Query 010813
Match_columns 500
No_of_seqs 139 out of 234
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 14:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010813.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010813hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1su0b_ d.224.1.2 (B:) IscU ho 28.3 19 0.0014 29.4 3.3 48 174-221 70-119 (136)
2 d1sxjb2 c.37.1.20 (B:7-230) Re 25.1 6.5 0.00048 33.8 -0.3 10 376-385 5-14 (224)
3 d2fmpa1 a.60.6.1 (A:10-91) DNA 22.8 1E+02 0.0073 22.7 6.5 76 100-191 5-81 (82)
4 d1r9pa_ d.224.1.2 (A:) NifU-li 19.7 73 0.0053 25.7 5.5 55 166-221 65-124 (134)
5 d1sxja2 c.37.1.20 (A:295-547) 19.6 10 0.00073 32.7 -0.2 10 375-384 3-12 (253)
6 d1jmsa1 a.60.6.1 (A:148-242) T 19.3 73 0.0053 24.3 5.1 74 101-190 21-94 (95)
7 d1sxje2 c.37.1.20 (E:4-255) Re 19.0 15 0.0011 31.4 0.9 9 376-384 1-9 (252)
8 d1sxjc2 c.37.1.20 (C:12-238) R 18.4 11 0.00079 32.2 -0.3 14 376-392 4-17 (227)
9 d1sxjd2 c.37.1.20 (D:26-262) R 17.9 11 0.00082 32.0 -0.3 17 376-396 2-18 (237)
10 d1iqpa2 c.37.1.20 (A:2-232) Re 17.4 12 0.00088 32.0 -0.2 15 375-392 13-27 (231)
No 1
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=28.25 E-value=19 Score=29.43 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=34.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCCccHHHHHHH--HHHHHHHHHH
Q 010813 174 VRNLLDGKTHKELEALQTKIELQMRAGTAKVVEYWEAI--LKRLHIYKAK 221 (500)
Q Consensus 174 I~~il~gKS~~eL~~Le~qI~~KL~sg~~~Dv~YWE~l--Lk~L~v~kAk 221 (500)
+..++.|||.+++..|-..+.+.|.+++.....-|+.+ |.-++-|.+|
T Consensus 70 l~e~i~gk~~~e~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~v~~~p~R 119 (136)
T d1su0b_ 70 MTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQR 119 (136)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHhcccCCchhhhhHHHHhhCCCcCcch
Confidence 46789999999999999999999987665556667543 3333444444
No 2
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.05 E-value=6.5 Score=33.82 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=8.6
Q ss_pred ccccCCCCCC
Q 010813 376 WHDKYRPRKP 385 (500)
Q Consensus 376 W~dKYRPRKP 385 (500)
|.+||||++-
T Consensus 5 w~eKyrP~~~ 14 (224)
T d1sxjb2 5 WVEKYRPQVL 14 (224)
T ss_dssp HHHHTCCSSG
T ss_pred hHhHhCCCCH
Confidence 9999998764
No 3
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.76 E-value=1e+02 Score=22.71 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhhhcCCC-chHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhhhhhhccchhHHHHHHHhc
Q 010813 100 EMEELRDDIKMYLDLDRATP-THVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLL 178 (500)
Q Consensus 100 dleeL~~DIk~y~~Le~~~~-~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~~~~~gIh~sV~~DI~~il 178 (500)
++-++...+..+++.-..++ +-+.|.++..+|-... .+.........=.||-.++...|..++
T Consensus 5 ~i~~~L~ela~l~~~~~~~~fr~~AY~~Aa~~i~~l~----------------~~i~~~~~l~~i~GIGk~ia~kI~E~~ 68 (82)
T d2fmpa1 5 GITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYP----------------HKIKSGAEAKKLPGVGTKIAEKIDEFL 68 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCS----------------SCCCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCC----------------cccCCHHHHhcCCCccHHHHHHHHHHH
Confidence 44455555555554332221 2357888887765311 111111112233578889999999999
Q ss_pred CCCCHHHHHHHHH
Q 010813 179 DGKTHKELEALQT 191 (500)
Q Consensus 179 ~gKS~~eL~~Le~ 191 (500)
..-+..+|++|++
T Consensus 69 ~TG~~~~le~l~~ 81 (82)
T d2fmpa1 69 ATGKLRKLEKIRQ 81 (82)
T ss_dssp HHSSCHHHHHHHH
T ss_pred HhCChHHHHHHhc
Confidence 9889999998875
No 4
>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}
Probab=19.69 E-value=73 Score=25.66 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=33.7
Q ss_pred cchhHHHHHHHhcCCCCHHHHHHHH-HHHHHHHhcCCCccHHH----HHHHHHHHHHHHHH
Q 010813 166 LHSSIEADVRNLLDGKTHKELEALQ-TKIELQMRAGTAKVVEY----WEAILKRLHIYKAK 221 (500)
Q Consensus 166 Ih~sV~~DI~~il~gKS~~eL~~Le-~qI~~KL~sg~~~Dv~Y----WE~lLk~L~v~kAk 221 (500)
|..+.++=+..++.|||.++...|. ..|..-| +-.|.-+.. |.+|.+-|.-|.+|
T Consensus 65 is~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l-~~~p~r~~Ca~L~~~al~~al~~y~~k 124 (134)
T d1r9pa_ 65 SAIASSSLITEWVKGKSLEEAGAIKNSQIAEEL-ELPPVKVHCSILAEDAIKAAIADYKAK 124 (134)
T ss_dssp SHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHH-TCCSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhh-cCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3333344456789999999999995 4466665 344444443 66666555555443
No 5
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.56 E-value=10 Score=32.74 Aligned_cols=10 Identities=40% Similarity=0.963 Sum_probs=8.8
Q ss_pred cccccCCCCC
Q 010813 375 WWHDKYRPRK 384 (500)
Q Consensus 375 ~W~dKYRPRK 384 (500)
+|.|||||+.
