Query 010815
Match_columns 500
No_of_seqs 263 out of 3397
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:52:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02825 amino-acid N-acetyltr 100.0 1.7E-84 3.7E-89 687.7 48.8 480 7-487 34-515 (515)
2 TIGR01890 N-Ac-Glu-synth amino 100.0 1.3E-67 2.7E-72 557.9 43.8 395 7-486 34-429 (429)
3 PRK05279 N-acetylglutamate syn 100.0 2.1E-65 4.6E-70 543.1 43.7 398 7-486 42-441 (441)
4 COG0548 ArgB Acetylglutamate k 100.0 3E-51 6.6E-56 396.8 26.9 242 7-336 20-265 (265)
5 cd04237 AAK_NAGS-ABP AAK_NAGS- 100.0 1.3E-43 2.8E-48 353.8 26.8 244 7-334 35-280 (280)
6 CHL00202 argB acetylglutamate 100.0 3.1E-43 6.8E-48 351.9 27.1 238 7-335 41-283 (284)
7 cd04252 AAK_NAGK-fArgBP AAK_NA 100.0 9.9E-41 2.1E-45 327.9 26.3 232 6-334 13-248 (248)
8 PLN02512 acetylglutamate kinas 100.0 2.7E-40 5.9E-45 334.1 26.2 239 8-336 66-309 (309)
9 cd04238 AAK_NAGK-like AAK_NAGK 100.0 5.4E-39 1.2E-43 317.5 26.3 239 7-334 16-256 (256)
10 PRK00942 acetylglutamate kinas 100.0 1.1E-38 2.4E-43 319.7 26.8 241 7-337 41-283 (283)
11 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 1.1E-38 2.4E-43 319.0 26.2 240 7-334 32-279 (279)
12 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 1.8E-38 3.8E-43 313.5 25.6 232 7-334 13-257 (257)
13 PRK14058 acetylglutamate/acety 100.0 3.8E-38 8.2E-43 313.1 26.7 236 8-336 15-267 (268)
14 PRK04531 acetylglutamate kinas 100.0 1E-37 2.3E-42 323.4 27.7 287 5-433 50-339 (398)
15 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 3.6E-37 7.9E-42 303.8 25.3 234 7-334 16-252 (252)
16 PRK12352 putative carbamate ki 100.0 5.3E-37 1.1E-41 308.1 22.5 243 7-336 30-315 (316)
17 cd04236 AAK_NAGS-Urea AAK_NAGS 100.0 4.1E-37 8.9E-42 303.0 21.3 214 7-334 53-271 (271)
18 TIGR00761 argB acetylglutamate 100.0 4.3E-35 9.3E-40 285.4 25.4 187 6-208 14-203 (231)
19 KOG2436 Acetylglutamate kinase 100.0 9E-37 2E-41 311.7 11.1 401 4-425 108-518 (520)
20 cd04241 AAK_FomA-like AAK_FomA 100.0 4.7E-31 1E-35 260.4 19.1 223 7-334 25-252 (252)
21 PRK12686 carbamate kinase; Rev 100.0 4.7E-30 1E-34 256.3 18.6 237 8-335 29-311 (312)
22 PRK12454 carbamate kinase-like 100.0 6.1E-30 1.3E-34 254.9 18.6 241 7-336 30-313 (313)
23 cd02115 AAK Amino Acid Kinases 100.0 1.9E-28 4.2E-33 240.7 18.2 224 7-334 15-248 (248)
24 PRK09411 carbamate kinase; Rev 100.0 1.1E-27 2.4E-32 236.1 18.9 228 8-335 30-296 (297)
25 cd04235 AAK_CK AAK_CK: Carbama 100.0 3.3E-27 7.2E-32 235.7 18.6 238 7-335 27-308 (308)
26 COG0549 ArcC Carbamate kinase 99.9 4.6E-27 1E-31 225.8 17.8 242 7-336 28-312 (312)
27 PRK12353 putative amino acid k 99.9 9.3E-27 2E-31 235.4 20.3 244 7-336 28-314 (314)
28 TIGR00746 arcC carbamate kinas 99.9 9.9E-27 2.1E-31 233.6 20.2 239 7-335 28-309 (310)
29 COG1608 Predicted archaeal kin 99.9 1.8E-26 3.9E-31 217.5 16.3 222 7-335 26-251 (252)
30 PRK12354 carbamate kinase; Rev 99.9 1.1E-26 2.4E-31 231.0 15.3 235 8-338 29-302 (307)
31 PF00696 AA_kinase: Amino acid 99.9 8.9E-26 1.9E-30 221.0 20.0 176 7-208 19-211 (242)
32 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 3.9E-23 8.5E-28 206.4 17.0 231 7-335 33-284 (284)
33 PRK05429 gamma-glutamyl kinase 99.9 9.2E-23 2E-27 211.4 18.8 223 7-339 32-264 (372)
34 PRK13402 gamma-glutamyl kinase 99.9 3.9E-23 8.4E-28 212.7 15.5 222 7-338 29-259 (368)
35 cd04246 AAK_AK-DapG-like AAK_A 99.9 3.7E-22 8.1E-27 195.4 21.2 174 7-208 17-203 (239)
36 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 1.1E-22 2.4E-27 200.5 17.1 218 7-335 23-251 (251)
37 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 5E-22 1.1E-26 194.5 21.2 174 7-207 17-202 (239)
38 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 1E-21 2.3E-26 192.7 21.0 175 7-209 17-209 (244)
39 COG0263 ProB Glutamate 5-kinas 99.9 3.4E-22 7.4E-27 198.3 15.6 223 7-339 30-262 (369)
40 PRK12314 gamma-glutamyl kinase 99.9 5.1E-22 1.1E-26 197.0 16.6 220 6-337 32-265 (266)
41 PTZ00489 glutamate 5-kinase; P 99.9 2.2E-21 4.9E-26 191.4 18.1 218 7-337 31-260 (264)
42 TIGR01027 proB glutamate 5-kin 99.9 1.8E-21 4E-26 200.9 16.2 223 7-338 24-255 (363)
43 COG1246 ArgA N-acetylglutamate 99.8 3.1E-21 6.8E-26 171.5 10.1 144 341-484 2-146 (153)
44 cd04234 AAK_AK AAK_AK: Amino A 99.8 1.4E-19 3.1E-24 175.7 16.8 161 7-208 17-190 (227)
45 TIGR01092 P5CS delta l-pyrroli 99.8 8.6E-20 1.9E-24 203.7 15.1 232 7-338 31-277 (715)
46 cd04255 AAK_UMPK-MosAB AAK_UMP 99.8 4.8E-19 1E-23 175.0 18.1 150 7-206 50-213 (262)
47 PRK00358 pyrH uridylate kinase 99.8 1E-18 2.3E-23 170.2 19.4 199 7-335 25-231 (231)
48 cd04239 AAK_UMPK-like AAK_UMPK 99.8 8.1E-19 1.8E-23 170.7 18.4 199 7-335 23-229 (229)
49 PRK08210 aspartate kinase I; R 99.8 8.9E-19 1.9E-23 184.3 19.0 175 7-209 19-211 (403)
50 KOG1154 Gamma-glutamyl kinase 99.8 7.8E-20 1.7E-24 170.9 8.8 235 3-338 30-277 (285)
51 TIGR00656 asp_kin_monofn aspar 99.8 2.8E-18 6.1E-23 180.5 19.3 177 7-209 18-207 (401)
52 PRK06635 aspartate kinase; Rev 99.8 5.7E-18 1.2E-22 178.3 21.0 175 7-208 19-205 (404)
53 PRK08841 aspartate kinase; Val 99.8 2E-17 4.4E-22 172.5 22.1 177 6-208 18-205 (392)
54 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.8 5E-18 1.1E-22 165.4 16.5 199 7-335 25-231 (231)
55 PLN02418 delta-1-pyrroline-5-c 99.8 1.3E-17 2.7E-22 186.1 19.1 231 6-338 38-285 (718)
56 PRK14558 pyrH uridylate kinase 99.8 3.7E-17 8E-22 159.3 18.7 199 7-337 25-231 (231)
57 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.7 5.4E-17 1.2E-21 157.1 18.6 194 7-335 20-221 (221)
58 TIGR02076 pyrH_arch uridylate 99.7 6.6E-17 1.4E-21 156.5 19.2 196 7-335 19-221 (221)
59 TIGR02075 pyrH_bact uridylate 99.7 6E-17 1.3E-21 158.0 18.9 198 7-335 26-233 (233)
60 PRK07431 aspartate kinase; Pro 99.7 8.6E-17 1.9E-21 177.0 21.4 173 7-208 19-207 (587)
61 TIGR00657 asp_kinases aspartat 99.7 6.3E-16 1.4E-20 164.6 17.8 181 7-208 18-245 (441)
62 cd04240 AAK_UC AAK_UC: Unchara 99.7 2E-15 4.3E-20 144.1 17.7 73 131-203 80-157 (203)
63 PRK14557 pyrH uridylate kinase 99.6 2E-14 4.3E-19 140.9 20.9 202 7-339 29-241 (247)
64 PRK07757 acetyltransferase; Pr 99.6 8.3E-15 1.8E-19 132.7 16.0 131 340-472 2-132 (152)
65 PRK10146 aminoalkylphosphonic 99.6 1.2E-14 2.6E-19 130.1 11.9 125 339-463 3-139 (144)
66 PRK14556 pyrH uridylate kinase 99.6 9.5E-14 2.1E-18 135.1 18.1 202 7-336 40-248 (249)
67 PRK07922 N-acetylglutamate syn 99.6 6.4E-14 1.4E-18 130.0 14.6 127 338-466 4-131 (169)
68 PTZ00330 acetyltransferase; Pr 99.5 1.7E-13 3.6E-18 123.0 14.1 124 340-463 7-142 (147)
69 PRK12308 bifunctional arginino 99.5 4.1E-13 8.9E-18 148.4 15.9 133 340-474 464-596 (614)
70 cd04244 AAK_AK-LysC-like AAK_A 99.5 6.1E-13 1.3E-17 134.1 15.5 115 85-208 136-261 (298)
71 PF13527 Acetyltransf_9: Acety 99.5 3.5E-13 7.6E-18 118.1 10.7 119 341-460 1-127 (127)
72 PRK03624 putative acetyltransf 99.5 1E-12 2.2E-17 116.0 13.2 121 339-464 2-132 (140)
73 PRK06291 aspartate kinase; Pro 99.5 1.8E-12 3.8E-17 138.9 17.3 129 60-207 123-264 (465)
74 TIGR03827 GNAT_ablB putative b 99.4 1.2E-12 2.6E-17 130.3 14.7 123 340-463 116-246 (266)
75 PF13673 Acetyltransf_10: Acet 99.4 4.5E-12 9.7E-17 109.0 14.0 103 349-457 1-117 (117)
76 KOG3216 Diamine acetyltransfer 99.4 5.9E-12 1.3E-16 111.1 13.6 124 339-462 3-146 (163)
77 PF00583 Acetyltransf_1: Acety 99.4 4.5E-12 9.7E-17 102.2 11.3 75 384-458 1-83 (83)
78 PLN02706 glucosamine 6-phospha 99.4 3.5E-12 7.6E-17 115.2 11.2 121 340-463 7-145 (150)
79 TIGR02382 wecD_rffC TDP-D-fuco 99.4 6.9E-12 1.5E-16 118.5 13.7 123 340-463 44-186 (191)
80 PHA00673 acetyltransferase dom 99.4 7.4E-12 1.6E-16 113.2 12.9 120 344-463 11-147 (154)
81 PRK08373 aspartate kinase; Val 99.4 9.9E-11 2.1E-15 119.7 22.0 178 7-207 19-242 (341)
82 KOG3139 N-acetyltransferase [G 99.4 8.5E-12 1.8E-16 111.4 12.2 125 349-484 26-161 (165)
83 PRK09831 putative acyltransfer 99.4 9.4E-12 2E-16 112.4 12.8 114 341-464 2-128 (147)
84 PRK09491 rimI ribosomal-protei 99.4 1.6E-11 3.5E-16 110.4 14.3 117 340-462 2-125 (146)
85 PRK10975 TDP-fucosamine acetyl 99.4 1.6E-11 3.4E-16 116.3 14.9 123 340-463 47-189 (194)
86 TIGR02406 ectoine_EctA L-2,4-d 99.3 1.2E-11 2.7E-16 113.2 13.4 119 342-460 1-126 (157)
87 PRK10140 putative acetyltransf 99.3 1.7E-11 3.8E-16 111.5 14.1 123 340-463 4-142 (162)
88 PF13420 Acetyltransf_4: Acety 99.3 4.6E-11 1E-15 108.2 15.7 121 342-463 1-140 (155)
89 PF13523 Acetyltransf_8: Acety 99.3 1.4E-11 3E-16 111.6 12.2 126 342-467 1-146 (152)
90 COG0528 PyrH Uridylate kinase 99.3 1.9E-10 4E-15 109.5 19.5 199 7-335 30-237 (238)
91 PRK10314 putative acyltransfer 99.3 2.1E-11 4.7E-16 111.2 11.8 120 342-463 9-135 (153)
92 TIGR01575 rimI ribosomal-prote 99.3 2.7E-11 5.8E-16 105.7 11.6 109 349-463 1-117 (131)
93 PF13508 Acetyltransf_7: Acety 99.3 4.6E-11 1E-15 96.1 11.9 75 380-459 4-79 (79)
94 COG3153 Predicted acetyltransf 99.2 9.7E-11 2.1E-15 107.7 13.1 126 339-467 3-136 (171)
95 COG1247 Sortase and related ac 99.2 1.9E-10 4.2E-15 105.5 15.0 124 340-464 2-145 (169)
96 TIGR03103 trio_acet_GNAT GNAT- 99.2 7.7E-11 1.7E-15 128.5 13.2 122 340-465 83-220 (547)
97 PRK10514 putative acetyltransf 99.2 2E-10 4.4E-15 102.8 12.7 114 340-464 2-128 (145)
98 TIGR01686 FkbH FkbH-like domai 99.2 2.3E-10 5.1E-15 116.9 14.4 122 337-460 184-319 (320)
99 COG0527 LysC Aspartokinases [A 99.2 8.2E-10 1.8E-14 116.8 18.1 183 6-209 18-252 (447)
100 COG0456 RimI Acetyltransferase 99.2 2.3E-10 4.9E-15 105.8 11.5 125 337-463 9-155 (177)
101 TIGR02078 AspKin_pair Pyrococc 99.1 1.4E-09 3E-14 110.7 17.1 78 129-206 144-231 (327)
102 PRK01346 hypothetical protein; 99.1 4.7E-10 1E-14 118.5 13.8 124 337-462 4-136 (411)
103 cd04259 AAK_AK-DapDC AAK_AK-Da 99.1 2.5E-09 5.5E-14 107.6 17.9 78 131-208 169-258 (295)
104 PRK10151 ribosomal-protein-L7/ 99.1 1.9E-09 4E-14 100.4 15.7 125 338-463 9-156 (179)
105 PRK15130 spermidine N1-acetylt 99.1 1.4E-09 2.9E-14 102.0 14.0 123 340-463 7-146 (186)
106 PRK10562 putative acetyltransf 99.1 1.7E-09 3.6E-14 97.3 13.7 114 341-464 1-127 (145)
107 KOG3396 Glucosamine-phosphate 99.1 5.8E-10 1.3E-14 96.6 10.1 120 340-462 7-144 (150)
108 TIGR03585 PseH pseudaminic aci 99.1 1.7E-09 3.8E-14 97.8 13.3 121 341-463 2-139 (156)
109 PHA01807 hypothetical protein 99.1 2.4E-09 5.2E-14 97.5 13.9 117 344-463 8-142 (153)
110 TIGR03448 mycothiol_MshD mycot 99.1 3.2E-09 6.9E-14 106.7 15.8 123 340-462 150-288 (292)
111 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.1 7.1E-09 1.5E-13 104.4 17.6 109 85-207 135-256 (294)
112 cd02169 Citrate_lyase_ligase C 99.0 8.1E-10 1.8E-14 111.1 10.4 76 380-461 7-83 (297)
113 TIGR03448 mycothiol_MshD mycot 99.0 8.3E-09 1.8E-13 103.7 16.3 114 343-462 4-128 (292)
114 cd04243 AAK_AK-HSDH-like AAK_A 99.0 9.5E-09 2.1E-13 103.5 16.2 78 132-209 168-257 (293)
115 PRK13688 hypothetical protein; 99.0 2.6E-09 5.7E-14 97.7 10.4 106 341-463 19-134 (156)
116 PF13302 Acetyltransf_3: Acety 99.0 7.3E-09 1.6E-13 91.9 12.8 118 340-458 2-142 (142)
117 PRK10809 ribosomal-protein-S5- 99.0 9.7E-09 2.1E-13 96.9 13.9 123 340-463 18-167 (194)
118 TIGR00124 cit_ly_ligase [citra 99.0 1.2E-08 2.7E-13 104.2 14.9 82 376-463 28-110 (332)
119 cd04245 AAK_AKiii-YclM-BS AAK_ 98.9 7.9E-08 1.7E-12 96.4 16.6 130 58-208 111-251 (288)
120 PRK09084 aspartate kinase III; 98.8 6.9E-08 1.5E-12 103.0 16.2 126 60-208 110-251 (448)
121 PRK05925 aspartate kinase; Pro 98.8 4.9E-08 1.1E-12 103.6 14.4 77 132-208 155-242 (440)
122 PRK08961 bifunctional aspartat 98.8 5.5E-08 1.2E-12 111.8 14.2 79 130-208 177-267 (861)
123 cd04247 AAK_AK-Hom3 AAK_AK-Hom 98.8 1.1E-07 2.4E-12 96.1 14.5 69 141-209 189-268 (306)
124 COG2054 Uncharacterized archae 98.7 2.2E-07 4.8E-12 84.7 13.7 113 140-336 91-210 (212)
125 KOG3235 Subunit of the major N 98.7 6.5E-09 1.4E-13 92.3 3.7 124 340-463 2-136 (193)
126 COG2153 ElaA Predicted acyltra 98.7 5.3E-08 1.1E-12 85.7 9.2 92 376-467 47-141 (155)
127 cd04258 AAK_AKiii-LysC-EC AAK_ 98.7 5.2E-07 1.1E-11 90.7 17.1 70 140-209 176-256 (292)
128 PRK09034 aspartate kinase; Rev 98.7 7.5E-07 1.6E-11 95.3 18.9 132 57-209 110-252 (454)
129 PRK09436 thrA bifunctional asp 98.6 6.4E-07 1.4E-11 102.2 15.1 126 60-207 120-258 (819)
130 KOG3234 Acetyltransferase, (GN 98.6 1.9E-07 4.2E-12 83.1 8.2 121 341-461 3-130 (173)
131 KOG2488 Acetyltransferase (GNA 98.6 5.6E-07 1.2E-11 82.7 11.2 116 348-464 54-184 (202)
132 PF08445 FR47: FR47-like prote 98.6 8E-07 1.7E-11 73.0 11.0 58 405-463 22-83 (86)
133 KOG3138 Predicted N-acetyltran 98.5 1.5E-07 3.2E-12 87.7 5.7 149 340-495 17-180 (187)
134 KOG3397 Acetyltransferases [Ge 98.5 1E-06 2.2E-11 79.6 9.4 77 385-461 63-140 (225)
135 PLN02551 aspartokinase 98.4 5.3E-06 1.1E-10 89.9 15.8 133 56-209 162-311 (521)
136 COG3393 Predicted acetyltransf 98.4 1.5E-06 3.3E-11 84.2 10.1 79 384-463 182-263 (268)
137 cd04301 NAT_SF N-Acyltransfera 98.4 2.3E-06 5.1E-11 63.4 8.6 62 382-443 2-64 (65)
138 COG3981 Predicted acetyltransf 98.4 3.2E-06 6.9E-11 76.9 10.4 123 340-463 4-160 (174)
139 PF14542 Acetyltransf_CG: GCN5 98.3 8.9E-06 1.9E-10 65.5 10.0 71 382-455 2-72 (78)
140 TIGR01211 ELP3 histone acetylt 98.2 6.9E-06 1.5E-10 88.8 11.1 77 387-463 422-517 (522)
141 COG1670 RimL Acetyltransferase 98.2 1.5E-05 3.1E-10 73.4 11.9 75 388-463 77-159 (187)
142 PRK09466 metL bifunctional asp 98.2 2E-05 4.4E-10 89.6 14.4 128 60-210 123-264 (810)
143 PF13718 GNAT_acetyltr_2: GNAT 98.1 3.5E-05 7.6E-10 72.7 11.8 88 379-466 27-180 (196)
144 COG3053 CitC Citrate lyase syn 98.1 3.6E-05 7.8E-10 75.3 11.5 109 341-462 5-115 (352)
145 PRK09181 aspartate kinase; Val 97.9 0.00027 5.9E-09 75.9 16.3 78 132-209 182-274 (475)
146 cd04248 AAK_AK-Ectoine AAK_AK- 97.9 0.00046 1E-08 69.4 15.7 77 133-209 177-268 (304)
147 COG3818 Predicted acetyltransf 97.8 9.2E-05 2E-09 64.1 7.5 127 339-467 7-153 (167)
148 PF12568 DUF3749: Acetyltransf 97.8 0.00018 3.9E-09 62.7 9.3 106 342-460 7-123 (128)
149 PF12746 GNAT_acetyltran: GNAT 97.6 0.00086 1.9E-08 66.5 13.0 92 369-463 156-248 (265)
150 COG4552 Eis Predicted acetyltr 97.5 0.00028 6.2E-09 71.0 8.3 83 379-462 39-127 (389)
151 COG1444 Predicted P-loop ATPas 97.5 0.0012 2.6E-08 73.6 13.5 59 404-463 531-592 (758)
152 COG2388 Predicted acetyltransf 97.5 0.00036 7.7E-09 58.6 6.6 61 379-440 15-75 (99)
153 PF04768 DUF619: Protein of un 97.4 0.00031 6.8E-09 65.0 6.2 132 320-459 2-143 (170)
154 PF08444 Gly_acyl_tr_C: Aralky 97.4 0.00061 1.3E-08 55.8 6.7 71 384-460 4-78 (89)
155 PF00765 Autoind_synth: Autoin 97.3 0.0034 7.4E-08 58.9 11.7 116 346-461 6-154 (182)
156 PF04958 AstA: Arginine N-succ 97.2 0.0035 7.6E-08 64.0 11.4 145 340-488 2-210 (342)
157 COG0454 WecD Histone acetyltra 97.0 0.001 2.2E-08 54.0 5.1 44 410-457 87-130 (156)
158 KOG4144 Arylalkylamine N-acety 96.9 0.00063 1.4E-08 60.7 2.9 60 403-462 100-161 (190)
159 TIGR03694 exosort_acyl putativ 96.9 0.009 2E-07 58.7 11.0 120 341-460 9-196 (241)
160 PRK13834 putative autoinducer 96.8 0.018 3.9E-07 55.2 12.5 114 347-460 15-163 (207)
161 PF13480 Acetyltransf_6: Acety 96.7 0.026 5.7E-07 49.4 11.8 98 346-445 27-135 (142)
162 PRK10456 arginine succinyltran 96.6 0.0061 1.3E-07 62.1 7.9 145 340-488 2-208 (344)
163 TIGR03245 arg_AOST_alph argini 96.4 0.012 2.6E-07 59.8 8.4 144 341-488 1-207 (336)
164 TIGR03244 arg_catab_AstA argin 96.4 0.0093 2E-07 60.7 7.5 122 341-462 1-184 (336)
165 TIGR03243 arg_catab_AOST argin 96.4 0.015 3.2E-07 59.2 8.8 144 341-488 1-206 (335)
166 PF06852 DUF1248: Protein of u 96.3 0.035 7.6E-07 51.9 10.0 77 385-462 53-137 (181)
167 COG5630 ARG2 Acetylglutamate s 96.3 0.015 3.2E-07 59.1 7.9 112 347-463 344-461 (495)
168 COG3916 LasI N-acyl-L-homoseri 95.9 0.12 2.6E-06 49.0 11.7 114 347-460 14-161 (209)
169 KOG4135 Predicted phosphogluco 95.8 0.027 5.8E-07 50.2 6.3 122 341-462 15-170 (185)
170 COG5628 Predicted acetyltransf 95.2 0.14 3.1E-06 44.0 8.5 78 379-458 37-119 (143)
171 COG3882 FkbH Predicted enzyme 94.8 0.059 1.3E-06 56.9 6.2 123 337-461 411-549 (574)
172 COG3375 Uncharacterized conser 94.5 0.28 6E-06 46.9 9.5 120 341-460 4-130 (266)
173 COG1243 ELP3 Histone acetyltra 93.7 0.085 1.8E-06 55.4 4.9 51 413-463 459-510 (515)
174 PF01233 NMT: Myristoyl-CoA:pr 93.1 0.54 1.2E-05 42.9 8.3 97 346-442 33-148 (162)
175 PF13880 Acetyltransf_13: ESCO 92.3 0.18 3.8E-06 39.6 3.7 30 404-433 5-34 (70)
176 COG3138 AstA Arginine/ornithin 92.2 0.32 6.9E-06 48.1 6.1 88 340-427 2-142 (336)
177 cd04264 DUF619-NAGS DUF619 dom 91.4 0.73 1.6E-05 38.8 6.6 51 382-432 11-62 (99)
178 PF01853 MOZ_SAS: MOZ/SAS fami 91.2 1.5 3.2E-05 41.2 9.1 49 389-438 66-114 (188)
179 PF05301 Mec-17: Touch recepto 90.4 1.7 3.7E-05 37.6 8.0 47 407-454 49-97 (120)
180 PF02799 NMT_C: Myristoyl-CoA: 90.1 2.3 5E-05 40.0 9.4 116 341-461 30-164 (190)
181 KOG2036 Predicted P-loop ATPas 90.1 0.7 1.5E-05 51.0 6.7 30 405-434 615-644 (1011)
182 PF04377 ATE_C: Arginine-tRNA- 89.9 5.1 0.00011 35.4 10.9 61 382-444 42-102 (128)
183 KOG0456 Aspartate kinase [Amin 89.8 1.2 2.6E-05 46.0 7.7 68 140-207 257-336 (559)
184 cd04265 DUF619-NAGS-U DUF619 d 89.5 1.3 2.9E-05 37.2 6.6 50 384-433 14-63 (99)
185 TIGR03019 pepcterm_femAB FemAB 89.2 2.8 6.1E-05 42.9 10.3 81 381-463 197-282 (330)
186 KOG2779 N-myristoyl transferas 89.0 3.3 7.1E-05 42.3 10.1 116 341-461 262-396 (421)
187 PRK14852 hypothetical protein; 89.0 2.7 5.9E-05 49.0 10.7 123 341-463 30-182 (989)
188 PTZ00064 histone acetyltransfe 88.9 1.2 2.5E-05 47.6 7.1 102 328-437 307-417 (552)
189 PLN03238 probable histone acet 87.5 1.3 2.8E-05 44.2 6.1 49 388-437 140-188 (290)
190 PRK01305 arginyl-tRNA-protein 86.9 11 0.00024 36.9 12.2 76 368-445 127-208 (240)
191 COG2401 ABC-type ATPase fused 86.7 0.59 1.3E-05 49.0 3.4 57 404-460 241-306 (593)
192 KOG2535 RNA polymerase II elon 86.5 0.79 1.7E-05 46.5 4.0 50 414-463 497-548 (554)
193 PLN03239 histone acetyltransfe 85.7 1.7 3.7E-05 44.6 5.9 101 329-437 137-246 (351)
194 PHA01733 hypothetical protein 83.1 4.1 8.9E-05 36.9 6.6 119 341-462 4-132 (153)
195 PLN00104 MYST -like histone ac 82.8 1.5 3.2E-05 46.6 4.2 49 388-437 291-339 (450)
196 TIGR03827 GNAT_ablB putative b 82.6 7.4 0.00016 38.5 9.1 65 420-492 21-86 (266)
197 PF13444 Acetyltransf_5: Acety 81.7 1.7 3.7E-05 36.4 3.5 47 380-426 32-100 (101)
198 PF12261 T_hemolysin: Thermost 77.6 13 0.00028 34.8 8.3 112 347-467 7-147 (179)
199 PF09924 DUF2156: Uncharacteri 76.5 18 0.0004 36.3 9.9 65 380-445 181-246 (299)
200 KOG2747 Histone acetyltransfer 75.6 3.4 7.3E-05 43.1 4.2 101 329-437 186-293 (396)
201 KOG3698 Hyaluronoglucosaminida 72.8 7.4 0.00016 42.2 5.9 127 337-464 677-880 (891)
202 PF02474 NodA: Nodulation prot 72.6 8.4 0.00018 35.6 5.4 52 404-456 85-137 (196)
203 PF04339 DUF482: Protein of un 68.9 55 0.0012 34.3 11.3 114 345-463 210-330 (370)
204 KOG2779 N-myristoyl transferas 64.9 13 0.00027 38.2 5.4 56 385-440 142-203 (421)
205 PHA00432 internal virion prote 64.4 19 0.00041 32.1 5.9 112 342-462 3-121 (137)
206 PF11124 Pho86: Inorganic phos 59.7 57 0.0012 33.0 8.9 91 378-468 168-278 (304)
207 KOG4601 Uncharacterized conser 57.8 23 0.00049 34.3 5.5 49 405-454 109-159 (264)
208 cd04266 DUF619-NAGS-FABP DUF61 56.1 45 0.00098 28.5 6.5 30 402-431 37-67 (108)
209 COG5027 SAS2 Histone acetyltra 54.5 5.8 0.00013 40.5 1.0 98 329-434 186-292 (395)
210 KOG3014 Protein involved in es 49.5 60 0.0013 31.8 7.0 31 403-433 182-212 (257)
211 KOG2696 Histone acetyltransfer 48.3 30 0.00065 35.8 4.9 56 389-444 199-258 (403)
212 PF09390 DUF1999: Protein of u 48.0 2.1E+02 0.0046 25.8 11.9 121 340-461 1-140 (161)
213 COG2935 Putative arginyl-tRNA: 46.1 2.9E+02 0.0063 27.2 11.0 57 387-445 159-215 (253)
214 PRK02983 lysS lysyl-tRNA synth 44.8 1.2E+02 0.0026 36.6 10.0 59 385-445 427-485 (1094)
215 COG2898 Uncharacterized conser 40.5 79 0.0017 34.7 7.0 65 380-445 394-458 (538)
216 PRK00756 acyltransferase NodA; 40.2 68 0.0015 29.6 5.4 42 403-445 84-125 (196)
217 COG5092 NMT1 N-myristoyl trans 39.4 68 0.0015 32.6 5.8 54 387-440 142-201 (451)
218 COG5092 NMT1 N-myristoyl trans 39.4 1.3E+02 0.0028 30.6 7.7 122 340-461 259-413 (451)
219 cd08353 Glo_EDI_BRP_like_7 Thi 37.6 90 0.002 26.9 6.0 29 438-466 4-35 (142)
220 PHA02769 hypothetical protein; 37.4 27 0.00058 30.0 2.3 43 422-464 94-141 (154)
221 cd03173 DUF619-like DUF619 dom 32.4 2E+02 0.0044 24.1 6.8 60 387-452 17-79 (98)
222 cd07235 MRD Mitomycin C resist 27.7 65 0.0014 26.8 3.3 22 440-461 3-27 (122)
223 PRK08535 translation initiatio 26.8 6.5E+02 0.014 25.5 10.8 50 134-184 181-230 (310)
224 TIGR00511 ribulose_e2b2 ribose 26.1 6.9E+02 0.015 25.3 10.8 48 134-181 176-223 (301)
225 PF10686 DUF2493: Protein of u 25.7 1.4E+02 0.003 23.4 4.4 32 8-39 18-50 (71)
226 TIGR02990 ectoine_eutA ectoine 24.7 1.6E+02 0.0034 28.9 5.6 41 425-465 107-154 (239)
227 KOG1472 Histone acetyltransfer 23.9 16 0.00034 41.3 -1.7 81 380-460 420-503 (720)
228 COG2247 LytB Putative cell wal 23.4 5.5E+02 0.012 26.4 9.1 35 17-51 71-109 (337)
229 PF01918 Alba: Alba; InterPro 22.6 1.4E+02 0.003 22.9 3.9 34 5-38 9-46 (70)
230 PF02633 Creatininase: Creatin 22.0 4.1E+02 0.0089 25.6 8.0 74 131-207 5-88 (237)
231 COG1658 Small primase-like pro 22.0 1.3E+02 0.0028 26.5 4.0 53 131-196 20-72 (127)
232 PF01872 RibD_C: RibD C-termin 21.6 1E+02 0.0023 28.7 3.6 31 10-40 123-153 (200)
233 COG0560 SerB Phosphoserine pho 21.3 1.3E+02 0.0029 28.7 4.3 38 11-48 83-121 (212)
No 1
>PLN02825 amino-acid N-acetyltransferase
Probab=100.00 E-value=1.7e-84 Score=687.69 Aligned_cols=480 Identities=79% Similarity=1.218 Sum_probs=437.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
|.++++||++|++.|+++||||||||||+.++++.|++++|++|+|+||+++|+++++++|.+|..|++.||+|++++.|
T Consensus 34 ~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l 113 (515)
T PLN02825 34 LDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQASMEAAGKIRVMIEAKLSPGPSIPNL 113 (515)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccchhHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
+++|+++|++.+++++.||+|++++|.|+++++|+||+|+|++||++.|+.+|++|+|||++|++++++|+.+|+|+|++
T Consensus 114 ~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~v 193 (515)
T PLN02825 114 RRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEV 193 (515)
T ss_pred HhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHH
Confidence 99999988888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEecCcccCCCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCC
Q 010815 167 ATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQN 246 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (500)
|+++|.+|+|||||||||+++++.+|++|++++.+|++++++++..++.++|++.||+.+.+-+--.+-+..+..-.+-+
T Consensus 194 A~avA~aL~A~KLI~ltd~~~~~~~g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
T PLN02825 194 ATACALAIGADKLICIVDGPILDENGRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNN 273 (515)
T ss_pred HHHHHHHcCCCeEEEEeCcceecCCCCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhccccccccccccccccccccccc
Confidence 99999999999999999999888999999999999999999877778889999999999885332111110000000011
Q ss_pred CCccch--hhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehh
Q 010815 247 GKTFSE--RRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLEL 324 (500)
Q Consensus 247 ~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l 324 (500)
++.+-. +....|.++++|+++.|+ +.+|+|++||++++++...++.||.+|+.||++||+|+||+|+..+++||.||
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~el 352 (515)
T PLN02825 274 GRGFWGSGSATDSFQNGVGFDNGNGL-SGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLEL 352 (515)
T ss_pred cccccccccccccccccccccCcccc-cccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHh
Confidence 111111 233346777888876664 78899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcceeecccccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCe
Q 010815 325 FKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKC 404 (500)
Q Consensus 325 ~~~~~~GT~i~~d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~ 404 (500)
|+++|.||+|++++|+.||+++.+|++.|.+|+++....+....++.+.+..++..+++++.|++++||+.+.++.....
T Consensus 353 ft~dg~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~lv~rs~e~le~ei~~f~V~e~Dg~IVG~aal~~~~~~~~ 432 (515)
T PLN02825 353 FTRDGMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGILVRRTDEELLRALDSFVVVEREGSIIACAALFPFFEEKC 432 (515)
T ss_pred hccCCceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCCCcCCCHHHHHhcCCcEEEEEECCEEEEEEEEEeecCCCc
Confidence 99999999999999999999999999999999999988888888899999999989999999999999999987776678
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEE
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMK 484 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~k 484 (500)
++|.+++|+|+|||+|+|++|+++++++|+++|++++++.++++.+||+|+||+..+...+|..++..|+++|+||+|||
T Consensus 433 aEI~~laV~P~yRGkGiG~~LL~~le~~Ar~~G~~~L~Lltt~a~~fY~k~GF~~~~~~~lp~~~~~~yn~~r~sk~~~k 512 (515)
T PLN02825 433 GEVAAIAVSPECRGQGQGDKLLDYIEKKAASLGLEKLFLLTTRTADWFVRRGFSECSIESLPEARRKRINLSRGSKYYMK 512 (515)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEeCcHHHHHHHCCCEEeChhhCCHHHHhhcCccCCcEEEEE
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecC
Q 010815 485 KLL 487 (500)
Q Consensus 485 kll 487 (500)
++.
T Consensus 513 ~l~ 515 (515)
T PLN02825 513 KLL 515 (515)
T ss_pred ecC
Confidence 873
No 2
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=100.00 E-value=1.3e-67 Score=557.87 Aligned_cols=395 Identities=43% Similarity=0.721 Sum_probs=360.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++||+.|+..|.++||||||||+++.+++++|+++++++|+|+|++++|+++.++++.+|..|++.|++
T Consensus 34 ~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~vn~~l~~~l~~------- 106 (429)
T TIGR01890 34 LGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIEARLSM------- 106 (429)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHHHHHhChHHHHHHHHHHh-------
Confidence 5689999999999999999999999999999999999999999999999999999966799999999997643
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
++-..+.+.+++++.|++++.+++.++.+++|+|++|+|++||++.|+.+|++|+|||++|++++.+|+.+|+|+|++
T Consensus 107 --~~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~ 184 (429)
T TIGR01890 107 --SLSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDV 184 (429)
T ss_pred --cCCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHH
Confidence 311112335679999999999999987788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC-CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccC
Q 010815 167 ATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQ 245 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (500)
|++||.+|+|++|+|+|||||+. .+|++|++|+.+|+++++... .|
T Consensus 185 A~~lA~al~a~kli~ltdv~Gv~~~~g~~i~~i~~~~~~~l~~~~-------------------------------~~-- 231 (429)
T TIGR01890 185 ATSVAISLKADKLIYFTLSPGISDPDGTLAAELSPQEVESLAERL-------------------------------GS-- 231 (429)
T ss_pred HHHHHHHcCCCEEEEEeCCCcccCCCCCCcccCCHHHHHHHHHhc-------------------------------cC--
Confidence 99999999999999999999985 479999999999999987541 11
Q ss_pred CCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhh
Q 010815 246 NGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELF 325 (500)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~ 325 (500)
|| |.+||++|..|++.||+++||+||+.|++++.++|
T Consensus 232 -----------------------~~--------------------~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~ 268 (429)
T TIGR01890 232 -----------------------ET--------------------TRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELF 268 (429)
T ss_pred -----------------------CC--------------------cHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHh
Confidence 20 59999999999999999999999999999999999
Q ss_pred hcCCCcceeecccccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeE
Q 010815 326 KRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCG 405 (500)
Q Consensus 326 ~~~~~GT~i~~d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~ 405 (500)
++++.||+|.+++|+.||+++.+|++.+.+++++....++..+++.+.+..++..+++++++++++||+.+.+..+...+
T Consensus 269 ~~~g~GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~V~~~dg~iVG~~~~~~~~~~~~~ 348 (429)
T TIGR01890 269 TRDGIGTSISKEAFESIRQATIDDIGGIAALIRPLEEQGILVRRSREYLEREISEFSIIEHDGNIIGCAALYPYAEEDCG 348 (429)
T ss_pred cCCCCcceEeccchhheEECCHHHHHHHHHHHHHHHHcCCchhhhHHHHHhhcCcEEEEEECCEEEEEEEEEecCCCCeE
Confidence 99999999999999999999999999999999887777776677788888888888889999999999999876656678
Q ss_pred EEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEe
Q 010815 406 EVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKK 485 (500)
Q Consensus 406 ~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kk 485 (500)
++..++|+|+|||+|+|++||++++++|+++|++.+++.++.+.+||+|+||+.++...+|..++..|+++|++++||++
T Consensus 349 ~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~~G~~~l~v~~~~a~~fY~k~GF~~~g~~~l~~~~~~~~~~~r~~~~~~~~ 428 (429)
T TIGR01890 349 EMACLAVSPEYQDGGRGERLLAHIEDRARQMGISRLFVLTTRTGHWFRERGFQTASVDELPEARRKLYNYQRNSKILMKR 428 (429)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEeecchHHHHHHCCCEECChhhCCHHHHHHhcccccCceeeec
Confidence 99999999999999999999999999999999999887777789999999999999999999999999999999999997
Q ss_pred c
Q 010815 486 L 486 (500)
Q Consensus 486 l 486 (500)
+
T Consensus 429 ~ 429 (429)
T TIGR01890 429 L 429 (429)
T ss_pred C
Confidence 5
No 3
>PRK05279 N-acetylglutamate synthase; Validated
Probab=100.00 E-value=2.1e-65 Score=543.15 Aligned_cols=398 Identities=46% Similarity=0.737 Sum_probs=358.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++||+.|...|.++||||||||+++.++.++|+++++++|+|+|++++++++.++.+.+|..|+++|++
T Consensus 42 ~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~l~~------- 114 (441)
T PRK05279 42 FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALECVKQAAGELRLDIEARLSM------- 114 (441)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHHHHHHHHHHHHHHHHHHHhc-------
Confidence 4689999999999999999999999999999999999999999999999999999966679999999997643
Q ss_pred hhcCCCC-CccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 87 RRHGDSS-RWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~-~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|++. +++..++++.+++++.+++.++.++.|+|++|+++.+|.+.|+.||++|+|||++|++.++.|+.+|+|+|+
T Consensus 115 ---g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~ 191 (441)
T PRK05279 115 ---GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEE 191 (441)
T ss_pred ---cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHH
Confidence 4431 112445788899999999998878899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccccc
Q 010815 166 VATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSS 244 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (500)
+|++||.+|+|++|+|+|||||+. +++++|++++.+++++++..-. . +.+
T Consensus 192 ~a~~lA~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~~~-~-------------------------~~~--- 242 (441)
T PRK05279 192 VATQVAIALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEALE-D-------------------------GDY--- 242 (441)
T ss_pred HHHHHHHHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhhhh-c-------------------------CCC---
Confidence 999999999999999999999985 5799999999999988874210 0 001
Q ss_pred CCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehh
Q 010815 245 QNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLEL 324 (500)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l 324 (500)
+|| |.+||++|..++++|++++||+|++.|++++.++
T Consensus 243 ----------------------------------~gg---------M~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l 279 (441)
T PRK05279 243 ----------------------------------NSG---------TARFLRAAVKACRGGVRRSHLISYAEDGALLQEL 279 (441)
T ss_pred ----------------------------------Ccc---------HHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHH
Confidence 223 9999999999999999999999999999999999
Q ss_pred hhcCCCcceeecccccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCe
Q 010815 325 FKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKC 404 (500)
Q Consensus 325 ~~~~~~GT~i~~d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~ 404 (500)
|+.++.||+|+++.|+.||+++.+|++.+.+++.+.....+..+++.+.+..+...+++++++++++||+.+.+......
T Consensus 280 ~~~~g~GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~va~~dg~iVG~~~~~~~~~~~~ 359 (441)
T PRK05279 280 FTRDGIGTMIVMESLEQLRRATIDDVGGILELIRPLEEQGILVRRSREQLEREIDKFTVIERDGLIIGCAALYPFPEEKM 359 (441)
T ss_pred hcCCCCceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCCccccCHHHHhcccCcEEEEEECCEEEEEEEEEEcCCCCe
Confidence 99999999999999999999999999999999987766666667777788877788899999999999998886554567
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEE
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMK 484 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~k 484 (500)
++|..++|+|+|||+|+|++|+++++++|+++|++.+++.++++.+||+|+||+..+...+|..++..|+++|+|++|++
T Consensus 360 ~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~l~l~~~~a~~fY~k~GF~~~g~~~~~~~~~~~y~~~r~~~~~~~ 439 (441)
T PRK05279 360 GEMACLAVHPDYRGSGRGERLLKRIEQRARQLGLKRLFVLTTRTAHWFLERGFVPVDVDDLPEAKRQLYNYQRRSKVLVK 439 (441)
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHCcCEECChhhCcHHHHHhhCcccCceeeee
Confidence 89999999999999999999999999999999999998887789999999999999999999999999999999999999
Q ss_pred ec
Q 010815 485 KL 486 (500)
Q Consensus 485 kl 486 (500)
++
T Consensus 440 ~~ 441 (441)
T PRK05279 440 DL 441 (441)
T ss_pred cC
Confidence 75
No 4
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-51 Score=396.82 Aligned_cols=242 Identities=38% Similarity=0.602 Sum_probs=227.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.++++||++|+..|.++|||||||||++.+++++|++++|++|+|+||+++|+++ |+++|.+|+.|++.
T Consensus 20 ~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva~--------- 90 (265)
T COG0548 20 LEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVAR--------- 90 (265)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 78999999999999999999999999999999999999999999999999999999 77888999999994
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|.+ ++++++.||+++++++.++..++|+||+|+|++||++.|+.+|++|+|||++|++++.+|+.+|+|+|+
T Consensus 91 l~~~g~~----avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~ 166 (265)
T COG0548 91 LSKHGGQ----AVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADT 166 (265)
T ss_pred HHHhCCc----ceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHH
Confidence 6788876 999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccCC-CCc--cccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccc
Q 010815 166 VATACALAIEADKLICIIDGPILDE-SGH--LIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVY 242 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~~-~g~--~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (500)
+|+++|.+|+|+||+||||++|+.. .++ +|+.++.+++++++.++. ++
T Consensus 167 ~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~-----------------------------i~ 217 (265)
T COG0548 167 AAGALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGI-----------------------------IT 217 (265)
T ss_pred HHHHHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCC-----------------------------cc
Confidence 9999999999999999999999854 344 999999999999987653 22
Q ss_pred ccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeee
Q 010815 243 SSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLL 322 (500)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~ 322 (500)
| | |.+||++|+.||++||+++||+|++.|+.++.
T Consensus 218 ~-------------------------G---------------------Mi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~ 251 (265)
T COG0548 218 G-------------------------G---------------------MIPKVEAALEALESGVRRVHIISGRVPHSLLL 251 (265)
T ss_pred C-------------------------c---------------------cHHHHHHHHHHHHhCCCeEEEecCCCcchHHH
Confidence 2 4 99999999999999999999999999999999
Q ss_pred hhhhcCCCcceeec
Q 010815 323 ELFKRDGMGTMVAS 336 (500)
Q Consensus 323 ~l~~~~~~GT~i~~ 336 (500)
++|++.+.||+|.+
T Consensus 252 eLFt~~giGT~i~~ 265 (265)
T COG0548 252 ELFTRDGIGTMIVR 265 (265)
T ss_pred HHhcCCCcceEecC
Confidence 99999999999863
No 5
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.3e-43 Score=353.77 Aligned_cols=244 Identities=50% Similarity=0.748 Sum_probs=220.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++||+.|.+.|.++|||||||||++.++.++++++++++|+|+|++++|+++.++++.+|+.|++.|++
T Consensus 35 l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~l~~------- 107 (280)
T cd04237 35 FDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALECVKEAAGAVRLEIEALLSM------- 107 (280)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 4689999999999999999999999999999999999999999999999999999966689999999997643
Q ss_pred hhcCCC-CCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 87 RRHGDS-SRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~-~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|++ .+++..++++.+++++.+++.+++++.|+|++|.++.+|.+.|+.||++|+|||++|++.+++|+.+|+|+|+
T Consensus 108 ---~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~ 184 (280)
T cd04237 108 ---GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMED 184 (280)
T ss_pred ---hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCCCCEEeeCHHH
Confidence 333 1122457888899999999998888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccccc
Q 010815 166 VATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSS 244 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (500)
+|++||.+|+|++|+|+|||||+. .++++|++++.+|+++++..+.
T Consensus 185 ~A~~LA~~L~a~klv~ltdv~GV~~~~~~~i~~i~~~e~~~l~~~~~--------------------------------- 231 (280)
T cd04237 185 VATAVAIALKADKLIFLTDGPGLLDDDGELIRELTAQEAEALLETGA--------------------------------- 231 (280)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCCCCccccCCHHHHHHHHHcCC---------------------------------
Confidence 999999999999999999999986 4799999999999999986532
Q ss_pred CCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehh
Q 010815 245 QNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLEL 324 (500)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l 324 (500)
+.+|| |.+||++|..|+++||+++||+|++.|++++.|+
T Consensus 232 --------------------------------~~~gg---------M~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~el 270 (280)
T cd04237 232 --------------------------------LLTND---------TARLLQAAIEACRGGVPRVHLISYAEDGALLLEL 270 (280)
T ss_pred --------------------------------CCCCC---------HHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHH
Confidence 01223 9999999999999999999999999999999999
Q ss_pred hhcCCCccee
Q 010815 325 FKRDGMGTMV 334 (500)
Q Consensus 325 ~~~~~~GT~i 334 (500)
|++++.||+|
T Consensus 271 ft~~g~GT~i 280 (280)
T cd04237 271 FTRDGVGTLI 280 (280)
T ss_pred hcCCCCCCcC
Confidence 9999999986
No 6
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=100.00 E-value=3.1e-43 Score=351.90 Aligned_cols=238 Identities=26% Similarity=0.454 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
..++++||+.|+..|.++|||||||||+|++++++|+++++++|+|+|++++|+++ +++++.+|..|++ .
