BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010812
(500 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FPS3|UBP24_ARATH Ubiquitin carboxyl-terminal hydrolase 24 OS=Arabidopsis thaliana
GN=UBP24 PE=1 SV=1
Length = 551
Score = 476 bits (1225), Expect = e-133, Method: Compositional matrix adjust.
Identities = 277/511 (54%), Positives = 346/511 (67%), Gaps = 32/511 (6%)
Query: 1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSL 60
MS+ K+FVFGSFTE ETRS+ + +KP + K +QFGSLN E+S
Sbjct: 1 MSEKKVFVFGSFTEHETRSFFE-------QKPTKDPQNSKDKCVGSIQFGSLNLAAENSS 53
Query: 61 VGTTDEPNGKSVVDGPVVFQPSTLLKKDDKVKSVGASNDHDL-----GAVGCPK---ENG 112
V T E K DG V S + S +ND D ++ P+ +NG
Sbjct: 54 VNTNGELK-KGEADGTVKSAGSQERLDASRPASSDKNNDSDAKLPRKNSLRVPEHVVQNG 112
Query: 113 HIKN-STNGPALSNGVNHLKADGIDFSSFHQNAGGHANP---SPISKFHVLCDGNIDGRD 168
IK S + +L+NGV +K D I + + G ++P + SKF L D D
Sbjct: 113 IIKEISESNKSLNNGV-AVKTDPIGLDNLSM-SDGESDPVYKASSSKFQAL-----DNED 165
Query: 169 QNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQ 228
++ + + SI K +K E V VKD PRGLIN+GNLCFLNATLQAL+SCSPFVQ
Sbjct: 166 FSSDSSSGSIQRKKN--LKVPTESVPPVKDFTPRGLINAGNLCFLNATLQALLSCSPFVQ 223
Query: 229 LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288
LLQ+++ +DIPKA PTL AF F+S+ D PS SS + N++V++ GRPF P+MFE VL+
Sbjct: 224 LLQKIQLQDIPKADSPTLAAFSEFISELDVPSS-SSIRNNVTVVEAGRPFRPAMFEGVLR 282
Query: 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED-- 346
NFTPDV N++SGRPRQEDAQEFLSFIMDQMHDELLKL+ +S + + ++++S A +D
Sbjct: 283 NFTPDVLNNMSGRPRQEDAQEFLSFIMDQMHDELLKLKEQSPKVTASKSSVISSANDDGD 342
Query: 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE 406
EWETVGPKNKSAVTRTQSF+PS LS+IFGGQLKSVVKA+G KASATVQP+LLLHLDI+ +
Sbjct: 343 EWETVGPKNKSAVTRTQSFVPSELSEIFGGQLKSVVKAKGTKASATVQPYLLLHLDIHPD 402
Query: 407 AVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQG 466
V IEDAL LFSA E+LEGYR S TG GVV+A KS+KIQ LSKI+ILHLMRFSYGSQG
Sbjct: 403 GVQGIEDALHLFSAQEDLEGYRASVTGKTGVVSASKSIKIQKLSKIMILHLMRFSYGSQG 462
Query: 467 STKLHKSVRFPLQLVLGRDLLVTPSAEVLQF 497
STKL K V+FPL+L L R LV+ S E L++
Sbjct: 463 STKLRKGVKFPLELNLNRSHLVSLSNESLRY 493
>sp|Q7ZXR7|UB10B_XENLA Ubiquitin carboxyl-terminal hydrolase 10-B OS=Xenopus laevis
GN=usp10-b PE=2 SV=1
Length = 805
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 186/326 (57%), Gaps = 35/326 (10%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 410 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQRPCTS 465
Query: 243 YPTLTAFVGFVSDF-DTPSGGSSKK----KNISVLDIGRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F + P +K+ K I + G PF P+ +L F +S
Sbjct: 466 TPMIDSFVRLMNEFTNMPILPKAKQAPGEKVIKDIRPGAPFEPTYIYRLLTVFK----SS 521
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------- 344
+S + RQEDA+E+L FI++ +H+E+L L Q + IN + + E
Sbjct: 522 LSEKGRQEDAEEYLGFILNGLHEEMLALKKLLLPQNDQIHINNCPNPVSGVEEVNKEEQE 581
Query: 345 --EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLD 402
++EWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L LD
Sbjct: 582 GSDEEWEQVGPRNKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQLD 641
Query: 403 IYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462
I SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF +
Sbjct: 642 IQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFVF 698
Query: 463 -GSQGSTKLHKSVRFPLQLVLGRDLL 487
+ G KL K++ +P+ L + +DLL
Sbjct: 699 EKTGGCQKLIKNIEYPVDLEVSKDLL 724
>sp|Q2NL57|UB10A_XENLA Ubiquitin carboxyl-terminal hydrolase 10-A OS=Xenopus laevis
GN=usp10-a PE=2 SV=1
Length = 791
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 185/327 (56%), Gaps = 37/327 (11%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 396 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQKPCTS 451
Query: 243 YPTLTAFVGFVSDFDT----PSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPN 296
P + +FV +++F P + + + V DI G PF P+ +L F +
Sbjct: 452 TPMIDSFVRLMNEFTNMPILPKAKQAPGEKV-VRDIRPGAPFEPAYIYRLLTVFK----S 506
Query: 297 SISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------ 344
S+S + RQEDA+E+L FI++ +H+E+L L Q + IN + + E
Sbjct: 507 SLSEKGRQEDAEEYLGFILNGLHEEMLALKKLLLPQNDKIHINNGPDPVFATEEVNKEEQ 566
Query: 345 ---EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHL 401
++EWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L L
Sbjct: 567 EGSDEEWEQVGPRNKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQL 626
Query: 402 DIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFS 461
DI SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF
Sbjct: 627 DIQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFV 683
Query: 462 Y-GSQGSTKLHKSVRFPLQLVLGRDLL 487
+ + G KL K++ +P+ L + +DLL
Sbjct: 684 FEKTGGCQKLIKNIEYPVDLEISKDLL 710
>sp|Q6DIJ4|UBP10_XENTR Ubiquitin carboxyl-terminal hydrolase 10 OS=Xenopus tropicalis
GN=usp10 PE=2 SV=1
Length = 805
Score = 202 bits (513), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 117/326 (35%), Positives = 186/326 (57%), Gaps = 35/326 (10%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 410 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPVYTKAQRPCTS 465
Query: 243 YPTLTAFVGFVSDF-DTP----SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F + P + +S +K I + G PF P+ +L F +S
Sbjct: 466 TPMIDSFVRLMNEFTNMPILPKAKQASGEKVIRDIRPGAPFEPAYIYRLLTVFK----SS 521
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAE------- 344
+S + RQEDA+E+L FI++ +H+E+L L Q + IN + E
Sbjct: 522 LSEKGRQEDAEEYLGFILNGLHEEMLSLKKLLLPQNDKIHINNGPDPVSEKEEINKDEQE 581
Query: 345 --EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLD 402
++EWE VGP++KS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L LD
Sbjct: 582 GSDEEWEQVGPRHKSSVTRQADFVQTPITDIFGGHMRSVVYQQSSKESATLQPFFTLQLD 641
Query: 403 IYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462
I SE + T++DAL A E+++GY T + + + V ++ L +L+LHL RF +
Sbjct: 642 IQSEKIRTVQDALESLVARESVQGYTTKTKQEVEIC---RRVTLEELPPVLVLHLKRFVF 698
Query: 463 -GSQGSTKLHKSVRFPLQLVLGRDLL 487
+ G KL K++ +P+ L + +DLL
Sbjct: 699 EKTGGCQKLIKNIEYPVDLEISKDLL 724
>sp|Q5ZJN4|UBP10_CHICK Ubiquitin carboxyl-terminal hydrolase 10 OS=Gallus gallus GN=USP10
PE=2 SV=1
Length = 785
Score = 198 bits (504), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 182/327 (55%), Gaps = 36/327 (11%)
Query: 186 MKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAG 242
+K +++PV L PRGLIN GN C++NATLQAL++C P L++ + P
Sbjct: 389 VKLVHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKSIPMYSKSQRPCTS 444
Query: 243 YPTLTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNS 297
P + +FV +++F P + V DI G F P+ +L + +S
Sbjct: 445 TPMIDSFVRLMNEFTNMPVPPKAKQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSS 500
Query: 298 ISGRPRQEDAQEFLSFIMDQMHDELLKLQ------GESTSI-NGANTALV---------S 341
+S + RQEDA+E+L FI++ +H+E+L L+ E S+ NG V
Sbjct: 501 LSEKGRQEDAEEYLGFILNGLHEEMLTLKKLLSPHNEKLSVSNGPEVQTVREEEEQDEQG 560
Query: 342 LAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHL 401
EDEWE VGP+NKS+VTR F+ + ++DIFGG ++SVV Q +K SAT+QPF L L
Sbjct: 561 EGSEDEWEQVGPRNKSSVTRQADFVQTPITDIFGGHIRSVVYQQSSKESATLQPFFTLQL 620
Query: 402 DIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFS 461
DI S+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF
Sbjct: 621 DIQSDKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEELPPVLVLHLKRFV 677
