Query 010814
Match_columns 500
No_of_seqs 194 out of 252
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 04:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10269 Tmemb_185A: Transmemb 100.0 1.5E-45 3.2E-50 359.1 13.1 232 28-291 1-238 (238)
2 KOG3879 Predicted membrane pro 100.0 6.5E-37 1.4E-41 296.0 11.1 188 80-336 9-201 (267)
3 KOG3879 Predicted membrane pro 99.8 1.1E-19 2.4E-24 176.8 6.9 129 8-159 55-195 (267)
4 PF10269 Tmemb_185A: Transmemb 99.5 2.3E-13 5E-18 133.5 10.8 171 12-189 48-237 (238)
5 KOG1100 Predicted E3 ubiquitin 86.3 0.25 5.4E-06 48.6 0.4 118 282-417 42-160 (207)
6 PF14995 TMEM107: Transmembran 65.4 7.1 0.00015 35.8 3.5 41 402-442 33-73 (124)
7 PTZ00453 cyclin-dependent kina 50.4 10 0.00022 33.7 1.8 51 344-398 7-71 (96)
8 PLN00010 cyclin-dependent kina 49.9 8.5 0.00018 33.6 1.2 26 370-398 21-47 (86)
9 PF12107 VEK-30: Plasminogen ( 48.1 6.2 0.00013 24.9 0.1 10 407-416 3-12 (17)
10 PF10109 FluMu_gp41: Mu-like p 45.2 25 0.00053 28.5 3.2 28 365-392 51-78 (82)
11 PF13282 DUF4070: Domain of un 44.0 21 0.00044 33.4 2.8 41 352-395 8-48 (146)
12 TIGR03164 UHCUDC OHCU decarbox 37.4 18 0.0004 34.2 1.4 58 346-404 85-152 (157)
13 PF14147 Spore_YhaL: Sporulati 36.4 29 0.00062 27.9 2.1 21 286-306 1-22 (52)
14 COG3195 Uncharacterized protei 34.4 39 0.00084 33.1 3.1 53 346-413 57-110 (176)
15 PF12711 Kinesin-relat_1: Kine 33.1 31 0.00067 30.2 2.0 34 381-414 26-65 (86)
16 PRK13798 putative OHCU decarbo 32.9 23 0.00051 33.9 1.4 59 345-404 89-157 (166)
17 TIGR03180 UraD_2 OHCU decarbox 31.8 25 0.00054 33.4 1.4 59 345-404 84-152 (158)
18 PF01111 CKS: Cyclin-dependent 29.5 32 0.00069 29.1 1.5 25 371-398 20-45 (70)
19 PF07216 LcrG: LcrG protein; 29.0 35 0.00076 30.3 1.7 36 363-399 41-76 (93)
20 KOG0894 Ubiquitin-protein liga 28.3 25 0.00054 35.6 0.8 65 352-421 129-199 (244)
21 PF12650 DUF3784: Domain of un 26.5 55 0.0012 28.0 2.5 25 363-390 24-48 (97)
22 PHA02755 hypothetical protein; 23.6 92 0.002 27.3 3.2 39 373-411 15-53 (96)
23 PTZ00471 60S ribosomal protein 22.9 35 0.00076 32.1 0.7 37 344-386 27-64 (134)
24 PF10224 DUF2205: Predicted co 22.9 74 0.0016 27.4 2.5 37 379-415 16-52 (80)
25 PF09349 OHCU_decarbox: OHCU d 21.0 43 0.00094 31.5 0.9 58 346-404 88-155 (159)
No 1
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=100.00 E-value=1.5e-45 Score=359.09 Aligned_cols=232 Identities=49% Similarity=0.810 Sum_probs=194.2
Q ss_pred HhcCCccccchhHHHHHHHHHHHHHHhhcccCCCCCCCCcccccchhhHHHHHHHHHHHHHHHHHhccccccccccccee
Q 010814 28 LKLDHVISYSWWIVFFPVWIFHAVVARGRFSLPAPSVPHNRHWAPCHAIVATPLLIAFELLLCIYLESIYEHGFEAVNLK 107 (500)
Q Consensus 28 LKLDg~I~WSWwvVFiPLWI~d~lv~rg~f~~~~~~~~~rr~wa~~~smv~llLLL~FelLLC~KLEg~~~~~~~~l~w~ 107 (500)
||+||.++||||.||+|+|++|+++++|..........+++.++.+++....+++++||+|+|.||++... .+|.
