Query 010814
Match_columns 500
No_of_seqs 194 out of 252
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 14:49:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hy6_A General control protein 64.0 3.7 0.00013 29.1 2.1 17 381-397 17-33 (34)
2 2r2v_A GCN4 leucine zipper; co 53.6 7.4 0.00025 27.6 2.2 17 381-397 17-33 (34)
3 3m48_A General control protein 50.4 9.1 0.00031 27.0 2.2 18 381-398 16-33 (33)
4 1uo4_A General control protein 48.0 10 0.00036 26.9 2.2 18 381-398 17-34 (34)
5 2oxj_A Hybrid alpha/beta pepti 42.4 14 0.00048 26.2 2.2 17 381-397 17-33 (34)
6 2wq1_A General control protein 39.4 17 0.00058 25.6 2.2 17 381-397 16-32 (33)
7 3c3g_A Alpha/beta peptide with 38.1 19 0.00063 25.4 2.2 17 381-397 16-32 (33)
8 3c3f_A Alpha/beta peptide with 36.9 20 0.00067 25.4 2.2 17 381-397 17-33 (34)
9 2bni_A General control protein 32.4 25 0.00084 25.0 2.1 17 381-397 17-33 (34)
10 1kd8_A GABH AIV, GCN4 acid bas 32.2 25 0.00086 25.2 2.1 17 381-397 17-33 (36)
11 1kd8_B GABH BLL, GCN4 acid bas 27.6 33 0.0011 24.6 2.1 17 381-397 17-33 (36)
12 1cks_A Cyclin-dependent kinase 24.2 19 0.00064 30.0 0.4 25 371-398 24-49 (79)
13 2o8i_A AGR_C_4230P, hypothetic 23.0 25 0.00085 32.2 1.0 58 346-404 89-156 (165)
14 3qy2_A Cyclin-dependent kinase 20.7 29 0.00098 30.7 0.9 27 369-398 44-80 (117)
15 2q37_A OHCU decarboxylase; 2-O 20.6 26 0.00089 32.7 0.6 58 346-404 105-172 (181)
No 1
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=63.99 E-value=3.7 Score=29.11 Aligned_cols=17 Identities=41% Similarity=0.526 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|.+|..||-||+..|||
T Consensus 17 ~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 17 NYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 68999999999999997
No 2
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=53.60 E-value=7.4 Score=27.60 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|.+|+.||-||+.-|||
T Consensus 17 ~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 17 LYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 67999999999999998
No 3
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=50.43 E-value=9.1 Score=27.01 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.3
Q ss_pred hhHHHHHHHHHHHhhchh
Q 010814 381 KKELAEEVWRLQAALGQQ 398 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (500)
+++|-.||-||++-|++|
T Consensus 16 n~~Le~EV~RLk~Ll~~~ 33 (33)
T 3m48_A 16 NWNLENEVARLKKLVGER 33 (33)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHhhcC
Confidence 578999999999999886
No 4
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=48.02 E-value=10 Score=26.86 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHhhchh
Q 010814 381 KKELAEEVWRLQAALGQQ 398 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~ 398 (500)
+.+|..||-||+.-||||
T Consensus 17 n~~Le~EV~RLk~LL~~~ 34 (34)
T 1uo4_A 17 LYHIENELARIKKLLGER 34 (34)
T ss_dssp HHHHHHHHHHHHHHTTC-
T ss_pred hHHHHHHHHHHHHHHccC
Confidence 678999999999999986
No 5
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=42.35 E-value=14 Score=26.17 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|+||..||-||++-|++
T Consensus 17 n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 17 NXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 68999999999999886
No 6
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=39.36 E-value=17 Score=25.62 Aligned_cols=17 Identities=18% Similarity=0.159 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|.+|..||-||+.-|||
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 67999999999999997
No 7
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=38.06 E-value=19 Score=25.43 Aligned_cols=17 Identities=12% Similarity=0.176 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|++|..||-||+.-|||
T Consensus 16 ~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 16 XYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHcc
Confidence 68999999999999987
No 8
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=36.93 E-value=20 Score=25.43 Aligned_cols=17 Identities=18% Similarity=0.154 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|++|..||-||+.-|||
