Query 010813
Match_columns 500
No_of_seqs 139 out of 234
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:48:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 99.8 9.2E-19 3.2E-23 165.6 7.7 82 413-495 113-223 (231)
2 1xjs_A NIFU-like protein; SR17 27.8 32 0.0011 30.7 2.7 53 173-225 75-129 (147)
3 1su0_B NIFU like protein ISCU; 22.6 71 0.0024 28.9 4.0 63 174-236 75-139 (159)
4 3bpj_A Eukaryotic translation 20.7 2.8E+02 0.0095 22.2 6.8 56 176-231 6-63 (80)
5 3twe_A Alpha4H; unknown functi 14.9 73 0.0025 20.5 1.5 18 183-200 7-27 (27)
6 3u43_A Colicin-E2 immunity pro 14.1 2.6E+02 0.0087 23.4 5.1 49 174-222 19-78 (94)
7 2qq4_A Iron-sulfur cluster bio 11.4 1.2E+02 0.004 26.7 2.4 29 173-201 73-101 (138)
8 1fr2_A Colicin E9 immunity pro 10.0 4.2E+02 0.014 21.7 5.1 52 171-222 16-78 (86)
9 2lw9_A Unconventionnal myosin- 9.7 3.6E+02 0.012 20.1 4.0 7 28-34 36-42 (51)
10 3eud_A Protein SHQ1; CS domain 9.4 4.8E+02 0.016 22.6 5.4 23 429-454 13-35 (115)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=99.75 E-value=9.2e-19 Score=165.62 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=67.0
Q ss_pred ccceeEEEEEecCC-C----C----CCCCCCcEEEeecC-----CCCCeEEEEEecCCCCcceeeeeeccccccccC---
Q 010813 413 KIVQGYKFNIFYPD-L----V----DKTKAPTYTIEKDG-----SNGETCIIRFHAGPPYEDIAFKIVNKEWEYSHK--- 475 (500)
Q Consensus 413 KvvqGy~FnifYP~-l----~----D~~~~P~~~i~~~~-----~~~~~~~l~f~ag~PYediaFkI~n~ew~~~~~--- 475 (500)
.-++|+.|+|.||+ + + +.+..|+|||||++ +.+++|||+| |++|||+|||+|||+|++.+.+
T Consensus 113 TgQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~PKd~QYLVI-AAEPYETIAFKIPNrEIDk~e~~~~ 191 (231)
T 4dgw_C 113 XGSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI-AYEPFENIAIELPPNEILFSENNDM 191 (231)
T ss_dssp CCBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCCCCCEEEEE-ECSSSCCBCCEECSSCSSCCSCCSC
T ss_pred CCCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCCCCCEEEEE-EeCCCCCceeEcCChhhcccccccc
Confidence 34899999999999 4 1 35678999999996 3478999999 9999999999999999999872
Q ss_pred ----------Cccceeec--cceEEEEEEeec
Q 010813 476 ----------KGFKCTFE--RGILHVYFNFKR 495 (500)
Q Consensus 476 ----------~gf~~~fd--~~~~~l~f~Fkr 495 (500)
..||++|| +|.|.|||+||+
T Consensus 192 ~~~~~svDElgKfwTyWD~DsK~FyLQffFK~ 223 (231)
T 4dgw_C 192 DNNNDGVDELNKKCTFWDAISKLYYVQFFFKQ 223 (231)
T ss_dssp CCCCCSSCHHHHHTEEEETTTTEEEEC-----
T ss_pred ccccccccccCCEEEEecCCCCEEEEEEEEee
Confidence 22899999 899999999995
No 2
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=27.81 E-value=32 Score=30.75 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=36.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCCccHHHHHH--HHHHHHHHHHHHHHH
Q 010813 173 DVRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEA--ILKRLHIYKAKACLK 225 (500)
Q Consensus 173 DI~~il~gKS~~eL~~Le~qI~~KL~sg~~~Dv~YWE~--lLk~L~v~kAka~Lr 225 (500)
=+..++.|||.+|...|-....+.|.+++..+.+.|+. +|.-++.|.+|-..-
T Consensus 75 ~mte~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca 129 (147)
T 1xjs_A 75 MMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCA 129 (147)
T ss_dssp HHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHH
Confidence 35678999999999999999999998764333456664 344444444444333
No 3
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=22.58 E-value=71 Score=28.89 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCCccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010813 174 VRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEA--ILKRLHIYKAKACLKEIHAKMLRKHL 236 (500)
Q Consensus 174 I~~il~gKS~~eL~~Le~qI~~KL~sg~~~Dv~YWE~--lLk~L~v~kAka~Lr~~h~~~l~~~l 236 (500)
+..++.|||.+|...|-....+.|.+++..+.+.|+. +|.-++.|.+|-..--+--..|+.-|
T Consensus 75 mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al 139 (159)
T 1su0_B 75 MTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAI 139 (159)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHH
Confidence 5678999999999999999999888654333456654 34444444554444444333444433
No 4
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=20.67 E-value=2.8e+02 Score=22.23 Aligned_cols=56 Identities=9% Similarity=0.212 Sum_probs=44.4
Q ss_pred HhcCCCCHHHHHHHHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010813 176 NLLDGKTHKELEALQTKIELQMRA--GTAKVVEYWEAILKRLHIYKAKACLKEIHAKM 231 (500)
Q Consensus 176 ~il~gKS~~eL~~Le~qI~~KL~s--g~~~Dv~YWE~lLk~L~v~kAka~Lr~~h~~~ 231 (500)
..|.++|-+|..+|..-|..+|.+ +.+.=..|=+.|++.|-.-+--+-+|++-..+
T Consensus 6 ~~f~P~Tk~dF~~~~~~l~~kl~~~~ks~~y~~f~~~lir~l~~~L~~~dikkv~s~l 63 (80)
T 3bpj_A 6 DAMNPSSRDDFTEFGKLLKDKITQYEKSLYYASFLEVLVRDVCISLEIDDLKKITNSL 63 (80)
T ss_dssp TTCCCCSHHHHHHHHHHHHHHHGGGTTSTTHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 457899999999999999999974 44555888899998888777666777665544
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=14.91 E-value=73 Score=20.51 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=10.2
Q ss_pred HHHHHHHH---HHHHHHHhcC
Q 010813 183 HKELEALQ---TKIELQMRAG 200 (500)
Q Consensus 183 ~~eL~~Le---~qI~~KL~sg 200 (500)
|.+|+.|+ .+++.||+||
T Consensus 7 ykeledlqerlrklrkklrsg 27 (27)
T 3twe_A 7 YKELEDLQERLRKLRKKLRSG 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 34455554 4566788776
No 6
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=14.13 E-value=2.6e+02 Score=23.45 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.6
Q ss_pred HHHhcCC--CCHHHHHHHHHHHHHHHhcCCCccHHHH---------HHHHHHHHHHHHHH
Q 010813 174 VRNLLDG--KTHKELEALQTKIELQMRAGTAKVVEYW---------EAILKRLHIYKAKA 222 (500)
Q Consensus 174 I~~il~g--KS~~eL~~Le~qI~~KL~sg~~~Dv~YW---------E~lLk~L~v~kAka 222 (500)
|+.|+.+ .|-+++..|-.....=..-+.+.|.=|| |.|++.++-|+|..
T Consensus 19 v~~I~~~~~~~E~e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~n 78 (94)
T 3u43_A 19 VKKICRAEGATEEDDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAAN 78 (94)
T ss_dssp HHHHHHTCCSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHc
Confidence 4555544 4677777776666544444566788899 78999999999864
No 7
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=11.43 E-value=1.2e+02 Score=26.72 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 010813 173 DVRNLLDGKTHKELEALQTKIELQMRAGT 201 (500)
Q Consensus 173 DI~~il~gKS~~eL~~Le~qI~~KL~sg~ 201 (500)
=+..++.|||.+|...|-....+-|.+++
T Consensus 73 ~~te~i~Gkt~~ea~~i~~~~~~ml~~~~ 101 (138)
T 2qq4_A 73 LMTEAVKGKKVAEALELSRKFQAMVVEGA 101 (138)
T ss_dssp HHHHHHTTSBHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHhCCC
Confidence 35678999999999999999999888664
No 8
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=9.97 E-value=4.2e+02 Score=21.70 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHHHHHHHhcCCCccHHHHH---------HHHHHHHHHHHHH
Q 010813 171 EADVRNLLDGK--THKELEALQTKIELQMRAGTAKVVEYWE---------AILKRLHIYKAKA 222 (500)
Q Consensus 171 ~~DI~~il~gK--S~~eL~~Le~qI~~KL~sg~~~Dv~YWE---------~lLk~L~v~kAka 222 (500)
.+=|+.|+.+. |-++...|-.....=..-..+.|.=||- .|++.++-|+|+.
T Consensus 16 i~lv~~I~~~~~~~e~e~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~ 78 (86)
T 1fr2_A 16 LQLVTTICNADTSSEEELVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAAN 78 (86)
T ss_dssp HHHHHHHHTTCSSSHHHHHHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHc
Confidence 34456666665 6666666666655444445667888995 8999999999964
No 9
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=9.73 E-value=3.6e+02 Score=20.15 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 010813 28 LLARERA 34 (500)
Q Consensus 28 ~l~R~re 34 (500)
++++.|+
T Consensus 36 eL~~~RD 42 (51)
T 2lw9_A 36 KLQERRD 42 (51)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344443
No 10
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=9.37 E-value=4.8e+02 Score=22.60 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=15.6
Q ss_pred CCCCCCcEEEeecCCCCCeEEEEEec
Q 010813 429 DKTKAPTYTIEKDGSNGETCIIRFHA 454 (500)
Q Consensus 429 D~~~~P~~~i~~~~~~~~~~~l~f~a 454 (500)
|+-.+|+|.|.-+. +|.+|.+++
T Consensus 13 ~~~iTP~F~itQDd---efv~I~I~~ 35 (115)
T 3eud_A 13 DKMITPRFSITQDE---EFIFLKIFI 35 (115)
T ss_dssp -CCBCCCEEEEECS---SEEEEEEEC
T ss_pred CCEeCCcEEEEECC---CEEEEEEEc
Confidence 45678999998653 477776644
Done!