Query 010812
Match_columns 500
No_of_seqs 261 out of 1491
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02668 Peptidase_C19L A subfa 100.0 7.2E-44 1.6E-48 364.1 20.9 233 203-500 1-249 (324)
2 cd02663 Peptidase_C19G A subfa 100.0 6.4E-44 1.4E-48 360.6 19.6 234 203-500 1-240 (300)
3 cd02660 Peptidase_C19D A subfa 100.0 1.4E-43 3.1E-48 362.0 22.1 248 202-500 1-276 (328)
4 KOG1865 Ubiquitin carboxyl-ter 100.0 1.8E-44 4E-49 371.9 15.5 247 198-499 105-354 (545)
5 COG5077 Ubiquitin carboxyl-ter 100.0 1.7E-44 3.6E-49 377.7 6.2 287 149-499 121-433 (1089)
6 cd02671 Peptidase_C19O A subfa 100.0 2E-42 4.4E-47 353.4 20.2 224 199-500 22-275 (332)
7 cd02657 Peptidase_C19A A subfa 100.0 4E-42 8.6E-47 348.0 20.2 236 203-500 1-244 (305)
8 COG5560 UBP12 Ubiquitin C-term 100.0 2.7E-43 5.8E-48 363.6 10.2 268 199-499 263-766 (823)
9 cd02664 Peptidase_C19H A subfa 100.0 1.4E-41 3.1E-46 347.5 19.3 208 203-487 1-215 (327)
10 cd02669 Peptidase_C19M A subfa 100.0 7.8E-42 1.7E-46 362.0 17.8 238 199-500 117-386 (440)
11 cd02658 Peptidase_C19B A subfa 100.0 3.4E-41 7.4E-46 342.2 20.5 230 203-480 1-247 (311)
12 cd02661 Peptidase_C19E A subfa 100.0 5.9E-41 1.3E-45 338.1 20.9 246 201-500 1-251 (304)
13 cd02667 Peptidase_C19K A subfa 100.0 3.4E-41 7.4E-46 337.4 17.3 197 203-500 1-205 (279)
14 cd02659 peptidase_C19C A subfa 100.0 1.6E-40 3.4E-45 340.4 20.4 239 200-500 1-255 (334)
15 COG5533 UBP5 Ubiquitin C-termi 100.0 1.5E-38 3.3E-43 305.0 12.3 271 197-499 67-359 (415)
16 cd02662 Peptidase_C19F A subfa 100.0 1.2E-35 2.5E-40 291.0 15.2 152 203-480 1-158 (240)
17 KOG1863 Ubiquitin carboxyl-ter 100.0 9E-36 1.9E-40 343.0 10.8 291 147-499 103-413 (1093)
18 KOG0944 Ubiquitin-specific pro 100.0 4.2E-34 9.1E-39 298.0 11.3 241 196-489 302-550 (763)
19 cd02666 Peptidase_C19J A subfa 100.0 1.9E-33 4.2E-38 287.4 8.4 211 201-487 1-244 (343)
20 KOG1868 Ubiquitin C-terminal h 100.0 5.8E-33 1.3E-37 298.9 11.0 273 196-500 296-591 (653)
21 KOG1866 Ubiquitin carboxyl-ter 100.0 3.9E-33 8.4E-38 292.4 4.1 234 195-489 89-329 (944)
22 cd02674 Peptidase_C19R A subfa 100.0 1.4E-31 3E-36 259.6 12.4 148 303-500 21-177 (230)
23 cd02665 Peptidase_C19I A subfa 100.0 2.1E-30 4.5E-35 249.9 10.2 138 304-480 22-159 (228)
24 PF00443 UCH: Ubiquitin carbox 100.0 1.3E-29 2.8E-34 248.5 14.3 202 201-500 1-214 (269)
25 COG5207 UBP14 Isopeptidase T [ 99.9 5.2E-28 1.1E-32 245.1 10.7 230 201-488 303-539 (749)
26 cd02257 Peptidase_C19 Peptidas 99.9 3.3E-27 7.1E-32 228.0 13.7 167 303-500 21-196 (255)
27 KOG1870 Ubiquitin C-terminal h 99.9 1.1E-27 2.4E-32 269.9 11.6 182 194-405 239-428 (842)
28 KOG1867 Ubiquitin-specific pro 99.9 2.2E-27 4.7E-32 251.4 12.6 257 197-499 157-430 (492)
29 cd02673 Peptidase_C19Q A subfa 99.9 6.6E-27 1.4E-31 229.2 11.9 158 300-500 29-187 (245)
30 KOG1871 Ubiquitin-specific pro 99.9 9.3E-27 2E-31 230.9 10.9 285 198-488 25-342 (420)
31 KOG4598 Putative ubiquitin-spe 99.9 6E-28 1.3E-32 251.2 0.5 208 195-488 81-296 (1203)
32 KOG1873 Ubiquitin-specific pro 99.9 2.6E-26 5.6E-31 242.1 9.9 176 199-403 203-399 (877)
33 PF13423 UCH_1: Ubiquitin carb 99.9 4.8E-25 1E-29 222.4 16.1 249 202-500 1-258 (295)
34 cd02672 Peptidase_C19P A subfa 99.9 3.2E-23 7E-28 205.7 14.4 190 199-500 13-216 (268)
35 KOG2026 Spindle pole body prot 99.9 3.1E-22 6.7E-27 198.0 13.5 224 200-488 133-374 (442)
36 KOG1864 Ubiquitin-specific pro 99.8 2.7E-21 5.9E-26 208.2 10.0 276 197-500 228-514 (587)
37 cd02670 Peptidase_C19N A subfa 99.7 3.2E-18 7E-23 166.6 7.8 114 304-488 23-137 (241)
38 KOG1872 Ubiquitin-specific pro 99.6 2.5E-17 5.4E-22 168.1 0.9 235 198-488 102-346 (473)
39 KOG1871 Ubiquitin-specific pro 99.2 1.4E-12 2.9E-17 130.6 -2.8 377 1-426 1-404 (420)
40 KOG1275 PAB-dependent poly(A) 99.1 2.2E-10 4.8E-15 124.5 9.0 271 147-483 472-760 (1118)
41 KOG1864 Ubiquitin-specific pro 97.0 0.0014 3.1E-08 71.8 7.3 31 204-234 34-64 (587)
42 PF15499 Peptidase_C98: Ubiqui 93.9 0.15 3.2E-06 49.7 6.4 29 205-233 6-34 (275)
43 PF05408 Peptidase_C28: Foot-a 89.1 0.24 5.2E-06 45.8 1.9 20 201-220 33-52 (193)
44 PF12478 DUF3697: Ubiquitin-as 83.3 0.42 9.1E-06 31.2 0.3 16 42-57 18-33 (33)
45 KOG3556 Familial cylindromatos 73.1 7.1 0.00015 41.8 5.8 34 444-477 516-549 (724)
46 PF08715 Viral_protease: Papai 58.4 8.8 0.00019 39.2 3.1 36 279-320 144-179 (320)
47 COG3478 Predicted nucleic-acid 35.1 34 0.00074 26.3 2.3 35 427-463 5-41 (68)
48 PF09855 DUF2082: Nucleic-acid 30.8 44 0.00096 25.7 2.4 37 427-463 1-37 (64)
49 KOG1867 Ubiquitin-specific pro 23.1 15 0.00033 39.9 -2.0 31 200-230 76-106 (492)
50 COG4647 AcxC Acetone carboxyla 20.5 1.2E+02 0.0026 26.6 3.4 67 380-456 69-143 (165)
No 1
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.2e-44 Score=364.09 Aligned_cols=233 Identities=24% Similarity=0.371 Sum_probs=194.4
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCC----------CCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI----------PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~----------~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~ 272 (500)
||.|+||||||||+||+|+++|+||++++....... +....+++++|+.||.+||...
T Consensus 1 GL~NlGnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~------------ 68 (324)
T cd02668 1 GLKNLGATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGN------------ 68 (324)
T ss_pred CcccCCceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCC------------
Confidence 899999999999999999999999999987643221 0123579999999999998643
Q ss_pred CCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhC
Q 010812 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (500)
Q Consensus 273 ~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (500)
...++|..|..++. + ..++|||||||+.+|||.||+++.......
T Consensus 69 --~~~i~p~~f~~~l~-----~-----~~~~QqDa~EFl~~lLd~L~~~l~~~~~~~----------------------- 113 (324)
T cd02668 69 --RSVVDPSGFVKALG-----L-----DTGQQQDAQEFSKLFLSLLEAKLSKSKNPD----------------------- 113 (324)
T ss_pred --CceEChHHHHHHhC-----C-----CCccccCHHHHHHHHHHHHHHHHhhccCCc-----------------------
Confidence 56899999998773 2 568999999999999999999886321100
Q ss_pred CCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---Cc
Q 010812 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YR 428 (500)
Q Consensus 353 ~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~ 428 (500)
..++|.++|.|++...++|. |++.+.+.|+|++|+|+|+ +..+|+++|+.|+.+|.++| +.
T Consensus 114 -------------~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--~~~sl~~~L~~~~~~e~l~g~~~~~ 178 (324)
T cd02668 114 -------------LKNIVQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQLK--GHKTLEECIDEFLKEEQLTGDNQYF 178 (324)
T ss_pred -------------ccchhhhhcceEEEEEEEeCCCCCccccccccEEEEEEec--ccCCHHHHHHHhhCceecCCCcccc
Confidence 02457899999999999996 9999999999999999998 57899999999999999988 45
Q ss_pred cccCCCCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 429 TSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 429 c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
|..|++. +.|.|+..|.++|+||+|||+||.|+. +...|++++|.||+.|||++|+... ...+..|+|+
T Consensus 179 C~~C~~~--~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-~~~~~~Y~L~ 249 (324)
T cd02668 179 CESCNSK--TDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES-DEGSYVYELS 249 (324)
T ss_pred CCCCCce--eeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-cCCCcEEEEE
Confidence 6666554 489999999999999999999999993 4568999999999999999998543 3456789885
No 2
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.4e-44 Score=360.64 Aligned_cols=234 Identities=29% Similarity=0.353 Sum_probs=190.7
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHH
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (500)
||.|+||||||||+||+|+| .+++++|+.||..||... .....++|..
T Consensus 1 Gl~NlGnTCY~NsvLQ~L~~--------------------~~l~~~L~~lf~~l~~~~------------~~~~~isP~~ 48 (300)
T cd02663 1 GLENFGNTCYCNSVLQALYF--------------------ENLLTCLKDLFESISEQK------------KRTGVISPKK 48 (300)
T ss_pred CccCCCcceehhHHHHHhhh--------------------HHHHHHHHHHHHHHHhCC------------CCCeeECHHH
Confidence 99999999999999999988 468889999999998643 2345799999
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccc
Q 010812 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (500)
Q Consensus 283 f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~ 362 (500)
|+.+++...+.| .+++||||||||.+|||.||+++.......... . ...+.. .
T Consensus 49 f~~~l~~~~~~f-----~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~--~---------~~~~~~-----------~ 101 (300)
T cd02663 49 FITRLKRENELF-----DNYMHQDAHEFLNFLLNEIAEILDAERKAEKAN--R---------KLNNNN-----------N 101 (300)
T ss_pred HHHHHHhhcCCC-----CCCccccHHHHHHHHHHHHHHHHHHHhhccccc--c---------cccccc-----------c
Confidence 999999887776 899999999999999999999998654322100 0 000000 0
Q ss_pred cccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---CccccCCCCcee
Q 010812 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVV 438 (500)
Q Consensus 363 ~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~c~~C~~~~~~ 438 (500)
.....++|.++|+|++.+.++|. |++.+.+.|+|++|+|+|+ +..+|++||+.|+++|.|+| +.|+.|++. +
T Consensus 102 ~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~~~e~f~~Lsl~i~--~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~--~ 177 (300)
T cd02663 102 AEPQPTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSIDVE--QNTSITSCLRQFSATETLCGRNKFYCDECCSL--Q 177 (300)
T ss_pred CCcCCCChhhhCceEEEeeEEeCCCCCCccccceeEEeccCCC--CcCCHHHHHHHhhcccccCCCCcEECCCCCCc--e
Confidence 01123668999999999999996 9999999999999999998 57899999999999999987 456666554 4
Q ss_pred eEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 439 TAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 439 ~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
.|.|+..|.++|+||+|||+||.|+. +...|++++|.||++|||.++... ....+..|+|+
T Consensus 178 ~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~-~~~~~~~Y~L~ 240 (300)
T cd02663 178 EAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD-AENPDRLYELV 240 (300)
T ss_pred eEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccc-cCCCCeEEEEE
Confidence 99999999999999999999999994 346899999999999999987532 23456789885
No 3
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-43 Score=362.05 Aligned_cols=248 Identities=28% Similarity=0.395 Sum_probs=204.7
Q ss_pred CccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC---CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCc
Q 010812 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD---IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (500)
Q Consensus 202 ~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~i 278 (500)
+||.|+||||||||+||+|+++|+||++++...... ......++.++|++|+.+|+... ....+
T Consensus 1 rGl~N~gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~-------------~~~~~ 67 (328)
T cd02660 1 RGLINLGATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG-------------DRSPY 67 (328)
T ss_pred CCccccCcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC-------------CCCCc
Confidence 699999999999999999999999999998754221 23345689999999999995321 24578
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcc
Q 010812 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (500)
Q Consensus 279 sP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~ 358 (500)
.|..|+.+++...+.| .++.|||||||+.+|||.||+++........
T Consensus 68 ~~~~~l~~~~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~~~~~---------------------------- 114 (328)
T cd02660 68 GPINLLYLSWKHSRNL-----AGYSQQDAHEFFQFLLDQLHTHYGGDKNEAN---------------------------- 114 (328)
T ss_pred CHHHHHHHHHhhchhh-----cccccccHHHHHHHHHHHHHHHhhccccccc----------------------------
Confidence 9999999998876665 8899999999999999999998865322100
Q ss_pred cccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc-------------ccCHHHHHhhcccceee
Q 010812 359 VTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA-------------VHTIEDALRLFSAPENL 424 (500)
Q Consensus 359 i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~-------------~~sL~d~L~~~~~~E~L 424 (500)
......++|.++|+|++.+.++|. |++.+.+.|+|++|+|+||... ..+|++||+.|+++|.+
T Consensus 115 ---~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~ 191 (328)
T cd02660 115 ---DESHCNCIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKL 191 (328)
T ss_pred ---ccccCCceeEEecccEEEeeeEcCCCCCccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCcccc
Confidence 000112578999999999999996 9999999999999999998542 38999999999999999
Q ss_pred eCC--ccccCCCCceeeEEEEEEcccCccceEEEecceeeCC-CCeeeccceeeeCceeeeCCccccC--------CCCC
Q 010812 425 EGY--RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLVT--------PSAE 493 (500)
Q Consensus 425 ~g~--~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~LDL~~y~~~~--------~~~~ 493 (500)
++. .|..|+... .+.++..|.++|+||+|||+||.|+. +...|+++.|.||.+|||.+|+... ....
T Consensus 192 ~~~~~~C~~C~~~~--~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~ 269 (328)
T cd02660 192 GDFAYKCSGCGSTQ--EATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDP 269 (328)
T ss_pred CCCCccCCCCCCcc--ceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhcccccccccccccCCC
Confidence 875 677777665 89999999999999999999999996 5568999999999999999998741 2345
Q ss_pred CcceeeC
Q 010812 494 VLQFLNV 500 (500)
Q Consensus 494 ~~~Y~Li 500 (500)
+..|+|+
T Consensus 270 ~~~Y~L~ 276 (328)
T cd02660 270 DYTYDLF 276 (328)
T ss_pred CceEEEE
Confidence 6889985
No 4
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-44 Score=371.95 Aligned_cols=247 Identities=33% Similarity=0.486 Sum_probs=209.0
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhh-cCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELR-TRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~-~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (500)
...++||.|+|||||+|||||||.+|||+..||++.. ...+.....|++|+|+.++..-.. ..+.
T Consensus 105 ~~~~~GL~NlGNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~--------------~~g~ 170 (545)
T KOG1865|consen 105 AAVGAGLQNLGNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALH--------------NPGH 170 (545)
T ss_pred ccCCcceecCCccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhc--------------CCCC
Confidence 3456999999999999999999999999999997654 444556789999999998865432 3356
Q ss_pred CcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCC
Q 010812 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (500)
Q Consensus 277 ~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~ 356 (500)
+|+|..|+..|+.+...| ..+.|+||||||++++|.|+..+........ .