T Consensus 41 ~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~---------~ 111 (284)
T CHL00202 41 KADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVG---------S 111 (284)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHH---------H
Confidence 45899999999999999999999999999999999999999999999999999999 7788999999999 4
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|++ ++++++.|++++++++. ++.|++++|+++++|.+.|+.+|++|+|||++|++++..|+.+|+|+|+
T Consensus 112 L~~~Gv~----av~l~~~d~~~i~a~~~---~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~ 184 (284)
T CHL00202 112 INANGGK----AVGLCGKDANLIVARAS---DKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADV 184 (284)
T ss_pred HHhCCCC----eeeeeeccCCEEEEEeC---CCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHH
Confidence 6788988 99999999999999974 4578999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccCC----CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccc
Q 010815 166 VATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSV 241 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~~----~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (500)
+|++||.+|+||+|+|+|||||+.. ++++|++++.+|+++++..+. +
T Consensus 185 ~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~~~i~~i~~~e~~~l~~~g~-----------------------------~ 235 (284)
T CHL00202 185 VAGEIAAKLNAEKLILLTDTPGILADINDPNSLISTLNIKEARNLASTGI-----------------------------I 235 (284)
T ss_pred HHHHHHHHhCCCEEEEEeCChhhcCCCCCCCCccccccHHHHHHHHhcCC-----------------------------C
Confidence 9999999999999999999999853 378999999999888863221 1
Q ss_pred cccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceee
Q 010815 242 YSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLL 321 (500)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll 321 (500)
+| | |.+||++|..|+++|++++||+||+.|++++
T Consensus 236 ------------------------tG-G---------------------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll 269 (284)
T CHL00202 236 ------------------------SG-G---------------------MIPKVNCCIRALAQGVEAAHIIDGKEKHALL 269 (284)
T ss_pred ------------------------CC-C---------------------HHHHHHHHHHHHHcCCCEEEEeCCCCCChHH
Confidence 22 3 9999999999999999999999999999888
Q ss_pred ehhhhcCCCcceee
Q 010815 322 LELFKRDGMGTMVA 335 (500)
Q Consensus 322 ~~l~~~~~~GT~i~ 335 (500)
.++|++++.||+|.
T Consensus 270 ~el~~~~g~GT~i~ 283 (284)
T CHL00202 270 LEILTEKGIGSMLV 283 (284)
T ss_pred HHHhcCCCCceEEe
Confidence 99999999999985
No 7
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=100.00 E-value=9.9e-41 Score=327.90 Aligned_cols=232 Identities=25% Similarity=0.361 Sum_probs=204.6
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
++.++++||+.|++.|.++|||||||+|+|++++++|++++|++|+|+|++++|+.++++++.+|..+++ .
T Consensus 13 ~l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~---------~ 83 (248)
T cd04252 13 DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLVE---------A 83 (248)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHH---------H
Confidence 4789999999999999999999999999999999999999999999999999999997777899999999 4
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|.++|++ ++++++ +++.+++ +++.|+||+|+++++|.+.|+.+|+.|+|||++|++++++|+.+|+|+|+
T Consensus 84 l~~~g~~----a~~l~~---~~~~a~~---~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~ 153 (248)
T cd04252 84 LERNGAR----ARPITS---GVFEAEY---LDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADV 153 (248)
T ss_pred HHhCCCC----cccccC---ceEEEEE---CcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHH
Confidence 6788888 788774 3567776 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-CCCccccccCHH-HHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccc
Q 010815 166 VATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQ-EADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYS 243 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (500)
+|++||.+|+|++|+|+||+||+. .++++|++++.. +.++++..+ | ++|
T Consensus 154 ~A~~lA~aL~a~kli~ltdv~GV~~~~g~~i~~i~~~~~~~~l~~~~----~-------------------------vtg 204 (248)
T cd04252 154 AAGELARVLEPLKIVFLNETGGLLDGTGKKISAINLDEEYDDLMKQP----W-------------------------VKY 204 (248)
T ss_pred HHHHHHHHcCCCeEEEEECCcccCCCCCCcccccCHHHHHHHHHHcC----C-------------------------cCC
Confidence 999999999999999999999985 459999999974 677776432 1 222
Q ss_pred cCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHc--CCCeEEeeccccCceee
Q 010815 244 SQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRR--GVQRVHLLDGTIGGVLL 321 (500)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~ll 321 (500)
| |.+||++|..+.+. ++..+||++ +++++
T Consensus 205 -------------------------G---------------------M~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll 235 (248)
T cd04252 205 -------------------------G---------------------TKLKIKEIKELLDTLPRSSSVSITS---PDDLQ 235 (248)
T ss_pred -------------------------c---------------------hHHHHHHHHHHHHhCCCceEEEEEC---CchHH
Confidence 4 99999988887776 566788877 68899
Q ss_pred ehhhhcCCCccee
Q 010815 322 LELFKRDGMGTMV 334 (500)
Q Consensus 322 ~~l~~~~~~GT~i 334 (500)
.++|++++.||+|
T Consensus 236 ~elf~~~g~GT~i 248 (248)
T cd04252 236 KELFTHSGAGTLI 248 (248)
T ss_pred HHHhcCCCCCccC
Confidence 9999999999986
No 8
>PLN02512 acetylglutamate kinase
Probab=100.00 E-value=2.7e-40 Score=334.08 Aligned_cols=239 Identities=28% Similarity=0.489 Sum_probs=218.4
Q ss_pred HHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhh
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
.++++||+.|+..|.++|||||||+++|++++++++++++++|+|+|++++++++ +.+++.+|..|++ .|
T Consensus 66 ~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~---------~L 136 (309)
T PLN02512 66 AGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVS---------LI 136 (309)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHH---------HH
Confidence 4699999999999999999999999999999999999999999999999999999 7778999999999 57
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
+++|++ ++++++.|++++++++.+ ++++++++|++.+++.+.|+.+|++|+|||++|+++++.|+.+++|+|++
T Consensus 137 ~~~Gv~----av~l~g~d~~~i~a~~~~--~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~ 210 (309)
T PLN02512 137 NKAGGT----AVGLSGKDGRLLRARPSP--NSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTA 210 (309)
T ss_pred HHcCCC----eEEeehhhCCEEEEEEcC--cCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHH
Confidence 899998 999999999999999863 44689999999999999999999999999999999998999999999999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC----CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccc
Q 010815 167 ATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVY 242 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~----~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (500)
|+.||.+|+||+|+|+|||||+. +++++|++++.+|+++++..+. +
T Consensus 211 A~~lA~~L~Ad~li~lTdV~GV~~~~~~~~~lI~~i~~~e~~~l~~~~~-----------------------------v- 260 (309)
T PLN02512 211 AGEIAAALGAEKLILLTDVAGVLEDKDDPGSLVKELDIKGVRKLIADGK-----------------------------I- 260 (309)
T ss_pred HHHHHHHcCCCEEEEEeCCcceeCCCCCCcCCCcccCHHHHHHHHhCCC-----------------------------C-
Confidence 99999999999999999999985 3589999999999888864321 1
Q ss_pred ccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeee
Q 010815 243 SSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLL 322 (500)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~ 322 (500)
+| | |.+||++|..++++|++++||+||+.|++++.
T Consensus 261 -----------------------tG-G---------------------M~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~ 295 (309)
T PLN02512 261 -----------------------AG-G---------------------MIPKVECCVRSLAQGVKTAHIIDGRVPHSLLL 295 (309)
T ss_pred -----------------------CC-c---------------------HHHHHHHHHHHHHcCCCEEEEecCCCCChHHH
Confidence 22 3 99999999999999999999999999998888
Q ss_pred hhhhcCCCcceeec
Q 010815 323 ELFKRDGMGTMVAS 336 (500)
Q Consensus 323 ~l~~~~~~GT~i~~ 336 (500)
++|++++.||+|.+
T Consensus 296 ~l~~~~~~GT~I~~ 309 (309)
T PLN02512 296 EILTDEGAGTMITG 309 (309)
T ss_pred HHhcCCCCeeEEeC
Confidence 99998999999863
No 9
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=5.4e-39 Score=317.53 Aligned_cols=239 Identities=32% Similarity=0.521 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHH-hHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAA-GGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~-~~i~~~i~~~l~~~~~~~~ 85 (500)
+.++++||+.|+..|.++|||||+|+++|++++++++..++.+++|+|++++++.+.+++ +++|..|++ +
T Consensus 16 ~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~---------~ 86 (256)
T cd04238 16 KEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVS---------L 86 (256)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH---------H
Confidence 578999999999999999999999999999999999999999999999999999996666 999999988 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|++ ++++++.+++++++++.+ ++++|++|+|++..++.+.|+.+|++|+|||++|++++..|+.+++|+|+
T Consensus 87 L~~~Gv~----a~~l~~~~~~~~~~~~~~-~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~ 161 (256)
T cd04238 87 LNRAGGK----AVGLSGKDGGLIKAEKKE-EKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADT 161 (256)
T ss_pred HHhCCCC----CCCcccccCCEEEEEECC-CCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHH
Confidence 7789988 999999999999999998 88899999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccCC-CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccccc
Q 010815 166 VATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSS 244 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~~-~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (500)
+|+.||.+|+||+|+|+|||+|++. ++++|++++.+|+++++..+
T Consensus 162 ~A~~lA~~l~a~~li~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~~---------------------------------- 207 (256)
T cd04238 162 AAGAIAAALKAEKLILLTDVPGVLDDPGSLISELTPKEAEELIEDG---------------------------------- 207 (256)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccCCCCCccccCCHHHHHHHHHcC----------------------------------
Confidence 9999999999999999999999865 48999999998888876321
Q ss_pred CCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehh
Q 010815 245 QNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLEL 324 (500)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l 324 (500)
+.+|| |.+|+++|..++++|+.++||+|++.|++|+.++
T Consensus 208 --------------------------------~~~gg---------m~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l 246 (256)
T cd04238 208 --------------------------------VISGG---------MIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL 246 (256)
T ss_pred --------------------------------CCCCC---------hHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence 11223 9999999999999999999999999999999999
Q ss_pred hhcCCCccee
Q 010815 325 FKRDGMGTMV 334 (500)
Q Consensus 325 ~~~~~~GT~i 334 (500)
+++++.||.|
T Consensus 247 ~~~~~~GT~i 256 (256)
T cd04238 247 FTDEGIGTMI 256 (256)
T ss_pred hcCCCCCCCC
Confidence 8878899986
No 10
>PRK00942 acetylglutamate kinase; Provisional
Probab=100.00 E-value=1.1e-38 Score=319.67 Aligned_cols=241 Identities=36% Similarity=0.570 Sum_probs=219.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.|+..|.++|||||+|++++.+++++++.+++.+|+|+|+++++++. +.+++.+|..+++ +
T Consensus 41 ~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~---------~ 111 (283)
T PRK00942 41 KEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELVS---------L 111 (283)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHHH---------H
Confidence 46799999999999999999999999999999999999999999999999999998 5555899999998 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|++ ++++++.|++++++++. .+++|++++|.++.+|.+.|+.+|++|+|||++|++++.+|+.+|+|+|+
T Consensus 112 L~~~Gv~----a~~l~~~~~~~~ta~~~--~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~ 185 (283)
T PRK00942 112 INKHGGK----AVGLSGKDGGLITAKKL--EEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADT 185 (283)
T ss_pred HHhCCCC----ccceeeccCCEEEEEEC--CCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHH
Confidence 7789988 89999999999999986 67789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccCC-CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccccc
Q 010815 166 VATACALAIEADKLICIIDGPILDE-SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSS 244 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~~-~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (500)
+|+.||.+|+|++|+|+|||||+.. ++++|++++.+|++++...+. +
T Consensus 186 ~A~~lA~~l~A~~li~~tdv~Gv~~~~~~~i~~i~~~e~~~~~~~~~-----------------------------~--- 233 (283)
T PRK00942 186 AAGAIAAALGAEKLILLTDVPGVLDDKGQLISELTASEAEELIEDGV-----------------------------I--- 233 (283)
T ss_pred HHHHHHHHcCCCEEEEEECCcccccCCCcccccCCHHHHHHHHHcCC-----------------------------C---
Confidence 9999999999999999999999865 599999999999988864321 1
Q ss_pred CCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehh
Q 010815 245 QNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLEL 324 (500)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l 324 (500)
+| | |.+||++|..++++|+.++||+|++.|+++|.++
T Consensus 234 ---------------------tg-g---------------------m~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~ 270 (283)
T PRK00942 234 ---------------------TG-G---------------------MIPKVEAALDAARGGVRSVHIIDGRVPHALLLEL 270 (283)
T ss_pred ---------------------CC-c---------------------hHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHH
Confidence 22 3 9999999999999999999999999999878999
Q ss_pred hhcCCCcceeecc
Q 010815 325 FKRDGMGTMVASD 337 (500)
Q Consensus 325 ~~~~~~GT~i~~d 337 (500)
|++++.||.|.++
T Consensus 271 ~~~~~~GT~i~~~ 283 (283)
T PRK00942 271 FTDEGIGTMIVPD 283 (283)
T ss_pred hcCCCcceEEecC
Confidence 9999999999864
No 11
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=100.00 E-value=1.1e-38 Score=319.01 Aligned_cols=240 Identities=32% Similarity=0.529 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
..+++++|+.|+..|.++|||||+|++++.+++++++++++.+|+|+|++.+++++ +.+++++|..|++ .
T Consensus 32 ~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l~~---------~ 102 (279)
T cd04250 32 KESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVS---------L 102 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH---------H
Confidence 45899999999999999999999999999999999999999999999999999998 4444899999988 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCc---cCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecC
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGV---VDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCN 162 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~---~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~ 162 (500)
|+++|++ ++++++.|++++++++.+. ++++|++++|+++.++++.|+.+|++|+|||++|++.++.|+.+++|
T Consensus 103 L~~~Gv~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~ 178 (279)
T cd04250 103 INRAGGK----AVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNIN 178 (279)
T ss_pred HHHcCCC----cceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeC
Confidence 7889998 9999999999999999886 68899999999999999999999999999999999888889999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcccCC----CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 163 TYEVATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 163 ~D~~a~~lA~~l~Ad~li~lTdv~gv~~----~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|.+|+.||.+|+||+|+|+|||||+.. ++++|++++.+|++++...+.
T Consensus 179 ~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~~~--------------------------- 231 (279)
T cd04250 179 ADTAAGAIAAALKAEKLILLTDVAGVLDDPNDPGSLISEISLKEAEELIADGI--------------------------- 231 (279)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCcccccCCCCCccccccCCHHHHHHHHHcCC---------------------------
Confidence 9999999999999999999999999853 389999999999888764311
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
+ +| | |.+|+++|..++++|++++||+|++.|+
T Consensus 232 --~------------------------tG-g---------------------m~~Kl~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 232 --I------------------------SG-G---------------------MIPKVEACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred --C------------------------CC-c---------------------hHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 1 22 3 9999999999999999999999999999
Q ss_pred eeeehhhhcCCCccee
Q 010815 319 VLLLELFKRDGMGTMV 334 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i 334 (500)
+++.++|++++.||+|
T Consensus 264 ~ll~~~~~~~~~GT~i 279 (279)
T cd04250 264 SLLLEIFTDEGIGTMI 279 (279)
T ss_pred hHHHHHhcCCCCccCC
Confidence 9999999999999986
No 12
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=1.8e-38 Score=313.53 Aligned_cols=232 Identities=32% Similarity=0.431 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeC---C--ccCCCHHHHHHHHHHHhHHHHHHHHhhCCCC
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAGGIRMMIEAKLSPGP 81 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~---g--~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~ 81 (500)
+.++++||+.| |.++|||||||||+|..++++++++++++ | .|+|++++|++++++++.+|..|++
T Consensus 13 ~~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~------ 83 (257)
T cd04251 13 LDKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIVA------ 83 (257)
T ss_pred hHHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHHH------
Confidence 46899999988 89999999999999999999999999985 7 4999999999997777999999999
Q ss_pred CchhhhhcCCCCCccccceeeccccEEEEEEc--------CccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccC
Q 010815 82 PICNIRRHGDSSRWHEVGVSVASGNFLAAKRK--------GVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYS 153 (500)
Q Consensus 82 ~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~--------~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~ 153 (500)
.|+++|++ ++++++.+.+++++++. +.....|++|+|+++++|.+.|+.+|++|+|||++|++++
T Consensus 84 ---~L~~~Gi~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~ 156 (257)
T cd04251 84 ---RLHSLGVK----AVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYS 156 (257)
T ss_pred ---HHHhCCCC----ceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEEC
Confidence 46788988 99999999999998875 3334568999999999999999999999999999999999
Q ss_pred CCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccCCCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccC
Q 010815 154 SSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFG 233 (500)
Q Consensus 154 ~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (500)
.+|+.+|+|+|.+|++||.+|+||+|+|+|||||+..++++|++++.+|+++++.. +
T Consensus 157 ~~G~~~~i~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~------~----------------- 213 (257)
T cd04251 157 EEGEPLNVDGDRAAAAIAAALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEK------A----------------- 213 (257)
T ss_pred CCCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhh------C-----------------
Confidence 89999999999999999999999999999999999878999999999998888621 1
Q ss_pred CCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeec
Q 010815 234 HSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLD 313 (500)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 313 (500)
+| | |.+||++|..++++|++++||+|
T Consensus 214 --------------------------------~g-g---------------------m~~Kl~aa~~a~~~gv~~v~i~~ 239 (257)
T cd04251 214 --------------------------------GG-G---------------------MKRKLLAAAEAVEGGVREVVIGD 239 (257)
T ss_pred --------------------------------CC-c---------------------hHHHHHHHHHHHHcCCCEEEEec
Confidence 22 4 99999999999999999999999
Q ss_pred cccCceeeehhhhcCCCccee
Q 010815 314 GTIGGVLLLELFKRDGMGTMV 334 (500)
Q Consensus 314 ~~~~~~ll~~l~~~~~~GT~i 334 (500)
|+.|+++. .++. +.||.|
T Consensus 240 g~~~~~l~-~~l~--g~gT~i 257 (257)
T cd04251 240 ARADSPIS-SALN--GGGTVI 257 (257)
T ss_pred CCCccHHH-HHHc--CCCcCC
Confidence 99998754 4443 358875
No 13
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=100.00 E-value=3.8e-38 Score=313.15 Aligned_cols=236 Identities=30% Similarity=0.405 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeC---C--ccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCC
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLG---R--YRITDSESLAAAMEAAGGIRMMIEAKLSPGPP 82 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~---g--~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~ 82 (500)
.+++.||+.++..|.++|||||||+|+|++++++++++++++ | +|+|++++|+.++++++++|..|++
T Consensus 15 ~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~~ln~~lv~------- 87 (268)
T PRK14058 15 EDALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMALINKQLVE------- 87 (268)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHHHHHHHHHH-------
Confidence 578999999999999999999999999999999999999998 6 8999999999997777799999998
Q ss_pred chhhhhcCCCCCccccceeeccccEEEEEEcC----ccCC----cccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCC
Q 010815 83 ICNIRRHGDSSRWHEVGVSVASGNFLAAKRKG----VVDG----VDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSS 154 (500)
Q Consensus 83 ~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~----~~~~----~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~ 154 (500)
+|+++|++ ++++++.+.+++++++.. ..++ .|++|+|+++.++.+.|+.+|++|+|||++|++++.
T Consensus 88 --~L~~~Gv~----a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~ 161 (268)
T PRK14058 88 --RLQSLGVN----AVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSE 161 (268)
T ss_pred --HHHhCCCC----ccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECC
Confidence 46788988 999999999998887643 2333 689999999999999999999999999999998887
Q ss_pred CCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC----CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhccccc
Q 010815 155 SGEVLNCNTYEVATACALAIEADKLICIIDGPILD----ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDIT 230 (500)
Q Consensus 155 ~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~----~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (500)
.|+.+|+|+|.+|+.||.+|+||+|+|+|||||++ +++++|++++.+|++++...
T Consensus 162 ~g~~~~i~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~~~~~i~~i~~~e~~~l~~~--------------------- 220 (268)
T PRK14058 162 EGEPLNVDGDRAAAAIAGALKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKA--------------------- 220 (268)
T ss_pred CCcEEecCHHHHHHHHHHHcCCCEEEEEeCChhhccCCCCCCcCccCcCHHHHHHHhhc---------------------
Confidence 88999999999999999999999999999999985 24889999998888776421
Q ss_pred ccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEE
Q 010815 231 CFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVH 310 (500)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 310 (500)
+ +| | |.+||++|..|+++|++++|
T Consensus 221 ----------~------------------------tG-g---------------------M~~Kl~aa~~a~~~Gv~~v~ 244 (268)
T PRK14058 221 ----------A------------------------GG-G---------------------MKKKVLMAAEAVEGGVGRVI 244 (268)
T ss_pred ----------c------------------------CC-c---------------------cHHHHHHHHHHHHcCCCEEE
Confidence 1 22 3 99999999999999999999
Q ss_pred eeccccCceeeehhhhcCCCcceeec
Q 010815 311 LLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 311 ~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|+|++.|++++.++ ++.||+|.+
T Consensus 245 I~~g~~~~~l~~~l---~G~GT~I~~ 267 (268)
T PRK14058 245 IADANVDDPISAAL---AGEGTVIVN 267 (268)
T ss_pred EEcCCCcchHHHHh---CCCceEEec
Confidence 99999999877666 345999965
No 14
>PRK04531 acetylglutamate kinase; Provisional
Probab=100.00 E-value=1e-37 Score=323.38 Aligned_cols=287 Identities=21% Similarity=0.257 Sum_probs=234.7
Q ss_pred ccHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCch
Q 010815 5 IPWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPIC 84 (500)
Q Consensus 5 ~~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~ 84 (500)
.++.++++||+.|+..|.++|||||||||++.++++.|+++++++|+|+|++++|+++.++.+.+|..|++
T Consensus 50 ~~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~--------- 120 (398)
T PRK04531 50 DDLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALAIVRKVFQRSNLDLVE--------- 120 (398)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHHHHHHHHHHHHHHHHH---------
Confidence 46789999999999999999999999999999999999999999999999999999996666688887765
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHH
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 164 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D 164 (500)
+ |+.+|++|+|||++|++.+++|+.+|+|+|
T Consensus 121 ------------~-------------------------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD 151 (398)
T PRK04531 121 ------------A-------------------------------------VESSLRAGSIPVIASLGETPSGQILNINAD 151 (398)
T ss_pred ------------H-------------------------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHH
Confidence 1 889999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcccC-CCCccccccCH-HHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccc
Q 010815 165 EVATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVY 242 (500)
Q Consensus 165 ~~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (500)
++|++||.+|+|+||||+||++|+. .+|++|++++. ++.+.++..+. ++
T Consensus 152 ~vA~~LA~aL~a~KLIfltdv~GV~d~~g~~i~~i~~~~e~~~l~~~~~-----------------------------vt 202 (398)
T PRK04531 152 VAANELVSALQPYKIIFLTGTGGLLDADGKLISSINLSTEYDHLMQQPW-----------------------------IN 202 (398)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCccCCCCCCcccCCHHHHHHHHHhcCC-----------------------------CC
Confidence 9999999999999999999999985 58999999997 46777754321 12
Q ss_pred ccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeee
Q 010815 243 SSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLL 322 (500)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~ 322 (500)
| | |.+||++|..+++ +++++|++++..|++++.
T Consensus 203 ------------------------g-G---------------------M~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~ 235 (398)
T PRK04531 203 ------------------------G-G---------------------MKLKLEQIKELLD-RLPLESSVSITSPSDLAK 235 (398)
T ss_pred ------------------------c-c---------------------HHHHHHHHHHHHh-CCCcEEEEEecCCCHHHH
Confidence 2 3 9999999999995 577899999999999999
Q ss_pred hhhhcCCCcceeeccccc-ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecC
Q 010815 323 ELFKRDGMGTMVASDLYE-GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFK 401 (500)
Q Consensus 323 ~l~~~~~~GT~i~~d~~~-~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~ 401 (500)
++|++++.||+|.+...+ ..+.+.+-|++.+.+++...+.. ......++ . ...+-+..++..=|++.+.. .
T Consensus 236 eLft~~G~GT~I~~g~~i~~~~~~~~~d~~~l~~ll~~sf~r----~~~~~y~~-~-~~~~~~y~~~~y~~~Aiv~~--~ 307 (398)
T PRK04531 236 ELFTHKGSGTLVRRGERILRATDWDELDLERLNLLIESSFGR----TLKPDYFD-T-TQLLRAYVSENYRAAAILTE--T 307 (398)
T ss_pred HHccCCCCCeEEecCCceeeeCChhhcCHHHHHHHHhhhccc----chHHHHhc-c-CCceEEEEeCCCcEEEEEec--C
Confidence 999999999999986653 34455566899999997443332 22222333 2 23333333444445555542 2
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 010815 402 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 433 (500)
Q Consensus 402 ~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a 433 (500)
....++..|+|.+.-||.|++..++..+.+..
T Consensus 308 ~~~~~Ldkf~v~~~~~~~~v~d~vf~~~~~~~ 339 (398)
T PRK04531 308 GGGPYLDKFAVLDDARGEGLGRAVWNVMREET 339 (398)
T ss_pred CCceEeEEEEEccchhhcChHHHHHHHHHhhC
Confidence 46789999999999999999999999888654
No 15
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=3.6e-37 Score=303.76 Aligned_cols=234 Identities=24% Similarity=0.315 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHH-cCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHH-HHHhHHHHHHHHhhCCCCCch
Q 010815 7 WLVMVQDIAFLHH-LGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAM-EAAGGIRMMIEAKLSPGPPIC 84 (500)
Q Consensus 7 ~~~i~~dIa~L~~-~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~-~~~~~i~~~i~~~l~~~~~~~ 84 (500)
+.+++++|+.+.. .|.++|||||+|+|++++++++++++++++|+|+|++++++++. .+++.+|..+++.
T Consensus 16 ~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~-------- 87 (252)
T cd04249 16 LEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQ-------- 87 (252)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHH--------
Confidence 5689999998854 57899999999999999999999999999999999999999995 4568999999995
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHH
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 164 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D 164 (500)
+.++|++ ++++++.|++++++++.+ .|++++|+|+++|.+.|+.+|+.|+|||++|++++++|+++|+|+|
T Consensus 88 -l~~~Gv~----a~~l~~~~~~~~~~~~~~----~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D 158 (252)
T cd04249 88 -AIKAGLK----PVGLSLADGGMTAVTQLD----PELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNAD 158 (252)
T ss_pred -HHhCCCC----ceeeeccCCCEEEEEEcC----CCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHH
Confidence 5688988 999999999999999875 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcccC-CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccc
Q 010815 165 EVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYS 243 (500)
Q Consensus 165 ~~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (500)
++|+++|.+|+|+ ++|+|||||++ .++++|++++.+|+++++..+. +
T Consensus 159 ~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~~~i~~i~~~e~~~~~~~g~-----------------------------~-- 206 (252)
T cd04249 159 QAATAIAQLLNAD-LVLLSDVSGVLDADKQLISELNAKQAAELIEQGV-----------------------------I-- 206 (252)
T ss_pred HHHHHHHHHcCCC-EEEEeCCcccCCCCCcCccccCHHHHHHHHhcCC-----------------------------C--
Confidence 9999999999999 78999999986 4789999999999888864321 1
Q ss_pred cCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeeh
Q 010815 244 SQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLE 323 (500)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~ 323 (500)
+| | |.+|+.+|..++++|+.++||++|+.|+. +.+
T Consensus 207 ----------------------~g-G---------------------m~~kl~~a~~~~~~~~~~v~I~~g~~~~~-l~~ 241 (252)
T cd04249 207 ----------------------TD-G---------------------MIVKVNAALDAAQSLRRGIDIASWQYPEQ-LTA 241 (252)
T ss_pred ----------------------cC-C---------------------cHHHHHHHHHHHHhCCCeEEEEeCCCccH-HHH
Confidence 22 3 99999999999999988999999999985 678
Q ss_pred hhhcCCCccee
Q 010815 324 LFKRDGMGTMV 334 (500)
Q Consensus 324 l~~~~~~GT~i 334 (500)
+|++++.||+|
T Consensus 242 ~l~g~~~GT~I 252 (252)
T cd04249 242 LLAGEPVGTKI 252 (252)
T ss_pred HHcCCCCCcCC
Confidence 99988999986
No 16
>PRK12352 putative carbamate kinase; Reviewed
Probab=100.00 E-value=5.3e-37 Score=308.12 Aligned_cols=243 Identities=16% Similarity=0.201 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++||++|+++|+++|||||||||++.++.++++.+++ +|+|+||.. ..+.++++.+.+.+.+.|++ .|
T Consensus 30 ~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~-~g~rvt~~~--~~v~~~~g~i~~~i~~~L~~-----~l 101 (316)
T PRK12352 30 VKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHER-EGLPLTPLA--NCVADTQGGIGYLIQQALNN-----RL 101 (316)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccccc-CCCCCCCHH--HHHHHHHHHHHHHHHHHHHH-----HH
Confidence 47899999999999999999999999999999999999999 699999986 45578888777888777765 67
Q ss_pred hhcCCCC---CccccceeeccccEEE-EEEcCcc-----------CCcccceeee--------------EeeeCHHHHHH
Q 010815 87 RRHGDSS---RWHEVGVSVASGNFLA-AKRKGVV-----------DGVDYGATGE--------------VKKVDVTRMRE 137 (500)
Q Consensus 87 ~~~Gi~~---~~~a~~l~~~d~~~~~-~~~~~~~-----------~~~d~g~~G~--------------v~~vd~~~I~~ 137 (500)
.++|... -+.++++++.|++|++ ++|.|++ +++||+|++. |++||.+.|+.
T Consensus 102 ~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ 181 (316)
T PRK12352 102 ARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKA 181 (316)
T ss_pred HhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHHHHHH
Confidence 7777321 0114778899999994 7788877 5568888555 99999999999
Q ss_pred HHhCCCcEEEc-----CcccCCCCC----eeecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHH
Q 010815 138 RLDGGCLVILS-----NLGYSSSGE----VLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEA 203 (500)
Q Consensus 138 lL~~g~IPVi~-----~~~~~~~g~----~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~ 203 (500)
||++|+|||++ |++.+..|+ .+|||+|.+|+.+|.+|+||+|||||||+|+. +++++|++++.+|+
T Consensus 182 ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~~~~~li~~lt~~e~ 261 (316)
T PRK12352 182 LIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIATM 261 (316)
T ss_pred HHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCcccccccCHHHH
Confidence 99999997777 887776554 55699999999999999999999999999884 35789999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccc
Q 010815 204 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 283 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 283 (500)
++++.++. |..||
T Consensus 262 ~~li~~g~-----------------------------------------------------------------i~~Gg-- 274 (316)
T PRK12352 262 TRYMQEGH-----------------------------------------------------------------FPPGS-- 274 (316)
T ss_pred HHHHhcCC-----------------------------------------------------------------cCCCC--
Confidence 99985432 22233
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceeec
Q 010815 284 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|.+||++|..|+++|+.++||++ ++. +.++++++ .||+|..
T Consensus 275 -------M~pKl~aA~~al~~Gv~~v~I~~---~~~-i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 275 -------MLPKIIASLTFLEQGGKEVIITT---PEC-LPAALRGE-TGTHIIK 315 (316)
T ss_pred -------CHHHHHHHHHHHHhCCCeEEEcc---hHH-HHHHHcCC-CCeEEEe
Confidence 99999999999999999999997 554 45777766 7999864
No 17
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=100.00 E-value=4.1e-37 Score=302.98 Aligned_cols=214 Identities=19% Similarity=0.211 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++||++|++.|.++||||||||+++..++ +.++ ..+.+....+|..|++ .|
T Consensus 53 ~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~----~~~~------------~~~~~v~~~~n~~Lv~---------~L 107 (271)
T cd04236 53 VQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS----DLEL------------QAARSRLVKDCKTLVE---------AL 107 (271)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc----CCcc------------hheehhHHHHHHHHHH---------HH
Confidence 689999999999999999999999999998886 2222 1143333389999999 46
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
+.+|++ ++++++. ++++++++ ..|+|++|+|++||.+.|+.+|++|+|||++|++++++|+.+|+|+|++
T Consensus 108 ~~~G~~----A~gl~g~-~~~i~a~~-----~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~ 177 (271)
T cd04236 108 QANSAA----AHPLFSG-ESVLQAEE-----PEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEV 177 (271)
T ss_pred HhCCCC----eeeecCc-cceEEEEE-----cccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHH
Confidence 788988 8999987 68999987 3688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC-CCCccccccCH-HHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCcccccc
Q 010815 167 ATACALAIEADKLICIIDGPILD-ESGHLIRFLTL-QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSS 244 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (500)
|++||.+|+|+||||+||++|+. .++++|++++. +|++++++++. ++|
T Consensus 178 A~~lA~aL~A~KLIfltd~~GV~~~~g~lI~~l~~~~e~~~li~~g~-----------------------------i~g- 227 (271)
T cd04236 178 TTAIAKALQPIKVIFLNRSGGLRDQKHKVLPQVHLPADLPSLSDAEW-----------------------------LSE- 227 (271)
T ss_pred HHHHHHHcCCCEEEEEeCCcceECCCCCCccccCcHHHHHHHHhCCE-----------------------------EcC-
Confidence 99999999999999999999984 57999999995 89999998765 444
Q ss_pred CCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccc---hHHHHHHHHHHHcCCCeEEeeccccCceee
Q 010815 245 QNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGY---LSELAAAAFVCRRGVQRVHLLDGTIGGVLL 321 (500)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll 321 (500)
| | .+|+++|+.++.+|++ |||++ |++++
T Consensus 228 ------------------------G---------------------m~~ki~ki~~~l~~l~~g~s-v~I~~---~~~ll 258 (271)
T cd04236 228 ------------------------T---------------------EQNRIQDIATLLNALPSMSS-AVITS---AETLL 258 (271)
T ss_pred ------------------------C---------------------eeechHHHHHHHHhcccCCe-EEEeC---hHHHH
Confidence 4 6 8899999999999999 99998 78899
Q ss_pred ehhhhcCCCccee
Q 010815 322 LELFKRDGMGTMV 334 (500)
Q Consensus 322 ~~l~~~~~~GT~i 334 (500)
.|+|++.+.||+|
T Consensus 259 ~elft~~g~GT~~ 271 (271)
T cd04236 259 TELFSHKGSGTLF 271 (271)
T ss_pred HHHhccCCCCCcC
Confidence 9999999999987
No 18
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=100.00 E-value=4.3e-35 Score=285.45 Aligned_cols=187 Identities=31% Similarity=0.480 Sum_probs=171.6
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCch
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPIC 84 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~ 84 (500)
++.+++++|+.|+..|.++|||||+|+++|.++++++++.++++|.|+|++++++.+ +.+++++|..+++
T Consensus 14 ~~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~--------- 84 (231)
T TIGR00761 14 LLEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVA--------- 84 (231)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHH---------
Confidence 478999999999999999999999999999999999999999999999999999998 4557799999998
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHH
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 164 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D 164 (500)
+|+++|++ ++++++.+++++++++. ++.|++++|+++.++.+.|+.+|++|+|||++|++++.+|+++|+|+|
T Consensus 85 ~L~~~G~~----a~~l~~~~~~~it~~~~---~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD 157 (231)
T TIGR00761 85 LLNKHGIN----AIGLTGGDGQLFTARSL---DKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNAD 157 (231)
T ss_pred HHHhCCCC----cccccCCCCCEEEEEEC---CCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHH
Confidence 57788988 99999999999999875 456899999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcccCC-C-CccccccCHHHHHHHHH
Q 010815 165 EVATACALAIEADKLICIIDGPILDE-S-GHLIRFLTLQEADSLIR 208 (500)
Q Consensus 165 ~~a~~lA~~l~Ad~li~lTdv~gv~~-~-g~~I~~i~~~e~~~~~~ 208 (500)
.+|++||.+|+||+|+|+|||||+.. + +++|++++.+|+++++.
T Consensus 158 ~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~~~i~~i~~~e~~~l~~ 203 (231)
T TIGR00761 158 TAAGALAAALGAEKLVLLTDVPGILNGDGQSLISEIPLEEIEQLIE 203 (231)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCeecCCCCeeccccCHHHHHHHHH
Confidence 99999999999999999999999853 3 45999999999888864
No 19
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=9e-37 Score=311.66 Aligned_cols=401 Identities=42% Similarity=0.577 Sum_probs=332.3
Q ss_pred cccHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCC
Q 010815 4 FIPWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPP 82 (500)
Q Consensus 4 ~~~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~ 82 (500)
-.|+..+++|++.|+..|.++|||||.++|++.++...++++++..+.|+|++.++.++ +..+++.|..++.
T Consensus 108 t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~------- 180 (520)
T KOG2436|consen 108 TSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVI------- 180 (520)
T ss_pred cchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHH-------
Confidence 45788999999999999999999999999999999999999999999999999999999 4599999988888
Q ss_pred chhhhhcCCCCCccccceeec--cccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeee
Q 010815 83 ICNIRRHGDSSRWHEVGVSVA--SGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLN 160 (500)
Q Consensus 83 ~~~l~~~Gi~~~~~a~~l~~~--d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~ 160 (500)
+|+++|-. +.+.++. .++++.+++++++++.+|+++|+|.+||.+.|+.++++|.+|+++.++.+.+|+.+|
T Consensus 181 --nL~~~g~~----ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvln 254 (520)
T KOG2436|consen 181 --NLSQLGTR----ARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLN 254 (520)
T ss_pred --HHHHhhce----eccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEE
Confidence 56778866 4444443 367999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHcCCCEEEEEec-CcccCCCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCC-C
Q 010815 161 CNTYEVATACALAIEADKLICIID-GPILDESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDS-I 238 (500)
Q Consensus 161 i~~D~~a~~lA~~l~Ad~li~lTd-v~gv~~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 238 (500)
||+|++|.++|.+|+|+++++++| .++++.+|+.++.++..+...++.....|.++++..++|+.+--.+-.+...+ .
T Consensus 255 vNa~~~a~elA~~L~~~kli~l~d~g~~l~e~ge~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~ 334 (520)
T KOG2436|consen 255 VNADEVAGELALALGPDKLILLMDKGRILKENGEDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYN 334 (520)
T ss_pred eeHHHHhhHHHhccCcceeEEecccccccccCcccccccccchhHhhhhhhhhhcccccccchhhhhheeeccCcCCCCC
Confidence 999999999999999999999999 55778999999999999988888888889999999999998654442333222 1
Q ss_pred c---cccccCCCCccchh-hhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecc
Q 010815 239 G---SVYSSQNGKTFSER-RIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDG 314 (500)
Q Consensus 239 ~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 314 (500)
+ ++.-++ .+-|.+. ....+.+|.+++.++++|+-.|.++.++.+++.|.+|++..+.+|..-|..+++++|..|+
T Consensus 335 i~~~t~~n~~-~~~~te~G~~t~~~~gv~~~k~~sl~~~~~~~al~~~~~~~rln~~lse~i~a~~~~~~~i~~~~~~D~ 413 (520)
T KOG2436|consen 335 IAITTQQNLI-KELFTEKGAGTLISGGVGINKGNSLISQSFKRALDLEEYIDRLNGSLSELIAAGDYCGGAIKTYELSDG 413 (520)
T ss_pred cceeeccccc-ceeeccCCCCccccCceeeecCcccccchhhhhcchHHHHHHhhchHHHHHHHHHHhccceEEEEccCC
Confidence 2 222222 3334443 7788899999999999999999999999999999999999999999999999999999999
Q ss_pred ccCceeeehhhhcCCCcceeecccccccccCCcccHHHHHHHHHHHHHcCcC-ccCCHHHHHhhcCcEEEEEECCeEEEE
Q 010815 315 TIGGVLLLELFKRDGMGTMVASDLYEGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKALDSFYVVEREGQIIAC 393 (500)
Q Consensus 315 ~~~~~ll~~l~~~~~~GT~i~~d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~-~~~s~~~~~~~l~~~~v~~~dg~IVG~ 393 (500)
....-++.+.|...+.||.. .+-+..++.+-.+|++.|....++......+ ..++.+.+. ..+.++.++.+++++.|
T Consensus 414 ~~e~V~~ldkf~~~~~~~~~-~~V~d~ifn~~~~dfp~i~wr~r~~~~~~~w~f~rs~g~L~-~~~~~lfwyg~~~i~~~ 491 (520)
T KOG2436|consen 414 TNEGVLYLDKFAVSGMGTGS-SDVSDGIFNVMVEDFPEILWRSRPLNEVNKWYFRRSEGSLR-ALDFKLFWYGEGQIIKC 491 (520)
T ss_pred CcccceeeeecccCCccccc-chhhHHHHHHHHHhhhhheeecccccccceEEEeccHHHHh-ccCcEEEEecCcHHHHH
Confidence 87776778888777777776 5666667777788888766665555444433 333444444 44666777888999999
Q ss_pred EEEeeecCCCeEEEEEEEEccCCcCCcHHHHH
Q 010815 394 AALFPFFKEKCGEVAAIGVSPECRGQGQGDKL 425 (500)
Q Consensus 394 ~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~L 425 (500)
..+.++. ++..+.|.++-|+++-+..+
T Consensus 492 a~~~~~~-----~v~~~~~~~d~~~s~~n~k~ 518 (520)
T KOG2436|consen 492 AALFQFF-----EVAAMSVASDIRPSWQNDKL 518 (520)
T ss_pred HHhhhhh-----HHHHhhhccccCccccCCCC
Confidence 8887543 56677888888887765543
No 20
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=4.7e-31 Score=260.37 Aligned_cols=223 Identities=17% Similarity=0.208 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++.|+.++ |.++|||||||++++..++++|+++ |.|+|++.++..+.+++.++|..+++ +|
T Consensus 25 l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~----g~~~~~~~~l~~~~~~~~~ln~~~~~---------~l 89 (252)
T cd04241 25 LERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPD----GDGSFSAEGVAETHEAMLELNSIVVD---------AL 89 (252)
T ss_pred HHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCc----CCCchhhhhHHHHHHHHHHHHHHHHH---------HH
Confidence 445666666665 9999999999999999999999986 67899999999997788899999888 56
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCeeecCHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i~~D~ 165 (500)
.++|++ +.++++.+. ..+. +|.+..++.+.|+.+|+.|+|||++++ +.+.+++.+|+|+|+
T Consensus 90 ~~~g~~----a~~l~~~~~--~~~~------------~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~ 151 (252)
T cd04241 90 LEAGVP----AVSVPPSSF--FVTE------------NGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDD 151 (252)
T ss_pred HHCCCC----eEEEChHHe--EEec------------CCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHH
Confidence 788988 788887763 2221 578889999999999999999999875 467778899999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccCC----CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccc
Q 010815 166 VATACALAIEADKLICIIDGPILDE----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSV 241 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~~----~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (500)
+|+.+|.+|+||+|+|+|||||++. ++++|++++.++++++......
T Consensus 152 ~A~~lA~~l~A~~li~ltdv~Gv~~~~P~~~~~i~~i~~~~~~~~~~~~~~----------------------------- 202 (252)
T cd04241 152 IVVELAKALKPERVIFLTDVDGVYDKPPPDAKLIPEIDVGSLEDILAALGS----------------------------- 202 (252)
T ss_pred HHHHHHHHcCCCEEEEEeCCCeeECCCCCCCeEcceeCccchHHHHHhcCc-----------------------------
Confidence 9999999999999999999999853 5999999999888887642100
Q ss_pred cccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceee
Q 010815 242 YSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLL 321 (500)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll 321 (500)
++ .+.+|| |.+||++|..++++|++ +||+|++.|+. +
T Consensus 203 -------------------~~-------------~~~tGG---------m~~Kl~aa~~a~~~Gv~-v~I~~g~~~~~-l 239 (252)
T cd04241 203 -------------------AG-------------TDVTGG---------MAGKIEELLELARRGIE-VYIFNGDKPEN-L 239 (252)
T ss_pred -------------------CC-------------ccccCC---------HHHHHHHHHHHHhcCCe-EEEEeCCCHHH-H
Confidence 00 012333 99999999999999998 99999999876 5
Q ss_pred ehhhhcCCCccee
Q 010815 322 LELFKRDGMGTMV 334 (500)
Q Consensus 322 ~~l~~~~~~GT~i 334 (500)
.+++.++..||.|
T Consensus 240 ~~~l~g~~~GT~i 252 (252)
T cd04241 240 YRALLGNFIGTRI 252 (252)
T ss_pred HHHHcCCCCceEC
Confidence 6777777889975
No 21
>PRK12686 carbamate kinase; Reviewed
Probab=99.97 E-value=4.7e-30 Score=256.27 Aligned_cols=237 Identities=19% Similarity=0.193 Sum_probs=182.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEECChHHHHHHHH-HcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLS-ERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~-~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
...+++|+.|...|+++|||||||||++.++. ..+.... .+++.+|+++ .+++|.++++|+++|.+ +
T Consensus 29 ~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~------~~~~~pl~~~~a~sqg~iGy~~~q~l~~-----~ 97 (312)
T PRK12686 29 REAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSN------KVPAMPLDTCVAMSQGMIGYWLQNALNN-----E 97 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhcccc------CCCCCChhhhhhhccchhhHHHHHHHHH-----H
Confidence 57899999999999999999999999996655 4444433 2578999999 99999999999999876 8
Q ss_pred hhhcCCCCCccccceee----ccccEEE-EEEcCcc----------------CCcc--cceeeeEee------eCHHHHH
Q 010815 86 IRRHGDSSRWHEVGVSV----ASGNFLA-AKRKGVV----------------DGVD--YGATGEVKK------VDVTRMR 136 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~----~d~~~~~-~~~~~~~----------------~~~d--~g~~G~v~~------vd~~~I~ 136 (500)
|.++++..++.++-.+. .|..|.. .++.|+. ...| .||++.|.+ |+.+.|+
T Consensus 98 l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrvV~sP~P~~ive~~~I~ 177 (312)
T PRK12686 98 LTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRVVPSPKPQEIIEHDTIR 177 (312)
T ss_pred HHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEeeCCCCCccccCHHHHH
Confidence 88888876665544333 3555555 3344432 1223 489999988 9999999
Q ss_pred HHHhCCCcEEEc-----CcccCCCCCe----eecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHH
Q 010815 137 ERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQE 202 (500)
Q Consensus 137 ~lL~~g~IPVi~-----~~~~~~~g~~----~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e 202 (500)
.||++|+|||++ |+..+ ++.. .++|+|.+|++||.+|+||+|+|||||+|++ +++++|++++.+|
T Consensus 178 ~Ll~~G~IpI~~GgggIPVv~~-~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~~~~p~ak~I~~I~~~e 256 (312)
T PRK12686 178 TLVDGGNIVIACGGGGIPVIRD-DNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFINFNKPNQQKLDDITVAE 256 (312)
T ss_pred HHHHCCCEEEEeCCCCCCeEec-CCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccCCCCCCCeECCccCHHH
Confidence 999999999976 55443 3333 3679999999999999999999999999984 4579999999999
Q ss_pred HHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCcccccccccccc
Q 010815 203 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 282 (500)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 282 (500)
+++++.++. |.+||
T Consensus 257 ~~~li~~g~-----------------------------------------------------------------~~tGG- 270 (312)
T PRK12686 257 AKQYIAEGQ-----------------------------------------------------------------FAPGS- 270 (312)
T ss_pred HHHHhhCCC-----------------------------------------------------------------ccCCC-
Confidence 998875421 33445
Q ss_pred chhhhcccchHHHHHHHHHHHcCC-CeEEeeccccCceeeehhhhcCCCcceee
Q 010815 283 ERLSRLNGYLSELAAAAFVCRRGV-QRVHLLDGTIGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~ll~~l~~~~~~GT~i~ 335 (500)
|.+|+++|..++++|+ .+++|.+ ++.+ .+++.++ .||.|.
