidence 999999999999999975
No 18
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00 E-value=4.3e-83 Score=634.97 Aligned_cols=237 Identities=37% Similarity=0.649 Sum_probs=228.2
Q ss_pred hhHHHHHHHHHHHHHCCccccC----------CCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHH-HHhCCC
Q 010811 242 HEEYLYLRLVQDIISDGNLKDD----------RTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLW-FISGST 310 (500)
Q Consensus 242 ~~~~~Yl~l~~~Il~~G~~~~d----------Rtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW-~l~G~~ 310 (500)
.+|+||+++|++||++|+.++| |||+||+|+||++|||| +++||++||||++||++++|||| |++|+|
T Consensus 2 ~~~~~Yl~l~~~Il~~G~~~~d~~~r~~~~~drTg~~T~s~fg~~~r~d-~~~fPllTtkk~~~k~~i~EllWifl~G~t 80 (278)
T 1bkp_A 2 QFDKQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFD-NSEVPILTTKKVAWKTAIKELLWIWQLKSN 80 (278)
T ss_dssp CHHHHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEEC-SSSCCCCSSSCCCHHHHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHHHHHcCccCCCcccccccccCCCCCceEEecceEEEEc-cccccccccccccHHhhHHHHHHHHHcCCC
Confidence 5799999999999999998876 89999999999999999 99999999999999999999999 999999
Q ss_pred ChhHhhhcCcccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcc
Q 010811 311 NAKVLQEKDIHIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRR 390 (500)
Q Consensus 311 ~~~~L~~~~~~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR 390 (500)
|+++|+++|++|||+|+ +++|++|++||+|||+|+.. ++|+++|||++||++||+||+|||
T Consensus 81 n~~~L~~~gv~iWd~w~------------~~~gdlG~vYG~qwr~~~~~-------~~g~~iDQi~~vI~~Lk~nP~SRR 141 (278)
T 1bkp_A 81 DVNDLNMMGVHIWDQWK------------QEDGTIGHAYGFQLGKKNRS-------LNGEKVDQVDYLLHQLKNNPSSRR 141 (278)
T ss_dssp BHHHHHTTTCCTTGGGC------------CTTSBCBSCTHHHHHCCCEE-------ETTEEECHHHHHHHHHHHSTTCSC
T ss_pred cHHHHHHhCCCcccccc------------ccCCcccccccHhhhhccCC-------CCCcchHHHHHHHHHHhcCCCCCc
Confidence 99999999999999997 57899999999999999632 346679999999999999999999
Q ss_pred eEEEeeCcccccCCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHHHHHHHHHHHHhhcCCcceEEEEEECccc
Q 010811 391 IVLSAWNPSDLKLMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCDLAPGDFIHVIGDAH 470 (500)
Q Consensus 391 ~i~~~w~p~~~~~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~H 470 (500)
+|+++|||.++.+|++||||.++||+|++|+|+|++||||||+++|+|||+++|++|++|||++||+++|+|+|+++|+|
T Consensus 142 ~ivs~wnp~dl~~m~lpPC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~~G~~~h~~gdaH 221 (278)
T 1bkp_A 142 HITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCH 221 (278)
T ss_dssp CEEESCCTTTGGGBSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEE
T ss_pred EEEEecChhhhhccCCCCeeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCeeEEEEEEEEeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchHHHHHHHhcCCCCCCeEEecCC
Q 010811 471 VYRNHVRPLEEQLQKLPKPFPVSIIIDI 498 (500)
Q Consensus 471 IY~~h~~~~~~~l~r~p~~~P~l~~~~~ 498 (500)
||+||+|++++||+|+|+++|+|+|||+
T Consensus 222 IY~nh~e~v~~qL~r~p~~~P~l~i~~~ 249 (278)
T 1bkp_A 222 VYTRHIDNLKIQMEREQFEAPELWINPE 249 (278)
T ss_dssp EEGGGHHHHHHHHHSCCCCCCEEEECTT
T ss_pred EcHHHHHHHHHHhcCCCCCCCEEEECCC
Confidence 9999999999999999999999999975
No 19
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=100.00 E-value=1.1e-70 Score=540.11 Aligned_cols=220 Identities=21% Similarity=0.291 Sum_probs=209.7
Q ss_pred ChhHHHHHHHHHHHHHCCccccCCCCceeeeeccceeEEeCCCCCcccccccccHHHHHHHHHHHHhCCCChhHhhhcCc
Q 010811 241 KHEEYLYLRLVQDIISDGNLKDDRTGTGTLSKFGCQMRYNLRTTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKDI 320 (500)
Q Consensus 241 ~~~~~~Yl~l~~~Il~~G~~~~dRtg~~t~~i~g~~~~~dl~~~fPllT~kk~~~k~~~~EllW~l~G~~~~~~L~~~~~ 320 (500)
.+.+++|++++++|+++|. ++||||++|+++||+++|||. |++ +||++||++++||+||++|+||+++|+++++
T Consensus 6 ~t~~~~y~~l~~~Il~~G~-~~drtg~~t~s~~g~~~r~~~----P~~-~kk~~~k~~i~EllWfl~G~tn~~~l~~~~~ 79 (246)
T 1b5e_A 6 MTVEEIRLHLGLALKEKDF-VVDKTGVKTIEIIGASFVADE----PFI-FGALNDEYIQRELEWYKSKSLFVKDIPGETP 79 (246)
T ss_dssp BCHHHHHHHHHHHHHTTCC-EECTTSCEEEEEEEEEEECCS----SCS-SSCCCHHHHHHHHHHHHHTCSBGGGSSSSCC
T ss_pred CCHHHHHHHHHHHHHHcCC-CcCCCCCceEEECcEEEEEcC----ccc-cccccHHHHHHHHHHHhhCCCcHHHHHhhcc
Confidence 4789999999999999995 999999999999999999993 999 8999999999999999999999999999999
Q ss_pred ccccCcchhhhhhhcCCCCCCCCCCCCccccccccccccccccccCCCCCCchHHHHHHHHHhcCCCCcceEEEeeCccc
Q 010811 321 HIWDGNASREYLDSVGLTDREEGDLGPVYGFQWRHFGARYTNMHADYSGQGFDQLLDVINKIKNNPNDRRIVLSAWNPSD 400 (500)
Q Consensus 321 ~iWd~~~~~~~~~~~~~~~~~~g~lG~~YG~~wR~~~~~~~~~~~~y~~~~~dQl~~vi~~Lk~~p~sRR~i~~~w~p~~ 400 (500)
+|||+|+ +++|++|++|| ||+|+. +++|||++||++||+||+|||+|+++|||.+
T Consensus 80 ~iwd~~~------------~~~g~lg~~YG--wR~~~~-----------~~~DQi~~vI~~Lk~nP~SRR~i~s~wnp~~ 134 (246)
T 1b5e_A 80 KIWQQVA------------SSKGEINSNYG--WAIWSE-----------DNYAQYDMCLAELGQNPDSRRGIMIYTRPSM 134 (246)
T ss_dssp HHHHHHS------------CTTSBCSCCHH--HHHHCG-----------GGTCHHHHHHHHHHHCTTCSCCEEECCCTTH
T ss_pred hhhhhhc------------ccCCCCCCCCC--eeECCC-----------CCchHHHHHHHHHhcCCCCCeEEEEecCchh
Confidence 9999986 46899999999 999973 3589999999999999999999999999998
Q ss_pred cc-----CCCCCCcceeeEEEEECCEEEEEEEeecccccccccccHH-----HHHHHHHHHHhh--cCCcceEEEEEECc
Q 010811 401 LK-----LMALPPCHMFAQFYMANGELSCQMYQRSADMGLGVPFNIA-----SYALLTCMIAHV--CDLAPGDFIHVIGD 468 (500)
Q Consensus 401 ~~-----~~~~~PC~~~~qf~v~~gkL~~~~~~RS~D~~~g~p~Ni~-----~~~~L~~~iA~~--~g~~~G~~~~~~~~ 468 (500)
+. +|+|||||.++||+|++|+|+|++||||||+++|+|||++ +|++|++|||++ ||+++|+|+|+++|
T Consensus 135 ~~d~~~~~m~l~PC~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~~G~~~h~~gd 214 (246)
T 1b5e_A 135 QFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGS 214 (246)
T ss_dssp HHHTTGGGCCCCCCEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEE
T ss_pred hcccccccccCCceeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCceeEEEEEEEe
Confidence 64 6999999999999999999999999999999999999999 999999999999 99999999999999
Q ss_pred ccccccchHHHHHHHhcCCCCCC
Q 010811 469 AHVYRNHVRPLEEQLQKLPKPFP 491 (500)
Q Consensus 469 ~HIY~~h~~~~~~~l~r~p~~~P 491 (500)
+|||+||+|++++||+|+|.+.+
T Consensus 215 aHIY~nh~e~~~~~L~r~~~~~~ 237 (246)
T 1b5e_A 215 LHVYSRHFYLVDHWWKTGETHIS 237 (246)
T ss_dssp EEEEGGGHHHHHHHHHHCCSCCC
T ss_pred EEEcHHHHHHHHHHHhhCCcccc
Confidence 99999999999999999998765
No 20
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=100.00 E-value=1.8e-43 Score=346.64 Aligned_cols=186 Identities=37% Similarity=0.642 Sum_probs=157.2
Q ss_pred cCCCCcceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcc------cCCCCCCcEEEEccccccccCCCCCCCCCC
Q 010811 16 TQPNPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQI------TSDAGKRNAVIMGRKTWESIPLEHRPLPGR 89 (500)
Q Consensus 16 ~~~~~mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~------~~~~~~~~~vIMGRkTyeslp~~~~pl~~R 89 (500)
...+.||+|++|+|+|.||+||.+|+|||++|+||+||+++|++ +++|++.++||||||||||||.+++|||+|
T Consensus 21 ~~~~~mr~i~lIvA~s~ng~IG~~g~LPW~lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~~rPLp~R 100 (240)
T 3rg9_A 21 ISRPPLRPFSVVVASDEKGGIGDGGTIPWEIPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPKFRPLSNR 100 (240)
T ss_dssp --CCCCCCEEEEEEEETTCEEESSSSCSCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGGGSSCTTS
T ss_pred ccCCCCCeEEEEEEECCCCcEECCCCcCCCCHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhhccCCCCC
Confidence 34678999999999999999999999999999999999999987 356777799999999999999766899999
Q ss_pred cEEEEcCCCCCC-C----C--------CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCC---CcCE
Q 010811 90 LNVVLTRSGSFD-I----A--------TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAP---ECDA 153 (500)
Q Consensus 90 ~nIVlSrt~~~~-~----~--------~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~---lvDe 153 (500)
.||||||+.... + + ..+++.+++|+++|++.+++.+...+.++||||||++||+++|+++ +||+
T Consensus 101 ~nIVlSr~~~~~~~~~~~~~~~~~~~~~~~~v~v~~sl~eal~~l~~~~~~~~~~~I~VIGGa~IY~~~L~~~~~~l~D~ 180 (240)
T 3rg9_A 101 LNVVLSRSATKEQLLAGIPDPIKRAEAANDVVAVNGGLEDALRMLVSKEHTSSIETVFCIGGGTIYKQALCAPCVNVLQA 180 (240)
T ss_dssp EEEEECSSCCHHHHHTTCSSHHHHHHHGGGEEEESSCHHHHHHHTTSHHHHHHEEEEEECCCHHHHHHHTSTTGGGGEEE
T ss_pred eEEEEccCcccccccccccccccccccCCCCEEEECCHHHHHHHHhccccccCCCeEEEECCHHHHHHHHhcCccccCCE
Confidence 999999997431 0 0 1356889999999999997531001146899999999999999888 9999
Q ss_pred EEEEEEC-ccccCcccC--CCCCCCC-----cEEeeeecC---ceecCccEEEEEEEEc
Q 010811 154 IHITEIE-TRIECDTFI--PSIDSSV-----FQPWYSSFP---IVENNIRYCLSTYVRV 201 (500)
Q Consensus 154 i~lT~I~-~~~~Gd~fF--P~~~~~~-----~~l~~~~~~---~~e~~~~~~f~~Y~r~ 201 (500)
++||+|+ ..++||+|| |+++.+. |++++.+.. .+++++.|+|++|+|+
T Consensus 181 l~lT~I~p~~~egDtfFp~P~~d~~~~~~~~w~~~~~~~~~~~~~~~~~~y~f~~y~r~ 239 (240)
T 3rg9_A 181 IHRTVVRPASNSCSVFFDIPAAGTKTPEGLELVRESITDERVSTGAGGKKYQFEKLVPR 239 (240)
T ss_dssp EEEEEEESCCSSCCEECCCCCTTCCCTTSCCEEEEEECCCEECSSTTCCEEEEEEEEEC
T ss_pred EEEEEEcCCCcCcceecCCCCCChhhcccCceEEEEeeccccccCCCCCceEEEEEEeC
Confidence 9999999 889999999 9998877 999875432 2358899999999996
No 21
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=2.7e-42 Score=331.89 Aligned_cols=181 Identities=39% Similarity=0.649 Sum_probs=154.8
Q ss_pred CCcceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhccc---CCCCCCcEEEEccccccccCCCCCCCCCCcEEEEc
Q 010811 19 NPKRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQIT---SDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLT 95 (500)
Q Consensus 19 ~~mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~---~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlS 95 (500)
+.|++|++|+|+|+||+||.+|+|||++|+||+||+++|+++ ++|++.++|||||||||++|.++|||++|+|||||
T Consensus 2 ~~~~~i~livA~s~dg~IG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~~~Pl~~r~niVlS 81 (206)
T 3nzb_X 2 NQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVIT 81 (206)
T ss_dssp CCCSCEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTSEEEEEC
T ss_pred CCCCEEEEEEEECCCCcEeCCCCcCCCChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhcccCCCCCeEEEEc
Confidence 568999999999999999999999999999999999999853 23455699999999999998656899999999999
Q ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCC---CCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCC-C
Q 010811 96 RSGSFDIATVENVVICGSIGSALELLAASPYCL---SIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIP-S 171 (500)
Q Consensus 96 rt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~---~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP-~ 171 (500)
|+... ...+++.+++|+++|++.+++..... ++++||||||++||+++|++++||+++||+||..++||+||| .