T Consensus 171 pisP~~i~s~L~~I~~~f-----~~grQEDAHEFLr~~vd~mqk~cL~g~~~~~---~---------------------- 220 (545)
T KOG1865|consen 171 PISPSQILSNLRNISAHF-----GRGRQEDAHEFLRFTVDAMQKACLPGHKQVD---P---------------------- 220 (545)
T ss_pred ccChHHHHHhhhhhcccc-----cCCchhhHHHHHHHHHHHHHHhhcCCCccCC---c----------------------
Confidence 999999999999998877 8899999999999999999998852111000 0
Q ss_pred cccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCC
Q 010812 357 SAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (500)
Q Consensus 357 s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~ 435 (500)
.+.-.++|+.+|+|.+++.|+|. |.++|.++|+.++|+|.|. ...+|++||++|+++|.|+|.+.|.|++|
T Consensus 221 ------~sq~ttlv~~iFGG~LrS~vkC~~C~~vS~tyE~~~dltvei~--d~~sl~~AL~qFt~~E~L~gen~Y~C~~C 292 (545)
T KOG1865|consen 221 ------RSQDTTLVHQIFGGYLRSQIKCLHCKGVSDTYEPYLDLTLEIQ--DASSLQQALEQFTKPEKLDGENAYHCGRC 292 (545)
T ss_pred ------ccccceehhhhhccchhhceecccCCCcccccccccceEEEec--cchhHHHHHHHhhhHHhhCCccccccchh
Confidence 00012668999999999999997 9999999999999999997 68899999999999999999777777654
Q ss_pred c-eeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccccCCCCCCcceee
Q 010812 436 G-VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLN 499 (500)
Q Consensus 436 ~-~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~L 499 (500)
. +++|.|+..|.++|.||+||||||+. +...||+++|.||+.|||.||+- .+.+.+..|.|
T Consensus 293 k~~v~A~K~lti~raPnVLTi~LKRF~~--~~~gKI~K~I~fPE~LDl~PyMS-~~~e~s~~Y~L 354 (545)
T KOG1865|consen 293 KQKVPASKQLTIHRAPNVLTLHLKRFSN--GTGGKISKPVSFPETLDLQPYMS-QPNEGSTVYKL 354 (545)
T ss_pred hhhCcccceeeeecCCceEEEeeehhcc--CcccccccccCCccccccccccc-CCCCCCceEEE
Confidence 3 77999999999999999999999997 45679999999999999999985 55667788987
No 5
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-44 Score=377.70 Aligned_cols=287 Identities=22% Similarity=0.271 Sum_probs=245.2
Q ss_pred CCCCCCccccccCC-CCCcccccccccCCCCCC------------CCccCcccCCCCc-------cccCCCCCCccccCC
Q 010812 149 NPSPISKFHVLCDG-NIDGRDQNAAACNSSISG------------SKEVPMKAINEPV-------KSVKDLLPRGLINSG 208 (500)
Q Consensus 149 ~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~-------~~~~~~~~~GL~NlG 208 (500)
..+.+|+|.....| ||.+|..+..+..++... ...++.+.|++.. .+++.+|++||+|+|
T Consensus 121 iN~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdPTGVLWHsF~nYnSKkeTGYVGlrNqG 200 (1089)
T COG5077 121 INKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDPTGVLWHSFLNYNSKKETGYVGLRNQG 200 (1089)
T ss_pred hhcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCCccceeecccccccccceeeeeeccCC
Confidence 45678999999999 999999888777653211 1345667788732 578899999999999
Q ss_pred CchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHHHHHHHH
Q 010812 209 NLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLK 288 (500)
Q Consensus 209 NTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~ 288 (500)
+||||||+||+||.+..||+.++.+++.+ +.....++.+|+++|..|+.. ..+++..+|.+.+
T Consensus 201 ATCYmNSLlQslffi~~FRk~Vy~ipTd~-p~grdSValaLQr~Fynlq~~---------------~~PvdTteltrsf- 263 (1089)
T COG5077 201 ATCYMNSLLQSLFFIAKFRKDVYGIPTDH-PRGRDSVALALQRLFYNLQTG---------------EEPVDTTELTRSF- 263 (1089)
T ss_pred ceeeHHHHHHHHHHHHHHHHHhhcCCCCC-CCccchHHHHHHHHHHHHhcc---------------CCCcchHHhhhhc-
Confidence 99999999999999999999999998765 445677999999999999964 5677877776533
Q ss_pred hhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCc
Q 010812 289 NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPS 368 (500)
Q Consensus 289 ~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s 368 (500)
.|..+..++|||.|||.+.|+|.|+..+++... ..
T Consensus 264 ------gWds~dsf~QHDiqEfnrVl~DnLEksmrgt~V---------------------------------------En 298 (1089)
T COG5077 264 ------GWDSDDSFMQHDIQEFNRVLQDNLEKSMRGTVV---------------------------------------EN 298 (1089)
T ss_pred ------CcccchHHHHHhHHHHHHHHHHHHHHhhcCChh---------------------------------------hh
Confidence 345568899999999999999999997754332 23
Q ss_pred ccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcc
Q 010812 369 ALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQ 447 (500)
Q Consensus 369 ~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~ 447 (500)
.++.+|.|+|++.+.|- -.++|.|.|.||+++|+++ +..+|+|+++.|++.|.|+|.+|+.|..+|+|+|.|...|.
T Consensus 299 aln~ifVgkmksyikCvnvnyEsarvedfwdiqlNvK--~~knLqeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFe 376 (1089)
T COG5077 299 ALNGIFVGKMKSYIKCVNVNYESARVEDFWDIQLNVK--GMKNLQESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFE 376 (1089)
T ss_pred HHhHHHHHHhhceeeEEEechhhhhHHHHHHHHhccc--chhhHHHHHHHhhhheeccCCcccccccccchhhccceeec
Confidence 47899999999999995 7999999999999999998 89999999999999999999999999999999999999999
Q ss_pred cCccceEEEecceeeC--CCCeeeccceeeeCceeeeCCccccCC---CCCCcceee
Q 010812 448 TLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTP---SAEVLQFLN 499 (500)
Q Consensus 448 ~lP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~~~---~~~~~~Y~L 499 (500)
+|||||.||||||.|| .+.+.|||++.+||+++||.+|+.... .+.++.|.|
T Consensus 377 SlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~ksen~d~vY~L 433 (1089)
T COG5077 377 SLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVL 433 (1089)
T ss_pred cCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhhhhcccCcEEEE
Confidence 9999999999999999 677899999999999999999987543 234478876
No 6
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2e-42 Score=353.41 Aligned_cols=224 Identities=21% Similarity=0.263 Sum_probs=181.5
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHH---HHhcCCCCCCCCccccccccCCC
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGF---VSDFDTPSGGSSKKKNISVLDIG 275 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L---~~~l~~~~~~~~~~~~~~~~~~~ 275 (500)
.+++||.|+||||||||+||||+++|+||+++..+.... .....++.+ +.+++.. ..
T Consensus 22 ~~~~GL~NlGnTCYmNSvLQ~L~~~p~fr~~l~~~~~~~------~~~~~~q~~~~~l~~~~~~--------------~~ 81 (332)
T cd02671 22 LPFVGLNNLGNTCYLNSVLQVLYFCPGFKHGLKHLVSLI------SSVEQLQSSFLLNPEKYND--------------EL 81 (332)
T ss_pred CCCcceeccCceEeHHHHHHHHHcChHHHHHHHhhhccc------CcHHHHHHHHHHHHHHHhh--------------cc
Confidence 467999999999999999999999999999997764211 111222222 2333321 12
Q ss_pred CCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCC
Q 010812 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKN 355 (500)
Q Consensus 276 ~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n 355 (500)
..+.|..|+.+++...+.| .+++||||||||.+|||.|++.
T Consensus 82 ~~~~P~~~~~~l~~~~~~f-----~~~~QQDA~EFl~~LLd~L~~~---------------------------------- 122 (332)
T cd02671 82 ANQAPRRLLNALREVNPMY-----EGYLQHDAQEVLQCILGNIQEL---------------------------------- 122 (332)
T ss_pred cccCHHHHHHHHHHhcccc-----CCccccCHHHHHHHHHHHHHHH----------------------------------
Confidence 3457999999999987776 8899999999999999999842
Q ss_pred CcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc-----------------ccCHHHHHhh
Q 010812 356 KSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA-----------------VHTIEDALRL 417 (500)
Q Consensus 356 ~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~-----------------~~sL~d~L~~ 417 (500)
|.++|+|++.+.++|. |++.+.+.|+|++|+|+|+... ..+|++||+.
T Consensus 123 --------------i~~~F~g~~~~~~~C~~C~~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~ 188 (332)
T cd02671 123 --------------VEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQ 188 (332)
T ss_pred --------------HHhhhceEEEEEEEeCCCCCeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHH
Confidence 4789999999999996 9999999999999999998542 3699999999
Q ss_pred cccceeeeCC---ccccCCCCceeeEEEEEEcccCccceEEEecceeeCC------CCeeeccceeeeCceeeeCCcccc
Q 010812 418 FSAPENLEGY---RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS------QGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 418 ~~~~E~L~g~---~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~------~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
|+++|.|+|. .|+.|++ ++.|.|+..|.++|+||+|||+||.++. +...|++++|.||..|||.+|...
T Consensus 189 f~~~E~l~g~n~y~C~~C~~--~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~ 266 (332)
T cd02671 189 FASVERIVGEDKYFCENCHH--YTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK 266 (332)
T ss_pred hCCcceecCCCCeeCCCCCC--ceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC
Confidence 9999999874 4555554 4599999999999999999999999873 356899999999999999987542
Q ss_pred CCCCCCcceeeC
Q 010812 489 TPSAEVLQFLNV 500 (500)
Q Consensus 489 ~~~~~~~~Y~Li 500 (500)
.....|+|.
T Consensus 267 ---~~~~~Y~L~ 275 (332)
T cd02671 267 ---PKNDVYRLF 275 (332)
T ss_pred ---CCCCeEEEE
Confidence 456788884
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=4e-42 Score=348.01 Aligned_cols=236 Identities=23% Similarity=0.319 Sum_probs=195.5
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC--CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcCh
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSP 280 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP 280 (500)
||.|+||||||||+||+|+++|+||+++++..... ......+++++|++|+..|+.. ...++|
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~---------------~~~i~p 65 (305)
T cd02657 1 GLTNLGNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK---------------QEPVPP 65 (305)
T ss_pred CcccccchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC---------------CCcCCc
Confidence 89999999999999999999999999998765321 1234568999999999999853 347999
Q ss_pred HHHHHHHHhhCCCCCCCCC-CCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccc
Q 010812 281 SMFEAVLKNFTPDVPNSIS-GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (500)
Q Consensus 281 ~~f~~~l~~~~p~f~~~~f-~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i 359 (500)
..|+..++...+.|..... .+++|||||||+.+|||.|++++.....
T Consensus 66 ~~~~~~l~~~~~~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~~~-------------------------------- 113 (305)
T cd02657 66 IEFLQLLRMAFPQFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGS-------------------------------- 113 (305)
T ss_pred HHHHHHHHHHCcCcccccCCCCccccCHHHHHHHHHHHHHHHhcccCC--------------------------------
Confidence 9999999998887732211 4669999999999999999998753100
Q ss_pred ccccccCCcccccccccEEEeEEEeC-CC-cccccccCCccceeccccC-cccCHHHHHhhcccceeeeCCccccCCCCc
Q 010812 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GN-KASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNAG 436 (500)
Q Consensus 360 ~~~~s~~~s~I~~lF~G~l~s~i~C~-c~-~~S~r~e~F~~LsL~Ip~~-~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~ 436 (500)
..++|.++|.|++.+.++|. |+ ..+.+.|+|++|+|+|+.. ...+|+++|+.++.++.. ..|++|++..
T Consensus 114 ------~~~~i~~~F~g~~~~~~~C~~C~~~~~~~~e~f~~Lsl~i~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~ 185 (305)
T cd02657 114 ------KGSFIDQLFGIELETKMKCTESPDEEEVSTESEYKLQCHISITTEVNYLQDGLKKGLEEEIE--KHSPTLGRDA 185 (305)
T ss_pred ------CCcHHHHhhceEEEEEEEcCCCCCCCccccccceEEEeecCCCcccccHHHHHHHhhhhhhh--hcCcccCCCc
Confidence 02458999999999999996 88 7999999999999999853 246899999999987654 4678787766
Q ss_pred eeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 437 VVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 437 ~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
.+.|+.+|.++|+||+|||+||.|+. ....|++++|.||++|||.+|+. .+.+|+|+
T Consensus 186 --~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~-----~~~~Y~L~ 244 (305)
T cd02657 186 --IYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT-----PSGYYELV 244 (305)
T ss_pred --eEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-----CCCcEEEE
Confidence 78999999999999999999999983 44679999999999999999985 34678774
No 8
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-43 Score=363.60 Aligned_cols=268 Identities=25% Similarity=0.376 Sum_probs=225.4
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHh------hcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL------RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~ 272 (500)
.|.+||.|+||||||||+||||.||+.+|+|+..- +..+.....+.++.+++.|++++.+++
T Consensus 263 ~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~------------ 330 (823)
T COG5560 263 AGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN------------ 330 (823)
T ss_pred ccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc------------
Confidence 58899999999999999999999999999999543 233344556789999999999998654
Q ss_pred CCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCC----CcccccchhhhhhH
Q 010812 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSING----ANTALVSLAEEDEW 348 (500)
Q Consensus 273 ~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~----~~~~~~~~~~~~~w 348 (500)
..++.|..|+..++.++..| .|+.|||+|||+.+|||.|||++++...+++...+ .....+.+.+++.|
T Consensus 331 --~haf~Ps~fK~tIG~fn~~f-----sGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW 403 (823)
T COG5560 331 --LHAFTPSGFKKTIGSFNEEF-----SGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECW 403 (823)
T ss_pred --ccccChHHHHHHHhhhHHHh-----cCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHH
Confidence 67899999999999986554 99999999999999999999999999888774433 22223456789999
Q ss_pred hHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceecccc----------------------
Q 010812 349 ETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS---------------------- 405 (500)
Q Consensus 349 ~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~---------------------- 405 (500)
..|..+|.|+ |.+||.|.++++++|. |+.+|.+++||++|+||+|.
T Consensus 404 ~~H~kRNdSi-----------ItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~i 472 (823)
T COG5560 404 WEHLKRNDSI-----------ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKI 472 (823)
T ss_pred HHHHhcCccc-----------HHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEE
Confidence 9999999865 5799999999999997 99999999999999999973
Q ss_pred --------------------------------------------------------------------------------
Q 010812 406 -------------------------------------------------------------------------------- 405 (500)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (500)
T Consensus 473 el~~sSt~~~lk~lv~~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~g 552 (823)
T COG5560 473 ELDASSTIRGLKKLVDAEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKG 552 (823)
T ss_pred EEeccchHHHHHHHHHHHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEecccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 010812 406 -------------------------------------------------------------------------------- 405 (500)
Q Consensus 406 -------------------------------------------------------------------------------- 405 (500)
T Consensus 553 Yks~rlFg~pflqlnv~~~~~i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~vee 632 (823)
T COG5560 553 YKSKRLFGDPFLQLNVLIKASIYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEE 632 (823)
T ss_pred ccchhhhCCcceEEEeecchhhHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhh
Confidence
Q ss_pred ---------------------------------------CcccCHHHHHhhcccceeeeC---CccccCCCCceeeEEEE
Q 010812 406 ---------------------------------------EAVHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKS 443 (500)
Q Consensus 406 ---------------------------------------~~~~sL~d~L~~~~~~E~L~g---~~c~~C~~~~~~~a~k~ 443 (500)
....+|+|||..|.++|.|.- +.|+.|.. .+.|+|+
T Consensus 633 E~~~n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCke--frqasKq 710 (823)
T COG5560 633 EGQMNFNDAVVISCEWEEKRYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKE--FRQASKQ 710 (823)
T ss_pred hhccCCCcceEEeeeccccchhhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHh--hhhhhhh
Confidence 134799999999999999964 44555544 4599999
Q ss_pred EEcccCccceEEEecceeeCCCCeeeccceeeeCce-eeeCCccccCCCCCCcceee
Q 010812 444 VKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEVLQFLN 499 (500)
Q Consensus 444 ~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~-LDL~~y~~~~~~~~~~~Y~L 499 (500)
+.|+++|.||+||||||.++...+.||.+-|+||.. |||+.|...-. ++...|+|
T Consensus 711 melwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~~-~p~liydl 766 (823)
T COG5560 711 MELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVD-DPRLIYDL 766 (823)
T ss_pred hhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEeec-CcceEEEe
Confidence 999999999999999999997778999999999996 99999876432 22255655
No 9
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.4e-41 Score=347.53 Aligned_cols=208 Identities=27% Similarity=0.447 Sum_probs=176.2
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHH
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (500)
||.|+||||||||+||+|+++|+||+++++..... ......+..+|+.++..|.... ..++.|..
T Consensus 1 GL~NlGnTCY~NS~LQ~L~~~~~fr~~ll~~~~~~-~~~~~~~~~~L~~lf~~l~~~~--------------~~~~~~~~ 65 (327)
T cd02664 1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLNLPR-LGDSQSVMKKLQLLQAHLMHTQ--------------RRAEAPPD 65 (327)
T ss_pred CCcCCcccHHHHHHHHHHHCcHHHHHHHHcCCccc-cCCcchHHHHHHHHHHHHhhcC--------------CcccCCHH
Confidence 89999999999999999999999999998865421 1234567889999998876432 44566665
Q ss_pred -HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccccc
Q 010812 283 -FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTR 361 (500)
Q Consensus 283 -f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~ 361 (500)
++.++. .+. |..++|||||||+.+|||.|+.
T Consensus 66 ~~l~~~~--~~~-----f~~~~QqDa~EFl~~lLd~l~~----------------------------------------- 97 (327)
T cd02664 66 YFLEASR--PPW-----FTPGSQQDCSEYLRYLLDRLHT----------------------------------------- 97 (327)
T ss_pred HHHHHhc--ccc-----cCCCCcCCHHHHHHHHHHHHHH-----------------------------------------
Confidence 555433 234 4789999999999999999992
Q ss_pred ccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---CccccCCCCce
Q 010812 362 TQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNAGV 437 (500)
Q Consensus 362 ~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~c~~C~~~~~ 437 (500)
+|.++|+|++.+.++|. |++.+.+.|+|.+|+|+|| +|+++|+.|+.+|.++| +.|+.|++..