T Consensus 271 --------M~pKveAA~~av~~g~g~~viI~~---~~~i-~~aL~G~-~GT~I~ 311 (312)
T PRK12686 271 --------MLPKVEAAIDFVESGEGKKAIITS---LEQA-KEALAGN-AGTHIT 311 (312)
T ss_pred --------cHHHHHHHHHHHHhCCCCEEEEeC---chHH-HHHhCCC-CCeEEe
Confidence 9999999999999865 4566665 4433 3555555 799984
No 22
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.97 E-value=6.1e-30 Score=254.90 Aligned_cols=241 Identities=20% Similarity=0.197 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
....++.|+.|...|+++|||||||||++.++.+....... -+++.+|+.+ .+++|.|.+.|+++|.+ +
T Consensus 30 v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~-----~~~~~pld~~~a~sqG~igy~l~~al~~-----~ 99 (313)
T PRK12454 30 VRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDV-----GIPPFPLDVAGAMTQGWIGYMIQQALRN-----E 99 (313)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhccc-----CCCCCccchhhhhhhHHHHHHHHHHHHH-----H
Confidence 34678999999999999999999999999998876555321 1577899999 99999999999999876 8
Q ss_pred hhhcCCCCCccccc----eeeccccEEE-EEEcCccCCc------------------ccceeeeE------eeeCHHHHH
Q 010815 86 IRRHGDSSRWHEVG----VSVASGNFLA-AKRKGVVDGV------------------DYGATGEV------KKVDVTRMR 136 (500)
Q Consensus 86 l~~~Gi~~~~~a~~----l~~~d~~~~~-~~~~~~~~~~------------------d~g~~G~v------~~vd~~~I~ 136 (500)
|.++|++.++.++- +...|..|.. .+|.|++... ..||.-.| +.+|.+.|+
T Consensus 100 l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~RrvV~SP~P~~ive~~aI~ 179 (313)
T PRK12454 100 LAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWRRVVPSPDPLGIVEIEVIK 179 (313)
T ss_pred HHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceEEEeCCCCCccccCHHHHH
Confidence 99999987665544 3334666776 5566765443 23344433 458999999
Q ss_pred HHHhCCCcEEEcCcc----cCCCCCeee----cCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHH
Q 010815 137 ERLDGGCLVILSNLG----YSSSGEVLN----CNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEA 203 (500)
Q Consensus 137 ~lL~~g~IPVi~~~~----~~~~g~~~~----i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~ 203 (500)
.||++|+|||+++.+ ++.++++++ +|+|.+|+.||.+|+||+|||||||||++ +++++|++++.+|+
T Consensus 180 ~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~~~~p~~~~i~~It~~e~ 259 (313)
T PRK12454 180 ALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLNYGKPDQKPLDKVTVEEA 259 (313)
T ss_pred HHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCCCCCCCCeEccccCHHHH
Confidence 999999999999553 556666666 57899999999999999999999999884 56899999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccc
Q 010815 204 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 283 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 283 (500)
++++.++. |++||
T Consensus 260 ~~~i~~g~-----------------------------------------------------------------~~~Gg-- 272 (313)
T PRK12454 260 KKYYEEGH-----------------------------------------------------------------FKAGS-- 272 (313)
T ss_pred HHHHhcCC-----------------------------------------------------------------cCCCC--
Confidence 99874321 34445
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceeec
Q 010815 284 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|.+||++|..++++|+.++||.+ ++.+ .+++.++ .||+|.+
T Consensus 273 -------M~pKv~AA~~~v~~gg~~a~I~~---~~~i-~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 273 -------MGPKILAAIRFVENGGKRAIIAS---LEKA-VEALEGK-TGTRIIP 313 (313)
T ss_pred -------hHHHHHHHHHHHHcCCCeEEECc---hHHH-HHHHCCC-CCeEeCC
Confidence 99999999999999999999985 3443 4555555 7999864
No 23
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.96 E-value=1.9e-28 Score=240.75 Aligned_cols=224 Identities=29% Similarity=0.377 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.+++++|+.++..|.++|||||||++++..+.+++...++.++.++++.....+++..++..+..+++ .|
T Consensus 15 ~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l 85 (248)
T cd02115 15 LRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAA---------AL 85 (248)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHH---------HH
Confidence 678999999999899999999999999999999999888877888999999888888888888888888 56
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCC---CCCeeecCH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSS---SGEVLNCNT 163 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~---~g~~~~i~~ 163 (500)
+++|++ +..+.+.+..+... +++++|.+..++.+.|+.+|++|.|||+++.+... .++..++++
T Consensus 86 ~~~gi~----a~~~~~~~~~~~~~---------~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~s 152 (248)
T cd02115 86 EQHGIK----AVPLDLTQAGFASP---------NQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGS 152 (248)
T ss_pred HhCCCC----eEEEchHHcCeEeC---------CCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCH
Confidence 788988 77887777655543 46889999999999999999999999999987765 677889999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCC
Q 010815 164 YEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 236 (500)
Q Consensus 164 D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
|.+|+.+|.+|+|++|+|+|||||++ +++++|++++.+|++++...+
T Consensus 153 D~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g-------------------------- 206 (248)
T cd02115 153 DSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAG-------------------------- 206 (248)
T ss_pred HHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcC--------------------------
Confidence 99999999999999999999999983 248999999999888875321
Q ss_pred CCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 010815 237 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 316 (500)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (500)
+ |..|++++..++++|+ +++|+|+..
T Consensus 207 --------------------------------~---------------------~~~k~~a~~~~~~~~~-~v~I~~~~~ 232 (248)
T cd02115 207 --------------------------------A---------------------MVLKPKAADPAARAGI-PVRIANTEN 232 (248)
T ss_pred --------------------------------C---------------------CccCHHHHHHHHHcCC-cEEEEeCCC
Confidence 2 8899999999999996 599999999
Q ss_pred CceeeehhhhcCCCccee
Q 010815 317 GGVLLLELFKRDGMGTMV 334 (500)
Q Consensus 317 ~~~ll~~l~~~~~~GT~i 334 (500)
|+++ ++|++++.||+|
T Consensus 233 ~~~l--~~~~~~~~GT~I 248 (248)
T cd02115 233 PGAL--ALFTPDGGGTLI 248 (248)
T ss_pred cccc--cccCCCCCCCCC
Confidence 9876 889888899986
No 24
>PRK09411 carbamate kinase; Reviewed
Probab=99.95 E-value=1.1e-27 Score=236.12 Aligned_cols=228 Identities=21% Similarity=0.166 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhh
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
...++.|+.|... +++||+||+|||++.++.+...... .++.+|+++ .+++|.|+|+|+++|
T Consensus 30 ~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~~~-------~~~~pld~~~a~sqG~iGy~l~q~l--------- 92 (297)
T PRK09411 30 ASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAWKE-------VEPYPLDVLVAESQGMIGYMLAQSL--------- 92 (297)
T ss_pred HHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhhcC-------CCCCCchhhhhhcccHHHHHHHHHH---------
Confidence 3568889999988 9999999999999998877655422 378999999 999999999999964
Q ss_pred hhcCCCCCccccce----eeccccEEE-EEEcCccCC----------------cccceeeeE-------eeeCHHHHHHH
Q 010815 87 RRHGDSSRWHEVGV----SVASGNFLA-AKRKGVVDG----------------VDYGATGEV-------KKVDVTRMRER 138 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l----~~~d~~~~~-~~~~~~~~~----------------~d~g~~G~v-------~~vd~~~I~~l 138 (500)
...++..++.++-+ ...|..|.. .+|.|.+.. .|..+.++| +.||.+.|+.|
T Consensus 93 ~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~~~I~~L 172 (297)
T PRK09411 93 SAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELL 172 (297)
T ss_pred HHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECHHHHHHH
Confidence 45566654544443 334666766 555564422 244467777 88999999999
Q ss_pred HhCCCcEEEc-----CcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHHHHHHH
Q 010815 139 LDGGCLVILS-----NLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 139 L~~g~IPVi~-----~~~~~~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~~~~~~ 208 (500)
|++|+|||++ |++.+.+|...|+|+|.+|+.||.+|+||+|+|||||||+. +++++|++++.+++++++.
T Consensus 173 l~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~~p~~~~I~~it~~e~~~~~~ 252 (297)
T PRK09411 173 LKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAK 252 (297)
T ss_pred HHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCCCCCCcCCCCcCHHHHHHhcc
Confidence 9999999987 77766568889999999999999999999999999999884 4578999999999877742
Q ss_pred hhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhc
Q 010815 209 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 288 (500)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 288 (500)
. +| |
T Consensus 253 ~--------------------------------------------------------~G-g------------------- 256 (297)
T PRK09411 253 A--------------------------------------------------------DG-A------------------- 256 (297)
T ss_pred C--------------------------------------------------------CC-C-------------------
Confidence 1 22 3
Q ss_pred ccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceee
Q 010815 289 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~ 335 (500)
|.+|+++|..++++|.++++|.+ ++.+ .+++.++ .||+|.
T Consensus 257 --M~pKVeAA~~~v~~~g~~a~I~~---l~~~-~~~l~G~-~GT~I~ 296 (297)
T PRK09411 257 --MGPKVTAVSGYVRSRGKPAWIGA---LSRI-EETLAGE-AGTCIS 296 (297)
T ss_pred --cHHHHHHHHHHHHhCCCeEEECC---hhHH-HHHHCCC-CCeEEe
Confidence 99999999999999888888864 3433 3555554 699984
No 25
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.95 E-value=3.3e-27 Score=235.73 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+...++.|+.|.+.|+++|||||||||++.++........ .++..+|+.+ .+.+|++.+.|..+|.+ +
T Consensus 27 ~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~------~~~~~pld~~~a~~~G~ig~~~~~al~~-----~ 95 (308)
T cd04235 27 VKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAE------KVPAYPLDVCGAMSQGMIGYMLQQALDN-----E 95 (308)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccc------cCCCCCcchhcchhhHHHHHHHHHHHHH-----H
Confidence 4578899999999999999999999999999887665532 3677889999 89999999999998876 8
Q ss_pred hhhcCCCCCccccc----eeeccccEEE-EEEcCccCCc--------c----------cceeee------EeeeCHHHHH
Q 010815 86 IRRHGDSSRWHEVG----VSVASGNFLA-AKRKGVVDGV--------D----------YGATGE------VKKVDVTRMR 136 (500)
Q Consensus 86 l~~~Gi~~~~~a~~----l~~~d~~~~~-~~~~~~~~~~--------d----------~g~~G~------v~~vd~~~I~ 136 (500)
|.++|++.++.++- +...|..|-. .+|.|.+... . .||.-. ++.++.+.|+
T Consensus 96 l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrvV~SP~P~~iv~~~~I~ 175 (308)
T cd04235 96 LPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRVVPSPKPKDIVEIEAIK 175 (308)
T ss_pred HHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceeeeCCCCCccccCHHHHH
Confidence 89999885444332 3333555655 4455644331 1 223332 3458999999
Q ss_pred HHHhCCCcEEEc-----CcccCCCCCe----eecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHH
Q 010815 137 ERLDGGCLVILS-----NLGYSSSGEV----LNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQE 202 (500)
Q Consensus 137 ~lL~~g~IPVi~-----~~~~~~~g~~----~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e 202 (500)
.||++|+|||++ |+..+. +.. .++|+|++|+.||.+|+||+|+|+|||||++ +++++|++++.+|
T Consensus 176 ~Ll~~g~IpI~~GggGiPv~~~~-~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~~pda~~i~~Is~~e 254 (308)
T cd04235 176 TLVDNGVIVIAAGGGGIPVVREG-GGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFGKPNQKALEQVTVEE 254 (308)
T ss_pred HHHHCCCEEEEECCCccCEEEcC-CceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCCCCCCeEcCCcCHHH
Confidence 999999999998 555543 433 3578999999999999999999999999984 4589999999999
Q ss_pred HHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCcccccccccccc
Q 010815 203 ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQ 282 (500)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 282 (500)
+.+++.++. |.+||
T Consensus 255 ~~~l~~~g~-----------------------------------------------------------------~~tGG- 268 (308)
T cd04235 255 LEKYIEEGQ-----------------------------------------------------------------FAPGS- 268 (308)
T ss_pred HHHHHhcCc-----------------------------------------------------------------cccCC-
Confidence 888864321 33444
Q ss_pred chhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceee
Q 010815 283 ERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~ 335 (500)
|.+|+++|..++++|..+++|.+ ++++ .+++.++ .||.|.
T Consensus 269 --------M~pKv~aA~~~a~~gg~~v~I~~---~~~i-~~aL~G~-~GT~I~ 308 (308)
T cd04235 269 --------MGPKVEAAIRFVESGGKKAIITS---LENA-EAALEGK-AGTVIV 308 (308)
T ss_pred --------cHHHHHHHHHHHHhCCCeEEECC---HHHH-HHHHCCC-CCeEEC
Confidence 99999999999999877888877 4443 4555555 699873
No 26
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.95 E-value=4.6e-27 Score=225.76 Aligned_cols=242 Identities=19% Similarity=0.169 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+...++.|+.|...|+++||+||+|||++.++.......+.. -+++.+|+++ .+++|+|+++|+++|.+ +
T Consensus 28 v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~----~~p~~PLd~~~AmsQG~IGy~l~qal~n-----~ 98 (312)
T COG0549 28 VKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEK----GVPAYPLDVLVAMSQGMIGYMLQQALRN-----E 98 (312)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhcccc----CCCCccHHHHhHhhhhHHHHHHHHHHHH-----H
Confidence 346788999999999999999999999999998877754332 2678899998 99999999999999987 7
Q ss_pred hhhcCCCCCccccce----eeccccEEE-EEEcCccCCc------------------ccceeee------EeeeCHHHHH
Q 010815 86 IRRHGDSSRWHEVGV----SVASGNFLA-AKRKGVVDGV------------------DYGATGE------VKKVDVTRMR 136 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l----~~~d~~~~~-~~~~~~~~~~------------------d~g~~G~------v~~vd~~~I~ 136 (500)
|..+|+++++.++-+ ...|..|.. .+|.|+++.. +.||.-. ++.++.+.|+
T Consensus 99 l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~P~~IvE~~~Ik 178 (312)
T COG0549 99 LPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPKPVRIVEAEAIK 178 (312)
T ss_pred HhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCCCccchhHHHHH
Confidence 889998765555443 444777887 5667776442 2334443 3458999999
Q ss_pred HHHhCCCcEEEc-----CcccCCC---CCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHH
Q 010815 137 ERLDGGCLVILS-----NLGYSSS---GEVLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEA 203 (500)
Q Consensus 137 ~lL~~g~IPVi~-----~~~~~~~---g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~ 203 (500)
.|+++|.++|.+ |+..+.. |-.-.||.|..++.||..++||.|++|||||.++ |+.+.+.+++++|+
T Consensus 179 ~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gkp~q~~L~~v~~~e~ 258 (312)
T COG0549 179 ALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGKPNQQALDRVTVDEM 258 (312)
T ss_pred HHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCCccchhhcccCHHHH
Confidence 999999999987 4444433 4567899999999999999999999999999763 67899999999999
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccc
Q 010815 204 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 283 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 283 (500)
++|+.++ +|+.|+
T Consensus 259 ~~yl~eg-----------------------------------------------------------------~Fa~GS-- 271 (312)
T COG0549 259 EKYLAEG-----------------------------------------------------------------QFAAGS-- 271 (312)
T ss_pred HHHHhcC-----------------------------------------------------------------CCCCCC--
Confidence 9998663 388888
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceeec
Q 010815 284 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|.+|++||+.+++++-+++.|.+- ++ +.+.+.+ ..||.|.+
T Consensus 272 -------M~PKVeAai~Fv~~~gk~A~ItsL---e~-~~~~l~g-~~GT~I~~ 312 (312)
T COG0549 272 -------MGPKVEAAISFVENTGKPAIITSL---EN-AEAALEG-KAGTVIVP 312 (312)
T ss_pred -------ccHHHHHHHHHHHcCCCceEECcH---HH-HHHHhcc-CCCcEecC
Confidence 999999999999999888877642 22 2344443 56999864
No 27
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.95 E-value=9.3e-27 Score=235.41 Aligned_cols=244 Identities=18% Similarity=0.207 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.+++++|+.|++.|+++|||||||+|++..+......+++.+ ++++......+...++.+.+.+.+.|++ .|
T Consensus 28 i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~a~~qg~l~~~l~~~~~~-----~l 100 (314)
T PRK12353 28 VKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKN--KVPAMPLDVCGAMSQGYIGYHLQNALRN-----EL 100 (314)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCC--CCCCchhHHHHHHHhHHHHHHHHHHHHH-----HH
Confidence 6789999999999999999999999998887777666654433 4555444444578888888877777765 67
Q ss_pred hhcCCCCCccccc----eeeccccE-EEEEEcCcc------------CCcccce-eee-Eee----------eCHHHHHH
Q 010815 87 RRHGDSSRWHEVG----VSVASGNF-LAAKRKGVV------------DGVDYGA-TGE-VKK----------VDVTRMRE 137 (500)
Q Consensus 87 ~~~Gi~~~~~a~~----l~~~d~~~-~~~~~~~~~------------~~~d~g~-~G~-v~~----------vd~~~I~~ 137 (500)
..+|+..++..+- ++..|..| ..++|.|++ +|.||.+ +++ .++ +|.+.|+.
T Consensus 101 ~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~v~sp~p~~~v~~~~i~~ 180 (314)
T PRK12353 101 LKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGYRRVVPSPKPVDIVEIEAIKT 180 (314)
T ss_pred HhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCceeEeccCCCCccccccHHHHHH
Confidence 7777753332222 23333335 446667766 4445554 343 333 79999999
Q ss_pred HHhCCCcEEEcCcccCC----CCCe----eecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHHH
Q 010815 138 RLDGGCLVILSNLGYSS----SGEV----LNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEAD 204 (500)
Q Consensus 138 lL~~g~IPVi~~~~~~~----~g~~----~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~~ 204 (500)
||+.|+|||+++.+..+ ++.. +++|+|++|+++|.+|+||+|+|+|||||++ +++++|++++.++++
T Consensus 181 lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~~~a~~i~~i~~~e~~ 260 (314)
T PRK12353 181 LVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGKPNQKKLDEVTVSEAE 260 (314)
T ss_pred HHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCCCCCeECcCcCHHHHH
Confidence 99999999999663222 2222 3699999999999999999999999999984 358999999988888
Q ss_pred HHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccch
Q 010815 205 SLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQER 284 (500)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 284 (500)
+++..+. +.+||
T Consensus 261 ~~~~~~~-----------------------------------------------------------------~~tGG--- 272 (314)
T PRK12353 261 KYIEEGQ-----------------------------------------------------------------FAPGS--- 272 (314)
T ss_pred HHHhcCC-----------------------------------------------------------------cCCCC---
Confidence 8764321 11223
Q ss_pred hhhcccchHHHHHHHHHH-HcCCCeEEeeccccCceeeehhhhcCCCcceeec
Q 010815 285 LSRLNGYLSELAAAAFVC-RRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|.+||++|..++ +++...++|++ ++.+ ..++.++ .||.|.+
T Consensus 273 ------M~~Kl~aA~~a~~~~~g~~v~I~~---~~~i-~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 273 ------MLPKVEAAISFVESRPGRKAIITS---LEKA-KEALEGK-AGTVIVK 314 (314)
T ss_pred ------cHHHHHHHHHHHHHcCCCEEEECC---chHH-HHHhCCC-CCeEecC
Confidence 999999999999 55555688987 4544 4555555 7999864
No 28
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.95 E-value=9.9e-27 Score=233.57 Aligned_cols=239 Identities=20% Similarity=0.190 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+..+++.|+.|+..|+++|||||||||++....++...+ ..++..+++.+ .+.++++.+.+.++|.+ +
T Consensus 28 i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~------~~~~~~p~~~~~A~~qg~lg~~~~~~l~~-----~ 96 (310)
T TIGR00746 28 VRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAAD------SEVPAMPLDVLGAMSQGMIGYMLQQALNN-----E 96 (310)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhcccccc------ccCCCCcchHHHHhhHHHHHHHHHHHHHH-----H
Confidence 467999999999999999999999999998765543322 12456678998 89999999999988765 6
Q ss_pred hhhcCCCCCccc----cceeeccccEEE-EEEcCccCCc------------------ccceeeeE------eeeCHHHHH
Q 010815 86 IRRHGDSSRWHE----VGVSVASGNFLA-AKRKGVVDGV------------------DYGATGEV------KKVDVTRMR 136 (500)
Q Consensus 86 l~~~Gi~~~~~a----~~l~~~d~~~~~-~~~~~~~~~~------------------d~g~~G~v------~~vd~~~I~ 136 (500)
|.++|++.++.. +.++..|..|-. .++.|.+... .+||.-.| +.++.+.|+
T Consensus 97 l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rrvv~sp~p~~iv~~~~I~ 176 (310)
T TIGR00746 97 LPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRRVVPSPRPKDIVEAETIK 176 (310)
T ss_pred HHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceEeecCCCchhhccHHHHH
Confidence 778887754443 334444555555 3333433221 12333322 358999999
Q ss_pred HHHhCCCcEEEcCcccC----CC----CCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHH
Q 010815 137 ERLDGGCLVILSNLGYS----SS----GEVLNCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEA 203 (500)
Q Consensus 137 ~lL~~g~IPVi~~~~~~----~~----g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~ 203 (500)
.||++|+|+|.++-+.. .+ +...|+|+|++|+.+|.+|+||+|||||||||++ +++++|++++.+|+
T Consensus 177 ~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~~~p~a~~i~~it~~e~ 256 (310)
T TIGR00746 177 TLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINYGKPDEKALREVTVEEL 256 (310)
T ss_pred HHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCCCCCCCcCCcCcCHHHH
Confidence 99999985444432221 12 3345899999999999999999999999999984 46899999999988
Q ss_pred HHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccc
Q 010815 204 DSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQE 283 (500)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 283 (500)
++++.++ .|.+||
T Consensus 257 ~~~~~~g-----------------------------------------------------------------~~~tGg-- 269 (310)
T TIGR00746 257 EDYYKAG-----------------------------------------------------------------HFAAGS-- 269 (310)
T ss_pred HHHHhcC-----------------------------------------------------------------CcCCCC--
Confidence 8886321 133444
Q ss_pred hhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceee
Q 010815 284 RLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~ 335 (500)
|.+|+++|..+|++|+.++||++ ++. +.+++.++ .||.|.
T Consensus 270 -------M~~Kl~AA~~~~~~g~~~v~I~~---~~~-i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 270 -------MGPKVEAAIEFVESGGKRAIITS---LEN-AVEALEGK-AGTRVT 309 (310)
T ss_pred -------cHHHHHHHHHHHHhCCCeEEEec---hHH-HHHHHCCC-CCcEEe
Confidence 99999999999999988999997 444 45666666 899985
No 29
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=217.47 Aligned_cols=222 Identities=14% Similarity=0.139 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..+|.+|+. ..-.++|||||||+|+|+.+++++++ ...+ +.++..+..++.+|.++|+.+++ +|
T Consensus 26 l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~~~~-~~~~---~~s~~G~~~~~~am~~L~~~V~~---------~l 90 (252)
T COG1608 26 LRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEFGLE-GLKN---YLSPLGFSLTHLAMLELNSIVVD---------AL 90 (252)
T ss_pred HHHHHHHHhc--CCcccEEEEecCccccCHHHHHhCcc-cccc---ccCccchHHHHHHHHHHHHHHHH---------HH
Confidence 3455555554 33357999999999999999999993 3222 45678888899999999999999 57
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCccc-CCCCCeeecCHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY-SSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~-~~~g~~~~i~~D~ 165 (500)
.+.|++ ++...+.+ +.+ +.|++.....+.|+.+|+.|||||++++++ +.+..+.++|+|+
T Consensus 91 ~~~Gv~----av~~~P~s--~~~-------------~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDd 151 (252)
T COG1608 91 LDAGVR----AVSVVPIS--FST-------------FNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDD 151 (252)
T ss_pred HhcCCc----cccccCcc--eee-------------cCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccH
Confidence 888987 55444433 111 235565667899999999999999998765 4455899999999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-CCCcccccc-CHHHHHHHHH-hhhhhhhHHHhhhhhhhcccccccCCCCCCcccc
Q 010815 166 VATACALAIEADKLICIIDGPILD-ESGHLIRFL-TLQEADSLIR-QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVY 242 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i-~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (500)
++.+||++|+||+++|+|||||++ .+++.++++ ...+++.... .++...
T Consensus 152 Iv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~---------------------------- 203 (252)
T COG1608 152 IVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGT---------------------------- 203 (252)
T ss_pred HHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcc----------------------------
Confidence 999999999999999999999984 344444444 3445554321 111111
Q ss_pred ccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCceeee
Q 010815 243 SSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLL 322 (500)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~ 322 (500)
..+|| |..||+++....++|.+ |+++||+.|++| .
T Consensus 204 ----------------------------------DVTGG---------i~~Kl~~~~~~~~~~~~-vyi~ng~~~~ni-~ 238 (252)
T COG1608 204 ----------------------------------DVTGG---------IAKKLEALLEIARYGKE-VYIFNGNKPENI-Y 238 (252)
T ss_pred ----------------------------------cchhh---------HHHHHHHHHHHHhcCce-EEEECCCCHHHH-H
Confidence 23344 99999999999999998 999999999986 5
Q ss_pred hhhhcCCCcceee
Q 010815 323 ELFKRDGMGTMVA 335 (500)
Q Consensus 323 ~l~~~~~~GT~i~ 335 (500)
.++.++..||+|.
T Consensus 239 ~~l~G~~vGT~I~ 251 (252)
T COG1608 239 RALRGENVGTRID 251 (252)
T ss_pred HHhcCCCCceEec
Confidence 5566778899985
No 30
>PRK12354 carbamate kinase; Reviewed
Probab=99.94 E-value=1.1e-26 Score=231.04 Aligned_cols=235 Identities=21% Similarity=0.197 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCchhh
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
...++.|+.|.. |+++||+||||||++.++.+..... ..++.+|+.+ .++++.++++++++|.+ +|
T Consensus 29 ~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~-------~~~~~pl~~~~a~sqg~iGy~l~q~l~~-----~l 95 (307)
T PRK12354 29 RIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYK-------DVTPYPLDVLGAETEGMIGYMLEQELGN-----LL 95 (307)
T ss_pred HHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhc-------CCCCCCcchhcccccchHHHHHHHHHHH-----Hh
Confidence 367888998988 9999999999999886655443321 1267889998 89999999999998765 45
Q ss_pred hhcCCCCCccccceeeccccEEE-EEEcCccCC----------------cccceeeeEe-------eeCHHHHHHHHhCC
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLA-AKRKGVVDG----------------VDYGATGEVK-------KVDVTRMRERLDGG 142 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~-~~~~~~~~~----------------~d~g~~G~v~-------~vd~~~I~~lL~~g 142 (500)
.+..+.+-+..+-+...|..|.. .++.|++.. .|..+.++|. .++.+.|+.||++|
T Consensus 96 ~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P~~ive~~~I~~Ll~~g 175 (307)
T PRK12354 96 PERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRPKRIVEIRPIRWLLEKG 175 (307)
T ss_pred cCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCCcceeCHHHHHHHHHCC
Confidence 44333322222333344555555 334443322 2333445544 69999999999999
Q ss_pred CcEEEc-----CcccCCCCCee----ecCHHHHHHHHHHHcCCCEEEEEecCcccC-----CCCccccccCHHHHHHHHH
Q 010815 143 CLVILS-----NLGYSSSGEVL----NCNTYEVATACALAIEADKLICIIDGPILD-----ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 143 ~IPVi~-----~~~~~~~g~~~----~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-----~~g~~I~~i~~~e~~~~~~ 208 (500)
+|||++ |+..+..+..+ ++|+|.+|+.||.+|+||+|+|||||||++ |++++|++++.+|++++
T Consensus 176 ~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~~p~~k~i~~it~~e~~~~-- 253 (307)
T PRK12354 176 HLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWGKPTQRAIAQATPDELREL-- 253 (307)
T ss_pred CEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCCCCCCeECCCCCHHHHHhh--
Confidence 998886 77665445444 468999999999999999999999999884 34689999998888766
Q ss_pred hhhhhhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhc
Q 010815 209 QRVKQSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRL 288 (500)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 288 (500)
. |++||
T Consensus 254 -~------------------------------------------------------------------f~~Gg------- 259 (307)
T PRK12354 254 -G------------------------------------------------------------------FAAGS------- 259 (307)
T ss_pred -C------------------------------------------------------------------CCcCC-------
Confidence 1 23344
Q ss_pred ccchHHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceeeccc
Q 010815 289 NGYLSELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~d~ 338 (500)
|.+|+++|..++++|.++++|.+ .+. +.+++.++ .||.|.++.
T Consensus 260 --M~pKV~AA~~~~~~gg~~viI~~---~~~-l~~al~G~-~GT~I~~~~ 302 (307)
T PRK12354 260 --MGPKVEAACEFVRATGKIAGIGS---LED-IQAILAGE-AGTRISPET 302 (307)
T ss_pred --hHHHHHHHHHHHHhCCCEEEECC---HHH-HHHHHCCC-CceEEecCC
Confidence 99999999999998888888754 333 45666554 799998744
No 31
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.94 E-value=8.9e-26 Score=221.02 Aligned_cols=176 Identities=34% Similarity=0.442 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHH-----HHHHhhCCC
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRM-----MIEAKLSPG 80 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~-----~i~~~l~~~ 80 (500)
+.+++++|+.+.+.|.++|||||+|++++.+++++++.+++.++.|+|+....... +.++..+|. .+++
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~~----- 93 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIVS----- 93 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHHH-----
Confidence 78999999999999999999999999999999999999999999999999998887 788888998 7766
Q ss_pred CCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcc-cCCCCCe-
Q 010815 81 PPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLG-YSSSGEV- 158 (500)
Q Consensus 81 ~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~-~~~~g~~- 158 (500)
.+..++.+ ++++.+.+.++....+.. ..++.+.|+.+|++|+|||++|.. .+..|+.
T Consensus 94 ----~~~~~~~~----~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~ 152 (242)
T PF00696_consen 94 ----AGERLGAH----AVGLSLSDGGISAAKRDA-------------REVDKEAIRELLEQGIIPVVSGFAGIDDDGEVT 152 (242)
T ss_dssp ----HHHHCTHH----EEEHHHTGGTEEEEEEES-------------SEEHHHHHHHHHHTTSEEEEESEEEEETTSTEE
T ss_pred ----hhhhhhHH----HHhhhhhcccchhhhhhh-------------hhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcc
Confidence 35566655 788888888777765421 167899999999999999999987 7888988
Q ss_pred --eecCHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHH
Q 010815 159 --LNCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 159 --~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~ 208 (500)
.++++|.+|+.||.+|+|++|+|+|||||+. +++++|++|+.+|++++..
T Consensus 153 ~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~ 211 (242)
T PF00696_consen 153 TLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELAS 211 (242)
T ss_dssp EEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHh
Confidence 9999999999999999999999999999883 3789999999999999874
No 32
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.90 E-value=3.9e-23 Score=206.39 Aligned_cols=231 Identities=16% Similarity=0.139 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHHHcCCeEE-EEECChHHHHHHHHHcCC-Ccee----eCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCC
Q 010815 7 WLVMVQDIAFLHHLGIRFV-LVPGTHVQIDKLLSERGH-EAKY----LGRYRITDSESLAAAMEAAGGIRMMIEAKLSPG 80 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~V-IVHGgG~~i~~~~~~~g~-~~~~----~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~ 80 (500)
+..++++|+.|+..|.++| ++||++++++..+..++. ...+ ..+.++..+..+..-+++...-+..+.+.+.+
T Consensus 33 l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~- 111 (284)
T cd04256 33 LASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEA- 111 (284)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHH-
Confidence 5789999999999999999 899999999999976643 1101 11111111222221122222223344443332
Q ss_pred CCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCC------
Q 010815 81 PPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSS------ 154 (500)
Q Consensus 81 ~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~------ 154 (500)
.|.++|++ +..+-.....|...+ ......+.|+.||+.|+|||+++++...
T Consensus 112 ----~f~~~~~~----~~q~llt~~d~~~~~---------------~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~ 168 (284)
T cd04256 112 ----MFTQYGIT----VAQVLVTKPDFYDEQ---------------TRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPD 168 (284)
T ss_pred ----HHHHcCCc----HHHeeeeccccccHH---------------HHHHHHHHHHHHHHCCCEEEEeCCCccccccccc
Confidence 57778876 222222222222211 1224578999999999999999643322
Q ss_pred -CCCe--eecCHHHHHHHHHHHcCCCEEEEEecCcccC------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhh
Q 010815 155 -SGEV--LNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVA 225 (500)
Q Consensus 155 -~g~~--~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~ 225 (500)
+++. .++|+|++|+.||.+++||+|+|+|||||++ |++++|++++..+.+.+... .
T Consensus 169 ~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~-~-------------- 233 (284)
T cd04256 169 EDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFG-T-------------- 233 (284)
T ss_pred ccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcc-c--------------
Confidence 1233 4599999999999999999999999999984 35899999998665444211 0
Q ss_pred cccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcC
Q 010815 226 EEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRG 305 (500)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 305 (500)
+++ +.+|| |.+||.+|..|.++|
T Consensus 234 -----------------------------------~s~-------------~gtGG---------M~~Kl~Aa~~a~~~G 256 (284)
T cd04256 234 -----------------------------------KSR-------------VGTGG---------MEAKVKAALWALQGG 256 (284)
T ss_pred -----------------------------------ccC-------------cccCC---------cHHHHHHHHHHHHCC
Confidence 011 12333 999999999999999
Q ss_pred CCeEEeeccccCceeeehhhhcCCCcceee
Q 010815 306 VQRVHLLDGTIGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 306 ~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~ 335 (500)
++ ++|++|+.|+. +..++.++..||.|.
T Consensus 257 i~-v~I~~G~~~~~-i~~~l~G~~~GT~~~ 284 (284)
T cd04256 257 TS-VVITNGMAGDV-ITKILEGKKVGTFFT 284 (284)
T ss_pred Ce-EEEEcCCCccH-HHHHHcCCCCCEEeC
Confidence 97 89999999987 467777778899983
No 33
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.90 E-value=9.2e-23 Score=211.38 Aligned_cols=223 Identities=20% Similarity=0.253 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.+++++|+.++..|+++||||||+ +...+.++++..++. +.+..+.+. ..-+..++..+.+ +|
T Consensus 32 i~~la~~I~~l~~~g~~vViV~sGa--i~~g~~~l~l~~~~~---~~~~~qa~a--avGq~~L~~~~~~---------~l 95 (372)
T PRK05429 32 IAELARQIAALRAAGHEVVLVSSGA--VAAGRERLGLPERPK---TLAEKQAAA--AVGQSRLMQAYEE---------LF 95 (372)
T ss_pred HHHHHHHHHHHHHCCCeEEEEcccH--hhhhHhhcCCCCCCC---chHHHHHHH--HHhHHHHHHHHHH---------HH
Confidence 5689999999999999999999884 344455677764321 122222111 2223445555555 67
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeC-HHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd-~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
+++|++ +.++...+..|.... ..++ .+.|+.||+.|+|||+++++.....+..++|+|.
T Consensus 96 ~~~gi~----~~qil~t~~d~~~~~----------------~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~ 155 (372)
T PRK05429 96 ARYGIT----VAQILLTRDDLEDRE----------------RYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDT 155 (372)
T ss_pred HHCCCC----EEEEEeehhHhhhhh----------------HhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHH
Confidence 889987 445433333332111 1233 5889999999999999976554445566899999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCH--HHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 236 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
+|+.||.+|+||+|+|+|||||++ |++++|++++. +++++++...
T Consensus 156 ~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~-------------------------- 209 (372)
T PRK05429 156 LSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGA-------------------------- 209 (372)
T ss_pred HHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCC--------------------------
Confidence 999999999999999999999983 35899999986 4566664221
Q ss_pred CCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 010815 237 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 316 (500)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (500)
++. +.+|| |.+||++|..|.++|++ ++|+|++.
T Consensus 210 ------------------------~~~-------------~gtGG---------M~~Kl~aa~~a~~~Gi~-v~I~~g~~ 242 (372)
T PRK05429 210 ------------------------GSG-------------LGTGG---------MATKLEAARIATRAGIP-VVIASGRE 242 (372)
T ss_pred ------------------------CCC-------------cCcCC---------cHHHHHHHHHHHHCCCe-EEEEcCCC
Confidence 011 23344 99999999999999998 99999999
Q ss_pred CceeeehhhhcCCCcceeecccc
Q 010815 317 GGVLLLELFKRDGMGTMVASDLY 339 (500)
Q Consensus 317 ~~~ll~~l~~~~~~GT~i~~d~~ 339 (500)
|+. +.+++.++..||.|.+...
T Consensus 243 ~~~-l~~~l~g~~~GT~i~~~~~ 264 (372)
T PRK05429 243 PDV-LLRLLAGEAVGTLFLPQEK 264 (372)
T ss_pred ccH-HHHHhcCCCCCEEEeeCCc
Confidence 985 5677877888999987543
No 34
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.90 E-value=3.9e-23 Score=212.70 Aligned_cols=222 Identities=21% Similarity=0.283 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..++++|+.|++.|+++||||||+.+++. .+++.. ++.+++..+++..+ -+..++..+.. .|
T Consensus 29 i~~la~~I~~l~~~G~~vvlVsSGava~G~--~~l~~~----~~~~~~~~qalaav--Gq~~l~~~~~~---------~f 91 (368)
T PRK13402 29 LLGLVQQIVYLKDQGHQVVLVSSGAVAAGY--HKLGFI----DRPSVPEKQAMAAA--GQGLLMATWSK---------LF 91 (368)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCChhhcCc--cccCCC----CCCCccHHHHHHHh--hHHHHHHHHHH---------HH
Confidence 568999999999999999999999988776 344432 22356666665555 22224455555 57
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
+++|++ +.++...+..|...+ .| . .+ .++|+.||+.|+|||+++++.....+..+.|+|++
T Consensus 92 ~~~g~~----~aqvLlT~~d~~~~~--------~y---~---n~-~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~l 152 (368)
T PRK13402 92 LSHGFP----AAQLLLTHGDLRDRE--------RY---I---NI-RNTINVLLERGILPIINENDAVTTDRLKVGDNDNL 152 (368)
T ss_pred HHCCCe----EEEEEEecchhhhHH--------HH---H---HH-HHHHHHHHHCCcEEEEeCCCcEeecccccCChHHH
Confidence 888987 433322222221110 00 0 01 37999999999999999865555566778899999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC---C----CCccccccCH--HHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCC
Q 010815 167 ATACALAIEADKLICIIDGPILD---E----SGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDS 237 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (500)
|+.+|.+|+||.|+|+|||||++ | ++++|++|+. +++..+...
T Consensus 153 Aa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~---------------------------- 204 (368)
T PRK13402 153 SAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGG---------------------------- 204 (368)
T ss_pred HHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcc----------------------------
Confidence 99999999999999999999983 3 5899999975 444444211
Q ss_pred CccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccC
Q 010815 238 IGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIG 317 (500)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 317 (500)
.++++++ || |.+||+||..|.++|++ ++|++++.|
T Consensus 205 ----------------------~~s~~gt-------------GG---------M~~Kl~Aa~~a~~~gi~-v~I~~g~~~ 239 (368)
T PRK13402 205 ----------------------AGSNVGT-------------GG---------MRTKIQAAKIAMSHGIE-TFIGNGFTA 239 (368)
T ss_pred ----------------------cccCcCc-------------CC---------chHHHHHHHHHHHcCCc-EEEEcCCCc
Confidence 0112223 33 99999999999999998 889999999
Q ss_pred ceeeehhhhcCCCcceeeccc
Q 010815 318 GVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 318 ~~ll~~l~~~~~~GT~i~~d~ 338 (500)
+. +.+++.++..||.|.+..
T Consensus 240 ~~-l~~~l~g~~~GT~i~~~~ 259 (368)
T PRK13402 240 DI-FNQLLKGQNPGTYFTPEE 259 (368)
T ss_pred hH-HHHHhcCCCCceEEecCC
Confidence 85 567777778899997754
No 35
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.90 E-value=3.7e-22 Score=195.43 Aligned_cols=174 Identities=17% Similarity=0.221 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEC-ChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHH-HHHhhCCCCCch
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPG-THVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM-IEAKLSPGPPIC 84 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHG-gG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~-i~~~l~~~~~~~ 84 (500)
+.+++++|+.++..|+++||||| +|+.++.+++..+....+ .+...++++......+|.. +.+
T Consensus 17 ~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~------~~~~~~~~i~~~Ge~~~~~~~~~--------- 81 (239)
T cd04246 17 IKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPR------PSPRELDMLLSTGEQISAALLAM--------- 81 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccC------CCHHHHHHHHHHhHHHHHHHHHH---------
Confidence 67899999999999999999888 688999988877765443 2566677664433356655 444
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCeeec--
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC-- 161 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i-- 161 (500)
.|+++|++ ++++++.+..+++..+. + .|.+..++.+.|+.++++|+|||+++. +.+.+++++++
T Consensus 82 ~l~~~g~~----a~~l~~~~~~l~~~~~~--------~-~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~ 148 (239)
T cd04246 82 ALNRLGIK----AISLTGWQAGILTDDHH--------G-NARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGR 148 (239)
T ss_pred HHHhCCCC----eEEeccccCCEEecCCC--------C-ceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCC
Confidence 57899988 88999988777775432 1 477888899999999999999999996 66778899999
Q ss_pred -CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHH
Q 010815 162 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 162 -~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~ 208 (500)
|+|.+|+.||.+|+|++|+|+|||||++ +++++|++++.+|+++++.
T Consensus 149 g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~ 203 (239)
T cd04246 149 GGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMAS 203 (239)
T ss_pred CChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHh
Confidence 8999999999999999999999999984 3689999999999888853
No 36
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.89 E-value=1.1e-22 Score=200.51 Aligned_cols=218 Identities=19% Similarity=0.202 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECC-hHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCch
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPIC 84 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGg-G~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~~ 84 (500)
+.++++.|+.++..|+++|||||| +++.+. .+++..++ ......+.+ ..-+..++..+..
T Consensus 23 i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~---~~~~~~~~------~~~~~~~~~~~~Gq~~l~~~~~~--------- 84 (251)
T cd04242 23 LASLVEQIAELRNQGKEVILVSSGAVAAGRQ---RLGLEKRP------KTLPEKQALAAVGQSLLMALYEQ--------- 84 (251)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCchhhChh---hhccCcCC------CchhHHHHHHHHhHHHHHHHHHH---------
Confidence 568899999999999999999965 454432 34443221 011122222 2222334444444
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHH
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 164 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D 164 (500)
+|+++|++ +..+...+..|...+ ......+.|+.||+.|+|||+++++....++..++|+|
T Consensus 85 ~l~~~Gi~----~~q~l~t~~~~~~~~---------------~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D 145 (251)
T cd04242 85 LFAQYGIK----VAQILLTRDDFEDRK---------------RYLNARNTLETLLELGVIPIINENDTVATEEIRFGDND 145 (251)
T ss_pred HHHHcCCe----EEEEEEehhHhcchH---------------HHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChH
Confidence 67889987 444333343333221 01112688999999999999997544333456688999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccC--HHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCC
Q 010815 165 EVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT--LQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHS 235 (500)
Q Consensus 165 ~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (500)
.+|+.||.+|+||+|+|+|||||++ |++++|++++ .++++++.....
T Consensus 146 ~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~------------------------ 201 (251)
T cd04242 146 RLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSG------------------------ 201 (251)
T ss_pred HHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccC------------------------
Confidence 9999999999999999999999983 3589999999 777777641100
Q ss_pred CCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccc
Q 010815 236 DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGT 315 (500)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 315 (500)
+ .+.+|| |.+|+++|..+.++|++ ++|+|++
T Consensus 202 --------------------------~-------------~~~tgg---------m~~Kl~a~~~a~~~gi~-v~I~~g~ 232 (251)
T cd04242 202 --------------------------S-------------SVGTGG---------MRTKLKAARIATEAGIP-VVIANGR 232 (251)
T ss_pred --------------------------c-------------CcccCC---------cHHHHHHHHHHHHCCCc-EEEEcCC
Confidence 0 133444 99999999999999998 9999999
Q ss_pred cCceeeehhhhcCCCcceee
Q 010815 316 IGGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 316 ~~~~ll~~l~~~~~~GT~i~ 335 (500)
.|+. +.+++.++..||.|.
T Consensus 233 ~~~~-i~~~l~g~~~GT~i~ 251 (251)
T cd04242 233 KPDV-LLDILAGEAVGTLFL 251 (251)
T ss_pred CCCH-HHHHHcCCCCCeEeC
Confidence 9985 567777778899884
No 37
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.89 E-value=5e-22 Score=194.49 Aligned_cols=174 Identities=17% Similarity=0.215 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECC-hHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGg-G~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.++..|+++|||||| |..+..++... .... +.++...++++......+|..+... .
T Consensus 17 ~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~-~~~~-----~~~~~~~~~~i~a~Ge~~~~~l~~~--------~ 82 (239)
T cd04261 17 IKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELA-KEIS-----PRPPARELDVLLSTGEQVSIALLAM--------A 82 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHH-HHhc-----cCCCHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 678999999999999999999997 67777666542 2111 3456777777655555777775333 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCeeec---
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC--- 161 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i--- 161 (500)
|+++|++ ++++++.+..+++..+. ..|++..++.+.|+.++++|+|||+++. +.+.++.++++
T Consensus 83 l~~~g~~----a~~l~~~~~~l~~~~~~---------~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg 149 (239)
T cd04261 83 LNRLGIK----AISLTGWQAGILTDGHH---------GKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRG 149 (239)
T ss_pred HHhCCCC----eEEechhhCCEEecCCC---------CcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCC
Confidence 7899998 89999998877775432 1577888899999999999999999998 77888999999
Q ss_pred CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccccCHHHHHHHH
Q 010815 162 NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLI 207 (500)
Q Consensus 162 ~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~~e~~~~~ 207 (500)
|+|.+|+.+|.+|+||+|+++|||||++ | ++++|++++.+|++++.
T Consensus 150 ~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~ 202 (239)
T cd04261 150 GSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMA 202 (239)
T ss_pred ChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHH
Confidence 9999999999999999999999999984 2 58899999999988875
No 38
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.89 E-value=1e-21 Score=192.74 Aligned_cols=175 Identities=17% Similarity=0.199 Sum_probs=142.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEE-----CChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHH--HHHHhhCC
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRM--MIEAKLSP 79 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVH-----GgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~--~i~~~l~~ 79 (500)
+.+++++|+.+...|.++|||| |||++++..+.+.+... +.|+|+ ..++.+ .+.|+++. .+++
T Consensus 17 ~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~----~~~~t~-~~~~~~-~~~Ge~~~~~~~~~---- 86 (244)
T cd04260 17 REQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAE----NSDISP-RELDLL-MSCGEIISAVVLTS---- 86 (244)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhh----cCCCCH-HHHHHH-HHHhHHHHHHHHHH----
Confidence 4689999999999999877777 78888888777665332 346666 456666 44666665 3655
Q ss_pred CCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCe
Q 010815 80 GPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEV 158 (500)
Q Consensus 80 ~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~ 158 (500)
.|+++|++ ++++++.+.++++.... + .|.+..++.+.|+.+|+.|+|||+++. +.+.+|+.
T Consensus 87 -----~l~~~Gi~----a~~l~~~~~~lit~~~~--------~-~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~ 148 (244)
T cd04260 87 -----TLRAQGLK----AVALTGAQAGILTDDNY--------S-NAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEV 148 (244)
T ss_pred -----HHHhCCCC----eEEechHHcCEEecCCC--------C-ceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCE
Confidence 57899998 99999999888876532 1 477888999999999999999999997 77888999
Q ss_pred eec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHh
Q 010815 159 LNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 209 (500)
Q Consensus 159 ~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~ 209 (500)
+++ ++|.+|+.||.+|+|++++|+|||||++ +++++|++|+.+|+++++..