T Consensus 1 LrlD~~i~wsww~VF~Plw~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~lll~~f~~llc~~L~~~~~-----~~w~ 75 (238)
T PF10269_consen 1 LRLDGVISWSWWIVFIPLWIWKAIVIVGAFVGIAVSRPRVDFKAMLISVVAHLLLLAFELLLCIKLEGGSS-----ISWS 75 (238)
T ss_pred CccCceeeccHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCc-----ceee
Confidence 69999999999999999999999999988665544445566666677777778899999999999965555 7999
Q ss_pred eehhhHHHHHH---HHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccceeehh
Q 010814 108 IVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAISMVFFVAATVFTLLKLCGYVGALGWWDLF 184 (500)
Q Consensus 108 iVFiPL~iLli---~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaIsmlfll~f~IfLaLKLDg~~i~wsWwvVF 184 (500)
.||+|+|++.. ..+++++|+ |||+++++++++.+.+.++++..++++++++|++|++|||||. ++||||+||
T Consensus 76 ~VFiPL~~l~~~~I~~~i~~~r~----~~~~~e~~~~~~~~~~~~~~~~~l~~if~~~f~v~l~Lkld~~-i~~sW~~vF 150 (238)
T PF10269_consen 76 IVFIPLFVLSALSILICIWNFRH----MPGDGEEMSDRSIWFELPFFWNILSLIFFLAFTVFLALKLDGV-IDWSWWIVF 150 (238)
T ss_pred eeeechhhHHHHHHHHHHHhhcc----CcccccCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCc-ccccHHHHH
Confidence 99999987764 778899888 8999999999999999999999999999999999999999999 999999999
Q ss_pred hHHHHHHHHHHhhccccCCCcccCCCCCCCCCCccchhhhhcccccccccccccCCCccchhh-hhhh--HHhHHHHHHH
Q 010814 185 INFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEEEQNPDGMCGLS-DIGG--HIMKVPVIGF 261 (500)
Q Consensus 185 IPLwI~d~fa~Lvc~~~~np~i~~~~~~~~~sss~vl~y~~w~~gl~vrs~e~~~~qrr~~l~-~i~~--~lL~IpllvF 261 (500)
+|+|++||+++++|... ....+++.+++++. ..+||+.+.+ ++++ +++++|+++|
T Consensus 151 iPl~i~~~~~~~~~~~~---------------~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~l~F 208 (238)
T PF10269_consen 151 IPLWIADGLAFLVCLYS---------------IIMSIRYLDRNPGL-------LPSQRRSSLQSRICWGGLFLVIPLLVF 208 (238)
T ss_pred HHHHHHHHHHHHHHHHH---------------HHHHHHHHhccCCC-------chhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999874221 01133445554333 3445555555 6766 8899999999
Q ss_pred HHHHHHhhcCCCCCCcCccchhhhHHHHHH
Q 010814 262 QVLLCMHLEGTPAGARNIALPVLFSPLFLL 291 (500)
Q Consensus 262 qILLc~KLeg~p~~~~~i~~~~VFiPLfIL 291 (500)
|++||+||||++..++++|+.+||+|+|++
T Consensus 209 ~vLL~~kLe~~~~~~~~~~~~~vf~PL~i~ 238 (238)
T PF10269_consen 209 QVLLCMKLEGTPWSAANIPISVVFIPLFIL 238 (238)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHhC
Confidence 999999999987777799999999999974
No 2
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=6.5e-37 Score=295.96 Aligned_cols=188 Identities=27% Similarity=0.444 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHH---HHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHHH
Q 010814 80 PLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEI---TILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAIS 156 (500)
Q Consensus 80 lLLL~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli---~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaIs 156 (500)