T Consensus 82 r~~~~--~~~~~~~v~~sl~eal~~l~~~~~~~~~~~~~~i~ViGG~~iy~~~L~~~l~Del~lT~i~~~~~gd~~FP~~ 159 (206)
T 3nzb_X 82 RNESL--DLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLK 159 (206)
T ss_dssp SSCCC--CCCSSCEEESSHHHHHHHHHHHSCSSSSSEEEEEEECCCHHHHHHHHHSTTEEEEEEEEECSCCCCSEECSSC
T ss_pred cCCCC--CCCCCEEEECCHHHHHHHHhccccccccCCCCcEEEECcHHHHHHHhhCCCCCEEEEEEcccccCCCccCCcc
Confidence 99754 12356889999999999998641001 247899999999999999999999999999999999999999 8
Q ss_pred CCCC----CcEEeeeec------------CceecCccEEEEEEEEc
Q 010811 172 IDSS----VFQPWYSSF------------PIVENNIRYCLSTYVRV 201 (500)
Q Consensus 172 ~~~~----~~~l~~~~~------------~~~e~~~~~~f~~Y~r~ 201 (500)
++.. .|++++.+. .++++++.|.|++|+|+
T Consensus 160 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~y~f~~y~r~ 205 (206)
T 3nzb_X 160 FRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRD 205 (206)
T ss_dssp TTSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECC
T ss_pred cCcccccCCcEEEEEeeccccccccccccccccCCeeEEEEEEEEc
Confidence 8753 699886432 35688999999999985
No 22
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=2.6e-41 Score=314.39 Aligned_cols=158 Identities=36% Similarity=0.637 Sum_probs=144.4
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 5 ~i~li~A~s~dg~Ig~~g~lpW~~~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 72 (165)
T 3s9u_A 5 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTM-------GHPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGY-- 72 (165)
T ss_dssp EEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHhhc-------CCEEEEcchHHhhhh---hccCCCeEEEECCCCcc--
Confidence 699999999999999999999999999999999998 899999999999997 69999999999999854
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|+++|++.+++. ++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|++++.
T Consensus 73 -~~~~v~v~~~~~~al~~l~~~------~~i~viGG~~iy~~~l--~l~Del~lT~ip~~~~Gd~~Fp~~~~~~~~l~~~ 143 (165)
T 3s9u_A 73 -HVEGCEVAHSVEEVFELCKNE------EEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFV 143 (165)
T ss_dssp -CCTTCEEESSHHHHHHHTTTC------SEEEECCCHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEE
T ss_pred -CCCCEEEECCHHHHHHHhhcC------CCEEEECCHHHHHHHH--hhCCEEEEEEccccccCCCcCCCCChHHCEEEEE
Confidence 346788889999999998764 6999999999999999 8999999999999999999999998888999976
Q ss_pred ecC--ceecCccEEEEEEEEc
Q 010811 183 SFP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (500)
+.. .+++++.|+|++|+|+
T Consensus 144 ~~~~~~~~~~~~~~f~~y~r~ 164 (165)
T 3s9u_A 144 EKGLTDEKNPYTYYYHVYEKQ 164 (165)
T ss_dssp EECCCSSSSCSCEEEEEEEEC
T ss_pred EeccccCCCCceEEEEEEEEC
Confidence 543 4567889999999996
No 23
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=100.00 E-value=3.9e-41 Score=316.33 Aligned_cols=160 Identities=31% Similarity=0.540 Sum_probs=143.8
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|++|+|+|+||+||++|+|||++|+|+++|+++|+ +++||||||||||+| +|||+|+||||||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~lp~Dl~~Fk~~T~-------g~~vIMGRkTyesi~---~plp~R~niVlSr~~~~-- 69 (178)
T 3tq8_A 2 IITLIAAMDKNRLIGRNNELPWHLPADLAHFKSITL-------GKPIVMGRRTFDSIG---KPLPHRRNIVITQQKNL-- 69 (178)
T ss_dssp EEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCcCHHHHHHHHHhhc-------CCEEEEechHHhhhh---hccCCCeEEEEcCCCCc--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999854
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|+++|++.+++ .++||||||++||+++| ++||+++||+||..++||+|||.++...|++++.
T Consensus 70 -~~~~v~v~~sl~eal~~l~~------~~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~w~l~~~ 140 (178)
T 3tq8_A 70 -IIEGCDIFYSLDDALSALTK------EPEVIIIGGARIFKEAL--PKADKMILTIINHSFEGDVYFPEWNDKEWKITSQ 140 (178)
T ss_dssp -CCTTSEEESSHHHHHHHTTT------CSEEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCTTSEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHHHHH--HhCCEEEEEEccccccccCcCCCCChHHCEEEEE
Confidence 34678888999999999875 36999999999999999 5999999999999999999999998888999876
Q ss_pred ecC--ceecCccEEEEEEEEccc
Q 010811 183 SFP--IVENNIRYCLSTYVRVRS 203 (500)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~~~ 203 (500)
+.. ++++++.|+|++|+|+.+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~~~ 163 (178)
T 3tq8_A 141 IKHERDEKNPYPFQFLELRRLEN 163 (178)
T ss_dssp EEECCC--CCSCEEEEEEEECCC
T ss_pred EeccccccCCccEEEEEEEECCc
Confidence 542 356788999999999754
No 24
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=2.3e-41 Score=313.80 Aligned_cols=158 Identities=34% Similarity=0.585 Sum_probs=143.3
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
++++|+|+|+||+||.+|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+|||+||+...
T Consensus 2 ~i~li~A~s~dg~IG~~g~lpW~~~~D~~~Fk~~t~-------g~~vIMGRkTyesi~---~plp~r~~iVlSr~~~~-- 69 (162)
T 3ia4_A 2 IVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATL-------GKPIVMGRNTFESIG---RPLPGRLNIVLSRQTDY-- 69 (162)
T ss_dssp EEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECCCTTC--
T ss_pred EEEEEEEECCCCcEECCCCcCCCCHhHHHHHHHHhc-------CcEEEEEchHHhhhh---hhcCCCeEEEEcCCCCC--
Confidence 599999999999999999999999999999999998 799999999999997 69999999999999854
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|+++|++.+++ .++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|++++.
T Consensus 70 -~~~~~~v~~s~~~al~~l~~------~~~i~viGG~~iy~~~l--~l~Del~lT~i~~~~~gd~~Fp~~~~~~w~~~~~ 140 (162)
T 3ia4_A 70 -QPEGVTVVATLEDAVVAAGD------VEELMIIGGATIYNQCL--AAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEH 140 (162)
T ss_dssp -CCTTSEEESSHHHHHHHHTT------CSEEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhhC------CCCEEEECCHHHHHHHH--HhCCEEEEEEccccccccccCCCCChHHCEEEEE
Confidence 34677889999999999875 36999999999999999 6999999999999999999999998888999876
Q ss_pred ecC--ceecCccEEEEEEEEc
Q 010811 183 SFP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (500)
+.. ++++++.|+|++|+|+
T Consensus 141 ~~~~~~~~~~~~~~f~~y~r~ 161 (162)
T 3ia4_A 141 ESYAADDKNPHNYRFSLLERV 161 (162)
T ss_dssp EEECCBTTBCSCEEEEEEEEC
T ss_pred EeccccCCCCccEEEEEEEEC
Confidence 542 3457789999999996
No 25
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=4e-41 Score=311.18 Aligned_cols=157 Identities=34% Similarity=0.645 Sum_probs=141.7
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++||||||||||+| +|||+|+||||||+. .
T Consensus 1 mi~li~A~s~~g~IG~~g~lpW~l~~D~~~Fk~~t~-------~~~vIMGRkT~esi~---~plp~r~~iVlSr~~-~-- 67 (159)
T 3dau_A 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTL-------NKPVIMGRHTWESIG---RPLPGRKNIILSSQP-G-- 67 (159)
T ss_dssp CEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHT-------TSCEEEEHHHHHHHC---SCCTTSCEEEECSSC-C--
T ss_pred CEEEEEEECCCCeEECCCCcCcCChhHHHHHHHHhc-------CCeEEEechHHhhcc---cccCCCEEEEECCCC-C--
Confidence 389999999999999999999999999999999998 789999999999997 699999999999997 4
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|+++|++.++. .++|||+||+++|+++| ++||+++||+||..++||+|||+++.+.|++++.
T Consensus 68 -~~~~~~v~~s~~~al~~~~~------~~~i~iiGG~~iy~~~l--~~~D~l~lT~i~~~~~Gd~~Fp~~~~~~~~~~~~ 138 (159)
T 3dau_A 68 -TDDRVTWVKSVDEAIAACGD------VPEIMVIGGGRVYEQFL--PKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFS 138 (159)
T ss_dssp -SCTTSEEESSHHHHHHTTCS------CSCEEECCCHHHHHHHG--GGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEE
T ss_pred -CCCCeEEECCHHHHHHHhcC------CCCEEEECCHHHHHHHH--hhCCEEEEEEcccccCccccCCCCChHHCEEEEE
Confidence 34677889999999998753 47999999999999999 6999999999999999999999999888999876
Q ss_pred ecC--ceecCccEEEEEEEEc
Q 010811 183 SFP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (500)
+.. .+++++.|+|++|+|+
T Consensus 139 ~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 3dau_A 139 EFHDADAQNSHSYCFEILERR 159 (159)
T ss_dssp EEECCBTTBSSCEEEEEEEEC
T ss_pred EecccccCCCceEEEEEEEEC
Confidence 432 3467889999999984
No 26
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=4.6e-40 Score=312.29 Aligned_cols=162 Identities=31% Similarity=0.537 Sum_probs=146.3
Q ss_pred cceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010811 21 KRSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (500)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~ 100 (500)
||+|++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||++|. ||||+|+|||+||+...
