Query 010813
Match_columns 500
No_of_seqs 139 out of 234
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 04:51:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2370 Cactin [Signal transdu 100.0 9E-145 2E-149 1117.8 35.0 475 2-500 129-623 (623)
2 PF09732 CactinC_cactus: Cactu 100.0 9.8E-77 2.1E-81 526.0 12.6 125 376-500 1-125 (125)
3 PF10312 Cactin_mid: Conserved 100.0 1.1E-62 2.5E-67 470.1 18.2 186 30-229 1-191 (191)
4 KOG0227 Splicing factor 3a, su 99.7 1.7E-18 3.7E-23 163.7 5.2 79 414-495 128-214 (222)
5 COG5246 PRP11 Splicing factor 99.4 5.3E-13 1.1E-17 126.0 5.6 75 416-495 136-218 (222)
6 KOG2370 Cactin [Signal transdu 93.3 1.5 3.4E-05 48.0 13.5 130 42-239 147-287 (623)
7 PF10312 Cactin_mid: Conserved 85.0 2.1 4.5E-05 41.8 6.0 48 173-220 64-112 (191)
8 PF06465 DUF1087: Domain of Un 50.0 22 0.00048 29.3 3.5 13 201-213 20-32 (66)
9 KOG2435 Uncharacterized conser 37.2 86 0.0019 32.6 6.2 94 380-494 184-297 (323)
10 PF04889 Cwf_Cwc_15: Cwf15/Cwc 33.2 78 0.0017 32.2 5.3 20 2-21 152-171 (244)
11 smart00774 WRKY DNA binding do 26.4 1.6E+02 0.0035 23.7 5.0 45 393-446 3-47 (59)
12 PF11861 DUF3381: Domain of un 25.9 71 0.0015 30.3 3.4 40 66-111 34-75 (159)
13 TIGR01994 SUF_scaf_2 SUF syste 25.6 1.4E+02 0.0031 27.3 5.2 50 173-222 70-122 (137)
14 KOG1029 Endocytic adaptor prot 25.6 1.3E+03 0.027 28.0 20.4 45 183-227 548-600 (1118)
15 PRK06654 fliL flagellar basal 24.2 87 0.0019 30.6 3.6 31 168-198 127-160 (181)
16 PF14775 NYD-SP28_assoc: Sperm 24.2 1.4E+02 0.0031 23.9 4.3 35 206-240 1-40 (60)
17 PF14147 Spore_YhaL: Sporulati 23.5 1.2E+02 0.0025 24.1 3.5 27 8-34 20-50 (52)
18 PF05851 Lentivirus_VIF: Lenti 22.6 37 0.00079 34.2 0.7 11 372-382 98-108 (251)
19 PF07321 YscO: Type III secret 21.7 2.8E+02 0.0061 26.3 6.4 48 1-48 1-54 (152)
No 1
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=100.00 E-value=9.2e-145 Score=1117.81 Aligned_cols=475 Identities=50% Similarity=0.888 Sum_probs=402.1
Q ss_pred hHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHH-HHHHhhhHHHhhhhhhhhhhhhhhhhhhhcCCCchhhHHhhhccCCC
Q 010813 2 QAEIEKVKKRREERALEKARHEEEMALLARER-ARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSGSD 80 (500)
Q Consensus 2 ~~EiEkvkkrR~eRE~E~~~~Eee~~~l~R~r-e~~~~~ew~~kEd~F~L~Qak~Rs~IRi~egRaKPID~La~~l~~~~ 80 (500)
+.|+++||+||++|+.|++++|+++.++||.+ ++.||.+|..|| ||+.|+|+||.|||++|||||||+|++++.+.+
T Consensus 129 l~evekvkk~reer~~eka~~Ede~mmlqrar~aa~qf~d~~~ke--Fh~dq~KlrseIrl~~Grak~idll~~~~dfgd 206 (623)
T KOG2370|consen 129 LPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQFKDWRSKE--FHFDQDKLRSEIRLRPGRAKPIDLLKNYIDFGD 206 (623)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhccccccc--chhhhHhhhheeeecCCccchhhHHHhhhcccc
Confidence 56999999999999999999999999999999 999999999999 999999999999999999999999999999999
Q ss_pred CCcccccchhhhhcCCCHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhh
Q 010813 81 DLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELL 160 (500)