T Consensus 3 lW~eky~P~~ 12 (253)
T d1sxja2 3 LWTVKYAPTN 12 (253)
T ss_dssp CHHHHTCCSS
T ss_pred ccccCcCCCC
Confidence 6999999875
No 6
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.34 E-value=73 Score=24.26 Aligned_cols=74 Identities=9% Similarity=0.058 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHHHHHHHHhhhHHhhhhhcCCCCchhhhhhhhccchhHHHHHHHhcCC
Q 010813 101 MEELRDDIKMYLDLDRATPTHVEYWEALMVVCDWELAEARKKDALDRARVRGEQPPAELLAEERGLHSSIEADVRNLLDG 180 (500)
Q Consensus 101 leeL~~DIk~y~~Le~~~~~n~~fW~~m~vic~deL~k~rk~e~~~~~~~~G~~~~~~~~~~~~gIh~sV~~DI~~il~g 180 (500)
+-+..+.+..++++..+.-.-..|.+++.+|-... .+-........=.||-.++..-|..|+.-
T Consensus 21 i~~~L~~la~~~e~~g~~fr~~AY~rAa~~i~~l~----------------~~i~~~~~l~~i~GIGk~i~~kI~Eil~t 84 (95)
T d1jmsa1 21 FTDALDILAENDELRENEGSCLAFMRASSVLKSLP----------------FPITSMKDTEGIPCLGDKVKSIIEGIIED 84 (95)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCS----------------SCCCSGGGGTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC----------------cccCCHHHHHhccchhHHHHHHHHHHHHH
Confidence 33444444555566542112346777776665321 11111111223357888999999999998
Q ss_pred CCHHHHHHHH
Q 010813 181 KTHKELEALQ 190 (500)
Q Consensus 181 KS~~eL~~Le 190 (500)
-+.++|++|.
T Consensus 85 G~~~~lE~l~ 94 (95)
T d1jmsa1 85 GESSEAKAVL 94 (95)
T ss_dssp SSCHHHHHHH
T ss_pred CCcHHHHHhh
Confidence 8889998875
No 7
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.02 E-value=15 Score=31.42 Aligned_cols=9 Identities=67% Similarity=1.590 Sum_probs=8.4
Q ss_pred ccccCCCCC
Q 010813 376 WHDKYRPRK 384 (500)
Q Consensus 376 W~dKYRPRK 384 (500)
|.+||||++
T Consensus 1 W~eky~P~~ 9 (252)
T d1sxje2 1 WVDKYRPKS 9 (252)
T ss_dssp CTTTTCCCS
T ss_pred CCcccCCCC
Confidence 999999997
No 8
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.41 E-value=11 Score=32.17 Aligned_cols=14 Identities=43% Similarity=1.011 Sum_probs=10.5
Q ss_pred ccccCCCCCCccccccc
Q 010813 376 WHDKYRPRKPKYFNRVH 392 (500)
Q Consensus 376 W~dKYRPRKPrYFNRV~ 392 (500)
|.+||||+ .|+-|.
T Consensus 4 w~ekyrP~---~~~div 17 (227)
T d1sxjc2 4 WVEKYRPE---TLDEVY 17 (227)
T ss_dssp HHHHTCCS---SGGGCC
T ss_pred hhhhhCCC---CHHHcc
Confidence 99999774 666654
No 9
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.90 E-value=11 Score=31.97 Aligned_cols=17 Identities=35% Similarity=0.954 Sum_probs=11.9
Q ss_pred ccccCCCCCCccccccccccc
Q 010813 376 WHDKYRPRKPKYFNRVHTGYE 396 (500)
Q Consensus 376 W~dKYRPRKPrYFNRV~TGyE 396 (500)
|.|||||+ .|+-|- |.+
T Consensus 2 w~~ky~P~---~~~dii-g~~ 18 (237)
T d1sxjd2 2 WVEKYRPK---NLDEVT-AQD 18 (237)
T ss_dssp HHHHTCCS---STTTCC-SCC
T ss_pred cchhhCCC---CHHHcc-CcH
Confidence 99999875 466653 544
No 10
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=17.40 E-value=12 Score=32.02 Aligned_cols=15 Identities=33% Similarity=0.942 Sum_probs=11.2
Q ss_pred cccccCCCCCCccccccc
Q 010813 375 WWHDKYRPRKPKYFNRVH 392 (500)
Q Consensus 375 ~W~dKYRPRKPrYFNRV~ 392 (500)
.|.|||||+. |.-|-
T Consensus 13 ~w~~ky~P~~---~~dii 27 (231)
T d1iqpa2 13 PWVEKYRPQR---LDDIV 27 (231)
T ss_dssp CHHHHTCCCS---TTTCC
T ss_pred hHHHHhCCCC---HHHcc
Confidence 3999999874 66554
Done!