Query: 462 Y-GSQGSTKLHKSVRFPLQLVLGRDLL 487
Y + G KL K++ +P+ L + ++LL
Sbjct: 678 YEKTGGCQKLIKNIEYPVDLEISKELL 704
>sp|Q3KR59|UBP10_RAT Ubiquitin carboxyl-terminal hydrolase 10 OS=Rattus norvegicus
GN=Usp10 PE=2 SV=1
Length = 794
Score = 195 bits (495), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 179/313 (57%), Gaps = 31/313 (9%)
Query: 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPTLTAFVGFVSD 255
L PRGLIN GN C++NATLQAL++C P L++ L ++ P P + +FV +++
Sbjct: 408 LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPMIDSFVRLMNE 467
Query: 256 FD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEF 310
F P + V DI G F P+ +L + +S+S + RQEDA+E+
Sbjct: 468 FTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSEKGRQEDAEEY 523
Query: 311 LSFIMDQMHDELLKLQG------ESTSI-NGANTALVSLAE--------EDEWETVGPKN 355
L FI++ +H+E+L L+ E S+ NG + L+ E EDEWE VGPKN
Sbjct: 524 LGFILNGLHEEMLSLKKLLSPTHEKHSVSNGPGSHLIEDEELEDTGEGSEDEWEQVGPKN 583
Query: 356 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDAL 415
K++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S+ + T++DAL
Sbjct: 584 KTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQSDKIRTVQDAL 643
Query: 416 RLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GSQGSTKLHKSV 474
A E+++GY T + V + V ++ L +L+LHL RF Y + G KL K++
Sbjct: 644 ESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKTGGCQKLVKNI 700
Query: 475 RFPLQLVLGRDLL 487
+P+ L + R+LL
Sbjct: 701 EYPVDLEISRELL 713
>sp|A5PJS6|UBP10_BOVIN Ubiquitin carboxyl-terminal hydrolase 10 OS=Bos taurus GN=USP10
PE=2 SV=1
Length = 800
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 178/323 (55%), Gaps = 35/323 (10%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ + P P
Sbjct: 408 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKLIPLYSKVQRPCTSTPM 463
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L + +S+S
Sbjct: 464 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSE 519
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG---------------ESTSINGANTALVSLAEE 345
+ RQEDA+E+L FI++ +H+E+L L+ +S S+N E
Sbjct: 520 KGRQEDAEEYLGFILNGLHEEMLNLKKLLSPNNDKLTISNGPKSHSVNEDEQEEPGEGSE 579
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGP+NK++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S
Sbjct: 580 DEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQS 639
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 640 DKIRTVQDALESLVARESVQGYTTKTRQE---VEISRRVTLEKLPPVLVLHLKRFVYEKT 696
Query: 465 QGSTKLHKSVRFPLQLVLGRDLL 487
G KL K++ +P+ L + ++LL
Sbjct: 697 GGCQKLIKNIEYPVDLEISKELL 719
>sp|P52479|UBP10_MOUSE Ubiquitin carboxyl-terminal hydrolase 10 OS=Mus musculus GN=Usp10
PE=1 SV=3
Length = 792
Score = 190 bits (482), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 183/323 (56%), Gaps = 35/323 (10%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ L ++ P P
Sbjct: 400 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPM 455
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L + +S+S
Sbjct: 456 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTV----IKSSLSE 511
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG------ESTSI-NGANTALVSLAE--------E 345
+ RQEDA+E+L FI++ +H+E+L L+ E S+ NG + L+ E E
Sbjct: 512 KGRQEDAEEYLGFILNGLHEEMLSLKKLLSPTHEKHSVSNGPRSDLIEDEELEDTGKGSE 571
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGPKNK+++TR F+ + ++ IFGG ++SVV Q +K SAT+Q F L LDI S
Sbjct: 572 DEWEQVGPKNKTSITRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQLFFTLQLDIQS 631
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 632 DKIRTVQDALESLVARESVQGYTTKTKQE---VEVSRRVTLEKLPPVLVLHLKRFVYEKT 688
Query: 465 QGSTKLHKSVRFPLQLVLGRDLL 487
G KL K++ +P+ L + R+LL
Sbjct: 689 GGCQKLVKNIDYPVDLEISRELL 711
>sp|Q14694|UBP10_HUMAN Ubiquitin carboxyl-terminal hydrolase 10 OS=Homo sapiens GN=USP10
PE=1 SV=2
Length = 798
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 179/323 (55%), Gaps = 35/323 (10%)
Query: 189 INEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ--ELRTR-DIPKAGYPT 245
I++PV L PRGLIN GN C++NATLQAL++C P L++ L ++ P P
Sbjct: 406 IHKPVS----LQPRGLINKGNWCYINATLQALVACPPMYHLMKFIPLYSKVQRPCTSTPM 461
Query: 246 LTAFVGFVSDFD---TPSGGSSKKKNISVLDI--GRPFSPSMFEAVLKNFTPDVPNSISG 300
+ +FV +++F P + V DI G F P+ +L +S+S
Sbjct: 462 IDSFVRLMNEFTNMPVPPKPRQALGDKIVRDIRPGAAFEPTYIYRLLTVNK----SSLSE 517
Query: 301 RPRQEDAQEFLSFIMDQMHDELLKLQG---------------ESTSINGANTALVSLAEE 345
+ RQEDA+E+L FI++ +H+E+L L+ ++ S+N E
Sbjct: 518 KGRQEDAEEYLGFILNGLHEEMLNLKKLLSPSNEKLTISNGPKNHSVNEEEQEEQGEGSE 577
Query: 346 DEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405
DEWE VGP+NK++VTR F+ + ++ IFGG ++SVV Q +K SAT+QPF L LDI S
Sbjct: 578 DEWEQVGPRNKTSVTRQADFVQTPITGIFGGHIRSVVYQQSSKESATLQPFFTLQLDIQS 637
Query: 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY-GS 464
+ + T++DAL A E+++GY T + V + V ++ L +L+LHL RF Y +
Sbjct: 638 DKIRTVQDALESLVARESVQGYTTKTKQE---VEISRRVTLEKLPPVLVLHLKRFVYEKT 694
Query: 465 QGSTKLHKSVRFPLQLVLGRDLL 487
G KL K++ +P+ L + ++LL
Sbjct: 695 GGCQKLIKNIEYPVDLEISKELL 717
>sp|O94269|UBP3_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp3 PE=3 SV=1
Length = 512
Score = 148 bits (374), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 180/368 (48%), Gaps = 63/368 (17%)
Query: 151 SPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNL 210
SP+ K H + + + NSS+ E +++ P + + PRG IN+GN+
Sbjct: 89 SPVKKSHSVP---VPSDRSEKKSFNSSLGELIETYSPSLDAP----RPIQPRGFINTGNI 141
Query: 211 CFLNATLQALMSCSPFVQLLQELRTRDIP---KAGYPTLTAFVGFVSDFDTPSGGSSKKK 267
CF+N+ LQALM C PF LL+++ R +P + P + + DF
Sbjct: 142 CFMNSILQALMYCVPFYNLLKQI-NRMVPYNFERTTPLIESLTMLSRDF----------- 189
Query: 268 NISVLDIGRPFSPSMFEAVLKNFTPDVPNSIS-GRPR--------QEDAQEFLSFIMDQM 318
R +S F+ + P+V S + G PR QEDA+EFL+ +D++
Sbjct: 190 --------REYS-EKFDLQGDSILPEVVYSATKGNPRFEMLQTGEQEDAEEFLNLFLDEL 240
Query: 319 HDELLK------LQGESTS-------INGANTALVSL-----AEEDEWETVGPKNKSAVT 360
H+E ++ L+ + + NG + L S E W VG K +
Sbjct: 241 HEEFVRERRHYLLKNDERNPKSDIKISNGIKSGLDSFDDQSSVEASGWTEVGKNKKPVIA 300
Query: 361 RTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSA 420
R+ + S +S IFGGQL+S ++ + S ++PF L LDI +E +H++ DAL +A
Sbjct: 301 RSATVERSPISQIFGGQLRSTLRVPSARDSVLLEPFQPLQLDIQAEDIHSVIDALEHMTA 360
Query: 421 PENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST-KLHKSVRFPLQ 479
PE L + SS GN VTA K + I++L +LILHL RF Y + G T K +K + +P +
Sbjct: 361 PEILPEWH-SSKGN---VTATKQMYIESLPPVLILHLKRFFYEASGGTQKNYKPIAYPAR 416
Query: 480 LVLGRDLL 487
L + +++
Sbjct: 417 LSIPQNVF 424
>sp|O96612|UBPB_DICDI Ubiquitin hydrolase B OS=Dictyostelium discoideum GN=ubpB PE=1 SV=1
Length = 451
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/196 (42%), Positives = 116/196 (59%), Gaps = 14/196 (7%)
Query: 296 NSISGRPRQEDAQEFLSFIMDQMHDELLKL------QGESTSINGANTALVSLAEEDEWE 349
NS+ Q+DAQEFL F++D +H+E L L E +T++V +D WE
Sbjct: 191 NSLPQTICQQDAQEFLVFLLDLIHEEFLTLIKDIDIPKEDDKSTPTSTSIV----DDNWE 246
Query: 350 TVGPKNKSAV-TRTQSFLP-SALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEA 407
VG K K+A+ T +Q LP + +S IF G L+S G+K S TV+PF LHLDI E
Sbjct: 247 VVGKKGKTAIITNSQQELPKTPISQIFSGVLRSSFNRTGSKESITVEPFYCLHLDIRPEE 306
Query: 408 VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGS 467