+++++||+|.|+|||.+++ -|.+||+||+..++ ++|+|++|| |++++.|.. .++|
T Consensus 9 l~llmfe~lvcdkle~~~h------fw~lvf~plff~s~vsvgacvw~~Rh--------d~a~ele~~--------~avn 66 (267)
T KOG3879|consen 9 LLLLMFEVLVCDKLERDYH------FWLLVFMPLFFVSPVSVGACVWGFRH--------DLAFELEFT--------WAVN 66 (267)
T ss_pred HHHHHHHHHHhhhhccCce------ehHHHHHHHHhcChhhhhhhhhhhhc--------chHHHHHHH--------HHHH
Confidence 7799999999999999998 79999999999875 899999999 999888777 6789
Q ss_pred HHHHHHHHhhhhhhccCcccccceeehhhHHHHHHHHHHhhccccCCCcccCCCCCCCCCCccchhhhhccccccccccc
Q 010814 157 MVFFVAATVFTLLKLCGYVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRSPQTRPATSSSAITYLDWNSGLVVSAEE 236 (500)
Q Consensus 157 mlfll~f~IfLaLKLDg~~i~wsWwvVFIPLwI~d~fa~Lvc~~~~np~i~~~~~~~~~sss~vl~y~~w~~gl~vrs~e 236 (500)
++| +||++||||.. ++|||.+||+|+||+|++++++ ++||++|+ ++.+||.|
T Consensus 67 ilq----lIflaLKLD~~-v~WnW~VVFvPlWI~~sil~V~----------------------VLy~iv~s-~~~lrs~~ 118 (267)
T KOG3879|consen 67 ILQ----LIFLALKLDKI-VHWNWFVVFVPLWIFDSILLVV----------------------VLYKIVWS-VLFLRSRD 118 (267)
T ss_pred HHH----HHHHHHhcCcc-cCCceEEEeehHHHHHHHHHHH----------------------HHHHHHHH-HHhccccc
Confidence 999 99999999999 9999999999999999999998 99999999 99999999
Q ss_pred ccCCCccchhh-hhhhHHhHHHHHHHHHHHHHhhcCCCCCCc-CccchhhhHHHHHHHHHHHHHhhhhhHHHhhHhhhcC
Q 010814 237 EQNPDGMCGLS-DIGGHIMKVPVIGFQVLLCMHLEGTPAGAR-NIALPVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSG 314 (500)
Q Consensus 237 ~~~~qrr~~l~-~i~~~lL~IpllvFqILLc~KLeg~p~~~~-~i~~~~VFiPLfILq~~~vlf~~~~l~~~~~~~~~~~ 314 (500)
...+||+.++. ++.+...++|+++||++||.|||| +. .+||+++|+|+|++...++...+ +.
T Consensus 119 v~p~~rr~~l~~ai~~i~~Vlp~Laf~VlLc~KLdg----~~t~~sy~~vfaPLwlsl~t~i~~s~------------~k 182 (267)
T KOG3879|consen 119 VIPEQRRTHLTMAIWNITIVLPLLAFQVLLCHKLDG----HNTTFSYIVVFAPLWLSLLTAIATSG------------SK 182 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ccccceEEEEHHHHHHHHHHHHHHhc------------cC
Confidence 99999999999 888888999999999999999998 44 79999999999998666554433 26
Q ss_pred CCCceeEeeccccccchhhccc
Q 010814 315 AGTGIYFRISSRAHDCFGFLHR 336 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~ 336 (500)
+||.|||++. +|.++||-.
T Consensus 183 ggn~wwFGiR---k~fcqflle 201 (267)
T KOG3879|consen 183 GGNHWWFGIR---KDFCQFLLE 201 (267)
T ss_pred CCceEEEEec---chHHHHHHH
Confidence 7899999999 999999853
No 3
>KOG3879 consensus Predicted membrane protein [Function unknown]
Probab=99.79 E-value=1.1e-19 Score=176.78 Aligned_cols=129 Identities=25% Similarity=0.468 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHh---------hcccCCCCCCCCcccccchh---h
Q 010814 8 KSVQAVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVAR---------GRFSLPAPSVPHNRHWAPCH---A 75 (500)
Q Consensus 8 ~~~~a~~~~~~LLlFtILLaLKLDg~I~WSWwvVFiPLWI~d~lv~r---------g~f~~~~~~~~~rr~wa~~~---s 75 (500)
++++..++|+.-++|+|++|||||.+++|||.+||+|+||+|++.+. +.+.|+++..++.+.-.... .