T Consensus 149 ~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~ 209 (244)
T cd04260 149 TTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQ 209 (244)
T ss_pred EEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHc
Confidence 999 6999999999999999999999999984 36899999999999998643
No 39
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.88 E-value=3.4e-22 Score=198.30 Aligned_cols=223 Identities=20% Similarity=0.277 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..++++|+.|+..|+++|||.+|.-.. -+..+|++.+.. ....++++..+ |. ..+.+..++ .|
T Consensus 30 l~~l~~~ia~L~~~G~eVilVSSGAiaa--G~~~Lg~~~rp~---~l~~kQA~AAV----GQ--~~Lm~~y~~-----~f 93 (369)
T COG0263 30 LEELVRQVAALHKAGHEVVLVSSGAIAA--GRTRLGLPKRPK---TLAEKQAAAAV----GQ--VRLMQLYEE-----LF 93 (369)
T ss_pred HHHHHHHHHHHHhCCCEEEEEccchhhh--ChhhcCCCCCCc---chHHHHHHHHh----CH--HHHHHHHHH-----HH
Confidence 5789999999999999999999995444 457788876542 12223333322 21 122222221 57
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeC-HHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd-~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
..+|+. ...+.++-.| |.. +. +..| .++|+.||+.|.|||+++++.....++.+.|+|.
T Consensus 94 ~~~g~~--v~QiLLTr~D--~~~--r~--------------ry~Nar~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~ 153 (369)
T COG0263 94 ARYGIK--VGQILLTRDD--FSD--RR--------------RYLNARNTLSALLELGVVPIINENDTVATEEIKFGDNDT 153 (369)
T ss_pred HhcCCe--eeEEEeehhh--hhh--HH--------------HHHHHHHHHHHHHHCCceeeecCCCceeeeeeeecCCch
Confidence 788876 3344455443 111 11 1122 7899999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCEEEEEecCccc-------CCCCccccccCH--HHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCC
Q 010815 166 VATACALAIEADKLICIIDGPIL-------DESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 236 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv-------~~~g~~I~~i~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
+++.+|...+||.|++|||+||+ +|+.++|++++. +|++.+.. +
T Consensus 154 LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~ag-g-------------------------- 206 (369)
T COG0263 154 LSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAG-G-------------------------- 206 (369)
T ss_pred HHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhc-C--------------------------
Confidence 99999999999999999999998 356788888763 24444421 0
Q ss_pred CCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 010815 237 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 316 (500)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (500)
-++.+++| | |.+||.||..|+++|++ +.|.+|+.
T Consensus 207 -----------------------sgs~~GTG-G---------------------M~TKl~AA~iA~~aG~~-~iI~~g~~ 240 (369)
T COG0263 207 -----------------------SGSELGTG-G---------------------MRTKLEAAKIATRAGVP-VIIASGSK 240 (369)
T ss_pred -----------------------CCCCCCcc-c---------------------HHHHHHHHHHHHHcCCc-EEEecCCC
Confidence 02223354 4 99999999999999998 88999999
Q ss_pred CceeeehhhhcCCCcceeecccc
Q 010815 317 GGVLLLELFKRDGMGTMVASDLY 339 (500)
Q Consensus 317 ~~~ll~~l~~~~~~GT~i~~d~~ 339 (500)
|+. +.++..++..||.|.+...
T Consensus 241 ~~~-i~~~~~~~~~GT~F~~~~~ 262 (369)
T COG0263 241 PDV-ILDALEGEAVGTLFEPQAK 262 (369)
T ss_pred cch-HHHHHhCCCCccEEecCCc
Confidence 985 4677778889999986553
No 40
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.88 E-value=5.1e-22 Score=197.02 Aligned_cols=220 Identities=19% Similarity=0.174 Sum_probs=149.5
Q ss_pred cHHHHHHHHHHHHHcCCeEEEE-ECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHH-HHHHhHHHHHHHHhhCCCCCc
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLV-PGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAA-MEAAGGIRMMIEAKLSPGPPI 83 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIV-HGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~-~~~~~~i~~~i~~~l~~~~~~ 83 (500)
.+.++++.|+.++..|+++||| ||++.+++.++.....+ .+....+.+ ..-+..++..+..
T Consensus 32 ~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~~~---------~~~~~~~a~aa~Gq~~l~~~~~~-------- 94 (266)
T PRK12314 32 RIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDKRP---------TSLAEKQALAAVGQPELMSLYSK-------- 94 (266)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccccCC---------CCHHHHHHHHHHhHHHHHHHHHH--------
Confidence 4678999999999999998885 99999988666433221 122233333 3333444444444
Q ss_pred hhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCccc---CCCCCeee
Q 010815 84 CNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY---SSSGEVLN 160 (500)
Q Consensus 84 ~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~---~~~g~~~~ 160 (500)
+|+++|++ ...+-++ +..|-. ..+.....+.|+.||+.|+|||+++++. +..+ ..+
T Consensus 95 -~~~~~g~~--~~q~llT--~~~~~~---------------~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~-~~~ 153 (266)
T PRK12314 95 -FFAEYGIV--VAQILLT--RDDFDS---------------PKSRANVKNTFESLLELGILPIVNENDAVATDEID-TKF 153 (266)
T ss_pred -HHHHcCCe--EEEEEEe--cccccc---------------hHHHHHHHHHHHHHHHCCCEEEEcCCCCeeecccc-cee
Confidence 67888886 1112111 112211 1122334789999999999999996433 2223 346
Q ss_pred cCHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCH--HHHHHHHHhhhhhhhHHHhhhhhhhcccccc
Q 010815 161 CNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL--QEADSLIRQRVKQSEIAANYVKAVAEEDITC 231 (500)
Q Consensus 161 i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (500)
.|+|.+|++||.+|+||+|+|+|||||++ |++++|+.|+. .+..++... .
T Consensus 154 ~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~-~-------------------- 212 (266)
T PRK12314 154 GDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGG-A-------------------- 212 (266)
T ss_pred cchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhcc-C--------------------
Confidence 78999999999999999999999999984 35788888863 232222110 0
Q ss_pred cCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEe
Q 010815 232 FGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHL 311 (500)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 311 (500)
++. +.+|| |.+|+++|..|.++|++ ++|
T Consensus 213 -----------------------------~~~-------------~~tGG---------M~~Kl~aa~~a~~~gv~-v~I 240 (266)
T PRK12314 213 -----------------------------GSK-------------FGTGG---------MVTKLKAAKFLMEAGIK-MVL 240 (266)
T ss_pred -----------------------------CCC-------------cccCc---------hHHHHHHHHHHHHCCCe-EEE
Confidence 011 22334 99999999999999998 999
Q ss_pred eccccCceeeehhhhcCCCcceeecc
Q 010815 312 LDGTIGGVLLLELFKRDGMGTMVASD 337 (500)
Q Consensus 312 ~~~~~~~~ll~~l~~~~~~GT~i~~d 337 (500)
+||+.|+.+ .+++.++..||.|.+.
T Consensus 241 ~~g~~~~~i-~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 241 ANGFNPSDI-LDFLEGESIGTLFAPK 265 (266)
T ss_pred EcCCCchHH-HHHHcCCCCceEEccC
Confidence 999999874 6777777889999763
No 41
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.87 E-value=2.2e-21 Score=191.39 Aligned_cols=218 Identities=16% Similarity=0.177 Sum_probs=146.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..+++.|+.|+. ++++||||||+-..++ .++++..+. ....++++ ..-+..++....+ .|
T Consensus 31 ~~~l~~~i~~l~~-~~~vilVssGava~g~--~~~~~~~~~-----~~~~qa~a--aiGq~~L~~~y~~---------~f 91 (264)
T PTZ00489 31 IEALCRFIADLQT-KYEVILVTSGAVAAGY--TKKEMDKSY-----VPNKQALA--SMGQPLLMHMYYT---------EL 91 (264)
T ss_pred HHHHHHHHHHHhc-CCeEEEEecChHhcCh--hhcCCCccc-----cHHHHHHH--HhCHHHHHHHHHH---------HH
Confidence 5678889998886 7999999988743332 244444211 01111111 2222335665655 56
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
.++|++ +..+.++..| +-. ++ . .....+.|+.||+.|+|||+++++..+..++.+.|+|.+
T Consensus 92 ~~~~~~--~aqiLlt~~d--~~~-~~-~-------------~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~l 152 (264)
T PTZ00489 92 QKHGIL--CAQMLLAAYD--LDS-RK-R-------------TINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRL 152 (264)
T ss_pred HhCCCe--EEEeeeeccc--ccc-ch-h-------------hHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHH
Confidence 788886 1222222222 111 00 0 012488999999999999999998887778999999999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC---C----CCcc---ccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCC
Q 010815 167 ATACALAIEADKLICIIDGPILD---E----SGHL---IRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 236 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~---I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
|+.||..++||+|+|+|||||++ | ++++ |++++.+++.... +.
T Consensus 153 Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~--~~------------------------- 205 (264)
T PTZ00489 153 SALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEA--TP------------------------- 205 (264)
T ss_pred HHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhc--Cc-------------------------
Confidence 99999999999999999999984 2 3444 6777766553221 00
Q ss_pred CCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 010815 237 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 316 (500)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (500)
.+ .+++|| |.+||.+|..|.+.|++ ++|++|+.
T Consensus 206 ------------------------~~-------------~~~tGG---------M~~Kl~aa~~a~~~Gi~-v~I~~g~~ 238 (264)
T PTZ00489 206 ------------------------NN-------------RFATGG---------IVTKLQAAQFLLERGGK-MYLSSGFH 238 (264)
T ss_pred ------------------------CC-------------CcccCC---------hHHHHHHHHHHHHCCCC-EEEEeCCC
Confidence 00 123344 99999999999999997 88999999
Q ss_pred CceeeehhhhcC--CCcceeecc
Q 010815 317 GGVLLLELFKRD--GMGTMVASD 337 (500)
Q Consensus 317 ~~~ll~~l~~~~--~~GT~i~~d 337 (500)
|+.+ ..++.++ ..||.|.+.
T Consensus 239 ~~~i-~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 239 LEKA-RDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred chHH-HHHHcCCCCCCceEEeec
Confidence 9865 5555433 379999764
No 42
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.87 E-value=1.8e-21 Score=200.94 Aligned_cols=223 Identities=17% Similarity=0.214 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++.|+.++..|+++|||||||... .+..++++.++. +++....+. ..-+..++..+.+ .|
T Consensus 24 i~~la~~I~~l~~~g~~vvlV~sG~~~~--g~~~lg~~~~~~---~l~~~qa~a--a~Gq~~l~~~~~~---------~l 87 (363)
T TIGR01027 24 IAELVEQVAALHAAGHEVVIVSSGAIAA--GFEALGLPERPK---TLAEKQALA--AVGQVRLMQLYEQ---------LF 87 (363)
T ss_pred HHHHHHHHHHHHHCCCeEEEEeCcHHhc--CccccCCCCCcc---chHHHHHHH--HhChHHHHHHHHH---------HH
Confidence 6789999999999999999999998432 344556554321 111222222 2223344455545 57
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeC-HHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVD-VTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd-~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
.++|++ +..+......|... ....| .++|+.||+.|+|||+++.+.....+..+.|+|.
T Consensus 88 ~~~Gi~----~aqillt~~d~~~~----------------~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~ 147 (363)
T TIGR01027 88 SQYGIK----VAQILLTRADFSDR----------------ERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDT 147 (363)
T ss_pred HHcCCe----EEEEEEeccchhhH----------------HHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHH
Confidence 788887 32221111111110 01123 3899999999999999975544334455679999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHH-HHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQE-ADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDS 237 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (500)
+|+.||.+|+||+|+|+|||||++ |++++|++++..+ ....+..+.
T Consensus 148 lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~-------------------------- 201 (363)
T TIGR01027 148 LSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDS-------------------------- 201 (363)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCC--------------------------
Confidence 999999999999999999999983 3468999997532 222221110
Q ss_pred CccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccC
Q 010815 238 IGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIG 317 (500)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 317 (500)
++ ++.+|| |.+||+||..|.+.|++ ++|+|++.|
T Consensus 202 -----------------------~~-------------~~gtGG---------M~~Kl~Aa~~a~~~gi~-v~I~~g~~~ 235 (363)
T TIGR01027 202 -----------------------GS-------------SVGTGG---------MRTKLQAADLATRAGVP-VIIASGSKP 235 (363)
T ss_pred -----------------------Cc-------------CcCcCC---------chHHHHHHHHHHHCCCe-EEEEeCCCc
Confidence 01 133444 99999999999999998 899999999
Q ss_pred ceeeehhhhcCCCcceeeccc
Q 010815 318 GVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 318 ~~ll~~l~~~~~~GT~i~~d~ 338 (500)
+. +..++.++..||.|.+..
T Consensus 236 ~~-l~~~l~g~~~GT~i~~~~ 255 (363)
T TIGR01027 236 EK-IADALEGAPVGTLFHAQA 255 (363)
T ss_pred cH-HHHHhcCCCCcEEEeeCC
Confidence 75 567777777899998743
No 43
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.85 E-value=3.1e-21 Score=171.49 Aligned_cols=144 Identities=38% Similarity=0.734 Sum_probs=136.1
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCc
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQG 420 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~G 420 (500)
.+|.|+..|++.|.+|+.++..++...+++.+.+...+..|++++.+|.++||+++.++.....+++.+++|+|+||++|
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gil~~rs~~~le~~i~dF~i~E~~g~viGC~aL~~~~~~~~gE~~~laV~pd~r~~G 81 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGILLRRSREQLEEEIDDFTIIERDGKVIGCAALHPVLEEDLGELRSLAVHPDYRGSG 81 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccccchhhHHHHHHHHhhheeeeeCCcEEEEEeecccCccCeeeEEEEEECHHhcCCC
Confidence 58999999999999999999999999999999999999999999999999999999987778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhhhccc-CCceEEEE
Q 010815 421 QGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRINLS-RNSKYYMK 484 (500)
Q Consensus 421 iG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~-~~s~~~~k 484 (500)
+|..|+.+++..|++.|++++++.++.+..||+++||+.++.+.+|...++.|++. +.+++.+.
T Consensus 82 ~G~~Ll~~~~~~Ar~~gi~~lf~LTt~~~~~F~~~GF~~vd~~~LP~~~~~~~~~~~~~~~~~~~ 146 (153)
T COG1246 82 RGERLLERLLADARELGIKELFVLTTRSPEFFAERGFTRVDKDELPEEVWSSYNFCERRSKCLAF 146 (153)
T ss_pred cHHHHHHHHHHHHHHcCCceeeeeecccHHHHHHcCCeECccccCCHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 66655443
No 44
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.83 E-value=1.4e-19 Score=175.75 Aligned_cols=161 Identities=19% Similarity=0.200 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHH-HHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAME-AAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~-~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.+ ..|+++||||||++.++..+.++. .+. ....+|..+... .
T Consensus 17 ~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~-------------------~~~s~Ge~~~~~l~~~--------~ 68 (227)
T cd04234 17 IKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------------LLLSFGERLSARLLAA--------A 68 (227)
T ss_pred HHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH-------------------HHHHHHHHHHHHHHHH--------H
Confidence 67899999998 889999999999988877765543 233 334456555443 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhC-CCcEEEcC-cccCCCCCeeec--
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDG-GCLVILSN-LGYSSSGEVLNC-- 161 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~-g~IPVi~~-~~~~~~g~~~~i-- 161 (500)
|+++|++ +..+++.+..+... ++++.+.+..++.+.|+.+++. |+|||+++ ++.+.+|+++++
T Consensus 69 l~~~Gi~----a~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~r 135 (227)
T cd04234 69 LRDRGIK----ARSLDARQAGITTD---------DNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGR 135 (227)
T ss_pred HHHCCCC----eEEeCHHHCCEEcC---------CccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeC
Confidence 7899988 77887776554443 2335666778899999999999 99999999 576778888888
Q ss_pred -CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHH
Q 010815 162 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 162 -~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~ 208 (500)
++|.+|+.+|.+|+||+|+|+|||||++ +++++|++++.+|++++..
T Consensus 136 g~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~ 190 (227)
T cd04234 136 GGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAY 190 (227)
T ss_pred CCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHh
Confidence 7999999999999999999999999984 2588999999999988864
No 45
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.82 E-value=8.6e-20 Score=203.69 Aligned_cols=232 Identities=16% Similarity=0.117 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHHHcCCeEEE-EECChHHHHHHHHHcCCCceeeC-CccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCch
Q 010815 7 WLVMVQDIAFLHHLGIRFVL-VPGTHVQIDKLLSERGHEAKYLG-RYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPIC 84 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VI-VHGgG~~i~~~~~~~g~~~~~~~-g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~ 84 (500)
+.+++++|+.|+..|+++|| +||++.+++..+...+....... -.+.++..... +++......|....+.
T Consensus 31 l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~~~q---a~aa~gq~~L~~~y~~----- 102 (715)
T TIGR01092 31 LGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPELDGK---ACAAVGQSGLMALYET----- 102 (715)
T ss_pred HHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchHHHH---HHHHHHHHHHHHHHHH-----
Confidence 67899999999999999988 89999999988866544311110 00112222222 2222222333332222
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCC-------C
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSG-------E 157 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g-------~ 157 (500)
.|..+++. +..+-++ +.+|-.. .......+.|+.||+.|+|||+++++..... .
T Consensus 103 ~f~~~~i~--~aQ~Llt--~~d~~~~---------------~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 103 MFTQLDIT--AAQILVT--DLDFRDE---------------QFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHcCCe--eEEEEec--hhhcccH---------------HHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 45666654 1111111 1111110 0112357899999999999999974443211 2
Q ss_pred eeecCHHHHHHHHHHHcCCCEEEEEecCcccC------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccc
Q 010815 158 VLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITC 231 (500)
Q Consensus 158 ~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (500)
-+++|+|.+|+.||.+|+||+|+|+|||||++ +++++|++++..+.+..+..+.
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~-------------------- 223 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGT-------------------- 223 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCc--------------------
Confidence 24899999999999999999999999999984 3588999998655442221110
Q ss_pred cCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEe
Q 010815 232 FGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHL 311 (500)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 311 (500)
.+ .+++|| |.+||++|..|.++|++ ++|
T Consensus 224 -----------------------------~~-------------~~~tGG---------M~~Kl~aa~~a~~~gi~-v~I 251 (715)
T TIGR01092 224 -----------------------------KS-------------RLGRGG---------MTAKVKAAVWAAYGGTP-VII 251 (715)
T ss_pred -----------------------------cc-------------ccCCCC---------chHHHHHHHHHHHCCCe-EEE
Confidence 00 123344 99999999999999998 999
Q ss_pred eccccCceeeehhhhcCCCcceeeccc
Q 010815 312 LDGTIGGVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 312 ~~~~~~~~ll~~l~~~~~~GT~i~~d~ 338 (500)
++|+.++. +..++.++..||.|.++.
T Consensus 252 ~~g~~~~~-l~~~l~g~~~GT~~~~~~ 277 (715)
T TIGR01092 252 ASGTAPKN-ITKVVEGKKVGTLFHEDA 277 (715)
T ss_pred eCCCCcch-HHHHhcCCCCceEecccc
Confidence 99999986 567777778899998753
No 46
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.82 E-value=4.8e-19 Score=174.95 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..++++|+.+.. +++++||||||++.+... ++++... .+...++.+.+++..+|..+++. .|
T Consensus 50 i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~-~~~~~~g-------~~~~~~~~~~~aa~~ln~lv~~~--------~l 112 (262)
T cd04255 50 VLPLVEEIVALRP-EHKLLILTGGGTRARHVY-SIGLDLG-------MPTGVLAKLGASVSEQNAEMLAT--------LL 112 (262)
T ss_pred HHHHHHHHHHHhC-CCcEEEEECCHHHHHHHH-HHHHHcC-------CCchHHHHHHHHHHHHHHHHHHH--------HH
Confidence 5688999998876 789999999999996433 2222111 12334555677788888877753 35
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCccc-------CCCCCee
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGY-------SSSGEVL 159 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~-------~~~g~~~ 159 (500)
..+|++ ++ ...+...|+.+|+.|+|||++++.. +..|...
T Consensus 113 ~~~g~~----~i-----------------------------~~~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~ 159 (262)
T cd04255 113 AKHGGS----KV-----------------------------GHGDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIP 159 (262)
T ss_pred HHcCCC----cc-----------------------------ccccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCC
Confidence 566765 21 1125667999999999999998732 1224467
Q ss_pred ecCHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHH
Q 010815 160 NCNTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSL 206 (500)
Q Consensus 160 ~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~ 206 (500)
+.|+|++|+.+|.+|+||+|+++|||||++ +++++|++++.+++.++
T Consensus 160 ~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~ 213 (262)
T cd04255 160 PHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKK 213 (262)
T ss_pred CCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHH
Confidence 999999999999999999999999999984 36899999998776555
No 47
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.81 E-value=1e-18 Score=170.22 Aligned_cols=199 Identities=18% Similarity=0.134 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHH-cCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSE-RGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~-~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.++..|+++|||||||++++.+... .++ +..+++....+...+|..+... .
T Consensus 25 i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~ll~~--------~ 85 (231)
T PRK00358 25 LDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGM-----------DRATADYMGMLATVMNALALQD--------A 85 (231)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCC-----------ChhhHHHHHHHHHHHHHHHHHH--------H
Confidence 5688999999999999999999999998776432 222 2234566655667788854443 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+.+|++ +..++...- ++.+. ....+.+..+|++|+|||+++-. +. .+.++|.
T Consensus 86 l~~~Gi~----a~~~~~~~~----------------~~~~~--~~~~~~~~~~l~~g~vPVv~g~~----~~-~~~ssD~ 138 (231)
T PRK00358 86 LERAGVD----TRVQSAIPM----------------PQVAE--PYIRRRAIRHLEKGRVVIFAAGT----GN-PFFTTDT 138 (231)
T ss_pred HHHcCCC----eEEechhhc----------------ccccC--cccHHHHHHHHHCCCEEEEECCC----CC-CCCCchH
Confidence 7888887 321111110 11111 12456788999999999997522 22 2468999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|+.||.+|+||+++|+|||||++ |++++|++|+.+|+.+. +.
T Consensus 139 ~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~--------------------------- 188 (231)
T PRK00358 139 AAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GL--------------------------- 188 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CC---------------------------
Confidence 999999999999999999999983 36899999987764332 11
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
...++.++..|.++|++ ++|+|+..|+
T Consensus 189 ----------------------------------------------------~~~d~~a~~~a~~~~i~-v~I~~g~~~~ 215 (231)
T PRK00358 189 ----------------------------------------------------KVMDATAISLARDNKIP-IIVFNMNKPG 215 (231)
T ss_pred ----------------------------------------------------cchhHHHHHHHHHcCCc-EEEECCCCch
Confidence 22367777778889997 8999999998
Q ss_pred eeeehhhhcCCCcceee
Q 010815 319 VLLLELFKRDGMGTMVA 335 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i~ 335 (500)
.+ ..++.++..||.|.
T Consensus 216 ~l-~~~l~g~~~GT~i~ 231 (231)
T PRK00358 216 NL-KRVVKGEHIGTLVS 231 (231)
T ss_pred HH-HHHHCCCCCCEEeC
Confidence 75 56667777899873
No 48
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.81 E-value=8.1e-19 Score=170.74 Aligned_cols=199 Identities=17% Similarity=0.136 Sum_probs=145.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHH-HHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQ-IDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~-i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+..+++.|+.+...|+++|||||||++ .|....++++.. ..++....+...+|..+.+. .
T Consensus 23 i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~l~~~--------~ 83 (229)
T cd04239 23 LKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPR-----------ATADYIGMLATVMNALALQD--------A 83 (229)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCCh-----------hhHHHHHHHHHHHHHHHHHH--------H
Confidence 567888888888889999999999985 565544544331 22344444445677777653 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|.++|++ +..+++.+-... ....+.+.|..+++.|+|||+++.. |. .+.++|.
T Consensus 84 l~~~Gi~----a~~~~~~~~~~~------------------~~~~~~~~l~~~l~~g~ipVi~g~~----g~-~~~~sD~ 136 (229)
T cd04239 84 LEKLGVK----TRVMSAIPMQGV------------------AEPYIRRRAIRHLEKGRIVIFGGGT----GN-PGFTTDT 136 (229)
T ss_pred HHHcCCC----EEEeCHHHHhhh------------------hccccHHHHHHHHhCCCEEEEeCcc----CC-CCCCcHH
Confidence 7888987 555554432110 1234788999999999999999775 22 2458999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC---C----CCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|+.||.+|+||+|+|+|||||++ | ++++|++|+.+|+.++..
T Consensus 137 ~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~------------------------------ 186 (229)
T cd04239 137 AAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL------------------------------ 186 (229)
T ss_pred HHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc------------------------------
Confidence 999999999999999999999984 2 589999999877766531
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
+..++.++..+.+.|++ ++|+|++.|+
T Consensus 187 ----------------------------------------------------~~~~~~a~~~~~~~~i~-v~I~~g~~~~ 213 (229)
T cd04239 187 ----------------------------------------------------KVMDATALTLCRRNKIP-IIVFNGLKPG 213 (229)
T ss_pred ----------------------------------------------------CCccHHHHHHHHHCCCe-EEEECCCChh
Confidence 22335566667888886 8999999998
Q ss_pred eeeehhhhcCCCcceee
Q 010815 319 VLLLELFKRDGMGTMVA 335 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i~ 335 (500)
.+ .+++.++..||.|.
T Consensus 214 ~l-~~~l~g~~~GT~i~ 229 (229)
T cd04239 214 NL-LRALKGEHVGTLIE 229 (229)
T ss_pred HH-HHHHcCCCCCeEeC
Confidence 74 67777777899874
No 49
>PRK08210 aspartate kinase I; Reviewed
Probab=99.81 E-value=8.9e-19 Score=184.31 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEE-----CChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHH--HHHhhCC
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVP-----GTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMM--IEAKLSP 79 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVH-----GgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~--i~~~l~~ 79 (500)
..+++++|+.+...|+++|||| ||||+++..+..+..... +.+++..++.+ .++|+++.. +.+
T Consensus 19 ~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~-----~~~~~~~~~~l-~~~Ge~~s~~~~~~---- 88 (403)
T PRK08210 19 RKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEF-----SEISKREQDLL-MSCGEIISSVVFSN---- 88 (403)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhc-----cCCChHHHHHH-HhHhHHHHHHHHHH----
Confidence 4688999999999999999888 677778777765544322 23455666554 677777765 444
Q ss_pred CCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCe
Q 010815 80 GPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEV 158 (500)
Q Consensus 80 ~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~ 158 (500)
.|+++|++ +..+++.+..+++.++.+ .|++..++.+.|+.+++.|+|||+++. +.+.+|+.
T Consensus 89 -----~l~~~Gi~----a~~l~~~~~~~~t~~~~~---------~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~ 150 (403)
T PRK08210 89 -----MLNENGIK----AVALTGGQAGIITDDNFT---------NAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDI 150 (403)
T ss_pred -----HHHhCCCC----eEEechHHccEEccCCCC---------ceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCE
Confidence 57899998 899999887777754321 367788899999999999999999997 67888999
Q ss_pred eec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHh
Q 010815 159 LNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 209 (500)
Q Consensus 159 ~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~ 209 (500)
+++ ++|.+|+.||.+|+|++++|+|||||++ +++++|++++.+|++++...
T Consensus 151 ~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~ 211 (403)
T PRK08210 151 TTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQ 211 (403)
T ss_pred EEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHC
Confidence 888 6999999999999999999999999984 36899999999999998643
No 50
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.80 E-value=7.8e-20 Score=170.86 Aligned_cols=235 Identities=20% Similarity=0.180 Sum_probs=154.8
Q ss_pred ccccHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHH--HHHHH--HHHHhHHHHHHHHhhC
Q 010815 3 FFIPWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSE--SLAAA--MEAAGGIRMMIEAKLS 78 (500)
Q Consensus 3 ~~~~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~--~l~~~--~~~~~~i~~~i~~~l~ 78 (500)
+.+-+..|++.++.|+..|++++||.+|+-..+..-.++.+-+ ....|-|... ++... .++.|. ..+.+...
T Consensus 30 aLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~--s~s~r~~l~~~~~l~e~rA~AAvGQ--~~Lmalye 105 (285)
T KOG1154|consen 30 ALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLP--SSSMRQTLKPQSELAEKRACAAVGQ--SGLMALYE 105 (285)
T ss_pred hHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhcc--chhHHHhhCCccchhhHHHHHHhCc--chHHHHHH
Confidence 4456789999999999999999999999877765443333332 1122333222 12221 111111 22222211
Q ss_pred CCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCe
Q 010815 79 PGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEV 158 (500)
Q Consensus 79 ~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~ 158 (500)
. .|.++|+. .+.+.++-.| |..-++ +.--..+|++||.-|+|||++.++..+..++
T Consensus 106 ~-----lF~Qy~~~--iAQvLvT~~D--i~d~~~---------------r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~ 161 (285)
T KOG1154|consen 106 T-----LFTQYGIT--IAQVLVTRND--ILDEQQ---------------RKNLQNTISELLSMNVIPIVNENDAVSPREI 161 (285)
T ss_pred H-----HHHHhccc--hheeeecCcc--hhhHHH---------------HHHHHHHHHHHHhCCceeeecCCCccCCccc
Confidence 1 46778876 3334443322 322111 1112679999999999999999877665566
Q ss_pred eecC---HHHHHHHHHHHcCCCEEEEEecCcccCC---C---CccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccc
Q 010815 159 LNCN---TYEVATACALAIEADKLICIIDGPILDE---S---GHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDI 229 (500)
Q Consensus 159 ~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv~~---~---g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
.+-| +|.+|+.+|.+++||.|++||||+|++. + .++|+..++.+-
T Consensus 162 ~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~~-------------------------- 215 (285)
T KOG1154|consen 162 PFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDADPSKLIHTFSPGDP-------------------------- 215 (285)
T ss_pred ccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCCCcceeeeeeccCCC--------------------------
Confidence 6666 9999999999999999999999999852 2 344444433211
Q ss_pred cccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeE
Q 010815 230 TCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRV 309 (500)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 309 (500)
+ ..-+|+.++.+++| | |.+||.||..|..+||. +
T Consensus 216 -----~------------------v~~tfG~~SkvGtG-G---------------------M~tKv~AA~~A~~~Gv~-v 249 (285)
T KOG1154|consen 216 -----Q------------------VSTTFGSKSKVGTG-G---------------------METKVKAAVNALNAGVS-V 249 (285)
T ss_pred -----C------------------CccccCccCccCcC-c---------------------chhhHHHHHHHhcCCce-E
Confidence 0 00133445556665 4 99999999999999998 7
Q ss_pred EeeccccCceeeehhhhcCCCcceeeccc
Q 010815 310 HLLDGTIGGVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 310 ~~~~~~~~~~ll~~l~~~~~~GT~i~~d~ 338 (500)
.|.+|..|.+ +..++.+...||.|....
T Consensus 250 iI~~g~~p~~-I~~iv~g~kvgt~f~~~~ 277 (285)
T KOG1154|consen 250 IITNGDAPEN-ITDIVEGKKVGTFFEQLK 277 (285)
T ss_pred EEeCCCChHH-HHHHHhhhhhhhhhhhcc
Confidence 8999999997 477888777899986543
No 51
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.79 E-value=2.8e-18 Score=180.48 Aligned_cols=177 Identities=17% Similarity=0.171 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHH-HHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGI-RMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i-~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.++..|.++|+||||++.++..+.+++...- . .+.|+.....+++. ...+ +..+.+ .
T Consensus 18 i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~-~--~~~~~~~~~~i~~~-Ge~~s~~~~~~---------~ 84 (401)
T TIGR00656 18 IKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAI-R--DAITPRERDELVSH-GERLSSALFSG---------A 84 (401)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHh-c--cCCChHHHHHHhhH-HHHHHHHHHHH---------H
Confidence 5789999999999999999999999999888766553100 0 13455444333333 3334 344444 6
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCH-HHHHHHHhCCCcEEEcC-cccCCCCCeeec--
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDV-TRMRERLDGGCLVILSN-LGYSSSGEVLNC-- 161 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~-~~I~~lL~~g~IPVi~~-~~~~~~g~~~~i-- 161 (500)
|+++|++ +..+++.+..+++..+. + .+++..++. +.|+.+++.|.|||+++ .+.+.+|..+++
T Consensus 85 l~~~g~~----a~~l~~~~~~~~t~~~~--------~-~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgr 151 (401)
T TIGR00656 85 LRDLGVK----AIWLDGGEAGIITDDNF--------G-NAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGR 151 (401)
T ss_pred HHhCCCc----eEEeccccceEEeCCCC--------C-ceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCC
Confidence 8899998 89999888877775432 1 256777888 99999999999999999 577778888887
Q ss_pred -CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHh
Q 010815 162 -NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQ 209 (500)
Q Consensus 162 -~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~ 209 (500)
++|.+|+.+|.+|+|++++++|||||++ |++++|++++.+|+.++...
T Consensus 152 g~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~ 207 (401)
T TIGR00656 152 GGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATF 207 (401)
T ss_pred CcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHc
Confidence 6999999999999999999999999984 36789999999999999743
No 52
>PRK06635 aspartate kinase; Reviewed
Probab=99.79 E-value=5.7e-18 Score=178.32 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECC-hHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGT-HVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGg-G~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.+...|.++|+|||| |+..+.+++....... .+++..++.+......+|..+... .
T Consensus 19 ~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~Ge~~~~~~~~~--------~ 84 (404)
T PRK06635 19 IKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSP------LPDPRELDMLLSTGEQVSVALLAM--------A 84 (404)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhcc------CCCHHHHHHHhhhhHHHHHHHHHH--------H
Confidence 678999999999999999888886 6777776665432111 125566665543333566654443 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcC-cccCCCCCeeec---
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC--- 161 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~-~~~~~~g~~~~i--- 161 (500)
|+++|++ +..+++.+..+++... ++ .+++..++.+.|+.+++.|.|||+++ ++.+.+|+++++
T Consensus 85 l~~~g~~----a~~l~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg 151 (404)
T PRK06635 85 LQSLGVK----ARSFTGWQAGIITDSA--------HG-KARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRG 151 (404)
T ss_pred HHhCCCC----eEEeChhhCCEEecCC--------CC-ceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCC
Confidence 7899998 8888888877666532 21 36788899999999999999999999 577888999999
Q ss_pred CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHH
Q 010815 162 NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 162 ~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~ 208 (500)
++|.+|+.+|.+|+||+++++|||||++ +++++|++++.+|++++..
T Consensus 152 ~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~ 205 (404)
T PRK06635 152 GSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELAS 205 (404)
T ss_pred ChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHH
Confidence 9999999999999999999999999984 3688999999999988853
No 53
>PRK08841 aspartate kinase; Validated
Probab=99.78 E-value=2e-17 Score=172.51 Aligned_cols=177 Identities=16% Similarity=0.250 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
-+.+++++|+.+...|.++|+||||++..+..+..+..... +.+++.+++.+......++..+.+. .
T Consensus 18 ~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~-----~~~~~~~~d~l~s~GE~~s~~lla~--------~ 84 (392)
T PRK08841 18 RIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVD-----SVPTARELDVLLSAGEQVSMALLAM--------T 84 (392)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhc-----cCCCHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 35789999999999999999999999855555444433321 4567778887766655666666554 6
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCeeec---
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNC--- 161 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i--- 161 (500)
|++.|++ +..+++.+..+++.... ..+.+..++.+.|+.+++.|.|||+++. +.+.+|++.++
T Consensus 85 L~~~Gi~----a~~l~~~~~~i~t~~~~---------~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrg 151 (392)
T PRK08841 85 LNKLGYA----ARSLTGAQANIVTDNQH---------NDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRG 151 (392)
T ss_pred HHhCCCC----eEEEehhHcCEEecCCC---------CCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCC
Confidence 8899998 88888888766664321 1367777889999999999999999985 67888999888
Q ss_pred CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHHHHH
Q 010815 162 NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 162 ~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~~~~ 208 (500)
++|..|+.+|.+|+||.++++|||||+ | |++++|++++.+|+.++..
T Consensus 152 gsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~ 205 (392)
T PRK08841 152 GSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMAR 205 (392)
T ss_pred ChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHh
Confidence 999999999999999999999999998 3 3589999999999888863
No 54
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.78 E-value=5e-18 Score=165.39 Aligned_cols=199 Identities=19% Similarity=0.161 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHH-HHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i-~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++++|+.+...|.++|||||||+++ +....+++.. +.+ .+.+..+...+|..+... +
T Consensus 25 i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~-------~~~----~d~~g~~~~~~n~~ll~~--------~ 85 (231)
T cd04254 25 LNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMD-------RAT----ADYMGMLATVINALALQD--------A 85 (231)
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCC-------chh----hhHHHHHHHHHHHHHHHH--------H
Confidence 5688999998888899999999999874 2223333322 222 233323455667644332 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|++ +..+++.+-+. + ...++.+.++.+|+.|+|||++.- .|. ..+++|.
T Consensus 86 L~~~Gv~----a~~l~~~~~~~----------------~--~~~~~~~~l~~~l~~g~ipV~~g~----~G~-~~~~~D~ 138 (231)
T cd04254 86 LESLGVK----TRVMSAIPMQG----------------V--AEPYIRRRAIRHLEKGRVVIFAGG----TGN-PFFTTDT 138 (231)
T ss_pred HHHcCCC----eEEEcHHHhhh----------------h--hcccCHHHHHHHHHCCCEEEEECC----cCC-CCCCcHH
Confidence 7889987 66666554211 1 124678999999999999999832 232 3569999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|+.||.+|+||+++|+|||||++ |++++|++++.+|+.+. +.
T Consensus 139 ~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~---~~--------------------------- 188 (231)
T cd04254 139 AAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GL--------------------------- 188 (231)
T ss_pred HHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhc---ch---------------------------
Confidence 999999999999999999999983 25789999998776332 11
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
..-++.++..|.++|++ ++|+|+..|+
T Consensus 189 ----------------------------------------------------~~~d~~a~~~a~~~gi~-~~I~~g~~~~ 215 (231)
T cd04254 189 ----------------------------------------------------KVMDATAFTLCRDNNLP-IVVFNINEPG 215 (231)
T ss_pred ----------------------------------------------------hhhHHHHHHHHHHCCCe-EEEEeCCCcc
Confidence 11245667777778987 8999999999
Q ss_pred eeeehhhhcCCCcceee
Q 010815 319 VLLLELFKRDGMGTMVA 335 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i~ 335 (500)
+| ..++.++..||.|.
T Consensus 216 ~l-~~~l~g~~~GT~i~ 231 (231)
T cd04254 216 NL-LKAVKGEGVGTLIS 231 (231)
T ss_pred HH-HHHHCCCCCCEEeC
Confidence 75 45556667899984
No 55
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.76 E-value=1.3e-17 Score=186.13 Aligned_cols=231 Identities=16% Similarity=0.161 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCc-eeeCCccCCCHHHHH--HH-HHHHhHHHHHHHHhhCCCC
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEA-KYLGRYRITDSESLA--AA-MEAAGGIRMMIEAKLSPGP 81 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~-~~~~g~r~t~~~~l~--~~-~~~~~~i~~~i~~~l~~~~ 81 (500)
-+.++++.|+.|+..|+++|||.+|-...+..+..+.-.. +...-+. .+...++ .+ ..-+..+......
T Consensus 38 ~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~-~~~~~~~~qa~aa~Gq~~l~~~~~~------ 110 (718)
T PLN02418 38 RLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQ-KPQMELDGKACAAVGQSELMALYDT------ 110 (718)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCC-CCcchHHHHHHHHhhHHHHHHHHHH------
Confidence 4678999999999999999999888555544333221100 0000000 0111122 11 2222223333333
Q ss_pred CchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCC--C---
Q 010815 82 PICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSS--G--- 156 (500)
Q Consensus 82 ~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~--g--- 156 (500)
.|+++|++ +..+-..+..|-..+ ......+.|+.||+.|+|||+++++.... +
T Consensus 111 ---~f~~~g~~----~~qillT~~~~~~~~---------------~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~ 168 (718)
T PLN02418 111 ---LFSQLDVT----ASQLLVTDSDFRDPD---------------FRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYE 168 (718)
T ss_pred ---HHHHcCCe----EEEEEecHhHhcchh---------------HhHhHHHHHHHHHHCCCEEEEcCCCCccccccccc
Confidence 57888875 222222222222211 12345789999999999999998644322 1
Q ss_pred --CeeecCHHHHHHHHHHHcCCCEEEEEecCcccC------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhccc
Q 010815 157 --EVLNCNTYEVATACALAIEADKLICIIDGPILD------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEED 228 (500)
Q Consensus 157 --~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (500)
...++|+|.+|+.||.+++||+|+|+|||||++ +++++|++++..+.+..+..+.
T Consensus 169 ~~~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~----------------- 231 (718)
T PLN02418 169 DSSGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGE----------------- 231 (718)
T ss_pred cccCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhccc-----------------
Confidence 236889999999999999999999999999984 3478889887655443332111
Q ss_pred ccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCe
Q 010815 229 ITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQR 308 (500)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 308 (500)
.+. +.+|| |.+||++|..|.++|++
T Consensus 232 --------------------------------~s~-------------~~tGG---------M~~Kl~Aa~~a~~~Gi~- 256 (718)
T PLN02418 232 --------------------------------KSR-------------VGRGG---------MTAKVKAAVNAASAGIP- 256 (718)
T ss_pred --------------------------------ccc-------------cCCCC---------cHHHHHHHHHHHHCCCc-
Confidence 001 22334 99999999999999997
Q ss_pred EEeeccccCceeeehhhhcCCCcceeeccc
Q 010815 309 VHLLDGTIGGVLLLELFKRDGMGTMVASDL 338 (500)
Q Consensus 309 ~~~~~~~~~~~ll~~l~~~~~~GT~i~~d~ 338 (500)
++|+||+.|+. +.+++.++..||.|.++.
T Consensus 257 v~I~~g~~~~~-l~~~l~g~~~GT~i~~~~ 285 (718)
T PLN02418 257 VVITSGYALDN-IRKVLRGERVGTLFHQDA 285 (718)
T ss_pred EEEeCCCCcch-HHHHhcCCCCceEecccc
Confidence 89999999986 467777788899998764
No 56
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.76 E-value=3.7e-17 Score=159.32 Aligned_cols=199 Identities=19% Similarity=0.183 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHH-HHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI-EAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i-~~~l~~~~~~~~ 85 (500)
+.+++++|+.++..|+++|||||+|++..- ... . .. +....+.+......+|..+ .. .
T Consensus 25 i~~la~~i~~~~~~g~~viiV~GgGs~~~g--~~~--~-------~~-~~~~~d~ig~~~~~ln~~~~~~---------~ 83 (231)
T PRK14558 25 VNYLVNEIKSVVEYGFKIGIVIGAGNLFRG--VEL--K-------EL-SPTRADQIGMLGTVINALYLKD---------I 83 (231)
T ss_pred HHHHHHHHHHHHHCCCeEEEEECccHHHHH--Hhc--c-------CC-ChHHHHHHHHHHHHHHHHHHHH---------H
Confidence 568999999999999999999999997441 111 1 01 2223333323334466543 44 5
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|+++|++ ++.+... ... +.+...+.+.|..+|+.|+|||+++... ..++++|.
T Consensus 84 l~~~gi~----a~~~~~~----~~~--------------~~~~~~~~~~i~~ll~~g~vpV~~G~~~-----~~~~~~D~ 136 (231)
T PRK14558 84 FEKSGLK----AVIVSQI----VNL--------------PSVEPINYDDIELYFRAGYIVIFAGGTS-----NPFFTTDT 136 (231)
T ss_pred HHHcCCC----eEEeccc----ccc--------------chhhhhhHHHHHHHHHCCCEEEEECCCC-----CCCCCcHH
Confidence 7889987 4444421 110 0122345899999999999999997631 23568999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|+.+|..|+||.++++|||||++ |++++|++|+.+|+.++ +..
T Consensus 137 ~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~-------------------------- 187 (231)
T PRK14558 137 AAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLK-------------------------- 187 (231)
T ss_pred HHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---Ccc--------------------------
Confidence 999999999999999999999983 35899999987665443 110
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
. | +..++..|.++|++ ++|+|+..|+
T Consensus 188 ------------------------------~---------------------~--d~~a~~~a~~~gi~-v~I~ng~~~~ 213 (231)
T PRK14558 188 ------------------------------V---------------------M--DTEAFSICKKYGIT-ILVINFFEPG 213 (231)
T ss_pred ------------------------------c---------------------c--cHHHHHHHHHCCCC-EEEEeCCCCC
Confidence 0 2 24556667788998 8999999998
Q ss_pred eeeehhhhcCCCcceeecc
Q 010815 319 VLLLELFKRDGMGTMVASD 337 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i~~d 337 (500)
++ ..++.++..||.|.++
T Consensus 214 ~l-~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 214 NL-LKALKGENVGTLVVPD 231 (231)
T ss_pred HH-HHHHCCCCCcEEeCCC
Confidence 75 4556667789999763
No 57
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.75 E-value=5.4e-17 Score=157.11 Aligned_cols=194 Identities=16% Similarity=0.110 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcC-CCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERG-HEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g-~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.++++.|+.+.. |.++|||||||++.+.+.+... +. . +....+..-....++|..+++.+
T Consensus 20 i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~--------~-~~~~~d~~g~~~~~ln~~~~~~~-------- 81 (221)
T cd04253 20 IKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLG--------A-SEAFLDEIGIMATRLNARLLIAA-------- 81 (221)
T ss_pred HHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcC--------C-CHHHHHHhcCHHHHHHHHHHHHH--------
Confidence 5577888887765 7899999999999887654321 11 0 11233444333458888887742
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
..+|++ ++.+ +.+.+..+|+.|.|||+++.. + ++++|.
T Consensus 82 -l~~~~~----~~~~------------------------------~~~~~~~~l~~g~vpv~~G~~--~-----~~s~D~ 119 (221)
T cd04253 82 -LGDAYP----PVPT------------------------------SYEEALEAMFTGKIVVMGGTE--P-----GQSTDA 119 (221)
T ss_pred -HhcCCC----cCCC------------------------------CHHHHHHHHHcCCeEEEECCC--C-----CCccHH
Confidence 334543 2221 356788999999999998753 1 368999
Q ss_pred HHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCC
Q 010815 166 VATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSI 238 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (500)
+|+.+|.+|+||+|+++|||+|++ +++++|++|+.+|+.++.....
T Consensus 120 ~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~--------------------------- 172 (221)
T cd04253 120 VAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSS--------------------------- 172 (221)
T ss_pred HHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCC---------------------------
Confidence 999999999999999999999983 2489999999888877742210
Q ss_pred ccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCc
Q 010815 239 GSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGG 318 (500)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 318 (500)
+..|++ |..++.++..+.+.|++ ++|+||+.|+
T Consensus 173 -------------------------~~~g~~---------------------~~~d~~a~~~~~~~gi~-~~I~~g~~p~ 205 (221)
T cd04253 173 -------------------------WKAGSN---------------------EPFDPLAAKIIERSGIK-TIVVDGRDPE 205 (221)
T ss_pred -------------------------cCCCCC---------------------cchHHHHHHHHHHCCCe-EEEECCCCcc
Confidence 111211 56788888888999997 8999999998
Q ss_pred eeeehhhhcCCCcceee
Q 010815 319 VLLLELFKRDGMGTMVA 335 (500)
Q Consensus 319 ~ll~~l~~~~~~GT~i~ 335 (500)
. +.+++.++..||.|.
T Consensus 206 ~-l~~~l~g~~~GT~I~ 221 (221)
T cd04253 206 N-LERALKGEFVGTIIE 221 (221)
T ss_pred H-HHHHHCCCCCCeEeC
Confidence 6 466677778899873
No 58
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.75 E-value=6.6e-17 Score=156.53 Aligned_cols=196 Identities=16% Similarity=0.122 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+.++++.|+.++.. +++|||||||++...+... ... .. .+...++..-....++|..+.+.| |
T Consensus 19 i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~-~~~--~~-----~~~~~~~~~g~~~~~ln~~~l~~l--------l 81 (221)
T TIGR02076 19 IKEFANILRKLSDE-HKVGVVVGGGKTARRYIGV-ARE--LG-----ASETFLDEIGIDATRLNAMLLIAA--------L 81 (221)
T ss_pred HHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHH-HHH--cC-----CCHHHHHHhhhHHHHHHHHHHHHH--------H
Confidence 56788889988776 8999999999987554321 100 00 122344555445578888877742 4
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
...+++ ++.. +......+++.|.|||+++.. + .+++|++
T Consensus 82 ~~~~~~----~~~~------------------------------~~~~~~~~l~~g~ipv~~G~~--~-----~~s~D~~ 120 (221)
T TIGR02076 82 GDDAYP----KVPE------------------------------NFEEALEAMSLGKIVVMGGTH--P-----GHTTDAV 120 (221)
T ss_pred HhcCCC----CcCC------------------------------CHHHHHHHHHcCCEEEEcCCC--C-----CCCcHHH
Confidence 444554 2111 233456788889999998753 1 4799999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCc
Q 010815 167 ATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIG 239 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (500)
|+.+|.+|+||+|+|+|||||++ |++++|++++.+|+.++..++.