Q Consensus 81 ~~dv~l~eP~~i~~gL~~~dleeL~~DIk~y~~Le~~~~~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~ 160 (500)
++|++|++||.||.||+++|||+|..||++|.+||+ ++++..||++|.+||+++|+..+ .+.+
T Consensus 207 eldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~-~~kr~tyW~~v~~iv~delq~~~--~aqn-------------- 269 (623)
T KOG2370|consen 207 ELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET-NQKRLTYWKDVIMIVNDELQHNK--VAQN-------------- 269 (623)
T ss_pred hhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHH--hhhh--------------
Confidence 999999999999999999999999999999999998 68999999999999999998763 2211
Q ss_pred hhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010813 161 AEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHAKMLRKHLQRLE 240 (500)
Q Consensus 161 ~~~~gIh~sV~~DI~~il~gKS~~eL~~Le~qI~~KL~sg~~~Dv~YWE~lLk~L~v~kAka~Lr~~h~~~l~~~l~~l~ 240 (500)
.++.+||++|..||..||.|||++||++|+.||.+||+||.++|++||+.||++|++|||+|+|+++|+.+|+.+|..|+
T Consensus 270 sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~ykAra~Lke~h~e~Lr~~l~~Lk 349 (623)
T KOG2370|consen 270 SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSYKARARLKETHNEELRIRLNKLK 349 (623)
T ss_pred ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 13356999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhhcccCCCCCcc-cccccC----------CCCCCCCCCCCCcccc--h-HHhhhcCCC--CCCCCCCCCCCcCC
Q 010813 241 QPSEVAKFETDLDSMPEA-EVIEHD----------DNDAGNFSPEPVLEDT--Q-EAEKEAGSF--SPELLHGDDDEEAI 304 (500)
Q Consensus 241 ~~q~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~--~-~~~~~~~~~--sp~~~~~~~~~~~i 304 (500)
+.+..++.+..+..+... ++.++. +.......+.++..+. + .+.+.+|+| ||.+|+.++.+...
T Consensus 350 ~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~l~~e~~d~~rel~~~gny~~S~~yi~~~~ptqa~ 429 (623)
T KOG2370|consen 350 NEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRPLPEELADYERELYDAGNYVKSPTYIPESDPTQAQ 429 (623)
T ss_pred hhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCCCchHHHHHHHHHHHccccccCcccccCCCccccc
Confidence 988777655433333211 111111 1111222333333221 2 236889999 99999987655555
Q ss_pred Ch-hHHHH-HHHHHHHHHHHHHHH-HHHHhhhCCCCCCChHHHHHHHHHccccccCcccccCCcccccCCccccccccCC
Q 010813 305 DP-DEDRA-LLERKRIAVLEDQQR-RIQEAMASKPTPSDDNFELKAMKAMGAMEEGDAVFGSGAEVNLDSQVYWWHDKYR 381 (500)
Q Consensus 305 ~~-~~~~~-~l~~~r~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~E~~f~~~~ev~l~~~~y~W~dKYR 381 (500)
|| ..+.. +|...+..+..++.. ++.-.+.+.+++. .+++.+ .+..||+.++++|++ |++|++++|+|+||||
T Consensus 430 dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPq--e~em~a-~a~eGMq~~eaifga--E~~Lda~~~lw~Dkyr 504 (623)
T KOG2370|consen 430 DPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQ--ELEMLA-DAVEGMQTDEAIFGA--EVNLDAEVYLWHDKYR 504 (623)
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcH--HHHHHH-HHHhcccccchhccc--hhcccchhhhhccCcC
Confidence 55 22333 344434444332222 2222223333444 344444 346679999999985 8999999999999999