T Consensus 22 ~r~i~~i~A~s~dG~IG~~g~lpW~~~~D~~~fk~~t~-------~~~vIMGRkTyesi~~--~plp~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 22 TKKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTL-------NHAILMGRVTFDGMGR--RLLPKRETLILTRNPEE 92 (190)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHTTT--CCCTTCEEEEECCSCCS
T ss_pred ceeEEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHhc-------CCeEEEcCcchhhcCc--cCCCCCEEEEEcCCCCC
Confidence 78899999999999999999999999999999999998 8999999999999974 79999999999999854
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCC-CCCCCcEE
Q 010811 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPS-IDSSVFQP 179 (500)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~-~~~~~~~l 179 (500)
..+++.+++|+++|++.++++ +++|||+||+++|+++| ++|||++||+||+..+||+|||. ++...|++
T Consensus 93 ---~~~~~~v~~~~~eal~~lk~~-----~~~i~ViGG~~ly~~~l--~liDel~lt~ip~~g~Gd~lFp~~~~~~~~~l 162 (190)
T 3ix9_A 93 ---KIDGVATFHDVQSVLDWYSAQ-----EKNLYIVGGKQIFQAFE--PYLDEVIVTHIHARVEGDTYFPAEFDLSLFET 162 (190)
T ss_dssp ---CCSSSEEESSHHHHHHHHHTS-----CSCEEEEECHHHHHHHG--GGCSEEEEEEESSCCCCSEECCCCCCGGGEEE
T ss_pred ---CCCCEEEECCHHHHHHHHHhC-----CCCEEEECCHHHHHHHH--hhCCEEEEEEeCcccccCCcCCCCCCccccEE
Confidence 335677889999999999875 47999999999999999 69999999999999999999999 88778999
Q ss_pred eeeecC--ceecCccEEEEEEEEc
Q 010811 180 WYSSFP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 180 ~~~~~~--~~e~~~~~~f~~Y~r~ 201 (500)
++.+.. .+++++.|+|++|+|+
T Consensus 163 v~~~~~~~~~~~~~~~~f~~y~r~ 186 (190)
T 3ix9_A 163 VSSKFYTKDEKNPYDFTIQYRKRK 186 (190)
T ss_dssp EEEEEECCBTTBCSCEEEEEEEEC
T ss_pred EEEEeccCCCcCCceEEEEEEEEe
Confidence 876543 2467788999999996
No 27
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=100.00 E-value=3.7e-40 Score=312.22 Aligned_cols=178 Identities=35% Similarity=0.618 Sum_probs=155.9
Q ss_pred cceEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCC
Q 010811 21 KRSYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGS 99 (500)
Q Consensus 21 mrki~livAvs~dG~IG~~g~lpW-~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~ 99 (500)
.|+|++++|+|+||+||.+|+||| ++|+|+++|++.|++..+|++.++|||||||||++|.++|||++|+|||+||++.
T Consensus 1 ~r~i~~i~A~s~dG~Ig~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~~~~pl~~r~~iVlSr~~~ 80 (186)
T 1kmv_A 1 VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELK 80 (186)
T ss_dssp CCCEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCS
T ss_pred CceEEEEEEECCCCCEeCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCcccCCCCCCeEEEECCCCc
Confidence 378999999999999999999999 9999999999999865567777899999999999985568999999999999975
Q ss_pred CCCCCCCCE-EEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcE
Q 010811 100 FDIATVENV-VICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQ 178 (500)
Q Consensus 100 ~~~~~~~~~-~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~ 178 (500)
. ..+++ ++++|+++|++.+++.++..++++|||+||+++|+++|++++|||++||++|..++||+|||.++...|+
T Consensus 81 ~---~~~~~~~v~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~~g~d~~Fp~~~~~~~~ 157 (186)
T 1kmv_A 81 E---PPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYK 157 (186)
T ss_dssp S---CCTTCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCE
T ss_pred c---CCCCCEEEECCHHHHHHHHhhcccccCCCeEEEEcCHHHHHHHhcCCCCCEEEEEEeCcccCCCeECCCCChhHcE
Confidence 3 23456 8889999999999875333346899999999999999999999999999999999999999998877899
Q ss_pred Eeeee-----cCceecCccEEEEEEEEc
Q 010811 179 PWYSS-----FPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 179 l~~~~-----~~~~e~~~~~~f~~Y~r~ 201 (500)
+++.. ...+++++.|+|++|+|+
T Consensus 158 l~~~~~~~~~~~~~~~~~~~~f~~y~r~ 185 (186)
T 1kmv_A 158 LLPEYPGVLSDVQEEKGIKYKFEVYEKN 185 (186)
T ss_dssp ECSCCTTCCCSCEEETTEEEEEEEEEEC
T ss_pred EEEeccccccccccCCCceEEEEEEEEC
Confidence 98652 234678899999999985
No 28
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=100.00 E-value=5.5e-40 Score=304.68 Aligned_cols=159 Identities=28% Similarity=0.486 Sum_probs=143.7
Q ss_pred EEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCC
Q 010811 25 QVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIAT 104 (500)
Q Consensus 25 ~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~~ 104 (500)
++|+|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||++|. +|||+|+|||+||++.. .
T Consensus 2 ~li~A~s~dg~IG~~g~lpW~~~~D~~~F~~~t~-------~~~viMGRkTyes~~~--~plp~r~~iVlS~~~~~---~ 69 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTV-------GKIMVVGRRTYESFPK--RPLPERTNVVLTHQEDY---Q 69 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTT-------TSEEEEEHHHHHHSSS--SSCTTSEEEEECSCTTC---C
T ss_pred EEEEEECCCCeEeCCCCCCCCcHHHHHHHHHHhc-------CCeEEEecchhhhccc--ccCCCCcEEEEcCCCCC---C
Confidence 5899999999999999999999999999999997 8999999999999973 69999999999999854 3
Q ss_pred CCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeeeec
Q 010811 105 VENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSF 184 (500)
Q Consensus 105 ~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~~ 184 (500)
.+++.+++|++++++.++++ ++++|||+||+++|+++| ++|||++||+||..++||+|||.++...|++++.+.
T Consensus 70 ~~~~~~~~~~~~~l~~lk~~----~~~~i~viGG~~l~~~~l--~l~Del~lT~i~~~~~Gd~~Fp~~~~~~~~l~~~~~ 143 (162)
T 3dfr_A 70 AQGAVVVHDVAAVFAYAKQH----LDQELVIAGGAQIFTAFK--DDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRT 143 (162)
T ss_dssp CTTSEEESSHHHHHHHHHHC----CSSCEEECCCHHHHHHTG--GGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEE
T ss_pred CCCEEEECCHHHHHHHHhcC----CCCCEEEECCHHHHHHHH--hhCCEEEEEEecccccccCcCCCCChhHcEEEEEEc
Confidence 46777779999999999986 368999999999999999 799999999999999999999999877899987654
Q ss_pred -CceecCccEEEEEEEEc
Q 010811 185 -PIVENNIRYCLSTYVRV 201 (500)
Q Consensus 185 -~~~e~~~~~~f~~Y~r~ 201 (500)
..+++++.|.|++|+|+
T Consensus 144 ~~~~~~~~~~~f~~y~r~ 161 (162)
T 3dfr_A 144 VEDTNPALTHTYEVWQKK 161 (162)
T ss_dssp ECCSSGGGCEEEEEEEEC
T ss_pred ccccCCCceEEEEEEEEC
Confidence 34567889999999985
No 29
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=9.9e-40 Score=319.52 Aligned_cols=174 Identities=33% Similarity=0.522 Sum_probs=152.0
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhcccC--------------------------------------CC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITS--------------------------------------DA 63 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW-~~~eD~~~F~~~T~~~~--------------------------------------~~ 63 (500)
++.+++|++.+|+||.+|+||| |+|+||+||+++|++++ .+
T Consensus 26 ~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~ 105 (238)
T 2bl9_A 26 TKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNAD 105 (238)
T ss_dssp SCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------
T ss_pred cEEEEEEecCCCeecCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCccccccccccccccccc
Confidence 4678889999999999999999 99999999999998431 13
Q ss_pred CCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHH
Q 010811 64 GKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILS 143 (500)
Q Consensus 64 ~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~ 143 (500)
+.+++||||||||||+|.++||||+|+||||||+.... ...+++.+++|+++|++.+++. .+++||||||++||+
T Consensus 106 ~~g~~VIMGRkTyEsi~~~~~PLp~R~nIVlSr~~~~~-~~~~~v~v~~sl~eal~~lk~~----~~~~I~ViGGa~Iy~ 180 (238)
T 2bl9_A 106 KLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKE-DVKEKVFIIDSIDDLLLLLKKL----KYYKCFIIGGAQVYR 180 (238)
T ss_dssp CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTT-TCCSSCEEESCHHHHHHHHHTC----CCSCEEEEECHHHHH
T ss_pred ccCCEEEEchhHhhhhcccccCcCCCEEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCCEEEECcHHHHH
Confidence 44799999999999998656899999999999997431 1246788889999999999875 368999999999999
Q ss_pred HHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 144 EALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 144 ~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
++|++++||+++||+||..++||+|||.++...|++++.+.+..++++.|+|++|+|+
T Consensus 181 ~~L~~glvDel~lT~ip~~~gGD~~FP~~d~~~~~lv~~~~~~~~~~~~~~f~~y~r~ 238 (238)
T 2bl9_A 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVYNSKGTTLDFLVYSKV 238 (238)
T ss_dssp HHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCEEETTEEEEEEEEEEC
T ss_pred HHhcccCCCEEEEEEeccccCCceeCCCCCchhcEEEEEEecccCCCccEEEEEEEeC
Confidence 9999999999999999999999999999987789999887767788999999999984
No 30
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=3.8e-38 Score=293.63 Aligned_cols=160 Identities=39% Similarity=0.642 Sum_probs=138.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
++++++|+|+||+||.+|+|||++|+|+++|++.|+ +++|||||||||+++.++||||+|+|||+||++..
T Consensus 5 ~i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iV~S~~~~~-- 75 (167)
T 2w3w_A 5 EVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTM-------GHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDF-- 75 (167)
T ss_dssp CCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCcCcCCCCcCccchHHHHHHHHHhc-------CCeEEEcchHhhhcCccccCCCCCeEEEEeCCCCC--
Confidence 499999999999999999999999999999999997 78999999999999854589999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cCcccCCCCCCCCcEE
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQP 179 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~---~Gd~fFP~~~~~~~~l 179 (500)
..+++.+++|+++++ .+++ ++++|||+||+++|+++|+ +|||++||++|..+ +||+|||.++.+ |++
T Consensus 76 -~~~~~~~~~~~~~~l-~l~~-----~~~~i~ViGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~~l 145 (167)
T 2w3w_A 76 -VAEGARVAGSLEAAL-AYAG-----SDPAPWVIGGAQIYLLALP--HATRCEVTEIEIDLRRDDDDALAPALDDS-WVG 145 (167)
T ss_dssp -CCTTSEEESSHHHHH-HHTT-----TCSSCEEEECHHHHHHHGG--GCSEEEEEEEECCCCCCTTSEECCCCCTT-CEE
T ss_pred -CCCCEEEECCHHHHH-Hhhc-----CCCeEEEEchHHHHHHHHH--HCCEEEEEEEEeecCCCCccEeCCCCCcc-cEE
Confidence 345778888999999 4553 3689999999999999994 99999999999999 899999998876 998
Q ss_pred eeeecCceecCccEEEEEEEEc
Q 010811 180 WYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 180 ~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
..+.....++++.|+|++|+|+
T Consensus 146 ~~~~~~~~~~~~~~~f~~y~r~ 167 (167)
T 2w3w_A 146 ETGEWLASRSGLRYRFHSYRRD 167 (167)
T ss_dssp EECCCEECTTSCEEEEEEEEC-
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 3332233456689999999974
No 31
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=1.4e-37 Score=288.81 Aligned_cols=158 Identities=35% Similarity=0.597 Sum_probs=141.8
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010811 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (500)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~ 103 (500)
+++++|+|+||+||.+|+|||++|+|++||+++|+ +++|||||||||++| ||||+|+|||+||+...
