BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010815
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R8V|A Chain A, Native Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae
pdb|3B8G|A Chain A, Crysta Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
N-Acetyl-Glutamate
pdb|3D2P|A Chain A, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2P|B Chain B, Crystal Structure Of N-acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-arginine
pdb|3D2M|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase From
Neisseria Gonorrhoeae Complexed With Coenzyme A And
L-Glutamate
pdb|4I49|A Chain A, Structure Of Ngnags Bound With Bisubstrate Analog Coa-Nag
Length = 456
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 3/194 (1%)
Query: 295 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIK 354
+++A GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I
Sbjct: 262 ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIA 321
Query: 355 QIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 414
+I+PL E G L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP
Sbjct: 322 ALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSP 381
Query: 415 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--R 472
+ + G G++LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R
Sbjct: 382 QAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYR 441
Query: 473 INLSRNSKYYMKKL 486
N RNS +++L
Sbjct: 442 SN-GRNSHILVRRL 454
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 69
+ DI L LGIR VL+ G + +D+L + +G Y R+TD SL A + AG +
Sbjct: 63 LAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTV 122
Query: 70 RMMIEAKLSPGPPICNIRRHGDSSRWHEV-GVSVASGNFLAAKRKGVVDGVDYGATGEVK 128
R EA L C G S + V + SGNFL A+ GV+DG D G ++
Sbjct: 123 RSRFEAAL------C-----GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIR 171
Query: 129 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII--DGP 186
K D +R +LD G +V + LG+S G+ N + + A + A++++A+KL+ + DG
Sbjct: 172 KTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDG- 230
Query: 187 ILDESGHLIRFLTLQEADSLIRQRVKQS 214
I G L L+ QEA SL ++
Sbjct: 231 ISRPDGTLAETLSAQEAQSLAEHAASET 258
>pdb|2R98|A Chain A, Crystal Structure Of N-Acetylglutamate Synthase (Selenomet
Substituted) From Neisseria Gonorrhoeae
Length = 456
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 114/194 (58%), Gaps = 3/194 (1%)
Query: 295 LAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIK 354
+++A GV RV +L+G G LL ELF R+G+GT +A + + R A D+ I
Sbjct: 262 ISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAFVSIRQAHSGDIPHIA 321
Query: 355 QIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 414
+I+PL E G L+ R+ E L + F ++E +G + CAAL F + CGE+A + VSP
Sbjct: 322 ALIRPLEEQGILLHRSREYLENHISEFSILEHDGNLYGCAALKTFAEADCGEIACLAVSP 381
Query: 415 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRK--R 472
+ + G G++LL +I KA +G+ LF L+T T +WF RGF+ S + +PE RRK R
Sbjct: 382 QAQDGGYGERLLAHIIDKARGIGISRLFALSTNTGEWFAERGFQTASEDELPETRRKDYR 441
Query: 473 INLSRNSKYYMKKL 486
N RNS +++L
Sbjct: 442 SN-GRNSHILVRRL 454
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 69
+ DI L LGIR VL+ G + +D+L + +G Y R+TD SL A + AG +
Sbjct: 63 LAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTV 122
Query: 70 RMMIEAKLSPGPPICNIRRHGDSSRWHEV-GVSVASGNFLAAKRKGVVDGVDYGATGEVK 128
R EA L C G S + V + SGNFL A+ GV+DG D G ++
Sbjct: 123 RSRFEAAL------C-----GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDXEYAGVIR 171
Query: 129 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII--DGP 186
K D +R +LD G +V LG+S G+ N + + A + A++++A+KL+ + DG
Sbjct: 172 KTDTAALRFQLDAGNIVWXPPLGHSYGGKTFNLDXVQAAASVAVSLQAEKLVYLTLSDG- 230
Query: 187 ILDESGHLIRFLTLQEADSLIRQRVKQS 214
I G L L+ QEA SL ++
Sbjct: 231 ISRPDGTLAETLSAQEAQSLAEHAASET 258
>pdb|3E0K|A Chain A, Crystal Structure Of C-Termianl Domain Of
N-Acetylglutamate Synthase From Vibrio Parahaemolyticus
Length = 150
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 87/141 (61%)
Query: 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF 399