Q ss_pred CCCCcccccccccccccccccccCCCCCCCcccceeEEEEEecCCCCCCCCCCcEEEeecCCCCCeEEEEEecCCCCcce
Q 010813 382 PRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDI 461 (500)
Q Consensus 382 PRKPrYFNRV~TGyEWNKYNQTHYD~DNPPPKvvqGy~FnifYP~l~D~~~~P~~~i~~~~~~~~~~~l~f~ag~PYedi 461 (500)
||||+||||||||||||||||||||+|||||||||||+||||||||+|++.+|+|+|++|..+++||+|+||||||||||
T Consensus 505 prKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~aP~y~ie~~~d~~d~ciIRF~aGpPYeDI 584 (623)
T KOG2370|consen 505 PRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGRAPTYRIERCRDKNDFCIIRFHAGPPYEDI 584 (623)
T ss_pred cCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhccccCCeeeeeecCCCCceEEEEeccCCcchhh
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eeeeeccccccccCCccceeeccceEEEEEEeecccccC
Q 010813 462 AFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 500 (500)
Q Consensus 462 aFkI~n~ew~~~~~~gf~~~fd~~~~~l~f~Fkr~rYRR 500 (500)
||+|||+||+|||++||+|+|++|||||||+||||||||
T Consensus 585 AFkIVnkeWeyshKrGfKcqF~ngvlqL~F~FKk~ryRR 623 (623)
T KOG2370|consen 585 AFKIVNKEWEYSHKRGFKCQFDNGVLQLWFRFKKYRYRR 623 (623)
T ss_pred hhhhhcchhhhhhhcCccceeeCCeeeeeehhhhhhccC
Confidence 999999999999999999999999999999999999998
No 2
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=100.00 E-value=9.8e-77 Score=525.98 Aligned_cols=125 Identities=82% Similarity=1.605 Sum_probs=123.8
Q ss_pred ccccCCCCCCcccccccccccccccccccCCCCCCCcccceeEEEEEecCCCCCCCCCCcEEEeecCCCCCeEEEEEecC
Q 010813 376 WHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAG 455 (500)
Q Consensus 376 W~dKYRPRKPrYFNRV~TGyEWNKYNQTHYD~DNPPPKvvqGy~FnifYP~l~D~~~~P~~~i~~~~~~~~~~~l~f~ag 455 (500)
|+||||||||+||||||||||||||||||||+||||||+||||+||||||||+|++++|+|+||++.++++||||+||||
T Consensus 1 w~~~~~~~kP~~fnrv~tg~~WnkyN~thYd~dnpPPK~vqGYkFnIfYPdL~d~~~~P~y~i~~~~~~~~~~~L~F~Ag 80 (125)
T PF09732_consen 1 WSDKYRPRKPRYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLIDKSKTPRYRIEPDEDNPDFCILRFHAG 80 (125)
T ss_pred CCccCcccCCcEEEEEEecccccccchhccCCCCCCCceeeeeEEEEECCcccCCCCCCcEEEEECCCCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred CCCcceeeeeeccccccccCCccceeeccceEEEEEEeecccccC
Q 010813 456 PPYEDIAFKIVNKEWEYSHKKGFKCTFERGILHVYFNFKRYRYRR 500 (500)
Q Consensus 456 ~PYediaFkI~n~ew~~~~~~gf~~~fd~~~~~l~f~Fkr~rYRR 500 (500)
||||||||||||||||+|+++||+|+||+|+|||||+|||.+|||
T Consensus 81 pPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~gilqL~F~FKr~~Yrr 125 (125)
T PF09732_consen 81 PPYEDIAFKIVNREWDYSHKRGFRCSFDRGILQLYFNFKRYRYRR 125 (125)
T ss_pred CCCcCEEEEEecCeeecCCCCCceEEeeCCEEEEEEEEEhhhccC
Confidence 999999999999999999999999999999999999999999998
No 3
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=100.00 E-value=1.1e-62 Score=470.06 Aligned_cols=186 Identities=53% Similarity=0.940 Sum_probs=173.7
Q ss_pred HHHHHHHHhhhHHHhhhhhhhhhhhhhhhhhhhcCCCchhhHHhhhccC-----CCCCcccccchhhhhcCCCHHHHHHH