T Consensus 2 i~~~~A~s~dG~Ig~~g~l~W~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~--- 68 (164)
T 1zdr_A 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTM-------GHAIVMGRKTFEAIG---RPLPGRDNVVVTGNRSF--- 68 (164)
T ss_dssp EEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC---
T ss_pred EEEEEEEcCCCeEeCCCCcccCCHHHHHHHHHHhc-------CCEEEECCcHHhcCC---CCCCCCeEEEEcCCCCc---
Confidence 89999999999999999999999999999999997 899999999999997 79999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeeee
Q 010811 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYSS 183 (500)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~ 183 (500)
..+++.+++|++++++.+++. +++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++..
T Consensus 69 ~~~~~~~~~~~~~~l~~l~~~-----~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~~~ 141 (164)
T 1zdr_A 69 RPEGCLVLHSLEEVKQWIASR-----ADEVFIIGGAELFRATM--PIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYT 141 (164)
T ss_dssp CCTTCEEECSHHHHHHHHHTC-----CSCEEEEECHHHHHHHG--GGCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEE
T ss_pred CCCCeEEECCHHHHHHHHhcC-----CCeEEEECcHHHHHHHH--HhCCEEEEEEeccccCCcEECCCCChhHcEEEEEE
Confidence 345677888999999999863 57999999999999999 59999999999999999999999887789998765
Q ss_pred cC--ceecCccEEEEEEEEc
Q 010811 184 FP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 184 ~~--~~e~~~~~~f~~Y~r~ 201 (500)
.. .++++++|+|++|+|+
T Consensus 142 ~~~~~~~~~~~~~~~~Y~r~ 161 (164)
T 1zdr_A 142 PGGKDEKNPYEHAFIIYERK 161 (164)
T ss_dssp ECCCSSSSCSCEEEEEEEEC
T ss_pred ecccccCCCceEEEEEEEEc
Confidence 32 2346778999999996
No 32
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=7.9e-39 Score=319.35 Aligned_cols=178 Identities=30% Similarity=0.510 Sum_probs=151.9
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhcccCC----------------------------CCCCcEEEEcc
Q 010811 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSD----------------------------AGKRNAVIMGR 73 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW-~~~eD~~~F~~~T~~~~~----------------------------~~~~~~vIMGR 73 (500)
++.+|+|++.||+||.+|.||| ++|+||+||+++|+++++ ++.+++|||||
T Consensus 27 ~~~~i~a~~~n~~IG~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIMGR 106 (280)
T 1j3k_A 27 KKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGR 106 (280)
T ss_dssp GGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEEEH
T ss_pred cEEEEEEecCCceeccCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEEcc
Confidence 4678899999999999999999 999999999999974221 13368999999
Q ss_pred ccccccCCCCCCCCCCcEEEEcCCCCCCCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCE
Q 010811 74 KTWESIPLEHRPLPGRLNVVLTRSGSFDIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDA 153 (500)
Q Consensus 74 kTyeslp~~~~pl~~R~nIVlSrt~~~~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDe 153 (500)
||||++|.++||||+|+||||||++... ...+++.+++|+++|++.+++. .+++|||+||++||+++|++++||+
T Consensus 107 kTyEsip~~~~PLp~R~nIVlSr~~~~~-~~~~~v~vv~sl~eal~~lk~~----~~~~I~ViGGa~ly~~~L~~glvDe 181 (280)
T 1j3k_A 107 TNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKL----NYYKCFILGGSVVYQEFLEKKLIKK 181 (280)
T ss_dssp HHHHHSCGGGCSCTTSEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHS----CCSCEEECCCHHHHHHHHHTTCCSE
T ss_pred hHhhhhcccccCcCCCeEEEEeCCCccc-cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHhcCccCCE
Confidence 9999998556899999999999997431 1246788888999999999875 3689999999999999999999999
Q ss_pred EEEEEECccccCcccCCCCCCCCcEEeeeecCceecCccEEEEEEEEcccch
Q 010811 154 IHITEIETRIECDTFIPSIDSSVFQPWYSSFPIVENNIRYCLSTYVRVRSAA 205 (500)
Q Consensus 154 i~lT~I~~~~~Gd~fFP~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~~~~~ 205 (500)
++||+||..++||+|||.++...|++++.+....++++.|+|++|+|++..+
T Consensus 182 l~LT~Ip~~lgGD~~FP~~d~~~~~lv~~~~~~~~~g~~~~f~~Y~R~~~~~ 233 (280)
T 1j3k_A 182 IYFTRINSTYECDVFFPEINENEYQIISVSDVYTSNNTTLDFIIYKKTNNKM 233 (280)
T ss_dssp EEEEEEEEEECCSEECCCCCTTTEEEEEECCCEEETTEEEEEEEEEECCC--
T ss_pred EEEEEeccccCCceeCCCCChhhcEEEEEEeeccCCCceEEEEEEEECCccc
Confidence 9999999999999999999877899987765455678889999999986554
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=100.00 E-value=1.7e-37 Score=286.97 Aligned_cols=155 Identities=36% Similarity=0.549 Sum_probs=138.2
Q ss_pred eEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDI 102 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~ 102 (500)
++++++|+|+||+||.+|+|||++|+|+++|++.|+ +++|||||||||+++ ||||+|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~---~pl~~r~~iV~S~~~~~-- 69 (159)
T 2w9h_A 2 TLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLST-------GHTLVMGRKTFESIG---KPLPNRRNVVLTSDTSF-- 69 (159)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHHC---SCCTTSEEEEECSCTTC--
T ss_pred EEEEEEEECCCCeEcCCCccCccchHHHHHHHHHhc-------CCEEEECCChhhccc---ccCCCCEEEEEcCCCCc--
Confidence 589999999999999999999999999999999997 899999999999997 79999999999999753
Q ss_pred CCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEeee
Q 010811 103 ATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWYS 182 (500)
Q Consensus 103 ~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~~ 182 (500)
..+++.+++|++++++. +++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++.
T Consensus 70 -~~~~~~~~~~~~~~l~~---------~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~Gd~~Fp~~~~~~~~l~~~ 137 (159)
T 2w9h_A 70 -NVEGVDVIHSIEDIYQL---------PGHVFIFGGQTLFEEMI--DKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASS 137 (159)
T ss_dssp -CCTTCEEECSGGGGGGS---------CSCEEEEECHHHHHHHT--TTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEE
T ss_pred -CCCCeEEECCHHHHHhc---------CCcEEEEChHHHHHHHH--HhCCEEEEEEecccccCCeeCCCCChhHcEEEEE
Confidence 34567788899999875 26899999999999999 6999999999999999999999988778999876
Q ss_pred ecC--ceecCccEEEEEEEEc
Q 010811 183 SFP--IVENNIRYCLSTYVRV 201 (500)
Q Consensus 183 ~~~--~~e~~~~~~f~~Y~r~ 201 (500)
+.. +++++++|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~~~Y~r~ 158 (159)
T 2w9h_A 138 VEGKLDEKNTIPHTFLHLIRK 158 (159)
T ss_dssp EECCCBTTBCSCEEEEEEEEC
T ss_pred EeccccccCCccEEEEEEEEC
Confidence 542 2346778999999986
No 34
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=3.6e-37 Score=285.27 Aligned_cols=156 Identities=28% Similarity=0.503 Sum_probs=139.2
Q ss_pred eEEEEEEEeCCCeeecCCCCCC-CChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 010811 23 SYQVVVAATRDMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (500)
Q Consensus 23 ki~livAvs~dG~IG~~g~lpW-~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~ 101 (500)
++++++|+|+||+||.+|+||| ++|+|++||+++|+ +++|||||||||++| |||++|+|||+||+...
T Consensus 2 ~i~~~~A~s~dG~Ig~~g~l~W~~~~~d~~~f~~~t~-------~~~vimGRkTyes~~---~pl~~r~~iV~S~~~~~- 70 (162)
T 1vdr_A 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIA-------DDPVVLGRTTFESMR---DDLPGSAQIVMSRSERS- 70 (162)
T ss_dssp CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTS-------SSCEEEEHHHHHHTT---TSCCSSSEEEECSSCCC-
T ss_pred EEEEEEEEcCCCcEECCCCccccCChHHHHHHHHhhC-------CCEEEEcchHHhhCC---ccCCcCeEEEEcCCCcc-
Confidence 5999999999999999999999 99999999999997 899999999999997 79999999999999751
Q ss_pred CCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccccCcccCCCCCCCCcEEee
Q 010811 102 IATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRIECDTFIPSIDSSVFQPWY 181 (500)
Q Consensus 102 ~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~~Gd~fFP~~~~~~~~l~~ 181 (500)
..++++.+++|++++++.+++. ++++|||+||+++|+++| ++|||++||++|..++||+|||.++...|++++
T Consensus 71 -~~~~~~~~~~~~~~~l~~l~~~----~~~~i~viGG~~l~~~~l--~lvDel~lt~ip~~~~G~~~Fp~~~~~~~~l~~ 143 (162)
T 1vdr_A 71 -FSVDTAHRAASVEEAVDIAASL----DAETAYVIGGAAIYALFQ--PHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDA 143 (162)
T ss_dssp -CCSSSCCEESSHHHHHHHHHHT----TCSCEEEEECHHHHHHHG--GGCSEEEEEEEEEECCCSEECCCCCTTTEEEEE
T ss_pred -cCCCCEEEECCHHHHHHHHHhC----CCCcEEEECCHHHHHHHH--HhCCEEEEEEEccccccCEECCCCCchHCEEEE
Confidence 1345677778999999999875 368999999999999999 599999999999999999999998877899986
Q ss_pred eecCceecCccEEEEEEEEc
Q 010811 182 SSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 182 ~~~~~~e~~~~~~f~~Y~r~ 201 (500)
... ..+|+|++|+|+
T Consensus 144 ~~~-----~~~~~~~~Y~~~ 158 (162)
T 1vdr_A 144 ETD-----HEGFTLQEWVRS 158 (162)
T ss_dssp EEE-----CSSCEEEEEEEC
T ss_pred Eec-----CCCEEEEEEEEC
Confidence 643 127899999986
No 35
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=2.8e-37 Score=285.68 Aligned_cols=154 Identities=35% Similarity=0.664 Sum_probs=135.9
Q ss_pred EEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCCCC
Q 010811 24 YQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFDIA 103 (500)
Q Consensus 24 i~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~~~ 103 (500)
|++++|+|+||+||.+|+|||++|+|+++|++.|+ +++|||||||||++|.++||||+|+|||+||++..