++++EDAL+ F PE +EGY T ST ++A KS ++L +ILI+H RF++ S S
Sbjct: 307 INSLEDALKFFMKPEIIEGY-TCSTKKIE-ISASKSWSFESLPRILIVHFKRFAFESDTS 364
Query: 468 TKLHKSVRFPLQLVLG 483
KL K +RFP QL L
Sbjct: 365 KKLDKLIRFPTQLSLS 380
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 3/56 (5%)
Query: 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAG-YPTLTAFVGFVSDF 256
RGLIN+ N CF+N LQ+L C F+++++ L D+ G YPTL +F F +++
Sbjct: 19 RGLINTSNTCFMNVILQSLTGCQLFLRVIKNL--SDLEDLGKYPTLHSFNQFYTEY 72
>sp|Q01477|UBP3_YEAST Ubiquitin carboxyl-terminal hydrolase 3 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP3 PE=1 SV=1
Length = 912
Score = 113 bits (282), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/341 (29%), Positives = 149/341 (43%), Gaps = 81/341 (23%)
Query: 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD----IPKAGYPTLTAFVG 251
V ++PRG+IN N+CF+++ LQ L+ C PF+ ++ L TR+ + + L A +
Sbjct: 454 VHSIIPRGIINRANICFMSSVLQVLLYCKPFIDVINVLSTRNTNSRVGTSSCKLLDACLT 513
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPS---------MFE--AVLKNFTPD-VPNSIS 299
FD + +KK + D + S F+ A PD ++S
Sbjct: 514 MYKQFDKET---YEKKFLENADDAEKTTESDAKKSSKSKSFQHCATADAVKPDEFYKTLS 570
Query: 300 GRPR--------QEDAQEFLSFIMDQMHDEL----------------------------- 322
P+ QEDA+EFL+ ++DQ+H+EL
Sbjct: 571 TIPKFKDLQWGHQEDAEEFLTHLLDQLHEELISAIDGLTDNEIQNMLQSINDEQLKVFFI 630
Query: 323 --LKLQGESTSINGANTALVSL-----------AEEDEWETV------GPKNKSAVTRTQ 363
L G++ I A+ L L EE+ W V G K K+A RT
Sbjct: 631 RNLSRYGKAEFIKNASPRLKELIEKYGVINDDSTEENGWHEVSGSSKRGKKTKTAAKRTV 690
Query: 364 SFLPSALSDIFGGQLKSVVKAQGNKASA--TVQPFLLLHLDIYSEAVHTIEDALRLFSAP 421
+PS +S +FGGQ +SV+ NK S T+ PF + LDI V+ +E A + FS
Sbjct: 691 EIVPSPISKLFGGQFRSVLDIPNNKESQSITLDPFQTIQLDISDAGVNDLETAFKKFSEY 750
Query: 422 ENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462
E L SS+GN V AKK I L ++L++ RFS+
Sbjct: 751 ELLPF--KSSSGND--VEAKKQTFIDKLPQVLLIQFKRFSF 787
>sp|Q9FPS9|UBP15_ARATH Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana
GN=UBP15 PE=2 SV=2
Length = 924
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 125/290 (43%), Gaps = 58/290 (20%)
Query: 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFV-QLLQELRTRDIPKAGYPTLTAFVGFVS 254
V DL PRGL+N GN C+ NA LQ+L P V LL+ +R + + V
Sbjct: 432 VFDLSPRGLVNCGNSCYANAVLQSLTCTKPLVAYLLRRSHSRSCSGKDWCLMCELEQHV- 490
Query: 255 DFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFI 314
+ + + G P S S + +++ + G QEDA EFL +
Sbjct: 491 --------------MMLRESGGPLSASRILSHMRSINCQI-----GDGSQEDAHEFLRLL 531
Query: 315 MDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIF 374
+ M L+ G T ++ P+ + + + +F
Sbjct: 532 VASMQSICLERLGGETKVD-------------------PRLQET---------TLVQHMF 563
Query: 375 GGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTS 430
GG+L+S VK + + S + + L L+IY V +++DAL F+ PE+L+G YR S
Sbjct: 564 GGRLRSKVKCLRCDHESERYENIMDLTLEIYG-WVESLQDALTQFTRPEDLDGENMYRCS 622
Query: 431 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQL 480
AG V A+K + I IL + L RF G G K++K + FP L
Sbjct: 623 RC--AGYVRARKELSIHEAPNILTIVLKRFQEGRYG--KINKCISFPEML 668
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 OS=Gallus gallus GN=USP2
PE=2 SV=1
Length = 357
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 123/287 (42%), Gaps = 40/287 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDI---PKAGYPTLTAFVGFVSDFDT 258
GL N GN CF+N+ LQ L + LQ RD+ + ++ F + T
Sbjct: 20 GLRNLGNTCFMNSILQCLSNTKELRDYCLQNQYLRDLNNNSRMRTALMSEFAKLIQLLWT 79
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
S S SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 80 SSPNDS-------------VSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 121
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H E+ ++ AN + +DE K++ R Q S +SD+F GQL
Sbjct: 122 HGEVNRVLVRPR----ANADTLDHLPDDE------KSRQMWRRYQEREDSRVSDLFVGQL 171
Query: 379 KS-VVKAQGNKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEGYRTSSTG 433
KS + ++ S PF L L I Y E T+ D LRLF+ + L+G +
Sbjct: 172 KSSLTCSECGYCSTAFDPFWDLSLPIPKKGYGEV--TLMDCLRLFTKEDVLDGDEKPTCC 229
Query: 434 NAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
T K IQ KIL+LHL RFS ++KL V FPL+
Sbjct: 230 RCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRASKLTTFVNFPLK 276
>sp|Q2KHV7|UBP2_BOVIN Ubiquitin carboxyl-terminal hydrolase 2 OS=Bos taurus GN=USP2 PE=2
SV=1
Length = 606
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 124/287 (43%), Gaps = 40/287 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQL-LQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ + A + +F
Sbjct: 269 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYLRDLSHSS----RAHTALMEEF----- 319
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 320 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 370
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ S NT + +DE K + + S + D+F GQL
Sbjct: 371 HNEVNRVIARPKS----NTENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 420
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 421 KSSLTCTDCGYCSTVFDPFWDLSLPITKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 478
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
K IQ KIL+LHL RFS ++KL V FPL+
Sbjct: 479 RCRARKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTAFVNFPLR 525
>sp|O88623|UBP2_MOUSE Ubiquitin carboxyl-terminal hydrolase 2 OS=Mus musculus GN=Usp2
PE=1 SV=2
Length = 613
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 126/287 (43%), Gaps = 40/287 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQL-LQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ G+ T +A + +F
Sbjct: 276 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL---GH-TSSAHTALMEEF----- 326
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 327 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFMGY-----NQQDAQEFLRFLLDGL 377
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ + L L +E+ K + + S + D+F GQL
Sbjct: 378 HNEVNRVAARP---KASPETLDHLPDEE-------KGRQMWRKYLEREDSRIGDLFVGQL 427
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 428 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDILDGDEKPTCC 485
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
K +Q KIL+LHL RFS ++KL V FPL+
Sbjct: 486 RCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLR 532
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 OS=Mus musculus GN=Usp8
PE=1 SV=2
Length = 1080
Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 119/283 (42%), Gaps = 33/283 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++N+ LQ L + + DI ++ +G + G
Sbjct: 740 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 793
Query: 262 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
K L G R SP F+ + S Q+D+QE L F+MD +H
Sbjct: 794 IIMK-----ALWTGQYRYISPKDFKVTIGKINDQFAGS-----SQQDSQELLLFLMDGLH 843
Query: 320 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
++L K N L L A E W+ N+S + +F GQ
Sbjct: 844 EDLNKADNRKRHKEENNEHLDDLQAAEHAWQKHKQLNESIIVA-----------LFQGQF 892
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 436
KS V+ + S T + F+ L L + S + T++D LRLFS E L + R +
Sbjct: 893 KSTVQCLTCRRRSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 952
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
+ K ++I L +L++HL RFSY + KL SV FPL+