Q 010813 30 ARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRLKPIDVLCKHLSG-----SDDLDIEINEPYMVFKGLTVKEMEEL 104 (500)
Q Consensus 30 ~R~re~~~~~ew~~kEd~F~L~Qak~Rs~IRi~egRaKPID~La~~l~~-----~~~~dv~l~eP~~i~~gL~~~dleeL 104 (500)
||++++++|++|++||++|||+||++||.|||++|||||||+||+||++ .++++++|++||+||+|||++||++|
T Consensus 1 qR~~e~~~~~ew~~kE~~F~L~Qak~rs~iRi~egRaKpID~La~~l~~~~~~~~~~~~~~~~eP~~i~~gL~~~dleeL 80 (191)
T PF10312_consen 1 QREREAEQFEEWEAKEEEFHLEQAKKRSEIRIREGRAKPIDLLAKNLRIIDGEREDDLEIELHEPYTIFEGLSLEDLEEL 80 (191)
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHhhccccccccccCcccCHHHHHhhCCHHHHHHH
Confidence 6899999999999999999999999999999999999999999999998 46788999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhhhhhhccchhHHHHHHHhcCCCCHH
Q 010813 105 RDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHK 184 (500)
Q Consensus 105 ~~DIk~y~~Le~~~~~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~~~~~gIh~sV~~DI~~il~gKS~~ 184 (500)
.+||++|++||+++ .|.+||++|++||+++|.++++.++.. .+.+.|||+||.+||++||+|||++
T Consensus 81 ~~dIk~y~~Le~~~-~n~~fW~~~~~v~~del~~~~~~~~~~-------------~~~~~~ih~sV~~dI~~il~gKs~~ 146 (191)
T PF10312_consen 81 LEDIKVYLELERDN-KNREFWEAMLVVCEDELAKLRKKEPEG-------------RAVRSGIHSSVAADIQKILSGKSYE 146 (191)
T ss_pred HHHHHHHHHHcccc-cHHHHHHHHHHHHHHHHHHhhcccccc-------------cchhhcccHHHHHHHHHHHccCCHH
Confidence 99999999999964 499999999999999999987643211 1135899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010813 185 ELEALQTKIELQMRAGTAKVVEYWEAILKRLHIYKAKACLKEIHA 229 (500)
Q Consensus 185 eL~~Le~qI~~KL~sg~~~Dv~YWE~lLk~L~v~kAka~Lr~~h~ 229 (500)
||.+||.||++||+||+++||+|||+||++|+||||||+|+++|+
T Consensus 147 eL~~Le~qI~~KL~s~~~~Dv~YWE~lL~~L~v~kAka~L~~~h~ 191 (191)
T PF10312_consen 147 ELEELEQQIKAKLRSGEAIDVEYWESLLKQLKVFKAKARLREIHQ 191 (191)
T ss_pred HHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999995
No 4
>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=99.73 E-value=1.7e-18 Score=163.74 Aligned_cols=79 Identities=28% Similarity=0.432 Sum_probs=73.8
Q ss_pred cceeEEEEEecCCCCCCCCCCcEEEeecC------CCCCeEEEEEecCCCCcceeeeeeccccccccCCccceeec--cc
Q 010813 414 IVQGYKFNIFYPDLVDKTKAPTYTIEKDG------SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFE--RG 485 (500)
Q Consensus 414 vvqGy~FnifYP~l~D~~~~P~~~i~~~~------~~~~~~~l~f~ag~PYediaFkI~n~ew~~~~~~gf~~~fd--~~ 485 (500)
-++|+.|+|-||++. .+..|+||+|+++ ++..|+||+| |++|||+|||+||++|+|.|.++ ||++|| +|
T Consensus 128 gq~~L~fQv~Yp~i~-~~~~Pr~rfmssyeq~ve~~dk~~qyLvf-aaePyE~Iafk~p~~Eid~se~K-f~t~wd~~tk 204 (222)
T KOG0227|consen 128 GQQGLLFQVNYPEIE-EGIMPRHRFMSSYEQKVEPPDKSWQYLVF-AAEPYENIAFKVPSREIDKSEGK-FWTHWDAETK 204 (222)
T ss_pred CceeeEEEecchhhh-hccCCcchhhhhhHhhcCCccccceEEEE-EeccccceeeecCchhhhhccCc-eeeeecCCCc
Confidence 369999999999998 5678999999986 6789999999 99999999999999999999998 999999 89
Q ss_pred eEEEEEEeec
Q 010813 486 ILHVYFNFKR 495 (500)
Q Consensus 486 ~~~l~f~Fkr 495 (500)
.|+|||+|+.