T Consensus 121 A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~---------------------------- 172 (221)
T TIGR02076 121 AALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSS---------------------------- 172 (221)
T ss_pred HHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCC----------------------------
Confidence 99999999999999999999984 3579999999888877753210
Q ss_pred cccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCce
Q 010815 240 SVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGV 319 (500)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 319 (500)
+++|++ |..|+.++..+.+.|++ ++|++++.|+.
T Consensus 173 ------------------------~~~g~~---------------------~~~~~~a~~~~~~~~i~-v~I~~g~~~~~ 206 (221)
T TIGR02076 173 ------------------------VKAGSN---------------------EVVDPLAAKIIERSKIR-TIVVNGRDPEN 206 (221)
T ss_pred ------------------------ccCCCC---------------------ceeHHHHHHHHHHCCCc-EEEECCCCccH
Confidence 112212 67788888888888886 89999999987
Q ss_pred eeehhhhcCCCcceee
Q 010815 320 LLLELFKRDGMGTMVA 335 (500)
Q Consensus 320 ll~~l~~~~~~GT~i~ 335 (500)
++ .++.++..||.|.
T Consensus 207 l~-~~l~g~~~GT~i~ 221 (221)
T TIGR02076 207 LE-KVLKGEHVGTIIE 221 (221)
T ss_pred HH-HHHCCCCCCeEeC
Confidence 65 5666777899873
No 59
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.75 E-value=6e-17 Score=158.01 Aligned_cols=198 Identities=19% Similarity=0.133 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHH-HHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHH-HHhhCCCCCch
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQI-DKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMI-EAKLSPGPPIC 84 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i-~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i-~~~l~~~~~~~ 84 (500)
+.++++.|+.+...|+++|||||+|++. +...++++..... .+........+|..+ .+
T Consensus 26 i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~-----------~d~~g~~~~~l~~~l~~~--------- 85 (233)
T TIGR02075 26 LNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVT-----------ADYMGMLATVINGLALRD--------- 85 (233)
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCcc-----------HHHHHHHHHHHHHHHHHH---------
Confidence 5678999998888889999999999863 3235666644211 233322233455554 44
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHH
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTY 164 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D 164 (500)
+|..+|++ +..+++.+-. .. ......+.++.+|++|+|||++.. .| ..++++|
T Consensus 86 ~L~~~Gi~----a~~l~~~~~~-~~-----------------~~~~~~~~i~~ll~~g~VpV~~g~----~g-~~~~s~D 138 (233)
T TIGR02075 86 ALEKLGVK----TRVLSAISMP-QI-----------------CESYIRRKAIKHLEKGKVVIFSGG----TG-NPFFTTD 138 (233)
T ss_pred HHHhCCCC----cEEeccccCC-CC-----------------ccccCHHHHHHHHHCCCEEEEECC----CC-CCCCCch
Confidence 57889988 6666654421 00 012347899999999999998743 12 2468999
Q ss_pred HHHHHHHHHcCCCEEEEEec-CcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCC
Q 010815 165 EVATACALAIEADKLICIID-GPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSD 236 (500)
Q Consensus 165 ~~a~~lA~~l~Ad~li~lTd-v~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
.+|+.||..|+||.|+|+|| |||++ |++++|++++.+|+.+. +.
T Consensus 139 ~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~------------------------- 190 (233)
T TIGR02075 139 TAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NL------------------------- 190 (233)
T ss_pred HHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CH-------------------------
Confidence 99999999999999999999 99983 35789999997775432 11
Q ss_pred CCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeecccc
Q 010815 237 SIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTI 316 (500)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 316 (500)
-.-++.++..|.++|++ ++|+|+..
T Consensus 191 ------------------------------------------------------~~~d~~~~~~a~~~~i~-v~i~~g~~ 215 (233)
T TIGR02075 191 ------------------------------------------------------KVMDLTAFALARDNNLP-IVVFNIDE 215 (233)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHHCCCe-EEEEeCCC
Confidence 01235566777788987 89999999
Q ss_pred CceeeehhhhcCCCcceee
Q 010815 317 GGVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 317 ~~~ll~~l~~~~~~GT~i~ 335 (500)
|++| ..++.++..||.|.
T Consensus 216 ~~~l-~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 216 PGAL-KKVILGKGIGTLVS 233 (233)
T ss_pred cchH-HHHHCCCCCCEEeC
Confidence 9875 45556677899873
No 60
>PRK07431 aspartate kinase; Provisional
Probab=99.74 E-value=8.6e-17 Score=176.98 Aligned_cols=173 Identities=18% Similarity=0.222 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHH---HHHHHHHhHHHHHHHHhhCCCCCc
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESL---AAAMEAAGGIRMMIEAKLSPGPPI 83 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l---~~~~~~~~~i~~~i~~~l~~~~~~ 83 (500)
+.+++++|+.+...|.++|||||++..+...+.+++. ++|+..+. +.+......++..+++.
T Consensus 19 i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~--------~~t~~~~~~~~~~~ls~Ge~~s~~l~~~------- 83 (587)
T PRK07431 19 IQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAK--------EISSNPPRREMDMLLSTGEQVSIALLSM------- 83 (587)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHH--------HhccCCCHHHHHHHHHHhHHHHHHHHHH-------
Confidence 6789999999999999999999975444444434432 12333333 33333334667777654
Q ss_pred hhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-cc--CCCCCeee
Q 010815 84 CNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GY--SSSGEVLN 160 (500)
Q Consensus 84 ~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~--~~~g~~~~ 160 (500)
.|+++|++ ++++++.+.++++... ++ .+++..++.+.|+.+++.|+|||+++. +. +..|++.+
T Consensus 84 -~l~~~gi~----a~~l~~~~~~~~~~~~--------~~-~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~ 149 (587)
T PRK07431 84 -ALHELGQP----AISLTGAQVGIVTESE--------HG-RARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITT 149 (587)
T ss_pred -HHHHCCCC----eEEechhHcCeEecCC--------CC-ceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEee
Confidence 57899998 8999998877776542 22 378888999999999999999999975 43 23477776
Q ss_pred c---CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccccCHHHHHHHHH
Q 010815 161 C---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 161 i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~~e~~~~~~ 208 (500)
+ ++|.+|+.||.+|+||+++|+|||||++ | ++++|++++.+|+.++..
T Consensus 150 lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~ 207 (587)
T PRK07431 150 LGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELAS 207 (587)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHh
Confidence 5 8999999999999999999999999984 3 589999999999999863
No 61
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.69 E-value=6.3e-16 Score=164.57 Aligned_cols=181 Identities=16% Similarity=0.171 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCc---------------------------cCCCHH--
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRY---------------------------RITDSE-- 57 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~---------------------------r~t~~~-- 57 (500)
+.++++.|......|+++|+||++.+.++..|.+........++. +.++..
T Consensus 18 ~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 97 (441)
T TIGR00657 18 IRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRLLDAELV 97 (441)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence 567888888777889999999999999988887776544332210 000000
Q ss_pred ------HHHHHHHHHh-HHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeee
Q 010815 58 ------SLAAAMEAAG-GIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKV 130 (500)
Q Consensus 58 ------~l~~~~~~~~-~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~v 130 (500)
..+. ..+.| .++..++.. .|+++|++ ++++++.+..+++... ++....+..+
T Consensus 98 ~~~~~~~~d~-ils~GE~~s~~l~~~--------~l~~~Gi~----a~~l~~~~~~l~t~~~--------~~~~~~~~~~ 156 (441)
T TIGR00657 98 LEEKPREMDR-ILSFGERLSAALLSA--------ALEELGVK----AVSLLGGEAGILTDSN--------FGRARVIIEI 156 (441)
T ss_pred hhcCcchHhh-eecHHHHHHHHHHHH--------HHHhCCCC----CEEEEcCcceEEecCC--------CCceeecHhh
Confidence 0011 12224 555554443 68899998 8999999988777543 2222246678
Q ss_pred CHHHHHHHHhCCCcEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccccC
Q 010815 131 DVTRMRERLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLT 199 (500)
Q Consensus 131 d~~~I~~lL~~g~IPVi~~-~~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~ 199 (500)
+.+.|..+++.|.|||+++ ++.+..|+..++ ++|.+|+.||.+|+|++|+++|||||++ | ++++|++++
T Consensus 157 ~~~~l~~~l~~~~vpVv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is 236 (441)
T TIGR00657 157 LTERLEPLLEEGIIPVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEIS 236 (441)
T ss_pred hHHHHHHHHhcCCEEEEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccC
Confidence 9999999999999999999 467778888887 7999999999999999999999999984 3 588999999
Q ss_pred HHHHHHHHH
Q 010815 200 LQEADSLIR 208 (500)
Q Consensus 200 ~~e~~~~~~ 208 (500)
.+|+.++..
T Consensus 237 ~~ea~el~~ 245 (441)
T TIGR00657 237 YEEMLELAS 245 (441)
T ss_pred HHHHHHHHh
Confidence 999998864
No 62
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.67 E-value=2e-15 Score=144.08 Aligned_cols=73 Identities=16% Similarity=0.224 Sum_probs=64.4
Q ss_pred CHHHHHHHHhCCCcEEEcCccc----CCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC-CCCccccccCHHHH
Q 010815 131 DVTRMRERLDGGCLVILSNLGY----SSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD-ESGHLIRFLTLQEA 203 (500)
Q Consensus 131 d~~~I~~lL~~g~IPVi~~~~~----~~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~-~~g~~I~~i~~~e~ 203 (500)
+.+.+.+++..|.|||+.|... +..++.+|+|+|++|+.+|.+|+|++|+++|||||++ .++++|++++.+++
T Consensus 80 ~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~da~~i~~i~~~e~ 157 (203)
T cd04240 80 TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKDGKLVNEIAAAEL 157 (203)
T ss_pred CHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCCCcCccccCHHHh
Confidence 4678999999999999999866 4457788999999999999999999999999999985 46899999987664
No 63
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.64 E-value=2e-14 Score=140.92 Aligned_cols=202 Identities=17% Similarity=0.157 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChH-HHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~-~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+..+++.|+.+...|++++||||||. +....++++++ ++..++.+-+....+|..+... .
T Consensus 29 i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~-----------~~~~~D~ig~~g~~lna~ll~~--------~ 89 (247)
T PRK14557 29 LEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGI-----------DRVEADNIGTLGTIINSLMLRG--------V 89 (247)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCC-----------ChHHHHHHHHHHHHHHHHHHHH--------H
Confidence 67889999999999999999999987 33345656553 2335566667778888777664 2
Q ss_pred hhhc-CCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCc-ccCCCCCeeecCH
Q 010815 86 IRRH-GDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNL-GYSSSGEVLNCNT 163 (500)
Q Consensus 86 l~~~-Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i~~ 163 (500)
|+.. +.. ..+++... +......++...+...|++|.|||+++. +. -.+++
T Consensus 90 l~~~~~~~------------~~i~t~~~----------~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~------~~~st 141 (247)
T PRK14557 90 LTSKTNKE------------VRVMTSIP----------FNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQ------PFVTT 141 (247)
T ss_pred HHhhhCCc------------eeEEeccc----------cccccchhhHHHHHHHHhCCCEEEEECCcCC------CccCh
Confidence 3332 221 11222111 1111223455667777999999999764 21 35779
Q ss_pred HHHHHHHHHHcCCCEEEEE-ecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCC
Q 010815 164 YEVATACALAIEADKLICI-IDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHS 235 (500)
Q Consensus 164 D~~a~~lA~~l~Ad~li~l-Tdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (500)
|.+|+.+|..++||.|+++ |||||++ |++++|++|+..|+. ..+. ++
T Consensus 142 D~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~---~~------------------- 196 (247)
T PRK14557 142 DYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNI---QV------------------- 196 (247)
T ss_pred HHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCH---HH-------------------
Confidence 9999999999999999999 5999983 358999999876552 1110 00
Q ss_pred CCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccc
Q 010815 236 DSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGT 315 (500)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 315 (500)
|. ..|+..|.++|++ ++|+|++
T Consensus 197 -------------------------------------------------------~~--~~A~~~a~~~gi~-v~I~ng~ 218 (247)
T PRK14557 197 -------------------------------------------------------MD--QAALLLARDYNLP-AHVFNFD 218 (247)
T ss_pred -------------------------------------------------------HH--HHHHHHHHHCCCc-EEEEeCC
Confidence 21 2466778888997 8999999
Q ss_pred cCceeeehhhhcCCCcceeecccc
Q 010815 316 IGGVLLLELFKRDGMGTMVASDLY 339 (500)
Q Consensus 316 ~~~~ll~~l~~~~~~GT~i~~d~~ 339 (500)
.|+.| ..++.++..||.|.+...
T Consensus 219 ~~~~l-~~~l~g~~~GT~i~~~~~ 241 (247)
T PRK14557 219 EPGVM-RRICLGEHVGTLINDDAS 241 (247)
T ss_pred CChHH-HHHHcCCCCcEEEecCcc
Confidence 99865 566677888999987665
No 64
>PRK07757 acetyltransferase; Provisional
Probab=99.63 E-value=8.3e-15 Score=132.72 Aligned_cols=131 Identities=32% Similarity=0.603 Sum_probs=112.0
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 419 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~ 419 (500)
+.||+++.+|++.+.+++............+.+.+..++..++++..+++++|++.+.... ....++..++|+|+|||+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~lvG~~~l~~~~-~~~~~i~~v~V~p~~rg~ 80 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGLMLPRSLDELYENIRDFYVAEEEGEIVGCCALHILW-EDLAEIRSLAVSEDYRGQ 80 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCCccCCCHHHHHhccCcEEEEEECCEEEEEEEEEecc-CCceEEEEEEECHHHcCC
Confidence 4699999999999999998776665555667777778888888888999999999997543 456789999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhh
Q 010815 420 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKR 472 (500)
Q Consensus 420 GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~ 472 (500)
|+|+.|+.++++++++.++..+.+.+ .+.+||+|+||+..+...+|+..|..
T Consensus 81 Glg~~Ll~~l~~~a~~~g~~~i~~~~-~~~~~Y~k~GF~~~~~~~~~~~~~~~ 132 (152)
T PRK07757 81 GIGRMLVEACLEEARELGVKRVFALT-YQPEFFEKLGFREVDKEALPQKVWAD 132 (152)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEe-CcHHHHHHCCCEEcccccCChhHHhc
Confidence 99999999999999999999887766 46899999999999998888766543
No 65
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.59 E-value=1.2e-14 Score=130.06 Aligned_cols=125 Identities=21% Similarity=0.293 Sum_probs=96.8
Q ss_pred ccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecC----CCeEEEEEE
Q 010815 339 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFK----EKCGEVAAI 410 (500)
Q Consensus 339 ~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----~~~~v~~~dg~IVG~~~l~~~~~----~~~~~I~~l 410 (500)
..+||+++.+|++.+.+++.+.....+......+.+...+ ..+++++.++++||++.+..... ...++|..+
T Consensus 3 ~~~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~~~~~i~~l 82 (144)
T PRK10146 3 ACELRPATQYDTDAVYALICELKQAEFDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVNWIGEIQEL 82 (144)
T ss_pred ccEEeeCcHhhHHHHHHHHHHHhcccCCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccchhheehee
Confidence 3469999999999999998765544332222222333332 34677888999999999864321 224578899
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 411 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 411 ~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
+|+|+|||+|+|+.|+.+++++|++.|++.+.+.+ ..|++||+++||+..+..
T Consensus 83 ~v~p~~rg~GiG~~Ll~~~~~~a~~~~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~~ 139 (144)
T PRK10146 83 VVMPQARGLNVGSKLLAWAEEEARQAGAEMTELSTNVKRHDAHRFYLREGYEQSHFR 139 (144)
T ss_pred EECHHHcCCCHHHHHHHHHHHHHHHcCCcEEEEecCCCchHHHHHHHHcCCchhhhh
Confidence 99999999999999999999999999999999987 479999999999987543
No 66
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.58 E-value=9.5e-14 Score=135.11 Aligned_cols=202 Identities=18% Similarity=0.151 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNI 86 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l 86 (500)
+..++++|+.+.+.|+++.||-|||...--...+.+.. .++...+..-++...+|..+.+. +|
T Consensus 40 ~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~---------~~r~~~D~~GmlaT~iNal~l~~--------~l 102 (249)
T PRK14556 40 AQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNK---------IRRATADSMGMIATMINALALRD--------ML 102 (249)
T ss_pred HHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCC---------CchhhhhHHHHHHHHHHHHHHHH--------HH
Confidence 78899999999999999999999998754322221111 24455666667778888766553 67
Q ss_pred hhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHH
Q 010815 87 RRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEV 166 (500)
Q Consensus 87 ~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~ 166 (500)
.+.|++ +.-++..... +..+..+.+.+.+.|+.|-|||+..-. | .-++++|++
T Consensus 103 ~~~~~~----~~v~sa~~~~------------------~~~e~~~~~~~~~~l~~g~vvi~~gg~----G-~p~~StD~l 155 (249)
T PRK14556 103 ISEGVD----AEVFSAKGVD------------------GLLKVASAHEFNQELAKGRVLIFAGGT----G-NPFVTTDTT 155 (249)
T ss_pred HHcCCC----eEEeeccccC------------------cCCCCCCHHHHHHHHhCCCEEEEECCC----C-CCcCCcHHH
Confidence 788877 3333322211 011233788888999999999976531 1 235789999
Q ss_pred HHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCCCc
Q 010815 167 ATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDSIG 239 (500)
Q Consensus 167 a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (500)
|+.+|..++||.|+++|||||++ |+.+++++++..|.... +. ++
T Consensus 156 AallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l---~v----------------------- 206 (249)
T PRK14556 156 ASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSK---EL---NV----------------------- 206 (249)
T ss_pred HHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhccc---ch---Hh-----------------------
Confidence 99999999999999999999984 34678888876654221 00 00
Q ss_pred cccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccCce
Q 010815 240 SVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIGGV 319 (500)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 319 (500)
| +..|+..+.++|++ ++|+|++.|++
T Consensus 207 ---------------------------------------------------m--d~~A~~~a~~~gIp-i~I~ng~~~~~ 232 (249)
T PRK14556 207 ---------------------------------------------------M--DLGAFTQCRDFGIP-IYVFDLTQPNA 232 (249)
T ss_pred ---------------------------------------------------H--HHHHHHHHHHCCCc-EEEECCCCchH
Confidence 2 24466677789998 89999999987
Q ss_pred eeehhhhcCCCcceeec
Q 010815 320 LLLELFKRDGMGTMVAS 336 (500)
Q Consensus 320 ll~~l~~~~~~GT~i~~ 336 (500)
| ..++.++..||.|.-
T Consensus 233 L-~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 233 L-VDAVLDSKYGTWVTL 248 (249)
T ss_pred H-HHHHcCCCCceEEEe
Confidence 5 556667778999853
No 67
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.56 E-value=6.4e-14 Score=130.01 Aligned_cols=127 Identities=28% Similarity=0.548 Sum_probs=102.0
Q ss_pred cccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEEccCC
Q 010815 338 LYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPEC 416 (500)
Q Consensus 338 ~~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~-~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~y 416 (500)
+.+++|+++++|.+.+.++++...............+......++++. .+++++|++.+.... ...++|..++|+|+|
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~iiG~~~~~~~~-~~~~~i~~l~V~p~~ 82 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGRILLEKNLVTLYEAVQEFWVAEHLDGEVVGCGALHVMW-EDLAEIRTVAVDPAA 82 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcCccccchHHHHHhhcCcEEEEEecCCcEEEEEEEeecC-CCceEEEEEEECHHH
Confidence 346899999999999999988766543333333334444556677887 889999999887543 356789999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccc
Q 010815 417 RGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIP 466 (500)
Q Consensus 417 RG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp 466 (500)
||+|+|+.|+++++++++++|++++.+.+ .+.+||+|+||+..+....+
T Consensus 83 rgkGiG~~Ll~~~~~~a~~~g~~~l~~~~-~~~~fY~k~GF~~~~~~~~~ 131 (169)
T PRK07922 83 RGRGVGHAIVERLLDVARELGLSRVFVLT-FEVEFFARHGFVEIDGTPVT 131 (169)
T ss_pred hCCCHHHHHHHHHHHHHHHcCCCEEEEEe-ccHHHHHHCCCEECccccCC
Confidence 99999999999999999999999998877 46899999999998765433
No 68
>PTZ00330 acetyltransferase; Provisional
Probab=99.53 E-value=1.7e-13 Score=123.03 Aligned_cols=124 Identities=24% Similarity=0.356 Sum_probs=92.9
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc------CcEEEEEECCeEEEEEEEeeec-----CCCeEEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL------DSFYVVEREGQIIACAALFPFF-----KEKCGEVA 408 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l------~~~~v~~~dg~IVG~~~l~~~~-----~~~~~~I~ 408 (500)
+.||+++++|++.+.+++................+.... ..+++...++++||++.+...+ ....++|.
T Consensus 7 ~~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~~~~~~~i~ 86 (147)
T PTZ00330 7 LELRDLEEGDLGSVLELLSHLTSAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRGGKCVGHIE 86 (147)
T ss_pred EEEEEcccccHHHHHHHHHHhcCCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccCCCceEEEE
Confidence 579999999999999998765332211111112222111 1345556789999999886322 11346888
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 409 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 409 ~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
.++|+|+|||+|+|+.|++++++++++.++..+.+.+ ..+++||+|+||+..+..
T Consensus 87 ~~~V~~~~rg~Gig~~l~~~~~~~a~~~~~~~l~l~~n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 87 DVVVDPSYRGQGLGRALISDLCEIARSSGCYKVILDCTEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEecChHHHHHHHHCCCEEeceE
Confidence 9999999999999999999999999999998888877 578999999999998754
No 69
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.48 E-value=4.1e-13 Score=148.41 Aligned_cols=133 Identities=29% Similarity=0.575 Sum_probs=111.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 419 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~ 419 (500)
++||+++.+|++.+.+++..+.......+++.+.+......+++++.++++|||+.+... +....+|..++|+|+||||
T Consensus 464 m~IR~a~~~D~~~I~~L~~~~~~~~~~~~~~~~~l~~~~~~~~Va~~~g~IVG~~~l~~~-~~~~~~I~~i~V~P~~rGk 542 (614)
T PRK12308 464 VKVRPARLTDIDAIEGMVAYWAGLGENLPRSRNELVRDIGSFAVAEHHGEVTGCASLYIY-DSGLAEIRSLGVEAGWQVQ 542 (614)
T ss_pred CEEEECCHHHHHHHHHHHHHHHhhhcccccCHHHHhcccCcEEEEEECCEEEEEEEEEEc-CCCeEEEEEEEECHHHcCC
Confidence 469999999999999998776554444556666777777788999999999999998753 3456789999999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccchhhhhhhc
Q 010815 420 GQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPEERRKRIN 474 (500)
Q Consensus 420 GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~~~~~~~~ 474 (500)
|||+.|++++++++++.|++.+.+.+ .+.+||+|+||+..+...+|......-.
T Consensus 543 GIGk~Ll~~l~~~ak~~g~~~i~l~~-~a~~FYek~GF~~~~~~~~~~~~~~~~~ 596 (614)
T PRK12308 543 GQGSALVQYLVEKARQMAIKKVFVLT-RVPEFFMKQGFSPTSKSLLPEKVLKDCD 596 (614)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEee-CcHHHHHHCCCEECCcccCChHHHHhhc
Confidence 99999999999999999999998877 5689999999999999988876554433
No 70
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.48 E-value=6.1e-13 Score=134.15 Aligned_cols=115 Identities=17% Similarity=0.209 Sum_probs=89.7
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcC-cccCCCCCeeec--
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSN-LGYSSSGEVLNC-- 161 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~-~~~~~~g~~~~i-- 161 (500)
.|+++|++ +..+++.+.++++....+ +... .++....++. .+..+++.+.|||+++ ++.+..|+.+++
T Consensus 136 ~L~~~Gi~----a~~l~~~~~~i~t~~~~~--~a~~--~~~~~~~i~~-~l~~ll~~~~vpVv~Gfig~~~~g~~ttlgR 206 (298)
T cd04244 136 ALRSLGIK----ARALDGGEAGIITDDNFG--NARP--LPATYERVRK-RLLPMLEDGKIPVVTGFIGATEDGAITTLGR 206 (298)
T ss_pred HHHhCCCC----eEEEcHHHcceeecCccc--cccc--chhHHHHHHH-HHHHHhhcCCEEEEeCccccCCCCCEEEecC
Confidence 68899998 899998887777654321 0000 0222333433 3457889999999999 577888999988
Q ss_pred -CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccccCHHHHHHHHH
Q 010815 162 -NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 162 -~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~~e~~~~~~ 208 (500)
++|..|+.+|.+|+|+.++++|||||++ | ++++|++++.+|+.++..
T Consensus 207 ggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~ 261 (298)
T cd04244 207 GGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAY 261 (298)
T ss_pred CChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHh
Confidence 9999999999999999999999999984 3 589999999999999864
No 71
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.46 E-value=3.5e-13 Score=118.07 Aligned_cols=119 Identities=21% Similarity=0.355 Sum_probs=89.3
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhh--cCcEEEEEECCeEEEEEEEeee----cC--CCeEEEEEEEE
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA--LDSFYVVEREGQIIACAALFPF----FK--EKCGEVAAIGV 412 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~--l~~~~v~~~dg~IVG~~~l~~~----~~--~~~~~I~~l~V 412 (500)
+||+++++|++++.+|+...+................ ...++++.+++++||++.+.+. .+ -...++..++|
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~~~i~~v~v 80 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAFGDSESPPEIWEYFRNLYGPGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKAAYIGDVAV 80 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHTTEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHCCCCCCchhhhhhhhcccCcCcEEEEEECCEEEEEEEEEEEEEEECCEEEEEEEEEEEEE
Confidence 4899999999999999887766544332111112221 2578888999999999998764 11 13578999999
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEe
Q 010815 413 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 460 (500)
Q Consensus 413 ~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~ 460 (500)
+|+|||+|+|++|++++++.++++|+..+++.. ...+||+++||+.+
T Consensus 81 ~p~~R~~Gl~~~L~~~~~~~~~~~g~~~~~l~~-~~~~~Y~~~G~~~~ 127 (127)
T PF13527_consen 81 DPEYRGRGLGRQLMRALLERARERGVPFIFLFP-SSPPFYRRFGFEYA 127 (127)
T ss_dssp -GGGTTSSHHHHHHHHHHHHHHHTT-SEEEEE--SSHHHHHHTTEEEE
T ss_pred CHHHcCCCHHHHHHHHHHHHHHhCCCCEEEEec-CChhhhhcCCCEEC
Confidence 999999999999999999999999999888876 56899999999863
No 72
>PRK03624 putative acetyltransferase; Provisional
Probab=99.45 E-value=1e-12 Score=115.96 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=92.9
Q ss_pred ccccccCCcccHHHHHHHHHHHHHcCcCccCC--HHHHHhh----cCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEE
Q 010815 339 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRT--DEELLKA----LDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGV 412 (500)
Q Consensus 339 ~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s--~~~~~~~----l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V 412 (500)
.+.||+++.+|++.+.+++... .....+. ...+... ...++++..++++||++.+... ....++..++|
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~--~~~~~i~~i~v 76 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERC---DLTRPWNDPEMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYD--GHRGWAYYLAV 76 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhc---CCCcchhhHHHHHHHHhcCCCceEEEEEcCCcEEEEEEeecc--CCCceEEEEEE
Confidence 3579999999999999998765 1211221 1112221 2346777888999999987632 23467788999
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 413 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 413 ~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
+|+|||+|+|+.|++.+++++++.+++.+.+.+ ..+.+||+|+||+..+...
T Consensus 77 ~p~~rg~Gig~~ll~~~~~~~~~~~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~~ 132 (140)
T PRK03624 77 HPDFRGRGIGRALVARLEKKLIARGCPKINLQVREDNDAVLGFYEALGYEEQDRIS 132 (140)
T ss_pred CHHHhCCCHHHHHHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHcCCccccEEe
Confidence 999999999999999999999999999988877 4789999999999876543
No 73
>PRK06291 aspartate kinase; Provisional
Probab=99.45 E-value=1.8e-12 Score=138.86 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=96.4
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCc--cCCcccceeeeEeeeCHHHHHH
Q 010815 60 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGV--VDGVDYGATGEVKKVDVTRMRE 137 (500)
Q Consensus 60 ~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~--~~~~d~g~~G~v~~vd~~~I~~ 137 (500)
+.+...-..++..+... .|+++|++ +..+++.+.++++....+. +...++++. .+.++.
T Consensus 123 d~i~s~GE~~Sa~l~~~--------~L~~~Gi~----a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~-------~~~~~~ 183 (465)
T PRK06291 123 DYILSFGERLSAPILSG--------ALRDLGIK----SVALTGGEAGIITDSNFGNARPLPKTYERV-------KERLEP 183 (465)
T ss_pred HHHHhhhHHHHHHHHHH--------HHHhCCCC----eEEEchHHCcEEecCCCCceeechhhHHHH-------HHHHHH
Confidence 33333334446555554 68899998 8899988877777543210 000111111 246888
Q ss_pred HHhCCCcEEEcC-cccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccccCHHHHHHH
Q 010815 138 RLDGGCLVILSN-LGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFLTLQEADSL 206 (500)
Q Consensus 138 lL~~g~IPVi~~-~~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i~~~e~~~~ 206 (500)
+++.|.|||+++ ++.+.+|...++ ++|..|+.+|.+|+|+.++++|||||++ | ++++|++++.+|+.++
T Consensus 184 ll~~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l 263 (465)
T PRK06291 184 LLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMEL 263 (465)
T ss_pred HhhcCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHH
Confidence 899999999999 477788999888 9999999999999999999999999984 3 6899999999998888
Q ss_pred H
Q 010815 207 I 207 (500)
Q Consensus 207 ~ 207 (500)
.
T Consensus 264 ~ 264 (465)
T PRK06291 264 S 264 (465)
T ss_pred H
Confidence 4
No 74
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.45 E-value=1.2e-12 Score=130.33 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=98.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccC-CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 415 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~-s~~~~~~~l---~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~ 415 (500)
+.||+++++|++.+.+|+.+.+.. ++.+. ..+.+...+ ..++++..++++||++.+........++|..++|+|+
T Consensus 116 ~~IR~a~~~D~~~l~~L~~~v~~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~~~~~eI~~i~V~P~ 194 (266)
T TIGR03827 116 FTLRIATEDDADAMAALYRKVFPT-YPFPIHDPAYLLETMKSNVVYFGVEDGGKIIALASAEMDPENGNAEMTDFATLPE 194 (266)
T ss_pred eEEEECCHHHHHHHHHHHHHHhcc-CCCCccCHHHHHHHhcCCcEEEEEEECCEEEEEEEEecCCCCCcEEEEEEEECHH
Confidence 579999999999999999886543 22222 223333333 3467788899999999875444456789999999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 416 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 416 yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
|||+|+|+.|++++++++++.|++.+++.+ ..+..+|+|+||+..+..
T Consensus 195 yRG~GiG~~Ll~~l~~~a~~~g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l 246 (266)
T TIGR03827 195 YRGKGLAKILLAAMEKEMKEKGIRTAYTIARASSYGMNITFARLGYAYGGTL 246 (266)
T ss_pred HcCCCHHHHHHHHHHHHHHHCCCcEEEeehhhcchhHHHHHHHcCCccccEE
Confidence 999999999999999999999999988877 467899999999998765
No 75
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.41 E-value=4.5e-12 Score=109.04 Aligned_cols=103 Identities=30% Similarity=0.474 Sum_probs=81.9
Q ss_pred cHHHHHHHHHHHHHcCcCcc---------CCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccC
Q 010815 349 DLSGIKQIIQPLVESGALVR---------RTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 415 (500)
Q Consensus 349 D~~~I~~L~~~~~~~~~~~~---------~s~~~~~~~l----~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~ 415 (500)
|++++.+|+.+.+....... .+.+.+...+ ..+++++.+++++|++.+. ...+|..++|+|+
T Consensus 1 D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ivG~~~~~-----~~~~i~~l~v~p~ 75 (117)
T PF13673_consen 1 DIPAIAELYREAWQENYWDYGPEQIDAWRYSPEDLEEYLEEGSHTIFVAEEGGEIVGFAWLE-----PDGEISHLYVLPE 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHTTTTSHHHHHHHHSSHHHHHHHHCTCCCEEEEEEETTEEEEEEEEE-----TCEEEEEEEE-GG
T ss_pred CHHHHHHHHHHHHHHhccCCCHHHHHHHhcCHHHHHHHHHhcCCEEEEEEECCEEEEEEEEc-----CCCeEEEEEEChh
Confidence 78899999988666543221 3455555554 3589999999999999986 2344899999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCC
Q 010815 416 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGF 457 (500)
Q Consensus 416 yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF 457 (500)
|||+|+|+.|++++++++++ +++.+.+.. ..+.+||+++||
T Consensus 76 ~r~~Gig~~Ll~~~~~~~~~-~~~~l~~~~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 76 YRGRGIGRALLDAAEKEAKD-GIRRLTVEANERARRFYRKLGF 117 (117)
T ss_dssp GTTSSHHHHHHHHHHHHHTT-TCEEEEEEC-HHHHHHHHHTT-
T ss_pred hcCCcHHHHHHHHHHHHHHc-CCcEEEEEeCHHHHHHHHhCCC
Confidence 99999999999999999977 898888877 579999999998
No 76
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.39 E-value=5.9e-12 Score=111.13 Aligned_cols=124 Identities=22% Similarity=0.293 Sum_probs=99.9
Q ss_pred ccccccCCcccHHHHHHHHHHHHHcC---cCccCCHHHHHhh------cCcEEEEEE---CCeEEEEEEEeeecCC----
Q 010815 339 YEGTRTAKVTDLSGIKQIIQPLVESG---ALVRRTDEELLKA------LDSFYVVER---EGQIIACAALFPFFKE---- 402 (500)
Q Consensus 339 ~~~iR~a~~~D~~~I~~L~~~~~~~~---~~~~~s~~~~~~~------l~~~~v~~~---dg~IVG~~~l~~~~~~---- 402 (500)
..+||.+++.|.+.|.+|++++..-+ .+...+.+.+.+. +..++++.. +..++|++.+....+.
T Consensus 3 ~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW~~k 82 (163)
T KOG3216|consen 3 NIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDGFIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTWLGK 82 (163)
T ss_pred ceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhhccCCCccEEEEEEEecCCCceeEEeeeeccccccccc
Confidence 46799999999999999999864432 2344455555553 234555544 7899999999865543
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
...+|.+++|.|+|||+|+|+.|++.+-+.|.+.|+.++...+ .+|+.||+|.|++..+.
T Consensus 83 ~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A~~~G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 83 QGIYLEDLYVREQYRGKGIGSKLLKFVAEEADKLGTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred ceEEEEeeEecchhcccChHHHHHHHHHHHHHHcCCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 4568999999999999999999999999999999999998888 68999999999998654
No 77
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.38 E-value=4.5e-12 Score=102.25 Aligned_cols=75 Identities=32% Similarity=0.524 Sum_probs=68.8
Q ss_pred EEECCeEEEEEEEeeecCC----CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhC
Q 010815 384 VEREGQIIACAALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSR 455 (500)
Q Consensus 384 ~~~dg~IVG~~~l~~~~~~----~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~ 455 (500)
+++++++||++.+...... ...+|..++|+|+|||+|+|+.|++++++++++.+++.+.+.+ ..+.+||+|+
T Consensus 1 ~~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~k~ 80 (83)
T PF00583_consen 1 AEEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYEKL 80 (83)
T ss_dssp EEETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHHHT
T ss_pred CcCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHHHc
Confidence 4689999999999876553 7899999999999999999999999999999999999999988 5689999999
Q ss_pred CCe
Q 010815 456 GFR 458 (500)
Q Consensus 456 GF~ 458 (500)
||+
T Consensus 81 Gf~ 83 (83)
T PF00583_consen 81 GFE 83 (83)
T ss_dssp TEE
T ss_pred CCC
Confidence 996
No 78
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.37 E-value=3.5e-12 Score=115.19 Aligned_cols=121 Identities=25% Similarity=0.388 Sum_probs=90.3
Q ss_pred cccccCCcccHH-HHHHHHHHHHHcCcCccCCHHHHHhhc---------CcEEEEEE--CCeEEEEEEEeee-----cCC
Q 010815 340 EGTRTAKVTDLS-GIKQIIQPLVESGALVRRTDEELLKAL---------DSFYVVER--EGQIIACAALFPF-----FKE 402 (500)
Q Consensus 340 ~~iR~a~~~D~~-~I~~L~~~~~~~~~~~~~s~~~~~~~l---------~~~~v~~~--dg~IVG~~~l~~~-----~~~ 402 (500)
+.||+++.+|++ .+.+++...... .+++.+.+.+.+ ..++++++ +++++|++.+... ...
T Consensus 7 ~~ir~~~~~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~~~~~~~ 83 (150)
T PLN02706 7 FKVRRLEISDKSKGFLELLQQLTVV---GDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERKFIRNCG 83 (150)
T ss_pred eEEeEhhhcccchHHHHHHHhccCC---CCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEeecccCCC
Confidence 469999999988 588887654222 234444443332 12445555 6899999887422 112
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
..+++..++|+|+|||+|+|+.|++.++++|++.|++++.+.+ ..+.+||+|+||+..+..
T Consensus 84 ~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~~g~~~i~l~~~~~N~~~y~k~GF~~~g~~ 145 (150)
T PLN02706 84 KVGHIEDVVVDSAARGKGLGKKIIEALTEHARSAGCYKVILDCSEENKAFYEKCGYVRKEIQ 145 (150)
T ss_pred cEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeccccHHHHHHCcCEEehhh
Confidence 4567888999999999999999999999999999999999998 445789999999987644
No 79
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.37 E-value=6.9e-12 Score=118.55 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=93.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHcC-cCccCC-HH----HHHh----hc----Cc--EEEEEECCeEEEEEEEeeecCCC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRRT-DE----ELLK----AL----DS--FYVVEREGQIIACAALFPFFKEK 403 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~-~~~~~s-~~----~~~~----~l----~~--~~v~~~dg~IVG~~~l~~~~~~~ 403 (500)
..||+++.+|.+.+.+++.+..... +..++. .+ .+.. .. .. +++...+++++|++.+.... ..
T Consensus 44 ~~lR~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~~~-~~ 122 (191)
T TIGR02382 44 PGARVATETDIPALRQLASAAFALSRFRAPWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRELN-DT 122 (191)
T ss_pred CcceeCChhhHHHHHHHHHHHhhccccCCCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEecC-CC
Confidence 4799999999999999998764321 211211 11 1111 11 12 23445678999999997543 34
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
.++++.++|+|+|||+|+|+.|+++++++++++|+.+|.+.+ ..+++||+|+||+..+..
T Consensus 123 ~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~~~g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~ 186 (191)
T TIGR02382 123 DARIGLLAVFPGAQSRGIGAELMQTALNWCYARGLTRLRVATQMGNTAALRLYIRSGANIESTA 186 (191)
T ss_pred ceEEEEEEECHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCccccce
Confidence 578999999999999999999999999999999999999987 579999999999987654
No 80
>PHA00673 acetyltransferase domain containing protein
Probab=99.37 E-value=7.4e-12 Score=113.19 Aligned_cols=120 Identities=23% Similarity=0.240 Sum_probs=91.1
Q ss_pred cCCcccHHHHHHHHHHHHHcCcC----ccC-CH---HHHHhhc-CcEEEEEECCeEEEEEEEeeec-----CCCeEEEEE
Q 010815 344 TAKVTDLSGIKQIIQPLVESGAL----VRR-TD---EELLKAL-DSFYVVEREGQIIACAALFPFF-----KEKCGEVAA 409 (500)
Q Consensus 344 ~a~~~D~~~I~~L~~~~~~~~~~----~~~-s~---~~~~~~l-~~~~v~~~dg~IVG~~~l~~~~-----~~~~~~I~~ 409 (500)
-++.+|++.|.+|+.+....... .+. .. +.+...- ..+++++++|++||++.+...+ +...+.|..
T Consensus 11 ~A~~~D~paI~~LLadd~l~~~r~d~~~~~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie~ 90 (154)
T PHA00673 11 FAELADAPTFASLCAEYAHESANADLAGRAPDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTES 90 (154)
T ss_pred hccHhhHHHHHHHHHhcccccccccccccchhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEEE
Confidence 47889999999998772111111 111 11 2222222 4577888899999988886543 225678999
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcH---HHHHHHHhCCCeEecee
Q 010815 410 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT---RTADWFKSRGFRECSIE 463 (500)
Q Consensus 410 l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~---~a~~fYek~GF~~~~~~ 463 (500)
++|+|++||+|||+.|+++++++|+++||..+++..+ ....||.++|++.....
T Consensus 91 l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~fy~~~g~~~~~~~ 147 (154)
T PHA00673 91 IFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQLLPAAGYRETNRT 147 (154)
T ss_pred EEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchHHHHhCCchhhchh
Confidence 9999999999999999999999999999999999884 57999999999987654
No 81
>PRK08373 aspartate kinase; Validated
Probab=99.36 E-value=9.9e-11 Score=119.65 Aligned_cols=178 Identities=14% Similarity=0.108 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCce-------------eeCC------------------c-cCC
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-------------YLGR------------------Y-RIT 54 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~-------------~~~g------------------~-r~t 54 (500)
+.++++-|.. ...|.++|+|.++-..++..|.++..... ..+. + ...
T Consensus 19 ~~~v~~ii~~-~~~~~~vvVVVSA~~gvTd~L~~l~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~l~~~~~~~~~~~ 97 (341)
T PRK08373 19 FEEALELVKY-LSEENEVVVVVSALKGVTDKLLKLAETFDKEALEEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLP 97 (341)
T ss_pred HHHHHHHHHH-HhcCCCEEEEecCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHhhccC
Confidence 3444444442 34688999999997777666544321100 0000 0 112
Q ss_pred CHHHHHHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeE----eee
Q 010815 55 DSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV----KKV 130 (500)
Q Consensus 55 ~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v----~~v 130 (500)
++...+.+......++..+.+. .|+++|++ +..+++.+- +.+... ++ ..++ ...
T Consensus 98 ~~~~~D~ils~GE~lSa~lla~--------~L~~~Gi~----a~~l~~~~~-i~t~~~--------~~-~a~i~~~~s~~ 155 (341)
T PRK08373 98 SEALRDYILSFGERLSAVLFAE--------ALENEGIK----GKVVDPWEI-LEAKGS--------FG-NAFIDIKKSKR 155 (341)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH--------HHHHCCCc----eEEEeHHHh-eeecCC--------cc-ceeechhhhhh
Confidence 3344566666666667777665 68899998 666665442 222110 00 0111 235
Q ss_pred CHHHHHHHHhCCCcEEEcCcccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCH
Q 010815 131 DVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL 200 (500)
Q Consensus 131 d~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~ 200 (500)
+.+.|..+++.|.|||+++...+.+|....+ ++|..|+.||.+|+|++++|+|||||+. |+.++|++++.
T Consensus 156 ~~~~l~~~l~~g~VpVv~Gf~g~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy 235 (341)
T PRK08373 156 NVKILYELLERGRVPVVPGFIGNLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSY 235 (341)
T ss_pred hHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCH
Confidence 6789999999999999998765666776665 7999999999999999999999999983 35789999999
Q ss_pred HHHHHHH
Q 010815 201 QEADSLI 207 (500)
Q Consensus 201 ~e~~~~~ 207 (500)
+|+.++.
T Consensus 236 ~Ea~ela 242 (341)
T PRK08373 236 DEALIAA 242 (341)
T ss_pred HHHHHHH
Confidence 9998774
No 82
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.35 E-value=8.5e-12 Score=111.37 Aligned_cols=125 Identities=20% Similarity=0.163 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHHHHcCcCccCCHHHHHh---hcCcEEEE-EECCe-EEEEEEEeeecC--CCeEEEEEEEEccCCcCCcH
Q 010815 349 DLSGIKQIIQPLVESGALVRRTDEELLK---ALDSFYVV-EREGQ-IIACAALFPFFK--EKCGEVAAIGVSPECRGQGQ 421 (500)
Q Consensus 349 D~~~I~~L~~~~~~~~~~~~~s~~~~~~---~l~~~~v~-~~dg~-IVG~~~l~~~~~--~~~~~I~~l~V~p~yRG~Gi 421 (500)
.++.|.+|+ ...+..+.+.-...- ...+++++ .+++. .||++.+..... ...++|..++|+++|||+||
T Consensus 26 ~l~~im~Li----~k~lsepyS~~tyrYf~~~wp~~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GI 101 (165)
T KOG3139|consen 26 YLADIMRLI----DKDLSEPYSIYTYRYFVPNWPCFCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGI 101 (165)
T ss_pred HHHHHHHHH----hhhcCchhHHHHHHhcccCCceEEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccH
Confidence 344566664 344444443333222 22334444 33333 588888764322 34689999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEE
Q 010815 422 GDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMK 484 (500)
Q Consensus 422 G~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~k 484 (500)
|++|++.+++.++++|+..|.+.| ..|.++|+++||...++. ..|..++...+.++
T Consensus 102 g~aLvr~aId~m~~~g~~eVvLeTe~~n~~A~~LY~sLGF~r~~r~-------~~YYlng~dA~rl~ 161 (165)
T KOG3139|consen 102 GKALVRKAIDAMRSRGYSEVVLETEVTNLSALRLYESLGFKRDKRL-------FRYYLNGMDALRLK 161 (165)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeccccchHHHHHHHhcCceEecce-------eEEEECCcceEEEE
Confidence 999999999999999999999999 479999999999997654 34555666555554
No 83
>PRK09831 putative acyltransferase; Provisional
Probab=99.35 E-value=9.4e-12 Score=112.38 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=86.2
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHH-----------hhc--CcEEEEEECCeEEEEEEEeeecCCCeEEE
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELL-----------KAL--DSFYVVEREGQIIACAALFPFFKEKCGEV 407 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~-----------~~l--~~~~v~~~dg~IVG~~~l~~~~~~~~~~I 407 (500)
.||+++++|.+.+.+++.+.+........+.+... ..+ ..++++..+++++|++.+.. .++
T Consensus 2 ~ir~a~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~iiG~~~~~~------~~i 75 (147)
T PRK09831 2 QIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFITCIE------HYI 75 (147)
T ss_pred ccccCChhhHHHHHHHHHHHHHHhhhhcCCHHHHHhccCCCHHHHHHHHhcCceEEEEECCEEEEEEEehh------cee
Confidence 58999999999999999876554332222222221 111 35778888999999988752 467
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceec
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~ 464 (500)
..++|+|+|||+|+|+.|++++++.+.+. .+... ..+.+||+|+||+..+...
T Consensus 76 ~~~~v~p~~~g~GiG~~Ll~~~~~~~~~l---~v~~~-~~a~~~Y~k~Gf~~~g~~~ 128 (147)
T PRK09831 76 DMLFVDPEYTRRGVASALLKPLIKSESEL---TVDAS-ITAKPFFERYGFQTVKQQR 128 (147)
T ss_pred eeEEECHHHcCCCHHHHHHHHHHHHhhhe---Eeecc-hhhHHHHHHCCCEEeeccc
Confidence 78999999999999999999999998762 22222 5789999999999998764
No 84
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.35 E-value=1.6e-11 Score=110.38 Aligned_cols=117 Identities=21% Similarity=0.280 Sum_probs=91.4
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc-Cc--EEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DS--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC 416 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l-~~--~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~y 416 (500)
++||+++.+|++.+.++.... ...+++...+.... .. .+++..+++++|++.+.... ....+..++|+|+|
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~--~~~~~~~i~v~~~~ 75 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRA----HAFPWSEKTFASNQGERYLNLKLTVNGQMAAFAITQVVL--DEATLFNIAVDPDY 75 (146)
T ss_pred cchhcCChhhhHHHHHHHHhc----CCCCCCHHHHHHHHhcCceEEEEEECCeEEEEEEEEeec--CceEEEEEEECHHH
Confidence 479999999999999986432 22344444443332 22 23456789999999887533 34667889999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 417 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 417 RG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
||+|+|+.|++.+++++++.++..+.+.+ ..+.+||+|+||+..+.