Sbjct: 953 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLE 995
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 OS=Homo sapiens GN=USP2
PE=1 SV=2
Length = 605
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 123/287 (42%), Gaps = 40/287 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQL-LQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ A V +F
Sbjct: 268 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGS----NAHTALVEEF----- 318
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 319 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 369
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ S N + +DE K + + S + D+F GQL
Sbjct: 370 HNEVNRVTLRPKS----NPENLDHLPDDE------KGRQMWRKYLEREDSRIGDLFVGQL 419
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 420 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 477
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
G K IQ KIL+LHL RFS ++KL V FPL+
Sbjct: 478 RCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLR 524
>sp|Q9UK80|UBP21_HUMAN Ubiquitin carboxyl-terminal hydrolase 21 OS=Homo sapiens GN=USP21
PE=1 SV=1
Length = 565
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 134/303 (44%), Gaps = 47/303 (15%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ--LLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALVS-------LAEEDEWETVGPKN---KSAVTRTQSFLPS 368
H E+ + +G AN + S L EE E N K + R S
Sbjct: 314 HLEINR-RGRRAPPILANGPVPSPPRRGGALLEEPELSDDDRANLMWKRYLERED----S 368
Query: 369 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 423
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 369 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEE 428
Query: 424 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-L 480
LE T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 429 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRL 487
Query: 481 VLG 483
LG
Sbjct: 488 SLG 490
>sp|Q5U349|UBP2_RAT Ubiquitin carboxyl-terminal hydrolase 2 OS=Rattus norvegicus
GN=Usp2 PE=1 SV=1
Length = 618
Score = 85.5 bits (210), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 40/287 (13%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQL-LQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF+N+ LQ L + LQ L RD+ G+ T +A + +F
Sbjct: 281 GLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDL---GH-TSSAHTALMEEF----- 331
Query: 262 GSSKKKNISVLDIGRP---FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
K I + P SPS F+ ++ + P Q+DAQEFL F++D +
Sbjct: 332 ----AKLIQTIWTSSPNDVVSPSEFKTQIQRYAPRFVGY-----NQQDAQEFLRFLLDGL 382
Query: 319 HDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
H+E+ ++ + +L L +E+ K + + S + D+F GQL
Sbjct: 383 HNEVNRVAARP---KPSPESLDHLPDEE-------KGRQMWRKYLEREDSRIGDLFVGQL 432
Query: 379 KSVVKAQGNKASATV-QPFLLLHLDI----YSEAVHTIEDALRLFSAPENLEG-YRTSST 432
KS + +TV PF L L I Y E T+ D +RLF+ + L+G + +
Sbjct: 433 KSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEV--TLMDCMRLFTKEDVLDGDEKPTCC 490
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
K +Q KIL+LHL RFS ++KL V FPL+
Sbjct: 491 RCRARKRCIKKFSVQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLR 537
>sp|Q2KJ72|UBP21_BOVIN Ubiquitin carboxyl-terminal hydrolase 21 OS=Bos taurus GN=USP21
PE=2 SV=1
Length = 565
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 97/302 (32%), Positives = 134/302 (44%), Gaps = 45/302 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPF--VQLLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNALLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV------SLAEEDEWETVGPKN---KSAVTRTQSFLPSA 369
H E+ + + I ++ A +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASSPAPHPPRLGGALLEEPELSDDDRANLMWKRYLERED----SK 369
Query: 370 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENL 424
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E L
Sbjct: 370 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFNLFTKEEEL 429
Query: 425 EGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHK-SVRFPLQ-LV 481
E T + K + +Q +IL+LHL RFS S+GS K V FPLQ L
Sbjct: 430 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFS-ASRGSIKKSSVGVDFPLQRLS 488
Query: 482 LG 483
LG
Sbjct: 489 LG 490
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 OS=Homo sapiens GN=USP8 PE=1
SV=1
Length = 1118
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 122/283 (43%), Gaps = 33/283 (11%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL-QELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN C++N+ LQ L + + DI ++ +G + G
Sbjct: 778 GLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSN------LLGHKGEVAEEFG 831
Query: 262 GSSKKKNISVLDIG--RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMH 319
K L G R SP F+ + + + +G Q+D+QE L F+MD +H
Sbjct: 832 IIMK-----ALWTGQYRYISPKDFKITIGK----INDQFAGYS-QQDSQELLLFLMDGLH 881
Query: 320 DELLKLQGESTSINGANTALVSL-AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQL 378
++L K N L A E W+ N+S + +F GQ
Sbjct: 882 EDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESIIVA-----------LFQGQF 930
Query: 379 KSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAG 436
KS V+ +K S T + F+ L L + S + T++D LRLFS E L + R +
Sbjct: 931 KSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRA 990
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ 479
+ K ++I L +L++HL RFSY + KL SV FPL+
Sbjct: 991 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLE 1033
>sp|B2GUX4|UBP21_RAT Ubiquitin carboxyl-terminal hydrolase 21 OS=Rattus norvegicus
GN=Usp21 PE=2 SV=1
Length = 565
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 128/301 (42%), Gaps = 43/301 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ--LLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV------SLAEEDEWETVGPKN---KSAVTRTQSFLPSA 369
H E+ + + I + +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASGPVPSPPRRGGALHEEPELSDDDRANLMWKRYLERED----SK 369
Query: 370 LSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPENL 424
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E L
Sbjct: 370 IVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEEL 429
Query: 425 EGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVL 482
E T + K + +Q +IL+LHL RFS K V FPLQ L L
Sbjct: 430 ESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLSL 489
Query: 483 G 483
G
Sbjct: 490 G 490
>sp|Q9QZL6|UBP21_MOUSE Ubiquitin carboxyl-terminal hydrolase 21 OS=Mus musculus GN=Usp21
PE=1 SV=1
Length = 566
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 128/302 (42%), Gaps = 44/302 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ--LLQELRTRDIPKAGYPT-LT-AFVGFVSDFDT 258
GL N GN CFLNA LQ L S P L ++ R +++P G LT AF +
Sbjct: 213 GLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFR-QEVPGGGRAQELTEAFADVIGALWH 271
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
P D +P+ F AV + + P S SG Q+DAQEFL +M+++
Sbjct: 272 P-------------DSCEAVNPTRFRAVFQKYVP----SFSGY-SQQDAQEFLKLLMERL 313
Query: 319 HDELLKLQGESTSINGANTALV-------SLAEEDEWETVGPKN---KSAVTRTQSFLPS 368
H E+ + + I + +L EE E N K + R S
Sbjct: 314 HLEINRRGRRAPPILASGPVPSPPRRGGGALHEEPELSDDDRANLMWKRYLERED----S 369
Query: 369 ALSDIFGGQLKSVVKAQG-NKASATVQPFLLLHLDI----YSEAVHTIEDALRLFSAPEN 423
+ D+F GQLKS +K Q S T + F L L I ++ ++ D LF+ E