T Consensus 205 ~y~lqF~fk~ 214 (222)
T KOG0227|consen 205 QYTLQFFFKQ 214 (222)
T ss_pred eEEEEEEecc
Confidence 9999999985
No 5
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=99.37 E-value=5.3e-13 Score=125.98 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=65.8
Q ss_pred eeEEEEEecCCCCCCCCCCcEEEeecC------CCCCeEEEEEecCCCCcceeeeeeccccccccCCccceeec--cceE
Q 010813 416 QGYKFNIFYPDLVDKTKAPTYTIEKDG------SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHKKGFKCTFE--RGIL 487 (500)
Q Consensus 416 qGy~FnifYP~l~D~~~~P~~~i~~~~------~~~~~~~l~f~ag~PYediaFkI~n~ew~~~~~~gf~~~fd--~~~~ 487 (500)
-|+-|+|-|||+. ....|+||||+.. ++..|+||+| |++|||.|||+|+++|++++.. ..+|| +|.|
T Consensus 136 ~Gl~iqvnY~Dd~-a~~~P~yRivs~lEq~ve~~d~~f~yLV~-a~ePyEnIafk~~~~ei~f~s~---~~~wDa~~~tY 210 (222)
T COG5246 136 RGLGIQVNYEDDL-AEEMPQYRIVSSLEQNVEEYDESFRYLVF-ACEPYENIAFKFENKEIDFLSI---YEDWDAETGTY 210 (222)
T ss_pred eeeEEEEeccchh-hccCcceehhhhhhhcchhhcccceEEEE-EeccccceeeecCCCccchhhh---cccccccCceE
Confidence 5999999999986 5788999999985 5678999999 9999999999999999887642 25899 8999
Q ss_pred EEEEEeec
Q 010813 488 HVYFNFKR 495 (500)
Q Consensus 488 ~l~f~Fkr 495 (500)
+|||+|+-
T Consensus 211 t~qFff~~ 218 (222)
T COG5246 211 TLQFFFLE 218 (222)
T ss_pred EEEEeeec
Confidence 99999973
No 6
>KOG2370 consensus Cactin [Signal transduction mechanisms]
Probab=93.30 E-value=1.5 Score=47.99 Aligned_cols=130 Identities=22% Similarity=0.309 Sum_probs=81.3
Q ss_pred HHhhhhhhhhhhhhhhhhhhhcCCCch----hhHHhhhccCCCCCcccccchhhhhcCCCHHHHHHHHHHHHHHHhhhcC
Q 010813 42 EKKEEEFHFDQSKVRSEIRLREGRLKP----IDVLCKHLSGSDDLDIEINEPYMVFKGLTVKEMEELRDDIKMYLDLDRA 117 (500)
Q Consensus 42 ~~kEd~F~L~Qak~Rs~IRi~egRaKP----ID~La~~l~~~~~~dv~l~eP~~i~~gL~~~dleeL~~DIk~y~~Le~~ 117 (500)
..+|++|.+.|--.++.|++++-+.|| +|-|..-|++.++-.-. + +|+ +.|+..-
T Consensus 147 a~~Ede~mmlqrar~aa~qf~d~~~keFh~dq~KlrseIrl~~Grak~-------i---------dll---~~~~dfg-- 205 (623)
T KOG2370|consen 147 AMQEDEFMMLQRARRAAIQFKDWRSKEFHFDQDKLRSEIRLRPGRAKP-------I---------DLL---KNYIDFG-- 205 (623)
T ss_pred HhhhHHHHHHHHHHHHhhhhcccccccchhhhHhhhheeeecCCccch-------h---------hHH---Hhhhccc--
Confidence 568999999999999999999999999 66666655554432110 0 111 1222111
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhhhhhhccchhHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Q 010813 118 TPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDGKTHKELEALQTKIELQM 197 (500)
Q Consensus 118 ~~~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~~~~~gIh~sV~~DI~~il~gKS~~eL~~Le~qI~~KL 197 (500)
+ . | +-+| .+=-.+|+|++.++|++|-..|+.=.