E R A + D+ GI ++I PL E G LVRR+ E+L + + F ++E++G II CAAL+P+
Sbjct: 4 EQVRQAGIDDIGGILELIHPLEEQGILVRRSREQLEQEIGKFTIIEKDGLIIGCAALYPY 63
Query: 400 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRE 459
+E+ E A + + P+ R +G LL+Y + ++ S ++ +F+LTT + WF+ +GF E
Sbjct: 64 SEERKAEXACVAIHPDYRDGNRGLLLLNYXKHRSKSENINQIFVLTTHSLHWFREQGFYE 123
Query: 460 CSIEMIPEERRKRINLSRNSK 480
++ +P ++ N R SK
Sbjct: 124 VGVDYLPGAKQGLYNFQRKSK 144
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 11 VQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIR 70
+QDI L + GI+ ++V G I +++ + G E + +R+TD +++ +
Sbjct: 43 IQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTMEI-------VE 95
Query: 71 MMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV 130
M++ K++ + N+ HG + VG+ + A+++ D G G+VKKV
Sbjct: 96 MVLVGKINK-EIVMNLNLHGGRA----VGICGKDSKLIVAEKE--TKHGDIGYVGKVKKV 148
Query: 131 DVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDE 190
+ + ++ + +++ +G G N N A A ++ A+KLI + D + +
Sbjct: 149 NPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLK 208
Query: 191 SGHLIRFLTLQEADSLIR 208
G LI LT EA+ LIR
Sbjct: 209 DGKLISTLTPDEAEELIR 226
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 290 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMV 334
G + ++ A R GV VH+++G + +LLE+F R G+GTM+
Sbjct: 233 GMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277
>pdb|2BUF|A Chain A, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|B Chain B, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|C Chain C, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|D Chain D, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|E Chain E, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|F Chain F, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|G Chain G, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|H Chain H, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|I Chain I, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|J Chain J, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|K Chain K, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
pdb|2BUF|L Chain L, Arginine Feed-Back Inhibitable Acetylglutamate Kinase
Length = 300
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 103/207 (49%), Gaps = 24/207 (11%)
Query: 12 QDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRM 71
+D+ + +GI V+V G QI LL E+ ++ R+TD AA M+ + M
Sbjct: 49 RDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTD----AATMDV---VEM 101
Query: 72 MIEAKLSPGPPICN-IRRHGDSSRWHEVGVSVASGNFLAAKRKGVV---------DGVDY 121
++ +++ I N I RHG S+ +G++ + AK+ V + +D
Sbjct: 102 VLGGQVNK--DIVNLINRHGGSA----IGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDI 155
Query: 122 GATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLIC 181
G GEV V+V + + G + +++ +G S+GE N N VA A A++A+KL+
Sbjct: 156 GHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLML 215
Query: 182 IID-GPILDESGHLIRFLTLQEADSLI 207
+ + ++D+ G ++ L+ ++ + LI
Sbjct: 216 LTNIAGLMDKQGQVLTGLSTEQVNELI 242
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 290 GYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336
G L ++ A + GV H++DG + +LLE+F G+GT++++
Sbjct: 250 GMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISN 296
>pdb|3ZZI|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|3ZZI|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae
pdb|4AB7|A Chain A, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|B Chain B, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|C Chain C, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|D Chain D, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|E Chain E, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|F Chain F, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|G Chain G, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
pdb|4AB7|H Chain H, Crystal Structure Of A Tetrameric Acetylglutamate Kinase
From Saccharomyces Cerevisiae Complexed With Its
Substrate N-Acetylglutamate
Length = 464