T Consensus 2 i~~i~A~s~dG~Ig~~g~lpW~~~~d~~~f~~~t~-------~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~--- 71 (159)
T 1df7_A 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITM-------GHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADF--- 71 (159)
T ss_dssp EEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHT-------TSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTC---
T ss_pred EEEEEEECCCCcEeCCCCcCCCChHHHHHHHHHHC-------CCEEEEeChHHhhcccccCCCCcCEEEEEeCCCCc---
Confidence 89999999999999999999999999999999997 68999999999999855689999999999999753
Q ss_pred CCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc---cCcccCCCCCCCCcEEe
Q 010811 104 TVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI---ECDTFIPSIDSSVFQPW 180 (500)
Q Consensus 104 ~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~---~Gd~fFP~~~~~~~~l~ 180 (500)
..+++.+++|+++|++ +++|||+||+++|+++|+ +|||++||++|..+ +||+|||.++.+ | ++
T Consensus 72 ~~~~~~~~~~~~~~l~----------~~~i~viGG~~l~~~~l~--lvDel~lt~ip~~~G~~~Gd~~Fp~~~~~-~-~~ 137 (159)
T 1df7_A 72 MASGAEVVGSLEEALT----------SPETWVIGGGQVYALALP--YATRCEVTEVDIGLPREAGDALAPVLDET-W-RG 137 (159)
T ss_dssp CCTTSEEESSHHHHTT----------SSSEEECCCHHHHHHHGG--GCSEEEEEEECCCCCCCTTCEECCCCCTT-C-EE
T ss_pred CCCCEEEECCHHHHhc----------CCcEEEECcHHHHHHHHH--HCCEEEEEEEeeecCCCCccEeCCCCCcc-c-EE
Confidence 3456778889999987 258999999999999994 99999999999999 899999998876 9 87
Q ss_pred eeec-CceecCccEEEEEEEEc
Q 010811 181 YSSF-PIVENNIRYCLSTYVRV 201 (500)
Q Consensus 181 ~~~~-~~~e~~~~~~f~~Y~r~ 201 (500)
+.+. ...++++.|+|++|+|+
T Consensus 138 ~~~~~~~~~~~~~~~f~~y~r~ 159 (159)
T 1df7_A 138 ETGEWRFSRSGLRYRLYSYHRS 159 (159)
T ss_dssp EECCCEECTTSCEEEEEEEECC
T ss_pred eeccccccCCCCcEEEEEEEeC
Confidence 6543 23456689999999974
No 36
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=100.00 E-value=1.1e-36 Score=296.74 Aligned_cols=178 Identities=35% Similarity=0.568 Sum_probs=145.9
Q ss_pred ceEEEEEEEeCCCee-ecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010811 22 RSYQVVVAATRDMGI-GKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (500)
Q Consensus 22 rki~livAvs~dG~I-G~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~ 100 (500)
++|++|+|+|+||+| |.+|+|||++++|++||+++|++.++|++.++|||||||||++|.+++||++|+|||+||+...
T Consensus 4 ~~i~livA~Sldg~iiG~~g~lpW~l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~wrPlp~r~~iVlSr~~~~ 83 (227)
T 3cse_A 4 VPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRSFDG 83 (227)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTSSS
T ss_pred cEEEEEEEEcCCCCEECCCCCcCCCChHHHHHHHHHHccCCcccccCEEEECchhhhcccccccCCCcCeEEEEeCCCcc
Confidence 579999999966555 8899999999999999999998656667779999999999999864459999999999999753
Q ss_pred CCC-CCCCEEEECCHHHHHHHHHcCC-CCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----cc-CcccCC-CC
Q 010811 101 DIA-TVENVVICGSIGSALELLAASP-YCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IE-CDTFIP-SI 172 (500)
Q Consensus 101 ~~~-~~~~~~v~~sl~eai~~l~~~~-~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~----~~-Gd~fFP-~~ 172 (500)
... ..+++++++|+++|++.|++.. ...++++|||+||++||++|| ++||+++||+||.. ++ ||+||| .+
T Consensus 84 ~~~~~~~~~~v~~sl~~al~~lk~~~~~~~~~~~I~ViGG~~ly~~~L--~lvDel~lT~ip~~lG~G~~~gD~~Fp~~~ 161 (227)
T 3cse_A 84 ELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSM--DLADHWLITKIMPLPETTIPQMDTFLQKQE 161 (227)
T ss_dssp SCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHT--TTCSEEEEEEEEECTTSCCCCCSEECCHHH
T ss_pred ccccCCCCEEEeCCHHHHHHHHHhhhcccCCCCeEEEEcCHHHHHHHH--HhCCEEEEEEEEccccCCCccccccCCCCC
Confidence 111 1356888999999999997620 001357999999999999999 99999999999998 66 999999 66
Q ss_pred CCCCcEEeeee--------------c--------------CceecCccEEEEEEEEcc
Q 010811 173 DSSVFQPWYSS--------------F--------------PIVENNIRYCLSTYVRVR 202 (500)
Q Consensus 173 ~~~~~~l~~~~--------------~--------------~~~e~~~~~~f~~Y~r~~ 202 (500)
+...|++ +.+ . .++|+++.|.|++|+|+-
T Consensus 162 ~~~~w~l-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~g~~y~f~~~~r~~ 218 (227)
T 3cse_A 162 LEQRFYD-NSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKL 218 (227)
T ss_dssp HHHHEEE-CGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ChhhcEe-chhhhhhhcCccccCCccccccccccccccccceeECCEEEEEEEEEEec
Confidence 6556877 321 1 456899999999999973
No 37
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=100.00 E-value=3.8e-36 Score=286.10 Aligned_cols=172 Identities=40% Similarity=0.669 Sum_probs=144.2
Q ss_pred ceEEEEEEEeCCCe-eecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCC
Q 010811 22 RSYQVVVAATRDMG-IGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSF 100 (500)
Q Consensus 22 rki~livAvs~dG~-IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~ 100 (500)
++|++++|+|+||+ ||.+|+|||++++|++||+++|+...++++.++|||||||||++|.++|||++|+|||+||+...
T Consensus 4 ~~i~~i~A~sldg~iig~~g~lpW~~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~~~pl~~r~~iVlS~~~~~ 83 (192)
T 1aoe_A 4 PNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRSYEN 83 (192)
T ss_dssp CCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTTCCC
T ss_pred CEEEEEEEEcCCCCeECCCCCCCCCChhHHHHHHHHhcCCCcccCCCEEEECchHhhcccccccCCCCCeEEEEcCCCcc
Confidence 67999999996655 58899999999999999999998544455569999999999999854479999999999998742
Q ss_pred CCCCCCCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc----ccCcccCCCCCCCC
Q 010811 101 DIATVENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR----IECDTFIPSIDSSV 176 (500)
Q Consensus 101 ~~~~~~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~----~~Gd~fFP~~~~~~ 176 (500)
. ...+++++++|+++|++. ++ ++++|||+||+++|+++|++++|||++||++|.. ++||+|||. +...
T Consensus 84 ~-~~~~~~~v~~~~~~al~~-~~-----~~~~i~ViGG~~l~~~~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-~~~~ 155 (192)
T 1aoe_A 84 E-IIDDNIIHASSIESSLNL-VS-----DVERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLKF-PLES 155 (192)
T ss_dssp E-EEETTEEEESSHHHHHHT-CC-----SEEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECCC-CGGG
T ss_pred c-cCCCCEEEECCHHHHHHh-hc-----CCCeEEEEcCHHHHHHHhcCCCCCEEEEEEEEcccCCCCccceECCC-ChHH
Confidence 1 123568889999999987 53 3689999999999999999999999999999999 789999995 3467
Q ss_pred cEEeeee------------cCceecCccEEEEEEEEc
Q 010811 177 FQPWYSS------------FPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 177 ~~l~~~~------------~~~~e~~~~~~f~~Y~r~ 201 (500)
|++++.+ ..++++++.|+|++|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~~y~r~ 192 (192)
T 1aoe_A 156 WTKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp EEECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred cEEEeeeccccccccccccccccCCCeeEEEEEEEEC
Confidence 9987543 234578899999999984
No 38
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.97 E-value=1.1e-31 Score=255.72 Aligned_cols=131 Identities=28% Similarity=0.455 Sum_probs=111.1
Q ss_pred EEEEEEEeC--------CCeeecCCCCCC-CChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEE
Q 010811 24 YQVVVAATR--------DMGIGKDGKLPW-KLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVL 94 (500)
Q Consensus 24 i~livAvs~--------dG~IG~~g~lpW-~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVl 94 (500)
|++|+|+|+ ||+||.+|+||| ++|+|++||+++|+ +++|||||||||++| +|||+|+|||+
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG~~g~lpW~~l~~D~~~F~~~t~-------~~~vIMGRkTyesi~---~plp~R~~iVl 71 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTE-------GTIMIMGAKTFQSLP---TLLPGRSHIVV 71 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHT-------TSEEEEEHHHHHTCS---SCCTTSCEEEE
T ss_pred EEEEEEEcCccccCCCcCCeECCCCCCCCcCChHHHHHHHHHhc-------CCEEEEchhHhhhcc---cccCCCcEEEE
Confidence 899999999 999999999999 89999999999997 789999999999998 38999999999
Q ss_pred cCCCCCCC--CCC-----------------CCEEEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEE
Q 010811 95 TRSGSFDI--ATV-----------------ENVVICGSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIH 155 (500)
Q Consensus 95 Srt~~~~~--~~~-----------------~~~~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~ 155 (500)
||++.... ... +..++.+|++++++.+++. +++|||+||+++|+++| ++||+++
T Consensus 72 Sr~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~sl~eal~~lk~~-----~~~I~ViGG~~ly~~~L--~lvDel~ 144 (193)
T 1juv_A 72 CDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQ-----NSKVSVIGGPALLYAAL--PYADEVV 144 (193)
T ss_dssp CCTTSCCCCCTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEECT-----TSCEEEEECHHHHHHHG--GGCSEEE
T ss_pred cCCCcccccccccccceeecccccccccccccceecCCHHHHHHHHHcC-----CCcEEEECcHHHHHHHH--HhCCEEE
Confidence 99862210 011 1224667788887777542 58999999999999999 8999999
Q ss_pred EEEEC--ccccCcccCCC
Q 010811 156 ITEIE--TRIECDTFIPS 171 (500)
Q Consensus 156 lT~I~--~~~~Gd~fFP~ 171 (500)
||+|| ..++||+|||.
T Consensus 145 lT~ip~~~~~~gd~~F~~ 162 (193)
T 1juv_A 145 VSRIVKRHRVNSTVQLDA 162 (193)
T ss_dssp EEEEEESSCCCCSEEECH
T ss_pred EEEeccccccCCCeecCh
Confidence 99998 34699999993
No 39
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.96 E-value=4.9e-29 Score=231.57 Aligned_cols=163 Identities=27% Similarity=0.334 Sum_probs=136.6
Q ss_pred ceEEEEEEEeCCCeeecCCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCCCCCCcEEEEcCCCCCC
Q 010811 22 RSYQVVVAATRDMGIGKDGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRPLPGRLNVVLTRSGSFD 101 (500)
Q Consensus 22 rki~livAvs~dG~IG~~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~pl~~R~nIVlSrt~~~~ 101 (500)
||+++++|+|+||+||..++ ||+.++|+++|++++.. .++|||||+||++++ ||+++++++|+||++..