Sbjct: 370 KIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDCFSLFTKEEE 429
Query: 424 LEGYRTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LV 481
LE T + K + +Q +IL+LHL RFS K V FPLQ L
Sbjct: 430 LESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSTSRGSIKKSSVGVDFPLQRLS 489
Query: 482 LG 483
LG
Sbjct: 490 LG 491
>sp|O60139|UBP4_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 4
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp4 PE=1 SV=2
Length = 593
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 136/325 (41%), Gaps = 66/325 (20%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCS----PFVQ---LLQELRTRDIPKAGYPTLT 247
S ++ P GL N GN C++N LQ L +C P +Q LLQ + T++ G +
Sbjct: 220 SYENYQPIGLTNLGNTCYMNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITS 279
Query: 248 AFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDA 307
AF + G R SP F ++++ D SI G Q DA
Sbjct: 280 AFFSLLQSVLLNHG-------------QRSISPRNFLEIVQSLNRDF--SIDG---QCDA 321
Query: 308 QEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED---------------EWETVG 352
QEFL+F +D++H++L + N + + + L E+ EW
Sbjct: 322 QEFLNFFLDKLHEDL--------NSNASRSPIAPLTEDQLSAREELPLSHFSHIEWNLHL 373
Query: 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPF--LLLHLDIYSEAVH 409
NKS V F GQL S + + S T PF L + +D S V
Sbjct: 374 RSNKSIVVNN-----------FVGQLCSRTQCMTCGRTSTTFAPFTSLAIPIDDVSHVV- 421
Query: 410 TIEDALRLFSAPENLEGYRTSSTGNAGV-VTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++++ L FSAPE L+G+ V +AKK + I L + LI+ + RF G
Sbjct: 422 SLQECLLKFSAPELLQGHDGWHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRK 481
Query: 469 KLHKSVRFPLQLVLGRDLLVTPSAE 493
K+ + LQ + +LV PS +
Sbjct: 482 KIDTPLGLSLQ--IPSKMLVPPSFQ 504
>sp|Q91W36|UBP3_MOUSE Ubiquitin carboxyl-terminal hydrolase 3 OS=Mus musculus GN=Usp3
PE=2 SV=1
Length = 520
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 142/322 (44%), Gaps = 55/322 (17%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAGYPTLTAFVG 251
S + GL N GN CF+NA LQ+L + F +EL R+ AG T
Sbjct: 152 STTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKTAGRRT------ 205
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPD---------VPNSISGRP 302
+ T S G S N+S+++ R ++++ F+P+ +PN G
Sbjct: 206 ----YHTRSQGDS---NVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN-FRGY- 256
Query: 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362
+Q+DA EF+ +++D +H L+LQG NG + + ++ +E+ T+ NK +
Sbjct: 257 QQQDAHEFMRYLLDHLH---LELQG---GFNGVSRS--AILQEN--STLSASNKCCINGA 306
Query: 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVH 409
+ ++ IFGG L++ V S PFL L LDI S+ V
Sbjct: 307 ----STVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVC 362
Query: 410 TIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++ D LR F+ E L E + K IQ L K L LHL RF + +
Sbjct: 363 SLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTAYLRN 422
Query: 469 KLHKSVRFPLQLVLGRDLLVTP 490
K+ V+FPL+ + + L+ P
Sbjct: 423 KVDTYVQFPLRGLDMKCYLLEP 444
>sp|Q9Y6I4|UBP3_HUMAN Ubiquitin carboxyl-terminal hydrolase 3 OS=Homo sapiens GN=USP3
PE=1 SV=2
Length = 520
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/322 (27%), Positives = 142/322 (44%), Gaps = 55/322 (17%)
Query: 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL---RTRDIPKAGYPTLTAFVG 251
S + GL N GN CF+NA LQ+L + F +EL R+ AG T
Sbjct: 152 STTAICATGLRNLGNTCFMNAILQSLSNIEQFCCYFKELPAVELRNGKTAGRRT------ 205
Query: 252 FVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPD---------VPNSISGRP 302
+ T S G + N+S+++ R ++++ F+P+ +PN G
Sbjct: 206 ----YHTRSQGDN---NVSLVEEFRKTLCALWQGSQTAFSPESLFYVVWKIMPN-FRGY- 256
Query: 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362
+Q+DA EF+ +++D +H L+LQG NG + + ++ +E+ T+ NK +
Sbjct: 257 QQQDAHEFMRYLLDHLH---LELQG---GFNGVSRS--AILQEN--STLSASNKCCINGA 306
Query: 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE------------AVH 409
+ ++ IFGG L++ V S PFL L LDI S+ V
Sbjct: 307 S----TVVTAIFGGILQNEVNCLICGTESRKFDPFLDLSLDIPSQFRSKRSKNQENGPVC 362
Query: 410 TIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGST 468
++ D LR F+ E L E + K IQ L K+L LHL RF + +
Sbjct: 363 SLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKVLCLHLKRFHWTAYLRN 422
Query: 469 KLHKSVRFPLQLVLGRDLLVTP 490
K+ V FPL+ + + L+ P
Sbjct: 423 KVDTYVEFPLRGLDMKCYLLEP 444
>sp|A5WWB0|UBP46_DANRE Ubiquitin carboxyl-terminal hydrolase 46 OS=Danio rerio GN=usp46
PE=3 SV=2
Length = 370
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 126/287 (43%), Gaps = 43/287 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + + + K T A D
Sbjct: 36 GLVNFGNTCYCNSVLQALYFCRPFRENVLAYKVQQKKKENLLTCLA--------DLFHSI 87
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD-- 320
+++KK + V+ P F + L+ N + Q+DA EFL+++++ + D
Sbjct: 88 ATQKKKVGVI------PPKKFISRLRK-----ENDLFDNYMQQDAHEFLNYLLNTVADIL 136
Query: 321 -ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK 379
E K + ++ + TA+ + +T +NK P+ + +IF G L
Sbjct: 137 QEERKQEKQNGRLKNNGTAIAT-------DTEPEQNKID--------PTWVHEIFQGTLT 181
Query: 380 SVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGV 437
+ + S+ + FL L +D+ E +I LR FS E L Y+
Sbjct: 182 NETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEYKYYCEMCCSK 239
Query: 438 VTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
A+K ++++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 240 QEAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRL 286
>sp|Q9SB51|UBP16_ARATH Ubiquitin carboxyl-terminal hydrolase 16 OS=Arabidopsis thaliana
GN=UBP16 PE=2 SV=1
Length = 1008
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 119/291 (40%), Gaps = 58/291 (19%)
Query: 198 DLLPRGLINSGNLCFLNATLQALMSCSPFV-QLLQELRTRDIPKAGYPTLTAFVGFVSDF 256
+ P GLIN GN CF N Q LM P LQ+ +R K F V
Sbjct: 538 EFQPCGLINVGNSCFANVVFQCLMFTPPLTTYFLQQFHSRACTKKEQCFTCGFEKLV--- 594
Query: 257 DTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMD 316
+ + P SP+ + L+N G ++EDA EFL F++D
Sbjct: 595 ------------VKAKEEKSPLSPNGLLSQLQNI-----GIFLGNGKEEDAHEFLRFVVD 637
Query: 317 QMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGG 376
M +S I + + ++ ++ +G FGG
Sbjct: 638 TM---------QSVCIKASEYDMTKSSKLEDTTLIGL-------------------TFGG 669
Query: 377 QLKSVVKAQGNKASATVQPFLL-LHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSST 432
L+S +K + + ++ ++ L ++I + + T++DALR F+ E L+G YR S
Sbjct: 670 YLRSKIKCMKCQVKSELREKMMDLTVEIDGD-ISTLDDALRRFTRTEILDGENKYRCGSC 728
Query: 433 GNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 483
+ AKK +KI +L + L RF G G KL+K +RFP L L
Sbjct: 729 KS--YERAKKKLKITEPPNVLTIALKRFQAGKFG--KLNKLIRFPETLDLA 775
>sp|C0HB46|UBP12_SALSA Ubiquitin carboxyl-terminal hydrolase 12 OS=Salmo salar GN=usp12
PE=2 SV=1
Length = 372
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 141/335 (42%), Gaps = 58/335 (17%)
Query: 153 ISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCF 212
+SKF C NA+A I GS++ P +NE GL+N GN C+
Sbjct: 7 VSKFASFCTMG-----ANASALEKEI-GSEQFP---VNEHY--------FGLVNFGNTCY 49
Query: 213 LNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272
N+ LQAL C PF + + L R P+ LT D +++K+ + V+
Sbjct: 50 CNSVLQALYFCRPFREKI--LAYRSQPRRKENLLTCLA------DLFHSIANQKRKVGVI 101
Query: 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI 332
P F L+ N + Q+DA EFL+++++ + D LL+ + +