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 14 IAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 73
+AFL+H+G+ +++ GT Q++ L +G E Y+ RITD ++A + +
Sbjct: 71 LAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVR------KCFL 124
Query: 74 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 133
E L + + + G +R + SG F A +D Y G +K V
Sbjct: 125 EQNLK---LVTALEQLGVRAR------PITSGVFTA----DYLDKDKYKLVGNIKSVTKE 171
Query: 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID--GPILDES 191
+ + G L IL++L ++SG++LN N A A E K++ + + G I +
Sbjct: 172 PIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGST 231
Query: 192 GHLIRFLTL-QEADSLIRQ 209
G I + L +E D L++Q
Sbjct: 232 GEKISMINLDEEYDDLMKQ 250
>pdb|3ZZF|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZF|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase
Complexed With Its Substrate N-Acetylglutamate
pdb|3ZZG|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZG|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase Without
Ligands
pdb|3ZZH|A Chain A, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|B Chain B, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|C Chain C, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
pdb|3ZZH|D Chain D, Crystal Structure Of The Amino Acid Kinase Domain From
Saccharomyces Cerevisiae Acetylglutamate Kinase In
Complex With Its Feed-Back Inhibitor L-Arginine
Length = 307
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 22/199 (11%)
Query: 14 IAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 73
+AFL+H+G+ +++ GT Q++ L +G E Y+ RITD ++A + +
Sbjct: 71 LAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVR------KCFL 124
Query: 74 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 133
E L + + + G +R + SG F A +D Y G +K V
Sbjct: 125 EQNLK---LVTALEQLGVRAR------PITSGVFTA----DYLDKDKYKLVGNIKSVTKE 171
Query: 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID--GPILDES 191
+ + G L IL++L ++SG++LN N A A E K++ + + G I +
Sbjct: 172 PIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIINGST 231
Query: 192 GHLIRFLTL-QEADSLIRQ 209
G I + L +E D L++Q
Sbjct: 232 GEKISMINLDEEYDDLMKQ 250
>pdb|3S6K|A Chain A, Crystal Structure Of Xcnags
Length = 467
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 94/203 (46%), Gaps = 23/203 (11%)
Query: 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 69
+ ++FL +G+ +++ G Q+D LS G E + + R+T +LA +
Sbjct: 80 LTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQAS 139
Query: 70 RM-MIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK 128
+ ++EA ++++G + S+ G F A ++ YG GEVK
Sbjct: 140 NLKLVEA----------LQQNGARA------TSITGGVFEAE----YLNRDTYGLVGEVK 179
Query: 129 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPI 187
V++ + L G + ++++LG + SG++LN N A ++ K+I + G +
Sbjct: 180 AVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGL 239
Query: 188 LDESGHLIRFLTLQ-EADSLIRQ 209
LD G LI + L E D L +Q
Sbjct: 240 LDAEGKLIDSINLSTEYDHLXQQ 262
>pdb|2JJ4|A Chain A, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|B Chain B, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2JJ4|C Chain C, The Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc7942
pdb|2V5H|A Chain A, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|B Chain B, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|C Chain C, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|D Chain D, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|E Chain E, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
pdb|2V5H|F Chain F, Controlling The Storage Of Nitrogen As Arginine: The
Complex Of Pii And Acetylglutamate Kinase From
Synechococcus Elongatus Pcc 7942
Length = 321
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 97/208 (46%), Gaps = 23/208 (11%)
Query: 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 69
+++DI FL +G+R V+V G +I+ L G E ++ R+TD++++ +
Sbjct: 70 VMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEV-------V 122
Query: 70 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 129
