Query 010812
Match_columns 500
No_of_seqs 261 out of 1491
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 14:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 2.7E-49 9.2E-54 408.7 19.6 270 198-500 5-303 (367)
2 2gfo_A Ubiquitin carboxyl-term 100.0 2.7E-48 9.2E-53 405.7 17.6 272 198-500 59-340 (396)
3 3nhe_A Ubiquitin carboxyl-term 100.0 1.6E-46 5.6E-51 383.5 19.9 274 196-500 4-287 (348)
4 3i3t_A Ubiquitin carboxyl-term 100.0 1.7E-46 5.8E-51 384.4 19.3 269 199-500 1-297 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 2.5E-46 8.6E-51 385.0 19.1 240 197-500 2-244 (353)
6 2f1z_A Ubiquitin carboxyl-term 100.0 3.7E-46 1.3E-50 402.8 17.6 289 148-500 112-413 (522)
7 2ayn_A Ubiquitin carboxyl-term 100.0 1.8E-44 6E-49 376.9 12.6 251 198-488 11-271 (404)
8 1vjv_A Ubiquitin carboxyl-term 100.0 9.4E-43 3.2E-47 365.6 17.4 229 197-488 20-263 (415)
9 3mhs_A Ubiquitin carboxyl-term 100.0 1.8E-42 6E-47 369.9 18.5 263 198-500 138-419 (476)
10 3ihp_A Ubiquitin carboxyl-term 100.0 2.6E-42 8.9E-47 389.9 17.7 245 195-488 338-624 (854)
11 2vhf_A Ubiquitin carboxyl-term 99.9 1.8E-23 6E-28 210.7 1.4 190 200-490 8-203 (374)
12 1qmy_A Protease, leader protea 70.8 2 6.9E-05 36.9 2.3 20 201-220 13-32 (167)
13 3mp2_A Non-structural protein 66.4 5.4 0.00018 36.9 4.4 31 279-315 50-80 (211)
14 2fe8_A PP1AB, ORF1AB, replicas 50.1 24 0.00081 34.7 6.0 31 279-315 144-174 (315)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.7e-49 Score=408.74 Aligned_cols=270 Identities=26% Similarity=0.400 Sum_probs=219.8
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC------CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR------DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~------~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~ 271 (500)
..+++||.|+||||||||+||||+++|+||+++...... +......+++.+|+.|+..||...
T Consensus 5 ~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~----------- 73 (367)
T 2y6e_A 5 QPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGR----------- 73 (367)
T ss_dssp CTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSS-----------
T ss_pred CCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCC-----------
Confidence 346799999999999999999999999999999864321 112234579999999999999643
Q ss_pred cCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCc-cCCCcccccchhhhhhHhH
Q 010812 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWET 350 (500)
Q Consensus 272 ~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~ 350 (500)
...++|..|+.+++...+.| .+++||||||||++|||.||+++.+....+.. .....+......+.+.|..
T Consensus 74 ---~~~i~P~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~ 145 (367)
T 2y6e_A 74 ---DAHVAPRMFKTQVGRFAPQF-----SGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWEN 145 (367)
T ss_dssp ---CSEECCHHHHHHHHHHCGGG-----CSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHH
T ss_pred ---CCCcCHHHHHHHHHHhhhhc-----CCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHH
Confidence 56899999999999988776 89999999999999999999998765443321 1223333444556778987
Q ss_pred hCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccC-----------------cccCHH
Q 010812 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE-----------------AVHTIE 412 (500)
Q Consensus 351 ~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~-----------------~~~sL~ 412 (500)
+..++. ++|.++|+|++.++++|. |++.+.+.|+|++|+|+||.. +..+|+
T Consensus 146 ~~~~~~-----------s~i~~~F~G~l~s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~~~~~~~~~~~~~sL~ 214 (367)
T 2y6e_A 146 HRLRND-----------SVIVDTFHGLFKSTLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGPMLQPQKKKKTTVALR 214 (367)
T ss_dssp HHHHCC-----------SHHHHHHCEEEEEEEECTTTCCEEEEEEEESSEEEECCC-------------------CEEHH
T ss_pred HHHhcC-----------CccccccCcEEeeeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceeeeeccccccCCCCCHH
Confidence 765554 457899999999999996 999999999999999999853 246999
Q ss_pred HHHhhcccceeeeCC---ccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCc-eeeeCCcccc
Q 010812 413 DALRLFSAPENLEGY---RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLV 488 (500)
Q Consensus 413 d~L~~~~~~E~L~g~---~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~ 488 (500)
+||+.|+.+|.|++. .|+.|++ ++.|.|+..|.+||+||+|||+||.|+.....|++++|.||. .|||.+|+..
T Consensus 215 ~~L~~f~~~E~l~~~~~~~C~~C~~--~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~ 292 (367)
T 2y6e_A 215 DCIELFTTMETLGEHDPWYCPNCKK--HQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCN 292 (367)
T ss_dssp HHHHHHTSCEECCC-CCEEETTTTE--EECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSC
T ss_pred HHHHHhcccccCCCCCCccCCCCCC--CceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccC
Confidence 999999999999974 4555544 458999999999999999999999999777899999999997 6999999864
Q ss_pred CCCCCCcceeeC
Q 010812 489 TPSAEVLQFLNV 500 (500)
Q Consensus 489 ~~~~~~~~Y~Li 500 (500)
. ......|+|+
T Consensus 293 ~-~~~~~~Y~L~ 303 (367)
T 2y6e_A 293 L-SARPYVYDLI 303 (367)
T ss_dssp S-SSCCCEEEEE
T ss_pred C-CCCCceEEEE
Confidence 3 3456789984
No 2
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=100.00 E-value=2.7e-48 Score=405.74 Aligned_cols=272 Identities=27% Similarity=0.378 Sum_probs=217.6
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhc------CCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT------RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~------~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~ 271 (500)
..+++||.|+||||||||+||||+++|+||+++..... .+......+++.+|+.|+..||...
T Consensus 59 ~~g~~GL~NlGNTCYmNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~----------- 127 (396)
T 2gfo_A 59 GPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ----------- 127 (396)
T ss_dssp STTCCEECCSSSCHHHHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC-----------
T ss_pred CCCcccccccCCchhHhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC-----------
Confidence 45679999999999999999999999999999976321 1122234678999999999998542
Q ss_pred cCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCc-cCCCcccccchhhhhhHhH
Q 010812 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTS-INGANTALVSLAEEDEWET 350 (500)
Q Consensus 272 ~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~-~~~~~~~~~~~~~~~~w~~ 350 (500)
...++|..|+.+++...+.| .+++||||||||++|||.||+++.+....... ............+...|..