T Consensus 1 ~kv~l~~A~slDG~Ia~~~~-~W~~~~~~~~~~~~~~~------~dailmGr~T~~~l~---~p~~~~~~~V~s~~~~~- 69 (168)
T 1cz3_A 1 AKVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTE------IGNVVMGRITFEEIG---RPLPERLNVVLTRRPKT- 69 (168)
T ss_dssp CEEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHH------HTEEEEEHHHHHHHC---SCCTTSEEEEECSSCCC-
T ss_pred CeEEEEEEEcCCCeEECCCC-CCCChHHHHHHHHHHHh------CCEEEEChHHhhcCC---CCCCCCeEEEECCCCCc-
Confidence 57999999999999998666 99999999999999953 689999999999985 79999999999998751
Q ss_pred CCCCCCEEEEC-CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCcccCCCCCC-CCcE
Q 010811 102 IATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFIPSIDS-SVFQ 178 (500)
Q Consensus 102 ~~~~~~~~v~~-sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~Gd~fFP~~~~-~~~~ 178 (500)
...+++.++. |++++++.|++. +.++|||+||+++|++||++++|||+++|++|..+ +|+++||.++. ..|+
T Consensus 70 -~~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~lG~g~~~f~~~~~~~~l~ 144 (168)
T 1cz3_A 70 -SNNPSLVFFNGSPADVVKFLEGK----GYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLK 144 (168)
T ss_dssp -CSCTTEEEECSCHHHHHHHHHHT----TCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEEE
T ss_pred -cCCCCEEEEeCCHHHHHHHHHhC----CCCEEEEECCHHHHHHHHhCCCCCEEEEEEeceecCCCCcCCCCCCcccccE
Confidence 1234677776 999999999876 47899999999999999999999999999999988 69999998764 3688
Q ss_pred EeeeecCceecCccEEEEEEEEccc
Q 010811 179 PWYSSFPIVENNIRYCLSTYVRVRS 203 (500)
Q Consensus 179 l~~~~~~~~e~~~~~~f~~Y~r~~~ 203 (500)
+++... ..+ .++.++.|++.++
T Consensus 145 l~~~~~--~~~-~~~~~l~Y~~~~~ 166 (168)
T 1cz3_A 145 LLEMRR--LNE-RGTLFLKYSVEKS 166 (168)
T ss_dssp EEEEEE--CSS-SCCEEEEEEEC--
T ss_pred EeeeEE--eCC-CCEEEEEEEEccc
Confidence 876542 111 2579999998643
No 40
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.96 E-value=4.8e-29 Score=234.06 Aligned_cols=162 Identities=17% Similarity=0.230 Sum_probs=138.2
Q ss_pred cceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHHHhcccCCCCCCcEEEEccccccccC----CCCCCCCCCc
Q 010811 21 KRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHRPLPGRL 90 (500)
Q Consensus 21 mrki~livAvs~dG~IG-~~g~lpW~~~e-----D~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~~~~pl~~R~ 90 (500)
|||+++++|+|+||+|| .+|++||+.++ +.++|.+.+.. .++|||||+||++++ ...||+++++
T Consensus 3 M~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~~ailmGr~T~~~~~p~~~~~~~p~~~~~ 76 (178)
T 3jtw_A 3 ARKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSK------IDTVIMGRTTYEQVTQKLSPEKYVYADRQ 76 (178)
T ss_dssp CCCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHH------EEEEEEEHHHHHHHHHHTCSSSCTTTTSE
T ss_pred ceEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhc------CCEEEEChHHHhhhhhccCCCCCCCCCCC
Confidence 99999999999999999 69999998764 57899988753 789999999999985 1247999999
Q ss_pred EEEEcCCCCCCCCCCCCEEEEC-CHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCccc
Q 010811 91 NVVLTRSGSFDIATVENVVICG-SIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTF 168 (500)
Q Consensus 91 nIVlSrt~~~~~~~~~~~~v~~-sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~Gd~f 168 (500)
+||+||+... ..+++.++. |++++++.|++. ++++|||+||+++|++||++++|||+++|++|..+ +|+++
T Consensus 77 ~iV~s~~~~~---~~~~~~~~~~~l~~~l~~l~~~----~~~~i~v~GG~~l~~~~l~~~lvDel~l~~~p~~~G~g~~~ 149 (178)
T 3jtw_A 77 TYIVTSHLGE---DTDKIKYWKQSPVELVKRIQKE----KGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRL 149 (178)
T ss_dssp EEEECSSCCC---CCSSEEEECSCHHHHHHHHHTS----SCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEES
T ss_pred EEEEeCCCCC---CCCCEEEEcCCHHHHHHHHHhC----CCCEEEEEChHHHHHHHHHCCCceEEEEEEecEEEcCCCcc
Confidence 9999998754 345676665 999999999876 47899999999999999999999999999999999 89999
Q ss_pred CCCCCC-CCcEEeeeecCceecCccEEEEEEEE
Q 010811 169 IPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVR 200 (500)
Q Consensus 169 FP~~~~-~~~~l~~~~~~~~e~~~~~~f~~Y~r 200 (500)
||.++. ..|++++... . + ++.+++|.|
T Consensus 150 f~~~~~~~~l~l~~~~~--~-~--~~v~l~Y~r 177 (178)
T 3jtw_A 150 FDRLEEQVPVRLIDVYQ--K-N--ELVYSIYQR 177 (178)
T ss_dssp SSCCCSCCCEEEEEEEE--E-T--TEEEEEEEE
T ss_pred cCCCCcCcceEEeEEEE--E-C--CEEEEEEEe
Confidence 998764 5798886643 1 2 578888876
No 41
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.94 E-value=1.7e-26 Score=220.45 Aligned_cols=165 Identities=21% Similarity=0.241 Sum_probs=132.1
Q ss_pred CcceEEEEEEEeCCCeee-cCCCCCCCChh-----hHHHHHH-HhcccCCCCCCcEEEEccccccccCCC--CCCCCCCc
Q 010811 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS-----DLKFFKE-ITQITSDAGKRNAVIMGRKTWESIPLE--HRPLPGRL 90 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~~~e-----D~~~F~~-~T~~~~~~~~~~~vIMGRkTyeslp~~--~~pl~~R~ 90 (500)
.|+++++++|+|+||+|| .+|++||+.++ |...|.+ .+. .++|||||+|||+++.. .||+ +++
T Consensus 18 ~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~-------~~ailmGr~T~e~~~~~~~~~P~-~~~ 89 (197)
T 3ky8_A 18 QGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMER-------VDGLVMGRNTLDMVLSFDCDWPY-SKP 89 (197)
T ss_dssp TTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHH-------CSEEEEEHHHHHHHCCTTCCCCC-SSC
T ss_pred CCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHh-------CCEEEEcHHHhHhHhhcCCCCCC-CCc
Confidence 489999999999999998 69999998664 3444555 444 79999999999999742 3787 568
Q ss_pred EEEEcCCCCCCCCCC-CCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCcc
Q 010811 91 NVVLTRSGSFDIATV-ENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDT 167 (500)
Q Consensus 91 nIVlSrt~~~~~~~~-~~~~v~-~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~Gd~ 167 (500)
+||+||++....... +++.++ .|++++++.|++. +.++|||+||+++ ++||++++|||+++|++|..+ +|++
T Consensus 90 ~iVls~~~~~~~~~~~~~~~~v~~~l~~~l~~L~~~----~~~~i~v~GG~~l-~~~l~~glvDel~l~~~P~~lG~G~~ 164 (197)
T 3ky8_A 90 VFVLSNTMTEVPQGYEDKVFLVKGKLVDIIADLNAK----GFNELYIDGGVTI-QNFLKEDLIDEMVITRFPILLGGGVP 164 (197)
T ss_dssp EEEECSSCCSCCTTCTTTEEEECSCHHHHHHHHHHT----TCCEEEEESHHHH-HHHHHTTCCCEEEEEEESEECSSSEE
T ss_pred EEEEeCCCCCCccccCCCEEEEeCCHHHHHHHHHhC----CCCeEEEEehHHH-HHHHhCCCCCEEEEEEeeEEECCCCc
Confidence 999999975311111 367654 7999999999876 4789999999999 999999999999999999998 7999
Q ss_pred cCCCCCC-CCcEEeeeecCceecCccEEEEEEEEc
Q 010811 168 FIPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 168 fFP~~~~-~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
+||.++. ..|++++... .. .++.++.|.+.
T Consensus 165 ~f~~~~~~~~l~l~~~~~--~~--~g~v~l~Y~~~ 195 (197)
T 3ky8_A 165 LFGELESSLSFNVIKSEV--VL--DSLTQTTYHRK 195 (197)
T ss_dssp SCCCCSSCEEEEEEEEEE--ET--TTEEEEEEEEC
T ss_pred ccCCCCcCcceEEEEEEE--eC--CCEEEEEEEEc
Confidence 9998764 4788876542 22 35789999885
No 42
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.93 E-value=3.3e-26 Score=214.21 Aligned_cols=163 Identities=16% Similarity=0.168 Sum_probs=131.4
Q ss_pred CcceEEEEEEEeCCCeee-cCCCCCCCChh---h--HHHHHHHhcccCCCCCCcEEEEccccccccCC-CCCCCCCCcEE
Q 010811 20 PKRSYQVVVAATRDMGIG-KDGKLPWKLPS---D--LKFFKEITQITSDAGKRNAVIMGRKTWESIPL-EHRPLPGRLNV 92 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~~~e---D--~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~-~~~pl~~R~nI 92 (500)
.|+++++++|+|+||+|| .+|++||+.++ + +++|.+.+.. .++|||||+||++++. ..||+ ++++|
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~------~dailmGr~T~~~~~~~~~~P~-~~~~i 74 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIET------IGVLVMGASTYEWVVEHGDWSY-DQPAW 74 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHT------EEEEEEEHHHHHHHHHSSCCCC-SSCEE
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHh------CCEEEECHHHHhhhhcCCCCCC-CCCEE
Confidence 388999999999999996 69999998652 3 6899988753 7899999999999852 13555 88999
Q ss_pred EEcCCC-CCCCCCCCCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-cCcccC
Q 010811 93 VLTRSG-SFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-ECDTFI 169 (500)
Q Consensus 93 VlSrt~-~~~~~~~~~~~v~-~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~Gd~fF 169 (500)
|+||+. +. ...+++.++ .|++++++.|++.+ +.++|||+||+++|++||++++|||+++|++|..+ +|+++|
T Consensus 75 V~s~~~~~~--~~~~~~~~~~~dl~~~l~~L~~~~---~~~~v~v~GG~~l~~~~l~~gLvDel~l~~~P~~lG~g~~~f 149 (178)
T 2xw7_A 75 VLTHRPEIA--AESHPMQVFSGDVAELHPELVAAA---GGKDVWVVGGGDVAAQFVAADLIDEIIVSYAPCTLGVGSRVL 149 (178)
T ss_dssp EECSCGGGC--BTTBCCEEECSCHHHHHHHHHHHT---TTSEEEEEECHHHHHHHHHTTCCCEEEEEEESEECSSSSBSS
T ss_pred EEeCCCCCc--CCCCCEEEECCCHHHHHHHHHhcc---CCCcEEEEccHHHHHHHHHCCCCeEEEEEEeceEecCCCcCC
Confidence 999983 22 123456555 79999999998752 23899999999999999999999999999999998 899999
Q ss_pred CCCCCCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 170 PSIDSSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 170 P~~~~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
|..+ .|++++... . + ++.++.|.++
T Consensus 150 ~~~~--~l~l~~~~~--~-~--~~v~l~y~~~ 174 (178)
T 2xw7_A 150 PMRS--EWVLDDCAR--N-G--DFVCARWKRP 174 (178)
T ss_dssp CSCE--ECEEEEEEE--E-T--TEEEEEEECC
T ss_pred CCCC--ceEEEeEEE--e-C--CeEEEEEEEc
Confidence 9876 688876543 2 2 5788899875
No 43
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=8.8e-25 Score=206.24 Aligned_cols=165 Identities=14% Similarity=0.182 Sum_probs=130.3
Q ss_pred CCcceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCCCCC----------CC
Q 010811 19 NPKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLEHRP----------LP 87 (500)
Q Consensus 19 ~~mrki~livAvs~dG~IG~-~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~~~p----------l~ 87 (500)
..|+++++++|+|+||+||. +|+++|++++|..+|.+.+.. .++|||||+||++++. .|| ++
T Consensus 6 ~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~------~dail~Gr~T~~~~~~-~~p~~~Pd~~~~~~~ 78 (189)
T 2gd9_A 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQ------IDTILYGRKSFDLWGQ-YIPKNEDPDTEKELW 78 (189)
T ss_dssp CCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHT------EEEEEEEHHHHHHHTT-C----------CCHH
T ss_pred CCCceEEEEEEEccccceECCCCCcCcccCChHHHHHHHHhc------CCEEEEChHHHhhhhh-cCCCCCCccccchhH
Confidence 45889999999999999986 899999977665578887642 7999999999999963 344 22
Q ss_pred ----CCcEEEEcCCCCCCCCCCCCEEEE-CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECcc
Q 010811 88 ----GRLNVVLTRSGSFDIATVENVVIC-GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETR 162 (500)
Q Consensus 88 ----~R~nIVlSrt~~~~~~~~~~~~v~-~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~ 162 (500)
++++||+|++... ... ++.++ .|++++++.|++. ++++|||+||+++|++||++++|||++++++|..