M++ +++ +I +++ VG G + A+ D G GEV
Sbjct: 123 EMVLVGRVNK-----DIVSRINTTGGRAVGFCGTDGRLVLARPH---DQEGIGFVGEVNS 174
Query: 130 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLIC------II 183
V+ + L+ G + ++S++ +G+ N N VA A A+ A+KLI I+
Sbjct: 175 VNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGIL 234
Query: 184 DGPILDESGHLIRFLTLQEADSLIRQRV 211
+ P ES LI L + ++ LI Q +
Sbjct: 235 EDPKRPES--LIPRLNIPQSRELIAQGI 260
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 304 RGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDLYE 340
+GV+ H++DG I LLLE+F G+GTM+ Y
Sbjct: 278 QGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYH 314
>pdb|2RD5|A Chain A, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
pdb|2RD5|B Chain B, Structural Basis For The Regulation Of N-Acetylglutamate
Kinase By Pii In Arabidopsis Thaliana
Length = 298
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 14/175 (8%)
Query: 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI 69
+V D+ L +G+R +LV G I++ L + A++ R+TD A ME +
Sbjct: 57 VVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTD----ATTMEI---V 109
Query: 70 RMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKK 129
M++ K++ N+ +++ VG+S G L A+ V + G GEV +
Sbjct: 110 SMVLVGKVNK-----NLVSLINAAGATAVGLSGHDGRLLTARP--VPNSAQLGFVGEVAR 162
Query: 130 VDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID 184
VD + +R +D G + +++++ SG+ N N VA A A+ A+KLI + D
Sbjct: 163 VDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTD 217
>pdb|2AP9|A Chain A, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|B Chain B, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|C Chain C, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|D Chain D, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|E Chain E, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
pdb|2AP9|F Chain F, Crystal Structure Of Acetylglutamate Kinase From
Mycobacterium Tuberculosis Cdc1551
Length = 299
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 17/176 (9%)
Query: 13 DIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM 72
D AFL + GI V+V G QI L G E + G +R+T E L A R +
Sbjct: 49 DXAFLRNCGIHPVVVHGGGPQITAXLRRLGIEGDFKGGFRVTTPEVLDVA-------RXV 101
Query: 73 IEAKLSPGPPICN-IRRHGDSSRWHEVGVSVASGNFLAAKRKGV-VDGV--DYGATGEVK 128
+ ++ G + N I HG + VG++ A R+ V VDGV D G G+V
Sbjct: 102 LFGQV--GRELVNLINAHGP----YAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVD 155
Query: 129 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID 184
+V+ + + G + ++S L + G V N N A A A A+ A+KL+ + D
Sbjct: 156 QVNTAAXLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLXLTD 211
>pdb|2GAN|A Chain A, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32.
pdb|2GAN|B Chain B, Crystal Structure Of A Putative Acetyltransferase From
Pyrococcus Horikoshii, Northeast Structural Genomics
Target Jr32
Length = 190
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 55/135 (40%), Gaps = 26/135 (19%)
Query: 343 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF----- 397
R D +G +++ +P ++ L + D Y +++ +II AL
Sbjct: 40 RKPNPNDFNGFREVYEPFLKF---------RLSQEFDELYTYQKDNRIIGTIALVYKRIK 90
Query: 398 ---------PFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLD---MLFLLT 445
EK G + V PE +G+G G LL++ K+ SLG D + F
Sbjct: 91 EKGIWWVPEELXNEKVGLIEFFVVDPEFQGKGIGSTLLEFAVKRLRSLGKDPYVVTFPNL 150
Query: 446 TRTADWFKSRGFREC 460
+ ++ +GFRE
Sbjct: 151 EAYSYYYXKKGFREI 165
>pdb|3L86|A Chain A, The Crystal Structure Of Smu.665 From Streptococcus Mutans
Ua159
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 21 GIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPG 80
G + V+V G I+KL+ E K + R+T + + A + ++ L
Sbjct: 66 GKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMVLVSHA---LLDLVGKNLQE- 121
Query: 81 PPICNIRRHGDSSRWHEVGVS-VASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERL 139
+R+ G S + + + V + ++L D YG G+V ++ + E L
Sbjct: 122 ----KLRQAGVSCQQLKSDIKHVVAADYL--------DKDTYGYVGDVTHINKRVIEEFL 169
Query: 140 DGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLT 199