T Consensus 128 ---~~~i~P~~f~~~l~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~a~~~w~~ 199 (396)
T 2gfo_A 128 ---YRYISPKDFKITIGKINDQF-----AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQK 199 (396)
T ss_dssp ---EEEECCHHHHHHHHHHCGGG-----SSSSCCCHHHHHHHHHHHHHHHHCCCCC---------TTSCHHHHHHHHHHH
T ss_pred ---CceECHHHHHHHHHHhchhh-----cCCCCCChHHHHHHHHHHHHHHHhhhccccccccccccccchhhHHHHHHHH
Confidence 45799999999999987776 89999999999999999999998754332211 1111122223445667887
Q ss_pred hCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCcc
Q 010812 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT 429 (500)
Q Consensus 351 ~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c 429 (500)
+...+. ++|.++|+|++.+.++|. |++.+.+.|+|++|+|+||..+..+|++||+.|+++|.|+|.+.
T Consensus 200 ~~~~~~-----------s~I~~lF~G~l~s~i~C~~C~~~s~~~e~f~~LsL~ip~~~~~sL~~~L~~f~~~E~l~~~n~ 268 (396)
T 2gfo_A 200 HKQLNE-----------SIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNNR 268 (396)
T ss_dssp HHHHCC-----------SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCSCSSEEEHHHHHHHHTSCEEECSTTC
T ss_pred hhhccC-----------CccchhhCcEEEEEEEeCCCCceecccccceeeeecccccccCCHHHHHHHhCCcccccCCcc
Confidence 654443 567899999999999996 99999999999999999997777899999999999999998555
Q ss_pred ccCCCCc-eeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCc-eeeeCCccccCCCCCCcceeeC
Q 010812 430 SSTGNAG-VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 430 ~~C~~~~-~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
+.|.+|+ .+.|.|+..|.+||+||+|||+||.|+.....|+++.|.||. .|||.+|+.. +......|+|+
T Consensus 269 ~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~-~~~~~~~Y~L~ 340 (396)
T 2gfo_A 269 FYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG-PKNNLKKYNLF 340 (396)
T ss_dssp EEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCS-CCSSCCCBEEE
T ss_pred cccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccC-CCCCCceEEEE
Confidence 5444333 458999999999999999999999999766789999999996 6999999864 34456789984
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=1.6e-46 Score=383.50 Aligned_cols=274 Identities=27% Similarity=0.357 Sum_probs=218.4
Q ss_pred cCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC-CC---CCCCCcHHHHHHHHHHhcCCCCCCCCccccccc
Q 010812 196 VKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR-DI---PKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISV 271 (500)
Q Consensus 196 ~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~-~~---~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~ 271 (500)
....+++||.|+||||||||+||+|+++|+||+++...... .. .....+++++|+.|+..||..
T Consensus 4 k~~~g~~GL~N~GNtCY~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~------------ 71 (348)
T 3nhe_A 4 KSAQGLAGLRNLGNTCFMNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTS------------ 71 (348)
T ss_dssp --CCSCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHTTC------------
T ss_pred CCCCCCCCCCcCCccHHHHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHHcC------------
Confidence 34567899999999999999999999999999999764321 11 224567899999999999953
Q ss_pred cCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccC-CCcccccchhhhhhHhH
Q 010812 272 LDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN-GANTALVSLAEEDEWET 350 (500)
Q Consensus 272 ~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~ 350 (500)
.....++|..|+.+++...+.| .+++||||||||.+|||.||+++.+......... ..........+...|..
T Consensus 72 -~~~~~~~p~~~~~~l~~~~~~f-----~~~~QqDa~Efl~~lLd~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (348)
T 3nhe_A 72 -SPNDVVSPSEFKTQIQRYAPRF-----VGYNQQDAQEFLRFLLDGLHNEVNRVTLRPKSNPENLDHLPDDEKGRQMWRK 145 (348)
T ss_dssp -CTTCEECCHHHHHHHHHHSGGG-----SSSCCBCHHHHHHHHHHHHHHHHCSCSSCCCCCCCCCTTSCHHHHHHHHHHH
T ss_pred -CCCCccCHHHHHHHHHHhhhhh-----CCCCccCHHHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 2367899999999999998776 8899999999999999999999976543332111 11112223345567777
Q ss_pred hCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc--ccCHHHHHhhcccceeeeCC
Q 010812 351 VGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA--VHTIEDALRLFSAPENLEGY 427 (500)
Q Consensus 351 ~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~--~~sL~d~L~~~~~~E~L~g~ 427 (500)
+...+. ++|.++|+|++.+.++|. |++.+.+.|+|++|+|+||... ..+|++||+.|+.+|.++|.
T Consensus 146 ~~~~~~-----------s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~LsL~i~~~~~~~~sl~~~L~~~~~~e~l~~~ 214 (348)
T 3nhe_A 146 YLERED-----------SRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKRGYPEVTLMDCMRLFTKEDVLDGD 214 (348)
T ss_dssp HHTTCC-----------CHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCSSCSSCEEHHHHHHHHHSCEEECGG
T ss_pred HHhhcC-----------CccccccceEEEEEEEcCCCCCEeeeeccceEEeeeCCCcccCCCCHHHHHHHhcCceEecCC
Confidence 665554 457899999999999996 9999999999999999998533 35999999999999999985
Q ss_pred ccccCCCCc-eeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCc-eeeeCCccccCCCCCCcceeeC
Q 010812 428 RTSSTGNAG-VVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 428 ~c~~C~~~~-~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
+++.|..|+ .+.|.|+..|.++|+||+|||+||.++.....|+++.|.||. .|||.+|+.. ......|+|+
T Consensus 215 ~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~~--~~~~~~Y~L~ 287 (348)
T 3nhe_A 215 EKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFASE--NTNHAVYNLY 287 (348)
T ss_dssp GCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBCT--TCCCCEEEEE
T ss_pred CceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcCC--CCCCCcEEEE
Confidence 544443322 459999999999999999999999999877899999999995 7999999853 3455789984
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=100.00 E-value=1.7e-46 Score=384.38 Aligned_cols=269 Identities=29% Similarity=0.363 Sum_probs=207.6
Q ss_pred CCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC---CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCC
Q 010812 199 LLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIG 275 (500)
Q Consensus 199 ~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~ 275 (500)
+|.+||.|+||||||||+||+|+++|+||+++...... .......+++.+|+.|+..||... ..