T Consensus 206 ---d-----e---l-dmel-----------------------------------~eP~~vlkg~~vedlEel~~dIk~y~ 238 (623)
T KOG2370|consen 206 ---D-----E---L-DMEL-----------------------------------SEPYSVLKGLKVEDLEELSRDIKDYQ 238 (623)
T ss_pred ---c-----h---h-hhhc-----------------------------------cChHHHHccCCHhHHHHHHHHHHHHH
Confidence 0 0 0 1111 11236789999999999999998766
Q ss_pred h-cCCCccHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHh
Q 010813 198 R-AGTAKVVEYWEAILKRLHIYKAKACLK------EIHAKMLRKHLQRL 239 (500)
Q Consensus 198 ~-sg~~~Dv~YWE~lLk~L~v~kAka~Lr------~~h~~~l~~~l~~l 239 (500)
. .+.+-.+.||..|.--.---+++++.- .+|+.|-...-..|
T Consensus 239 ele~~~kr~tyW~~v~~iv~delq~~~~aqnsRgd~~haave~dv~~il 287 (623)
T KOG2370|consen 239 ELETNQKRLTYWKDVIMIVNDELQHNKVAQNSRGDKLHAAVEVDVRKIL 287 (623)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHHHhhhhccccceehhhhhhHHHHh
Confidence 5 346788999999876655555555222 25766655443333
No 7
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=85.02 E-value=2.1 Score=41.82 Aligned_cols=48 Identities=25% Similarity=0.391 Sum_probs=35.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHH
Q 010813 173 DVRNLLDGKTHKELEALQTKIELQMR-AGTAKVVEYWEAILKRLHIYKA 220 (500)
Q Consensus 173 DI~~il~gKS~~eL~~Le~qI~~KL~-sg~~~Dv~YWE~lLk~L~v~kA 220 (500)
+=-.+|.|-|.++|++|...|+.-+. .+.+...+||++++--..-..+
T Consensus 64 eP~~i~~gL~~~dleeL~~dIk~y~~Le~~~~n~~fW~~~~~v~~del~ 112 (191)
T PF10312_consen 64 EPYTIFEGLSLEDLEELLEDIKVYLELERDNKNREFWEAMLVVCEDELA 112 (191)
T ss_pred CHHHHHhhCCHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 33489999999999999999988775 2233388999998754443333
No 8
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=49.99 E-value=22 Score=29.33 Aligned_cols=13 Identities=31% Similarity=0.820 Sum_probs=10.8
Q ss_pred CCccHHHHHHHHH
Q 010813 201 TAKVVEYWEAILK 213 (500)
Q Consensus 201 ~~~Dv~YWE~lLk 213 (500)
+..|.+||+.||+
T Consensus 20 ~~~~~~yWe~LLr 32 (66)
T PF06465_consen 20 ESTDPNYWEKLLR 32 (66)
T ss_pred cccchHHHHHHHH
Confidence 4579999999993
No 9
>KOG2435 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.15 E-value=86 Score=32.58 Aligned_cols=94 Identities=24% Similarity=0.444 Sum_probs=59.4
Q ss_pred CCCCCCcccccccccccccccccccCCCCCCCccc---ceeEEEEEecCCCCCCCCCCcEEEeecCCCCCeEEEEEecCC
Q 010813 380 YRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKI---VQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGP 456 (500)
Q Consensus 380 YRPRKPrYFNRV~TGyEWNKYNQTHYD~DNPPPKv---vqGy~FnifYP~l~D~~~~P~~~i~~~~~~~~~~~l~f~ag~ 456 (500)
-|||| =||| +|-|+|..||---- || =.+|+.||+=|.-- - -.++ .-|++.+|.-|=
T Consensus 184 s~~Rk--aF~r-k~~~dw~qfn~L~L-------rvRGDGRsy~inihte~~~---------d-q~wn-dsys~flft~gG 242 (323)
T KOG2435|consen 184 SRPRK--AFER-KMSYDWSQFNTLYL-------RVRGDGRSYMINIHTETDF---------D-QRWN-DSYSYFLFTRGG 242 (323)
T ss_pred ccchh--hhcc-eecccccccceEEE-------EEecCCceEEEEecCccch---------h-hhcc-cceeeEEecCCC
Confidence 34665 5999 99999999995321 11 14688888654332 2 1233 459999999999
Q ss_pred CCccee---e---------eeeccccccccCCccceee---c--cceEEEEEEee
Q 010813 457 PYEDIA---F---------KIVNKEWEYSHKKGFKCTF---E--RGILHVYFNFK 494 (500)
Q Consensus 457 PYedia---F---------kI~n~ew~~~~~~gf~~~f---d--~~~~~l~f~Fk 494 (500)
||=+++ | +|.+++.+.+..+=---.| | -|-|.|-+-|-
T Consensus 243 p~wq~~KIPfSKff~t~kGriqDrq~e~nl~~vssig~sl~dk~dGpF~LEIDfI 297 (323)
T KOG2435|consen 243 PYWQEVKIPFSKFFFTNKGRIQDRQHELNLDKVSSIGFSLADKVDGPFFLEIDFI 297 (323)
T ss_pred CceeEEecchhhheeccccceeecccccCccceeeEeEEEeeccCCcceeeEEEE
Confidence 997765 2 6888887766654111111 1 46666666553
No 10
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=33.20 E-value=78 Score=32.17 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=14.1
Q ss_pred hHHHHHHHHhHHHHHHHHHh
Q 010813 2 QAEIEKVKKRREERALEKAR 21 (500)
Q Consensus 2 ~~EiEkvkkrR~eRE~E~~~ 21 (500)
++||+|+|+-|++..+.+++
T Consensus 152 l~ELekIKkER~ee~~~~e~ 171 (244)
T PF04889_consen 152 LRELEKIKKERAEEKARKEE 171 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 68999988877766554443
No 11
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=26.42 E-value=1.6e+02 Score=23.67 Aligned_cols=45 Identities=22% Similarity=0.607 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCcccceeEEEEEecCCCCCCCCCCcEEEeecCCCCC
Q 010813 393 TGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGE 446 (500)
Q Consensus 393 TGyEWNKYNQTHYD~DNPPPKvvqGy~FnifYP~l~D~~~~P~~~i~~~~~~~~ 446 (500)
-||-|-||.|-+-. .||-|. +| |.--+ +.+...+=.|..+.+++.