T Consensus 98 -------~i~~~F~G~~~~~i~C~~C~~~s~~~e~f~~l~L~i~-----sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~- 164 (327)
T cd02664 98 -------LIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFP-----SVQDLLNYFLSPEKLTGDNQYYCEKCASLQ- 164 (327)
T ss_pred -------HHHhhCcEEeEeEEEcCCCCCEecccccceeeecCCC-----CHHHHHHHhcCeeEccCCCceeCCccCCcc-
Confidence 15799999999999996 9999999999999999997 89999999999999988 6677776655
Q ss_pred eeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccc
Q 010812 438 VTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLL 487 (500)
Q Consensus 438 ~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~ 487 (500)
.|.|+..|.++|+||+|||+||.|+. +...|++++|.||+.|||..|+.
T Consensus 165 -~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~ 215 (327)
T cd02664 165 -DAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVE 215 (327)
T ss_pred -ceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccc
Confidence 89999999999999999999999993 44689999999999999999874
No 10
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=7.8e-42 Score=362.01 Aligned_cols=238 Identities=22% Similarity=0.272 Sum_probs=189.1
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC-CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCC
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (500)
.|.+||.|+||||||||+||+|+|+|+||++++...... ......+++++|+.+++.+|... .....
T Consensus 117 ~G~vGL~NlGnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~------------~~~~~ 184 (440)
T cd02669 117 PGFVGLNNIKNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR------------NFKGH 184 (440)
T ss_pred CCccCccCCCCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc------------cCCCc
Confidence 467999999999999999999999999999998654221 11244689999999999999643 23568
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCc
Q 010812 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (500)
Q Consensus 278 isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s 357 (500)
++|.+|+.++....+ ..|.+++||||||||.+|||.||+++.+....
T Consensus 185 isP~~fl~~l~~~~~----~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~~~----------------------------- 231 (440)
T cd02669 185 VSPHELLQAVSKVSK----KKFSITEQSDPVEFLSWLLNTLHKDLGGSKKP----------------------------- 231 (440)
T ss_pred cCHHHHHHHHHhhcc----cccCCcccCCHHHHHHHHHHHHHHHhccCCCC-----------------------------
Confidence 999999999987642 23589999999999999999999988532100
Q ss_pred ccccccccCCcccccccccEEEeEEEeC-CC---------------cccccccCCccceeccccCc------------cc
Q 010812 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GN---------------KASATVQPFLLLHLDIYSEA------------VH 409 (500)
Q Consensus 358 ~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~---------------~~S~r~e~F~~LsL~Ip~~~------------~~ 409 (500)
..++|.++|+|++.+.++|. |. ..+.+.++|++|+|+||..+ ..
T Consensus 232 --------~~~ii~~~F~G~l~~~~~c~~~~~~~~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~ 303 (440)
T cd02669 232 --------NSSIIHDCFQGKVQIETQKIKPHAEEEGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQV 303 (440)
T ss_pred --------CCCcceeccCceEEEEEEeecccccccccccccccccccceeeeccceEEEecCCCCccccccccccccCcc
Confidence 12678999999999999884 32 35678899999999998542 14
Q ss_pred CHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCce-eeeCCcccc
Q 010812 410 TIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLV 488 (500)
Q Consensus 410 sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~-LDL~~y~~~ 488 (500)
+|+++|+. |.|+.|.... .++|+.+|.+||+||+||||||.++.....|+++.|+||.. |||.+|+..
T Consensus 304 ~l~e~L~k---------y~~~~c~~~~--~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~ 372 (440)
T cd02669 304 PLKQLLKK---------YDGKTETELK--DSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHF 372 (440)
T ss_pred cHHHHHHh---------cCCccceecc--cceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCc
Confidence 56666654 5566665554 78999999999999999999999997667899999999997 899999864
Q ss_pred CC--CCCCcceeeC
Q 010812 489 TP--SAEVLQFLNV 500 (500)
Q Consensus 489 ~~--~~~~~~Y~Li 500 (500)
.. ......|+|+
T Consensus 373 ~~~~~~~~~~Y~L~ 386 (440)
T cd02669 373 DKPSLNLSTKYNLV 386 (440)
T ss_pred cccccCCCceEEEE
Confidence 32 3456899985
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-41 Score=342.20 Aligned_cols=230 Identities=24% Similarity=0.323 Sum_probs=186.4
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC---CCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcC
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD---IPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~---~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (500)
||.|+||||||||+||||+++|+||+++....... ......++.++|++|+..|+...................+++
T Consensus 1 GL~NlGNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~i~ 80 (311)
T cd02658 1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQVGIK 80 (311)
T ss_pred CcccCCcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCccccccccccccccC
Confidence 99999999999999999999999999997643221 122345789999999999876432110000001112456899
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccc
Q 010812 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (500)
Q Consensus 280 P~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i 359 (500)
|..|+.+++...+.| ..+.|||||||+++|||.|++++....
T Consensus 81 p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~ll~~l~~~~~~~~--------------------------------- 122 (311)
T cd02658 81 PSMFKALIGKGHPEF-----STMRQQDALEFLLHLIDKLDRESFKNL--------------------------------- 122 (311)
T ss_pred cHHHHHHHhccChhh-----cccccccHHHHHHHHHHHHHHhhcccc---------------------------------
Confidence 999999999887776 889999999999999999999875210
Q ss_pred ccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc------------ccCHHHHHhhcccceeeeC
Q 010812 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPENLEG 426 (500)
Q Consensus 360 ~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~------------~~sL~d~L~~~~~~E~L~g 426 (500)
...+.++|.|.+.++++|. |++.+.+.++|.+|+|++|... ..+|+++|+.|+.+|.+++
T Consensus 123 -------~~~~~~~f~~~~~~~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~ 195 (311)
T cd02658 123 -------GLNPNDLFKFMIEDRLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIED 195 (311)
T ss_pred -------cCCchhheEEEeeEEEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccc
Confidence 0235799999999999996 9988999999999999998543 3599999999999999984
Q ss_pred CccccCCCCceeeEEEEEEcccCccceEEEecceeeC-CCCeeeccceeeeCcee
Q 010812 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQL 480 (500)
Q Consensus 427 ~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d-~~~~~Ki~~~V~FP~~L 480 (500)
.|..|++.. .|.|+.+|.+||+||+|||+||.|+ .+...|++..|.||..|
T Consensus 196 -~C~~C~~~~--~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l 247 (311)
T cd02658 196 -FCSTCKEKT--TATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEEL 247 (311)
T ss_pred -cccCCCCcc--cEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcC
Confidence 566687665 8999999999999999999999996 56678999999999987
No 12
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=5.9e-41 Score=338.14 Aligned_cols=246 Identities=33% Similarity=0.482 Sum_probs=201.6
Q ss_pred CCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC-CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcC
Q 010812 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~-~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (500)
|+||.|+||||||||+||+|+++|+||+++.+.... .......++.++|+.++..++... ...+.
T Consensus 1 ~~GL~N~gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~ 66 (304)
T cd02661 1 GAGLQNLGNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASS--------------GPGSA 66 (304)
T ss_pred CCCccccCchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCC--------------CCccC
Confidence 689999999999999999999999999999764322 223345679999999998887543 56789
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccc
Q 010812 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (500)
Q Consensus 280 P~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i 359 (500)
|..|..++..+.+.| ..+.||||+|||.+|||.|++++.........
T Consensus 67 p~~~~~~l~~~~~~f-----~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~---------------------------- 113 (304)
T cd02661 67 PRIFSSNLKQISKHF-----RIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA---------------------------- 113 (304)
T ss_pred hHHHHHHHHHHHHhh-----cCcchhhHHHHHHHHHHHHHHHHhhhcccccc----------------------------
Confidence 999999999987766 88999999999999999999987543211100
Q ss_pred ccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---CccccCCCC
Q 010812 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNA 435 (500)
Q Consensus 360 ~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~c~~C~~~ 435 (500)
........++|.++|+|++.+.++|. |+..+.+.++|+.|+|+|| +..+|+++|+.|+.+|.+++ +.|+.|++.
T Consensus 114 ~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~s~~~e~~~~l~l~i~--~~~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~ 191 (304)
T cd02661 114 VDPSSQETTLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDIK--GADSLEDALEQFTKPEQLDGENKYKCERCKKK 191 (304)
T ss_pred cCccccCCChhhhcCCcEEeeeEEeCCCCCCcCccccceeeeeecC--CCCcHHHHHHHhcCceeeCCCCCeeCCCCCCc
Confidence 00000112568999999999999996 9999999999999999998 45899999999999999988 456666665
Q ss_pred ceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 436 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
. .+.++..|.++|++|+|||+||.++ ...|+++.|.||++|||.+|+.. .......|+|+
T Consensus 192 ~--~~~~~~~i~~~P~iL~i~l~Rf~~~--~~~Ki~~~v~f~~~L~l~~~~~~-~~~~~~~Y~L~ 251 (304)
T cd02661 192 V--KASKQLTIHRAPNVLTIHLKRFSNF--RGGKINKQISFPETLDLSPYMSQ-PNDGPLKYKLY 251 (304)
T ss_pred c--ceEEEEEEecCCcEEEEEEeccccC--CccccCCeEecCCeechhhcccc-CCCCCceeeEE
Confidence 5 8899999999999999999999998 46799999999999999999864 24556789884
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.4e-41 Score=337.36 Aligned_cols=197 Identities=29% Similarity=0.436 Sum_probs=172.1
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHH
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (500)
||.|+||||||||+||+|+|+|+||+++.. +|..
T Consensus 1 Gl~N~GntCy~NsvLQ~L~~~~~~~~~~l~----------------------------------------------~P~~ 34 (279)
T cd02667 1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE----------------------------------------------TPKE 34 (279)
T ss_pred CCcCCCCchHHHHHHHHHhcCHHHHHHHHH----------------------------------------------CHHH
Confidence 999999999999999999999999999876 3556
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccc
Q 010812 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (500)
Q Consensus 283 f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~ 362 (500)
|+..+....+.| .+++||||||||.+|||.|+.
T Consensus 35 ~~~~l~~~~~~f-----~~~~QqDA~Efl~~lld~l~~------------------------------------------ 67 (279)
T cd02667 35 LFSQVCRKAPQF-----KGYQQQDSHELLRYLLDGLRT------------------------------------------ 67 (279)
T ss_pred HHHHHHHhhHhh-----cCCchhhHHHHHHHHHHHHHH------------------------------------------
Confidence 666776666665 889999999999999999992
Q ss_pred cccCCcccccccccEEEeEEEeC-CCcccccccCCccceecccc--CcccCHHHHHhhcccceeeeCCccccCCCCceee
Q 010812 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS--EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVT 439 (500)
Q Consensus 363 ~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~--~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~ 439 (500)
+|.++|.|++.+.++|. |++.+.+.|+|++|+|+++. ....+|++||+.|+++|.|+|.+++.|..|+ .
T Consensus 68 ------~i~~~F~G~~~~~i~C~~C~~~s~~~E~f~~L~Lp~~~~~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~--~ 139 (279)
T cd02667 68 ------FIDSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCT--K 139 (279)
T ss_pred ------hhhhhcceEEEEEEEcCCCCCEeCccccceEEecCCCcccCCCCCHHHHHHhhcCeeEecCCCcccCCccC--c
Confidence 25789999999999996 99999999999999999863 2457999999999999999998877787776 5
Q ss_pred EEEEEEcccCccceEEEecceeeCC-CCeeeccceeeeCceeeeCCccccC----CCCCCcceeeC
Q 010812 440 AKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQLVLGRDLLVT----PSAEVLQFLNV 500 (500)
Q Consensus 440 a~k~~~i~~lP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~LDL~~y~~~~----~~~~~~~Y~Li 500 (500)
|.|+..|.++|+||+|||+||.|+. +...|++++|.||++|||.+|+... .......|+|+
T Consensus 140 a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~ 205 (279)
T cd02667 140 AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLY 205 (279)
T ss_pred eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCccccccccCCCceEEEE
Confidence 9999999999999999999999994 3678999999999999999998751 13456889985
No 14
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.6e-40 Score=340.38 Aligned_cols=239 Identities=21% Similarity=0.305 Sum_probs=192.9
Q ss_pred CCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcC
Q 010812 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (500)
Q Consensus 200 ~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (500)
|.+||.|+||||||||+||+|+++|+||+++.............++.++|+.||..|+... ...+.
T Consensus 1 g~~GL~N~GntCY~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~~--------------~~~~~ 66 (334)
T cd02659 1 GYVGLKNQGATCYMNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLSE--------------SPVKT 66 (334)
T ss_pred CCCCcccCCcchHHHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhCC--------------ccccC
Confidence 5689999999999999999999999999999886322223345679999999999998643 22333
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccc
Q 010812 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (500)
Q Consensus 280 P~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i 359 (500)
|..+. .+..+ .+..+..+.||||+||+.+||+.|++++.....
T Consensus 67 ~~~~~-~~~~~----~~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~~~-------------------------------- 109 (334)
T cd02659 67 TELTD-KTRSF----GWDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQ-------------------------------- 109 (334)
T ss_pred cchhh-eeccC----CCCCCCcccchhHHHHHHHHHHHHHHHhccCcc--------------------------------
Confidence 43332 22222 233458899999999999999999998753110
Q ss_pred ccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC---CccccCCCC
Q 010812 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG---YRTSSTGNA 435 (500)
Q Consensus 360 ~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g---~~c~~C~~~ 435 (500)
.++|.++|.|.+...++|. |.+.+.+.++|++|+|+++ +..+|+++|+.|+.+|.+++ +.|+.|++.
T Consensus 110 -------~~~i~~lF~g~~~~~~~C~~C~~~s~~~e~f~~l~l~i~--~~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~ 180 (334)
T cd02659 110 -------EGLIKNLFGGKLVNYIICKECPHESEREEYFLDLQVAVK--GKKNLEESLDAYVQGETLEGDNKYFCEKCGKK 180 (334)
T ss_pred -------cchhhhhCceEEEeEEEecCCCceecccccceEEEEEcC--CCCCHHHHHHHhcCeeEecCCccEecCcCCCc
Confidence 1457899999999999996 9999999999999999998 57899999999999999988 566666665
Q ss_pred ceeeEEEEEEcccCccceEEEecceeeC--CCCeeeccceeeeCceeeeCCccccCC----------CCCCcceeeC
Q 010812 436 GVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVTP----------SAEVLQFLNV 500 (500)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~~~----------~~~~~~Y~Li 500 (500)
. .+.++..|.++|+||+|||+||.|+ .....|++++|.||..|||++|+.... ......|+|+
T Consensus 181 ~--~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~ 255 (334)
T cd02659 181 V--DAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELH 255 (334)
T ss_pred c--cEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccccccccccccccccCCCCeeEEEE
Confidence 4 8999999999999999999999998 345689999999999999999987542 2346789985
No 15
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-38 Score=305.01 Aligned_cols=271 Identities=24% Similarity=0.342 Sum_probs=199.2
Q ss_pred CCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHH------HhhcCCCCCCCC-cHHHHHHHHHHhcCCCCCCCCccccc
Q 010812 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ------ELRTRDIPKAGY-PTLTAFVGFVSDFDTPSGGSSKKKNI 269 (500)
Q Consensus 197 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~------~~~~~~~~~~~~-~l~~~l~~L~~~l~~~~~~~~~~~~~ 269 (500)
....|.||+|.|||||||++||||+.+..+...++ .+++......+. -....|.-|...+..
T Consensus 67 dn~~p~GL~N~GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~g~~~~k~F~~l~~~~~~----------- 135 (415)
T COG5533 67 DNLPPNGLRNKGNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKPGSNAFKQFIALYETPGC----------- 135 (415)
T ss_pred cccCCccccccCceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCcchhHHHHHHHHHhcccc-----------
Confidence 34567999999999999999999999999988543 333433333333 334455555555543
Q ss_pred cccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccC-------CCcccccch
Q 010812 270 SVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-------GANTALVSL 342 (500)
Q Consensus 270 ~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~-------~~~~~~~~~ 342 (500)
.....|+|..|++.+....+.| .+-+|||+|||+.++||.||++++.-..+..-.. -++..+.+.
T Consensus 136 ---Hg~~sis~~nF~~i~~~~n~~f-----s~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~ 207 (415)
T COG5533 136 ---HGPKSISPRNFIDILSGRNKLF-----SGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSH 207 (415)
T ss_pred ---CCCcccchHHHHHHHccccccc-----cccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcch
Confidence 2356799999999999986665 8899999999999999999999975433321110 111111222
Q ss_pred hhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccc
Q 010812 343 AEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAP 421 (500)
Q Consensus 343 ~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~ 421 (500)
-..-+|+-+...|+|+ |.+.|.|+..+.++|. |++.|+++.+|..|.+|++.-....|+|||++|.++
T Consensus 208 ~S~~EWn~~L~sn~S~-----------v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~ 276 (415)
T COG5533 208 FSHHEWNLHLRSNKSL-----------VAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEE 276 (415)
T ss_pred hhhhhhHHhhccchHH-----------HHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhH
Confidence 3346799998888865 5799999999999996 999999999999999999865567899999999999
Q ss_pred eeeeC---CccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeecccee----eeCceeeeCCccccCCCCCC
Q 010812 422 ENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSV----RFPLQLVLGRDLLVTPSAEV 494 (500)
Q Consensus 422 E~L~g---~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V----~FP~~LDL~~y~~~~~~~~~ 494 (500)
|.|+| +.|++|+++. .++|++.|.++|++|||||+||.-.-+++.||..+- +||.+..+.+-.-..-.-.+
T Consensus 277 e~L~g~d~W~CpkC~~k~--ss~K~~~I~~lP~~LII~i~RF~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P 354 (415)
T COG5533 277 EKLEGKDAWRCPKCGRKE--SSRKRMEILVLPDVLIIHISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIP 354 (415)
T ss_pred HhhcCcccccCchhcccc--cchheEEEEecCceEEEEeeeeeEEeecccccCCCcchhccCCceecccccccCCCCCCc
Confidence 99987 5577777665 899999999999999999999996655556666653 34444433332222122345
Q ss_pred cceee
Q 010812 495 LQFLN 499 (500)
Q Consensus 495 ~~Y~L 499 (500)
.+|+|
T Consensus 355 ~~Y~L 359 (415)
T COG5533 355 RKYSL 359 (415)
T ss_pred cceeE
Confidence 67776
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-35 Score=291.00 Aligned_cols=152 Identities=32% Similarity=0.499 Sum_probs=138.0
Q ss_pred ccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHH
Q 010812 203 GLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSM 282 (500)
Q Consensus 203 GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~ 282 (500)
||+|+||||||||+||+|+++|+||+++.+..
