Query 010814
Match_columns 500
No_of_seqs 194 out of 252
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 14:49:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010814.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010814hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2o70a1 a.288.1.1 (A:2-166) OH 33.6 6.9 0.0005 33.6 1.5 59 345-404 91-159 (165)
2 d1riqa1 a.203.1.1 (A:237-457) 26.9 5.4 0.00039 36.1 -0.5 38 365-403 151-189 (221)
3 d1cksa_ d.97.1.1 (A:) CksHs2 { 23.8 9 0.00066 29.5 0.4 26 370-398 22-48 (74)
4 d1puca_ d.97.1.1 (A:) suc1 {Fi 21.5 13 0.00093 30.2 0.9 27 369-398 40-76 (101)
5 d2q37a1 a.288.1.1 (A:6-160) OH 19.7 13 0.00097 31.7 0.6 58 346-404 80-147 (155)
6 d1qb3a_ d.97.1.1 (A:) cks1 {Ba 19.3 16 0.0011 30.2 1.0 27 369-398 39-75 (113)
7 d2o8ia1 a.288.1.1 (A:1-165) Hy 17.8 18 0.0013 30.7 1.1 58 346-404 89-156 (165)
8 d2p5ia1 d.104.1.3 (A:14-278) H 16.0 83 0.0061 28.0 5.4 36 377-412 215-250 (265)
9 d2o97b1 a.55.1.1 (B:1-90) HU p 14.6 39 0.0028 25.6 2.2 27 379-415 1-27 (90)
10 d1zyma1 a.60.10.1 (A:22-144) E 13.1 48 0.0035 26.3 2.5 38 377-414 8-46 (123)
No 1
>d2o70a1 a.288.1.1 (A:2-166) OHCU decarboxylase, UraD {Zebrafish (Brachydanio rerio) [TaxId: 7955]}
Probab=33.61 E-value=6.9 Score=33.59 Aligned_cols=59 Identities=15% Similarity=0.271 Sum_probs=44.5
Q ss_pred ccCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 345 SIDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 345 s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
.+|.-+.||+++|...|..=...| |+|==+ ||...|.++.++.++ ++.|++||.+||..
T Consensus 91 gl~~~~~~e~~~l~~lN~~Y~~kF-GfpFIi~v~g~s~~~Il~~l~~Rl~n~~~~E~~~A~~ev~kIa~~ 159 (165)
T d2o70a1 91 GMTTLDSAEIVHMYRLNSEYKERF-GFPFVICARLNNKADIVRQLSERLKNRRTAELECAIEEVKKICSL 159 (165)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHH-SSCCCCCGGGCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHHc-CCeeEEeeCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 367888999999888776655678 888433 677778887777764 67788888888864
No 2
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=26.90 E-value=5.4 Score=36.06 Aligned_cols=38 Identities=21% Similarity=0.524 Sum_probs=23.2
Q ss_pred cccccCCChhHhhcCChhHH-HHHHHHHHHhhchhhhhhc
Q 010814 365 YNTFCGYPPEVVKKMPKKEL-AEEVWRLQAALGQQSEITN 403 (500)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 403 (500)
|.|+ |+|||++++|.++.= -=.+-..++++.||-+..|
T Consensus 151 ydTy-GfP~elt~eia~e~gl~vD~~gF~~~m~eqre~Sr 189 (221)
T d1riqa1 151 YDTY-GFPVDLIDEIAREKGLGIDLEGFQCELEEQRERAR 189 (221)
T ss_dssp HHTS-CCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHS
T ss_pred HHcc-ccCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 4555 999999998877510 0001245666667766664
No 3
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.75 E-value=9 Score=29.55 Aligned_cols=26 Identities=46% Similarity=0.765 Sum_probs=20.2
Q ss_pred CCChhHhhcCChh-HHHHHHHHHHHhhchh
Q 010814 370 GYPPEVVKKMPKK-ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 398 (500)
=.|.|+.|++||. -|.|+-||= ||=|
T Consensus 22 iLpk~~~k~~pk~~LlsE~EWR~---LGIq 48 (74)
T d1cksa_ 22 MLPRELSKQVPKTHLMSEEEWRR---LGVQ 48 (74)
T ss_dssp ECCHHHHHTSCSSSCCCHHHHHH---HTCC
T ss_pred EeCHHHHhhCCCccccCHHHHHH---hCcc
Confidence 4689999999987 467888983 6644
No 4
>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=21.47 E-value=13 Score=30.17 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=20.8
Q ss_pred cCCChhHhhcCChh----------HHHHHHHHHHHhhchh
Q 010814 369 CGYPPEVVKKMPKK----------ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 369 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 398 (500)
.=.|.|++|++||. -|.|+-|| .||=|
T Consensus 40 ViLpk~~~k~ipk~~~~~~~g~~rLLtE~EWR---~LGIq 76 (101)
T d1puca_ 40 VMLPKAMLKAIPTDYFNPETGTLRILQEEEWR---GLGIT 76 (101)
T ss_dssp EECCHHHHTTSCGGGBCTTTSSBCCCCHHHHH---HTTCC
T ss_pred EEeCHHHHHhcchhhccccccccccCCHHHHH---Hhccc
Confidence 34789999999996 67888897 36644
No 5
>d2q37a1 a.288.1.1 (A:6-160) OHCU decarboxylase, UraD {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=19.69 E-value=13 Score=31.66 Aligned_cols=58 Identities=19% Similarity=0.124 Sum_probs=40.5