T Consensus 1 TG~~GL~N~GNtCY~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~-------------~~ 67 (355)
T 3i3t_A 1 SGHVGLRNLGNTCFLNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD-------------SC 67 (355)
T ss_dssp --CCCBCCCSSTHHHHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS-------------SC
T ss_pred CCCcCcEECCcchHHHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCC-------------CC
Confidence 36799999999999999999999999999999764311 112234579999999999999753 24
Q ss_pred CCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccC----------------CCcccc
Q 010812 276 RPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSIN----------------GANTAL 339 (500)
Q Consensus 276 ~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~----------------~~~~~~ 339 (500)
..++|..|+.+++...+.| .+++||||||||.+|||.||+++........... ......
T Consensus 68 ~~v~p~~~~~~l~~~~~~f-----~~~~QqDA~Efl~~LLd~L~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (355)
T 3i3t_A 68 EAVNPTRFRAVFQKYVPSF-----SGYSQQDAQEFLKLLMERLHLEINRRGRRAPPILANGPVPSPPRRGGALLEEPELS 142 (355)
T ss_dssp CCBCCHHHHHHHHHHCGGG-----CSSCCCBHHHHHHHHHHHHHHHHCCC----------------------------CC
T ss_pred CcccHHHHHHHHHHhChhh-----CCCCccCHHHHHHHHHHHHHHHHhhhccCCCcccccCcccCccccccccccCCCCC
Confidence 6799999999999988776 8999999999999999999999975433221100 000011
Q ss_pred cchhhhhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccC----cccCHHHH
Q 010812 340 VSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSE----AVHTIEDA 414 (500)
Q Consensus 340 ~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~----~~~sL~d~ 414 (500)
....+...|..+..++. ++|.++|+|++.+.++|. |++.+.+.|+|++|+|+||.. +..+|++|
T Consensus 143 ~~~~~~~~~~~~~~~~~-----------s~i~~~F~g~~~~~~~C~~C~~~s~~~e~f~~lsl~i~~~~~~~~~~sl~~~ 211 (355)
T 3i3t_A 143 DDDRANLMWKRYLERED-----------SKIVDLFVGQLKSCLKCQACGYRSTTFEVFCDLSLPIPKKGFAGGKVSLRDC 211 (355)
T ss_dssp HHHHHHHHHHHHHHHCC-----------SHHHHHHCEEEEEEEEETTTCCEEEEEEEESSEEECCCC-------CBHHHH
T ss_pred HHHHHHHHHHHhhhccC-----------CcccccccEEEEeeEEeCCCCCCceeeccceeecccCCccccccCccCHHHH
Confidence 11223455666554443 557899999999999996 999999999999999999863 35699999
Q ss_pred HhhcccceeeeC---CccccCCCCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCc-eeeeCCccccCC
Q 010812 415 LRLFSAPENLEG---YRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPL-QLVLGRDLLVTP 490 (500)
Q Consensus 415 L~~~~~~E~L~g---~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~-~LDL~~y~~~~~ 490 (500)
|+.|+++|.+++ +.|+.|++.. .|.|+..|.+||+||+|||+||.++.+...|+++.|.||. .|||.+|+..
T Consensus 212 L~~~~~~e~l~~~n~~~C~~C~~~~--~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~~~-- 287 (355)
T 3i3t_A 212 FNLFTKEEELESENAPVCDRCRQKT--RSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFASD-- 287 (355)
T ss_dssp HHHHHCCEEECGGGCCCCSSSCCCC--CEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGBC---
T ss_pred HHHhCCccccCCCCCeeCCCCCCcc--ceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhccC--
Confidence 999999999998 5566666554 9999999999999999999999999877899999999995 5999999753
Q ss_pred CCCCcceeeC
Q 010812 491 SAEVLQFLNV 500 (500)
Q Consensus 491 ~~~~~~Y~Li 500 (500)
......|+|+
T Consensus 288 ~~~~~~Y~L~ 297 (355)
T 3i3t_A 288 KAGSPVYQLY 297 (355)
T ss_dssp ---CCEEEEE
T ss_pred CCCCcceEEE
Confidence 3445789984
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=100.00 E-value=2.5e-46 Score=385.02 Aligned_cols=240 Identities=22% Similarity=0.327 Sum_probs=199.5
Q ss_pred CCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCC
Q 010812 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGR 276 (500)
Q Consensus 197 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (500)
+.++++||.|+||||||||+||||+++|+||++++...... .....++.++|+.||..|+.. ..
T Consensus 2 ~~~g~~GL~NlGnTCYmNSvLQ~L~~~~~~r~~~~~~~~~~-~~~~~~~~~~l~~lf~~l~~~---------------~~ 65 (353)
T 1nb8_A 2 KHTGYVGLKNQGATCYMNSLLQTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQHS---------------DK 65 (353)
T ss_dssp CCSSCCCBCCCSTTTTHHHHHHHHHTCHHHHHHHHTSCCTT-SCTTTCHHHHHHHHHHHHHHC---------------SS
T ss_pred CCCCCCCcccCchhhHHHHHHHHHHCCHHHHHHHHhCCCCC-CcccccHHHHHHHHHHHHhhc---------------CC
Confidence 35678999999999999999999999999999998654322 223467999999999999843 35
Q ss_pred CcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCC
Q 010812 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNK 356 (500)
Q Consensus 277 ~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~ 356 (500)
++.|..|+..+.. + .|.+++||||||||++|||.||+++....