T Consensus 55 ~a~ele~~~avnilqlIflaLKLD~~v~WnW~VVFvPlWI~~sil~V~VLy~iv~s~~~lrs~~v~p~~rr~~l~~ai~~ 134 (267)
T KOG3879|consen 55 LAFELEFTWAVNILQLIFLALKLDKIVHWNWFVVFVPLWIFDSILLVVVLYKIVWSVLFLRSRDVIPEQRRTHLTMAIWN 134 (267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCcccCCceEEEeehHHHHHHHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHH
Confidence 45578899999999999999999999999999999999999998884 22666666666644332222 2
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHHHHhhhhhhccCCCCCCccchHHHHhhhhHHHHHH
Q 010814 76 IVATPLLIAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILIDNFRMCRALMPGDEESMNDEAIWEALPHFWVAI 155 (500)
Q Consensus 76 mv~llLLL~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli~l~I~~fr~Cr~lmpg~~rS~e~eai~~~l~~FwIaI 155 (500)
++.++++++||++||.||||+.++ ++++.||+|+|+++.++++..++. |.|+||+++
T Consensus 135 i~~Vlp~Laf~VlLc~KLdg~~t~----~sy~~vfaPLwlsl~t~i~~s~~k-------------------ggn~wwFGi 191 (267)
T KOG3879|consen 135 ITIVLPLLAFQVLLCHKLDGHNTT----FSYIVVFAPLWLSLLTAIATSGSK-------------------GGNHWWFGI 191 (267)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccc----ceEEEEHHHHHHHHHHHHHHhccC-------------------CCceEEEEe
Confidence 466788999999999999988743 899999999999999888765543 468888888
Q ss_pred HHHH
Q 010814 156 SMVF 159 (500)
Q Consensus 156 smlf 159 (500)
+-.+
T Consensus 192 Rk~f 195 (267)
T KOG3879|consen 192 RKDF 195 (267)
T ss_pred cchH
Confidence 6555
No 4
>PF10269 Tmemb_185A: Transmembrane Fragile-X-F protein ; InterPro: IPR019396 This entry represents conserved transmembrane proteins that in humans are expressed from a region upstream of the FragileXF site and appear to be intimately linked with Fragile-X syndrome. The absence of the human TMEM185A protein does not necessarily lead to developmental delay, but might, in combination with other, currently unknown, factors. Alternatively, the TMEM185A protein is either redundant, or its function can be complemented by the highly similar chromosome 2 retro-pseudogene product, TMEM185B [].
Probab=99.47 E-value=2.3e-13 Score=133.49 Aligned_cols=171 Identities=23% Similarity=0.320 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccccchhHHHHHHHHHHHHHHhhc-----c-cCCCCCCCCcccccc-hhhH--HHHHHH
Q 010814 12 AVAAHSLLLTFTLLLVLKLDHVISYSWWIVFFPVWIFHAVVARGR-----F-SLPAPSVPHNRHWAP-CHAI--VATPLL 82 (500)
Q Consensus 12 a~~~~~~LLlFtILLaLKLDg~I~WSWwvVFiPLWI~d~lv~rg~-----f-~~~~~~~~~rr~wa~-~~sm--v~llLL 82 (500)
....+.+++.|.+++|.||++.-+.+|..||+|+|+..++.+... + ..+.+...++..|.. .+.. +..+..
T Consensus 48 ~~~~~lll~~f~~llc~~L~~~~~~~w~~VFiPL~~l~~~~I~~~i~~~r~~~~~~e~~~~~~~~~~~~~~~~~l~~if~ 127 (238)
T PF10269_consen 48 SVVAHLLLLAFELLLCIKLEGGSSISWSIVFIPLFVLSALSILICIWNFRHMPGDGEEMSDRSIWFELPFFWNILSLIFF 127 (238)
T ss_pred HHHHHHHHHHHHHHheeecCCCCcceeeeeeechhhHHHHHHHHHHHhhccCcccccCCCCchhhhhhhHHHHHHHHHHH
Confidence 457888999999999999988899999999999998887766422 2 111122223333322 1222 333556
Q ss_pred HHHHHHHHHHhcccccccccccceeeehhhHHHHHHHHHH----HhhhhhhccCCCCCCccchHHHHhhhhHH-HH-HHH
Q 010814 83 IAFELLLCIYLESIYEHGFEAVNLKIVFLPLLAFEITILI----DNFRMCRALMPGDEESMNDEAIWEALPHF-WV-AIS 156 (500)
Q Consensus 83 L~FelLLC~KLEg~~~~~~~~l~w~iVFiPL~iLli~l~I----~~fr~Cr~lmpg~~rS~e~eai~~~l~~F-wI-aIs 156 (500)
++|.++++.|||+..+ ++|..||+|+|+......+ .....++......+...+++.- +..... +. ..-
T Consensus 128 ~~f~v~l~Lkld~~i~-----~sW~~vFiPl~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 201 (238)
T PF10269_consen 128 LAFTVFLALKLDGVID-----WSWWIVFIPLWIADGLAFLVCLYSIIMSIRYLDRNPGLLPSQRRS-SLQSRICWGGLFL 201 (238)
T ss_pred HHHHHHHHHhcCCccc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhhHHH-HHHHHHHHHHHHH
Confidence 7899999999999988 9999999999999873322 3333443333322222221111 001111 10 123
Q ss_pred HHHHHHHHhhhhhhccCccc----ccceeehhhHHHH
Q 010814 157 MVFFVAATVFTLLKLCGYVG----ALGWWDLFINFGI 189 (500)
Q Consensus 157 mlfll~f~IfLaLKLDg~~i----~wsWwvVFIPLwI 189 (500)
+..+++|.++++.||||+ . +.+...+|+|+|+
T Consensus 202 ~i~~l~F~vLL~~kLe~~-~~~~~~~~~~~vf~PL~i 237 (238)
T PF10269_consen 202 VIPLLVFQVLLCMKLEGT-PWSAANIPISVVFIPLFI 237 (238)
T ss_pred HHHHHHHHHHHHHHhcCC-ccccccccHHHHHHHHHh
Confidence 444688999999999999 6 7899999999997
No 5
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.28 E-value=0.25 Score=48.63 Aligned_cols=118 Identities=6% Similarity=-0.124 Sum_probs=93.2
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhHHHhhHhhhcCCCC-ceeEeeccccccchhhcccccccccccccCCCChhhhhhhhhc
Q 010814 282 PVLFSPLFLLQGVGVVFSTTRLVEKIVILLRSGAGT-GIYFRISSRAHDCFGFLHRGSRLLGWWSIDEGSREDQARLVHE 360 (500)
Q Consensus 282 ~~VFiPLfILq~~~vlf~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gsrl~~~~s~d~~~~~~~~~~~~~ 360 (500)
..-+.|...-.+++.+..+.....+..-.-.++.++ .+|+....+....-....||-.-..||.++++....|.++...