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChh-HhhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPE-VVKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|..+.||+++|...|..=..-| |||== -|+.-.|.++.+++.+ +.-|++||.+||++
T Consensus 80 l~~~~~~~~~~l~~lN~~Y~~kF-GfpFIi~v~g~s~~eIL~~l~~Rl~n~~~~E~~~a~~Ev~kIa~l 147 (155)
T d2q37a1 80 FATTSASALQELAEWNVLYKKKF-GFIFIICASGRTHAEMLHALKERYENRPIVELEIAAMEQMKITEL 147 (155)
T ss_dssp HTSCCHHHHHHHHHHHHHHHHHH-SSCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHHHHc-CCeeEEeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 57778888888776665533444 77742 2677778888777763 56788888888865
No 6
>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=19.28 E-value=16 Score=30.15 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=21.5
Q ss_pred cCCChhHhhcCChh----------HHHHHHHHHHHhhchh
Q 010814 369 CGYPPEVVKKMPKK----------ELAEEVWRLQAALGQQ 398 (500)
Q Consensus 369 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 398 (500)
.=.|.|++|++||. =|.|+-|| .||=|
T Consensus 39 ViLpk~~~k~ipk~~~~~~~g~~rLLtE~EWR---~LGIq 75 (113)
T d1qb3a_ 39 VMLPKAMLKVIPSDYFNSEVGTLRILTEDEWR---GLGIT 75 (113)
T ss_dssp EECCHHHHHTSCGGGBCTTTSSBCCCCHHHHH---HTTCC
T ss_pred EEeCHHHHHhcchhhccccccccccCCHHHHH---HhCcc
Confidence 34789999999986 68888998 47754
No 7
>d2o8ia1 a.288.1.1 (A:1-165) Hypothetical protein Atu2327 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=17.80 E-value=18 Score=30.74 Aligned_cols=58 Identities=26% Similarity=0.384 Sum_probs=41.7
Q ss_pred cCCCChhhhhhhhhcCCCccccccCCChhH-hhcCChhHHHHHHHH---------HHHhhchhhhhhcc
Q 010814 346 IDEGSREDQARLVHENSSGYNTFCGYPPEV-VKKMPKKELAEEVWR---------LQAALGQQSEITNY 404 (500)
Q Consensus 346 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ 404 (500)
+|.-|.||+++|-..|+.=...| |+|==+ ||.-.|.++.+++++ ++.|++||.+|+++
T Consensus 89 l~~~~~~e~~~l~~lN~~Y~~kF-GfpFIi~v~g~~~~~Il~~l~~Rl~n~~~~E~~~a~~ev~kIa~~ 156 (165)
T d2o8ia1 89 LDRLSPQEHARFTQLNSAYTEKF-GFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATGQVEKIAWL 156 (165)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHH-SSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHc-CCeeEEeeCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 56778888888766655433467 887433 677788888888774 56788888888865
No 8
>d2p5ia1 d.104.1.3 (A:14-278) Hypothetical protein BH3822 {Bacillus halodurans [TaxId: 86665]}
Probab=16.03 E-value=83 Score=27.98 Aligned_cols=36 Identities=8% Similarity=-0.017 Sum_probs=23.3
Q ss_pred hcCChhHHHHHHHHHHHhhchhhhhhcccHHHHHhh
Q 010814 377 KKMPKKELAEEVWRLQAALGQQSEITNYSRQEFERL 412 (500)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (500)
+.++.+|+.+.+-.--+.++.+.+..+++++|.+..
T Consensus 215 ~~~~~~~v~~~l~~~f~~~~~~l~~~~lt~~e~~~~ 250 (265)
T d2p5ia1 215 QPHNVSDVLLKALMTLQQHGASLLTESLSADEWLLY 250 (265)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCCCEECCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 346666766655544445677778888888776543
No 9
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=14.57 E-value=39 Score=25.60 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=18.9
Q ss_pred CChhHHHHHHHHHHHhhchhhhhhcccHHHHHhhccc
Q 010814 379 MPKKELAEEVWRLQAALGQQSEITNYSRQEFERLQNV 415 (500)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (500)
|.|+||+++| .++| .++|.|.++.=|+
T Consensus 1 M~K~eLi~~i-------a~~~---~l~~~~~~~~v~~ 27 (90)
T d2o97b1 1 MNKSQLIDKI-------AAGA---DISKAAAGRALDA 27 (90)
T ss_dssp CBHHHHHHHH-------HHTT---C-CHHHHHHHHHH
T ss_pred CCHHHHHHHH-------HHcc---CCCHHHHHHHHHH
Confidence 8999999987 2444 4678888776554
No 10
>d1zyma1 a.60.10.1 (A:22-144) Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain {Escherichia coli [TaxId: 562]}
Probab=13.06 E-value=48 Score=26.25 Aligned_cols=38 Identities=16% Similarity=0.269 Sum_probs=25.5
Q ss_pred hcCChhHHHHHHHHHHHhhch-hhhhhcccHHHHHhhcc
Q 010814 377 KKMPKKELAEEVWRLQAALGQ-QSEITNYSRQEFERLQN 414 (500)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 414 (500)
+|.+.+|.-+|+-|++.|+.. .+++.+..++--+.+..
T Consensus 8 ~~i~~~~v~~E~~rl~~A~~~~~~~L~~l~~~~~~~~~~ 46 (123)
T d1zyma1 8 KKISADQVDQEVERFLSGRAKASAQLETIKTKAGETFGE 46 (123)
T ss_dssp CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 567788999999999999865 34554444444344433
Done!