T Consensus 66 ~~~~~~l~~~~~~--~-----~~~~~~QqDA~EFl~~LLd~L~~~~~~~~------------------------------ 108 (353)
T 1nb8_A 66 PVGTKKLTKSFGW--E-----TLDSFMQHDVQELCRVLLDNVENKMKGTC------------------------------ 108 (353)
T ss_dssp CBCCHHHHHHHTC--C-----BTTTTTTSCHHHHHHHHHHHHHHHTTTST------------------------------
T ss_pred CCCCHHHHhhcCC--C-----CCCcccchhHHHHHHHHHHHHHHHhcCCC------------------------------
Confidence 6889888876642 2 35899999999999999999999764210
Q ss_pred cccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCC
Q 010812 357 SAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA 435 (500)
Q Consensus 357 s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~ 435 (500)
..++|.++|+|++.+.++|. |++.+.+.|+|++|+|+|| +..+|++||+.|+.+|.|+|.+++.|.++
T Consensus 109 ---------~~s~i~~~F~g~~~~~i~C~~C~~~s~~~e~f~~LsL~i~--~~~~l~~~L~~~~~~E~l~~~~~~~C~~c 177 (353)
T 1nb8_A 109 ---------VEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIK--GKKNIFESFVDYVAVEQLDGDNKYDAGEH 177 (353)
T ss_dssp ---------TTTHHHHHHCEEEEEEEEESSSCCEEEEEEEESCEEECCT--TCSBHHHHHHHHTCCEEECTTTCEECGGG
T ss_pred ---------ccchhhhhceeEEEEEEEeccCCCeeceeeeeEEEEEEEC--CCcchHHHHHHhhCccccCCCccccCCcC
Confidence 02468899999999999996 9999999999999999998 56799999999999999999777777777
Q ss_pred ceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 436 GVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 436 ~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
+++.|.|+..|.+||+||+|||+||.|+. +...|+++.|.||+.|||.+|+..........|+|+
T Consensus 178 ~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~ 244 (353)
T 1nb8_A 178 GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILH 244 (353)
T ss_dssp CEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSCCTTSCCEEEEE
T ss_pred ccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhcccCCCCCceEEEE
Confidence 78899999999999999999999999984 456899999999999999999976544566889984
No 6
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=100.00 E-value=3.7e-46 Score=402.79 Aligned_cols=289 Identities=19% Similarity=0.242 Sum_probs=231.7
Q ss_pred CCCCCCCccccccCC-CCCcccccccccCC-CCCCC-------CccCcccCCC-CccccCCCCCCccccCCCchhHHHHH
Q 010812 148 ANPSPISKFHVLCDG-NIDGRDQNAAACNS-SISGS-------KEVPMKAINE-PVKSVKDLLPRGLINSGNLCFLNATL 217 (500)
Q Consensus 148 ~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~-~~~~~-------~~~~~~~~~~-~~~~~~~~~~~GL~NlGNTCYmNSvL 217 (500)
+.+...+.|.....+ ||..|+.+..+.++ +|.+. .......|++ .+.+....+++||.|+||||||||+|
T Consensus 112 ~~~~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g~~~~~~~~~g~~GL~NlGnTCYmNSvL 191 (522)
T 2f1z_A 112 FSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQGATCYMNSLL 191 (522)
T ss_dssp EEEECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBSSCCCTTTTTSCCCBCCC--CTTHHHHH
T ss_pred eeccceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeeccccccccCCccccCCccceecCcccHHHHHHH
Confidence 344556777766666 99999999988653 34432 1122234555 56677788999999999999999999
Q ss_pred HHHhCCHHHHHHHHHhhcCCCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCCCCCcChHHHHHHHHhhCCCCCCC
Q 010812 218 QALMSCSPFVQLLQELRTRDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDIGRPFSPSMFEAVLKNFTPDVPNS 297 (500)
Q Consensus 218 Q~L~~~p~fr~~l~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~isP~~f~~~l~~~~p~f~~~ 297 (500)
|||+++|+||++++...... .....++.++|+.||..|+.. ..++.|..|+..+. +.
T Consensus 192 Q~L~~~~~fr~~~~~~~~~~-~~~~~~~~~~l~~lf~~l~~~---------------~~~~~~~~l~~~~~-------~~ 248 (522)
T 2f1z_A 192 QTLFFTNQLRKAVYMMPTEG-DDSSKSVPLALQRVFYELQHS---------------DKPVGTKKLTKSFG-------WE 248 (522)
T ss_dssp HHHHTCHHHHHHHHTCCCCS-SCTTTCHHHHHHHHHHHHHHC---------------SSCBCCTTHHHHTC-------CC
T ss_pred HHHhccHHHHHHHhhccccC-CcccchHHHHHHHHHHHHhcC---------------CCccCcHHHHhhcC-------Cc
Confidence 99999999999998654322 223467999999999999843 35678888776543 23
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhCCCCCcccccccccCCcccccccccE
Q 010812 298 ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQ 377 (500)
Q Consensus 298 ~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~ 377 (500)
.|.+++||||||||++|||.||+++.... ..++|.++|+|+
T Consensus 249 ~~~~~~QqDa~Efl~~LLd~L~~~l~~~~---------------------------------------~~s~i~~lF~G~ 289 (522)
T 2f1z_A 249 TLDSFMQHDVQELCRVLLDNVENKMKGTC---------------------------------------VEGTIPKLFRGK 289 (522)
T ss_dssp TTTSSTTSCHHHHHHHHHHHHHHHHTTST---------------------------------------TTTHHHHHHCEE
T ss_pred cCCCcccccHHHHHHHHHHHHHhhccCCc---------------------------------------cccchhhheeEE
Confidence 35899999999999999999999875311 024588999999
Q ss_pred EEeEEEeC-CCcccccccCCccceeccccCcccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEE
Q 010812 378 LKSVVKAQ-GNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILH 456 (500)
Q Consensus 378 l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIh 456 (500)
+.+.++|. |++.+.+.|+|++|+|+|+ +..+|++||+.|+.+|.|+|.+++.|.+++++.|.|+..|.+||+||+||
T Consensus 290 ~~s~i~C~~C~~~s~~~e~f~~LsL~i~--~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~ 367 (522)
T 2f1z_A 290 MVSYIQCKEVDYRSDRREDYYDIQLSIK--GKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQ 367 (522)
T ss_dssp EEEEECCSSSCCCCCEEEEESCEEECCT--TCCBHHHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEE
T ss_pred EEEEEEcCCCCceeeeeeeeEEEEEEeC--CcccchHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEE
Confidence 99999996 9999999999999999998 56899999999999999999877777777778999999999999999999
Q ss_pred ecceeeCC--CCeeeccceeeeCceeeeCCccccCCCCCCcceeeC
Q 010812 457 LMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLVTPSAEVLQFLNV 500 (500)
Q Consensus 457 LkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~~~~~~~~~Y~Li 500 (500)
|+||.|+. +...|++++|.||..|||.+|+..........|+|+
T Consensus 368 LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~~~~~~~~Y~L~ 413 (522)
T 2f1z_A 368 LMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILH 413 (522)
T ss_dssp ECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSCCTTSCCEEEEE
T ss_pred EEeEEEcccCCcceEcCcEEeCCCeecchhhhccccCCCCcEEEEE
Confidence 99999994 457899999999999999999976544566889984
No 7
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=100.00 E-value=1.8e-44 Score=376.90 Aligned_cols=251 Identities=22% Similarity=0.288 Sum_probs=194.9
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCC----CCCCcHHHHHHHHHHhcCCCCCCCCccccccccC
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIP----KAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLD 273 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~----~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 273 (500)
..+++||.|+||||||||+||||+++|+||++|......... ....+++++|+.||..||.