T Consensus 1 Gl~N~g~tCy~ns~lQ~L~~~~~f~~~~~~~~------------------------------------------------ 32 (240)
T cd02662 1 GLVNLGNTCFMNSVLQALASLPSLIEYLEEFL------------------------------------------------ 32 (240)
T ss_pred CCcCCCCccHHHHHHHHHHCCHHHHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999987522
Q ss_pred HHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccc
Q 010812 283 FEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRT 362 (500)
Q Consensus 283 f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~ 362 (500)
.||||||||..||+.|+..
T Consensus 33 --------------------~QqDa~EFl~~ll~~l~~~----------------------------------------- 51 (240)
T cd02662 33 --------------------EQQDAHELFQVLLETLEQL----------------------------------------- 51 (240)
T ss_pred --------------------hhcCHHHHHHHHHHHHHHh-----------------------------------------
Confidence 5999999999999999931
Q ss_pred cccCCcccccccccEEEeEEEeC-CCcccc-cccCCccceeccccCc---ccCHHHHHhhcccceeeeCCccccCCCCce
Q 010812 363 QSFLPSALSDIFGGQLKSVVKAQ-GNKASA-TVQPFLLLHLDIYSEA---VHTIEDALRLFSAPENLEGYRTSSTGNAGV 437 (500)
Q Consensus 363 ~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~-r~e~F~~LsL~Ip~~~---~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~ 437 (500)
+.++|.|++.+.++|. |++.+. +.|+|++|+|+||... ..+|++||+.|+.+|.++++.|+.|
T Consensus 52 -------i~~~F~g~~~~~i~C~~C~~~s~~~~e~f~~LsL~ip~~~~~~~~sl~~~L~~~~~~E~l~~~~C~~C----- 119 (240)
T cd02662 52 -------LKFPFDGLLASRIVCLQCGESSKVRYESFTMLSLPVPNQSSGSGTTLEHCLDDFLSTEIIDDYKCDRC----- 119 (240)
T ss_pred -------ccCccccEEEEEEEeCCCCCccCcceeeeeeeEecccccCCCCCCCHHHHHHHhcCcccccCcCCCCC-----
Confidence 4789999999999996 988765 5999999999998654 5799999999999999999999988
Q ss_pred eeEEEEEEcccCccceEEEecceeeCC-CCeeeccceeeeCcee
Q 010812 438 VTAKKSVKIQTLSKILILHLMRFSYGS-QGSTKLHKSVRFPLQL 480 (500)
Q Consensus 438 ~~a~k~~~i~~lP~vLiIhLkRF~~d~-~~~~Ki~~~V~FP~~L 480 (500)
+..|.++|+||+|||+||.|+. +...|++++|.||+.|
T Consensus 120 -----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l 158 (240)
T cd02662 120 -----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL 158 (240)
T ss_pred -----eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence 5689999999999999999996 6779999999999998
No 17
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-36 Score=343.04 Aligned_cols=291 Identities=23% Similarity=0.288 Sum_probs=238.8
Q ss_pred CCCCCCCCccccccCC-CCCcccccccccCCC-CCCC-------CccCcccCC-C--CccccCCCCC-CccccCCCchhH
Q 010812 147 HANPSPISKFHVLCDG-NIDGRDQNAAACNSS-ISGS-------KEVPMKAIN-E--PVKSVKDLLP-RGLINSGNLCFL 213 (500)
Q Consensus 147 ~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~-~--~~~~~~~~~~-~GL~NlGNTCYm 213 (500)
-.-+.++|.|...+.+ +|..|+.++.+..+. +... .+.....++ . ....++..+. +||.|+||||||
T Consensus 103 ~~~~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~d~k~~tg~~vGL~N~GaTCY~ 182 (1093)
T KOG1863|consen 103 DPEKAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSLMNPYDSKRLTGFPVGLKNLGATCYV 182 (1093)
T ss_pred hhhhhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcccchhhhhhcCCCCccccCCCceeee
Confidence 4456888999999999 999999999888873 2221 111222222 2 3444555555 999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHhhc-CCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHHHHHHHHhhCC
Q 010812 214 NATLQALMSCSPFVQLLQELRT-RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTP 292 (500)
Q Consensus 214 NSvLQ~L~~~p~fr~~l~~~~~-~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~p 292 (500)
||+||+||+++.||+.|+.+.. .........++.+|+.||..|+... .+++.|..+...+....
T Consensus 183 NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~~v~~~lq~lF~~LQ~s~--------------~k~Vdt~~~~~~~~~~~- 247 (1093)
T KOG1863|consen 183 NSLLQVLFLIPEFRRAVYSIPPFTGHEDPRRSIPLALQRLFYELQMSK--------------RKYVDTSELTKSLGWDS- 247 (1093)
T ss_pred hHHHHHHHccHHHHHHHhcCCCCCCcccccchHHHHHHHHHHHHhhcC--------------CCCcCchhhhhhhhccc-
Confidence 9999999999999999999883 2223344569999999999999753 66999999988877643
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCccccc
Q 010812 293 DVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSD 372 (500)
Q Consensus 293 ~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~ 372 (500)
..+++|||+|||++.|+|.|++.+..... ...|.+
T Consensus 248 ------~~~~~QqDvqEf~~~l~d~LE~~~~~~~~---------------------------------------~~~l~~ 282 (1093)
T KOG1863|consen 248 ------NDSFEQQDVQEFLTKLLDWLEDSMIDAKV---------------------------------------ENTLQD 282 (1093)
T ss_pred ------ccHHhhhhHHHHHHHHHHHHHhhccchhh---------------------------------------hhhhhh
Confidence 25689999999999999999998865432 134789
Q ss_pred ccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCcc
Q 010812 373 IFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSK 451 (500)
Q Consensus 373 lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~ 451 (500)
+|.|.+.+.+.|. |+..+.+.|.|+++.|++. +..+|.++|+.|+..|.++|++++++++++.+.|.+.+.+.+||+
T Consensus 283 lf~g~~~~~i~c~~~~~~s~r~e~f~d~ql~~~--g~~nl~~sf~~y~~~E~l~gdn~~~~~~~~~~~a~k~~~f~~lPp 360 (1093)
T KOG1863|consen 283 LFTGKMKSVIKCIDVDFESSRSESFLDLQLNGK--GVKNLEDSLHLYFEAEILLGDNKYDAECHGLQDAKKGVLFDSLPP 360 (1093)
T ss_pred hhcCCcceEEEEEeeeeeccccccccCcccccc--chhhHHHHHHHhhhHHHhcCCccccccccchhhhhcceeeccCCc
Confidence 9999999999996 8888999999999999997 788999999999999999999999889999999999999999999
Q ss_pred ceEEEecceeeC--CCCeeeccceeeeCceeeeCCcccc--CCCCCC-cceee
Q 010812 452 ILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLV--TPSAEV-LQFLN 499 (500)
Q Consensus 452 vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~--~~~~~~-~~Y~L 499 (500)
||.|||+||.|+ .+...|+++++.||..|+|++|+-. ....+. +.|+|
T Consensus 361 vl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~~~~~~~~~~~~y~l 413 (1093)
T KOG1863|consen 361 VLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSRFKAEESERSAVYSL 413 (1093)
T ss_pred hhhhhhhheeeeccCCceeehhhccCCccccccchhccccchhhhhccceecc
Confidence 999999999999 6778999999999999999999763 222233 36765
No 18
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-34 Score=298.04 Aligned_cols=241 Identities=22% Similarity=0.315 Sum_probs=200.2
Q ss_pred cCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHh-hcCCC--CCCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 010812 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQEL-RTRDI--PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (500)
Q Consensus 196 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~-~~~~~--~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~ 272 (500)
.-..+++||+|+||+||||||||+|++++.|...+... +.-++ ......+-++|.+|...|.....+.- ..+ .
T Consensus 302 ~~gpgytGl~NlGNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p-~~~---~ 377 (763)
T KOG0944|consen 302 LFGPGYTGLINLGNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKP-LMD---P 377 (763)
T ss_pred ccCCCccceeecCcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCc-cCC---c
Confidence 34567799999999999999999999999999877654 11111 23345688999999999887654321 001 1
Q ss_pred CCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhC
Q 010812 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (500)
Q Consensus 273 ~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (500)
..+..|+|.+|+.++++-+|.| ..++||||+|||.+||+.|.+......
T Consensus 378 ~~qngIsP~mFK~~igknHpeF-----st~~QQDA~EFllfLl~ki~~n~rs~~-------------------------- 426 (763)
T KOG0944|consen 378 SNQNGISPLMFKALIGKNHPEF-----STNRQQDAQEFLLFLLEKIRENSRSSL-------------------------- 426 (763)
T ss_pred cccCCcCHHHHHHHHcCCCccc-----cchhhhhHHHHHHHHHHHHhhcccccC--------------------------
Confidence 1246899999999999999988 999999999999999999997432100
Q ss_pred CCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceecccc----CcccCHHHHHhhcccceeeeCC
Q 010812 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS----EAVHTIEDALRLFSAPENLEGY 427 (500)
Q Consensus 353 ~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~----~~~~sL~d~L~~~~~~E~L~g~ 427 (500)
..+.++|...+..++.|. |.++..+.++-+.|+|+||. ...+++..||+.||.+ .++++
T Consensus 427 ---------------~nptd~frF~ve~Rv~C~~c~kVrYs~~~~~~i~lpv~~~~~v~~~v~~~~cleaff~p-q~~df 490 (763)
T KOG0944|consen 427 ---------------PNPTDLFRFEVEDRVSCLGCRKVRYSYESEYLIQLPVPMTNEVREKVPISACLEAFFEP-QVDDF 490 (763)
T ss_pred ---------------CCHHHHHHhhhhhhhhhhccccccccchhheeeEeeccccccccccCCHHHHHHHhcCC-cchhh
Confidence 125799999999999997 99999999999999999974 2347999999999999 77779
Q ss_pred ccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccccC
Q 010812 428 RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVT 489 (500)
Q Consensus 428 ~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~ 489 (500)
+|..|+.+. .|.|.+.|.+||+|||||++||.|.++..+|+...|+.|+.|||+.|...+
T Consensus 491 ~s~ac~~K~--~a~kt~~~ksfP~yLiiqv~rf~~~dw~pkKld~~iempe~ldls~~rs~g 550 (763)
T KOG0944|consen 491 WSTACGEKK--GATKTTRFKSFPDYLIIQVGRFTLQDWVPKKLDVSIEMPEELDLSSYRSKG 550 (763)
T ss_pred hhHhhcCcc--ccccccccccCCceEEEEeeEEEecCceeeeeccceecchhhchhhhhhcC
Confidence 999898876 899999999999999999999999989899999999999999999987655
No 19
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-33 Score=287.43 Aligned_cols=211 Identities=18% Similarity=0.234 Sum_probs=162.6
Q ss_pred CCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCC------------CC---------CCCcHHHHHHHHHHhcCCC
Q 010812 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI------------PK---------AGYPTLTAFVGFVSDFDTP 259 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~------------~~---------~~~~l~~~l~~L~~~l~~~ 259 (500)
|+||.|+||||||||+||+|+++|+||++++.+..... .. ...+++.+|+.||..|+..
T Consensus 1 PvGL~NlGNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~~s 80 (343)
T cd02666 1 PAGLDNIGNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLIHS 80 (343)
T ss_pred CCCcccCCceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHHhC
Confidence 69999999999999999999999999999987652110 00 0125889999999999854
Q ss_pred CCCCCccccccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccc
Q 010812 260 SGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTAL 339 (500)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~ 339 (500)
....+.|..++..+. ..||||+||+..||++||.+++........ ..
T Consensus 81 --------------~~~~v~P~~~l~~l~-------------~~QQDa~Ef~~~lld~Le~~lk~~~~~~~~---~~--- 127 (343)
T cd02666 81 --------------NTRSVTPSKELAYLA-------------LRQQDVTECIDNVLFQLEVALEPISNAFAG---PD--- 127 (343)
T ss_pred --------------CCCccCcHHHHHhcc-------------ccccchHHHHHHHHHHHHHHhcCccccccC---cc---
Confidence 367899999886432 289999999999999999998743321110 00
Q ss_pred cchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CC---cccccccCCccceecccc--------Cc
Q 010812 340 VSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GN---KASATVQPFLLLHLDIYS--------EA 407 (500)
Q Consensus 340 ~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~---~~S~r~e~F~~LsL~Ip~--------~~ 407 (500)
... .....++|.++|.|++.+.++|+ |+ ..+.+.|+|++|+|+|+. .+
T Consensus 128 ---------~~~-----------~~~~~~~I~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~~~~ 187 (343)
T cd02666 128 ---------TED-----------DKEQSDLIKRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVVLLE 187 (343)
T ss_pred ---------ccc-----------ccchhhhhhHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccccCC
Confidence 000 00112678999999999999996 64 789999999999999974 14
Q ss_pred ccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccc
Q 010812 408 VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLL 487 (500)
Q Consensus 408 ~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~ 487 (500)
..+|++||+.|+..|. |.+||+||.|||+ +.+......+.+++++||...|..+++.
T Consensus 188 ~~~L~d~L~~~~~~e~----------------------~~~~P~vl~~qlq-~~~~~~~~~~~~dry~~~~~~~~~~~l~ 244 (343)
T cd02666 188 PKDLYDALDRYFDYDS----------------------LTKLPQRSQVQAQ-LAQPLQRELISMDRYELPSSIDDIDELI 244 (343)
T ss_pred CCCHHHHHHHhcChhh----------------------hccCCHHHHHHHh-hcccccchheeeccccccchHHHHHHHH
Confidence 6899999999998776 8899999999999 4444556677888888888777766654
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.8e-33 Score=298.86 Aligned_cols=273 Identities=29% Similarity=0.382 Sum_probs=210.6
Q ss_pred cCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhc-C----CCCCCCCcHHHHHHHHHHhcCCCCCCCCcccccc
Q 010812 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT-R----DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNIS 270 (500)
Q Consensus 196 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~-~----~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~ 270 (500)
....+.+||.|+|||||||++||||+.|+.||..++.... . .......++..++..++..+|...
T Consensus 296 ~~~~~~~GL~NlGntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~---------- 365 (653)
T KOG1868|consen 296 TDVFGCPGLRNLGNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH---------- 365 (653)
T ss_pred ccccCCceeccCCcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC----------
Confidence 3445779999999999999999999999999965544321 1 123344578888899998888653
Q ss_pred ccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCC--ccC-----CCcccccchh
Q 010812 271 VLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST--SIN-----GANTALVSLA 343 (500)
Q Consensus 271 ~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~--~~~-----~~~~~~~~~~ 343 (500)
....+.|..|+..+.++.+.| .++.|||||||+..++|.||+++........ ... .......+..
T Consensus 366 ---~~~s~~P~~f~~~~~~y~~~~-----~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~ 437 (653)
T KOG1868|consen 366 ---GQFSVLPRRFIRVLKRYSPNF-----SGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKK 437 (653)
T ss_pred ---CceecCcHHHHHHHhhccccc-----ccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccch
Confidence 366789999999999998887 7789999999999999999999986543211 000 1111112222
Q ss_pred hhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcc----cCHHHHHhhc
Q 010812 344 EEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAV----HTIEDALRLF 418 (500)
Q Consensus 344 ~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~----~sL~d~L~~~ 418 (500)
...+|.......+ +.|.++|.|++.+.++|. |++.+.++++|++++|+||..+. ++|++|++.|
T Consensus 438 s~~~w~~~~~~~d-----------~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~~~~L~~C~~~f 506 (653)
T KOG1868|consen 438 SLAEWLRYLEEED-----------SKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGGKVSLEDCLSLF 506 (653)
T ss_pred hHHHHHhhccccc-----------hHHHHHHHHHHHhheehhhcCCcceeeecceeeEEecccccccccccchHhhhccc
Confidence 3456766655333 236899999999999996 99999999999999999987544 4599999999
Q ss_pred ccceeeeC---CccccCCCCceeeEE--EEEEcccCccceEEEecceeeCCCCeeeccceeeeCce-eeeCCccccCCCC
Q 010812 419 SAPENLEG---YRTSSTGNAGVVTAK--KSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSA 492 (500)
Q Consensus 419 ~~~E~L~g---~~c~~C~~~~~~~a~--k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~-LDL~~y~~~~~~~ 492 (500)
+..|.+++ +.|+.|.... .+. |+..|.+||++|+|||+||.++.+...|...-|+||.. +|+.++... ..+
T Consensus 507 t~~ekle~~~~w~Cp~c~~~~--~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~~~-~~~ 583 (653)
T KOG1868|consen 507 TKEEKLEGDEAWLCPRCKHKE--SSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRFAE-KGN 583 (653)
T ss_pred cchhhcccccccCCccccCcc--cccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhccc-cCC
Confidence 99999999 6777777765 553 99999999999999999999997667899999999996 777765433 233
Q ss_pred CCcceeeC
Q 010812 493 EVLQFLNV 500 (500)
Q Consensus 493 ~~~~Y~Li 500 (500)
....|+|+
T Consensus 584 ~~~~Y~L~ 591 (653)
T KOG1868|consen 584 NPKSYRLY 591 (653)
T ss_pred CccceeeE
Confidence 34558885
No 21
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.9e-33 Score=292.42 Aligned_cols=234 Identities=24% Similarity=0.341 Sum_probs=197.5
Q ss_pred ccCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC-CCC--CCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 010812 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (500)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~-~~~--~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~ 271 (500)
+..+.+.|||+|-|+|||||+++|-|+++|.+|+.+..+... ..+ ..+..+++.++.+|..|-.