T Consensus 76 rg~G~g~~ll~~~~~~~~~~~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~ 125 (146)
T PRK09491 76 QRQGLGRALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEVTI 125 (146)
T ss_pred ccCCHHHHHHHHHHHHHHHCCCcEEEEEEccCCHHHHHHHHHcCCEEeee
Confidence 99999999999999999999999988876 57999999999998764
No 85
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.35 E-value=1.6e-11 Score=116.26 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=93.4
Q ss_pred cccccCCcccHHHHHHHHHHHHHcC-cCccC-CHH----HHHhhc---------CcEEEE-EECCeEEEEEEEeeecCCC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESG-ALVRR-TDE----ELLKAL---------DSFYVV-EREGQIIACAALFPFFKEK 403 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~-~~~~~-s~~----~~~~~l---------~~~~v~-~~dg~IVG~~~l~~~~~~~ 403 (500)
..||+++++|++.+.+++.+.+... +..++ +.+ .+..++ ..++++ +.++++||++.+.... ..
T Consensus 47 ~~iR~a~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~-~~ 125 (194)
T PRK10975 47 TGARVATETDIPALRQLAAQAFAQSRFRAPWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN-DT 125 (194)
T ss_pred CCcccCCcccHHHHHHHHHHHhhhccccCccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC-CC
Confidence 5699999999999999998764422 22111 111 111111 134444 4568999999987543 34
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
..+|..++|+|+|||+|+|+.|++.+++++++.|++.+.+.+ +.+.+||+|+||+..+..
T Consensus 126 ~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~~g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~ 189 (194)
T PRK10975 126 DARIGLLAVFPGAQGRGIGARLMQAALNWCQARGLTRLRVATQMGNLAALRLYIRSGANIESTA 189 (194)
T ss_pred ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHHCCCeEeEEE
Confidence 588989999999999999999999999999999999999887 578999999999998765
No 86
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.35 E-value=1.2e-11 Score=113.18 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=88.3
Q ss_pred cccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc-CcEEEEE-ECCeEEEEEEEeeec-CCCeEEEEEEEEccCCcC
Q 010815 342 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-DSFYVVE-REGQIIACAALFPFF-KEKCGEVAAIGVSPECRG 418 (500)
Q Consensus 342 iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l-~~~~v~~-~dg~IVG~~~l~~~~-~~~~~~I~~l~V~p~yRG 418 (500)
||+++.+|++.+.+|+.+..............+.... ..+++++ .++++||++.+.... .....++..++|+|+|||
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~l~V~p~~rg 80 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDLNSSYAYLLLCTDFADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQVAVDPRARG 80 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCcccceehhhhhhhcCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEEEEEChHhcc
Confidence 6899999999999998764221111111111121222 3456666 467999998765332 335578889999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEe
Q 010815 419 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFREC 460 (500)
Q Consensus 419 ~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~ 460 (500)
+|+|+.|+++++++++..++..+.+.+ +.+++||+|+||+..
T Consensus 81 ~GiG~~L~~~l~~~a~~~~~~~i~~~v~~~N~~a~~ly~k~G~~~~ 126 (157)
T TIGR02406 81 KGLARRLLEALLERVACERVRHLETTITPDNQASRALFKALARRRG 126 (157)
T ss_pred CcHHHHHHHHHHHHHHhCCCCEEEEEEcCCCHHHHHHHHHhCcccC
Confidence 999999999999999999999988887 578999999999874
No 87
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.34 E-value=1.7e-11 Score=111.49 Aligned_cols=123 Identities=16% Similarity=0.168 Sum_probs=91.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHc--C-cCccCCHHHHHhhc-----CcEEEEEECCeEEEEEEEeeecC---CCeEEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVES--G-ALVRRTDEELLKAL-----DSFYVVEREGQIIACAALFPFFK---EKCGEVA 408 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~--~-~~~~~s~~~~~~~l-----~~~~v~~~dg~IVG~~~l~~~~~---~~~~~I~ 408 (500)
+.||+++.+|++.+.+++.+.... . .....+.+.+...+ ..++++..++++||++.+..... ...+++
T Consensus 4 i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~- 82 (162)
T PRK10140 4 IVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADF- 82 (162)
T ss_pred cEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcCCCcEEEEEEECCEEEEEEEEecccccccceEEEE-
Confidence 579999999999999998643111 0 11122334444433 23567778899999999874322 223454
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 409 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 409 ~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
.++|+|+|||+|+|+.|++.+++++++ .++..+.+.+ +++++||+|+||+..+..
T Consensus 83 ~~~v~p~~rg~Gig~~ll~~l~~~~~~~~~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~ 142 (162)
T PRK10140 83 GICVDSRWKNRGVASALMREMIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTG 142 (162)
T ss_pred EEEECHHHcCCCHHHHHHHHHHHHHHhhCCccEEEEEEEcCCHHHHHHHHHCCCEEEeec
Confidence 599999999999999999999999988 6888888776 579999999999998763
No 88
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.33 E-value=4.6e-11 Score=108.18 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=90.7
Q ss_pred cccCCcccHHHHHHHHHHHHHcCcCcc----CCHHHHHhhc--------CcEEEEEE-CCeEEEEEEEeeecC-CCeEEE
Q 010815 342 TRTAKVTDLSGIKQIIQPLVESGALVR----RTDEELLKAL--------DSFYVVER-EGQIIACAALFPFFK-EKCGEV 407 (500)
Q Consensus 342 iR~a~~~D~~~I~~L~~~~~~~~~~~~----~s~~~~~~~l--------~~~~v~~~-dg~IVG~~~l~~~~~-~~~~~I 407 (500)
||+++++|++.+.+++.+.....+... .+.+...+++ ..++++.. +|++||++.+..... ...+++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~~~~~ 80 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNHTAEL 80 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTTEEEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCCEEEE
Confidence 699999999999999987543333321 2222332222 34566665 999999999986543 355666
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a-~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
.++|.|+||++|+|+.|+..++++| ++.|++++++.+ .++++||+++||+..+..
T Consensus 81 -~~~v~~~~~~~gig~~l~~~l~~~af~~~~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~ 140 (155)
T PF13420_consen 81 -SIYVSPDYRGKGIGRKLLDELIEYAFKELGIHKIYLEVFSSNEKAINFYKKLGFEEEGEL 140 (155)
T ss_dssp -EEEEEGGGTTSSHHHHHHHHHHHHH-HHTT-CEEEEEEETT-HHHHHHHHHTTEEEEEEE
T ss_pred -eeEEChhHCCCcHHHHHHHHHHHHhhhccCeEEEEEEEecCCHHHHHHHHhCCCEEEEEE
Confidence 5888899999999999999999999 889999999888 689999999999998754
No 89
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.33 E-value=1.4e-11 Score=111.60 Aligned_cols=126 Identities=25% Similarity=0.292 Sum_probs=94.7
Q ss_pred cccCC-cccHHHHHHHHHHHHHcCcC-ccCC---HHHHHhhc-----CcEEEEEECCeEEEEEEEeee-----cCCCeEE
Q 010815 342 TRTAK-VTDLSGIKQIIQPLVESGAL-VRRT---DEELLKAL-----DSFYVVEREGQIIACAALFPF-----FKEKCGE 406 (500)
Q Consensus 342 iR~a~-~~D~~~I~~L~~~~~~~~~~-~~~s---~~~~~~~l-----~~~~v~~~dg~IVG~~~l~~~-----~~~~~~~ 406 (500)
||+++ .+|++.|.+++.+.....+. ...+ .+.+.+.+ ...+++..||+++|++.+... ..+....
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~~~ 80 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDPSQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGDRG 80 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCCTHHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTEEE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCCCHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCEEE
Confidence 68999 99999999999775433332 2222 23333333 247888999999999988641 1346778
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHC-CCCEEEEEc----HHHHHHHHhCCCeEeceeccch
Q 010815 407 VAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSIEMIPE 467 (500)
Q Consensus 407 I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~-g~~~I~l~~----~~a~~fYek~GF~~~~~~~lp~ 467 (500)
++.++++|+|||+|+|+.+++.+++.+.+. ++++|.+.+ .+++++|+|+||+.++..++|.
T Consensus 81 ~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~~~~ 146 (152)
T PF13523_consen 81 IHRLIVDPEYRGQGLGKAMLRALIEFLFEDPGVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFEFPD 146 (152)
T ss_dssp EEEEESTGGGTTSSHHHHHHHHHHHHHHTSTT--EEEEEEBTT-HHHHHHHHHTT-EEEEEEEESS
T ss_pred EeeeeechhhcCCCHHHHHHHHHHHHHHhCCCCCEEEEecCcCCHHHHHHHHHcCCEEeeEEECCC
Confidence 889999999999999999999999999876 799999999 5799999999999999987774
No 90
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.32 E-value=1.9e-10 Score=109.52 Aligned_cols=199 Identities=18% Similarity=0.118 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEECChHHHHHH-HHHcCCCceeeCCccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchh
Q 010815 7 WLVMVQDIAFLHHLGIRFVLVPGTHVQIDKL-LSERGHEAKYLGRYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICN 85 (500)
Q Consensus 7 ~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~-~~~~g~~~~~~~g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~ 85 (500)
+.+++.+|+.+...|.++.||-|||...--. ..+.| .++...+..-++...+|..+.+. +
T Consensus 30 i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g-----------~~r~~~D~mGmlaTvmNal~L~~--------a 90 (238)
T COG0528 30 LDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAG-----------MDRVTADYMGMLATVMNALALQD--------A 90 (238)
T ss_pred HHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcC-----------CchhhhhHHHHHHHHHHHHHHHH--------H
Confidence 5789999999999999999999999765333 33323 24455666666777788755553 6
Q ss_pred hhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHH
Q 010815 86 IRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYE 165 (500)
Q Consensus 86 l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~ 165 (500)
|.+.|+++ ..++......+ ....+.....+.|+.|-|+|.+.-...+ .-+.|+
T Consensus 91 L~~~~~~~----~v~sai~~~~~------------------~e~~~~~~A~~~l~~grVvIf~gGtg~P-----~fTTDt 143 (238)
T COG0528 91 LERLGVDT----RVQSAIAMPQV------------------AEPYSRREAIRHLEKGRVVIFGGGTGNP-----GFTTDT 143 (238)
T ss_pred HHhcCCcc----eecccccCccc------------------cCccCHHHHHHHHHcCCEEEEeCCCCCC-----CCchHH
Confidence 78888873 22232221110 1234677778889999999997643233 367899
Q ss_pred HHHHHHHHcCCCEEEEEec-Cccc-------CCCCccccccCHHHHHHHHHhhhhhhhHHHhhhhhhhcccccccCCCCC
Q 010815 166 VATACALAIEADKLICIID-GPIL-------DESGHLIRFLTLQEADSLIRQRVKQSEIAANYVKAVAEEDITCFGHSDS 237 (500)
Q Consensus 166 ~a~~lA~~l~Ad~li~lTd-v~gv-------~~~g~~I~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (500)
+|+..|.+++||.|+..|+ |||+ +|+.+.+++++..|+.+....-
T Consensus 144 ~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~v--------------------------- 196 (238)
T COG0528 144 AAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKV--------------------------- 196 (238)
T ss_pred HHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCee---------------------------
Confidence 9999999999999999995 9998 3578999999999977663110
Q ss_pred CccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccchHHHHHHHHHHHcCCCeEEeeccccC
Q 010815 238 IGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYLSELAAAAFVCRRGVQRVHLLDGTIG 317 (500)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 317 (500)
|- ..|...+.+++++ +.++|...+
T Consensus 197 -----------------------------------------------------mD--~tA~~l~~~~~i~-i~Vfn~~~~ 220 (238)
T COG0528 197 -----------------------------------------------------MD--PTAFSLARDNGIP-IIVFNINKP 220 (238)
T ss_pred -----------------------------------------------------ec--HHHHHHHHHcCCc-EEEEeCCCC
Confidence 10 3355566778887 889999999
Q ss_pred ceeeehhhhcCCCcceee
Q 010815 318 GVLLLELFKRDGMGTMVA 335 (500)
Q Consensus 318 ~~ll~~l~~~~~~GT~i~ 335 (500)
++ +..++.++..||.|.
T Consensus 221 ~~-l~~~~~ge~~gT~V~ 237 (238)
T COG0528 221 GN-LKRALKGEEVGTIVE 237 (238)
T ss_pred cc-HHHHHcCCCCceEec
Confidence 98 566667778899885
No 91
>PRK10314 putative acyltransferase; Provisional
Probab=99.30 E-value=2.1e-11 Score=111.23 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=90.1
Q ss_pred cccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhh----cCcEEEEEECCeEEEEEEEeeecC-CCeEEEEEEEEccCC
Q 010815 342 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKA----LDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPEC 416 (500)
Q Consensus 342 iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~----l~~~~v~~~dg~IVG~~~l~~~~~-~~~~~I~~l~V~p~y 416 (500)
+..++.+++.++..+..+.+-.+...+.. +++.. ....+++..+++++|++.+.+..+ ....+|+.++|+|+|
T Consensus 9 ~~~l~~~~~~~~~~lR~~VF~~eq~~~~~--e~D~~d~~~~~~h~~~~~~~~~vg~~r~~~~~~~~~~~~i~rv~V~~~~ 86 (153)
T PRK10314 9 HSELSVSQLYALLQLRCAVFVVEQNCPYQ--DIDGDDLTGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEAL 86 (153)
T ss_pred hhhCCHHHHHHHHHHHHHHhhhhcCCCcc--ccCCCCCCCCcEEEEEEECCEEEEEEEEecCCCCCCCEEEEEEEECHHH
Confidence 45667777888888888876555443322 22221 122345567899999999985432 235799999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHC-CCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 417 RGQGQGDKLLDYIEKKAASL-GLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 417 RG~GiG~~Ll~~l~~~a~~~-g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
||+|+|+.|++++++++++. +.+.+.+.+ ..+.+||+|+||+..+..
T Consensus 87 rG~GiG~~Lm~~~~~~~~~~~~~~~i~L~a~~~a~~fY~k~GF~~~g~~ 135 (153)
T PRK10314 87 RGEKVGQQLMSKTLESCTRHWPDKPVYLGAQAHLQNFYQSFGFIPVTEV 135 (153)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCCcEEEehHHHHHHHHHHCCCEECCCc
Confidence 99999999999999999875 677888877 457899999999998765
No 92
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.29 E-value=2.7e-11 Score=105.69 Aligned_cols=109 Identities=24% Similarity=0.401 Sum_probs=84.9
Q ss_pred cHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHH
Q 010815 349 DLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDK 424 (500)
Q Consensus 349 D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~ 424 (500)
|.+.+.++....+ ..+++.+.+...+ ..+++..++++++|++.+.... ...++..++|+|+|||+|+|+.
T Consensus 1 d~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~--~~~~i~~~~v~~~~rg~G~g~~ 74 (131)
T TIGR01575 1 DLKAVLEIEAAAF----AFPWTEAQFAEELANYHLCYLLARIGGKVVGYAGVQIVL--DEAHILNIAVKPEYQGQGIGRA 74 (131)
T ss_pred CHHHHHHHHHhhC----CCCCCHHHHHHHhcCCCceEEEEecCCeEEEEEEEEecC--CCeEEEEEEECHHHcCCCHHHH
Confidence 5677777754433 3355656555544 2355666789999999987433 4567889999999999999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 425 LLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 425 Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
|++++++++++.+++.+.+.+ ..+.+||+++||+..+..
T Consensus 75 ll~~~~~~~~~~~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~ 117 (131)
T TIGR01575 75 LLRELIDEAKGRGVNEIFLEVRVSNIAAQALYKKLGFNEIAIR 117 (131)
T ss_pred HHHHHHHHHHHcCCCeEEEEEecccHHHHHHHHHcCCCccccc
Confidence 999999999999999998876 468999999999987653
No 93
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.29 E-value=4.6e-11 Score=96.12 Aligned_cols=75 Identities=36% Similarity=0.698 Sum_probs=64.0
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCe
Q 010815 380 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 458 (500)
Q Consensus 380 ~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~ 458 (500)
.+++++++++++|++.+.+.. ...+|..++|+|+|||+|+|+.|++++++.+.. +.+++.+ +.+.+||+++||+
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~--~~~~i~~~~v~~~~rg~Gig~~ll~~~~~~~~~---~~i~l~~~~~~~~fY~~~GF~ 78 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNE--DFAYIGYLAVDPEYRGKGIGSKLLNYLLEKAKS---KKIFLFTNPAAIKFYEKLGFE 78 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETT--TEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHTC---SEEEEEEEHHHHHHHHHTTEE
T ss_pred EEEEEEECCEEEEEEEEEEcC--CEEEEEEEEECHHHcCCCHHHHHHHHHHHHcCC---CcEEEEEcHHHHHHHHHCcCC
Confidence 578889999999999997443 488999999999999999999999999988843 4566766 6799999999998
Q ss_pred E
Q 010815 459 E 459 (500)
Q Consensus 459 ~ 459 (500)
+
T Consensus 79 ~ 79 (79)
T PF13508_consen 79 E 79 (79)
T ss_dssp E
T ss_pred C
Confidence 5
No 94
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.25 E-value=9.7e-11 Score=107.66 Aligned_cols=126 Identities=18% Similarity=0.247 Sum_probs=99.2
Q ss_pred ccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEECCeEEEEEEEeeecCC----CeEEEEEE
Q 010815 339 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVEREGQIIACAALFPFFKE----KCGEVAAI 410 (500)
Q Consensus 339 ~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----~~~~v~~~dg~IVG~~~l~~~~~~----~~~~I~~l 410 (500)
.+.||..++.|++.+.++.++.+..+. .....+.+...- ...+|+.+++++||++.+++..-. ...-++.+
T Consensus 3 ~~~ir~e~~~d~~~i~~~~~~aF~~~~-e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~~~~~LaPL 81 (171)
T COG3153 3 MMLIRTETPADIPAIEALTREAFGPGR-EAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEELGWLGLAPL 81 (171)
T ss_pred ccEEEecChhhHHHHHHHHHHHhhcch-HHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCcccceEEEEeE
Confidence 456999999999999999888777221 111222333322 346788888999999999875322 34568899
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEeceeccch
Q 010815 411 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIEMIPE 467 (500)
Q Consensus 411 ~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~~lp~ 467 (500)
+|+|+|||||||++|++..++.++..|+..+.+.- ...||.++||+......++.
T Consensus 82 aV~p~~qg~GIG~~Lvr~~le~a~~~G~~~v~vlG--dp~YY~rfGF~~~~~~~l~~ 136 (171)
T COG3153 82 AVDPEYQGQGIGSALVREGLEALRLAGASAVVVLG--DPTYYSRFGFEPAAGAKLYA 136 (171)
T ss_pred EEchhhcCCcHHHHHHHHHHHHHHHCCCCEEEEec--CcccccccCcEEcccccccc
Confidence 99999999999999999999999999999988865 67899999999998776663
No 95
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.24 E-value=1.9e-10 Score=105.52 Aligned_cols=124 Identities=28% Similarity=0.325 Sum_probs=100.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcC----ccCCHHHHHhhc----C---cEEEEEEC-CeEEEEEEEeeecCC----C
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGAL----VRRTDEELLKAL----D---SFYVVERE-GQIIACAALFPFFKE----K 403 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~----~~~s~~~~~~~l----~---~~~v~~~d-g~IVG~~~l~~~~~~----~ 403 (500)
+.||+++..|++.|.++|+........ .+.+.+.+..|. . .++|+..+ |+++|++.+.++... .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 469999999999999999987766543 445677777665 1 46666555 999999999876432 2
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
..+ ..++|+|+.||+|+|++|++.+++.+..+|++.+.... ..+.++++++||+..+...
T Consensus 82 tve-~SiYv~~~~~g~GiG~~Ll~~Li~~~~~~g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~ 145 (169)
T COG1247 82 TVE-LSIYLDPAARGKGLGKKLLQALITEARALGVRELVAGIESDNLASIALHEKLGFEEVGTFP 145 (169)
T ss_pred EEE-EEEEECcccccccHHHHHHHHHHHHHHhCCeEEEEEEEcCCCcHhHHHHHHCCCEEecccc
Confidence 334 49999999999999999999999999999998887776 4789999999999998763
No 96
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.22 E-value=7.7e-11 Score=128.47 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=93.5
Q ss_pred cccccC-CcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEE--CCeEEEEEEEeee-----cCCCeEEE
Q 010815 340 EGTRTA-KVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER--EGQIIACAALFPF-----FKEKCGEV 407 (500)
Q Consensus 340 ~~iR~a-~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----~~~~v~~~--dg~IVG~~~l~~~-----~~~~~~~I 407 (500)
+.||++ +..|++.+.+++.... ..+++.+.+.... ..++++.+ ++++||++..... ......++
T Consensus 83 ~~IR~~~~~~D~~~I~~L~~~~~----~~p~~~~~~~~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~~d~~~~~~i 158 (547)
T TIGR03103 83 FTVRRLRGPADVDAINRLYAARG----MVPVRVDFVLDHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAFNDPEHGSSL 158 (547)
T ss_pred cEEEeCCChhHHHHHHHHHHhcC----CCCCCHHHHHHHhcCCCceEEEEEECCCCeEEEEEEEEeccccccCCCCCeEE
Confidence 579997 6899999999987632 2233434333322 34677764 6899999875321 11234688
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceecc
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEMI 465 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~l 465 (500)
..++|+|+|||+|+|+.|+++++++++++|+..+.+.+ ..+++||+|+||+.+.....
T Consensus 159 ~~l~V~P~~Rg~GIG~~Ll~~l~e~a~~~G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 159 WCLAVDPQAAHPGVGEALVRALAEHFQSRGCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 99999999999999999999999999999999999987 57899999999998865543
No 97
>PRK10514 putative acetyltransferase; Provisional
Probab=99.20 E-value=2e-10 Score=102.84 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=81.6
Q ss_pred cccccCCcccHHHHHHHHHHHHHc--CcCccCCHHHHHhhc------CcEEEE-EECCeEEEEEEEeeecCCCeEEEEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVES--GALVRRTDEELLKAL------DSFYVV-EREGQIIACAALFPFFKEKCGEVAAI 410 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~--~~~~~~s~~~~~~~l------~~~~v~-~~dg~IVG~~~l~~~~~~~~~~I~~l 410 (500)
+.||+++.+|.+.+.+++.+.... .+..+.+.+.+...+ ..++++ ..++++||++.+.. .++..+
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~~~~------~~~~~~ 75 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATHDFLSAEDRAEIEELVRSFLPEAPLWVAVDERDQPVGFMLLSG------GHMEAL 75 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHhccCceEEEEecCCcEEEEEEEec------CcEeEE
Confidence 468999999999999998764332 122222333333322 223444 46789999998752 245689
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 411 GVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 411 ~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
+|+|+|||+|+|+.|++++++.+.+ +.+.+ +++.+||+|+||+..+...
T Consensus 76 ~v~p~~rgkGig~~Ll~~~~~~~~~-----i~~~v~~~N~~a~~~yek~Gf~~~~~~~ 128 (145)
T PRK10514 76 FVDPDVRGCGVGRMLVEHALSLHPE-----LTTDVNEQNEQAVGFYKKMGFKVTGRSE 128 (145)
T ss_pred EECHHhccCCHHHHHHHHHHHhccc-----cEEEeecCCHHHHHHHHHCCCEEecccc
Confidence 9999999999999999999987532 33333 5799999999999987754
No 98
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.19 E-value=2.3e-10 Score=116.91 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=96.4
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHcCc-CccCCHHHHHhhcC--cEEEEE--E---CCeEEEEEEEeeecCCCeEEEE
Q 010815 337 DLYEGTRTAKVTDLSGIKQIIQPLVESGA-LVRRTDEELLKALD--SFYVVE--R---EGQIIACAALFPFFKEKCGEVA 408 (500)
Q Consensus 337 d~~~~iR~a~~~D~~~I~~L~~~~~~~~~-~~~~s~~~~~~~l~--~~~v~~--~---dg~IVG~~~l~~~~~~~~~~I~ 408 (500)
+|.++||++++.|++.+.+|..+..+-.. ...++.+++...+. .++++. + ++.+||++.+.. ....++|.
T Consensus 184 ~m~~~Ir~a~~~Dl~ri~~L~~~tnqfn~~~~~~s~~~i~~~l~~~~~~~~~~~d~~gd~givG~~~~~~--~~~~~~I~ 261 (320)
T TIGR01686 184 ELSLNISKNDEQNVQRVEELLGRTNQFNATYTRLNQEDVAQHMQKEEIVTVSMSDRFGDSGIIGIFVFEK--KEGNLFID 261 (320)
T ss_pred CCEEEEEECChhhhHHHHHHHHhHHhhhccCccCCHHHHHHHhcCCCEEEEEEEecCCCCceEEEEEEEe--cCCcEEEE
Confidence 44467999999999999999877633222 23556677766552 344443 2 578999998764 34578899
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHhCCCeEe
Q 010815 409 AIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFREC 460 (500)
Q Consensus 409 ~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~------~~a~~fYek~GF~~~ 460 (500)
.++|+|.|||+|+|+.||++++++|++.|++.+.+.+ .+++.||+++||+..
T Consensus 262 ~l~vs~r~~grGig~~Ll~~l~~~a~~~G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 262 DLCMSCRALGRGVETRMLRWLFEQALDLGNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred EEEEcHhHhcCcHHHHHHHHHHHHHHHcCCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 9999999999999999999999999999999988865 478999999999864
No 99
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.18 E-value=8.2e-10 Score=116.84 Aligned_cols=183 Identities=16% Similarity=0.158 Sum_probs=133.2
Q ss_pred cHHHHHHHHHHHHHcCCeEEEEECChHHHHHHHHHcCCCce-----------------eeC-------------------
Q 010815 6 PWLVMVQDIAFLHHLGIRFVLVPGTHVQIDKLLSERGHEAK-----------------YLG------------------- 49 (500)
Q Consensus 6 ~~~~i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~~g~~~~-----------------~~~------------------- 49 (500)
.+..+++-++.....|.++|+|-.++.-++..|.++.-... ...
T Consensus 18 ~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~ 97 (447)
T COG0527 18 RILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAEFKKVL 97 (447)
T ss_pred HHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhhhhHHh
Confidence 56777888888788899999999998755555443332100 000
Q ss_pred ----CccCCCHHHHHHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceee
Q 010815 50 ----RYRITDSESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATG 125 (500)
Q Consensus 50 ----g~r~t~~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G 125 (500)
-+...++..++.+.-.-..++..+.++ +|+..|++ +..+.+.+..+.+....+ ..
T Consensus 98 ~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~--------~L~~~Gv~----A~~~~~~~~~i~t~~~~~---------~a 156 (447)
T COG0527 98 LGIALLGEVSPRERDELLSLGERLSAALLAA--------ALNALGVD----ARSLDGRQAGIATDSNHG---------NA 156 (447)
T ss_pred hhhhhccCCCHHHHHHHHhhchHHHHHHHHH--------HHHhCCCc----eEEEchHHceeeecCccc---------cc
Confidence 011225566666666666667777665 68999998 778887776666643211 22
Q ss_pred eEeeeCHHH-HHHHHhCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCc
Q 010815 126 EVKKVDVTR-MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGH 193 (500)
Q Consensus 126 ~v~~vd~~~-I~~lL~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~ 193 (500)
++...+.+. |..+++.+.|||+++. +.+++|+...+ -+|..|+.||..|+||.+-+.|||||+ | |+.+
T Consensus 157 ~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar 236 (447)
T COG0527 157 RILDEDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDAR 236 (447)
T ss_pred ccchhhhhhhHHHHhcCCcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcce
Confidence 344456666 9999999999999985 77778887766 479999999999999999999999998 4 4799
Q ss_pred cccccCHHHHHHHHHh
Q 010815 194 LIRFLTLQEADSLIRQ 209 (500)
Q Consensus 194 ~I~~i~~~e~~~~~~~ 209 (500)
+|+.|+.+|+.++..-
T Consensus 237 ~i~~isyeEa~ELA~~ 252 (447)
T COG0527 237 LLPEISYEEALELAYL 252 (447)
T ss_pred EcCccCHHHHHHHHHC
Confidence 9999999999999644
No 100
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.16 E-value=2.3e-10 Score=105.79 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=93.6
Q ss_pred ccccccccCCcccHH--HHHHHHHHHHHcCcCccCCHHHHHhhc----CcEEEEEE---CC----eEEEEEEEeeecCC-
Q 010815 337 DLYEGTRTAKVTDLS--GIKQIIQPLVESGALVRRTDEELLKAL----DSFYVVER---EG----QIIACAALFPFFKE- 402 (500)
Q Consensus 337 d~~~~iR~a~~~D~~--~I~~L~~~~~~~~~~~~~s~~~~~~~l----~~~~v~~~---dg----~IVG~~~l~~~~~~- 402 (500)
.....+|+++..|.+ .+..+....+... .+|+...+...+ ..+++... ++ +++|++........
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~ 86 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR--LPWSREYFEKDLTQAPELLLVAETGGLDGLLDGKVVGFLLVRVVDGRP 86 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC--CcchHHHHHHHHhhCcceeEEEEecccCCCcccceeEEEEEEEecCCc
Confidence 344578899999988 6666643322221 456666665544 34555554 33 59999999644332
Q ss_pred ---CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCC-CEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 403 ---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL-DMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 403 ---~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~-~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
..++|..++|+|+|||+|||++|++++++.+++.+. ..+.+.+ ..|+.||+|+||+.....
T Consensus 87 ~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~ 155 (177)
T COG0456 87 SADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRERGLADKIVLEVRESNEAAIGLYRKLGFEVVKIR 155 (177)
T ss_pred cccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhcCCCceEEEEEecCChHHHHHHHHcCCEEEeee
Confidence 278999999999999999999999999999999886 7888888 579999999999997654
No 101
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.15 E-value=1.4e-09 Score=110.67 Aligned_cols=78 Identities=17% Similarity=0.171 Sum_probs=66.2
Q ss_pred eeCHHHHHHHHhCCCcEEEcCcccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCcccccc
Q 010815 129 KVDVTRMRERLDGGCLVILSNLGYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFL 198 (500)
Q Consensus 129 ~vd~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i 198 (500)
..+.+.+..+++.|.|||+++..-+.+|...++ ++|.+|+.+|..|+|+.++++|||||++ ++.++|+.+
T Consensus 144 ~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~l 223 (327)
T TIGR02078 144 KRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYL 223 (327)
T ss_pred HhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEcccc
Confidence 457788999999999999998755666766665 7999999999999999999999999983 346789999
Q ss_pred CHHHHHHH
Q 010815 199 TLQEADSL 206 (500)
Q Consensus 199 ~~~e~~~~ 206 (500)
+.+|+.++
T Consensus 224 sy~Ea~el 231 (327)
T TIGR02078 224 SYEEIKIA 231 (327)
T ss_pred CHHHHHHH
Confidence 99888765
No 102
>PRK01346 hypothetical protein; Provisional
Probab=99.14 E-value=4.7e-10 Score=118.55 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=94.0
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc--CcEEEEEECCeEEEEEEEeeec-----C--CCeEEE
Q 010815 337 DLYEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL--DSFYVVEREGQIIACAALFPFF-----K--EKCGEV 407 (500)
Q Consensus 337 d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l--~~~~v~~~dg~IVG~~~l~~~~-----~--~~~~~I 407 (500)
.+.++||+++.+|++.+.+++...+.... .....+.+.... ...+++.++++++|++.+.+.. . -...+|
T Consensus 4 ~~~~~iR~~~~~D~~~i~~L~~~~f~~~~-~~~~~~~~~~~~~~~~~~va~~~~~lvg~~~~~~~~~~~~~~~~~~~~~i 82 (411)
T PRK01346 4 DMAITIRTATEEDWPAWFRAAATGFGDSP-SDEELEAWRALVEPDRTLGAFDGDEVVGTAGAFDLRLTVPGGAVLPAAGV 82 (411)
T ss_pred CCCceeecCCHHHHHHHHHHHHHHcCCCC-ChHHHHHHHHhcCcCCeEEEEECCEEEEEEEEeccccccCCCCccceeEE
Confidence 34567999999999999999876554322 111122222212 3567788899999999987532 1 146789
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEece
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSI 462 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~ 462 (500)
..++|+|+|||+|+|+.||+++++.++++|+..+.+.+ ...+||+|+||.....
T Consensus 83 ~~v~V~P~~RgrGig~~Ll~~~l~~a~~~g~~~~~L~~-~~~~~Y~r~Gf~~~~~ 136 (411)
T PRK01346 83 TAVTVAPTHRRRGLLTALMREQLRRIRERGEPVAALTA-SEGGIYGRFGYGPATY 136 (411)
T ss_pred EEEEEChhhcCCCHHHHHHHHHHHHHHHCCCcEEEEEC-CchhhHhhCCCeeccc
Confidence 99999999999999999999999999999998888876 3468999999998753
No 103
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.13 E-value=2.5e-09 Score=107.61 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=65.6
Q ss_pred CHHHHHHHHhC-CCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCcccccc
Q 010815 131 DVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRFL 198 (500)
Q Consensus 131 d~~~I~~lL~~-g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~i 198 (500)
..+.|...+.. +.|||+++. +.+..|++..+ ++|..|+.+|.+|+|+.++++|||||++ | +.++|+++
T Consensus 169 ~~~~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~l 248 (295)
T cd04259 169 ADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRL 248 (295)
T ss_pred hHHHHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEecee
Confidence 45677777765 679999986 77778887755 6899999999999999999999999983 3 57999999
Q ss_pred CHHHHHHHHH
Q 010815 199 TLQEADSLIR 208 (500)
Q Consensus 199 ~~~e~~~~~~ 208 (500)
+.+|+.++..
T Consensus 249 s~~ea~~l~~ 258 (295)
T cd04259 249 DYDEAQEIAT 258 (295)
T ss_pred CHHHHHHHHH
Confidence 9999999864
No 104
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.12 E-value=1.9e-09 Score=100.43 Aligned_cols=125 Identities=11% Similarity=0.101 Sum_probs=93.5
Q ss_pred cccccccCCcccHHHHHHHHHHHHH---c--CcC-ccCCHHHHHhhcC-----------cEEEEEECCeEEEEEEEeeec
Q 010815 338 LYEGTRTAKVTDLSGIKQIIQPLVE---S--GAL-VRRTDEELLKALD-----------SFYVVEREGQIIACAALFPFF 400 (500)
Q Consensus 338 ~~~~iR~a~~~D~~~I~~L~~~~~~---~--~~~-~~~s~~~~~~~l~-----------~~~v~~~dg~IVG~~~l~~~~ 400 (500)
+.+.+|+++.+|++.+++++.+... . ..+ ...+.++..+++. .++++..++++||++.+....
T Consensus 9 ~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l~~~~ 88 (179)
T PRK10151 9 ESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSFNRIE 88 (179)
T ss_pred CcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEEEeec
Confidence 4467999999999999999843211 1 111 1234444433331 256777789999999987543
Q ss_pred -CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 401 -KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 401 -~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
....+++ .+.++|+|||+|+|+.++..+++++.+ .+++++.+.+ .++.++|+|+||+..+..
T Consensus 89 ~~~~~~~i-g~~i~~~~~g~G~~tea~~~l~~~~~~~~~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~ 156 (179)
T PRK10151 89 PLNKTAYI-GYWLDESHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPASNQVALRNGFTLEGCL 156 (179)
T ss_pred cCCCceEE-EEEEChhhcCCcHHHHHHHHHHHHHHhhCCccEEEEEEcCCCHHHHHHHHHCCCEEEeEe
Confidence 2346777 578999999999999999999999976 5799988877 579999999999998765
No 105
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.10 E-value=1.4e-09 Score=102.00 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=91.1
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCc--cC-CHHH----HHhhc----CcEEEEEECCeEEEEEEEeeecC-CCeEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALV--RR-TDEE----LLKAL----DSFYVVEREGQIIACAALFPFFK-EKCGEV 407 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~--~~-s~~~----~~~~l----~~~~v~~~dg~IVG~~~l~~~~~-~~~~~I 407 (500)
+.+|+++.+|++.+.++..+.....+.. +. .... +...+ ...|++..++++||++.+..... ...+++
T Consensus 7 l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~~~~~~ 86 (186)
T PRK15130 7 VKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEF 86 (186)
T ss_pred eEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCCCeEEE
Confidence 5799999999999999976543211111 11 1111 11111 24677778999999999875432 345666
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
.++|+|+|||+|+|+.+++.+++++.+ .++.+|.+.+ .++++||+|+||+..+..
T Consensus 87 -~~~v~~~~~g~G~g~~l~~~l~~~~~~~~~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~ 146 (186)
T PRK15130 87 -QIIISPEYQGKGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFEVEGEL 146 (186)
T ss_pred -EEEECHHHcCCCHHHHHHHHHHHHHhhcCCceEEEEEEccCCHHHHHHHHHCCCEEEEEE
Confidence 699999999999999999999999975 6899998877 579999999999998653
No 106
>PRK10562 putative acetyltransferase; Provisional
Probab=99.10 E-value=1.7e-09 Score=97.29 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=80.1
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCc--c--C--CHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEE
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALV--R--R--TDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIG 411 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~--~--~--s~~~~~~~l---~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~ 411 (500)
.||+++.+|++.+.+++........+. . + ....+.+.. ..++++..++++||++.+... ..++.++
T Consensus 1 ~ir~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~-----~~i~~~~ 75 (145)
T PRK10562 1 MIREYQPSDLPAILQLWLESTIWAHPFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEG-----RFVGALF 75 (145)
T ss_pred CcccccchhhHHHHHHHHHhccccCCCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeec-----cEEEEEE
Confidence 389999999999999986542211110 0 0 011111111 245677788999999988632 3577899
Q ss_pred EccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 412 VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 412 V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
|+|+|||+|+|+.|++++++.+ ..+.+.+ ..+.+||+|+||+..+...
T Consensus 76 v~~~~rg~G~g~~ll~~~~~~~-----~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~~ 127 (145)
T PRK10562 76 VAPKAVRRGIGKALMQHVQQRY-----PHLSLEVYQKNQRAVNFYHAQGFRIVDSAW 127 (145)
T ss_pred ECHHHcCCCHHHHHHHHHHhhC-----CeEEEEEEcCChHHHHHHHHCCCEEccccc
Confidence 9999999999999999998754 3344444 5789999999999988653
No 107
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.10 E-value=5.8e-10 Score=96.57 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=94.9
Q ss_pred cccccCCcccHHH-HHHHHHHHHHcCcCccCCHHHHHhhc-------CcE--EEEEE--CCeEEEEEEEeee-----cCC
Q 010815 340 EGTRTAKVTDLSG-IKQIIQPLVESGALVRRTDEELLKAL-------DSF--YVVER--EGQIIACAALFPF-----FKE 402 (500)
Q Consensus 340 ~~iR~a~~~D~~~-I~~L~~~~~~~~~~~~~s~~~~~~~l-------~~~--~v~~~--dg~IVG~~~l~~~-----~~~ 402 (500)
..+|++..+|+.. ..+++.++-..+.. +++++...+ ..+ .|+++ .++|+|.+.+... ...
T Consensus 7 ~~lR~L~~~D~~kGf~elL~qLT~vG~v---t~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfIh~~g 83 (150)
T KOG3396|consen 7 FKLRPLEEDDYGKGFIELLKQLTSVGVV---TREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFIHGCG 83 (150)
T ss_pred eEEeecccccccchHHHHHHHHhhcccc---CHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhhhccc
Confidence 4799999999986 88888777666543 444444433 223 33443 3789999998642 234
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEece
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 462 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~ 462 (500)
..++|..++|+++|||+++|+.|+..+...+++.||-.+.|++ +...+||+|+||...+.
T Consensus 84 ~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~k~lgcYKi~LdC~~~nv~FYeKcG~s~~~~ 144 (150)
T KOG3396|consen 84 SRGHIEDVVVDSEYRGKQLGKLLVETLVDLAKSLGCYKIILDCDPKNVKFYEKCGYSNAGN 144 (150)
T ss_pred ccCceeEEEeChhhhhhHHhHHHHHHHHHHHHhcCcEEEEEecchhhhhHHHHcCccccch
Confidence 6689999999999999999999999999999999999999999 77899999999998653
No 108
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.08 E-value=1.7e-09 Score=97.82 Aligned_cols=121 Identities=18% Similarity=0.182 Sum_probs=90.8
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcC---ccCCHHHHHhhc--------CcEEEEEECCeEEEEEEEeeecC-CCeEEEE
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGAL---VRRTDEELLKAL--------DSFYVVEREGQIIACAALFPFFK-EKCGEVA 408 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~---~~~s~~~~~~~l--------~~~~v~~~dg~IVG~~~l~~~~~-~~~~~I~ 408 (500)
.+|+++++|.+.+.++..+.....+. ...+.+....++ ..++++..++++||++.+..... ....+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~~~~~g 81 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHKSAFWG 81 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhCeEEEE
Confidence 48999999999999998654332221 113333322221 24677788999999999975432 3456664
Q ss_pred EEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 409 AIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 409 ~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
+++.|.+| +|+|+.++..+++++.+ .++..+.+.+ ..+++||+|+||+..+..
T Consensus 82 -~~~~~~~~-~G~g~~~~~~~~~~a~~~~~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~ 139 (156)
T TIGR03585 82 -IYANPFCK-PGVGSVLEEAALEYAFEHLGLHKLSLEVLEFNNKALKLYEKFGFEREGVF 139 (156)
T ss_pred -EEeChhhh-cCchHHHHHHHHHHHHhhCCeeEEEEEEeccCHHHHHHHHHcCCeEeeee
Confidence 55999999 99999999999999985 6999998877 579999999999998754
No 109
>PHA01807 hypothetical protein
Probab=99.08 E-value=2.4e-09 Score=97.54 Aligned_cols=117 Identities=20% Similarity=0.186 Sum_probs=83.8
Q ss_pred cCCcccHHHHHHHHHHHHHcCcCc---cCCHH----HHHhhc----CcEEEEEECCeEEEEEEEeeecCCCeEE---EEE
Q 010815 344 TAKVTDLSGIKQIIQPLVESGALV---RRTDE----ELLKAL----DSFYVVEREGQIIACAALFPFFKEKCGE---VAA 409 (500)
Q Consensus 344 ~a~~~D~~~I~~L~~~~~~~~~~~---~~s~~----~~~~~l----~~~~v~~~dg~IVG~~~l~~~~~~~~~~---I~~ 409 (500)
.++.+|++.+..+......+. +. ..+.+ .+...+ ...++++++++++|++.+.......... +..
T Consensus 8 ~~~~~d~~~~~~l~l~~l~e~-p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~~i~~l~~ 86 (153)
T PHA01807 8 HAKAGTPSELQGLCWLAIQEL-EEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVGPCLGVQW 86 (153)
T ss_pred hhhhCCHHHHHHHHHHHHHhC-ccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCcceeeecccee
Confidence 466788888888876654432 21 11112 222211 2356677899999999987544332333 445
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 410 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 410 l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
++|+|+|||+|+|+.||+.++++|++.|+..+.+.+ .++++||++ |++.+.+
T Consensus 87 lYV~pe~RG~GiG~~Ll~~~~~~Ar~~G~~~l~l~v~~~n~~a~~~y~~--~~~~~~~ 142 (153)
T PHA01807 87 QYVLPEYRNAGVAREFLRELIRLAGEGNLPLIAFSHREGEGRYTIHYRR--VKPYGQE 142 (153)
T ss_pred EEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHHh--cCccCCc
Confidence 899999999999999999999999999999999888 579999997 6666544
No 110
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.07 E-value=3.2e-09 Score=106.72 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=89.9
Q ss_pred cccccCCc-ccHHHHHHHHHHHHHcCc-CccCCHHHHHhhc-------CcEEEEEE--CCeEEEEEEEeeec-CCCeEEE
Q 010815 340 EGTRTAKV-TDLSGIKQIIQPLVESGA-LVRRTDEELLKAL-------DSFYVVER--EGQIIACAALFPFF-KEKCGEV 407 (500)
Q Consensus 340 ~~iR~a~~-~D~~~I~~L~~~~~~~~~-~~~~s~~~~~~~l-------~~~~v~~~--dg~IVG~~~l~~~~-~~~~~~I 407 (500)
+++|+++. .|.+.+.++....+.... ...++.+.+.... ..++++.+ ++++||++.+.... .....++
T Consensus 150 ~~~r~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~~~~~i 229 (292)
T TIGR03448 150 VTVRAYVGAPDDAEWLRVNNAAFAWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEPALGEV 229 (292)
T ss_pred eEeeccCCCcchHHHHHHHHHHhhCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCCceeEE
Confidence 46788764 588888888766554322 1345555544321 23555655 68999997655332 2235677
Q ss_pred EEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 408 AAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 408 ~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
..++|+|+|||+|+|+.|+.++++++++.|+..+.+.+ ..+.+||+|+||+....
T Consensus 230 ~~~~V~p~~rg~GiG~~ll~~~~~~~~~~g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~ 288 (292)
T TIGR03448 230 YVVGVDPAAQGRGLGDALTLIGLHHLAARGLPAVMLYVEADNEAAVRTYEKLGFTVAEV 288 (292)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEeCCCHHHHHHHHHcCCEEccc
Confidence 77899999999999999999999999999999988877 47899999999998654
No 111
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.05 E-value=7.1e-09 Score=104.41 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=79.3
Q ss_pred hhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEe-eeCHHHHHHHHhC-CCcEEEcCc-ccCCCCCeeec
Q 010815 85 NIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK-KVDVTRMRERLDG-GCLVILSNL-GYSSSGEVLNC 161 (500)
Q Consensus 85 ~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~-~vd~~~I~~lL~~-g~IPVi~~~-~~~~~g~~~~i 161 (500)
.|++.|++ +..+.+.+ .+++.. +++. ..+. ....+.|+.++.. +.|||+++. +.+..|....+
T Consensus 135 ~L~~~Gi~----a~~ld~~~-~i~t~~--------~~~~-a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ttl 200 (294)
T cd04257 135 LLNQQGLD----AAWIDARE-LIVTDG--------GYLN-AVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTL 200 (294)
T ss_pred HHHhCCCC----eEEEchHH-eeEecC--------CCCc-eEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCEEEC
Confidence 68888988 66666554 222211 1111 1222 1235678887776 999999986 55667877655
Q ss_pred C---HHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHHH
Q 010815 162 N---TYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSLI 207 (500)
Q Consensus 162 ~---~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~~ 207 (500)
. +|.+|+.+|..|+|+.++++|||||++ |++++|+.|+.+|+.++.
T Consensus 201 GRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~ 256 (294)
T cd04257 201 GRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELS 256 (294)
T ss_pred CCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHH
Confidence 3 799999999999999999999999983 457899999999998885
No 112
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.05 E-value=8.1e-10 Score=111.15 Aligned_cols=76 Identities=26% Similarity=0.507 Sum_probs=67.8
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCe
Q 010815 380 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFR 458 (500)
Q Consensus 380 ~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~ 458 (500)
.+++.++++++|||+.+.. .+|..++|+|+|||+|+|+.|+++++++++++|++.+++.+ +.+.+||+|+||+
T Consensus 7 ~~~v~~~~~~iVG~~~l~~------~~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~~~g~~~i~L~t~~~~~~fYek~GF~ 80 (297)
T cd02169 7 TVGIFDDAGELIATGSIAG------NVLKCVAVCPKYQGEGLALKIVSELINKAYEEGIFHLFLFTKPKNAKFFRGLGFK 80 (297)
T ss_pred EEEEEEECCEEEEEEEecc------CEEEEEEECHHHcCCCHHHHHHHHHHHHHHHCCCCEEEEEEcccHHHHHHHCCCE
Confidence 3566677899999998862 25889999999999999999999999999999999999998 4578999999999
Q ss_pred Eec
Q 010815 459 ECS 461 (500)
Q Consensus 459 ~~~ 461 (500)
..+
T Consensus 81 ~~~ 83 (297)
T cd02169 81 ELA 83 (297)
T ss_pred Eec
Confidence 887
No 113
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.02 E-value=8.3e-09 Score=103.71 Aligned_cols=114 Identities=15% Similarity=0.189 Sum_probs=84.7
Q ss_pred ccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc-------CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccC
Q 010815 343 RTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL-------DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 415 (500)
Q Consensus 343 R~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l-------~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~ 415 (500)
.+++++|+++|.+|+..........+++.+.. ..+ ...+++.+++++||++.+..... ...++..++|+|+
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~-~~~~~~~l~V~p~ 81 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATAVDGVAPVSEQVL-RGLREPGAGHTRHLVAVDSDPIVGYANLVPARG-TDPAMAELVVHPA 81 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCCCHHHH-hhccccCCCCceEEEEEECCEEEEEEEEEcCCC-CcceEEEEEECHh
Confidence 46788999999999886555433334554433 322 23567778899999999875432 3467889999999
Q ss_pred CcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 416 CRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 416 yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
|||+|+|+.|++++++.+. ..+.+.+ ..+++||+++||+....