T Consensus 11 ~~~~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~--------------- 75 (404)
T 2ayn_A 11 MELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDK--------------- 75 (404)
T ss_dssp CCCCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHH---------------
T ss_pred cCCCCCcccCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhc---------------
Confidence 456899999999999999999999999999999875432101 1235789999999999984
Q ss_pred CCCCcChHHHHHHHHhhCCCCCCC-CCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHhC
Q 010812 274 IGRPFSPSMFEAVLKNFTPDVPNS-ISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETVG 352 (500)
Q Consensus 274 ~~~~isP~~f~~~l~~~~p~f~~~-~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 352 (500)
...+++|..|+.+++...+.|.+. .+.+++||||||||++|||.||+++........ ....+...|..+.
T Consensus 76 ~~~~v~P~~~~~~l~~~~~~f~~~~~~~~~~QqDA~Efl~~lLd~L~~~~~~~~~~~~---------~e~~~~~~~~~~~ 146 (404)
T 2ayn_A 76 TSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSV---------KETDSSSASAATP 146 (404)
T ss_dssp HCSEECCHHHHHHHHHHCGGGGCBCTTSCBCCCCHHHHHHHHHHHHHTTSCCCCCC------------------------
T ss_pred CCCcCChHHHHHHHHHhCchhhccccCCCccccCHHHHHHHHHHHHHHHhccccCCcc---------cccchhhhhhhhc
Confidence 247899999999999988887321 134789999999999999999998754221100 0001223344332
Q ss_pred CCCCcccccccccCCcccccccccEEEeEEEeC-CCccc--ccccCCccceeccccCcccCHHHHHhhcccceeeeCCcc
Q 010812 353 PKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRT 429 (500)
Q Consensus 353 ~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S--~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g~~c 429 (500)
... .++|.++|+|++.+.++|. |++.+ .+.|+|++|+|+|+.. ..+|++||+.|+. |.++ +.|
T Consensus 147 ~~~-----------~s~i~~~F~G~l~s~i~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~~-e~l~-~~c 212 (404)
T 2ayn_A 147 SKK-----------KSLIDQFFGVEFETTMKCTESEEEEVTKGKENQLQLSCFINQE-VKYLFTGLKLRLQ-EEIT-KQS 212 (404)
T ss_dssp --------------CCHHHHHTCEEEEEEEEESSSCCCCCBCCEEEESSEEEECSSS-CCBHHHHHHHTTE-ECCC-CEE
T ss_pred ccc-----------CchhhhhccEEEEEEEEecCCCCccCceeeccCceEEeecCCC-cccHHHHHHHhcc-ccee-ecc
Confidence 222 3568999999999999996 98884 7999999999999742 4689999999987 5565 788
Q ss_pred ccCCCCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCcccc
Q 010812 430 SSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 430 ~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
+.|++.. .+.|+..|.+||+||+|||+||.|+. +...|++++|.||..|||.+|+..
T Consensus 213 ~~c~~~~--~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~ 271 (404)
T 2ayn_A 213 PTLQRNA--LYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTP 271 (404)
T ss_dssp TTTTEEC--CEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCH
T ss_pred hhhCCcc--ceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcCh
Confidence 8888765 89999999999999999999999994 356899999999999999999864
No 8
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=100.00 E-value=9.4e-43 Score=365.62 Aligned_cols=229 Identities=22% Similarity=0.266 Sum_probs=185.0
Q ss_pred CCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCC--------CCcHHHHHHHHHHhcCCCCCCCCcccc
Q 010812 197 KDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKA--------GYPTLTAFVGFVSDFDTPSGGSSKKKN 268 (500)
Q Consensus 197 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~--------~~~l~~~l~~L~~~l~~~~~~~~~~~~ 268 (500)
...+++||.|+||||||||+||||+++|+||++|........... ..+++++|+.||..||..
T Consensus 20 ~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~--------- 90 (415)
T 1vjv_A 20 FAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNK--------- 90 (415)
T ss_dssp CCCCCCEECCCSSCHHHHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred cCCCCCCCEeCCcccHHHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcC---------
Confidence 345689999999999999999999999999999987653321111 237999999999999853
Q ss_pred ccccCCCCCcChHHHHHHHHhhCCCCCCCCCC--CCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhh
Q 010812 269 ISVLDIGRPFSPSMFEAVLKNFTPDVPNSISG--RPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEED 346 (500)
Q Consensus 269 ~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~--~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (500)
...+++|..|+.+++...+.|.+.... +++||||||||.+||+.|++++..
T Consensus 91 -----~~~~v~p~~~~~~l~~~~~~f~~~~~~~~~~~QqDa~Efl~~lLd~L~~~~~~---------------------- 143 (415)
T 1vjv_A 91 -----SFKSVLPVVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMSIVFGD---------------------- 143 (415)
T ss_dssp ------CCEECCHHHHHHHHHHCGGGGCBC----CBCCCCHHHHHHHHHHHHHHHHTH----------------------
T ss_pred -----CCCccCHHHHHHHHHHhCchhhccccCCCCccccCHHHHHHHHHHHHHHHhcc----------------------
Confidence 257899999999999988877322111 799999999999999999998842
Q ss_pred hHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCccc--ccccCCccceeccccCcccCHHHHHhhccccee
Q 010812 347 EWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKAS--ATVQPFLLLHLDIYSEAVHTIEDALRLFSAPEN 423 (500)
Q Consensus 347 ~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S--~r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~ 423 (500)
++|.++|+ ++.+.++|. |++.+ .+.|+|++|+|+|+.. ..+|++||+.|+. |.