Sbjct: 102 ------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-LLQEERKQDKT 149
Query: 333 NGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSA-LSDIFGGQLKSVVKA-QGNKAS 390
NG A SL ++ P PS + +IF G L + + S
Sbjct: 150 NG-RLANGSLDSQNHNSNAPP-------------PSTWVHEIFQGTLTNETRCLTCETIS 195
Query: 391 ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTL 449
+ + FL L +D+ E +I LR FS E L Y+ A K ++++ L
Sbjct: 196 SKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKKL 253
Query: 450 SKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVL 482
IL LHL RF Y Q TKL V FPL+L L
Sbjct: 254 PMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRL 288
>sp|Q9SJA1|UBP19_ARATH Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana
GN=UBP19 PE=2 SV=2
Length = 672
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 83/292 (28%), Positives = 117/292 (40%), Gaps = 62/292 (21%)
Query: 199 LLPRGLINSGNLCFLNATLQALMSCSPFV-QLLQELRTRDIPKAGYPTLTAFVGFVSDFD 257
+ P GL N GN CF N LQ L P V LL+ R+ + + L F +
Sbjct: 171 MAPCGLTNCGNSCFANVVLQCLSWTRPLVAYLLERGHKRECRRNDWCFLCEFENHLD--- 227
Query: 258 TPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQ 317
+ N S PFSP + L N ++ G RQEDA E + F +D
Sbjct: 228 --------RANYSRF----PFSPMNIISRLPNIGGNL-----GYGRQEDAHELMRFAIDM 270
Query: 318 MHDELLKLQGESTSINGANTALVSLAEEDEW--ETVGPKNKSAVTRTQSFLPSALSDIFG 375
M L DE+ E V P T Q IFG
Sbjct: 271 MQSVCL----------------------DEFGGEKVVPPRAQETTLIQY--------IFG 300
Query: 376 GQLKSVVKAQG-NKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSS 431
G L+S V+ + S + + L ++I+ +AV ++E+ L F+A E L+G Y+
Sbjct: 301 GLLQSQVQCTACSNVSDQYENMMDLTVEIHGDAV-SLEECLDQFTAKEWLQGDNLYKCDR 359
Query: 432 TGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLG 483
+ V A K + I+ IL + L RF G G KL+K + FP LG
Sbjct: 360 CDD--YVKACKRLSIRCAPNILTIALKRFQGGRFG--KLNKRISFPETFDLG 407
>sp|A4FUN7|UBP12_DANRE Ubiquitin carboxyl-terminal hydrolase 12A OS=Danio rerio GN=usp12a
PE=2 SV=1
Length = 371
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 141/336 (41%), Gaps = 61/336 (18%)
Query: 153 ISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCF 212
+SKF C NA+A I GS++ P +NE GL+N GN C+
Sbjct: 7 VSKFASFCTMG-----ANASALEKEI-GSEQFP---VNEHY--------FGLVNFGNTCY 49
Query: 213 LNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272
N+ LQAL C PF + + L R P+ LT D +++K+ + V+
Sbjct: 50 CNSVLQALYFCRPFREKI--LAYRSQPRRKENLLTCLA------DLFHSIANQKRKVGVI 101
Query: 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI 332
P F L+ N + Q+DA EFL+++++ + D LL+ + +
Sbjct: 102 ------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-LLQEERKQDKQ 149
Query: 333 NG--ANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKA 389
NG AN L S N S T + + +IF G L + +
Sbjct: 150 NGKLANGTLDS-----------QNNNSTPPST-----TWVHEIFQGTLTNETRCLTCETI 193
Query: 390 SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQT 448
S+ + FL L +D+ E +I LR FS E L Y+ A K ++++
Sbjct: 194 SSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMRVKK 251
Query: 449 LSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVL 482
L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 252 LPMILALHLKRFKYMEQLQRYTKLSYRVVFPLELRL 287
>sp|Q9D9M2|UBP12_MOUSE Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12
PE=2 SV=2
Length = 370
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 123/284 (43%), Gaps = 41/284 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG L + ++E P P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNG---RLRNGDVDNEDNNSTPD------------PTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
K +K++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 243 HKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 286
>sp|A5D9H7|UBP12_BOVIN Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12
PE=2 SV=1
Length = 369
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 119/284 (41%), Gaps = 42/284 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKESLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG P + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR----------------LPNGNIDSENNSTPDPTWVHEIFQGTLTNET 183
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 184 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 241
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
K +K++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 242 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 285
>sp|O75317|UBP12_HUMAN Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12
PE=1 SV=2
Length = 370
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 119/284 (41%), Gaps = 41/284 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKESLLTCLA------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D L
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIADIL 140
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
E N L + ++E P P+ + +IF G L +
Sbjct: 141 ----QEERKQEKQNGRLPNGNIDNENNNSTPD------------PTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
K +K++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 286
>sp|Q67XW5|UBP18_ARATH Ubiquitin carboxyl-terminal hydrolase 18 OS=Arabidopsis thaliana
GN=UBP18 PE=2 SV=2
Length = 631
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 121/292 (41%), Gaps = 62/292 (21%)
Query: 198 DLLPRGLINSGNLCFLNATLQALMSCSPFV-QLLQELRTRDIPKAGYPTLTAFVGFVSDF 256
+L P GL+N GN CF N LQ L P V LL++ R+ + + F+ +F
Sbjct: 164 ELAPCGLMNCGNSCFANVILQCLSWTRPLVAYLLEKGHKRECMRNDW-------CFLCEF 216
Query: 257 DTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMD 316
T +S+ + PFSP + L N + G RQEDA EF+ + +D
Sbjct: 217 QTHVERASQSRF--------PFSPMNIISRLTNIGGTL-----GYGRQEDAHEFMRYAID 263
Query: 317 QMHDELLKLQGESTSINGANTALVSLAEEDEW--ETVGPKNKSAVTRTQSFLPSALSDIF 374
M L DE+ E + P T Q IF
Sbjct: 264 MMQSVCL----------------------DEFGGEKIVPPRSQETTLIQY--------IF 293
Query: 375 GGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTS 430
GG L+S V+ N S + + L ++++ +A ++E+ L F+A E L G Y+
Sbjct: 294 GGLLQSQVQCTVCNHVSDQYENMMDLIVEMHGDA-GSLEECLDQFTAEEWLHGDNMYKCD 352
Query: 431 STGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVL 482
+ V A K + I+ IL + L R+ G G KL+K + FP L L
Sbjct: 353 RCSD--YVKACKRLTIRRAPNILTIALKRYQGGRYG--KLNKRISFPETLDL 400
>sp|Q5RBQ4|UBP46_PONAB Ubiquitin carboxyl-terminal hydrolase 46 OS=Pongo abelii GN=USP46
PE=2 SV=1
Length = 366
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 49/288 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + + + K T A D
Sbjct: 36 GLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLA--------DLFHSI 87
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F + L+ N + Q+DA EFL+++++ + D +
Sbjct: 88 ATQKKKVGVI------PPKKFISRLRK-----ENDLFDNYMQQDAHEFLNYLLNTIAD-I 135
Query: 323 LKLQGESTSING--ANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
L+ + + NG N + AE NK +T + +IF G L +
Sbjct: 136 LQEEKKQEKQNGKLKNGNMNEPAE---------NNKPELT--------WVHEIFQGTLTN 178
Query: 381 VVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL---EGYRTSSTGNAG 436
+ S+ + FL L +D+ E +I LR FS E L + Y + +
Sbjct: 179 ETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 236
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
A+K ++++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 237 --EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRL 282
