BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010813
         (500 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2IM9|A Chain A, Crystal Structure Of Protein Lpg0564 From Legionella
           Pneumophila Str. Philadelphia 1, Pfam Duf1460
          Length = 333

 Score = 30.0 bits (66), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 377 HDKYRPRKPKYFNRVH-TGYEWNKYNQ 402
           H +Y+  K  Y NR H T  +WN YNQ
Sbjct: 120 HTRYKNGKRSYINRNHFTSIDWNNYNQ 146


>pdb|1LE2|A Chain A, Structural Basis For Altered Function In The Common
           Mutants Of Human Apolipoprotein-E
          Length = 144

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 134 WELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKI 193
           WELA  R  D L   +   EQ   ELL+      S +  ++R L+D +T KEL+A ++++
Sbjct: 4   WELALGRFWDYLRWVQTLSEQVQEELLS------SQVTQELRALMD-ETMKELKAYKSEL 56

Query: 194 ELQM 197
           E Q+
Sbjct: 57  EEQL 60


>pdb|1BZ4|A Chain A, Apolipoprotein E3 (Apo-E3), Truncation Mutant 165
          Length = 144

 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 134 WELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKI 193
           WELA  R  D L   +   EQ   ELL+      S +  ++R L+D +T KEL+A ++++
Sbjct: 5   WELALGRFWDYLRWVQTLSEQVQEELLS------SQVTQELRALMD-ETMKELKAYKSEL 57

Query: 194 ELQM 197
           E Q+
Sbjct: 58  EEQL 61


>pdb|1LPE|A Chain A, Three-Dimensional Structure Of The Ldl Receptor-Binding
           Domain Of Human Apolipoprotein E
          Length = 144

 Score = 28.5 bits (62), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 7/64 (10%)

Query: 134 WELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKI 193
           WELA  R  D L   +   EQ   ELL+      S +  ++R L+D +T KEL+A ++++
Sbjct: 4   WELALGRFWDYLRWVQTLSEQVQEELLS------SQVTQELRALMD-ETMKELKAYKSEL 56

Query: 194 ELQM 197
           E Q+
Sbjct: 57  EEQL 60


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,746,079
Number of Sequences: 62578
Number of extensions: 640430
Number of successful extensions: 1532
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1532
Number of HSP's gapped (non-prelim): 17
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)