T Consensus 89 sRpp~gfVGLKNagatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s~~e~vl~~lQ~iF~hL~~------------- 155 (944)
T KOG1866|consen 89 SRPPEGFVGLKNAGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMSGDEKVLRHLQVIFGHLAA------------- 155 (944)
T ss_pred CCCCcceeeecCCCchHHHhhhhhhhhhcccccchhhhhcccccchhhcchHHHHHHHHHHHHHHHH-------------
Confidence 455667799999999999999999999999999987665433 111 2223389999999988754
Q ss_pred cCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHh
Q 010812 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETV 351 (500)
Q Consensus 272 ~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 351 (500)
+.-.++.|..|...++-..-.+ +..+||||-||+..|||.+++.+++....
T Consensus 156 -s~lQyyVPeg~Wk~Fr~~~~pl-----n~reqhDA~eFf~sLld~~De~LKklg~p----------------------- 206 (944)
T KOG1866|consen 156 -SQLQYYVPEGFWKQFRLWGEPL-----NLREQHDALEFFNSLLDSLDEALKKLGHP----------------------- 206 (944)
T ss_pred -HhhhhhcchhHHHHhhccCCcc-----chHhhhhHHHHHHHHHHHHHHHHHHhCCc-----------------------
Confidence 3356789999999988775444 78899999999999999999999876543
Q ss_pred CCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccc
Q 010812 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTS 430 (500)
Q Consensus 352 ~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~ 430 (500)
-++++.|+|.....-.|. |-+...+.|+|..|+|+|. ..+|+++|++|.+.|.|+|.+.|
T Consensus 207 ----------------~lf~n~f~G~ysdqKIC~~CpHRY~~eE~F~~l~l~i~---~~nLeesLeqfv~gevlEG~nAY 267 (944)
T KOG1866|consen 207 ----------------QLFSNTFGGSYSDQKICQGCPHRYECEESFTTLNLDIR---HQNLEESLEQFVKGEVLEGANAY 267 (944)
T ss_pred ----------------HHHHHHhcCccchhhhhccCCcccCccccceeeeeecc---cchHHHHHHHHHHHHHhcCcchh
Confidence 347899999999999997 9888899999999999995 78999999999999999996666
Q ss_pred cCCCCc-eeeEEEEEEcccCccceEEEecceeeC--CCCeeeccceeeeCceeeeCCccccC
Q 010812 431 STGNAG-VVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLVT 489 (500)
Q Consensus 431 ~C~~~~-~~~a~k~~~i~~lP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~~ 489 (500)
.|.+|. ++...|++.|.+||+||+||||||.|| +....|.|+.++||.+|||.||+.++
T Consensus 268 hCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg 329 (944)
T KOG1866|consen 268 HCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSG 329 (944)
T ss_pred hhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehh
Confidence 555443 457889999999999999999999999 56678999999999999999999864
No 22
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.4e-31 Score=259.57 Aligned_cols=148 Identities=38% Similarity=0.576 Sum_probs=129.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEE
Q 010812 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (500)
Q Consensus 303 ~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i 382 (500)
.||||+||+.+||+.|+. .|.++|.|++...+
T Consensus 21 ~QqDa~Ef~~~ll~~l~~------------------------------------------------~i~~~F~~~~~~~~ 52 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS------------------------------------------------IIVDLFQGQLKSRL 52 (230)
T ss_pred hhhhHHHHHHHHHHHHhh------------------------------------------------hHHheeCCEEeCcE
Confidence 499999999999999991 15799999999999
Q ss_pred EeC-CCcccccccCCccceeccccCc----ccCHHHHHhhcccceeeeC---CccccCCCCceeeEEEEEEcccCccceE
Q 010812 383 KAQ-GNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILI 454 (500)
Q Consensus 383 ~C~-c~~~S~r~e~F~~LsL~Ip~~~----~~sL~d~L~~~~~~E~L~g---~~c~~C~~~~~~~a~k~~~i~~lP~vLi 454 (500)
+|. |++.+.+.|+|+.|+|+||... ..+|+++|+.|+.+|.++| +.|+.|++.. .+.++..|.++|+||+
T Consensus 53 ~C~~C~~~~~~~e~~~~l~l~ip~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~--~~~~~~~i~~lP~iLi 130 (230)
T cd02674 53 TCLTCGKTSTTFEPFTYLSLPIPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKR--KATKKLTISRLPKVLI 130 (230)
T ss_pred EcCCCcCCcceecceeEEEEecccccCCCCCCCHHHHHHHhcCccccCCCCceeCCCCCCcc--ceEEEEEEecCChhhE
Confidence 996 9999999999999999998654 5799999999999999987 4566666655 8999999999999999
Q ss_pred EEecceeeCCCCeeeccceeeeCc-eeeeCCccccCCCCCCcceeeC
Q 010812 455 LHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 455 IhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
|||+||.++.+...|++++|.||. .|||.+|+.........+|+|+
T Consensus 131 i~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~ 177 (230)
T cd02674 131 IHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLY 177 (230)
T ss_pred eEhhheecCCCCcccCCceEeccccccccccccCcccCCCCceEEEE
Confidence 999999999877889999999996 5999999755556677889985
No 23
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2.1e-30 Score=249.87 Aligned_cols=138 Identities=16% Similarity=0.255 Sum_probs=113.4
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEE
Q 010812 304 QEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVK 383 (500)
Q Consensus 304 QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~ 383 (500)
|||||||++.|||.|++++........ ......++|.++|.|++.+.+.
T Consensus 22 QQDa~Ef~~~Lld~Le~~l~~~~~~~~-------------------------------~~~~~~~~i~~lF~G~~~~~~~ 70 (228)
T cd02665 22 QQDVSEFTHLLLDWLEDAFQAAAEAIS-------------------------------PGEKSKNPMVQLFYGTFLTEGV 70 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-------------------------------ccccccchHhhceEEEEEEEEE
Confidence 999999999999999999864321100 0001135689999999998777
Q ss_pred eCCCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeC
Q 010812 384 AQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG 463 (500)
Q Consensus 384 C~c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d 463 (500)
| |+..+.+.|+|++|+|+|. +..+|++||+.|+.+|.+++..|+.+. .+.++..|.+||+||+|||+||.|+
T Consensus 71 ~-~~~~s~~~E~F~~L~l~i~--~~~~L~e~L~~~~~ee~l~~~~~~~~~-----~~~~~~~i~~lP~vL~i~LkRF~~~ 142 (228)
T cd02665 71 L-EGKPFCNCETFGQYPLQVN--GYGNLHECLEAAMFEGEVELLPSDHSV-----KSGQERWFTELPPVLTFELSRFEFN 142 (228)
T ss_pred E-CCCcccccCccEEEEEEEC--CCCCHHHHHHHhhhhcccccccccchh-----hhhhhhhhhhCChhhEEEeEeeEEc
Confidence 7 5567899999999999997 568999999999999999987665432 5667788999999999999999999
Q ss_pred CCCeeeccceeeeCcee
Q 010812 464 SQGSTKLHKSVRFPLQL 480 (500)
Q Consensus 464 ~~~~~Ki~~~V~FP~~L 480 (500)
.+...|++++|+||.+|
T Consensus 143 ~~~~~Ki~~~v~FP~~l 159 (228)
T cd02665 143 QGRPEKIHDKLEFPQII 159 (228)
T ss_pred CCccEECCEEEEeeCcc
Confidence 77789999999999987
No 24
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.96 E-value=1.3e-29 Score=248.49 Aligned_cols=202 Identities=30% Similarity=0.492 Sum_probs=153.5
Q ss_pred CCccccCCCchhHHHHHHHHhCCHHHHHHHHHh------hcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 010812 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQEL------RTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~------~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (500)
|+||.|.||||||||+||+|+++|+|++++... ..........+++.+|+.|+..|+... ..
T Consensus 1 ~~Gl~N~gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~------------~~ 68 (269)
T PF00443_consen 1 PVGLQNIGNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSN------------SS 68 (269)
T ss_dssp --EESBSSSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSC------------SS
T ss_pred CCCcEeCCCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhc------------cc
Confidence 689999999999999999999999999999875 222333344679999999999998652 24
Q ss_pred CCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCC
Q 010812 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (500)
Q Consensus 275 ~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (500)
...+.|..|..++....+.| ..+.||||+||+..||+.|++++..... ...|......
T Consensus 69 ~~~i~~~~~~~~l~~~~~~~-----~~~~qqDa~E~l~~ll~~l~~~~~~~~~-----------------~~~~~~~~~~ 126 (269)
T PF00443_consen 69 DSSISPSDFINALSSINPSF-----SNGEQQDAHEFLSFLLDWLDEEFNSSFK-----------------RKSWKNTNSS 126 (269)
T ss_dssp SSEEHCHHHHHHHHHHCGGG-----GSSSTEEHHHHHHHHHHHHHHHHTSCSS-----------------HHHHHHHHCC
T ss_pred ccceeecccccccccccccc-----ccccccchhhhhcccccccchhhccccc-----------------cccccccccc
Confidence 67899999999999987765 7899999999999999999998854221 1112222111
Q ss_pred CCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCC
Q 010812 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTG 433 (500)
Q Consensus 355 n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~ 433 (500)
. .+++.++|.+++...+.|. |+..
T Consensus 127 ~-----------~~~~~~~f~~~~~~~~~c~~c~~~-------------------------------------------- 151 (269)
T PF00443_consen 127 E-----------DSLISDLFGGQFESSIKCSSCKNS-------------------------------------------- 151 (269)
T ss_dssp E-----------ESHHHHHH-EEEEEEEEETTTTCE--------------------------------------------
T ss_pred c-----------cccccccccccccccccccccccc--------------------------------------------
Confidence 1 2567899999999999996 7765
Q ss_pred CCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeC-ceeeeCCccccCCC--CCCcceeeC
Q 010812 434 NAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFP-LQLVLGRDLLVTPS--AEVLQFLNV 500 (500)
Q Consensus 434 ~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP-~~LDL~~y~~~~~~--~~~~~Y~Li 500 (500)
...|.++|+||+|||+||.|+. ....|+.++|.|| .+|||++|+..... .....|+|+
T Consensus 152 ---------~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~ 214 (269)
T PF00443_consen 152 ---------QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLV 214 (269)
T ss_dssp ---------EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEE
T ss_pred ---------ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeeh
Confidence 5688999999999999998884 3468999999999 69999999865432 245789884
No 25
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.2e-28 Score=245.07 Aligned_cols=230 Identities=20% Similarity=0.330 Sum_probs=189.6
Q ss_pred CCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCC---CCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCC
Q 010812 201 PRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP---KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRP 277 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~---~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~ 277 (500)
++||.|+||+||+||+||.|+....+..-+..+...... ....++.|+|.+|+..|..... ......
T Consensus 303 ~~GliNlGNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P~~~l~CQl~kll~~mk~~p~----------~~y~ng 372 (749)
T COG5207 303 YVGLINLGNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNPLECLFCQLMKLLSKMKETPD----------NEYVNG 372 (749)
T ss_pred ccceEecCCeeeHHHHHHHHhccccchhhhhhhccceeeeecCCchhHHHHHHHHHhhccCCCC----------ccccCC
Confidence 699999999999999999999998887765443322221 2335678888888887754321 245678
Q ss_pred cChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCc
Q 010812 278 FSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKS 357 (500)
Q Consensus 278 isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s 357 (500)
|+|..|+.+++.-++.| ..++||||+|||.+||+.|......
T Consensus 373 i~p~~fk~~igq~h~eF-----g~~~QQDA~EFLlfLL~kirk~~~S--------------------------------- 414 (749)
T COG5207 373 ISPLDFKMLIGQDHPEF-----GKFAQQDAHEFLLFLLEKIRKGERS--------------------------------- 414 (749)
T ss_pred cChhhHHHHHcCCchhh-----hhhhhhhHHHHHHHHHHHHhhccch---------------------------------
Confidence 99999999999998887 8999999999999999999974421
Q ss_pred ccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccC-cccCHHHHHhhcccceeeeCCccccCCCC
Q 010812 358 AVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (500)
Q Consensus 358 ~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~-~~~sL~d~L~~~~~~E~L~g~~c~~C~~~ 435 (500)
...+.|.++|...+..++.|. |..++..+++...+.+++... ...++.++++.||.+.+++ +.|..|+.+
T Consensus 415 -------~~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~~~~i~i~le~n~E~~di~~~v~a~f~pdtiE-~~CenCk~K 486 (749)
T COG5207 415 -------YLIPPITSLFEFEVERRLSCSGCMDVSYSYESMLMICIFLEGNDEPQDIRKSVEAFFLPDTIE-WSCENCKGK 486 (749)
T ss_pred -------hcCCCcchhhhhhhcceecccccccccccccceEEEEeecccCcchhhHHHHHHheECcccee-eehhhhcCc
Confidence 112457899999999999996 999999999999998888532 3478999999999999998 889888765
Q ss_pred ceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCce--eeeCCcccc
Q 010812 436 GVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ--LVLGRDLLV 488 (500)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~--LDL~~y~~~ 488 (500)
. .|.+...|.+||++||||..||.+.++...|+..++.+-.. +++++|+..
T Consensus 487 ~--~a~~k~~~kslPk~LIlq~~R~~lqny~v~kls~pi~~~~D~m~~~~s~msk 539 (749)
T COG5207 487 K--KASRKPFIKSLPKYLILQVGRYSLQNYKVEKLSDPIEMRSDDMIKLGSFMSK 539 (749)
T ss_pred c--cccccchhhccCceeEEecceeeccceeehhccCceEEccccccchhhHhhc
Confidence 5 89999999999999999999999998888899999888774 899988764
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.3e-27 Score=228.03 Aligned_cols=167 Identities=34% Similarity=0.494 Sum_probs=136.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEE
Q 010812 303 RQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVV 382 (500)
Q Consensus 303 ~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i 382 (500)
.||||+|||..+|+.|+.++........ ......+.|.++|.|.+...+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~~~-------------------------------~~~~~~~~i~~~F~~~~~~~~ 69 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKRTS-------------------------------DSSSLKSLIHDLFGGKLESTI 69 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc-------------------------------ccccCCchhhhhcccEEeeEE
Confidence 4999999999999999999875332100 000112568999999999999
Q ss_pred EeC-CCcccccccCCccceeccccCc--ccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecc
Q 010812 383 KAQ-GNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMR 459 (500)
Q Consensus 383 ~C~-c~~~S~r~e~F~~LsL~Ip~~~--~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkR 459 (500)
.|. |+..+.+...+..+.|++|... ..+|+++|+.++..|.+++.+|.+|+....+.+.++..|.++|+||+|||+|
T Consensus 70 ~c~~c~~~~~~~~~~~~l~l~~~~~~~~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R 149 (255)
T cd02257 70 VCLECGHESVSTEPELFLSLPLPVKGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKR 149 (255)
T ss_pred ECCCCCCCccCcccceeEEeeccCCCCCCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeec
Confidence 996 8888888888999999998654 6899999999999999999999999843334889999999999999999999
Q ss_pred eeeCC-CCeeeccceeeeCceeeeCCcccc-----CCCCCCcceeeC
Q 010812 460 FSYGS-QGSTKLHKSVRFPLQLVLGRDLLV-----TPSAEVLQFLNV 500 (500)
Q Consensus 460 F~~d~-~~~~Ki~~~V~FP~~LDL~~y~~~-----~~~~~~~~Y~Li 500 (500)
|.++. ....|++++|.||++|++.+++.. ........|+|+
T Consensus 150 ~~~~~~~~~~k~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~ 196 (255)
T cd02257 150 FSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELV 196 (255)
T ss_pred eeeccccccccCCCeEeCCCcccCccccccccccccccCCCccEEEE
Confidence 99986 667899999999999999998752 224556789884
No 27
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-27 Score=269.94 Aligned_cols=182 Identities=23% Similarity=0.384 Sum_probs=154.3
Q ss_pred cccCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhc------CCCCCCCCcHHHHHHHHHHhcCCCCCCCCccc
Q 010812 194 KSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT------RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKK 267 (500)
Q Consensus 194 ~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~ 267 (500)
......+.+||.|+|||||||+.+|||.+++.+++++..... .+.......+..++..++.++|...