>sp|P62069|UBP46_MOUSE Ubiquitin carboxyl-terminal hydrolase 46 OS=Mus musculus GN=Usp46
PE=1 SV=1
Length = 366
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 49/288 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + + + K T A D
Sbjct: 36 GLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLA--------DLFHSI 87
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F + L+ N + Q+DA EFL+++++ + D +
Sbjct: 88 ATQKKKVGVI------PPKKFISRLRK-----ENDLFDNYMQQDAHEFLNYLLNTIAD-I 135
Query: 323 LKLQGESTSING--ANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
L+ + + NG N + AE NK +T + +IF G L +
Sbjct: 136 LQEEKKQEKQNGKLKNGNMNEPAE---------NNKPELT--------WVHEIFQGTLTN 178
Query: 381 VVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL---EGYRTSSTGNAG 436
+ S+ + FL L +D+ E +I LR FS E L + Y + +
Sbjct: 179 ETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 236
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
A+K ++++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 237 --EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRL 282
>sp|P62068|UBP46_HUMAN Ubiquitin carboxyl-terminal hydrolase 46 OS=Homo sapiens GN=USP46
PE=1 SV=1
Length = 366
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 126/288 (43%), Gaps = 49/288 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + + + K T A D
Sbjct: 36 GLVNFGNTCYCNSVLQALYFCRPFRENVLAYKAQQKKKENLLTCLA--------DLFHSI 87
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F + L+ N + Q+DA EFL+++++ + D +
Sbjct: 88 ATQKKKVGVI------PPKKFISRLRK-----ENDLFDNYMQQDAHEFLNYLLNTIAD-I 135
Query: 323 LKLQGESTSING--ANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
L+ + + NG N + AE NK +T + +IF G L +
Sbjct: 136 LQEEKKQEKQNGKLKNGNMNEPAE---------NNKPELT--------WVHEIFQGTLTN 178
Query: 381 VVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL---EGYRTSSTGNAG 436
+ S+ + FL L +D+ E +I LR FS E L + Y + +
Sbjct: 179 ETRCLNCETVSSKDEDFLDLSVDV--EQNTSITHCLRDFSNTETLCSEQKYYCETCCSKQ 236
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
A+K ++++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 237 --EAQKRMRVKKLPMILALHLKRFKYMEQLHRYTKLSYRVVFPLELRL 282
>sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana
GN=UBP3 PE=1 SV=1
Length = 371
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 138/312 (44%), Gaps = 36/312 (11%)
Query: 194 KSVKDLLPRG-----LINSGNLCFLNATLQALMSCSPFVQLLQELRT--RDIPKAGYPTL 246
K++ D P G N GN C+ N+ LQAL C PF + L E T + + A +
Sbjct: 10 KALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCVPFREQLLEYYTSNKSVADAEENLM 69
Query: 247 TAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQED 306
T D S SS+KK V+ +P F LK N + +D
Sbjct: 70 TCLA------DLFSQISSQKKKTGVI------APKRFVQRLKK-----QNELFRSYMHQD 112
Query: 307 AQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFL 366
A EFL+++++++ D +L+ + ++T T+ S E+ P+ V + +
Sbjct: 113 AHEFLNYLLNEVVD-ILEKEAKATKTEH-ETSSSSSPEKIANGLKVPQANGVVHKEP--I 168
Query: 367 PSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLE 425
+ + +IF G L + + + +A + FL L LDI E +I L+ FS+ E L
Sbjct: 169 VTWVHNIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLH 226
Query: 426 GY-RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
+ + A+K +KI+ IL++HL RF Y Q KL V FPL+L L
Sbjct: 227 AEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKL 286
Query: 483 GRDLLVTPSAEV 494
V P A+V
Sbjct: 287 SNT--VEPYADV 296
>sp|Q5M981|UB12B_XENLA Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis
GN=usp12-b PE=2 SV=2
Length = 370
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 41/284 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLS------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG + N + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR---------------IPNGNIDNENNNNTPDPTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
K +K++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 286
>sp|Q52KZ6|UB12A_XENLA Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis
GN=usp12-a PE=2 SV=1
Length = 370
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 120/284 (42%), Gaps = 41/284 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL+N GN C+ N+ LQAL C PF + + L + P+ LT D
Sbjct: 40 GLVNFGNTCYCNSVLQALYFCRPFRE--KVLAYKSQPRKKENLLTCLS------DLFHSI 91
Query: 263 SSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDEL 322
+++KK + V+ P F L+ N + Q+DA EFL+++++ + D +
Sbjct: 92 ATQKKKVGVI------PPKKFITRLRK-----ENELFDNYMQQDAHEFLNYLLNTIAD-I 139
Query: 323 LKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382
L+ + + NG + N + P+ + +IF G L +
Sbjct: 140 LQEERKQEKQNGR---------------IPNGNIDNENNNSAPDPTWVHEIFQGTLTNET 184
Query: 383 KA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTA 440
+ S+ + FL L +D+ E +I LR FS E L Y+ A
Sbjct: 185 RCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEA 242
Query: 441 KKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVL 482
K +K++ L IL LHL RF Y Q TKL V FPL+L L
Sbjct: 243 HKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRL 286
>sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4 OS=Arabidopsis thaliana
GN=UBP4 PE=1 SV=2
Length = 365
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 128/307 (41%), Gaps = 53/307 (17%)
Query: 194 KSVKDLLPRG-----LINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTA 248
K++ D P G N GN C+ N+ LQAL C+PF + L E + A LT
Sbjct: 10 KALGDQFPEGERYFGFENFGNTCYCNSVLQALYFCAPFREQLLEHYANNKADAEENLLTC 69
Query: 249 FVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQ 308
D S SS+KK V+ +P F LK N + +DA
Sbjct: 70 LA------DLFSQISSQKKKTGVI------APKRFVQRLKK-----QNELFRSYMHQDAH 112
Query: 309 EFLSFIMDQMHDELLKLQGESTSING---------ANTALVSLAEEDEWETVGPKNKSAV 359
EFL+++++++ E+L+ + ++T + AN LA G + V
Sbjct: 113 EFLNYLLNEL-VEILEKETQATKADNETSSSPEKIANVLKAPLAN-------GVHKEPIV 164
Query: 360 TRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLF 418
T IF G L + + + +A + FL L LDI E +I L+ F
Sbjct: 165 TWVHK--------IFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNF 214
Query: 419 SAPENLEGY-RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVR 475
S+ E L + + A+K +KI+ IL++HL RF Y Q KL V
Sbjct: 215 SSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVV 274
Query: 476 FPLQLVL 482
FPL+L L
Sbjct: 275 FPLELKL 281
>sp|E1B9W9|UBP42_BOVIN Ubiquitin carboxyl-terminal hydrolase 42 OS=Bos taurus GN=USP42
PE=3 SV=1
Length = 1333
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 122/302 (40%), Gaps = 64/302 (21%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPG 171
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 172 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 209
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 210 -------QKACLNGSNK----LDRHTQATTL------------------VCQIFGGYLRS 240
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 241 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVNKALEQFVKPEQLDGENSYKCSKCKK-- 296
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQ 496
+V A K I S +L L L RF+ + G K+ K V++P L + R + P+ E +
Sbjct: 297 MVPASKRFTIHRSSNVLTLSLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 353
Query: 497 FL 498
++
Sbjct: 354 YV 355
>sp|Q9H9J4|UBP42_HUMAN Ubiquitin carboxyl-terminal hydrolase 42 OS=Homo sapiens GN=USP42