T Consensus 42 ~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~~w~~~a~~ne~~~~~l~~nl~q~~~~~ 121 (207)
T KOG1100|consen 42 LEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQIWRDRAQTNEATVNSLRTNLDQVLAQC 121 (207)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHHHHHHHHHhChHHHHHHHHHHHHHHHhc
Confidence 344566666656666555554444443333344444 7889888999988999999999999999999999999999877
Q ss_pred CCCccccccCCChhHhhcCChhHHHHHHHHHHHhhchhhhhhcccHHHHHhhcccee
Q 010814 361 NSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNVIL 417 (500)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (500)
+ +.++++++.+..+..|+++.+-. +|+++++++.+|+..
T Consensus 122 -----------~-~~~~~~~~~~~~~g~~~~~~~~s------~~~~~~~~~~~~~~~ 160 (207)
T KOG1100|consen 122 -----------P-ASAPAEERGQKSCGDREADDGKS------SYVDPSVDNFKRMRS 160 (207)
T ss_pred -----------c-cccCchhhhccccCccccccccc------cccchhhhhhhcccc
Confidence 5 88999999999999999988765 899999999999985
No 6
>PF14995 TMEM107: Transmembrane protein
Probab=65.39 E-value=7.1 Score=35.77 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=31.1
Q ss_pred hcccHHHHHhhccceeeeehhhhHHHHHHHHhhccccchhh
Q 010814 402 TNYSRQEFERLQNVILSTLIVSFTVLVHCLKIINKGRSLLW 442 (500)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (500)
.||+|+||+..++|-..|+++++.-++--+--+=-|+|+-.
T Consensus 33 ~~~~~~~y~~~~~~l~v~L~~s~~~l~ie~~g~~sG~smf~ 73 (124)
T PF14995_consen 33 LDYTQAEYSTADTSLVVALSVSLLCLAIEFWGFFSGVSMFS 73 (124)
T ss_pred CCCcHHHHHHhhhheehHHHHHHHHHHHHHHHHHHhhcccc
Confidence 78999999999999999999998776544433445555543
No 7
>PTZ00453 cyclin-dependent kinase; Provisional
Probab=50.43 E-value=10 Score=33.71 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=32.5
Q ss_pred cccCCCChhhhhhhhhcC---CCcccc----------ccCCChhHhhcCChhH-HHHHHHHHHHhhchh
Q 010814 344 WSIDEGSREDQARLVHEN---SSGYNT----------FCGYPPEVVKKMPKKE-LAEEVWRLQAALGQQ 398 (500)
Q Consensus 344 ~s~d~~~~~~~~~~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 398 (500)
||||.+-+.| |+....+ ..-|+. ..=.|+|++|++||.- |.|+-|| .||=|
T Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~I~YS~kY~DD~yEYRHViLPk~~~k~ipk~~LL~E~EWR---~LGIq 71 (96)
T PTZ00453 7 FSLDANGQRE-ALIMISKLQSKILYSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWR---QLGVQ 71 (96)
T ss_pred EEEcCcchhh-hHHHHHhccccceeCCceeCCCcEEEEEEeCHHHHHhCCCCccccHHHHH---Hhhhc
Confidence 6887777666 5543322 222221 2346999999999874 5677898 66654
No 8
>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional
Probab=49.94 E-value=8.5 Score=33.62 Aligned_cols=26 Identities=54% Similarity=0.914 Sum_probs=21.2
Q ss_pred CCChhHhhcCChh-HHHHHHHHHHHhhchh
Q 010814 370 GYPPEVVKKMPKK-ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (500)
=.|+|++|+|||. =|.||-|| .||=|
T Consensus 21 iLPk~~~k~ipk~~LL~E~EWR---~LGIq 47 (86)
T PLN00010 21 VLPPEVAKLLPKNRLLSENEWR---AIGVQ 47 (86)
T ss_pred EeCHHHHHhCCcCcccCHHHHH---Hhccc
Confidence 3689999999976 56788998 77755
No 9
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=48.13 E-value=6.2 Score=24.91 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=8.7
Q ss_pred HHHHhhccce
Q 010814 407 QEFERLQNVI 416 (500)
Q Consensus 407 ~~~~~~~~~~ 416 (500)
-|.|||+|||
T Consensus 3 aeLerLkner 12 (17)
T PF12107_consen 3 AELERLKNER 12 (17)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 4889999997
No 10
>PF10109 FluMu_gp41: Mu-like prophage FluMu protein gp41; InterPro: IPR019289 Members of this family of prokaryotic proteins include various Gp41 proteins and related sequences [].