T Consensus 144 ---------------------~~i~~~F~-~~~~~~~C~~C~~~s~s~~~e~f~~Lsl~i~~~-~~~l~~~L~~~~~-e~ 199 (415)
T 1vjv_A 144 ---------------------KFSEDFRI-QFKTTIKDTANDNDITVKENESDSKLQCHISGT-TNFMRNGLLEGLN-EK 199 (415)
T ss_dssp ---------------------HHHTTTCE-EEEEEEEETTEEEEEEEECCCEESCEEECCCTT-CCBHHHHHHHHHE-EC
T ss_pred ---------------------chHHHHHH-hheEEEEECCCCCCccccccccceeeeeccccc-cchHHHHHHHHhh-hh
Confidence 24789999 999999996 98876 6999999999999742 3589999999987 45
Q ss_pred eeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeCC--CCeeeccceeeeCceeeeCCcccc
Q 010812 424 LEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGS--QGSTKLHKSVRFPLQLVLGRDLLV 488 (500)
Q Consensus 424 L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~--~~~~Ki~~~V~FP~~LDL~~y~~~ 488 (500)
++ +.|+.|++.. .|.|+.+|.+||+||+|||+||.|+. +...|++++|.||..|||.+|+..
T Consensus 200 i~-~~c~~c~~~~--~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~ 263 (415)
T 1vjv_A 200 IE-KRSDLTGANS--IYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTP 263 (415)
T ss_dssp ----------CCC--CEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCH
T ss_pred hh-hcccccCCcc--cEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcCh
Confidence 65 7899898776 89999999999999999999999994 346899999999999999999853
No 9
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=100.00 E-value=1.8e-42 Score=369.87 Aligned_cols=263 Identities=21% Similarity=0.288 Sum_probs=201.1
Q ss_pred CCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcC---CCCCCCCcHHHHHHHHHHhcCCCCCCCCccccccccCC
Q 010812 198 DLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTR---DIPKAGYPTLTAFVGFVSDFDTPSGGSSKKKNISVLDI 274 (500)
Q Consensus 198 ~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~---~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 274 (500)
..+.+||.|+||||||||+||+|+++|+||+++...... .......++.++|..++..||....... .....
T Consensus 138 ~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~-----~~~~~ 212 (476)
T 3mhs_A 138 RDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYGALNTKQ-----ASSSS 212 (476)
T ss_dssp TTCCCCCCCSSSTHHHHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHSCCCC------------
T ss_pred CCCCCCCCcCCccHHHHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhhcccccc-----ccccc
Confidence 457799999999999999999999999999999754321 1223456799999999999986432110 00112
Q ss_pred CCCcChHHHHHHHH---hhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhhhhhHhHh
Q 010812 275 GRPFSPSMFEAVLK---NFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAEEDEWETV 351 (500)
Q Consensus 275 ~~~isP~~f~~~l~---~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 351 (500)
...+.|..++..+. +..+.| .+++||||||||.+|||.||+++........ +.+...
T Consensus 213 ~~~~~~~~~~~~l~~~~~~~~~f-----~~~~QqDA~EFl~~LLd~L~~~~~~~~~~~~---------------~~~~~~ 272 (476)
T 3mhs_A 213 TSTNRQTGFIYLLTCAWKINQNL-----AGYSQQDAHEFWQFIINQIHQSYVLDLPNAK---------------EVSRAN 272 (476)
T ss_dssp -CCCSCHHHHHHHHHHHHHCGGG-----SSSSCEEHHHHHHHHHHHHHHHHHHHCCC----------------------C
T ss_pred ccccCcchHHHHHHHHHHhcccc-----CCCCCcCHHHHHHHHHHHHHHHHhhcccccc---------------cccccc
Confidence 23566766665554 666655 8999999999999999999999875433211 001111
Q ss_pred CCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccc-cccCCccceeccccCcccCHHHHHhhcccceeeeC--C
Q 010812 352 GPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASA-TVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEG--Y 427 (500)
Q Consensus 352 ~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~-r~e~F~~LsL~Ip~~~~~sL~d~L~~~~~~E~L~g--~ 427 (500)
. ....++|.++|+|++.+.++|. |++.+. +.++|++|+|+|+ +..+|+++|+.|+++|.+++ +
T Consensus 273 ~-----------~~~~s~i~~~F~G~l~~~~~C~~C~~~s~~~~e~f~~LsL~i~--~~~sl~~~L~~~~~~E~l~~~~~ 339 (476)
T 3mhs_A 273 N-----------KQCECIVHTVFEGSLESSIVCPGCQNNSKTTIDPFLDLSLDIK--DKKKLYECLDSFHKKEQLKDFNY 339 (476)
T ss_dssp C-----------CSCCSHHHHHSCEEEEEEEECTTTCCCCEEEEEEESCEEECCT--TCCBHHHHHHHHHCCEECSSCCC
T ss_pred c-----------ccCCCcceeecceEEEEEEEECCCCCeeCCcccchhhhccchh--hhhHHHHHHHHhcChhhccCCCC
Confidence 0 1123678999999999999996 988874 5999999999998 56899999999999999986 6
Q ss_pred ccccCCCCceeeEEEEEEcccCccceEEEecceeeC-CCCeeeccceeeeCceeeeCCccccCCC--------CCCccee
Q 010812 428 RTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHKSVRFPLQLVLGRDLLVTPS--------AEVLQFL 498 (500)
Q Consensus 428 ~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d-~~~~~Ki~~~V~FP~~LDL~~y~~~~~~--------~~~~~Y~ 498 (500)
.|..|+... .|.|+..|.+||+||+|||+||.|+ .+...|++++|.||+.|||.+|+..... .....|+
T Consensus 340 ~C~~C~~~~--~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~ 417 (476)
T 3mhs_A 340 HCGECNSTQ--DAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCSTKEKDKHSENGKVPDIIYE 417 (476)
T ss_dssp EETTTTEEC--CCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSCCBCCC--CCCBCCCEEEE
T ss_pred cCCccCCcc--cEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCcccccccccccCCCCCcEE
Confidence 677666554 8999999999999999999999998 4567899999999999999999875432 2457799
Q ss_pred eC
Q 010812 499 NV 500 (500)
Q Consensus 499 Li 500 (500)
|+
T Consensus 418 L~ 419 (476)
T 3mhs_A 418 LI 419 (476)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.6e-42 Score=389.89 Aligned_cols=245 Identities=18% Similarity=0.276 Sum_probs=200.1
Q ss_pred ccCCCCCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhc----CCCCCCCCcHHHHHHHHHHhcCCCCCCCCccc---
Q 010812 195 SVKDLLPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRT----RDIPKAGYPTLTAFVGFVSDFDTPSGGSSKKK--- 267 (500)
Q Consensus 195 ~~~~~~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~----~~~~~~~~~l~~~l~~L~~~l~~~~~~~~~~~--- 267 (500)
+....+++||.|+||||||||+||+|+++|+||++|+.... ........++.++|++|+..||....+.....