+ + IL++LGYS G++LN N +ATA A+A+ ADKLI + + + E+G ++ +T
Sbjct: 170 ENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLENGAVLEKIT 229
Query: 200 LQEADSLIRQRVKQSEIAANYVKAV 224
+ +++++ + I A + +
Sbjct: 230 SHQ----VQEKIDTAVITAGMIPKI 250
>pdb|3U6U|A Chain A, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
pdb|3U6U|C Chain C, Crystal Structure Of The Putative Acetylglutamate Kinase
From Thermus Thermophilus
Length = 269
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 5 IPWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGR-----YRITDSESL 59
I + + +D A L G++ +LV G + +K+ GH ++L R+TD ++L
Sbjct: 12 INYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTL 71
Query: 60 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGV 119
I M+ L + +++ G ++ +G+S G +RK V V
Sbjct: 72 E--------IFEMVYCGLVNKRLVELLQKEGANA----IGLSGLDGRLFVGRRKTAVKYV 119
Query: 120 DYGA--------TGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACA 171
+ G TG V++V+ + L G L +L+ S E +N + ++A A
Sbjct: 120 ENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLA 179
Query: 172 LAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQ 209
A+ L+ + + P G L R+ + SL+R+
Sbjct: 180 TLYGAEALVYLSNVP-----GLLARY---PDEASLVRE 209
>pdb|3S7Y|A Chain A, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
pdb|3S7Y|X Chain X, Crystal Structure Of Mmnags In Space Group P3121 At 4.3 A
Resolution
Length = 461
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 14 IAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 73
+AFL +G+ V+V G Q+D L + + R+T E++ + +
Sbjct: 81 LAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAIPIIRDT------LT 134
Query: 74 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 133
+A L+ + IR G + +V G F A +VD G GE + + +
Sbjct: 135 QANLAL---VDAIRDAGGRA------AAVPRGVFEA----DIVDADKLGRVGEPRHIHLD 181
Query: 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPILDESG 192
+ G IL+ LG + G ++N N A A++ K++ + G +LDE G
Sbjct: 182 LVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDG 241
Query: 193 HLIRFLTL 200
++ + L
Sbjct: 242 DILSSINL 249
>pdb|3S6H|A Chain A, Crystal Structure Of Native MmnagsK
pdb|3S6H|B Chain B, Crystal Structure Of Native MmnagsK
pdb|3S6H|X Chain X, Crystal Structure Of Native MmnagsK
pdb|3S6H|Y Chain Y, Crystal Structure Of Native MmnagsK
Length = 460
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 20/188 (10%)
Query: 14 IAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 73
+AFL +G+ V+V G Q+D L + + R+T E++ + +
Sbjct: 81 LAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAIPIIRDT------LT 134
Query: 74 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 133
+A L+ + IR G + +V G F A +VD G GE + + +
Sbjct: 135 QANLAL---VDAIRDAGGRA------AAVPRGVFEA----DIVDADKLGRVGEPRHIHLD 181
Query: 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPILDESG 192
+ G IL+ LG + G ++N N A A++ K++ + G +LDE G
Sbjct: 182 LVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDG 241
Query: 193 HLIRFLTL 200
++ + L
Sbjct: 242 DILSSINL 249
>pdb|3S6G|A Chain A, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|B Chain B, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|X Chain X, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
pdb|3S6G|Y Chain Y, Crystal Structures Of Seleno-Substituted Mutant Mmnags In
Space Group P212121
Length = 460
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 14 IAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI 73
+AFL +G+ V+V G Q+D L + + R+T E+ + +
Sbjct: 81 LAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAXPIIRD------TLT 134
Query: 74 EAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVT 133
+A L+ + IR G + +V G F A +VD G GE + + +
Sbjct: 135 QANLAL---VDAIRDAGGRA------AAVPRGVFEA----DIVDADKLGRVGEPRHIHLD 181
Query: 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICII-DGPILDESG 192
+ G IL+ LG + G ++N N A A++ K++ + G +LDE G
Sbjct: 182 LVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDEDG 241
Query: 193 HLIRFLTL 200
++ + L
Sbjct: 242 DILSSINL 249