Probab=45.21 E-value=25 Score=28.53 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=21.3
Q ss_pred cccccCCChhHhhcCChhHHHHHHHHHH
Q 010814 365 YNTFCGYPPEVVKKMPKKELAEEVWRLQ 392 (500)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (500)
....||.||+.+++|+-+|..+=-.+++
T Consensus 51 ~a~l~gl~~~~l~~L~~~D~~~l~~~~~ 78 (82)
T PF10109_consen 51 IARLTGLPPEDLDQLDARDYNRLQEAVN 78 (82)
T ss_pred HHHhcCCCHHHHHcCCHHHHHHHHHHHH
Confidence 3456789999999999999885444443
No 11
>PF13282 DUF4070: Domain of unknown function (DUF4070)
Probab=43.99 E-value=21 Score=33.41 Aligned_cols=41 Identities=39% Similarity=0.538 Sum_probs=29.4
Q ss_pred hhhhhhhhcCCCccccccCCChhHhhcCChhHHHHHHHHHHHhh
Q 010814 352 EDQARLVHENSSGYNTFCGYPPEVVKKMPKKELAEEVWRLQAAL 395 (500)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (500)
|.|-||. .+++|-||-++ ...+-|||.+||++|--++=..+
T Consensus 8 ~~EGRLl-~~~~gd~~~~~--~NFiP~m~~e~L~~gy~~~~~~l 48 (146)
T PF13282_consen 8 EREGRLL-GDASGDNTDSS--TNFIPKMPREELADGYRRLMWRL 48 (146)
T ss_pred HHhcCCC-CCcCccccccc--cccccCCCHHHHHHHHHHHHHHH
Confidence 4566777 66788884222 66677899999999987766554
No 12
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=37.36 E-value=18 Score=34.17 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=42.7
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|.-+.||+++|...|..=...| |+|==| |+..+|.++.++++| ++.|++|+.+||++
T Consensus 85 l~~~~~~~~~~L~~lN~~Y~~kF-GfpFvi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~Ev~kIa~~ 152 (157)
T TIGR03164 85 LDQLSQEEFARFTRLNNAYRARF-GFPFIMAVKGKTKQSILAAFEARLNNDRETEFARALREIERIARF 152 (157)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHC-CCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56677788888877766545567 888544 466788888888874 56788888888875
No 13
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=36.37 E-value=29 Score=27.86 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.6
Q ss_pred HHHHH-HHHHHHHHhhhhhHHH
Q 010814 286 SPLFL-LQGVGVVFSTTRLVEK 306 (500)
Q Consensus 286 iPLfI-Lq~~~vlf~~~~l~~~ 306 (500)
+|+|+ +..+|++|++++.+..