T Consensus 79 ~~~~~~~~iV~t~~~~~--~~~-~~~~~~~~l~~~l~~L~~~----~~~~i~v~GG~~l~~~~l~~glvDel~l~~~P~~ 151 (189)
T 2gd9_A 79 KLVHSKKKYVFSRTQNE--IDN-QAIFINDNILEEVNKLKKN----PGKDIWLYGGASLITTFINLGLVDEFRLSIHPVV 151 (189)
T ss_dssp HHHHHSEEEEECCEEET--TTT-EEECCHHHHHHHHHHHHHS----CCSEEEEEECHHHHHHHHHTTCCCEEEEEECSEE
T ss_pred HHhCCCCEEEEeCCCCC--CCC-CeEEEcCCHHHHHHHHHhC----CCCeEEEEChHHHHHHHHHCCCceEEEEEEeCEE
Confidence 7899999998532 122 56554 4999999999876 4789999999999999999999999999999999
Q ss_pred c-cCcccCCCCCC-CCcEEeeeecCceecCccEEEEEEEEc
Q 010811 163 I-ECDTFIPSIDS-SVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 163 ~-~Gd~fFP~~~~-~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
+ +|+++||.+.. ..|++++... ..+ .+.++.|.++
T Consensus 152 lG~g~~~f~~~~~~~~l~l~~~~~--~~~--~~~~l~y~~~ 188 (189)
T 2gd9_A 152 LGEGKPLFIDVKQRINLKMVNTRT--FSS--GVVQIVYHWN 188 (189)
T ss_dssp CSSSEESSCSCCSCEECEEEEEEE--CTT--SCEEEEEEC-
T ss_pred eCCCCccCCCCCCCcceEEEEEEE--cCC--CEEEEEEEeC
Confidence 8 79999998643 4788876542 223 4577788753
No 44
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.89 E-value=5.3e-23 Score=200.42 Aligned_cols=172 Identities=17% Similarity=0.178 Sum_probs=119.8
Q ss_pred CcceEEEEEEEeCCCeeec---CCCCC-------CCChh-hH-H------HHHHHhcc-c--CC----------CCCCcE
Q 010811 20 PKRSYQVVVAATRDMGIGK---DGKLP-------WKLPS-DL-K------FFKEITQI-T--SD----------AGKRNA 68 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~---~g~lp-------W~~~e-D~-~------~F~~~T~~-~--~~----------~~~~~~ 68 (500)
-|+|+++.+++|+||+|+. ++.+- |..+. ++ . +|.+.... . +. -...++
T Consensus 19 ~m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~i~~ 98 (231)
T 3kgy_A 19 GMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGA 98 (231)
T ss_dssp GSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHTEEE
T ss_pred ccceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHhcCCE
Confidence 4999999999999999964 22222 43222 21 1 33222100 0 00 012689
Q ss_pred EEEccccccccCCC---CCCCCCCcEEEEcCCCCCCCCCCCCE---EEECCHHHHHHHHHcCCCCCCCCcEEEEecHHHH
Q 010811 69 VIMGRKTWESIPLE---HRPLPGRLNVVLTRSGSFDIATVENV---VICGSIGSALELLAASPYCLSIEKVFVIGGGQIL 142 (500)
Q Consensus 69 vIMGRkTyeslp~~---~~pl~~R~nIVlSrt~~~~~~~~~~~---~v~~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy 142 (500)
+||||||||+++.. .+|+ +|+|||+||++...+...+++ ++.+|++++++.+++.. ++++|||+||+++|
T Consensus 99 vIMGRkTye~~~~~wp~~~p~-~r~~iVlS~~~~~~~~~~~~~~v~~v~~~l~eal~~l~~~~---~~~~I~V~GG~~l~ 174 (231)
T 3kgy_A 99 HIMGKRMFEGGERGWPEEAPF-HTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAA---GERDIRISGGANVI 174 (231)
T ss_dssp EEEEHHHHHHHHHHSCSSCSC-CSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHHH---TTSEEEEEECHHHH
T ss_pred EEEChhhhhhhhhhcCCcCcC-CCcEEEEcCCCCCccccCCCcEEEEEcCCHHHHHHHHHhhc---CCCcEEEeCCHHHH
Confidence 99999999999631 1244 899999999984311111233 35579999999997521 36899999999999
Q ss_pred HHHhcCCCcCEEEEEEECccc-cCcccCCCCCC--CCcEEeeeecCceecCccEEEEEEEE
Q 010811 143 SEALNAPECDAIHITEIETRI-ECDTFIPSIDS--SVFQPWYSSFPIVENNIRYCLSTYVR 200 (500)
Q Consensus 143 ~~~L~~~lvDei~lT~I~~~~-~Gd~fFP~~~~--~~~~l~~~~~~~~e~~~~~~f~~Y~r 200 (500)
++||++++|||++||++|+.+ +|+++||.++. ..|++.+.. ..+ .++.+.|.|
T Consensus 175 ~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~~~~~~l~l~~~~---~~~--Gvv~l~Y~r 230 (231)
T 3kgy_A 175 QQYLNLGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRVL---ASP--TATHLRYVR 230 (231)
T ss_dssp HHHHHTTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEEE---ECS--SCEEEEEEE
T ss_pred HHHHhCCCCCEEEEEEeceeccCCCccCCCCCCccceeEEEEEE---cCC--CEEEEEEEe
Confidence 999999999999999999998 89999999874 357765322 334 468899987
No 45
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=99.68 E-value=3e-16 Score=163.25 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=122.5
Q ss_pred CcceEEEEEEEeCCCeee-cCCCCCCC-ChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCC---CC------C---
Q 010811 20 PKRSYQVVVAATRDMGIG-KDGKLPWK-LPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HR------P--- 85 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG-~~g~lpW~-~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~---~~------p--- 85 (500)
.++++++.+|+|+||+|+ .+|+.+|. -+++.++|.++... .++|||||+||+..... .| |
T Consensus 156 ~rP~V~lk~A~SLDG~Ia~~~G~~~Wit~~~~~~~~~~lr~~------~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rv 229 (373)
T 2b3z_A 156 GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT------HQSILVGVGTVKADNPSLTCRLPNVTKQPVRV 229 (373)
T ss_dssp SSCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH------SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEE
T ss_pred cchhheeeeeecCCCceeccCCCccccCCHHHHHHHHHHHHH------CCEEEEChhhhhhcCCcccccCcCCCCCCeEE
Confidence 478899999999999998 58999997 47778888887643 78999999999985210 01 1
Q ss_pred -------CC---------CCcEEEEcCCCCCC----CCCCCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEecH
Q 010811 86 -------LP---------GRLNVVLTRSGSFD----IATVENVVIC------GSIGSALELLAASPYCLSIEKVFVIGGG 139 (500)
Q Consensus 86 -------l~---------~R~nIVlSrt~~~~----~~~~~~~~v~------~sl~eai~~l~~~~~~~~~~~I~ViGGa 139 (500)
++ ++++||+|++.... .-.+.++.+. .|+.++++.|++. +.++|||.||+
T Consensus 230 Vld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~----g~~~vlveGG~ 305 (373)
T 2b3z_A 230 ILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEE----GIMSVYVEGGS 305 (373)
T ss_dssp EECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHT----TCCEEEEEECH
T ss_pred EEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHC----CCCEEEEEEhH
Confidence 11 57788888765210 0012344443 5899999999886 57899999999
Q ss_pred HHHHHHhcCCCcCEEEEEEECccc-c--CcccCCCCC------CCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 140 QILSEALNAPECDAIHITEIETRI-E--CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 140 ~Iy~~~L~~~lvDei~lT~I~~~~-~--Gd~fFP~~~------~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
+++.+||++++|||+++++.|..+ . |.++|+... ...|++++... ..++ ....|.+.
T Consensus 306 ~l~~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~--~g~d---v~l~y~~~ 371 (373)
T 2b3z_A 306 AVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQ--IGRD---IKLTAKPT 371 (373)
T ss_dssp HHHHHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEE--ETTE---EEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEE--ECCc---EEEEEEEC
Confidence 999999999999999999999988 3 678887541 13567665532 2232 35667654
No 46
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=99.63 E-value=1.3e-14 Score=139.79 Aligned_cols=166 Identities=11% Similarity=0.096 Sum_probs=116.1
Q ss_pred CcceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhcccCCCCCCcEEEEccccccccC----C-----CCCCCC-
Q 010811 20 PKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----L-----EHRPLP- 87 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~-~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~-----~~~pl~- 87 (500)
.++++++.+|+|+||+|+. +|.. |.- +++.+++.+.... .++|||||+||+... . ..+|+.
T Consensus 2 ~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~------~dailvG~~T~~~d~p~L~~~r~~~~~~P~~v 74 (219)
T 2azn_A 2 KKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRAN------VDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRI 74 (219)
T ss_dssp CCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHT------SSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEE
T ss_pred CCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHH------CCEEEEChhehhhcCCcCccccccCCCCCEEE
Confidence 3678999999999999965 7777 963 5556667765542 789999999999651 1 123431
Q ss_pred -----------------CCcEEEEcCCCCCCCC----C---CCCEEEE------CCHHHHHHHHHcCCCCCCCCcEEEEe
Q 010811 88 -----------------GRLNVVLTRSGSFDIA----T---VENVVIC------GSIGSALELLAASPYCLSIEKVFVIG 137 (500)
Q Consensus 88 -----------------~R~nIVlSrt~~~~~~----~---~~~~~v~------~sl~eai~~l~~~~~~~~~~~I~ViG 137 (500)
..+.||+|++...... . ..++.+. .++.++++.|++. +.++|+|.|
T Consensus 75 V~d~~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~~~~dl~~~l~~L~~~----g~~~ilveG 150 (219)
T 2azn_A 75 VVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDK----GIKSILLEG 150 (219)
T ss_dssp EECTTCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHT----TCCEEEEEE
T ss_pred EECCCCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCCCCcCHHHHHHHHHHc----CCCEEEEee
Confidence 2455666655421000 0 1134332 4899999999886 578999999
Q ss_pred cHHHHHHHhcCCCcCEEEEEEECcccc---CcccCCCCC------CCCcEEeeeecCceecCccEEEEEEEEc
Q 010811 138 GGQILSEALNAPECDAIHITEIETRIE---CDTFIPSID------SSVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 138 Ga~Iy~~~L~~~lvDei~lT~I~~~~~---Gd~fFP~~~------~~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
|+++..+||++++|||+++++.|..+. |.++|+... ...|++++... ..+ -.++.|.+.