>pdb|3LOD|A Chain A, The Crystal Structure Of The Putative Acyl-Coa
N-Acyltransferase From Klebsiella Pneumoniae
Subsp.Pneumoniae Mgh 78578
Length = 162
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 387 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 433
+G+ + C A+ +E GE+ + + P+ RGQ G+KLL +E KA
Sbjct: 58 QGEAVGCGAIV-LSEEGFGEMKRVYIDPQHRGQQLGEKLLAALEAKA 103
>pdb|2OZG|A Chain A, Crystal Structure Of Gcn5-Related N-Acetyltransferase
(Yp_325469.1) From Anabaena Variabilis Atcc 29413 At
2.00 A Resolution
Length = 396
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Query: 378 LDSFYVVEREGQIIACAALFPFFKEKCGE------VAAIGVSPECRGQGQGDKLLDYI-- 429
L++F V+ RE ++ A+ P + G+ +AA+G++PE RG G L+ +
Sbjct: 47 LENFRVIYREQKVAGGLAILPXGQWWGGQRVPXAGIAAVGIAPEYRGDGAAIALIQHTLQ 106
Query: 430 EKKAASLGLDMLFLLTTRTADWFKSRGFREC 460
E + + +L+ T R ++ G+ +
Sbjct: 107 EISEQDIPISVLYPATQRL---YRKAGYEQA 134
>pdb|1GS5|A Chain A, N-Acetyl-L-Glutamate Kinase From Escherichia Coli
Complexed With Its Substrate N-Acetylglutamate And Its
Substrate Analog Amppnp
pdb|1OH9|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp, N-Acetyl-L-Glutamate And The
Transition-State Mimic Alf4-
pdb|1OHA|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Mgadp And N-Acetyl-L-Glutamate
pdb|1OHB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Complexed
With Adp And Sulphate
pdb|2WXB|A Chain A, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2WXB|B Chain B, Acetylglutamate Kinase From Escherichia Coli Free Of
Substrates
pdb|2X2W|A Chain A, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
pdb|2X2W|B Chain B, Acetylglutamate Kinase From Escherichia Coli Bound To N-
Acetyl-L-Glutamyl-5-Phosphate
Length = 258
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 139 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFL 198
L+ G L ++S++G + G+++N N + ATA A + AD ++ ILD G I +
Sbjct: 137 LENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEM 196
Query: 199 TLQEADSLIRQRVKQSEIAANYVKAVAEE-------DITCFGHSDSIGSVYSSQNGKTFS 251
T +A+ LI Q + + A+ DI + H++ + +++ NG
Sbjct: 197 TAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALF---NGMPMG 253
Query: 252 ERRIA 256
R +A
Sbjct: 254 TRILA 258
>pdb|3T7B|A Chain A, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
pdb|3T7B|B Chain B, Crystal Structure Of N-Acetyl-L-Glutamate Kinase From
Yersinia Pestis
Length = 260
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 14/165 (8%)
Query: 96 HEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSS 155
+ VG+ +A GN + ++D + G G+ + ++ L G I+S++G +
Sbjct: 100 NAVGLCLADGNTVTVT---LLDA-ELGHVGKAQPGSAALVQTLLAAGYXPIISSIGITVE 155
Query: 156 GEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQ------ 209
G++ N N + ATA A + AD ++ ILD G I T Q+A+ LI Q
Sbjct: 156 GQLXNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEXTAQKAEQLIAQGIITDG 215
Query: 210 RVKQSEIAANYVKAVAEE-DITCFGHSDSIGSVYSSQNGKTFSER 253
V + A + +++ DI + HS+ + +++ NG R
Sbjct: 216 XVVKVNAALDAARSLGRPVDIASWRHSEQLPALF---NGVPIGTR 257
>pdb|2AE6|A Chain A, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|B Chain B, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|C Chain C, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
pdb|2AE6|D Chain D, Crystal Structure Of Acetyltransferase Of Gnat Family From
Enterococcus Faecalis V583
Length = 166
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 409 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTAD----WFKSRGF 457
+IGVSP+ + QG G LL YI+ A G+ L L T +++ GF
Sbjct: 86 SIGVSPDFQDQGIGGSLLSYIKDXAEISGIHKLSLRVXATNQEAIRFYEKHGF 138
>pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium
Tuberculosis Guanylate Kinase
pdb|1ZNX|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gmp
pdb|1ZNY|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Guanylate
Kinase In Complex With Gdp
pdb|1ZNZ|A Chain A, Crystal Structure Of The Reduced Form Of Mycobacterium
Tuberculosis Guanylate Kinase In Complex With Gdp
Length = 207