T Consensus 82 ~rg~GiG~~Ll~~~~~~~~----~~~~~~~~~~n~~a~~fy~~~Gf~~~~~ 128 (292)
T TIGR03448 82 HRRRGIGRALIRALLAKGG----GRLRVWAHGDLPAARALASRLGLVPTRE 128 (292)
T ss_pred hcCCCHHHHHHHHHHHhcc----CceEEEEcCCCHHHHHHHHHCCCEEccE
Confidence 9999999999999998874 2344444 47899999999998754
No 114
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.01 E-value=9.5e-09 Score=103.46 Aligned_cols=78 Identities=19% Similarity=0.183 Sum_probs=66.5
Q ss_pred HHHHHHHHhC-CCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccC
Q 010815 132 VTRMRERLDG-GCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLT 199 (500)
Q Consensus 132 ~~~I~~lL~~-g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~ 199 (500)
.+.++.++.. +.|||+.+. +.+..|+...+ ++|..|+.+|..|+|+.++++|||||++ +++++|++++
T Consensus 168 ~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls 247 (293)
T cd04243 168 KERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELS 247 (293)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeC
Confidence 4578888887 999999986 56677888766 4799999999999999999999999983 3579999999
Q ss_pred HHHHHHHHHh
Q 010815 200 LQEADSLIRQ 209 (500)
Q Consensus 200 ~~e~~~~~~~ 209 (500)
.+|+.++...
T Consensus 248 ~~ea~~l~~~ 257 (293)
T cd04243 248 YDEAMELAYF 257 (293)
T ss_pred HHHHHHHHhC
Confidence 9999998643
No 115
>PRK13688 hypothetical protein; Provisional
Probab=98.99 E-value=2.6e-09 Score=97.69 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=76.4
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeec---------CCCeEEEEEEE
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFF---------KEKCGEVAAIG 411 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~---------~~~~~~I~~l~ 411 (500)
.||++..+|++++.++....+.. ..-..++++.++++++|++.+.... .+..++|..++
T Consensus 19 ~~~~~~~~dl~~l~~l~~~~f~~------------~~~~~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~ 86 (156)
T PRK13688 19 KFREFGNQELSMLEELQANIIEN------------DSESPFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLE 86 (156)
T ss_pred HHHHhcHHHHHHHHhhhhhEeec------------CCCCCEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEE
Confidence 46788888888888885443321 1123567777889999998774321 23567899999
Q ss_pred EccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 412 VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 412 V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
|+|+|||||+|++|++++. +.++. +.+.. ..+.+||+|+||+..+..
T Consensus 87 V~p~~rgkGiG~~Ll~~a~----~~~~~-~~~~~~~~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 87 VLPKYQNRGYGEMLVDFAK----SFQLP-IKTIARNKSKDFWLKLGFTPVEYK 134 (156)
T ss_pred ECHHHcCCCHHHHHHHHHH----HhCCe-EEEEeccchHHHHHhCCCEEeEEe
Confidence 9999999999999998654 33443 33322 468999999999998766
No 116
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=98.98 E-value=7.3e-09 Score=91.88 Aligned_cols=118 Identities=20% Similarity=0.283 Sum_probs=85.4
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCc---C-ccCCHHHHHhhc--------C---cEEEEEE-C-CeEEEEEEEeee-cC
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGA---L-VRRTDEELLKAL--------D---SFYVVER-E-GQIIACAALFPF-FK 401 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~---~-~~~s~~~~~~~l--------~---~~~v~~~-d-g~IVG~~~l~~~-~~ 401 (500)
++||+++++|++.+.++........+ . ...+.+....++ . .+|++.+ + +++||++.+... ..
T Consensus 2 l~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~~ 81 (142)
T PF13302_consen 2 LTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDKN 81 (142)
T ss_dssp EEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEETT
T ss_pred EEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeecccC
Confidence 46899999999999999853222222 1 112444433332 1 1344443 3 579999999433 45
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEc----HHHHHHHHhCCCe
Q 010815 402 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT----TRTADWFKSRGFR 458 (500)
Q Consensus 402 ~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a-~~~g~~~I~l~~----~~a~~fYek~GF~ 458 (500)
...++++ +.+.|+|||+|+|+.++..+++++ ++.++.++.+.+ ..+.++++|+||+
T Consensus 82 ~~~~eig-~~i~~~~~g~G~~~~~~~~~~~~~~~~~~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 82 NNWAEIG-YWIGPDYRGKGYGTEALKLLLDWAFEELGLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTEEEEE-EEEEGGGTTSSHHHHHHHHHHHHHHHTSTSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCccccc-cchhHHHHhhhHHHHHHHHHHHHHHhcCCcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 6788884 899999999999999999999999 467999999988 5799999999996
No 117
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=98.97 E-value=9.7e-09 Score=96.93 Aligned_cols=123 Identities=11% Similarity=0.052 Sum_probs=88.3
Q ss_pred cccccCCcccHHHHHHHHHHHHH--cCcCcc-----CCHHH-------HHhhc----CcEEEEE--ECCeEEEEEEEeee
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVE--SGALVR-----RTDEE-------LLKAL----DSFYVVE--REGQIIACAALFPF 399 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~--~~~~~~-----~s~~~-------~~~~l----~~~~v~~--~dg~IVG~~~l~~~ 399 (500)
+.||+++.+|.+.+++++.+... ..+... .+.+. +.... ...|++. .++++||++.+...
T Consensus 18 l~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~l~~~ 97 (194)
T PRK10809 18 LVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEIIGVANFSNV 97 (194)
T ss_pred EEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeEEEEEEEEee
Confidence 57999999999999999875221 111100 00111 11111 1234443 36799999999754
Q ss_pred cCC--CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 400 FKE--KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 400 ~~~--~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
... ..+++ .+.|+|+|||+|+|+.+++.+++++.+ .|+++|.+.+ .+|+++|+|+||+..+..
T Consensus 98 ~~~~~~~~ei-g~~i~~~~~G~G~~~ea~~~ll~~~~~~l~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 98 VRGSFHACYL-GYSLGQKWQGQGLMFEALQAAIRYMQRQQHMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred cCCCeeeEEE-EEEECHHHcCCCHHHHHHHHHHHHHHhcCCceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 321 34566 688999999999999999999999987 5999999988 589999999999987643
No 118
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=98.95 E-value=1.2e-08 Score=104.19 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=71.8
Q ss_pred hhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHh
Q 010815 376 KALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKS 454 (500)
Q Consensus 376 ~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek 454 (500)
...+.++++.+++++|||+.+.. ..|.+++|+|+|||+|+|+.|+.++++++++.|+..+++.| +...+||++
T Consensus 28 ~~~d~~vv~~~~~~lVg~g~l~g------~~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~G~~~l~l~Tk~~~~~fy~k 101 (332)
T TIGR00124 28 APLEIFIAVYEDEEIIGCGGIAG------NVIKCVAIDESLRGEGLALQLMTELENLAYELGRFHLFIFTKPEYAALFEY 101 (332)
T ss_pred CCCCEEEEEEECCEEEEEEEEec------CEEEEEEEcHHHcCCCHHHHHHHHHHHHHHHcCCCEEEEEECchHHHHHHH
Confidence 34466788888999999999852 24889999999999999999999999999999999999999 456889999
Q ss_pred CCCeEecee
Q 010815 455 RGFRECSIE 463 (500)
Q Consensus 455 ~GF~~~~~~ 463 (500)
+||......
T Consensus 102 lGF~~i~~~ 110 (332)
T TIGR00124 102 CGFKTLAEA 110 (332)
T ss_pred cCCEEeeee
Confidence 999998754
No 119
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=98.86 E-value=7.9e-08 Score=96.44 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=96.0
Q ss_pred HHHHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHHH
Q 010815 58 SLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMRE 137 (500)
Q Consensus 58 ~l~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~~ 137 (500)
..+.+...-..++..+.+. .|++.|++ +.-+++.+-++++.... + ...+.....+.+..
T Consensus 111 ~~d~i~s~GE~lSa~ll~~--------~L~~~Gi~----a~~ld~~~~~i~t~~~~--------~-~a~~~~~~~~~~~~ 169 (288)
T cd04245 111 LLDALKARGEYLNAQLMAA--------YLNYQGID----ARYVIPKDAGLVVTDEP--------G-NAQILPESYQKIKK 169 (288)
T ss_pred HHHHHHHHhHHHHHHHHHH--------HHHHCCCC----eEEEcHHHCceeecCCc--------c-ccccchhhHHHHHH
Confidence 3343344444556666664 68889988 66666555444432211 1 11233346788999
Q ss_pred HHhCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHHH
Q 010815 138 RLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSL 206 (500)
Q Consensus 138 lL~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~~ 206 (500)
+++.+-|||+++. +.+..|+...+ .+|..|+.+|.+|+|+.+.+.|||||+ | |+.+.|++++.+|+.++
T Consensus 170 ~~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~el 249 (288)
T cd04245 170 LRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMREL 249 (288)
T ss_pred HHhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHH
Confidence 9999999999985 77788999988 899999999999999999999999998 3 46889999999999998
Q ss_pred HH
Q 010815 207 IR 208 (500)
Q Consensus 207 ~~ 208 (500)
..
T Consensus 250 a~ 251 (288)
T cd04245 250 SY 251 (288)
T ss_pred HH
Confidence 64
No 120
>PRK09084 aspartate kinase III; Validated
Probab=98.84 E-value=6.9e-08 Score=103.05 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=87.3
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeE-----eeeCHHH
Q 010815 60 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-----KKVDVTR 134 (500)
Q Consensus 60 ~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v-----~~vd~~~ 134 (500)
+.+...-..++..+.+. +|++.|++ +..+.+.+- +++... ++. .++ .....+.
T Consensus 110 d~i~s~GE~lSa~l~~~--------~L~~~Gi~----a~~l~~~~~-i~t~~~--------~~~-~~~~~~~~~~~~~~~ 167 (448)
T PRK09084 110 DELVSHGELMSTLLFVE--------LLRERGVQ----AEWFDVRKV-MRTDDR--------FGR-AEPDVAALAELAQEQ 167 (448)
T ss_pred hhhhhHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHe-EEecCC--------CCc-ccccHHHHHHHHHHH
Confidence 33333344456555554 68899998 666665442 232111 110 111 1111245
Q ss_pred HHHHHhCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHH
Q 010815 135 MRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEA 203 (500)
Q Consensus 135 I~~lL~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~ 203 (500)
+..+++.+ |||+++. +.+..|....+ .+|..|+.+|..|+|+.+++.|||||+ | |+.++|++++.+|+
T Consensus 168 ~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea 246 (448)
T PRK09084 168 LLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEA 246 (448)
T ss_pred HHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHH
Confidence 66677888 9999885 66778888766 899999999999999999999999998 3 45889999999999
Q ss_pred HHHHH
Q 010815 204 DSLIR 208 (500)
Q Consensus 204 ~~~~~ 208 (500)
.++..
T Consensus 247 ~ela~ 251 (448)
T PRK09084 247 AEMAT 251 (448)
T ss_pred HHHHh
Confidence 98853
No 121
>PRK05925 aspartate kinase; Provisional
Probab=98.82 E-value=4.9e-08 Score=103.56 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=63.2
Q ss_pred HHHHHHHHhCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCH
Q 010815 132 VTRMRERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTL 200 (500)
Q Consensus 132 ~~~I~~lL~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~ 200 (500)
....+..++.+.|||+++. +.++.|+...+ ++|..|+.+|..|+||.++++|||||++ ++.++|++++.
T Consensus 155 ~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~ 234 (440)
T PRK05925 155 TAWHELALQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSF 234 (440)
T ss_pred HHHHHhhccCCcEEEecCcceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECH
Confidence 3334445677889999986 77788886644 7999999999999999999999999983 35789999999
Q ss_pred HHHHHHHH
Q 010815 201 QEADSLIR 208 (500)
Q Consensus 201 ~e~~~~~~ 208 (500)
+|+.++..
T Consensus 235 ~ea~ela~ 242 (440)
T PRK05925 235 EEMQNLAS 242 (440)
T ss_pred HHHHHHHh
Confidence 99888753
No 122
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.78 E-value=5.5e-08 Score=111.76 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=65.6
Q ss_pred eCHHHHHHHHhCC-CcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCcccC---C----CCccccc
Q 010815 130 VDVTRMRERLDGG-CLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPILD---E----SGHLIRF 197 (500)
Q Consensus 130 vd~~~I~~lL~~g-~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~----~g~~I~~ 197 (500)
.+...++.+++.+ .|||+.+. +.+..|+...+ ++|..|+.+|.+|+||+++++|||||++ | +.++|++
T Consensus 177 ~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ 256 (861)
T PRK08961 177 SDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTR 256 (861)
T ss_pred hHHHHHHHHhccCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecc
Confidence 3566778888766 49999885 66777876654 7899999999999999999999999983 3 5689999
Q ss_pred cCHHHHHHHHH
Q 010815 198 LTLQEADSLIR 208 (500)
Q Consensus 198 i~~~e~~~~~~ 208 (500)
++.+|+.++..
T Consensus 257 ls~~e~~el~~ 267 (861)
T PRK08961 257 LDYDEAQEIAT 267 (861)
T ss_pred cCHHHHHHHHH
Confidence 99999998864
No 123
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=98.78 E-value=1.1e-07 Score=96.11 Aligned_cols=69 Identities=22% Similarity=0.264 Sum_probs=58.9
Q ss_pred CCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHHHHHh
Q 010815 141 GGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIRQ 209 (500)
Q Consensus 141 ~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~~~~~ 209 (500)
.+.|||+++. +.+..|+...+ .+|..|+.+|..|+|+.+++.|||+|+ | +++++|+.|+.+|+.++...
T Consensus 189 ~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~ 268 (306)
T cd04247 189 ENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYY 268 (306)
T ss_pred CCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhC
Confidence 5679999985 66677887766 489999999999999999999999998 3 35789999999999998643
No 124
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.74 E-value=2.2e-07 Score=84.66 Aligned_cols=113 Identities=14% Similarity=0.195 Sum_probs=84.5
Q ss_pred hCCCcEEEcCcc----cCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccC---CCCccccccCHHHHHHHHHhhhh
Q 010815 140 DGGCLVILSNLG----YSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILD---ESGHLIRFLTLQEADSLIRQRVK 212 (500)
Q Consensus 140 ~~g~IPVi~~~~----~~~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~---~~g~~I~~i~~~e~~~~~~~~~~ 212 (500)
..+.+||+-|-. +|+--..--|-+|.++..+|+++++..+|+.|||||+. +++++|++|+..|++.. ...+
T Consensus 91 ~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~kLv~eI~A~dl~~~-~t~v- 168 (212)
T COG2054 91 KPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPKGKLVREIRASDLKTG-ETSV- 168 (212)
T ss_pred CcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCcchhhhhhhHhhcccC-cccc-
Confidence 445667776532 23444566788999999999999999999999999984 55789999987776541 0111
Q ss_pred hhhHHHhhhhhhhcccccccCCCCCCccccccCCCCccchhhhhcccCCCccCCCCCCccccccccccccchhhhcccch
Q 010815 213 QSEIAANYVKAVAEEDITCFGHSDSIGSVYSSQNGKTFSERRIATFNNGVGFDNGNGLWSSEQGFAIGGQERLSRLNGYL 292 (500)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 292 (500)
+ + +.
T Consensus 169 -----------------------------------------------------D--~---------------------~~ 172 (212)
T COG2054 169 -----------------------------------------------------D--P---------------------YL 172 (212)
T ss_pred -----------------------------------------------------c--c---------------------hh
Confidence 1 1 66
Q ss_pred HHHHHHHHHHHcCCCeEEeeccccCceeeehhhhcCCCcceeec
Q 010815 293 SELAAAAFVCRRGVQRVHLLDGTIGGVLLLELFKRDGMGTMVAS 336 (500)
Q Consensus 293 ~~~~~~~~~~~~g~~~~~~~~~~~~~~ll~~l~~~~~~GT~i~~ 336 (500)
|+|. .+.+.. ..++||..|++++..+-..+..||+|.+
T Consensus 173 P~Ll-----~k~~m~-~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 173 PKLL-----VKYKMN-CRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred hHHH-----HHcCCc-eEEECCCCHHHHHHHHhccccceEEEeC
Confidence 7765 566666 7899999999998888777889999976
No 125
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=98.74 E-value=6.5e-09 Score=92.32 Aligned_cols=124 Identities=18% Similarity=0.199 Sum_probs=89.4
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEE-ECCeEEEEEEEeeec----CCCeEEEEEEEEcc
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVE-REGQIIACAALFPFF----KEKCGEVAAIGVSP 414 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~-~dg~IVG~~~l~~~~----~~~~~~I~~l~V~p 414 (500)
+.||.++.+|+-.+..+-..-..+.+......-....|.+..||++ .+|+|||++....+. ....++|..++|..
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpENyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~~hGhItSlaV~r 81 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPENYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEPPHGHITSLAVKR 81 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcHHHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCCCCCeeEEeeehh
Confidence 3588898888776666521111111111222233344556778887 579999999887554 34578999999999
Q ss_pred CCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHH-hCCCeEecee
Q 010815 415 ECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFK-SRGFRECSIE 463 (500)
Q Consensus 415 ~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYe-k~GF~~~~~~ 463 (500)
.||+.|+|++||........+ .+.+.|.+.+ -.|+.+|+ .+||+..+.+
T Consensus 82 s~RrlGla~kLm~qa~rAm~E~~~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve 136 (193)
T KOG3235|consen 82 SYRRLGLAQKLMNQASRAMVEVYEAKYVSLHVRKSNRAALHLYKNTLGFVVCEVE 136 (193)
T ss_pred hHHHhhHHHHHHHHHHHHHHHhhcceEEEEeeecccHHHHHhhhhccceEEeecc
Confidence 999999999999998877765 3677888888 35899998 6999998765
No 126
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.74 E-value=5.3e-08 Score=85.69 Aligned_cols=92 Identities=23% Similarity=0.307 Sum_probs=75.4
Q ss_pred hhcCcEEEEEECCeEEEEEEEeeecC-CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC-CCEEEEEc-HHHHHHH
Q 010815 376 KALDSFYVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTADWF 452 (500)
Q Consensus 376 ~~l~~~~v~~~dg~IVG~~~l~~~~~-~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g-~~~I~l~~-~~a~~fY 452 (500)
....+++..+.++++++|+.+.+... .....|++++|+|++||+|+|++||..+++.+.+.. -+.+.+.. ...+.||
T Consensus 47 ~~~~Hl~~~~~~g~LvAyaRLl~~~~~~~~~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p~~~v~l~AQahLq~fY 126 (155)
T COG2153 47 GDTRHLLGWTPDGELVAYARLLPPGAEYEEVSIGRVIVSPAARGQGLGQQLMEKALETAGREWPDKPVYLGAQAHLQDFY 126 (155)
T ss_pred cccceEEEEcCCCeEEEEEecCCCCCCcCceeeeeEEECHhhhccchhHHHHHHHHHHHHhhCCCCCeEEehHHHHHHHH
Confidence 34467888888999999999986432 233679999999999999999999999999998764 45677777 4579999
Q ss_pred HhCCCeEeceeccch
Q 010815 453 KSRGFRECSIEMIPE 467 (500)
Q Consensus 453 ek~GF~~~~~~~lp~ 467 (500)
.++||+.++..++.+
T Consensus 127 a~~GFv~~~e~yled 141 (155)
T COG2153 127 ASFGFVRVGEEYLED 141 (155)
T ss_pred HHhCcEEcCchhhcC
Confidence 999999998776554
No 127
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=98.72 E-value=5.2e-07 Score=90.73 Aligned_cols=70 Identities=20% Similarity=0.232 Sum_probs=59.3
Q ss_pred hCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHHHHH
Q 010815 140 DGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLIR 208 (500)
Q Consensus 140 ~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~~~~ 208 (500)
..+.|||+++. +.+..|++..+ ++|..|+.+|..|+|+.+++.|||+|+ | |++++|+.++.+|+.++..
T Consensus 176 ~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~ 255 (292)
T cd04258 176 LAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMAT 255 (292)
T ss_pred hcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHH
Confidence 45689999885 66677887754 789999999999999999999999998 3 3589999999999999864
Q ss_pred h
Q 010815 209 Q 209 (500)
Q Consensus 209 ~ 209 (500)
.
T Consensus 256 ~ 256 (292)
T cd04258 256 F 256 (292)
T ss_pred C
Confidence 3
No 128
>PRK09034 aspartate kinase; Reviewed
Probab=98.70 E-value=7.5e-07 Score=95.32 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHHH
Q 010815 57 ESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRMR 136 (500)
Q Consensus 57 ~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I~ 136 (500)
..++.+...-..++..+.+. .|++.|++ +.-+.+.+-++++... ++. ..+.....+.+.
T Consensus 110 ~~~d~l~s~GE~~S~~l~a~--------~L~~~g~~----a~~~~~~~~~~~t~~~--------~~~-a~i~~~~~~~~~ 168 (454)
T PRK09034 110 RLLDAFKARGEDLNAKLIAA--------YLNYEGIP----ARYVDPKEAGIIVTDE--------PGN-AQVLPESYDNLK 168 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHhCCCC----cEEEchHHceEEecCC--------cCc-eeEcHhhHHHHH
Confidence 34444444444556666664 68888988 5566655544443211 111 123334677888
Q ss_pred HHHhCCCcEEEcCc-ccCCCCCeeec---CHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHH
Q 010815 137 ERLDGGCLVILSNL-GYSSSGEVLNC---NTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 205 (500)
Q Consensus 137 ~lL~~g~IPVi~~~-~~~~~g~~~~i---~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~ 205 (500)
.++..+-|||+++. +.+..|+...+ .+|..|+.+|.+|+|+.+.+.|||||+ | |+.+.++.++.+|+.+
T Consensus 169 ~~~~~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~e 248 (454)
T PRK09034 169 KLRDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRE 248 (454)
T ss_pred HHHhcCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHH
Confidence 88888889999985 66778887766 479999999999999999999999998 3 4688999999999999
Q ss_pred HHHh
Q 010815 206 LIRQ 209 (500)
Q Consensus 206 ~~~~ 209 (500)
+...
T Consensus 249 la~~ 252 (454)
T PRK09034 249 LSYA 252 (454)
T ss_pred HHhC
Confidence 8643
No 129
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=98.59 E-value=6.4e-07 Score=102.19 Aligned_cols=126 Identities=18% Similarity=0.197 Sum_probs=85.3
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEe-eeCHHHHHHH
Q 010815 60 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVK-KVDVTRMRER 138 (500)
Q Consensus 60 ~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~-~vd~~~I~~l 138 (500)
+.+...-..++..+.++ .|++.|++ +..+...+- +++.. .++ ...+. ....+.|+++
T Consensus 120 d~i~s~GE~lSa~lla~--------~L~~~Gi~----a~~ld~~~~-i~t~~--------~~~-~~~~~~~~~~~~i~~~ 177 (819)
T PRK09436 120 AAIISRGERLSIAIMAA--------VLEARGHD----VTVIDPREL-LLADG--------HYL-ESTVDIAESTRRIAAS 177 (819)
T ss_pred hheeeHHHHHHHHHHHH--------HHHhCCCC----eEEECHHHe-EEecC--------CCC-CceechHhhHHHHHHH
Confidence 33333344446666664 68899998 555554331 22211 011 01121 1223456655
Q ss_pred H-hCCCcEEEcCc-ccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCcccC-------CCCccccccCHHHHHHH
Q 010815 139 L-DGGCLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPILD-------ESGHLIRFLTLQEADSL 206 (500)
Q Consensus 139 L-~~g~IPVi~~~-~~~~~g~~~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv~-------~~g~~I~~i~~~e~~~~ 206 (500)
+ +.+.|||+++. +.+..|+...+. +|..|+.+|..|+||.++++|||||++ |+.++|++++.+|+.++
T Consensus 178 ~~~~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el 257 (819)
T PRK09436 178 FIPADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMEL 257 (819)
T ss_pred HhcCCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHH
Confidence 4 46899999986 666778877775 899999999999999999999999983 45789999999999888
Q ss_pred H
Q 010815 207 I 207 (500)
Q Consensus 207 ~ 207 (500)
.
T Consensus 258 ~ 258 (819)
T PRK09436 258 S 258 (819)
T ss_pred H
Confidence 5
No 130
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=83.10 Aligned_cols=121 Identities=21% Similarity=0.169 Sum_probs=101.2
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEE-CCeEEEEEEEeee--cCCCeEEEEEEEEccCCc
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPF--FKEKCGEVAAIGVSPECR 417 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~-dg~IVG~~~l~~~--~~~~~~~I~~l~V~p~yR 417 (500)
++|+.+.+|+...-.+--+...+.++.......+..|.+.+.+.+. +++|-|++.-... ...+++++..+.|.|+||
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~~~~Fyl~yl~~~pe~~~~a~~p~~~imgyimgk~Eg~~~~wh~HvTAltVap~~R 82 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETFPISFYLIYLAIWPEDFIVAEAPTGEIMGYIMGKVEGKDTEWHGHVTALTVAPDYR 82 (173)
T ss_pred ccccccHHHHHhhccccccccccccceehhHHHHHhChHHhEeccCCCCceEEEEeeeccccCcceeeEEEEEEechhHH
Confidence 6888898898887777777778888888888899888888888764 4789898877533 234678899999999999
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEec
Q 010815 418 GQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECS 461 (500)
Q Consensus 418 G~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~ 461 (500)
+.|+|+.||..+++.....+...+.+++ +.|+.+|+|+||....
T Consensus 83 rl~la~~lm~~led~~d~~~a~fvDLfVr~sN~iAI~mYkkLGY~~YR 130 (173)
T KOG3234|consen 83 RLGLAAKLMDTLEDVSDVDNAYFVDLFVRVSNQIAIDMYKKLGYSVYR 130 (173)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeeeeccchhHHHHHHhcCceEEE
Confidence 9999999999999999887777777777 5799999999999875
No 131
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=98.57 E-value=5.6e-07 Score=82.73 Aligned_cols=116 Identities=18% Similarity=0.186 Sum_probs=84.4
Q ss_pred ccHHHHHHHHHHHHH----cCcCccCCH----HHHHhhcCcEEEEEECC-eEEEEEEEeeecCC--CeEEEEEEEEccCC
Q 010815 348 TDLSGIKQIIQPLVE----SGALVRRTD----EELLKALDSFYVVEREG-QIIACAALFPFFKE--KCGEVAAIGVSPEC 416 (500)
Q Consensus 348 ~D~~~I~~L~~~~~~----~~~~~~~s~----~~~~~~l~~~~v~~~dg-~IVG~~~l~~~~~~--~~~~I~~l~V~p~y 416 (500)
++++..++|+.+... .... -|.. .++...-..|+++..++ .+||+..+....+. ...++.-+-|.++|
T Consensus 54 ~~ldw~f~L~k~nm~~~Y~qs~~-Gw~~~~K~~El~~~~~~Yi~a~~~~~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~y 132 (202)
T KOG2488|consen 54 EDLDWCFSLFKKNMGAMYRQSSW-GWDDNSKAKELRNRKLRYICAWNNKSKLVGFTMFRFTVDTGDPVLYCYEVQVASAY 132 (202)
T ss_pred HHHHHHHHHHHhhhHHHhhhccc-ccCchhHHHHHhhccceEEEEEcCCCceeeEEEEEEEcccCCeEEEEEEEeehhhh
Confidence 788888888876222 1111 1222 23333333455555554 89999999854433 46778888999999
Q ss_pred cCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 417 RGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 417 RG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
||+|||+.|++.++..+..+..+.|.+.+ .++..||+++||.+.....
T Consensus 133 R~kGiGk~LL~~l~~~a~~~~~~kVmLTVf~~N~~al~Fy~~~gf~~~~~sp 184 (202)
T KOG2488|consen 133 RGKGIGKFLLDTLEKLADSRHMRKVMLTVFSENIRALGFYHRLGFVVDEESP 184 (202)
T ss_pred hccChHHHHHHHHHHHHHHHHhhhheeeeecccchhHHHHHHcCcccCCCCC
Confidence 99999999999999999888777777777 6899999999999876543
No 132
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=98.56 E-value=8e-07 Score=72.98 Aligned_cols=58 Identities=28% Similarity=0.472 Sum_probs=48.3
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
+.|..++|.|+|||+|+|+.|+..+.+.+.++|... ++.+ ..|+++|+|+||+.....
T Consensus 22 g~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~g~~~-~l~v~~~N~~s~~ly~klGf~~~~~~ 83 (86)
T PF08445_consen 22 GEIGGVYTLPEHRRRGLGSALVAALARELLERGKTP-FLYVDADNEASIRLYEKLGFREIEEE 83 (86)
T ss_dssp CCEEEEEE-GGGTTSSHHHHHHHHHHHHHHHTTSEE-EEEEETT-HHHHHHHHHCT-EEEEEE
T ss_pred cEEEEEEECHHHcCCCHHHHHHHHHHHHHHhCCCcE-EEEEECCCHHHHHHHHHcCCEEEEEE
Confidence 789999999999999999999999999999887654 3433 579999999999998654
No 133
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=98.50 E-value=1.5e-07 Score=87.69 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=96.1
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCC---------CeEEEEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKE---------KCGEVAAI 410 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~---------~~~~I~~l 410 (500)
+.++..++.++..+.+|.++.+..++...+..+.... -+..-++..++..+|-.+....... ...+|..+
T Consensus 17 ~~l~~it~~nl~~~~~l~~~~fP~~y~~kfy~~~~~~-~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~~~~~~~yi~~L 95 (187)
T KOG3138|consen 17 IELRLITPNNLKQLKQLNEDIFPISYVDKFYPDVLSN-GDLTQLAYYNEIAVGAVACKLIKFVQNAKRLFGNRVIYILSL 95 (187)
T ss_pred eeeccCCcchHHHHHHHhccccCcchHHHHHHHHHhc-CCHHHhhhhccccccceeeeehhhhhhhhhhhccceeEEEee
Confidence 6799999999999999976666655543322222211 1111122223344443333321111 13789999
Q ss_pred EEccCCcCCcHHHHHHHHHHHHHHHCC-CCEEEEEc----HHHHHHHHhCCCeEeceeccchhhhhhhcc-cCCceEEEE
Q 010815 411 GVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT----TRTADWFKSRGFRECSIEMIPEERRKRINL-SRNSKYYMK 484 (500)
Q Consensus 411 ~V~p~yRG~GiG~~Ll~~l~~~a~~~g-~~~I~l~~----~~a~~fYek~GF~~~~~~~lp~~~~~~~~~-~~~s~~~~k 484 (500)
.|.|.||.+|||+.|+.++.+.+.+.. ++.+++.+ ..++.||++.||+.......- |.. ......+++
T Consensus 96 gvl~~yR~~gIGs~Ll~~~~~~~~~~~~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~------y~~~~~~~~~~l~ 169 (187)
T KOG3138|consen 96 GVLPRYRNKGIGSKLLEFVKKYCSEAHQCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNY------YSILGPPDDSFLR 169 (187)
T ss_pred cccHHHHhcchHHHHHHHHHHHHhcccccceEEEEEEeCCCcHHHHHHhcCceEeeccccc------cccccCcchhhhh
Confidence 999999999999999999999998877 88899988 468999999999998643211 111 133445555
Q ss_pred ecCCCCCCCCC
Q 010815 485 KLLPDTSGIIV 495 (500)
Q Consensus 485 kll~~~~~~~~ 495 (500)
+.+..+++.+.
T Consensus 170 ~~~~~~~~~~~ 180 (187)
T KOG3138|consen 170 KLLIHGSGSPP 180 (187)
T ss_pred hheecCCCCCC
Confidence 55555545443
No 134
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=98.45 E-value=1e-06 Score=79.62 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=69.5
Q ss_pred EECCeEEEEEEEeeecC-CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEec
Q 010815 385 EREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECS 461 (500)
Q Consensus 385 ~~dg~IVG~~~l~~~~~-~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~ 461 (500)
+...+++|...+.+... +..+++..+.|+++.||+|.|+.||+.++.|++..|.+.+++.+..-.+||+++||+.+.
T Consensus 63 E~~~~VigH~rLS~i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~gf~~~yLsT~DQ~~FYe~lGYe~c~ 140 (225)
T KOG3397|consen 63 EENDEVLGHSRLSHLPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREKGFNEAYLSTDDQCRFYESLGYEKCD 140 (225)
T ss_pred ccccceeeeeccccCCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHhhhhheeeecccchhhhhhhcccccC
Confidence 55689999999987643 467899999999999999999999999999999999999999997669999999999875
No 135
>PLN02551 aspartokinase
Probab=98.42 E-value=5.3e-06 Score=89.88 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeEeeeCHHHH
Q 010815 56 SESLAAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEVKKVDVTRM 135 (500)
Q Consensus 56 ~~~l~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v~~vd~~~I 135 (500)
+...+.+...-..++..|.++ +|++.|++ +..+.+.+-++++... ++. ..|.....+.|
T Consensus 162 ~~~~d~ils~GE~lSa~lla~--------~L~~~Gi~----a~~lda~~~gi~t~~~--------~~~-a~i~~~~~~~l 220 (521)
T PLN02551 162 PRTRDYLVSFGERMSTRIFAA--------YLNKIGVK----ARQYDAFDIGFITTDD--------FTN-ADILEATYPAV 220 (521)
T ss_pred hHHHHHHHhHHHHHHHHHHHH--------HHHHCCCC----cEEechHHcceEecCC--------CCc-cchhhhhHHHH
Confidence 334444444455556666665 68899988 6667666655555321 110 12223344455
Q ss_pred HHHH-----hCCCcEEEcCc-ccC-CCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc---C----CCCcccccc
Q 010815 136 RERL-----DGGCLVILSNL-GYS-SSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFL 198 (500)
Q Consensus 136 ~~lL-----~~g~IPVi~~~-~~~-~~g~~~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i 198 (500)
...+ +.+.|||+++. +.+ ..|+...+. +|..|+.||.+|+|+.+.+.|||||+ | ++.++|+++
T Consensus 221 ~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~l 300 (521)
T PLN02551 221 AKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYL 300 (521)
T ss_pred HHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEeccc
Confidence 4444 45689999985 777 788887764 79999999999999999999999998 4 468899999
Q ss_pred CHHHHHHHHHh
Q 010815 199 TLQEADSLIRQ 209 (500)
Q Consensus 199 ~~~e~~~~~~~ 209 (500)
+.+|+.++..-
T Consensus 301 sy~Ea~elA~~ 311 (521)
T PLN02551 301 TFDEAAELAYF 311 (521)
T ss_pred CHHHHHHHHhC
Confidence 99999998643
No 136
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=98.41 E-value=1.5e-06 Score=84.22 Aligned_cols=79 Identities=22% Similarity=0.306 Sum_probs=65.3
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEE---cHHHHHHHHhCCCeEe
Q 010815 384 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL---TTRTADWFKSRGFREC 460 (500)
Q Consensus 384 ~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~---~~~a~~fYek~GF~~~ 460 (500)
.+.||+||+.+..... .+....|..++++|+|||||++..|+..+.+..-..|.+.+... .+.|.+.|+|.||+..
T Consensus 182 ~~~d~~iVa~A~t~a~-~~~~~~I~gV~T~peyR~kGyAt~lva~L~~~lL~eGk~~~L~~~~~N~~A~~iY~riGF~~~ 260 (268)
T COG3393 182 LEGDGKIVAKAETAAE-NPAYAQINGVYTHPEYRGKGYATALVATLAAKLLAEGKIPCLFVNSDNPVARRIYQRIGFREI 260 (268)
T ss_pred EccCCcEEEeeecccc-CCcceEEEEEEcCHHHccccHHHHHHHHHHHHHHhCCCeeEEEEecCCHHHHHHHHHhCCeec
Confidence 3445699999998743 45788999999999999999999999999999888887654333 2678999999999998
Q ss_pred cee
Q 010815 461 SIE 463 (500)
Q Consensus 461 ~~~ 463 (500)
+..
T Consensus 261 g~~ 263 (268)
T COG3393 261 GEF 263 (268)
T ss_pred ceE
Confidence 743
No 137
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.38 E-value=2.3e-06 Score=63.42 Aligned_cols=62 Identities=34% Similarity=0.483 Sum_probs=53.6
Q ss_pred EEEEECCeEEEEEEEeeecC-CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEE
Q 010815 382 YVVEREGQIIACAALFPFFK-EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL 443 (500)
Q Consensus 382 ~v~~~dg~IVG~~~l~~~~~-~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l 443 (500)
+++..+++++|++.+.+... ...+++..++|+|+|||+|+|+.|+..+++++++.++..+.+
T Consensus 2 ~~~~~~~~~ig~~~~~~~~~~~~~~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~ 64 (65)
T cd04301 2 LVAEDDGEIVGFASLSPDGSGGDTAYIGDLAVLPEYRGKGIGSALLEAAEEEARERGAKRLRL 64 (65)
T ss_pred EEEecCCEEEEEEEEEecCCCCccEEEEEEEECHHHcCcCHHHHHHHHHHHHHHHcCCcEEEe
Confidence 45667889999999986432 467899899999999999999999999999999988888765
No 138
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=98.36 E-value=3.2e-06 Score=76.85 Aligned_cols=123 Identities=17% Similarity=0.286 Sum_probs=89.1
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCc-------cCCHHHHHhhc-------------------CcEEEEEECCeEEEE
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALV-------RRTDEELLKAL-------------------DSFYVVEREGQIIAC 393 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~-------~~s~~~~~~~l-------------------~~~~v~~~dg~IVG~ 393 (500)
+.++.-+..|.+++.++..++...+... ....+.+.+++ ..+|.+..|+++||+
T Consensus 4 ~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~ivG~ 83 (174)
T COG3981 4 MKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIVGF 83 (174)
T ss_pred ccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEEEE
Confidence 3466666677777777776654443321 11113333333 146667778999999
Q ss_pred EEEeeecCC----CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEecee
Q 010815 394 AALFPFFKE----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 394 ~~l~~~~~~----~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~ 463 (500)
+.+.....+ .-++| .+.|.|+.||+|+|+.+++..+++|++.|++.|.+.+ ..+.+.-+++|=...+..
T Consensus 84 i~lRh~Ln~~ll~~gGHI-GY~VrPseR~KGYA~emLkl~L~~ar~lgi~~Vlvtcd~dN~ASrkvI~~NGGile~~~ 160 (174)
T COG3981 84 INLRHQLNDFLLEEGGHI-GYSVRPSERRKGYAKEMLKLALEKARELGIKKVLVTCDKDNIASRKVIEANGGILENEF 160 (174)
T ss_pred EEeeeecchHHHhcCCcc-cceeChhhhccCHHHHHHHHHHHHHHHcCCCeEEEEeCCCCchhhHHHHhcCCEEeEEE
Confidence 999753322 35677 7899999999999999999999999999999999988 468999999987766544
No 139
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.27 E-value=8.9e-06 Score=65.52 Aligned_cols=71 Identities=24% Similarity=0.326 Sum_probs=58.1
Q ss_pred EEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhC
Q 010815 382 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSR 455 (500)
Q Consensus 382 ~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~ 455 (500)
|.+..+|+.+|.+.+.. .++...|....|.|++||||+|+.|++.++++|+++|.+ |...|+-+.+|++++
T Consensus 2 F~~~~~g~~~a~l~Y~~--~~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~~~k-v~p~C~y~~~~~~~h 72 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRE--DGGVIVITHTEVPPELRGQGIAKKLVEAALDYARENGLK-VVPTCSYVAKYFRRH 72 (78)
T ss_dssp EEEESSTTEEEEEEEEE--SSSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHTT-E-EEETSHHHHHHHHH-
T ss_pred EEEEECCEEEEEEEEEe--CCCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHCCCE-EEEECHHHHHHHHhC
Confidence 34556688999999964 567899999999999999999999999999999998764 667777788888774
No 140
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.22 E-value=6.9e-06 Score=88.81 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=61.8
Q ss_pred CCeEEEEEEEeeecC-------CCeEEEEEEE-----------EccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HH
Q 010815 387 EGQIIACAALFPFFK-------EKCGEVAAIG-----------VSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TR 447 (500)
Q Consensus 387 dg~IVG~~~l~~~~~-------~~~~~I~~l~-----------V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~ 447 (500)
++.++|++.+..... +..+.|..+. ++|+|||+|+|+.||++++++|++.|++.+.+.+ ..
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~G~~~i~v~s~~~ 501 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEEGSEKILVISGIG 501 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHCCCCEEEEeeCch
Confidence 468999999974321 1234444444 3599999999999999999999999999998866 57
Q ss_pred HHHHHHhCCCeEecee
Q 010815 448 TADWFKSRGFRECSIE 463 (500)
Q Consensus 448 a~~fYek~GF~~~~~~ 463 (500)
+++||+|+||+..+..
T Consensus 502 A~~FY~klGf~~~g~y 517 (522)
T TIGR01211 502 VREYYRKLGYELDGPY 517 (522)
T ss_pred HHHHHHHCCCEEEcce
Confidence 9999999999987654
No 141
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.5e-05 Score=73.40 Aligned_cols=75 Identities=21% Similarity=0.259 Sum_probs=65.0
Q ss_pred CeEEEEEEEeeec---CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeE
Q 010815 388 GQIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRE 459 (500)
Q Consensus 388 g~IVG~~~l~~~~---~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~ 459 (500)
+++||++.+.... .....++ .+.+.|+|||+|+|+..+..+++++.. .++.+|.+.+ .+++++++|+||+.
T Consensus 77 ~~~iG~~~~~~~~~~~~~~~~~i-g~~l~~~~~g~G~~tea~~~~l~~~f~~~~l~ri~~~~~~~N~~S~rv~ek~Gf~~ 155 (187)
T COG1670 77 GELIGVIGLSDIDRAANGDLAEI-GYWLDPEYWGKGYATEALRALLDYAFEELGLHRIEATVDPENEASIRVYEKLGFRL 155 (187)
T ss_pred CeEEEEEEEEEeccccccceEEE-EEEEChHHhcCchHHHHHHHHHHHhhhhcCceEEEEEecCCCHHHHHHHHHcCChh
Confidence 5899999998655 2456677 677799999999999999999999987 6899999988 58999999999999
Q ss_pred ecee
Q 010815 460 CSIE 463 (500)
Q Consensus 460 ~~~~ 463 (500)
.+..
T Consensus 156 eg~~ 159 (187)
T COG1670 156 EGEL 159 (187)
T ss_pred hhhh
Confidence 8754
No 142
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.19 E-value=2e-05 Score=89.60 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=91.0
Q ss_pred HHHHHHHhHHHHHHHHhhCCCCCchhhhhcCCCCCccccceeeccccEEEEEEcCccCCcccceeeeE-eeeCHHHHHHH
Q 010815 60 AAAMEAAGGIRMMIEAKLSPGPPICNIRRHGDSSRWHEVGVSVASGNFLAAKRKGVVDGVDYGATGEV-KKVDVTRMRER 138 (500)
Q Consensus 60 ~~~~~~~~~i~~~i~~~l~~~~~~~~l~~~Gi~~~~~a~~l~~~d~~~~~~~~~~~~~~~d~g~~G~v-~~vd~~~I~~l 138 (500)
+.+...-..++..+.++ +|++.|++ +..+.+.+ +++.... +...+ .....+.|+.+
T Consensus 123 d~ils~GE~~Sa~lla~--------~L~~~G~~----a~~ld~~~--~i~~~~~---------~~~~i~~~~~~~~l~~~ 179 (810)
T PRK09466 123 AEVVGHGEVWSARLMAA--------LLNQQGLP----AAWLDARS--FLRAERA---------AQPQVDEGLSYPLLQQL 179 (810)
T ss_pred hheecHHHHHHHHHHHH--------HHHhCCCC----cEEEcHHH--heecCCC---------CCcccchhhhHHHHHHH
Confidence 33333444556666664 68899988 66665543 3433221 11122 12245788888
Q ss_pred HhCC--CcEEEcCc-ccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHH
Q 010815 139 LDGG--CLVILSNL-GYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADS 205 (500)
Q Consensus 139 L~~g--~IPVi~~~-~~~~~g~~~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~ 205 (500)
++.+ .|||+++. +.++.|+...+. +|..|+.||.+|+|+.+.+.|||||+ | |+.+.|++|+.+|+.+
T Consensus 180 ~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~e 259 (810)
T PRK09466 180 LAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASE 259 (810)
T ss_pred HhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHH
Confidence 8654 89999985 667788877664 79999999999999999999999998 3 4688999999999999
Q ss_pred HHHhh
Q 010815 206 LIRQR 210 (500)
Q Consensus 206 ~~~~~ 210 (500)
+..-|
T Consensus 260 la~~G 264 (810)
T PRK09466 260 LARLA 264 (810)
T ss_pred HHHcC
Confidence 96543
No 143
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.10 E-value=3.5e-05 Score=72.66 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=58.6
Q ss_pred CcEEEEEECC--eEEEEEEEeeec------------------------------------CCCeEEEEEEEEccCCcCCc
Q 010815 379 DSFYVVEREG--QIIACAALFPFF------------------------------------KEKCGEVAAIGVSPECRGQG 420 (500)
Q Consensus 379 ~~~~v~~~dg--~IVG~~~l~~~~------------------------------------~~~~~~I~~l~V~p~yRG~G 420 (500)
..+|++..++ +|+|++.+.... .-....|-+++|+|++|++|
T Consensus 27 h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g~RIvRIAvhP~~q~~G 106 (196)
T PF13718_consen 27 HRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSGARIVRIAVHPDLQRMG 106 (196)
T ss_dssp EEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEEEEEEEEEE-CCC-SSS
T ss_pred ceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcceeEEEEEEChhhhcCC
Confidence 4688888888 999988774210 00346788999999999999
Q ss_pred HHHHHHHHHHHHHH-------------------------HCCCCEEEE---EcHHHHHHHHhCCCeEeceeccc
Q 010815 421 QGDKLLDYIEKKAA-------------------------SLGLDMLFL---LTTRTADWFKSRGFRECSIEMIP 466 (500)
Q Consensus 421 iG~~Ll~~l~~~a~-------------------------~~g~~~I~l---~~~~a~~fYek~GF~~~~~~~lp 466 (500)
+|++|++.++++++ ..++..+-. .+....+||.|+||.++....-+
T Consensus 107 ~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~vDylGtSFG~t~~Ll~FW~k~gf~pv~l~~~~ 180 (196)
T PF13718_consen 107 YGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPPGVDYLGTSFGATPELLKFWQKNGFVPVYLGQTR 180 (196)
T ss_dssp HHHHHHHHHHHT-----------------------------S-SEEEEEEE--HHHHHHHHCTT-EEEEE-SS-
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccccccccccccCCCEEEeccCCCHHHHHHHHHCCcEEEEEecCc
Confidence 99999999999993 445554333 22578999999999998765444
No 144
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.07 E-value=3.6e-05 Score=75.35 Aligned_cols=109 Identities=24% Similarity=0.339 Sum_probs=81.6
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEE-CCeEEEEEEEeeecCCCeEEEEEEEEccCCcCC
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQ 419 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~-dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~ 419 (500)
.++.+...|...+..+-.-+...+. .++..++.+.++.. +++||+|.++.- --|.|++|+|.+||-
T Consensus 5 ~~~~v~~~e~~k~~~i~~fL~~~~l-------~~d~~ve~~v~~~~~~~~iiacGsiaG------nvikcvAvs~s~qGe 71 (352)
T COG3053 5 TFSRVKRSEKKKMAEIAEFLHQNDL-------RVDTTVEYFVAIYRDNEEIIACGSIAG------NVIKCVAVSESLQGE 71 (352)
T ss_pred EEEEEccchhhHHHHHHHHHhhcCc-------eecccceEEEEEEcCCCcEEEeccccc------ceeEEEEechhcccc
Confidence 3555555565555544332333333 23344555555554 499999998862 247799999999999
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEece
Q 010815 420 GQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSI 462 (500)
Q Consensus 420 GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~ 462 (500)
|+.-+|+.++++.+-++|..++++.| +....||+.+||.+...