PE=1 SV=3
Length = 1324
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 122/302 (40%), Gaps = 64/302 (21%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 112 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQAHITQALSNPG 171
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 172 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 209
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 210 -------QKACLNGSN----KLDRHTQATTL------------------VCQIFGGYLRS 240
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 241 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVNKALEQFVKPEQLDGENSYKCSKCKK-- 296
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQ 496
+V A K I S +L L L RF+ + G K+ K V++P L + R + P+ E +
Sbjct: 297 MVPASKRFTIHRSSNVLTLSLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPIV 353
Query: 497 FL 498
++
Sbjct: 354 YV 355
>sp|B2RQC2|UBP42_MOUSE Ubiquitin carboxyl-terminal hydrolase 42 OS=Mus musculus GN=Usp42
PE=2 SV=1
Length = 1324
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 122/302 (40%), Gaps = 64/302 (21%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPG 170
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 171 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 208
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 209 -------QKACLNGSN----KLDRHTQATTL------------------VCQIFGGYLRS 239
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 240 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVTKALEQFVKPEQLDGENSYKCSKCKK-- 295
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQ 496
+V A K I S +L + L RF+ + G K+ K V++P L + R + P+ E +
Sbjct: 296 MVPASKRFTIHRSSNVLTISLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 352
Query: 497 FL 498
++
Sbjct: 353 YV 354
>sp|D3ZU96|UBP42_RAT Ubiquitin carboxyl-terminal hydrolase 42 OS=Rattus norvegicus
GN=Usp42 PE=3 SV=1
Length = 1325
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 122/302 (40%), Gaps = 64/302 (21%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQ-LLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSG 261
GL N GN CF NA LQ L P +L ++ G+ + ++ + G
Sbjct: 111 GLQNLGNTCFANAALQCLTYTPPLANYMLSHEHSKTCHAEGFCMMCTMQTHITQALSNPG 170
Query: 262 GSSKKKNISVLDIGRP-FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320
D+ +P F + + ++F QEDA EFL + +D M
Sbjct: 171 -----------DVIKPMFVINEMRRIARHFRFG---------NQEDAHEFLQYTVDAM-- 208
Query: 321 ELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKS 380
+ +NG+N L + T+ + IFGG L+S
Sbjct: 209 -------QKACLNGSN----KLDRHTQATTL------------------VCQIFGGYLRS 239
Query: 381 VVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAG 436
VK K S T P+L + L+I +A ++ AL F PE L+G Y+ S
Sbjct: 240 RVKCLNCKGVSDTFDPYLDITLEI--KAAQSVTKALEQFVKPEQLDGENSYKCSKCKK-- 295
Query: 437 VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQ 496
+V A K I S +L + L RF+ + G K+ K V++P L + R + P+ E +
Sbjct: 296 MVPASKRFTIHRSSNVLTISLKRFANFTGG--KIAKDVKYPEYLDI-RPYMSQPNGEPII 352
Query: 497 FL 498
++
Sbjct: 353 YV 354
>sp|P39944|UBP5_YEAST Ubiquitin carboxyl-terminal hydrolase 5 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UBP5 PE=1 SV=1
Length = 805
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 120/279 (43%), Gaps = 49/279 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGG 262
GL N GN C++N LQ L+ V++ + ++ F+ +FD+ G
Sbjct: 447 GLENIGNCCYMNCILQCLVGTHDLVRMFLD--------------NTYLNFI-NFDSSRGS 491
Query: 263 SSK-KKNISVL--DIGR------------PFSPSMFEAVLKNFTPDVPNSISGRPRQEDA 307
KN ++L ++ R P F+ + + P +S+ Q+D
Sbjct: 492 KGLLAKNFAILVNNMHRHGAFTPPNVRTIPVQTIQFKKICGHINPMYSDSM-----QQDC 546
Query: 308 QEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDE--WETVGPKNKSAVTRTQSF 365
QEF F++D +H++L + NG+ L L++E+E E + + SA+ +
Sbjct: 547 QEFCQFLLDGLHEDL--------NQNGSKKHLKQLSDEEERMREKMSIRKASALEWERFL 598
Query: 366 LP--SALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPE 422
L SA+ D+F GQ S ++ Q S T Q F +L + + I D R F+ E
Sbjct: 599 LTDFSAIIDLFQGQYASRLQCQVCEHTSTTYQTFSVLSVPVPRVKTCNILDCFREFTKCE 658
Query: 423 NL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRF 460
L + S + K +KI L K LI++L RF
Sbjct: 659 RLGVDEQWSCPKCLKKQPSTKQLKITRLPKKLIINLKRF 697
>sp|P34547|UBPX_CAEEL Probable ubiquitin carboxyl-terminal hydrolase 46 OS=Caenorhabditis
elegans GN=usp-46 PE=3 SV=3
Length = 426
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 54/309 (17%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQLL----QELRTRDIPKAGYPTLTAFVGFVSDFDT 258
GL+N GN C+ N+ +QAL C PF + + Q L+ K T A D
Sbjct: 28 GLVNFGNTCYCNSVIQALFFCRPFREKVLNYKQTLKKSGASKDNLVTCLA--------DL 79
Query: 259 PSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQM 318
+S+K+ + + +P F LK N + Q+DA EF +++++ +
Sbjct: 80 FHSIASQKRRVGTI------APKRFITKLKK-----ENELFDNYMQQDAHEFFNYLINTI 128
Query: 319 HDELLK--------------LQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQS 364
+ L++ L+ + ++N A A L DE T +N
Sbjct: 129 SETLIQEKIAEREKASRHGTLKKGNVTVNLA-PATAGLPRSDEKGT-SERNGGITVEGNE 186
Query: 365 FL-----PSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLF 418
FL + + +IF G L + + S+ + FL L +D+ E +I LR+F
Sbjct: 187 FLNKSDTTTWIHEIFQGILTNETRCLSCETVSSKDEDFLDLSIDV--EQNTSISHCLRVF 244
Query: 419 SAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKS 473
S E L G Y + + A+K ++I+ ++L LHL RF + TKL
Sbjct: 245 SETETLCGDQKYFCETCSSKQ--EAQKRMRIKKPPQLLALHLKRFKFVEPLNRHTKLSYR 302
Query: 474 VRFPLQLVL 482
V FPL+L L
Sbjct: 303 VVFPLELRL 311
>sp|B3LGK1|UBP4_YEAS1 Ubiquitin carboxyl-terminal hydrolase 4 OS=Saccharomyces cerevisiae
(strain RM11-1a) GN=DOA4 PE=3 SV=1
Length = 926
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 118/274 (43%), Gaps = 39/274 (14%)
Query: 203 GLINSGNLCFLNATLQALMSCSPFVQL-LQELRTRDI---PKAGYPTLTA--FVGFVSDF 256
GL N GN C++N +Q ++ Q+ L + + I K G + A F V
Sbjct: 563 GLENLGNSCYMNCIIQCILGTHELTQIFLDDSYAKHININSKLGSKGILAKYFARLVHMM 622
Query: 257 DTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMD 316
SKK P SP F+ + NS+ Q+D QEF F++D
Sbjct: 623 YKEQVDGSKK---------IPISPIKFKLACGSV-----NSLFKTASQQDCQEFCQFLLD 668
Query: 317 QMHDELLKLQGESTSINGANTALVSLAEEDE--WETVGPKNKSAVTRTQSFLP---SALS 371
+H++L + G+N L L++E E E + + S++ + FL S +
Sbjct: 669 GLHEDLNQC--------GSNPPLKELSQEAEARREKLSLRIASSI-EWERFLTTDFSVIV 719
Query: 372 DIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDI---YSEAVHTIEDALRLFSAPENLEGY 427
D+F GQ S +K + + S T QPF +L + I S TIED R F+ ENLE
Sbjct: 720 DLFQGQYASRLKCKVCSHTSTTYQPFTVLSIPIPKKNSRNNITIEDCFREFTKCENLEVD 779
Query: 428 RTSSTGNAGVVT-AKKSVKIQTLSKILILHLMRF 460
+ + K + I L + LI+HL RF
Sbjct: 780 EQWLCPHCEKRQPSTKQLTITRLPRNLIVHLKRF 813
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,779,854
Number of Sequences: 539616
Number of extensions: 7744917
Number of successful extensions: 15297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 130
Number of HSP's that attempted gapping in prelim test: 14790
Number of HSP's gapped (non-prelim): 518
length of query: 500
length of database: 191,569,459
effective HSP length: 122
effective length of query: 378
effective length of database: 125,736,307
effective search space: 47528324046
effective search space used: 47528324046
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)