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 110 AKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL--GYSSSGEVLNCNTYEVA 167
A R G VDGVDY +D TR ++ +D G L+ + + G SG + A
Sbjct: 57 APRPGEVDGVDY------HFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAA 110
Query: 168 TACALAIEAD 177
T + IE D
Sbjct: 111 TGVPVLIEVD 120
>pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium
Tuberculosis (Rv1389)
Length = 228
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 110 AKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL--GYSSSGEVLNCNTYEVA 167
A R G VDGVDY +D TR ++ +D G L+ + + G SG + A
Sbjct: 60 APRPGEVDGVDY------HFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAA 113
Query: 168 TACALAIEAD 177
T + IE D
Sbjct: 114 TGVPVLIEVD 123
>pdb|2PDO|A Chain A, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|B Chain B, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|C Chain C, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|D Chain D, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|E Chain E, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|F Chain F, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|G Chain G, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
pdb|2PDO|H Chain H, Crystal Structure Of The Putative Acetyltransferase Of
Gnat Family From Shigella Flexneri
Length = 144
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437
G +GV PE RG+G + LL+ +EKK + G
Sbjct: 70 GSAYYLGVHPEFRGRGIANALLNRLEKKLIARG 102
>pdb|1Y9K|A Chain A, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|B Chain B, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|C Chain C, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
pdb|1Y9K|D Chain D, Iaa Acetyltransferase From Bacillus Cereus Atcc 14579
Length = 157
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 382 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 441
YV ++ G +I L + K E+ I V+ +G+G G KLL + + A G L
Sbjct: 40 YVAKQGGSVIGVYVLLET-RPKTXEIXNIAVAEHLQGKGIGKKLLRHAVETAKGYGXSKL 98
Query: 442 FLLTTRTA----DWFKSRGFRECSIEM 464
+ T ++ ++ GFR SI+
Sbjct: 99 EVGTGNSSVSQLALYQKCGFRIFSIDF 125
>pdb|1GSJ|A Chain A, Selenomethionine Substituted N-Acetyl-L-Glutamate Kinase
From Escherichia Coli Complexed With Its Substrate N-
Acetyl-L-Glutamate And Its Substrate Analog Amppnp
Length = 258
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%)
Query: 139 LDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFL 198
L+ G L ++S++G + G++ N N + ATA A + AD ++ ILD G I
Sbjct: 137 LENGYLPVVSSIGVTDEGQLXNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEX 196
Query: 199 TLQEADSLIRQRV 211
T +A+ LI Q +
Sbjct: 197 TAAKAEQLIEQGI 209
>pdb|2XZM|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|Y Chain Y, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 293
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 271 WSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR-GVQRVHLLDGTIGG----VLLLELF 325
+ +QG + G+ RL LSE + F RR G ++ + G I G VL L++
Sbjct: 61 FPMKQGVMVRGRVRL-----LLSE-GHSCFTSRRSGFRKRKSVRGCIVGPDMRVLALQIV 114
Query: 326 KR-----DGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRT 370
K+ DG+ T+ R + L G+K+ P++ +++RRT
Sbjct: 115 KKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRT 164
>pdb|2REE|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REE|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula
pdb|2REF|A Chain A, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
pdb|2REF|B Chain B, Crystal Structure Of The Loading Gnatl Domain Of Cura From
Lyngbya Majuscula Soaked With Malonyl-Coa
Length = 224
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 406 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437
++ A+ + PE + QG GD+LL+++ + A +
Sbjct: 100 QLLAVNILPELQNQGLGDRLLEFMLQYCAQIS 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,092,094
Number of Sequences: 62578
Number of extensions: 560170
Number of successful extensions: 1351
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1310
Number of HSP's gapped (non-prelim): 46
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)