T Consensus 151 G~~l~~s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~--~~~---~v~l~y~~~ 218 (219)
T 2azn_A 151 GGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYR--LGE---GIVLEFKVK 218 (219)
T ss_dssp CHHHHHHHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEE--ETT---EEEEEEEEC
T ss_pred CHHHHHHHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEE--ECC---eEEEEEEEC
Confidence 999999999999999999999999883 557887642 23677775532 222 256778764
No 47
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=99.43 E-value=4.9e-12 Score=130.87 Aligned_cols=165 Identities=20% Similarity=0.194 Sum_probs=114.7
Q ss_pred CcceEEEEEEEeCCCeeec-CCCCCCCChhhHHHHHHHhcccCCCCCCcEEEEccccccccCCC---CCCCCCCc-EEEE
Q 010811 20 PKRSYQVVVAATRDMGIGK-DGKLPWKLPSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE---HRPLPGRL-NVVL 94 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~---~~pl~~R~-nIVl 94 (500)
.++.+++.+|+|+||+|+. +|+..|.-+++.+++.++... .++|||||+||+..... .++....| .||+
T Consensus 158 ~rP~V~lk~A~SLDG~IA~~~G~s~Wit~~~~~~~~~lr~~------~DAILvG~~T~~~d~P~Lt~r~~~g~~P~rvVl 231 (360)
T 2hxv_A 158 KRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNI------YSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVIL 231 (360)
T ss_dssp SSCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHHH------SSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEE
T ss_pred chhhheeehhhccCCcccCCCCCcccCCHHHHHHHHHHHHH------CCEEEECccchhhhCCcccccCCCCCCCeEEEE
Confidence 3678999999999999975 888899654455666665443 68999999999864110 11222333 5999
Q ss_pred cCCCCCCCC-----CC-CCEEE-E-----------------CCHHHHHHHHHcCCCCCCCCcEEEEecHHHHHHHhcCCC
Q 010811 95 TRSGSFDIA-----TV-ENVVI-C-----------------GSIGSALELLAASPYCLSIEKVFVIGGGQILSEALNAPE 150 (500)
Q Consensus 95 Srt~~~~~~-----~~-~~~~v-~-----------------~sl~eai~~l~~~~~~~~~~~I~ViGGa~Iy~~~L~~~l 150 (500)
|++...... .. ...++ . .|+.++++.|++. ++++|+|.||+++..+||+++
T Consensus 232 d~~~~~p~~~~~~~~~~~~~iv~t~~~~~~~~~~v~v~~~~~dl~~~l~~L~~~----g~~~vlVeGG~~L~~sfL~ag- 306 (360)
T 2hxv_A 232 DRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYER----DIDSVLVEGGSKVFSEFLDHA- 306 (360)
T ss_dssp CTTCTTTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHT----TCCEEEECCCHHHHHHHGGGC-
T ss_pred CCCCCCChhHhHHhcCCCcEEEEECCCchhhccCcEEEcCCCCHHHHHHHHHhC----CCCEEEEEecHHHHHHHHHCC-
Confidence 987532111 00 12222 2 3899999999887 578999999999999999999
Q ss_pred cCEEEEEEECccc-cCcccCCC----CCC-CCcEEeeeecCceecCccEEEEEEEEc
Q 010811 151 CDAIHITEIETRI-ECDTFIPS----IDS-SVFQPWYSSFPIVENNIRYCLSTYVRV 201 (500)
Q Consensus 151 vDei~lT~I~~~~-~Gd~fFP~----~~~-~~~~l~~~~~~~~e~~~~~~f~~Y~r~ 201 (500)
||+++++.|..+ +|-++|.. +.. ..|++++... ..++ ..+.|.++
T Consensus 307 -DEl~l~iaP~llG~G~~lf~~~~~~~~~~~~L~l~~~~~--~g~d---v~l~y~~~ 357 (360)
T 2hxv_A 307 -DVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEF--SDSE---FLVEMRPC 357 (360)
T ss_dssp -SEEEEEEESCCCSSSEETTTTCCCCTTSCCCEEEEEEEE--ETTE---EEEEEEEC
T ss_pred -CEEEEEEcceEEcCCCcccccccccccccccceEeEEEE--ECCc---EEEEEEeC
Confidence 999999999988 55688854 222 3677775542 2232 56677654
No 48
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=99.43 E-value=2.5e-12 Score=134.96 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=109.3
Q ss_pred CcceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhcccCCCCCCcEEEEccccccccC----CCCC---------
Q 010811 20 PKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIP----LEHR--------- 84 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~-~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp----~~~~--------- 84 (500)
.|+.+++.+|+|+||+|+. +|+..|.- +++.+++.++... .++|||||+||+..- ...|
T Consensus 172 ~rP~V~~k~A~SLDG~IA~~~G~s~Wit~~~~r~~~~~lra~------~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~ 245 (402)
T 2g6v_A 172 GFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ------SHAILTSSATVLADDPALTVRWSELDEQTQAL 245 (402)
T ss_dssp SSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHH------CSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSS
T ss_pred ccchheeeeeecCCCCCccCCCCcCCcCCHHHHHHHHHHHHh------CCEEEECHHHHhhcCccccccccccccccccc
Confidence 4788999999999999975 88889974 4555666655543 789999999998651 1111
Q ss_pred --------CC-----------------C-CCcEEEEcCCCCCCCCCCCCEEEE--C------CHHHHHHHHHcCCCCCCC
Q 010811 85 --------PL-----------------P-GRLNVVLTRSGSFDIATVENVVIC--G------SIGSALELLAASPYCLSI 130 (500)
Q Consensus 85 --------pl-----------------~-~R~nIVlSrt~~~~~~~~~~~~v~--~------sl~eai~~l~~~~~~~~~ 130 (500)
|+ . +.+.||+|++.... .-..++.+. . |+.++++.|++. +.
T Consensus 246 ~~~~~~~~P~rvVld~~~~lp~~a~~~~~~~~~iV~t~~~~~~-~l~~gv~vi~~~~~~g~vdl~~~l~~L~~~----g~ 320 (402)
T 2g6v_A 246 YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSR-EWPETVRTLLIPEHKGHLDLVVLMMQLGKQ----QI 320 (402)
T ss_dssp CCGGGCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCS-CCCTTEEEEECCEETTEECHHHHHHHHHHT----TC
T ss_pred ccccccCCCeEEEECCCCCCChhhHhhcCCCCEEEEECCcchh-hhcCCCEEEEecCCCCCCCHHHHHHHHHhC----CC
Confidence 11 0 34667777654210 012244443 3 899999999886 57
Q ss_pred CcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-c-CcccCCCC-----C-CCCcEEeeee
Q 010811 131 EKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPSI-----D-SSVFQPWYSS 183 (500)
Q Consensus 131 ~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~-Gd~fFP~~-----~-~~~~~l~~~~ 183 (500)
++|+|.||+++..+||++++|||+++++.|..+ . |.++|+.. . ...|++++..
T Consensus 321 ~~vlVEGG~~L~~sfL~agLVDEl~l~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~~ 381 (402)
T 2g6v_A 321 NSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIR 381 (402)
T ss_dssp CEEEECCCHHHHHHHHHHTCCCEEEEEECSCCCSSSSCBSCCCCC-------CCCEEEEEE
T ss_pred CEEEEEEhHHHHHHHHHCCCccEEEEEEccEEeCCCCcCCCCCccccccccccccEEeEEE
Confidence 899999999999999999999999999999988 4 78888763 1 2367776553
No 49
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=99.36 E-value=3.2e-11 Score=119.98 Aligned_cols=170 Identities=15% Similarity=0.148 Sum_probs=114.8
Q ss_pred CcceEEEEEEEeCCCeeec-CCCCCCCC-hhhHHHHHHHhcccCCCCCCcEEEEccccccccCCC--C----CC------
Q 010811 20 PKRSYQVVVAATRDMGIGK-DGKLPWKL-PSDLKFFKEITQITSDAGKRNAVIMGRKTWESIPLE--H----RP------ 85 (500)
Q Consensus 20 ~mrki~livAvs~dG~IG~-~g~lpW~~-~eD~~~F~~~T~~~~~~~~~~~vIMGRkTyeslp~~--~----~p------ 85 (500)
.++++++.+|+|+||+ +. +|...|.- +++.+++.++-.. .++|||||+||+..-.. . +|
T Consensus 32 ~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~------~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~ 104 (270)
T 2p4g_A 32 NEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGW------ADAIVVGAETARKENYGPVVLPHGIKNQRQKL 104 (270)
T ss_dssp HCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHH------CSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHT
T ss_pred CCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHH------CCEEEEChHHhhhhCCcccccccccccccccc
Confidence 3678999999999999 64 88888963 5556666665442 78999999999843100 0 00
Q ss_pred -C-CCCcEEEEcCCCCCCCC-----C-CC-----------------------------CE--EEE----CCHHHHHHHHH
Q 010811 86 -L-PGRLNVVLTRSGSFDIA-----T-VE-----------------------------NV--VIC----GSIGSALELLA 122 (500)
Q Consensus 86 -l-~~R~nIVlSrt~~~~~~-----~-~~-----------------------------~~--~v~----~sl~eai~~l~ 122 (500)
. +..+.||++++...... . .+ ++ +.+ .++.++++.|+
T Consensus 105 g~~~~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~ 184 (270)
T 2p4g_A 105 GRCGLPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALH 184 (270)
T ss_dssp TCCSSCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHH
T ss_pred CCCCCCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHH
Confidence 0 11234555554321000 0 00 12 111 26889999998
Q ss_pred cCCCCCCCCcEEEEecHHHHHHHhcCCCcCEEEEEEECccc-c-CcccCCC--CC-CCCcEEeeeecCceecCccEEEEE
Q 010811 123 ASPYCLSIEKVFVIGGGQILSEALNAPECDAIHITEIETRI-E-CDTFIPS--ID-SSVFQPWYSSFPIVENNIRYCLST 197 (500)
Q Consensus 123 ~~~~~~~~~~I~ViGGa~Iy~~~L~~~lvDei~lT~I~~~~-~-Gd~fFP~--~~-~~~~~l~~~~~~~~e~~~~~~f~~ 197 (500)
+. +.++|+|.||+++..+||++++|||+++++.|..+ . |.++|+. .. ...|++++... .. -.+..++.
T Consensus 185 ~~----g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~~~~~~~~l~l~~~~~--~~-~~g~v~l~ 257 (270)
T 2p4g_A 185 AR----RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLS--SS-PNGLIFSR 257 (270)
T ss_dssp TT----TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEE--EC-TTCCEEEE
T ss_pred HC----CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCcCcCcCcceEEEEEEE--ec-cCCEEEEE
Confidence 76 58899999999999999999999999999999988 3 7788876 22 24788876532 11 02468899
Q ss_pred EEEccc
Q 010811 198 YVRVRS 203 (500)
Q Consensus 198 Y~r~~~ 203 (500)
|.+.+.
T Consensus 258 Y~~~~~ 263 (270)
T 2p4g_A 258 YKVIRD 263 (270)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 988644
No 50
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=26.41 E-value=70 Score=24.82 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=34.2
Q ss_pred HHhhcCCcceEEEEEECcccccccchHHHHHHHhcCCCCCCeEEe
Q 010811 451 IAHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLPKPFPVSII 495 (500)
Q Consensus 451 iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p~~~P~l~~ 495 (500)
-|...|+++|..+..++...+-.-..+++.++|...+...-.+.+
T Consensus 41 pA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~ 85 (95)
T 3r68_A 41 PAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLLVL 85 (95)
T ss_dssp HHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEE
Confidence 377889999999999999999876667788888875444333333
No 51
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=21.52 E-value=1.3e+02 Score=22.87 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=30.6
Q ss_pred HhhcCCcceEEEEEECcccccccchHHHHHHHhcCC
Q 010811 452 AHVCDLAPGDFIHVIGDAHVYRNHVRPLEEQLQKLP 487 (500)
Q Consensus 452 A~~~g~~~G~~~~~~~~~HIY~~h~~~~~~~l~r~p 487 (500)
|...|+++|..+..++...|-.-.++.+.++|...+
T Consensus 39 A~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~ 74 (87)
T 2pa1_A 39 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP 74 (87)
T ss_dssp HHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC
T ss_pred HHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence 678899999999999999997765777888888766
Done!