T Consensus 239 ~~~~~~g~~Gl~nlGntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~------- 311 (842)
T KOG1870|consen 239 SSPSERGETGLSNLGNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN------- 311 (842)
T ss_pred cCCCcccccccccCCccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC-------
Confidence 344556789999999999999999999999999999865332 2233455678899999999999653
Q ss_pred cccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCC-ccCCCcccccchhhhh
Q 010812 268 NISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGEST-SINGANTALVSLAEED 346 (500)
Q Consensus 268 ~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~-~~~~~~~~~~~~~~~~ 346 (500)
...+.|..++..+..+.+.| .|+.|||.|||+.+|+|.||+++.+...+++ ...+..+..+...+..
T Consensus 312 -------~~~v~~~~~~~~~~~~a~~~-----~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~ 379 (842)
T KOG1870|consen 312 -------KSAVAPTSFRTSLASFASEF-----SGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAE 379 (842)
T ss_pred -------ccccCchhhhhhhhhccccc-----cCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHH
Confidence 34799999999999988766 9999999999999999999999998877744 3455666777788889
Q ss_pred hHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceecccc
Q 010812 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYS 405 (500)
Q Consensus 347 ~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~ 405 (500)
.|..+..+++++ |.++|.|..++.+.|. |++.++++++|..|+|++|.
T Consensus 380 ~~~~~~~~~~s~-----------i~d~~~~~~~S~~~c~~C~~~svt~d~f~~Lslp~p~ 428 (842)
T KOG1870|consen 380 VWDYHLKRNRSV-----------IVDLFDGTYKSTLQCPTCGKVSVTFDPFGYLSLPLPG 428 (842)
T ss_pred HHHhhhhhccce-----------eeeeecceecccccCccCCCceEEeeccccccccCCC
Confidence 999999999865 5799999999999996 99999999999999999973
No 28
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.2e-27 Score=251.36 Aligned_cols=257 Identities=25% Similarity=0.321 Sum_probs=201.6
Q ss_pred CCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC-CC-CCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 010812 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DI-PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (500)
Q Consensus 197 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~-~~-~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (500)
-..+.+||+|+|+||+||++||+|.+.+..+...+..... .. .....++.+++.+++..+|... .
T Consensus 157 ~~~~l~g~~n~g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~-------------~ 223 (492)
T KOG1867|consen 157 TALGLRGLRNLGSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH-------------N 223 (492)
T ss_pred eeecccccccccHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC-------------C
Confidence 4456799999999999999999999888888776554332 22 2235789999999999999753 2
Q ss_pred CCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCC
Q 010812 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (500)
Q Consensus 275 ~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (500)
..++.|..+...+++..+.+ .++.|||||||+..+++.+|.+... -.+..
T Consensus 224 ~~~~sp~~~l~~~~k~~~~~-----~g~~Qqda~eF~~~~~~~~~~~~~~-~~k~~------------------------ 273 (492)
T KOG1867|consen 224 RTPYSPFELLNLVWKHSPNL-----AGYEQQDAHEFLIALLDRLHREKDD-CGKSL------------------------ 273 (492)
T ss_pred CCCcChHHHHHHHHHhCccc-----ccccccchHHHHHHhcccccccccc-ccccc------------------------
Confidence 67899999999999998877 8899999999999999999987710 00000
Q ss_pred CCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc--------ccCHHHHHhhcccceeee
Q 010812 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA--------VHTIEDALRLFSAPENLE 425 (500)
Q Consensus 355 n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~--------~~sL~d~L~~~~~~E~L~ 425 (500)
+..+..+.+++++...|.|.+.+.++|. |...|.+.++|++|+|+||..- ..++.+||+.+...|.+.
T Consensus 274 ---~~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~S~~~dpf~disL~i~~~~~~~~~~~~~~~~~~cl~~~~~~~~~~ 350 (492)
T KOG1867|consen 274 ---IASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSKSTTYDPFMDISLDIPDQFTSSSVRSPELTLLDCLDRFTRSEQLG 350 (492)
T ss_pred ---ccccCCcccccccceeecceeccceeehhhcceeeeccCccceeeecchhccCcccccchhhhhhhhhhhhhhhhcC
Confidence 0001111346889999999999999996 9998999999999999997421 256999999998888765
Q ss_pred CCccccCCCCc-eeeEEEEEEcccCccceEEEecceeeCCCC-eeeccceeeeCceeeeCCccccC--C--CCCCcceee
Q 010812 426 GYRTSSTGNAG-VVTAKKSVKIQTLSKILILHLMRFSYGSQG-STKLHKSVRFPLQLVLGRDLLVT--P--SAEVLQFLN 499 (500)
Q Consensus 426 g~~c~~C~~~~-~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~-~~Ki~~~V~FP~~LDL~~y~~~~--~--~~~~~~Y~L 499 (500)
...++.|..+. ++.+.|+..|.++|.+|.+||+||.+.... ..|+.+.|.||..|+|.+|+... + ..+...|+|
T Consensus 351 ~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L 430 (492)
T KOG1867|consen 351 KDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYEL 430 (492)
T ss_pred cccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccccccccCCCCCceEEE
Confidence 54444443322 459999999999999999999999999433 34999999999999999999852 2 335688987
No 29
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=6.6e-27 Score=229.16 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=115.9
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEE
Q 010812 300 GRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLK 379 (500)
Q Consensus 300 ~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~ 379 (500)
.+++||||||||++|||.|++++......... .+++. ......++|.|++.
T Consensus 29 ~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~----------------------~~~~~-------~~~~~~~~F~~~l~ 79 (245)
T cd02673 29 DNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPP----------------------SNIEI-------KRLNPLEAFKYTIE 79 (245)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHhhcccCCC----------------------Ccccc-------cccCHhHheeeEEE
Confidence 88999999999999999999987542111000 00000 00113578999999
Q ss_pred eEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEec
Q 010812 380 SVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLM 458 (500)
Q Consensus 380 s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLk 458 (500)
+.++|. |++++.+.|+|++|+|+|+......|+++++.|.+.+.++ +.|+.|++. .|.++.+|.++|+||+|||+
T Consensus 80 s~i~C~~C~~~s~~~e~~~~L~L~i~~~~~~~le~l~~~~~~~~~~e-~~C~~C~~~---~a~k~~~i~~~P~vL~i~lk 155 (245)
T cd02673 80 SSYVCIGCSFEENVSDVGNFLDVSMIDNKLDIDELLISNFKTWSPIE-KDCSSCKCE---SAISSERIMTFPECLSINLK 155 (245)
T ss_pred eEEEecCCCCeeeeccccceeccccccCCcchHHHHHHHhhcccccC-ccCCCCCCc---cceeechhhhCChhhEEeeE
Confidence 999995 9999999999999999998654577899999888888875 889999764 68888899999999999999
Q ss_pred ceeeCCCCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 459 RFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 459 RF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
||.+.. ++...+.+ ..++|.+|+. ....|+|+
T Consensus 156 Rf~~~~----~~~~~~~~-~~~~~~~~~~-----~~~~Y~L~ 187 (245)
T cd02673 156 RYKLRI----ATSDYLKK-NEEIMKKYCG-----TDAKYSLV 187 (245)
T ss_pred eeeecc----cccccccc-cccccccccC-----CCceEEEE
Confidence 998863 12222222 2456766653 34557773
No 30
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=9.3e-27 Score=230.91 Aligned_cols=285 Identities=36% Similarity=0.545 Sum_probs=220.2
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC--CCCCCCcHHHHHHHHHHhcCCCCCCC------Cc----
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD--IPKAGYPTLTAFVGFVSDFDTPSGGS------SK---- 265 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~--~~~~~~~l~~~l~~L~~~l~~~~~~~------~~---- 265 (500)
+..|+|+.|-||-|||||+||+|+.|++|.+.+..+.... ......+++.++..+..++....... .+
T Consensus 25 ~i~Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~~~~~~~~~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~ 104 (420)
T KOG1871|consen 25 PIDPRGSINKCNICFMNSILQALLYCSPFYNLLELIKRADGTVKEGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEH 104 (420)
T ss_pred ccCCccccccceeEeeHHHHHHHHhCccHHHHHHhhhhhcCceecccchhHHHHHHHHhhccccchhhhhhhccCCcccc
Confidence 3779999999999999999999999999999987765221 11345678888888887776332211 00
Q ss_pred --c--ccccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccC--------
Q 010812 266 --K--KNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-------- 333 (500)
Q Consensus 266 --~--~~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~-------- 333 (500)
. .......+..++-|..+...+... +.| ++...|.|.||.|||..+||.||+++.++...-...+
T Consensus 105 ~~~~ses~~~d~~~dav~~d~~~~~l~t~-~~~--e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~~ 181 (420)
T KOG1871|consen 105 VVEKSESNKSDLQGDAVKPDPIYLDLLTM-SRF--ESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRGL 181 (420)
T ss_pred ccchhhhhhhcccCccccCCchhhhcccC-Cch--hhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCccccccccc
Confidence 0 000122344455555555444442 222 3446799999999999999999999986544221111
Q ss_pred --------CCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeCCCcccccccCCccceecccc
Q 010812 334 --------GANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYS 405 (500)
Q Consensus 334 --------~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~c~~~S~r~e~F~~LsL~Ip~ 405 (500)
..........+..+|..++..++..+.+..++.+++|+++|+|++++.+.-...++|...+||..|+|+|-.
T Consensus 182 i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS~tlqPF~tlqldiq~ 261 (420)
T KOG1871|consen 182 INNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKESATLQPFFTLQLDIQS 261 (420)
T ss_pred ccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceeccccccccccCccceeeeeeec
Confidence 111111223466789999999999999999999999999999999999999899999999999999999987
Q ss_pred CcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeC-CCCeeeccceeeeCceeeeCC
Q 010812 406 EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGR 484 (500)
Q Consensus 406 ~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d-~~~~~Ki~~~V~FP~~LDL~~ 484 (500)
....+++++|..+...|.+.++.-. .+ +-+.+.+++.+.+||++|++||+||.|. .++..|+-+.+++|..|.+..
T Consensus 262 ~~i~sv~~ales~~~re~lp~~st~-s~--~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~ 338 (420)
T KOG1871|consen 262 EKIHSVQDALESLVARESLPGYSTK-SG--QEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISK 338 (420)
T ss_pred cccCCHHHHhhccChhhcccceecC-CC--CeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeech
Confidence 7899999999999999999987644 22 3458999999999999999999999999 778899999999999999998
Q ss_pred cccc
Q 010812 485 DLLV 488 (500)
Q Consensus 485 y~~~ 488 (500)
-|..
T Consensus 339 ~~~s 342 (420)
T KOG1871|consen 339 NCFS 342 (420)
T ss_pred hhhc
Confidence 7774
No 31
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6e-28 Score=251.22 Aligned_cols=208 Identities=20% Similarity=0.269 Sum_probs=167.8
Q ss_pred ccCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 010812 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (500)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (500)
+..+.+++||.|..-|||+|+.+|+|+.+|.|+..++...
T Consensus 81 ~~~~~~yvglvnqa~~~~l~~~~~a~~~~~~~~~~~yts~---------------------------------------- 120 (1203)
T KOG4598|consen 81 DENGHRYVGLVNQASNDLLFEQSCAISLHDSGISKCYTSE---------------------------------------- 120 (1203)
T ss_pred ccCCcceEeehhhHHHHHHHHHhhhhccChhhhhhhhCCC----------------------------------------
Confidence 3456788999999999999999999999999999887211
Q ss_pred CCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCC
Q 010812 275 GRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPK 354 (500)
Q Consensus 275 ~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (500)
...+...++. +.++| ..-..+.|||.||+.+.++|+|+-..+.....
T Consensus 121 ~~~~et~dlt---~sfgw----~s~ea~~qhdiqelcr~mfdalehk~k~t~~~-------------------------- 167 (1203)
T KOG4598|consen 121 NDSLETKDLT---QSFGW----TSNEAYDQHDVQELCRLMFDALEHKWKGTEHE-------------------------- 167 (1203)
T ss_pred cccccchhhH---hhcCC----CcchhhhhhhHHHHHHHHHHHHHhhhcCchHH--------------------------
Confidence 1112222222 23322 22356799999999999999999877643321
Q ss_pred CCcccccccccCCcccccccccEEEeEEEe-CCCcccccccCCccceeccccCc----ccCHHHHHhhcccceeeeCCcc
Q 010812 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEA----VHTIEDALRLFSAPENLEGYRT 429 (500)
Q Consensus 355 n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C-~c~~~S~r~e~F~~LsL~Ip~~~----~~sL~d~L~~~~~~E~L~g~~c 429 (500)
..|++|+.|++...+.| .|+.++++.+.|++|.|++.+=+ ..+++++|..|.+||.|+|.+.
T Consensus 168 -------------~li~~ly~g~m~d~v~cl~c~~e~~~~d~fld~pl~v~pfg~~~ay~sieeal~afvqpe~ldg~nq 234 (1203)
T KOG4598|consen 168 -------------KLIQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELLDGSNQ 234 (1203)
T ss_pred -------------HHHHHHhcchHHHHHHHHHcCccccccceeecccccccCCcchhhhhhHHHHHHHhcChhhcCCccH
Confidence 35899999999999999 59999999999999999996432 3699999999999999999665
Q ss_pred ccCCCC-ceeeEEEEEEcccCccceEEEecceeeC--CCCeeeccceeeeCceeeeCCcccc
Q 010812 430 SSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYG--SQGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 430 ~~C~~~-~~~~a~k~~~i~~lP~vLiIhLkRF~~d--~~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
|-|.+| .+++|.|..+|..||-+|.||||||.|| ..-+.|+|++++||..|||..|+-.
T Consensus 235 y~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~ 296 (1203)
T KOG4598|consen 235 YMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNK 296 (1203)
T ss_pred HHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhh
Confidence 544332 2559999999999999999999999999 4556899999999999999999854
No 32
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.6e-26 Score=242.07 Aligned_cols=176 Identities=23% Similarity=0.312 Sum_probs=121.8
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCC------------------CCCCCcHHHHHHHHHHhcCCCC
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDI------------------PKAGYPTLTAFVGFVSDFDTPS 260 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~------------------~~~~~~l~~~l~~L~~~l~~~~ 260 (500)
+..+||.|+|||||+|||||+|+.+|.+|..|........ .....++..+|..|..+..
T Consensus 203 ~~VrGL~NLGNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~~~~s~l~~L~~el~~~g~lt~al~~~~e~~e--- 279 (877)
T KOG1873|consen 203 YIVRGLTNLGNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRPPLDSSLSPLFSELSSPGPLTYALANLLEMSE--- 279 (877)
T ss_pred ccccccccccchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecCccccchhhHHHhccCCcchhHHHHhhhhhhh---
Confidence 4459999999999999999999999999999987664321 0123455566666433332
Q ss_pred CCCCccccccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCcc-CCCcc-c
Q 010812 261 GGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSI-NGANT-A 338 (500)
Q Consensus 261 ~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~-~~~~~-~ 338 (500)
.....+.|..|...+....|+| .++.||||||+|++|||.|..|-.+...+.... .+.+. .
T Consensus 280 ------------~~ksv~~Pr~lF~~~C~k~pqF-----~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~ 342 (877)
T KOG1873|consen 280 ------------TTKSVITPRTLFGQFCSKAPQF-----RGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSS 342 (877)
T ss_pred ------------ccCCccCHHHHHHHHHHhCCcc-----cccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccc
Confidence 3467899999999999999998 999999999999999999987765544333100 01111 1
Q ss_pred ccchh-hhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeCCCcccccccCCccceecc
Q 010812 339 LVSLA-EEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDI 403 (500)
Q Consensus 339 ~~~~~-~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~c~~~S~r~e~F~~LsL~I 403 (500)
.++-. .+..-+.|+.... ++.++...|.|...+.+.|.-++++.+.+.|.+.++||
T Consensus 343 l~scle~~q~sKvYe~f~~---------~~~~vp~~~~~~~~s~~~~~~~~vss~~~s~~~~t~pv 399 (877)
T KOG1873|consen 343 LVSCLECGQKSKVYEPFKD---------LSLPVPLSFNGPLTSQIECQACDVSSVHESFLSETLPV 399 (877)
T ss_pred hhhhhhccchhhccccccc---------CCcccccccCCCcccchhhhccceeccchhhccccccc
Confidence 11100 1112222222221 22345688999999999997333889999999999998
No 33
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.93 E-value=4.8e-25 Score=222.45 Aligned_cols=249 Identities=18% Similarity=0.185 Sum_probs=203.6
Q ss_pred CccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcC-CCCCCCCccccccccCCCCCcCh
Q 010812 202 RGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFD-TPSGGSSKKKNISVLDIGRPFSP 280 (500)
Q Consensus 202 ~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~-~~~~~~~~~~~~~~~~~~~~isP 280 (500)
.||.|.+++||+||+||+|+++|++|+.+.... + +..+.|++++|+.||.+|. .. .+..+.+
T Consensus 1 ~GlEn~~~nsY~NslLQ~l~f~~~~r~~~l~h~--~-c~~e~cL~cELgfLf~ml~~~~--------------~g~~cq~ 63 (295)
T PF13423_consen 1 SGLENHIPNSYCNSLLQVLYFIPPLRNFLLSHL--E-CPKEFCLLCELGFLFDMLDSKA--------------KGINCQA 63 (295)
T ss_pred CCCcCCCCcchHHHHHHHHHhCHHHHHHHHhCc--C-CCccccHHHHHHHHHHHhhhhc--------------CCCcChH
Confidence 599999999999999999999999999998755 2 4567899999999999998 43 4778889
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccc
Q 010812 281 SMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVT 360 (500)
Q Consensus 281 ~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~ 360 (500)
..|.++++...... ..+.|+|+|+|+++||++|+.++............