T Consensus 338 p~~~~G~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~~~s~~~~~~~~ 417 (854)
T 3ihp_A 338 PLFGPGYTGIRNLGNSCYLNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSGEYSKPVPESGD 417 (854)
T ss_dssp CCCSTTCCCBCCCSSCHHHHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSCC----------
T ss_pred cccCCCccceEecCCceehhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhccccccccccccc
Confidence 33456779999999999999999999999999999864221 12234456799999999999986542210000
Q ss_pred ---cccccCCCCCcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcCCCccCCCcccccchhh
Q 010812 268 ---NISVLDIGRPFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDELLKLQGESTSINGANTALVSLAE 344 (500)
Q Consensus 268 ---~~~~~~~~~~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee~~~~~~~~~~~~~~~~~~~~~~~ 344 (500)
..........++|..|+.+++..++.| .+++||||||||.+|||.||+++..
T Consensus 418 ~~~~~~~~~~~~~isP~~f~~~l~~~~~~F-----~~~~QQDA~EFl~~LLd~L~~el~~-------------------- 472 (854)
T 3ihp_A 418 GERVPEQKEVQDGIAPRMFKALIGKGHPEF-----STNRQQDAQEFFLHLINMVERNCRS-------------------- 472 (854)
T ss_dssp -----------CCBCCHHHHHHHTTTCTTT-----TSSSCCBHHHHHHHHHHHHHHTCTT--------------------
T ss_pred cccccccccCCCccChHHHHHHHhhhcccc-----ccccccCHHHHHHHHHHHHHHHhcc--------------------
Confidence 000113467899999999999988777 8999999999999999999997631
Q ss_pred hhhHhHhCCCCCcccccccccCCcccccccccEEEeEEEeC-CCcccccccCCccceeccccCc----------------
Q 010812 345 EDEWETVGPKNKSAVTRTQSFLPSALSDIFGGQLKSVVKAQ-GNKASATVQPFLLLHLDIYSEA---------------- 407 (500)
Q Consensus 345 ~~~w~~~~~~n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~-c~~~S~r~e~F~~LsL~Ip~~~---------------- 407 (500)
.+.|.++|+|++.++++|. |++++.+.++|++|+|+||...
T Consensus 473 ----------------------~s~i~~lF~G~l~s~i~C~~C~~vs~t~e~F~~LsL~Ip~~~~~~~~~~~~~~~~~~~ 530 (854)
T 3ihp_A 473 ----------------------SENPNEVFRFLVEEKIKCLATEKVKYTQRVDYIMQLPVPMDAALNKEELLEYEEKKRQ 530 (854)
T ss_dssp ----------------------SCCGGGGTCEEEEEEEEETTTTEEEEEEEEESEEEECCCGGGCTTHHHHHHHHHHHHH
T ss_pred ----------------------cCCchhhcCceEEEEEEecCCCCEeEEeeeceEEEeeCCccccccccchhhhcccccc
Confidence 1347899999999999995 9999999999999999998521
Q ss_pred --------------ccCHHHHHhhcccceeeeCCccccCCCCceeeEEEEEEcccCccceEEEecceeeC-CCCeeeccc
Q 010812 408 --------------VHTIEDALRLFSAPENLEGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYG-SQGSTKLHK 472 (500)
Q Consensus 408 --------------~~sL~d~L~~~~~~E~L~g~~c~~C~~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d-~~~~~Ki~~ 472 (500)
..+|++||+.|+++|.|+||.|..|+... .|.|+..|.+||+||+|||+||.|+ .+...|+++
T Consensus 531 ~~~~g~~~~~~~~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k~--~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~ 608 (854)
T 3ihp_A 531 AEEEKMALPELVRAQVPFSSCLEAYGAPEQVDDFWSTALQAKS--VAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDV 608 (854)
T ss_dssp HHHTTCCCCCCCCEECCHHHHHHHHHSCEEEEEEEETTTTEEE--EEEEEEEESSCCSEEEEEECCEEECGGGCEEECCE
T ss_pred cccccccccccccCCCCHHHHHHHhcCceEeeeeeccccCCcc--eeeEEEEeeeCCceEEEEeehheecCCCceEECCe
Confidence 25999999999999999999999888755 9999999999999999999999997 566789999
Q ss_pred eeeeCceeeeCCcccc
Q 010812 473 SVRFPLQLVLGRDLLV 488 (500)
Q Consensus 473 ~V~FP~~LDL~~y~~~ 488 (500)
+|.||+.|||++|+..
T Consensus 609 ~V~FP~~LDl~~y~~~ 624 (854)
T 3ihp_A 609 SIEMPEELDISQLRGT 624 (854)
T ss_dssp ECCCCSEEECGGGBCC
T ss_pred EEecCCcEehHHhccC
Confidence 9999999999999864
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=99.86 E-value=1.8e-23 Score=210.67 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=126.0
Q ss_pred CCCccccCCCchhHHHHHHHHhCCHHHHHHHHHhhcCCCCCCC--CcHHHHH-HHHHHhcCCCCCCCCccccccccCCCC
Q 010812 200 LPRGLINSGNLCFLNATLQALMSCSPFVQLLQELRTRDIPKAG--YPTLTAF-VGFVSDFDTPSGGSSKKKNISVLDIGR 276 (500)
Q Consensus 200 ~~~GL~NlGNTCYmNSvLQ~L~~~p~fr~~l~~~~~~~~~~~~--~~l~~~l-~~L~~~l~~~~~~~~~~~~~~~~~~~~ 276 (500)
.|+||.|+||||||||.||||+.+|.++..|..+...... .. ..+..+| ..|+..|. ..