T Consensus 3 DGy~WRKYGQK~ik-gs~~pR---sY-YrCt~----~~~C~a~K~Vq~~~~d~~ 47 (59)
T smart00774 3 DGYQWRKYGQKVIK-GSPFPR---SY-YRCTY----SQGCPAKKQVQRSDDDPS 47 (59)
T ss_pred CcccccccCcEecC-CCcCcc---eE-Eeccc----cCCCCCcccEEEECCCCC
Confidence 49999999999887 667774 34 44444 234444555666654443
No 12
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=25.91 E-value=71 Score=30.34 Aligned_cols=40 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred CchhhHHhhhccCCCCCcccccchhhhh-c-CCCHHHHHHHHHHHHHH
Q 010813 66 LKPIDVLCKHLSGSDDLDIEINEPYMVF-K-GLTVKEMEELRDDIKMY 111 (500)
Q Consensus 66 aKPID~La~~l~~~~~~dv~l~eP~~i~-~-gL~~~dleeL~~DIk~y 111 (500)
..|||+|+.+=. |.+.+-+..+ . -+|.+++.+|.+||+|.
T Consensus 34 ~dpi~~L~~~~~------i~fdd~~~~i~~h~~TT~EIk~~c~DLKVL 75 (159)
T PF11861_consen 34 EDPIDLLGSANE------IVFDDASKEILKHPLTTEEIKECCKDLKVL 75 (159)
T ss_pred CcHHHHHHHcCe------eeecchHHHHHcCCCCcHHHHHHHHHHHhc
Confidence 379999988532 2223322222 2 37899999999999996
No 13
>TIGR01994 SUF_scaf_2 SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred.
Probab=25.62 E-value=1.4e+02 Score=27.31 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=35.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCCc-cHHHHHH--HHHHHHHHHHHH
Q 010813 173 DVRNLLDGKTHKELEALQTKIELQMRAGTAK-VVEYWEA--ILKRLHIYKAKA 222 (500)
Q Consensus 173 DI~~il~gKS~~eL~~Le~qI~~KL~sg~~~-Dv~YWE~--lLk~L~v~kAka 222 (500)
=+..++.|||.+|+..|-..+.+.|.+++.. +.+=|.. +|.-++-|.+|-
T Consensus 70 ~~~e~i~Gk~~~ea~~l~~~~~~ml~~~~~~~~~~~l~dl~~l~~v~~~p~R~ 122 (137)
T TIGR01994 70 MMTELIKGKTVEEALSLVEAFSEMIQGQETDEDEEKLGDAEALAGVAKFPARI 122 (137)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCccccccchHHHhhccccCcchH
Confidence 3467899999999999999999999877543 2334653 444444455553
No 14
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.58 E-value=1.3e+03 Score=28.04 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcc-------HHHHHHHHHHHHHHHH-HHHHHHH
Q 010813 183 HKELEALQTKIELQMRAGTAKV-------VEYWEAILKRLHIYKA-KACLKEI 227 (500)
Q Consensus 183 ~~eL~~Le~qI~~KL~sg~~~D-------v~YWE~lLk~L~v~kA-ka~Lr~~ 227 (500)
-++|++|++.+..||..-+..+ .+|--.+|..=..|++ +-.|++.