T Consensus 64 sNflr~l~~~~~a~-----~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~~-------------------------- 112 (295)
T PF13423_consen 64 SNFLRALSWIPEAA-----ALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTSE-------------------------- 112 (295)
T ss_pred HHHHHHHhcCHHHH-----hcchhHHHHHHHHHHHHHHhHHHHhcCcccccccc--------------------------
Confidence 99999998863222 45679999999999999999998765432110000
Q ss_pred cccccCCcccccccccEEEeEEEe-CCCcccccccCCccceeccccC-cccCHHHHHhhcccceeeeCCccccCCCCcee
Q 010812 361 RTQSFLPSALSDIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSE-AVHTIEDALRLFSAPENLEGYRTSSTGNAGVV 438 (500)
Q Consensus 361 ~~~s~~~s~I~~lF~G~l~s~i~C-~c~~~S~r~e~F~~LsL~Ip~~-~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~ 438 (500)
.......+.|.++|+......++| .|+..+.+.+....+.|..|.. ...++.++|+.++..|...+.+|..|++..
T Consensus 113 ~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~~~~~~~~~~~~l~yp~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~-- 190 (295)
T PF13423_consen 113 NSSSSPESSISQLFGTSFETTIRCTSCGHESVKESSTLVLDLPYPPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQ-- 190 (295)
T ss_pred cccCCCcchHHHHhCcceeeeecccccCCeEEeecceeeeeccCCCCCccchHHHHHHHHHhhccccccccccccccc--
Confidence 000111356899999999999999 5999999999998888888752 457999999999999999999999999986
Q ss_pred eEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccccCC------CCCCcceeeC
Q 010812 439 TAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP------SAEVLQFLNV 500 (500)
Q Consensus 439 ~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~~------~~~~~~Y~Li 500 (500)
.+..+..|.++|+||.|.++|+.++.....|+...+.||..+++..++.... .....+|+|.
T Consensus 191 ~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~ 258 (295)
T PF13423_consen 191 PTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELR 258 (295)
T ss_pred ceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEE
Confidence 7788888999999999999999999444789999999999999999886542 3455788873
No 34
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=3.2e-23 Score=205.73 Aligned_cols=190 Identities=15% Similarity=0.073 Sum_probs=151.8
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCc
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPF 278 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~i 278 (500)
+..+||.|.|.|||+||+||+|+++|+||+++... ...+..+.|++++|+.||..+
T Consensus 13 t~~~gl~~~~~~~y~n~~lq~~~~~~~~~~~~~~~--~~~~~~~~~l~~el~~lfs~~---------------------- 68 (268)
T cd02672 13 TNYAGLENHITNSYCNSLLQLLYFIPPFRNFTAII--LVACPKESCLLCELGYLFSTL---------------------- 68 (268)
T ss_pred ccccccccCCccchHHHHHHHHHhcHHHHHHHHhh--cccCCcCccHHHHHHHHHHHH----------------------
Confidence 34699999999999999999999999999984322 233456789999999999110
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcc
Q 010812 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSA 358 (500)
Q Consensus 279 sP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~ 358 (500)
.|-|.++|+++|..+...
T Consensus 69 ----------------------------iq~F~~fll~~i~~~~~~---------------------------------- 86 (268)
T cd02672 69 ----------------------------IQNFTRFLLETISQDQLG---------------------------------- 86 (268)
T ss_pred ----------------------------HHHHHHHHHHHHHHHhcc----------------------------------
Confidence 145888999999965421
Q ss_pred cccccccCCcccccccccEEEeEEEeCCCcccccccCCccceeccccC---cccCHHHHHhhcccceeeeCCccccCCCC
Q 010812 359 VTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSE---AVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (500)
Q Consensus 359 i~~~~s~~~s~I~~lF~G~l~s~i~C~c~~~S~r~e~F~~LsL~Ip~~---~~~sL~d~L~~~~~~E~L~g~~c~~C~~~ 435 (500)
.+ ..|++.+.+.++|++|+|++|.. ...+|++||+.|++.|.+.+++|..|++.
T Consensus 87 --------------~~---------~~C~~~s~~~~~~~~LsLpip~~~~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~ 143 (268)
T cd02672 87 --------------TP---------FSCGTSRNSVSLLYTLSLPLGSTKTSKESTFLQLLKRSLDLEKVTKAWCDTCCKY 143 (268)
T ss_pred --------------cC---------CCCCceeeccccceeeeeecCccccccCCCHHHHHHHHhhhhhcccccccccCcc
Confidence 01 35889999999999999999853 35799999999999999888899988876
Q ss_pred ceeeEEEEEEcccCcc----ceEEEecceeeCC-------CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 436 GVVTAKKSVKIQTLSK----ILILHLMRFSYGS-------QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 436 ~~~~a~k~~~i~~lP~----vLiIhLkRF~~d~-------~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
. .|.|+..|.+||+ ||+||||||.++. ....|++..|.||..+|+..+... .......|+|+
T Consensus 144 ~--~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~-~~~~~~~Y~L~ 216 (268)
T cd02672 144 Q--PLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNR-GQESIYKYELV 216 (268)
T ss_pred c--ccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhcc-CCCCCceEEEE
Confidence 5 9999999999999 9999999999762 124688999999999887665432 23345789884
No 35
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.88 E-value=3.1e-22 Score=198.01 Aligned_cols=224 Identities=23% Similarity=0.269 Sum_probs=178.8
Q ss_pred CCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcC
Q 010812 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFS 279 (500)
Q Consensus 200 ~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~is 279 (500)
+.+||.|+-++-|+|++||+|.+.+++|.|++.... .-.....+...|+.+++.+|.+. .....++
T Consensus 133 G~VGLnNik~~dy~n~vl~~ls~v~PlRnyFl~~~n--~~d~~~~lv~rl~~l~rklw~~r------------~fk~hvS 198 (442)
T KOG2026|consen 133 GFVGLNNIKANDYANAVLQALSHVVPLRNYFLLEEN--YFDNLTELVQRLGELIRKLWNPR------------NFKGHVS 198 (442)
T ss_pred eeeccchhhhHHHHHHHHHHHhccchhhhhhccccc--ccchhHHHHHHHHHHHHHhcChh------------hhcccCC
Confidence 459999999999999999999999999999976421 12234678899999999999876 5678899
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCccc
Q 010812 280 PSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAV 359 (500)
Q Consensus 280 P~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i 359 (500)
|.++.+++.... .+.|..+.|-|+.|||.|||+.||.++.+... +
T Consensus 199 phe~lqaV~~~s----~k~f~i~~q~DpveFlswllntlhs~l~~~k~-~------------------------------ 243 (442)
T KOG2026|consen 199 PHEFLQAVMKLS----KKRFRIGQQSDPVEFLSWLLNTLHSDLRGSKK-A------------------------------ 243 (442)
T ss_pred HHHHHHHHHHHh----hhheecCCCCCHHHHHHHHHHHHHHHhCCCCC-c------------------------------
Confidence 999999988763 44578999999999999999999998865431 1
Q ss_pred ccccccCCcccccccccEEEeEEEeC-----CCcccccccCCccceeccccCc------------ccCHHHHHhhcccce
Q 010812 360 TRTQSFLPSALSDIFGGQLKSVVKAQ-----GNKASATVQPFLLLHLDIYSEA------------VHTIEDALRLFSAPE 422 (500)
Q Consensus 360 ~~~~s~~~s~I~~lF~G~l~s~i~C~-----c~~~S~r~e~F~~LsL~Ip~~~------------~~sL~d~L~~~~~~E 422 (500)
.|+|+..|.|.++..-+-. ........-+|+.|+|++|+.+ .+.|.+.|..|-...
T Consensus 244 -------~SIi~~~fqG~~ri~k~~~~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t 316 (442)
T KOG2026|consen 244 -------SSIIHKSFQGEVRIVKEKQGEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGET 316 (442)
T ss_pred -------hhHhhHhhcceEEeeeeccccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCce
Confidence 2678999999998765542 2345677889999999998642 368999999876543
Q ss_pred eeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeC-ceeeeCCcccc
Q 010812 423 NLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFP-LQLVLGRDLLV 488 (500)
Q Consensus 423 ~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP-~~LDL~~y~~~ 488 (500)
.-+ +.-+ ..| ++..+.++|++||+|++||.-++....|+.+.++|| ..+|+.+.+..
T Consensus 317 ~~e-~~~~-------~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~ 374 (442)
T KOG2026|consen 317 VTE-VVTP-------KLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDR 374 (442)
T ss_pred eee-ecch-------hhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhh
Confidence 332 2211 134 888999999999999999999988889999999999 56777665543
No 36
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.7e-21 Score=208.18 Aligned_cols=276 Identities=24% Similarity=0.314 Sum_probs=200.2
Q ss_pred CCCCCCccccCCCchhHH--HHHHHHhCCHHHHHHHHHhhcCCCC--CCCCcHHHHHHHHHHhcCCCCCCCCcccccccc
Q 010812 197 KDLLPRGLINSGNLCFLN--ATLQALMSCSPFVQLLQELRTRDIP--KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVL 272 (500)
Q Consensus 197 ~~~~~~GL~NlGNTCYmN--SvLQ~L~~~p~fr~~l~~~~~~~~~--~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~ 272 (500)
+.-..-|..|.+++|+.| ++.|.++.+..++............ .....+...+..++...-.. .
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------~ 295 (587)
T KOG1864|consen 228 ANERVFGTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLDLFSSISSR------------K 295 (587)
T ss_pred ccccccCccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhhhccchhhh------------c
Confidence 344557999999999999 9999999999998665443321111 11222333333333322111 1
Q ss_pred CCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCC---CcccccchhhhhhHh
Q 010812 273 DIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSING---ANTALVSLAEEDEWE 349 (500)
Q Consensus 273 ~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~---~~~~~~~~~~~~~w~ 349 (500)
.....+.|..|+..+++....| ..++|||||||+.++++.+++.............. .++... ....-|.
T Consensus 296 ~~~~~i~p~~~~~~~~~~~~~f-----~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~--~~~~~~~ 368 (587)
T KOG1864|consen 296 KLVGRISPTRFISDLIKENELF-----TNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSS--TSAASWT 368 (587)
T ss_pred ccccccCcchhhhhhhhcCCcc-----CchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccc--ccccccc
Confidence 2345689999999999986666 99999999999999999999987654322110000 011111 1111122
Q ss_pred HhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCc
Q 010812 350 TVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYR 428 (500)
Q Consensus 350 ~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~ 428 (500)
..+ ....+-+.+++.+|.|++....+|. |..++.+.+.|.+++++++.....++..+|+.|..+|.+.|++
T Consensus 369 ~~~--------~~~~~~~~~v~~lf~g~l~~et~Clsc~t~T~~de~f~D~~~~v~~de~~si~~~l~~~~~~e~l~g~n 440 (587)
T KOG1864|consen 369 NKG--------HHKSLRENWVSKLFQGILTNETRCLSCETITSRDEGFLDLSVAVEIDENTSITNLLKSFSSTETLSGEN 440 (587)
T ss_pred ccc--------cccccchhHHHHhhcCeeeeeeeeccccccccccccccccceeccccccccHHHHHHHhcchhhccCCC
Confidence 211 1222335789999999999999995 9999999999999999998767899999999999999999999
Q ss_pred cccCC-CCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 429 TSSTG-NAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 429 c~~C~-~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
++.|. |+++|+|.+++.+.++|.+|+||||||.|+. ....|+...|.||.+|.+...+..+ ..+...|+|+
T Consensus 441 ky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~-~~~~~~Y~L~ 514 (587)
T KOG1864|consen 441 KYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD-NNPDRKYDLV 514 (587)
T ss_pred cccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc-cCccceeeEE
Confidence 99885 4558999999999999999999999999993 3458999999999999997654322 2234789885
No 37
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.74 E-value=3.2e-18 Score=166.62 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=87.0
Q ss_pred CCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEE
Q 010812 304 QEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVK 383 (500)
Q Consensus 304 QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~ 383 (500)
|||+.||+.+|+++|+.-+.. +.-++|.|-....-
T Consensus 23 q~D~~e~~~~l~~~~~~~~~~--------------------------------------------~~~~~~~~g~~~~~- 57 (241)
T cd02670 23 QQDPEEFFNFITDKLLMPLLE--------------------------------------------PKVDIIHGGKKDQD- 57 (241)
T ss_pred hcCHHHHHHHHHHHHhhhhhh--------------------------------------------HHHHHHhcCccccc-
Confidence 999999999999999874431 12355554211110
Q ss_pred eCCCcccccccCCccceecccc-CcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceee
Q 010812 384 AQGNKASATVQPFLLLHLDIYS-EAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSY 462 (500)
Q Consensus 384 C~c~~~S~r~e~F~~LsL~Ip~-~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~ 462 (500)
.. +...|.|+.|.++.+. .+..+|++||+.|++.|. |.++|+||+||||||.|
T Consensus 58 ---~~-~~~~e~~l~l~ip~~~~~~~~tLedcLe~~~~~e~----------------------i~~lP~vLiIhLKRF~~ 111 (241)
T cd02670 58 ---DD-KLVNERLLQIPVPDDDDGGGITLEQCLEQYFNNSV----------------------FAKAPSCLIICLKRYGK 111 (241)
T ss_pred ---cc-cccccceEEeecccCCCCCcCCHHHHHHHHhchhh----------------------hhhCCCeEEEEEEcccc
Confidence 01 3445666666665543 256899999999999886 88999999999999999
Q ss_pred CCCCeeeccceeeeCceeeeCCcccc
Q 010812 463 GSQGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 463 d~~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
+.+...|++++|.||..|||.+|+..
T Consensus 112 ~~~~~~Kl~~~I~fP~~Ldl~~~~~~ 137 (241)
T cd02670 112 TEGKAQKMFKKILIPDEIDIPDFVAD 137 (241)
T ss_pred CCCcceeCCcEECCCCcCCchhhccc
Confidence 97667899999999999999999865
No 38
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.5e-17 Score=168.09 Aligned_cols=235 Identities=19% Similarity=0.179 Sum_probs=168.4
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCC-CC---CCCCcHHHHHHHHHHhcCCCCCCCCccccccccC
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRD-IP---KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 273 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~-~~---~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 273 (500)
..+|+||.|+|||||||+.+|||-..|+++..+....... .. ....-+..+++.+|+.|..
T Consensus 102 ~~lp~gl~nlgNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~--------------- 166 (473)
T KOG1872|consen 102 LPLPVGLPNLGNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCE--------------- 166 (473)
T ss_pred ccCCccccchhHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhc---------------
Confidence 4577999999999999999999999999998876544111 00 1123466788888888863
Q ss_pred CCCCcChHHHHHHHHhhCCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhC
Q 010812 274 IGRPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (500)
Q Consensus 274 ~~~~isP~~f~~~l~~~~p~f~~~-~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (500)
. .++.|..+.+.+.+..|+|... ....+.||||.|+...++-.++..+......+
T Consensus 167 ~-~~v~pi~llqtl~~~~Pqfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~~~~----------------------- 222 (473)
T KOG1872|consen 167 K-GAVAPINLLQTLSSQYPQFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVATEAP----------------------- 222 (473)
T ss_pred c-CCcchHHHHHHHHHHhHHHHHHhhhhhHHHHHHhHhHHHhhhheecccccccccc-----------------------
Confidence 2 7899999999999999988331 23558999999999999999998654322111
Q ss_pred CCCCcccccccccCCcccccccccEEEeEEEeC-CCccccc--ccCCccceeccccCcccCHHHHHhhcccceeeeCCcc
Q 010812 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASAT--VQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT 429 (500)
Q Consensus 353 ~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r--~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c 429 (500)
. ....+..+|+.++..+..|. ....... .|.|..|..-|- .....+...|+.=+. |.++ .+.
T Consensus 223 -~-----------~~~~~d~~f~~~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~-~~~~~~k~Gl~~~~~-e~~~-K~s 287 (473)
T KOG1872|consen 223 -C-----------LEAEAAAGFGAEFSTTMSCSEGEDEGGGAGRELVDQLKCIIN-KTVHDMRFGLKSGLS-EEIQ-KIS 287 (473)
T ss_pred -c-----------hhHHHHHhhccccccceeeccCcccccccccccccccceEEe-eeechhhhhhhhhhh-hhhh-ccC
Confidence 0 01346788999999999995 4333322 788888777773 234556666654333 2333 222
Q ss_pred ccCCCCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCcccc
Q 010812 430 SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 430 ~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
+-.|... ...|...|.+||.+|+||.-||.|.. +...|+-+.|.||..||....|..