T Consensus 1 ~PwWvY~vi~gI~~S~ym~v~t 22 (52)
T PF14147_consen 1 IPWWVYFVIAGIIFSGYMAVKT 22 (52)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 48999 8889999999987654
No 14
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.40 E-value=39 Score=33.07 Aligned_cols=53 Identities=28% Similarity=0.439 Sum_probs=43.3
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhHhhcC-ChhHHHHHHHHHHHhhchhhhhhcccHHHHHhhc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEVVKKM-PKKELAEEVWRLQAALGQQSEITNYSRQEFERLQ 413 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (500)
.+..|++||-.|..+- ||.--|. -+++|.+|.-+=|+--| +.+.|+||++|++
T Consensus 57 v~~A~~~~rl~liraH-----------PdLAgk~a~a~elta~S~~EQasAG----Ld~Ls~~E~a~f~ 110 (176)
T COG3195 57 VRAASEEERLALIRAH-----------PDLAGKAAIAGELTAESTSEQASAG----LDRLSPEEFARFT 110 (176)
T ss_pred HHcCCHHHHHHHHHhC-----------hhhHHHHHHHHHhhhhhHHHHHhcC----cccCCHHHHHHHH
Confidence 4678899999999886 7777554 57899999998777665 6799999999986
No 15
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=33.09 E-value=31 Score=30.17 Aligned_cols=34 Identities=32% Similarity=0.589 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHhhchhhhhhccc------HHHHHhhcc
Q 010814 381 KKELAEEVWRLQAALGQQSEITNYS------RQEFERLQN 414 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 414 (500)
+++|.+||.-||+.+..-.++|+|- ++|..||||
T Consensus 26 ~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~ 65 (86)
T PF12711_consen 26 NEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQS 65 (86)
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999996 455666665
No 16
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=32.90 E-value=23 Score=33.85 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=43.4
Q ss_pred ccCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 345 SIDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 345 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
.+|.-+.+|+++|...|..=-..| |+|==+ |+..+|.++.++++| +..|++|+.+||++
T Consensus 89 gl~~l~~~~~~~l~~lN~~Y~~kF-GfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~l 157 (166)
T PRK13798 89 GVADADEAVMAALAAGNRAYEEKF-GFVFLICATGRSADEMLAALQQRLHNDPETERKVVREELAKINRL 157 (166)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhC-CCeEEEeeCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 477778888888877665544566 887544 366788888888764 56789999999875
No 17
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=31.85 E-value=25 Score=33.37 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=43.4
Q ss_pred ccCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 345 SIDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 345 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
.+|..+.+|+++|-..|..=-.-| |+|==+ ||.-+|.++.+++++ +..|++|+.+||++
T Consensus 84 gl~~~~~~~~~~L~~lN~~Y~~kF-GfpFii~v~g~s~~~IL~~l~~Rl~n~~e~E~~~al~Ev~kIa~~ 152 (158)
T TIGR03180 84 GVDGADEETRAALLEGNAAYEEKF-GRIFLIRAAGRSAEEMLDALQARLPNDPEQELTIAAEQLRKINRL 152 (158)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHC-CCeEEEeeCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 567788888888877766544556 887544 366778888888764 56789999999875
No 18
>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.
Probab=29.51 E-value=32 Score=29.07 Aligned_cols=25 Identities=52% Similarity=0.882 Sum_probs=14.5
Q ss_pred CChhHhhcCChh-HHHHHHHHHHHhhchh
Q 010814 371 YPPEVVKKMPKK-ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 371 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (500)
.|+|++|++||. =|.|+-|| .||=|
T Consensus 20 Lpk~~~k~vp~~~llsE~EWR---~LGIq 45 (70)
T PF01111_consen 20 LPKEIAKLVPKDRLLSEEEWR---GLGIQ 45 (70)
T ss_dssp --HHHHGTS-CCS---HHHHH---HTT--
T ss_pred CCHHHHhhCccCcccCHHHHH---hhCCc
Confidence 689999999995 66777798 57744
No 19
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=28.97 E-value=35 Score=30.26 Aligned_cols=36 Identities=36% Similarity=0.471 Sum_probs=26.0
Q ss_pred CccccccCCChhHhhcCChhHHHHHHHHHHHhhchhh
Q 010814 363 SGYNTFCGYPPEVVKKMPKKELAEEVWRLQAALGQQS 399 (500)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (500)
.|---|.|-||+.+ |-+..||.+||.|.++....|.