T Consensus 17 ~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 17 LYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHHHHHHHHhc
Confidence 68999999999999986
No 9
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=32.41 E-value=25 Score=24.97 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|++|..||-||+.-|||
T Consensus 17 ~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 17 GHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 67899999999999987
No 10
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=32.18 E-value=25 Score=25.21 Aligned_cols=17 Identities=29% Similarity=0.251 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
|.+|..||-||+.-|||
T Consensus 17 ~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 17 VWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 67899999999998886
No 11
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.65 E-value=33 Score=24.57 Aligned_cols=17 Identities=24% Similarity=0.177 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHhhch
Q 010814 381 KKELAEEVWRLQAALGQ 397 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~ 397 (500)
+.+|..||-||+.-|||
T Consensus 17 ~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 17 LWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 67899999999999886
No 12
>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*
Probab=24.17 E-value=19 Score=29.95 Aligned_cols=25 Identities=48% Similarity=0.864 Sum_probs=19.8
Q ss_pred CChhHhhcCChh-HHHHHHHHHHHhhchh
Q 010814 371 YPPEVVKKMPKK-ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 371 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (500)
.|+|++|++||. =|.|+-|| .||=|
T Consensus 24 Lpke~~k~vpk~~LlsE~EWR---~LGIq 49 (79)
T 1cks_A 24 LPRELSKQVPKTHLMSEEEWR---RLGVQ 49 (79)
T ss_dssp CCHHHHHTSCSSSCCCHHHHH---HHTCC
T ss_pred cCHHHHHhCCcccccCHHHHH---HhCcc
Confidence 689999999995 55888997 46644
No 13
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=22.99 E-value=25 Score=32.17 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=41.8
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|..+.||.++|-..|..=-..| |+|==| |+.-+|.++.++++| ++.|+.|+.+|+++
T Consensus 89 l~~~~~~~~~~l~~lN~~Ye~kF-GfpFvi~v~g~~~~~Il~~l~~Rl~nd~~~E~~~a~~e~~kIa~~ 156 (165)
T 2o8i_A 89 LDRLSPQEHARFTQLNSAYTEKF-GFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKIAWL 156 (165)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHH-SSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-CCeeEeeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 57788888888776665544567 888655 788888888888764 45677777777754
No 14
>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}
Probab=20.66 E-value=29 Score=30.73 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=21.3
Q ss_pred cCCChhHhhcCChh----------HHHHHHHHHHHhhchh
Q 010814 369 CGYPPEVVKKMPKK----------ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 369 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 398 (500)
.=.|+|++|++||. =|.||-|| .||=|
T Consensus 44 ViLPke~~k~iPk~~~~~~~g~~rLLsE~EWR---~LGIq 80 (117)
T 3qy2_A 44 VMLPKAMLKVIPSDYFNSEVGTLRILTEDEWR---GLGIT 80 (117)
T ss_dssp EECCGGGGGGSCGGGBCTTTSSBCCCCHHHHH---HTTCC
T ss_pred EEcCHHHHHhCchhhcccccccceecCHHHHH---Hhccc
Confidence 34799999999995 48899997 66644
No 15
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=20.62 E-value=26 Score=32.70 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=39.8
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|..+.||.++|-..|..=-..| |+|==| |+.-+|.++.++++| ++.|+.|+.+|+++
T Consensus 105 l~~~~~~e~~~L~~LN~~Ye~kF-GfpFVi~v~G~s~~~IL~~l~~RL~N~~~~E~~~Al~Ev~kIa~~ 172 (181)
T 2q37_A 105 FATTSASALQELAEWNVLYKKKF-GFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITEL 172 (181)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHH-SSCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-CCeEEEEeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 46677788888766554433456 888555 677777777777653 66777777777764
Done!