T Consensus 8 ~p~GLqNlgNTCYLNSTLq~Lfsipel~d~Ll~~~~~~~~-~~~~~~l~~~L~r~i~~~Lr-----------------k~ 69 (374)
T 2vhf_A 8 KKKGIQGHYNSCYLDSTLFCLFAFSSVLDTVLLRPKEKND-VEYYSETQELLRTEIVNPLR-----------------IY 69 (374)
T ss_dssp ESCEECCCSSCHHHHHHHHHHHSSBGGGHHHHHCCCCTTS-CTTHHHHHHHHHHTTHHHHH-----------------HT
T ss_pred CCccccCCCcCcHHHHHHHHHHhchHHHHHHHhCCCCCCc-chhHHHHHHHHHHHHHHHHh-----------------hc
Confidence 4799999999999999999999999999999887433222 11 2467777 78888875 26
Q ss_pred CcChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHHHHHHHH-HH-hhhcCCCccCCCcccccchhhhhhHhHhCCC
Q 010812 277 PFSPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIMDQMHDE-LL-KLQGESTSINGANTALVSLAEEDEWETVGPK 354 (500)
Q Consensus 277 ~isP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LLd~L~ee-~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (500)
++.|..|+..|++..|+|+...-.+++||||.||+..||..|... .. +... +
T Consensus 70 ~~~P~~~l~~LR~~~pQfae~~G~~~~QQDaEE~~t~Ll~~L~~~ep~lkl~s---------~----------------- 123 (374)
T 2vhf_A 70 GYVCATKIMKLRKILEKVEAASGFTSEEKDPEEFLNILFHHILRVEPLLKIRS---------A----------------- 123 (374)
T ss_dssp SEECHHHHHHHHHHHHHHC--------CCCHHHHHHHHHTTTTCCCCSEEEEE---------T-----------------
T ss_pred CCCcHHHHHHHHHHhHHHhcccCCCccccCHHHHHHHHHHHHhhccccccccc---------c-----------------
Confidence 799999999999999999554222699999999999999988742 10 0000 0
Q ss_pred CCcccccccccCCcccccccccEEEeEEEeCCCcccccccCCccceeccccCcccCHHHHHh-hcccceeeeCCccccCC
Q 010812 355 NKSAVTRTQSFLPSALSDIFGGQLKSVVKAQGNKASATVQPFLLLHLDIYSEAVHTIEDALR-LFSAPENLEGYRTSSTG 433 (500)
Q Consensus 355 n~s~i~~~~s~~~s~I~~lF~G~l~s~i~C~c~~~S~r~e~F~~LsL~Ip~~~~~sL~d~L~-~~~~~E~L~g~~c~~C~ 433 (500)
..... .+.+.++|. . .-... ...++..+++ .|+...
T Consensus 124 ----~~~~~---~~~~~q~f~---------E---------~~e~~-------~~e~~~qL~e~nfl~~g----------- 160 (374)
T 2vhf_A 124 ----GQKVQ---DCYFYQIFM---------E---------KNEKV-------GVPTIQQLLEWSFINSN----------- 160 (374)
T ss_dssp ----TCCCE---EESCEECCC---------C---------CC--C-------CCCBHHHHHHHHHHHHT-----------
T ss_pred ----ccccc---ccHHHHHhc---------C---------ccccc-------CCcHHHHhhhHHHHHcC-----------
Confidence 00000 023445554 0 00000 0123333332 111111
Q ss_pred CCceeeEEEEEEcccCccceEEEecceeeCCCCeeeccceeeeCceeeeCCccccCC
Q 010812 434 NAGVVTAKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQLVLGRDLLVTP 490 (500)
Q Consensus 434 ~~~~~~a~k~~~i~~lP~vLiIhLkRF~~d~~~~~Ki~~~V~FP~~LDL~~y~~~~~ 490 (500)
+.|.++|+||+||+.|| +...||-++|.||.+||+.++|...+
T Consensus 161 ----------ikisrLP~yLtVq~vRF----gKkaKIlrkV~fp~eLDvtdl~tdel 203 (374)
T 2vhf_A 161 ----------LKFAEAPSCLIIQMPRF----GKDFKLFKKIFPSLELNITDLLEDTP 203 (374)
T ss_dssp ----------EEESSCCSEEEEECCCC----SSSSSCCCCCBCCSEECCGGGBSSSC
T ss_pred ----------CeeecCCcceEEeeecc----CccccccCCCCCcchhccHhhcCcch
Confidence 12999999999999999 34579999999999999999997654
No 12
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=70.80 E-value=2 Score=36.95 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=17.9
Q ss_pred CCccccCCCchhHHHHHHHH
Q 010812 201 PRGLINSGNLCFLNATLQAL 220 (500)
Q Consensus 201 ~~GL~NlGNTCYmNSvLQ~L 220 (500)
..|+.|..++|++|++||..
T Consensus 13 fys~pN~hdncWLNtilQLf 32 (167)
T 1qmy_A 13 FYSRPNNHDNAWLNAILQLF 32 (167)
T ss_dssp CCCCCCSSSCHHHHHHHHHH
T ss_pred cccCCCCCcchHHHHHHHHH
Confidence 46899999999999999965
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=66.36 E-value=5.4 Score=36.88 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=20.7
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 010812 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIM 315 (500)
Q Consensus 279 sP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LL 315 (500)
.|..|...+-.... ...++--||+++|..|+
T Consensus 50 d~~~fV~~~Ya~~~------~~~G~~gDa~~~L~~Ll 80 (211)
T 3mp2_A 50 DVMDFVNLCYAATT------LARGHSGDAEYLLELML 80 (211)
T ss_dssp CCHHHHHHHHHHHT------CCTTSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHHcC------CCCCCCcCHHHHHHHHH
Confidence 34555554443321 15689999999999998
No 14
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=50.12 E-value=24 Score=34.65 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=21.4
Q ss_pred ChHHHHHHHHhhCCCCCCCCCCCCCCCchHHHHHHHH
Q 010812 279 SPSMFEAVLKNFTPDVPNSISGRPRQEDAQEFLSFIM 315 (500)
Q Consensus 279 sP~~f~~~l~~~~p~f~~~~f~~~~QqDA~EFL~~LL 315 (500)
.|..|...+-..... .-++--||+++|..||
T Consensus 144 d~~~FVa~~Ya~~~~------~~G~~gDa~~~L~~Ll 174 (315)
T 2fe8_A 144 DAANFCALILAYSNK------TVGELGDVRETMTHLL 174 (315)
T ss_dssp CCHHHHHHHHHHTTC------CTTSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHhcCC------CCCCCccHHHHHHHHH
Confidence 456666655554322 4689999999999983
Done!