T Consensus 548 kdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~ 600 (1118)
T KOG1029|consen 548 KDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEA 600 (1118)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999996422222 4455566666667773 3444433
No 15
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.16 E-value=87 Score=30.63 Aligned_cols=31 Identities=19% Similarity=0.396 Sum_probs=25.0
Q ss_pred hhHHHHHHHhcCCCCHHHH---HHHHHHHHHHHh
Q 010813 168 SSIEADVRNLLDGKTHKEL---EALQTKIELQMR 198 (500)
Q Consensus 168 ~sV~~DI~~il~gKS~~eL---~~Le~qI~~KL~ 198 (500)
+.|..-|..+|++||+++| ..|+.+|..+|+
T Consensus 127 pqIRD~Ii~~LssKt~~eL~Gk~~LKeEI~~rIN 160 (181)
T PRK06654 127 VRLKDIIREYFSQKTGQELKNESQIKAEIKARIN 160 (181)
T ss_pred HHHHHHHHHHHHhCCHHHHcCHHHHHHHHHHHHH
Confidence 3577889999999999999 667777777765
No 16
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.15 E-value=1.4e+02 Score=23.92 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=25.6
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010813 206 EYWEAILK-----RLHIYKAKACLKEIHAKMLRKHLQRLE 240 (500)
Q Consensus 206 ~YWE~lLk-----~L~v~kAka~Lr~~h~~~l~~~l~~l~ 240 (500)
+||+.+.. .+++|.|=-.--+.|..+|..|...+.
T Consensus 1 eyW~~~~~vip~~~~~~W~~L~~~l~rY~~vL~~R~~l~~ 40 (60)
T PF14775_consen 1 EYWERLANVIPDEKIRLWDALENFLKRYNKVLLDRAALIQ 40 (60)
T ss_pred CHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888764 667888877777777788888876654
No 17
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=23.49 E-value=1.2e+02 Score=24.07 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=19.2
Q ss_pred HHHhHHHHHHHHHhhHHH----HHHHHHHHH
Q 010813 8 VKKRREERALEKARHEEE----MALLARERA 34 (500)
Q Consensus 8 vkkrR~eRE~E~~~~Eee----~~~l~R~re 34 (500)
|+--++||+.+++..|.| |+||+++|+
T Consensus 20 v~t~~eE~~~dq~~IEkEGevymeR~e~ere 50 (52)
T PF14147_consen 20 VKTAKEEREIDQEFIEKEGEVYMERMEEERE 50 (52)
T ss_pred HHHHHHHHHhHHHHHHHhHHHHHHHHHHHhc
Confidence 566778888888777765 666666665
No 18
>PF05851 Lentivirus_VIF: Lentivirus virion infectivity factor (VIF); InterPro: IPR008668 This family consists of several feline-specific Lentivirus virion infectivity factor (VIF) proteins. VIF is essential for productive Feline immunodeficiency virus infection of host target cells in vitro [].; GO: 0019058 viral infectious cycle
Probab=22.60 E-value=37 Score=34.17 Aligned_cols=11 Identities=45% Similarity=1.117 Sum_probs=9.4
Q ss_pred ccccccccCCC
Q 010813 372 QVYWWHDKYRP 382 (500)
Q Consensus 372 ~~y~W~dKYRP 382 (500)
..++|+.+|||
T Consensus 98 S~PlW~~~YRP 108 (251)
T PF05851_consen 98 SNPLWHRRYRP 108 (251)
T ss_pred cChhhhhccCC
Confidence 35789999999
No 19
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=21.71 E-value=2.8e+02 Score=26.30 Aligned_cols=48 Identities=33% Similarity=0.567 Sum_probs=32.5
Q ss_pred ChHHHHHHHHhHHHHHHHHHhhHHH------HHHHHHHHHHHHhhhHHHhhhhh
Q 010813 1 MQAEIEKVKKRREERALEKARHEEE------MALLARERARAEFQDWEKKEEEF 48 (500)
Q Consensus 1 ~~~EiEkvkkrR~eRE~E~~~~Eee------~~~l~R~re~~~~~ew~~kEd~F 48 (500)
|+..|-+||+.|.+|..-.-.+.+. ...-+.+.+...|..|...|+.=
T Consensus 1 Mi~~Ll~IK~~R~drAe~a~~~q~~~l~~a~~~~~~a~~~l~dyr~wr~~ee~r 54 (152)
T PF07321_consen 1 MISRLLRIKHLREDRAERALRRQERRLQEARAALQQAEQELADYRQWRQREEER 54 (152)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999988887543333322 22335556778999998888763
Done!