T Consensus 288 ~~lgr~a--~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~ 346 (473)
T KOG1872|consen 288 SILGRPA--AYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTP 346 (473)
T ss_pred cccCCCh--HHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCH
Confidence 3344444 45678899999999999999999983 444699999999999999887753
No 39
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.4e-12 Score=130.57 Aligned_cols=377 Identities=21% Similarity=0.132 Sum_probs=239.7
Q ss_pred CCCceEEEEeccchhhhhhhhcccCCCCCCCCCCccccCCccccccceeccceeeeeecccCCCCCCCCCccCCCCeeec
Q 010812 1 MSDSKLFVFGSFTEEETRSWLQSQSSGSVKKPVSSRRAEKPAEDKELQFGSLNFGTESSLVGTTDEPNGKSVVDGPVVFQ 80 (500)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
|+.+++++||+|+|.|||+++.+.+ -. .|.-+-+--.-+++|+|+...+.+......++.+ .++|.++ +
T Consensus 1 ~~~~~~~~~~~~~e~~t~s~~~p~~-i~-------Prg~ink~n~c~~ns~Lqal~~c~pfy~l~~~i~--~~~~~~~-~ 69 (420)
T KOG1871|consen 1 MSEKKVFVIGSFLENETRSFFEPVP-ID-------PRGSINKCNICFMNSILQALLYCSPFYNLLELIK--RADGTVK-E 69 (420)
T ss_pred CCccchhhhhHhhhcccccccCccc-cC-------CccccccceeEeeHHHHHHHHhCccHHHHHHhhh--hhcCcee-c
Confidence 7889999999999999999997766 22 1222333447789999999999888777766633 6666665 5
Q ss_pred C----CcccCCccccc---c-cCCCCCCCCCCCcccccCCcccccCCC-CccccCccccccCCccccccccCCCCCCCCC
Q 010812 81 P----STLLKKDDKVK---S-VGASNDHDLGAVGCPKENGHIKNSTNG-PALSNGVNHLKADGIDFSSFHQNAGGHANPS 151 (500)
Q Consensus 81 ~----~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (500)
. .+..++..... + .+.++.+.+.+|++.. ..+.+ .+..+|+ .++++..-++.+.++..+..
T Consensus 70 ~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~~~~~------~~ses~~~d~~~d-av~~d~~~~~l~t~~~~e~~--- 139 (420)
T KOG1871|consen 70 GSTPLLDASRPASSDFNNDSDAKLPRKNSLRVPEHVV------EKSESNKSDLQGD-AVKPDPIYLDLLTMSRFESL--- 139 (420)
T ss_pred ccchhHHHHHHHHhhccccchhhhhhhccCCcccccc------chhhhhhhcccCc-cccCCchhhhcccCCchhhc---
Confidence 3 23444444444 3 3448999999998665 22332 3456777 88999988888888777522
Q ss_pred CCCccccccCCCCCcccccccccCCCCCCCCccCcccCCCCccccCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHH
Q 010812 152 PISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQ 231 (500)
Q Consensus 152 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~ 231 (500)
-..+..+.|+|-. ...+ ....+....+.....+.+...|+|+.|.||-|++++..|.+.+...+...+.
T Consensus 140 --~~g~qedAeefl~-----~~ld----~lhee~~~v~~~~~~~n~e~t~~~~i~~~n~~n~~s~~e~~~~~~~~~~~~g 208 (420)
T KOG1871|consen 140 --QVGKQEDAEEFLL-----DNLD----FLHEESSEVPTELVPPNDEFTPRGLINNGNLCNLDSTEEAGLSESSGVQLLG 208 (420)
T ss_pred --cccccccHHHHHH-----HHHh----hhhHHHHhhhhhhcCCcccccccccccccccccccchhhcccccCchhhhcC
Confidence 1122233333321 0011 1122333566667777888899999999999999999999999999999887
Q ss_pred HhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHHH----------HHHHHhhCCCCCCC----
Q 010812 232 ELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMF----------EAVLKNFTPDVPNS---- 297 (500)
Q Consensus 232 ~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~f----------~~~l~~~~p~f~~~---- 297 (500)
.......+.........+.++|.....+.-.....++. ....++.|..| ..++..+.+.-...
T Consensus 209 k~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~~nkeS---~tlqPF~tlqldiq~~~i~sv~~ales~~~re~lp~~st 285 (420)
T KOG1871|consen 209 KIQKTDIPRADSFVRSPISEIFGGQLRSVLYQPSNKES---ATLQPFFTLQLDIQSEKIHSVQDALESLVARESLPGYST 285 (420)
T ss_pred CcccCccCCCCCcccCcHHHhhccccccceeccccccc---cccCccceeeeeeeccccCCHHHHhhccChhhcccceec
Confidence 76655555555556666677776543221111111111 11222222222 22333322211011
Q ss_pred ----CCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccc
Q 010812 298 ----ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDI 373 (500)
Q Consensus 298 ----~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~l 373 (500)
......|-++++|...|+.+|+...-....... ...+.|+.....+.+..... ..+++-+ .+
T Consensus 286 ~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~------------k~~K~i~~~~~l~i~~~~~s-~gvk~~~-~~ 351 (420)
T KOG1871|consen 286 KSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGAR------------KLGKKIEYPWTLKISKNCFS-QGLKIRI-LI 351 (420)
T ss_pred CCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchh------------hhchhhhccceeeechhhhc-cccchhh-hc
Confidence 123357899999999999999998765322111 12234555555554444433 3333344 77
Q ss_pred cccEEEeEEEeCCCcccccccCCccceeccccCcccCHHHHHhhcccceeeeC
Q 010812 374 FGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG 426 (500)
Q Consensus 374 F~G~l~s~i~C~c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g 426 (500)
|++.+.+...-.....+.+..++....+.+...+-..|+|++-.+.+.+.+.+
T Consensus 352 ~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~ 404 (420)
T KOG1871|consen 352 ATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEK 404 (420)
T ss_pred cccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhcc
Confidence 88888888777776778899999988888877778899999988888888775
No 40
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.09 E-value=2.2e-10 Score=124.50 Aligned_cols=271 Identities=11% Similarity=0.084 Sum_probs=167.9
Q ss_pred CCCCCCCCccccccCCCCCcccccccccCCCCCCCCccCcccCCCCccccCCCCCCccccCCCchhHHHHHHHHhCCHHH
Q 010812 147 HANPSPISKFHVLCDGNIDGRDQNAAACNSSISGSKEVPMKAINEPVKSVKDLLPRGLINSGNLCFLNATLQALMSCSPF 226 (500)
Q Consensus 147 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~f 226 (500)
+.+++.-.++..-..++|+ |.+++.++ ++||.-.+-.-|.|++||.|+++|++
T Consensus 472 k~Y~k~~lkysk~G~edFD-F~~~NqT~--------------------------yaGLe~~i~N~YcNamiQllyfl~~~ 524 (1118)
T KOG1275|consen 472 KLYRKVPLKYSKFGTEDFD-FQDYNQTT--------------------------YAGLETDIPNSYCNAMIQLLYFLPPI 524 (1118)
T ss_pred hhhcccceeecccccccCC-Ccccccce--------------------------eeccCCCCchHHHHHHHHHHHhccHH
Confidence 5577777777777777776 44555444 48999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCC--CC
Q 010812 227 VQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRP--RQ 304 (500)
Q Consensus 227 r~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~--~Q 304 (500)
|.++... .+..+.|++|+|..||.+|... .+.++....|.++++..... .--|. .+
T Consensus 525 r~~vl~H----~C~~e~CL~CELGFLF~Ml~~S--------------~G~~Cqa~NFlraf~t~~~a----~~LG~vl~d 582 (1118)
T KOG1275|consen 525 RSIVLRH----ICTKEFCLLCELGFLFTMLDSS--------------TGDPCQANNFLRAFRTNPEA----SALGLVLSD 582 (1118)
T ss_pred HHHHHcC----ccchhHHHHHHHHHHHHHHhhh--------------cCCccchhHHHHHHhhChHh----hhhcccccc
Confidence 9999874 5667789999999999999864 36688999999999875321 11122 22
Q ss_pred CchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhh-hhHhHhCCCCCcccccccccC---CcccccccccEEEe
Q 010812 305 EDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEE-DEWETVGPKNKSAVTRTQSFL---PSALSDIFGGQLKS 380 (500)
Q Consensus 305 qDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~-~~w~~~~~~n~s~i~~~~s~~---~s~I~~lF~G~l~s 380 (500)
.++.+-+ .++.|.+...+..-... .+.... .+ ....+-. .+. ..++. ...+.+.|+-.++.
T Consensus 583 ~~~~~~~--~~~~liq~~~~~~~set---~~~~d~----~~~~~~~~s~-----~~~-~~~~~vn~~~~l~q~F~~~~e~ 647 (1118)
T KOG1275|consen 583 TQISGTV--NDDVLIQDAEGFISSET---SRHLDC----QDCRGLQQSE-----SVD-GESFKVNYAPVLQQSFCQEIEK 647 (1118)
T ss_pred hhhcccc--chHHHhhhhhhccchhh---hhhhhH----HHhhhhhhhh-----ccc-CceeeecchhHHHHHhhhHHHH
Confidence 2222211 01111111110000000 000000 00 0000000 000 00111 24688999999999
Q ss_pred EEEe-CCCcccccccCCccceeccccCc-------ccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccc
Q 010812 381 VVKA-QGNKASATVQPFLLLHLDIYSEA-------VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKI 452 (500)
Q Consensus 381 ~i~C-~c~~~S~r~e~F~~LsL~Ip~~~-------~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~v 452 (500)
...| .|+....+.-....+.|..|+.. .....+.|++-...+.-...+|+.|++.. ....+..+..||.+
T Consensus 648 ~~~Cg~C~~~~~~~k~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~e--p~~q~~~vr~LPd~ 725 (1118)
T KOG1275|consen 648 SLRCGECGDEKQKSKSLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPE--PTSQKKNVRSLPDC 725 (1118)
T ss_pred hhhcccccchhhhhhhhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCC--CcccccccccCcce
Confidence 9999 79888777777777777776421 12344555433222222227899999887 77788899999999
Q ss_pred eEEEecceeeC--CCC--eeeccceeeeCceeeeC
Q 010812 453 LILHLMRFSYG--SQG--STKLHKSVRFPLQLVLG 483 (500)
Q Consensus 453 LiIhLkRF~~d--~~~--~~Ki~~~V~FP~~LDL~ 483 (500)
|.|...-+... ... ..|.-..|-+|+.+-|.
T Consensus 726 L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~ 760 (1118)
T KOG1275|consen 726 LSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMI 760 (1118)
T ss_pred eeeeeeccchhhhhhHHHhhccccccccchheeEE
Confidence 99988877755 222 23566778888876654
No 41
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0014 Score=71.80 Aligned_cols=31 Identities=55% Similarity=1.018 Sum_probs=28.6
Q ss_pred cccCCCchhHHHHHHHHhCCHHHHHHHHHhh
Q 010812 204 LINSGNLCFLNATLQALMSCSPFVQLLQELR 234 (500)
Q Consensus 204 L~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~ 234 (500)
|.|.||+||.||+||+|+++|+|+.-+..++
T Consensus 34 l~n~gn~cy~ns~~Q~~~~~~~~~~r~~~l~ 64 (587)
T KOG1864|consen 34 LVNTGNSCYYNSTLQALSSCPPFVSRVEQLP 64 (587)
T ss_pred EeecCCchhhhhHHHHHhhccHHHHHHHHHH
Confidence 9999999999999999999999998776654
No 42
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=93.88 E-value=0.15 Score=49.70 Aligned_cols=29 Identities=34% Similarity=0.569 Sum_probs=26.3
Q ss_pred ccCCCchhHHHHHHHHhCCHHHHHHHHHh
Q 010812 205 INSGNLCFLNATLQALMSCSPFVQLLQEL 233 (500)
Q Consensus 205 ~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~ 233 (500)
+|.-|.|++-++|-+|.|+..++..+-+.
T Consensus 6 ~N~~aLCWLDciLsaLVh~~~Lk~~~~~~ 34 (275)
T PF15499_consen 6 KNSNALCWLDCILSALVHLESLKNAVTEL 34 (275)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68889999999999999999999998663
No 43
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=89.06 E-value=0.24 Score=45.81 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=14.2
Q ss_pred CCccccCCCchhHHHHHHHH
Q 010812 201 PRGLINSGNLCFLNATLQAL 220 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L 220 (500)
.+|+-|.+|+|++||++|.+
T Consensus 33 ft~~PN~~dnCWlNaL~QL~ 52 (193)
T PF05408_consen 33 FTGLPNNHDNCWLNALLQLF 52 (193)
T ss_dssp EE----SSSTHHHHHHHHHH
T ss_pred EecCCCCCCChHHHHHHHHH
Confidence 36999999999999999965
No 44
>PF12478 DUF3697: Ubiquitin-associated protein 2 ; InterPro: IPR022166 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00627 from PFAM. There are two conserved sequence motifs: AVEMPG and QFG.
Probab=83.30 E-value=0.42 Score=31.20 Aligned_cols=16 Identities=44% Similarity=0.929 Sum_probs=12.7
Q ss_pred cccccceeccceeeee
Q 010812 42 AEDKELQFGSLNFGTE 57 (500)
Q Consensus 42 ~~~~~~~~~~~~~~~~ 57 (500)
..--.+|||.|+||++
T Consensus 18 i~~LdvQFGal~fGse 33 (33)
T PF12478_consen 18 ISSLDVQFGALDFGSE 33 (33)
T ss_pred cCceeEEeccccccCC
Confidence 3346799999999975
No 45
>KOG3556 consensus Familial cylindromatosis protein [General function prediction only]
Probab=73.14 E-value=7.1 Score=41.82 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=23.1
Q ss_pred EEcccCccceEEEecceeeCCCCeeeccceeeeC
Q 010812 444 VKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFP 477 (500)
Q Consensus 444 ~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP 477 (500)
+++...|..+|||+-||.-+.....||-..+..|
T Consensus 516 ik~~e~pSc~iiqmprfgk~~km~~~i~pS~~l~ 549 (724)
T KOG3556|consen 516 IKSTETPSCQIIQMPRFGKSQKMPAAIGPSISLP 549 (724)
T ss_pred cccccCcchhheeccccCcccccchhcCCceEee
Confidence 3667899999999999987633334444444443
No 46
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=58.36 E-value=8.8 Score=39.24 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=19.2
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHH
Q 010812 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHD 320 (500)
Q Consensus 279 sP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~e 320 (500)
.|..|...+-.... ...|+-.||+++|..||..++.
T Consensus 144 ~~~~fVa~~Ya~~~------~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 144 DPAPFVAWCYASTN------AKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp --HHHHHHHHHHTT--------TTS---HHHHHHHHHTTB-T
T ss_pred ChHHHHHHHHHHcC------CCCCCCcCHHHHHHHHHHhccc
Confidence 35555554444322 1568999999999999977664
No 47
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=35.12 E-value=34 Score=26.27 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=25.3
Q ss_pred CccccCCCCceeeEEEEEEc--ccCccceEEEecceeeC
Q 010812 427 YRTSSTGNAGVVTAKKSVKI--QTLSKILILHLMRFSYG 463 (500)
Q Consensus 427 ~~c~~C~~~~~~~a~k~~~i--~~lP~vLiIhLkRF~~d 463 (500)
..|++|++... ..+++.. ..|.+++=||.++|..-
T Consensus 5 ~kCpKCgn~~~--~ekei~~tg~~lskifdvq~n~f~~i 41 (68)
T COG3478 5 FKCPKCGNTNY--EEKEIAATGGGLSKIFDVQNNKFIVI 41 (68)
T ss_pred ccCCCcCCcch--hhceeeccCCCcceeEEecccEEEEE
Confidence 34999998763 3344333 47889999999999855
No 48
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=30.83 E-value=44 Score=25.72 Aligned_cols=37 Identities=22% Similarity=0.251 Sum_probs=24.5
Q ss_pred CccccCCCCceeeEEEEEEcccCccceEEEecceeeC
Q 010812 427 YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG 463 (500)
Q Consensus 427 ~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d 463 (500)
|.|++|+.........+..=..+-.++=||.+||..-
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~v 37 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTTV 37 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEEE
Confidence 5789998865333333333345667888999999854
No 49
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=23.06 E-value=15 Score=39.88 Aligned_cols=31 Identities=19% Similarity=0.166 Sum_probs=26.6
Q ss_pred CCCccccCCCchhHHHHHHHHhCCHHHHHHH
Q 010812 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLL 230 (500)
Q Consensus 200 ~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l 230 (500)
...|+.+.+|||+||+.+|.++.++.|.-+.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~~~~~c~~~i~~~ 106 (492)
T KOG1867|consen 76 EHSGNKKHNNTIDVNNGLLYCFACPDFIYDA 106 (492)
T ss_pred cccccccccccceeehhhheeccCCcEeecc
Confidence 3479999999999999999999999876543
No 50
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.54 E-value=1.2e+02 Score=26.63 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=42.7
Q ss_pred eEEEeCCCcccccccCCccceeccccCcccCHHHHHhhcccceeee--------CCccccCCCCceeeEEEEEEcccCcc
Q 010812 380 SVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLE--------GYRTSSTGNAGVVTAKKSVKIQTLSK 451 (500)
Q Consensus 380 s~i~C~c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~--------g~~c~~C~~~~~~~a~k~~~i~~lP~ 451 (500)
..++|.|++.-...+.-+-|..+|- ..+-++.|+...-.-.+. .+.|+.||--.-++ .-.|-
T Consensus 69 rv~rcecghsf~d~r~nwkl~a~i~---vrdtee~lreiyp~s~ipdp~wme~reficpecg~l~eve-------aaap~ 138 (165)
T COG4647 69 RVIRCECGHSFGDYRENWKLHANIY---VRDTEEKLREIYPKSDIPDPQWMEIREFICPECGILHEVE-------AAAPG 138 (165)
T ss_pred cEEEEeccccccChhhCceeeeEEE---EcchHHHHHHhCcccCCCCchHHHHHHhhCccccceeeec-------cCCCC
Confidence 4789999998888888888888874 445566665433222222 36688887643222 24677
Q ss_pred ceEEE
Q 010812 452 ILILH 456 (500)
Q Consensus 452 vLiIh 456 (500)
|-|||
T Consensus 139 ypivh 143 (165)
T COG4647 139 YPIVH 143 (165)
T ss_pred Cceec
Confidence 77776
Done!