T Consensus 41 ag~lLf~~~~~~~~-k~AEqELL~Ei~Rrr~~qp~~~ 76 (93)
T PF07216_consen 41 AGELLFGGSSPELM-KQAEQELLEEIQRRRQQQPQQP 76 (93)
T ss_pred HHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHcCCCCC
Confidence 34445666678854 5688999999999998665543
No 20
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.29 E-value=25 Score=35.64 Aligned_cols=65 Identities=29% Similarity=0.453 Sum_probs=49.9
Q ss_pred hhhhhhhhcCCCccc----cccCCChhHhhcCChhHHHHHHHHHHHhhchhh--hhhcccHHHHHhhccceeeeeh
Q 010814 352 EDQARLVHENSSGYN----TFCGYPPEVVKKMPKKELAEEVWRLQAALGQQS--EITNYSRQEFERLQNVILSTLI 421 (500)
Q Consensus 352 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 421 (500)
+-+.|-|-.++-.|| +||-.=||+|+|...++++++ ||-..|| |-.-..|-|..-.+||.++-+-
T Consensus 129 ~~~kr~lA~~SlaFN~kn~~F~~lFPE~Vee~nq~~~a~~-----~a~~~~t~~e~~~~p~~~~~~v~~e~~l~~~ 199 (244)
T KOG0894|consen 129 DQDKRMLAKSSLAFNLKNPKFCELFPEVVEEYNQEQLAKQ-----AAAVQGTTPEANGVPAAEFALVENEEILDLG 199 (244)
T ss_pred HHHHHHHHHhhhhhccCChHHHHHhHHHHHHHHHHHHHhh-----hhcccCCCcCcccCcchhhhccCccceecCC
Confidence 445566677778888 788888999999999999987 5555554 3444677888999999987654
No 21
>PF12650 DUF3784: Domain of unknown function (DUF3784); InterPro: IPR017259 This group represents an uncharacterised conserved protein.
Probab=26.46 E-value=55 Score=27.95 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=17.0
Q ss_pred CccccccCCChhHhhcCChhHHHHHHHH
Q 010814 363 SGYNTFCGYPPEVVKKMPKKELAEEVWR 390 (500)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (500)
+||||-+ .|=-+|..++-+.+-+=+
T Consensus 24 aGyntms---~eEk~~~D~~~l~r~~g~ 48 (97)
T PF12650_consen 24 AGYNTMS---KEEKEKYDKKKLCRFMGK 48 (97)
T ss_pred hhcccCC---HHHHHHhhHHHHHHHHHH
Confidence 5899987 776667766666654433
No 22
>PHA02755 hypothetical protein; Provisional
Probab=23.63 E-value=92 Score=27.31 Aligned_cols=39 Identities=31% Similarity=0.526 Sum_probs=36.1
Q ss_pred hhHhhcCChhHHHHHHHHHHHhhchhhhhhcccHHHHHh
Q 010814 373 PEVVKKMPKKELAEEVWRLQAALGQQSEITNYSRQEFER 411 (500)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (500)
||.|.--|-.|-+||+....-|||-=+....+..|-+|.
T Consensus 15 pdavqgsp~~e~aee~ykmkyalgic~alke~dpk~fee 53 (96)
T PHA02755 15 PDAVQGSPAAEAAEEKYKMKYALGICQALKEADPKAFEE 53 (96)
T ss_pred cccccCChHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 688999999999999999999999999999999888875
No 23
>PTZ00471 60S ribosomal protein L27; Provisional
Probab=22.94 E-value=35 Score=32.09 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.5
Q ss_pred cccCCCChhhh-hhhhhcCCCccccccCCChhHhhcCChhHHHH
Q 010814 344 WSIDEGSREDQ-ARLVHENSSGYNTFCGYPPEVVKKMPKKELAE 386 (500)
Q Consensus 344 ~s~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (500)
=.+|||++|-+ .+...+| .--||-.+.|+|+|+.+++
T Consensus 27 k~~ddgt~drpy~halVaG------IdryP~kVtk~M~kkki~K 64 (134)
T PTZ00471 27 QNFDTASKERPYGHALVAG------IKKYPKKVVRGMSKRTIAR 64 (134)
T ss_pred eecCCCCccCcCceEEEEe------ecccchhhhhhccHHHHHH
Confidence 36899998755 2222222 2238999999999998875
No 24
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=22.88 E-value=74 Score=27.44 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=30.0
Q ss_pred CChhHHHHHHHHHHHhhchhhhhhcccHHHHHhhccc
Q 010814 379 MPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNV 415 (500)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (500)
=.|.+|.+|+--||..|-+=..=..=-++|+|+|++|
T Consensus 16 e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 16 EEKEELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999887666666678899999876
No 25
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=21.02 E-value=43 Score=31.48 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=36.6
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|.-+.|+.++|...|..=-.-| |+|==| |+.-++.++.+++++ ++.|++||.+||.+
T Consensus 88 l~~~~~~~~~~L~~lN~~Y~~kF-Gf~Fvi~~~g~s~~~Il~~l~~Rl~n~~~~E~~~A~~Ev~kIa~~ 155 (159)
T PF09349_consen 88 LDSLDEEELAELAALNQAYEEKF-GFPFVICARGRSAAEILAALERRLNNDPEEELRIALEEVAKIARL 155 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHH-SS-----GTT--HHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-CCceEeecCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 45567778888776665544567 887543 566777777777763 67788888888864
Done!