T Consensus 72 Gl~lkl~TeLin~ay~~g~~hLFiyTKp~~~~lFk~~GF~~i~~ 115 (352)
T COG3053 72 GLALKLVTELINLAYERGRTHLFIYTKPEYAALFKQCGFSEIAS 115 (352)
T ss_pred cHHHHHHHHHHHHHHHcCCceEEEEechhHHHHHHhCCceEeec
Confidence 99999999999999999999999999 67899999999998753
No 145
>PRK09181 aspartate kinase; Validated
Probab=97.93 E-value=0.00027 Score=75.92 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=63.5
Q ss_pred HHHHHHHHh----CCCcEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc--C------CCCcccc
Q 010815 132 VTRMRERLD----GGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL--D------ESGHLIR 196 (500)
Q Consensus 132 ~~~I~~lL~----~g~IPVi~~~~~~~~g~~~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv--~------~~g~~I~ 196 (500)
.+.|...++ .+.|||+++.+.++.|++..+. +|..|+.||.+|+|+.+.+-|||+.+ | ++.+.|+
T Consensus 182 ~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~I~taDPriV~~~~A~~i~ 261 (475)
T PRK09181 182 DERIKKAFKDIDVTKELPIVTGYAKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYHLSSADPKLVGEDKVVPIG 261 (475)
T ss_pred HHHHHHHHhhhccCCcEEEecCCcCCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCccccCCCCcCCCCCCeEcC
Confidence 456776666 4789999987656678877664 79999999999999999999999722 3 3678999
Q ss_pred ccCHHHHHHHHHh
Q 010815 197 FLTLQEADSLIRQ 209 (500)
Q Consensus 197 ~i~~~e~~~~~~~ 209 (500)
+|+.+|+.++..-
T Consensus 262 ~lsy~Ea~ELA~~ 274 (475)
T PRK09181 262 RTNYDVADQLANL 274 (475)
T ss_pred ccCHHHHHHHHHc
Confidence 9999999999644
No 146
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=97.87 E-value=0.00046 Score=69.37 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=61.9
Q ss_pred HHHHHHHh----CCCcEEEcCcccCCCCCeeecC---HHHHHHHHHHHcCCCEEEEEecCccc--C------CCCccccc
Q 010815 133 TRMRERLD----GGCLVILSNLGYSSSGEVLNCN---TYEVATACALAIEADKLICIIDGPIL--D------ESGHLIRF 197 (500)
Q Consensus 133 ~~I~~lL~----~g~IPVi~~~~~~~~g~~~~i~---~D~~a~~lA~~l~Ad~li~lTdv~gv--~------~~g~~I~~ 197 (500)
+.|...++ .+.|||+++.+.+.+|+...+. +|..|+.||.+|+|+.+.+-|||+.. | ++.+.|++
T Consensus 177 ~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~i~taDPriV~~~~A~~i~~ 256 (304)
T cd04248 177 ERISEAFRDIDPRDELPIVTGYAKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFHLSSADPKLVGEDKARPIGR 256 (304)
T ss_pred HHHHHHHHhhccCCcEEEeCCccCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCceecCCCCccCCCCceEeCc
Confidence 45555554 5789999998666678887775 79999999999999999999999732 3 35678999
Q ss_pred cCHHHHHHHHHh
Q 010815 198 LTLQEADSLIRQ 209 (500)
Q Consensus 198 i~~~e~~~~~~~ 209 (500)
++.+|+.++..-
T Consensus 257 lsY~EA~ELA~~ 268 (304)
T cd04248 257 TNYDVADQLANL 268 (304)
T ss_pred cCHHHHHHHHHc
Confidence 999999998644
No 147
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=97.77 E-value=9.2e-05 Score=64.10 Aligned_cols=127 Identities=19% Similarity=0.174 Sum_probs=86.4
Q ss_pred ccccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeee--------------cCCCe
Q 010815 339 YEGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPF--------------FKEKC 404 (500)
Q Consensus 339 ~~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~--------------~~~~~ 404 (500)
.+.++.....|.+++..|-++..-+-. +...+.+..-....++++.+|.+.|++.-... .-++.
T Consensus 7 p~~~~D~~apd~aavLaLNNeha~els--wLe~erL~~l~~eAF~ArR~G~l~afl~tFd~~a~ydSpNFlWFrErYe~F 84 (167)
T COG3818 7 PILIRDVRAPDLAAVLALNNEHALELS--WLELERLYRLYKEAFVARRDGNLAAFLVTFDSSARYDSPNFLWFRERYENF 84 (167)
T ss_pred ceehhhhcCCchhhHHhccchhhhhcc--ccCHHHHHHHHHHHHHHhhccchhhheeeccccccCCCCceeehhhhCCce
Confidence 345566666677777777544332211 22233333333333455566665555443211 11356
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHhCCCeEeceeccch
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECSIEMIPE 467 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~------~~a~~fYek~GF~~~~~~~lp~ 467 (500)
.++..+.|....||+|+|++|...+.++|+..|+..+.+++ +.+..|.-.+||.+++...+-.
T Consensus 85 ~YvDRvVVA~~aRGrG~aRalY~Dlf~~Ae~agy~~~tCEVn~DppnpasdaFHaalGF~eVG~a~ihg 153 (167)
T COG3818 85 FYVDRVVVASRARGRGVARALYADLFSYAELAGYPYLTCEVNLDPPNPASDAFHAALGFHEVGQATIHG 153 (167)
T ss_pred EEEEEEEEEecccccchHHHHHHHHHHHHHhcCCceEEEEecCCCCChHHHHHhhhcCceEccceEEec
Confidence 78999999999999999999999999999999999998888 3578888999999999775553
No 148
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=97.76 E-value=0.00018 Score=62.65 Aligned_cols=106 Identities=16% Similarity=0.246 Sum_probs=66.9
Q ss_pred cccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc---CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcC
Q 010815 342 TRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRG 418 (500)
Q Consensus 342 iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l---~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG 418 (500)
+..+++.|.-++.+++ ...+.+.+..++ ..+|++.-|++++|-+.+.. ++..+.+..++|++-=|+
T Consensus 7 l~~ls~Qd~iDL~KIw---------p~~~~~~l~~~l~~~~~l~aArFNdRlLgAv~v~~--~~~~~~L~~l~VRevTRr 75 (128)
T PF12568_consen 7 LTTLSEQDRIDLAKIW---------PQQDPEQLEQWLDEGHRLFAARFNDRLLGAVKVTI--SGQQAELSDLCVREVTRR 75 (128)
T ss_dssp -SS--HHHHHHHHHH----------TTS----------SSEEEEEEEETTEEEEEEEEEE--ETTEEEEEEEEE-TT-SS
T ss_pred cCCCCHHHHHHHHHhC---------CCCCHHHHHHHhccCCeEEEEEechheeeeEEEEE--cCcceEEeeEEEeecccc
Confidence 4456666777777775 122333444443 46899999999999999884 356899999999999999
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc--------HHHHHHHHhCCCeEe
Q 010815 419 QGQGDKLLDYIEKKAASLGLDMLFLLT--------TRTADWFKSRGFREC 460 (500)
Q Consensus 419 ~GiG~~Ll~~l~~~a~~~g~~~I~l~~--------~~a~~fYek~GF~~~ 460 (500)
+|+|+.|++.+.+.+.+ ++...+.. .....|...+||...
T Consensus 76 RGVG~yLlee~~rq~p~--i~~w~l~~~~~~~~~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 76 RGVGLYLLEEVLRQLPD--IKHWWLADEGVEPQDRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp SSHHHHHHHHHHHHS-S----EEEE--TT-S--THHHHHHHHHHHT-EE-
T ss_pred ccHHHHHHHHHHHHCCC--CcEEEEecCCCcccchHHHHHHHHHcCcccc
Confidence 99999999999988843 44444433 235789999999654
No 149
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=97.63 E-value=0.00086 Score=66.49 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=64.5
Q ss_pred CCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HH
Q 010815 369 RTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TR 447 (500)
Q Consensus 369 ~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~ 447 (500)
.+.+++.+. ..-|++..+++||+-|.-... .++..+| .+.++|+|||||+|+.+-..++..|.++|.....--. ..
T Consensus 156 ~s~e~Fl~~-G~Gf~i~~~~~iVs~~~s~~~-~~~~~EI-~I~T~~~yR~kGLA~~~aa~~I~~Cl~~~l~P~WDc~N~~ 232 (265)
T PF12746_consen 156 SSYEDFLKN-GFGFCILHDGEIVSGCSSYFV-YENGIEI-DIETHPEYRGKGLATAVAAAFILECLENGLYPSWDCHNLA 232 (265)
T ss_dssp SSHHHHHHH---EEEEEETTEEEEEEEEEEE-ETTEEEE-EEEE-CCCTTSSHHHHHHHHHHHHHHHTT-EEE-EESSHH
T ss_pred CCHHHHHhc-CcEEEEEECCEEEEEEEEEEE-ECCEEEE-EEEECHHhhcCCHHHHHHHHHHHHHHHCCCCcCeeCCCHH
Confidence 356666554 445666678888875443322 3467888 8999999999999999999999999999876533222 67
Q ss_pred HHHHHHhCCCeEecee
Q 010815 448 TADWFKSRGFRECSIE 463 (500)
Q Consensus 448 a~~fYek~GF~~~~~~ 463 (500)
+.++-+|+||+.....
T Consensus 233 S~~lA~kLGf~~~~~Y 248 (265)
T PF12746_consen 233 SIALAEKLGFHFDFEY 248 (265)
T ss_dssp HHHHHHHCT--EEEEE
T ss_pred HHHHHHHcCCccccee
Confidence 9999999999987654
No 150
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.54 E-value=0.00028 Score=71.01 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=69.6
Q ss_pred CcEEEEEECCeEEEEEEEeee---cCC---CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHH
Q 010815 379 DSFYVVEREGQIIACAALFPF---FKE---KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWF 452 (500)
Q Consensus 379 ~~~~v~~~dg~IVG~~~l~~~---~~~---~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fY 452 (500)
..++++..+.++++.....++ +.+ ....|..+++.|.|||+|.-++|+.+.++...+.|+...+|.. .+.+||
T Consensus 39 ~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~kG~p~s~L~P-~s~~iY 117 (389)
T COG4552 39 PNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARKGYPVSALHP-FSGGIY 117 (389)
T ss_pred CcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHcCCeeEEecc-CchhhH
Confidence 578999999999998877653 121 3457899999999999999999999999999999998776655 679999
Q ss_pred HhCCCeEece
Q 010815 453 KSRGFRECSI 462 (500)
Q Consensus 453 ek~GF~~~~~ 462 (500)
+|+||+..+.
T Consensus 118 rKfGye~asn 127 (389)
T COG4552 118 RKFGYEYASN 127 (389)
T ss_pred hhccccccce
Confidence 9999998763
No 151
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.51 E-value=0.0012 Score=73.58 Aligned_cols=59 Identities=27% Similarity=0.410 Sum_probs=48.0
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEE---EcHHHHHHHHhCCCeEecee
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFL---LTTRTADWFKSRGFRECSIE 463 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l---~~~~a~~fYek~GF~~~~~~ 463 (500)
.+.|-+|+|+|++|++|||++|++.++++++ .++.-+-. .++...+||.||||.++...
T Consensus 531 G~RIvRIAvhPe~q~~GiGsrlL~~l~~~a~-~~~DwlgvsFG~t~~L~rFW~rnGF~pVhls 592 (758)
T COG1444 531 GWRIVRIAVHPELQRMGIGSRLLALLIEEAR-KGLDWLGVSFGYTEELLRFWLRNGFVPVHLS 592 (758)
T ss_pred eeeEEEEEeCHHHHhcCHHHHHHHHHHHHHh-cCCCEEeeccCCCHHHHHHHHHcCeEEEEec
Confidence 4568899999999999999999999999997 33443322 22678999999999998765
No 152
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=97.45 E-value=0.00036 Score=58.57 Aligned_cols=61 Identities=30% Similarity=0.399 Sum_probs=53.7
Q ss_pred CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCE
Q 010815 379 DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 440 (500)
Q Consensus 379 ~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~ 440 (500)
+.+|+...+|+.+|.+...+. .++...|.+-+|.+++||||+|+.|+.++++.|++.|.+-
T Consensus 15 ~~~y~~~~~G~~~~e~~y~~~-~~~~i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~g~ki 75 (99)
T COG2388 15 NGRYVLTDEGEVIGEATYYDR-GENLIIIDHTYVPDELRGQGIAQKLVEKALEEAREAGLKI 75 (99)
T ss_pred ceEEEEecCCcEEEEEEEecC-CCCEEEEecCcCCHHHcCCcHHHHHHHHHHHHHHHcCCeE
Confidence 468889999999999998843 4578889999999999999999999999999999988753
No 153
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=97.40 E-value=0.00031 Score=65.04 Aligned_cols=132 Identities=20% Similarity=0.285 Sum_probs=81.4
Q ss_pred eeehhhhcCCCcceeeccccc-ccccCCcc-cHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEe
Q 010815 320 LLLELFKRDGMGTMVASDLYE-GTRTAKVT-DLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVVEREGQIIACAALF 397 (500)
Q Consensus 320 ll~~l~~~~~~GT~i~~d~~~-~iR~a~~~-D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~ 397 (500)
|..|||++.+.||+|.+...+ .......- |.+.+.+++.+.+......+.....+......+|+ ++..-|.+.+.
T Consensus 2 L~kELFt~sgagTlirrG~~i~~~~s~~~~~d~~kL~~ll~~sf~~~~~v~~yl~~l~~~~~~iy~---d~~y~~~AIVt 78 (170)
T PF04768_consen 2 LQKELFTDSGAGTLIRRGYKILKHSSLSEFVDLDKLRALLERSFGGKLDVDHYLDRLNNRLFKIYV---DEDYEGAAIVT 78 (170)
T ss_dssp HHHHHHSSSTSSEEEE----EEEESSCCCSS-HHHHHHHHHHHSTSSSBHTTHHHHHHTS-SEEEE---ETTSSEEEEEE
T ss_pred ccchhcCCCCCceEEecCeeeEEecCccccCCHHHHHHHHHhcccccccHHHHHHHhhccceEEEE---eCCceEEEEEE
Confidence 567999999999999986553 44556665 99999999887773333333333444333333333 23333444443
Q ss_pred e---ecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHHH-h-CCCeE
Q 010815 398 P---FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWFK-S-RGFRE 459 (500)
Q Consensus 398 ~---~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~---~~a~~fYe-k-~GF~~ 459 (500)
+ ...+...++..|+|.|..||.|++..++..+.+...+ ++..+ .+..+||- + -|+-.
T Consensus 79 ~e~~~~~~~v~yLdKFav~~~~~g~gv~D~vf~~i~~d~p~-----L~Wrsr~~n~~~~Wyf~rs~G~~~ 143 (170)
T PF04768_consen 79 PEGPDSNGPVPYLDKFAVSKSAQGSGVADNVFNAIRKDFPK-----LFWRSREDNPNNKWYFERSDGSFK 143 (170)
T ss_dssp EE-SCTCTSEEEEEEEEE-HHHHHTTHHHHHHHHHHHH-SS-----EEEEEETT-TTHHHHHHH-SEEEE
T ss_pred ecCCCCCCCCeEEEEEEecchhhhcCHHHHHHHHHHHhccc-----eEEEecCCCCcccEEEEeeEEEEE
Confidence 2 3345689999999999999999999999998644322 44444 45677773 3 46655
No 154
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=97.36 E-value=0.00061 Score=55.78 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=60.4
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeE
Q 010815 384 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRE 459 (500)
Q Consensus 384 ~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~ 459 (500)
...+|..|..+.+. ..+++...++.|+|||||+.+.++....+.+.++|+. ++..+ ..++++.+++||..
T Consensus 4 lgpeG~PVSW~lmd-----qtge~rmgyTlPeyR~~G~~~~v~~~~~~~L~~~g~P-~Y~hv~~~N~~~~r~~~~lg~~~ 77 (89)
T PF08444_consen 4 LGPEGNPVSWSLMD-----QTGEMRMGYTLPEYRGQGLMSQVMYHLAQYLHKLGFP-FYGHVDEDNEASQRLSKSLGFIF 77 (89)
T ss_pred cCCCCCEeEEEEec-----ccccccccccCHhHhcCCHHHHHHHHHHHHHHHCCCC-eEeehHhccHHHHHHHHHCCCee
Confidence 34568888888775 4678999999999999999999999999999999875 56666 46899999999998
Q ss_pred e
Q 010815 460 C 460 (500)
Q Consensus 460 ~ 460 (500)
.
T Consensus 78 ~ 78 (89)
T PF08444_consen 78 M 78 (89)
T ss_pred c
Confidence 5
No 155
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=97.27 E-value=0.0034 Score=58.92 Aligned_cols=116 Identities=16% Similarity=0.157 Sum_probs=79.6
Q ss_pred CcccHHHHHHHHHHHHHcCcC--ccC----CHHHHHhhcCcEEEEEECCeEEEEEEEeeec-------------------
Q 010815 346 KVTDLSGIKQIIQPLVESGAL--VRR----TDEELLKALDSFYVVEREGQIIACAALFPFF------------------- 400 (500)
Q Consensus 346 ~~~D~~~I~~L~~~~~~~~~~--~~~----s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~------------------- 400 (500)
..+++++++++..+.+.+... .+. ..++++..-..+.+..++|+++||+.+.+..
T Consensus 6 ~~~~l~~~~rlR~~vFv~rlgW~v~~~dg~E~DqyD~~~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p 85 (182)
T PF00765_consen 6 SRRLLEEMFRLRHRVFVDRLGWDVPCEDGMEIDQYDDPDAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAP 85 (182)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCHHCCTSEE--TTGCTT-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---
T ss_pred CHHHHHHHHHHHHHHHHHhhCCCCcCCCCcEeeecCCCCCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCC
Confidence 445677888888777766441 111 1222333222355567789999999996421
Q ss_pred -CCCeEEEEEEEEccCCcC------CcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEec
Q 010815 401 -KEKCGEVAAIGVSPECRG------QGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 461 (500)
Q Consensus 401 -~~~~~~I~~l~V~p~yRG------~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~ 461 (500)
....+|+.+|+|+|+.++ .-+...|+..+.++|.++|++.+...+ ....++|+++||...-
T Consensus 86 ~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e~a~~~gi~~~v~V~~~~~~r~l~r~G~~~~~ 154 (182)
T PF00765_consen 86 RSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVEFALSNGIRHIVGVVDPAMERILRRAGWPVRR 154 (182)
T ss_dssp SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHHHHHCTT-SEEEEEEEHHHHHHHHHCT-EEEE
T ss_pred CCCcceeeeEEEEcccccccccccccHHHHHHHHHHHHHHHHCCCCEEEEEEChHHHHHHHHcCCceEE
Confidence 136799999999998542 247789999999999999999988887 5789999999999763
No 156
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.17 E-value=0.0035 Score=64.00 Aligned_cols=145 Identities=15% Similarity=0.205 Sum_probs=74.8
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccC-----------CHHHHHhhc-------CcEEEEEE--CCeEEEEEEEeee
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRR-----------TDEELLKAL-------DSFYVVER--EGQIIACAALFPF 399 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~-----------s~~~~~~~l-------~~~~v~~~--dg~IVG~~~l~~~ 399 (500)
+.||+++..|++++++|-...-..=-..+. +.+.+.... ..++|+++ .|+|+|++.+...
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I~a~ 81 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGPGFTSLPPDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAIEAA 81 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-TT-TTS-S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEEESS
T ss_pred eEEecCchhhHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeEEec
Confidence 469999999999999996554321112233 333442222 14677776 4899999988410
Q ss_pred -----------------------------------cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH---HCCCCEE
Q 010815 400 -----------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA---SLGLDML 441 (500)
Q Consensus 400 -----------------------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~---~~g~~~I 441 (500)
+-.+..+|+.++++|+||+-|.|+.|-+.-.=.+. ++-..+|
T Consensus 82 vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~sEl~tLfL~p~~R~~~~G~lLSr~RfLFiA~~~~rF~~~v 161 (342)
T PF04958_consen 82 VGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGCSELCTLFLDPDYRGGGNGRLLSRSRFLFIAQHRERFADRV 161 (342)
T ss_dssp TTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTSEEEEEEEE-GGGTTSHHHHHHHHHHHHHHHH-GGGS-SEE
T ss_pred cCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCCeeeEEEEECHHHcCCchHHHHHHHHHHHHHhChhhcchhe
Confidence 11245689999999999999999988776554443 3455677
Q ss_pred EEEc------HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEecCC
Q 010815 442 FLLT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 488 (500)
Q Consensus 442 ~l~~------~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kkll~ 488 (500)
...- ...-+||+.+|=...+-.....-... ...+|-|+..++|
T Consensus 162 iAElrG~~De~G~SPFWdalG~~FF~mdF~eAD~Ls----g~~~k~FIaeLMP 210 (342)
T PF04958_consen 162 IAELRGVSDEDGRSPFWDALGRHFFDMDFQEADYLS----GIGNKQFIAELMP 210 (342)
T ss_dssp EEE--B---TT---HHHHHTGGGTS---HHHHHHHH----HH-----------
T ss_pred eeeccCCcCCCCCCchHHHhhccccCCCHHHHHHHH----cCCcchHHHHhCC
Confidence 7766 35689999988665543321111111 2245666666654
No 157
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.04 E-value=0.001 Score=53.95 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=40.0
Q ss_pred EEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCC
Q 010815 410 IGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGF 457 (500)
Q Consensus 410 l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF 457 (500)
++|+|+|||+|+|+.|+..++++++..++. ....+..+|+++||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~~g~~----~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARKRGIS----LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHHcCce----ehHHHHHHHHhcCC
Confidence 999999999999999999999999998776 33578999999999
No 158
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=96.92 E-value=0.00063 Score=60.72 Aligned_cols=60 Identities=15% Similarity=0.205 Sum_probs=47.6
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHH-HHCCCCEEEEEc-HHHHHHHHhCCCeEece
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKA-ASLGLDMLFLLT-TRTADWFKSRGFRECSI 462 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a-~~~g~~~I~l~~-~~a~~fYek~GF~~~~~ 462 (500)
....|+.++|+|+||.+|+|..|+..-++.. .+.=..++.+.+ .+..+||+++||+.++.
T Consensus 100 ~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~i~~r~~Li~h~pLvPFYEr~gFk~vgp 161 (190)
T KOG4144|consen 100 HNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQPIVRRAALICHDPLVPFYERFGFKAVGP 161 (190)
T ss_pred cceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCccccceeeeecCCccchhHhcCceeecc
Confidence 3478999999999999999999887755544 333345666666 57899999999999876
No 159
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=96.88 E-value=0.009 Score=58.66 Aligned_cols=120 Identities=15% Similarity=0.097 Sum_probs=81.3
Q ss_pred ccccCC-cccHHHHHHHHHHHHHcCcCcc--------CCHHHHHhhcCcEEEEE-ECCeEEEEEEEeee-----------
Q 010815 341 GTRTAK-VTDLSGIKQIIQPLVESGALVR--------RTDEELLKALDSFYVVE-REGQIIACAALFPF----------- 399 (500)
Q Consensus 341 ~iR~a~-~~D~~~I~~L~~~~~~~~~~~~--------~s~~~~~~~l~~~~v~~-~dg~IVG~~~l~~~----------- 399 (500)
.++.+. .+++++++++..+.+-++..-+ ...++++....++++.+ .+++++||+.+.+.
T Consensus 9 ~v~~a~~~~~~~~~~~lR~~VFv~e~gw~~~~~~~~~~E~D~~D~~~~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~ 88 (241)
T TIGR03694 9 EIIPAVTPELLEEAFRLRYQVYCEELGFEPPSDYPDGLETDEYDAHSVHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPF 88 (241)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCcCCCCCCCCcEEEEEECCCCCEEEEEEEeccccccccccccH
Confidence 344444 3457888888877665443211 11222222222334443 35899999998642
Q ss_pred ------------------cCCCeEEEEEEEEccCCcCC--------c--------------------HHHHHHHHHHHHH
Q 010815 400 ------------------FKEKCGEVAAIGVSPECRGQ--------G--------------------QGDKLLDYIEKKA 433 (500)
Q Consensus 400 ------------------~~~~~~~I~~l~V~p~yRG~--------G--------------------iG~~Ll~~l~~~a 433 (500)
..+..+|+..++|+|+||++ | +...|+..+.++|
T Consensus 89 e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a 168 (241)
T TIGR03694 89 EKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSGVGVIETEAPFSESERRRFPHIPLGLYLGLIALS 168 (241)
T ss_pred HHHhccccchhhcCccccCCCceEEeehheECHhHhCCcccccccccccccccccccchhhcccCchHHHHHHHHHHHHH
Confidence 01257899999999999974 2 5577999999999
Q ss_pred HHCCCCEEEEEc-HHHHHHHHhCCCeEe
Q 010815 434 ASLGLDMLFLLT-TRTADWFKSRGFREC 460 (500)
Q Consensus 434 ~~~g~~~I~l~~-~~a~~fYek~GF~~~ 460 (500)
...|++.++..+ ....+++.++|+...
T Consensus 169 ~~~Gi~~~~~v~~~~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 169 SANGITHWYAIMEPRLARLLSRFGIQFR 196 (241)
T ss_pred HHCCCcEEEEEeCHHHHHHHHHhCCceE
Confidence 999999988888 567888999998764
No 160
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=96.84 E-value=0.018 Score=55.19 Aligned_cols=114 Identities=13% Similarity=0.151 Sum_probs=77.2
Q ss_pred cccHHHHHHHHHHHHHcCcC--cc----CCHHHHHhhcCcEEEE-EECCeEEEEEEEeee--------------------
Q 010815 347 VTDLSGIKQIIQPLVESGAL--VR----RTDEELLKALDSFYVV-EREGQIIACAALFPF-------------------- 399 (500)
Q Consensus 347 ~~D~~~I~~L~~~~~~~~~~--~~----~s~~~~~~~l~~~~v~-~~dg~IVG~~~l~~~-------------------- 399 (500)
.+++++++++..+.+-+.+. .+ ...++++..-..+++. ..+|+++||+.+.+.
T Consensus 15 ~~~l~~~~rLR~~VF~~elgW~~~~~~g~E~D~yD~~~~~yll~~~~~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~ 94 (207)
T PRK13834 15 ASLLKQMHRLRARVFGGRLGWDVSITDGEERDQFDDLKPTYILAISDSGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLN 94 (207)
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCcCccCCCCCCCEEEEEEeCCCeEEEEEecccCCCcchhhhhcHHhcCCCCCC
Confidence 34567777777766554332 11 1122233222234443 456899999988431
Q ss_pred cCCCeEEEEEEEEccCCcCC---c----HHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEe
Q 010815 400 FKEKCGEVAAIGVSPECRGQ---G----QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFREC 460 (500)
Q Consensus 400 ~~~~~~~I~~l~V~p~yRG~---G----iG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~ 460 (500)
..+..+|+..++|+|+++.. + +...|+..+.+++..+|++.++..+ +...+.|.++||...
T Consensus 95 ~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~Gi~~~~~v~~~~~~r~l~r~G~~~~ 163 (207)
T PRK13834 95 AHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMANGYTEIVTATDLRFERILARAGWPMQ 163 (207)
T ss_pred CCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHcCCCeE
Confidence 12357899999999986422 2 5678999999999999999988877 456789999998764
No 161
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=96.71 E-value=0.026 Score=49.36 Aligned_cols=98 Identities=18% Similarity=0.076 Sum_probs=69.0
Q ss_pred CcccHHHHHHHHHHHHHcC---cCccCCHHHHHh---hc-----CcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEcc
Q 010815 346 KVTDLSGIKQIIQPLVESG---ALVRRTDEELLK---AL-----DSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSP 414 (500)
Q Consensus 346 ~~~D~~~I~~L~~~~~~~~---~~~~~s~~~~~~---~l-----~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p 414 (500)
+++|++.+.+++...+... +..+.+.+-+.. .+ -.++++..+|++||+...... +...+......+|
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~--~~~~~~~~~g~~~ 104 (142)
T PF13480_consen 27 DPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRH--GGTLYYWYGGYDP 104 (142)
T ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEE--CCEEEEEEEEECH
Confidence 3456777777776544333 212333322222 22 246777889999998877633 3567777889999
Q ss_pred CCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 415 ECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 415 ~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
+|+..+.|..|+..++++|.+.|++.+.+..
T Consensus 105 ~~~~~~~~~~l~~~~i~~a~~~g~~~~d~g~ 135 (142)
T PF13480_consen 105 EYRKYSPGRLLLWEAIRWAIERGLRYFDFGG 135 (142)
T ss_pred hhHhCCHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 9999999999999999999999998877755
No 162
>PRK10456 arginine succinyltransferase; Provisional
Probab=96.63 E-value=0.0061 Score=62.10 Aligned_cols=145 Identities=16% Similarity=0.158 Sum_probs=87.8
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEeee--
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF-- 399 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----------------~~~~v~~~--dg~IVG~~~l~~~-- 399 (500)
+.+||++..|++++++|-...-..=-..+.+.+.+.+.+ ..++|+++ .|+|+|++.+...
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG 81 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGGGLTSLPANEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVG 81 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 579999999999999996543211112333333333322 24677775 5899999988410
Q ss_pred ---------------------------------cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH---HHCCCCEEEE
Q 010815 400 ---------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFL 443 (500)
Q Consensus 400 ---------------------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a---~~~g~~~I~l 443 (500)
+-.+..+|+.++++|+||+-|.|+.|-+.-.=.+ +++-.++|.+
T Consensus 82 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viA 161 (344)
T PRK10456 82 LNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVA 161 (344)
T ss_pred CCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhhe
Confidence 0013468999999999999999988776544333 3344455555
Q ss_pred Ec------HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEecCC
Q 010815 444 LT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 488 (500)
Q Consensus 444 ~~------~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kkll~ 488 (500)
+- ...-+||+.+|=...+-.... ..|-....+|.|+..|+|
T Consensus 162 EmRG~~De~G~SPFWd~lg~hFF~mdF~e----AD~Lsg~~~k~FIaeLMP 208 (344)
T PRK10456 162 EMRGVIDEHGYSPFWQSLGKRFFSMDFSR----ADYLCGTGQKAFIAELMP 208 (344)
T ss_pred eccCccCCCCCCccHHHhhccccCCCHHH----HHHHhcCCCceeHHHHCC
Confidence 54 245778888776655433111 111112346666666664
No 163
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=96.41 E-value=0.012 Score=59.81 Aligned_cols=144 Identities=11% Similarity=0.162 Sum_probs=86.4
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccC-----------CHHHHHhhc------CcEEEEEE--CCeEEEEEEEeee--
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRR-----------TDEELLKAL------DSFYVVER--EGQIIACAALFPF-- 399 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~-----------s~~~~~~~l------~~~~v~~~--dg~IVG~~~l~~~-- 399 (500)
.|||++..|++++++|-...-..=-..+. +.+.+.... ..++|+++ .|+|+|++.+...
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG 80 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAIGVTSLPADRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVASAG 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEeccc
Confidence 37999999999999995443211112232 333332222 24677775 5899999988410
Q ss_pred ---------------------------------cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH---HHCCCCEEEE
Q 010815 400 ---------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFL 443 (500)
Q Consensus 400 ---------------------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a---~~~g~~~I~l 443 (500)
+-.+..+|+.++++|+||+-|.|+.|-+.-.=.+ +++-.++|.+
T Consensus 81 ~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~RfLFiA~~~erF~~~viA 160 (336)
T TIGR03245 81 YGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRARLLFMAAHRERFQSRIIV 160 (336)
T ss_pred CCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHHHHHHHHhhHhhhhhhhee
Confidence 0014568999999999999999988776544333 3444455666
Q ss_pred Ec------HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEecCC
Q 010815 444 LT------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 488 (500)
Q Consensus 444 ~~------~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kkll~ 488 (500)
+- +..-+||+.+|=...+-.... ..|-....+|.|+..|+|
T Consensus 161 EmrG~~De~G~SPFWd~lg~hFF~mdF~e----AD~Lsg~~~k~FIaeLMP 207 (336)
T TIGR03245 161 EIQGVQDDNGDSPFWDAIGRHFFDLDFAT----AEYYSGIKSKTFIAELMP 207 (336)
T ss_pred eccCccCCCCCCccHHHhhccccCCCHHH----HHHHhcCCCceeHHHHCC
Confidence 55 245778888776665433111 111112345666666664
No 164
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=96.40 E-value=0.0093 Score=60.70 Aligned_cols=122 Identities=15% Similarity=0.133 Sum_probs=76.7
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEeee---
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFPF--- 399 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----------------~~~~v~~~--dg~IVG~~~l~~~--- 399 (500)
.+||++..|++++++|-...-..--..+.+.+.+.+.+ ..++|+++ .|+|+|++.+...
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~vG~ 80 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGIGLTSLPANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAAVGL 80 (336)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 37999999999999996543211112333333333322 24677775 5899999988410
Q ss_pred --------------------------------cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH---HHCCCCEEEEE
Q 010815 400 --------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFLL 444 (500)
Q Consensus 400 --------------------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a---~~~g~~~I~l~ 444 (500)
+-.+..+|+.++++|+||+-|.|+.|-+.-.=.+ +++-.++|.++
T Consensus 81 ~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (336)
T TIGR03244 81 EEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKSRFLFIAQFRERFSKKIIAE 160 (336)
T ss_pred CCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHHHHHHHHhhHhhhhhhhhhh
Confidence 0014568999999999999999988766544333 23334445554
Q ss_pred c------HHHHHHHHhCCCeEece
Q 010815 445 T------TRTADWFKSRGFRECSI 462 (500)
Q Consensus 445 ~------~~a~~fYek~GF~~~~~ 462 (500)
- +..-+||+.+|=...+-
T Consensus 161 mrG~~De~G~SPFWd~lg~hFF~m 184 (336)
T TIGR03244 161 MRGVSDEQGRSPFWNALGRHFFSM 184 (336)
T ss_pred hcCccCCCCCCchHHHhhccccCC
Confidence 4 24577888877665543
No 165
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=96.38 E-value=0.015 Score=59.20 Aligned_cols=144 Identities=15% Similarity=0.158 Sum_probs=86.4
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCcCccC-----------CHHHHHhhc-----CcEEEEEE--CCeEEEEEEEeee---
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGALVRR-----------TDEELLKAL-----DSFYVVER--EGQIIACAALFPF--- 399 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~~~~~-----------s~~~~~~~l-----~~~~v~~~--dg~IVG~~~l~~~--- 399 (500)
.+||++..|++++++|-...-..=-..+. +...+.... ..++|+++ .|+|+|++.+...
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~G~TsLP~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~vG~ 80 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGIGLTSLPADRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAAVGL 80 (335)
T ss_pred CcccCccccHHHHHHHHHHcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEecccC
Confidence 37999999999999995443211011222 333332111 24667775 5899999988410
Q ss_pred --------------------------------cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH---HHCCCCEEEEE
Q 010815 400 --------------------------------FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA---ASLGLDMLFLL 444 (500)
Q Consensus 400 --------------------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a---~~~g~~~I~l~ 444 (500)
+-.+..+|+.++++|+||+-|.|+.|-+.-.=.+ +++-..+|..+
T Consensus 81 ~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~RfLFiA~~~erF~~~viAE 160 (335)
T TIGR03243 81 DEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRSRFLFIAAFRERFGDKIIAE 160 (335)
T ss_pred CCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHHHHHHHHhhHhhhhhhheee
Confidence 0014568999999999999999988776544333 34444556665
Q ss_pred c------HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEecCC
Q 010815 445 T------TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLP 488 (500)
Q Consensus 445 ~------~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kkll~ 488 (500)
- ...-+||+.+|=...+-.... ..|-....+|.|+..|+|
T Consensus 161 mrG~~De~G~SPFWd~lg~hFF~mdF~~----AD~Lsg~~~k~FIaeLMP 206 (335)
T TIGR03243 161 MRGVSDEQGRSPFWEALGRHFFSMDFAQ----ADYLSGIGSKTFIAELMP 206 (335)
T ss_pred ccCccCCCCCCccHHHhhccccCCCHHH----HHHHhcCCCceeHHHHCC
Confidence 5 245778888876665433111 111112356666666664
No 166
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=96.27 E-value=0.035 Score=51.86 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=51.2
Q ss_pred EECCeEEEEEEEeeec------CCCeEEEEEEEEccCCcCCcHHHHHHHHHH-HHHHHCCCCEEEEEcHHHHHHHHh-CC
Q 010815 385 EREGQIIACAALFPFF------KEKCGEVAAIGVSPECRGQGQGDKLLDYIE-KKAASLGLDMLFLLTTRTADWFKS-RG 456 (500)
Q Consensus 385 ~~dg~IVG~~~l~~~~------~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~-~~a~~~g~~~I~l~~~~a~~fYek-~G 456 (500)
....++|+.+.+..+. +.....++.++++|+|||+|+++ |+..+. +..+..+-..+...+..+.++|.+ +|
T Consensus 53 KgT~~via~~~~~~~~~l~~~~d~pl~~~G~~w~~p~yRg~~~~k-l~~~~~~~~~~~~~~N~~~~~~~~~~~~w~k~~G 131 (181)
T PF06852_consen 53 KGTDRVIATVHLIRFDPLNPSPDKPLQFIGFFWIDPEYRGKGIMK-LQDDICMDELDSVDDNSVAQGNVKMSNFWHKMFG 131 (181)
T ss_pred cCCCcEEEEEEEEEeccCCCCCCCCeEEEeeeeeCCcccCcchHH-HHHHHHHHHhccCCCceeeecCHHHHHHHHHHhC
Confidence 3446788877764322 34678999999999999999996 554444 444333222222233578888877 69
Q ss_pred CeEece
Q 010815 457 FRECSI 462 (500)
Q Consensus 457 F~~~~~ 462 (500)
|...+.
T Consensus 132 ~~~~~h 137 (181)
T PF06852_consen 132 FDDYGH 137 (181)
T ss_pred CCCCcc
Confidence 887765
No 167
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=96.27 E-value=0.015 Score=59.15 Aligned_cols=112 Identities=13% Similarity=0.154 Sum_probs=69.7
Q ss_pred cccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCc-EEEEEECCeEEEEEEEeee--cCCCeEEEEEEEEccCCcC-CcHH
Q 010815 347 VTDLSGIKQIIQPLVESGALVRRTDEELLKALDS-FYVVEREGQIIACAALFPF--FKEKCGEVAAIGVSPECRG-QGQG 422 (500)
Q Consensus 347 ~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~-~~v~~~dg~IVG~~~l~~~--~~~~~~~I~~l~V~p~yRG-~GiG 422 (500)
.-|++.+.+|+.+.+...+ ....+...+.. ...+..-|..-|.+.+.-. ..++..|+..|+|.++.|| -||+
T Consensus 344 ~Ldl~r~q~LI~~SFkRTL----d~h~y~~r~~~~La~~iVsgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gis 419 (495)
T COG5630 344 DLDLPRLQHLIQSSFKRTL----DPHYYETRINTPLARAIVSGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGIS 419 (495)
T ss_pred hcCcHHHHHHHHHHHhhcc----CHHHHHHhccCcceeEEeeccceeeEEEEeeccCCCCCcceeeeeccccccccchHH
Confidence 4578899999877776644 45556665532 2222223344455555433 3347899999999999999 8999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEcHHHHHHH--HhCCCeEecee
Q 010815 423 DKLLDYIEKKAASLGLDMLFLLTTRTADWF--KSRGFRECSIE 463 (500)
Q Consensus 423 ~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fY--ek~GF~~~~~~ 463 (500)
..++.-+.+.--.+=.++-.... ++-+|| +.-|+-.....
T Consensus 420 d~vfniM~e~fP~eL~WRSR~~N-~vNkwYf~rSvg~lk~~~~ 461 (495)
T COG5630 420 DAVFNIMREEFPNELFWRSRHNN-QVNKWYFARSVGYLKQKQD 461 (495)
T ss_pred HHHHHHHHHhCcHhhhhhhcccC-cchheeeehhhehhhccCC
Confidence 99998877665433233333333 566776 33465554333
No 168
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.92 E-value=0.12 Score=48.96 Aligned_cols=114 Identities=13% Similarity=0.164 Sum_probs=77.6
Q ss_pred cccHHHHHHHHHHHHHcCcC------ccCCHHHHHhhcCcEEEE-EECCeEEEEEEEeee--------------------
Q 010815 347 VTDLSGIKQIIQPLVESGAL------VRRTDEELLKALDSFYVV-EREGQIIACAALFPF-------------------- 399 (500)
Q Consensus 347 ~~D~~~I~~L~~~~~~~~~~------~~~s~~~~~~~l~~~~v~-~~dg~IVG~~~l~~~-------------------- 399 (500)
+.-+++++++..+.+.+... .....+++++.--.|.++ ..+++|+||+.+.+-
T Consensus 14 ~~~l~em~rlR~~vF~erL~W~v~~~~g~E~DqyD~~~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P 93 (209)
T COG3916 14 PKALEEMHRLRYQVFKERLGWDVVCIDGFEIDQYDNLDTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPP 93 (209)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceeccCCccccccCCCCceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCC
Confidence 34466777777666555432 111222233222234444 678999999998531
Q ss_pred cCCCeEEEEEEEEcc--CCcCC---c-HHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEe
Q 010815 400 FKEKCGEVAAIGVSP--ECRGQ---G-QGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFREC 460 (500)
Q Consensus 400 ~~~~~~~I~~l~V~p--~yRG~---G-iG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~ 460 (500)
.+.+.+|...|+|++ .-+.. . ++..|+.-+++++..+|+++|...+ ....+.+++.||...
T Consensus 94 ~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~ie~a~~~G~~~IvtVt~~~meril~r~Gw~~~ 161 (209)
T COG3916 94 SSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMIEYALARGITGIVTVTDTGMERILRRAGWPLT 161 (209)
T ss_pred CCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHHHHHHHcCCceEEEEEchHHHHHHHHcCCCeE
Confidence 123678999999997 33333 2 4778999999999999999988888 567889999999865
No 169
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=95.76 E-value=0.027 Score=50.19 Aligned_cols=122 Identities=18% Similarity=0.131 Sum_probs=76.5
Q ss_pred ccccCCcccHHHHHHHHHHHHHcCc--CccCCHHH----HHhhc---C--cEEEEEE--C-------CeEEEEEEEeeec
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESGA--LVRRTDEE----LLKAL---D--SFYVVER--E-------GQIIACAALFPFF 400 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~~--~~~~s~~~----~~~~l---~--~~~v~~~--d-------g~IVG~~~l~~~~ 400 (500)
.+-|+++.+.+...+++..-.-..+ ..+.+.++ -..|- + .|+|++- + ...+|=+-++...
T Consensus 15 ILVPYe~~HV~kYHeWMknEelr~LT~SE~LtLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGDvNlFlt~ 94 (185)
T KOG4135|consen 15 ILVPYEPCHVPKYHEWMKNEELRRLTASEPLTLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGDVNLFLTT 94 (185)
T ss_pred EEeeccccchhHHHhHhhhHHHHHhhcCCCcchhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccceeeEEec
Confidence 5678888888888888754222111 12222221 11122 1 3555421 1 2356644443221
Q ss_pred --C-------CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHC-CCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 401 --K-------EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASL-GLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 401 --~-------~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~-g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
+ -..+++.-+...|..||+|+|+..+..++.|+... ++....+.. .+++++|+|++|..+..
T Consensus 95 ~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l~l~Ky~vkig~~nk~sl~lFkk~~f~q~~~ 170 (185)
T KOG4135|consen 95 SPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVLKLDKYEVKIGMDNKPSLRLFKKFLFTQVFY 170 (185)
T ss_pred CCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHhhhheEEEEecCCCchHHHHHHHhhheeeee
Confidence 1 13467777889999999999999999999999764 555545544 57899999999998754
No 170
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=95.17 E-value=0.14 Score=44.01 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=58.2
Q ss_pred CcEEEEEECCeEEEEEEEeee---cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHH
Q 010815 379 DSFYVVEREGQIIACAALFPF---FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFK 453 (500)
Q Consensus 379 ~~~~v~~~dg~IVG~~~l~~~---~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~--~~a~~fYe 453 (500)
..-|....++.+||++.+... ..+....++.+.+-..|||+|+|++....+-..++ |...+.... ++|+.||+
T Consensus 37 ~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~--g~w~Va~i~EN~PA~~fwK 114 (143)
T COG5628 37 REAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW--GVWQVATVRENTPARAFWK 114 (143)
T ss_pred cceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh--ceEEEEEeccCChhHHHHH
Confidence 455677789999999988632 22344668889999999999999999988876664 455544433 68999999
Q ss_pred hCCCe
Q 010815 454 SRGFR 458 (500)
Q Consensus 454 k~GF~ 458 (500)
+.-+.
T Consensus 115 ~~~~t 119 (143)
T COG5628 115 RVAET 119 (143)
T ss_pred hhhcc
Confidence 96554
No 171
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.76 E-value=0.059 Score=56.89 Aligned_cols=123 Identities=16% Similarity=0.210 Sum_probs=89.5
Q ss_pred ccccccccCCcccHHHHHHHHHHHHHcCcC-ccCCHHHHHhhc--CcEEE--EE-----ECCeEEEEEEEeeecCCCeEE
Q 010815 337 DLYEGTRTAKVTDLSGIKQIIQPLVESGAL-VRRTDEELLKAL--DSFYV--VE-----REGQIIACAALFPFFKEKCGE 406 (500)
Q Consensus 337 d~~~~iR~a~~~D~~~I~~L~~~~~~~~~~-~~~s~~~~~~~l--~~~~v--~~-----~dg~IVG~~~l~~~~~~~~~~ 406 (500)
.|.+++++..+.+++.|.+|..+.-+-... .+.+.+++.+.. ..+.+ +. .|.-+||++.+... ++.+.
T Consensus 411 em~l~vs~~de~~i~RIsQLtqkTNQFnlTtkRy~e~dV~~~~~~~~~li~sv~l~DKfgDnGiigvviv~kk--~~~w~ 488 (574)
T COG3882 411 EMRLTVSKFDEVNIPRISQLTQKTNQFNLTTKRYNEEDVRQMQEDPNFLIFSVSLKDKFGDNGIIGVVIVEKK--ESEWF 488 (574)
T ss_pred eEEEEEeeccccCcHHHHHHhhcccceeechhhhcHHHHHHHhhCCCeEEEEEEeccccccCceEEEEEEEec--CCeEE
Confidence 355667888899999999997665544443 334566666633 23333 22 25679999888743 46777
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc------HHHHHHHHhCCCeEec
Q 010815 407 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT------TRTADWFKSRGFRECS 461 (500)
Q Consensus 407 I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~------~~a~~fYek~GF~~~~ 461 (500)
|..+..+=..=|+++-+.||..+++.|...|+..|...- .+...||+++||+..+
T Consensus 489 IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~ 549 (574)
T COG3882 489 IDTFLMSCRVLGRKVEQRLMNSLEEQALSEGINTIRGYYIPTEKNAPVSDFYERMGFKLKG 549 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeEecccccCCcHHHHHHHhcccccc
Confidence 877776655669999999999999999999998887765 2568999999999554
No 172
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=94.53 E-value=0.28 Score=46.86 Aligned_cols=120 Identities=13% Similarity=0.073 Sum_probs=78.2
Q ss_pred ccccCC-cccHHHHHHHHHHHHHcCcCccCCHHHHHhhc---CcEEEEEE-CCeEEEEEEEee-ecCCC-eEEEEEEEEc
Q 010815 341 GTRTAK-VTDLSGIKQIIQPLVESGALVRRTDEELLKAL---DSFYVVER-EGQIIACAALFP-FFKEK-CGEVAAIGVS 413 (500)
Q Consensus 341 ~iR~a~-~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l---~~~~v~~~-dg~IVG~~~l~~-~~~~~-~~~I~~l~V~ 413 (500)
.+|.++ +.+++...+++...+..+-........+.... ..+.-+.. |+++||..--++ ..... ..+-+..+|.
T Consensus 4 vvrrl~dp~el~~~~dV~~~aWg~~d~~~~~~d~i~al~~~GGlvlgAf~~dg~lVGls~G~pg~r~g~~y~ySH~~gV~ 83 (266)
T COG3375 4 VVRRLTDPAELDEAEDVQASAWGSEDRDGAPADTIRALRYHGGLVLGAFSADGRLVGLSYGYPGGRGGSLYLYSHMLGVR 83 (266)
T ss_pred eEEecCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHhcCCeEEEEEcCCCcEEEEEeccCCcCCCceeeeeeehhcc
Confidence 344444 56677777777665554433333334444322 23444444 459999887776 22222 4566789999
Q ss_pred cCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEe
Q 010815 414 PECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFREC 460 (500)
Q Consensus 414 p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~ 460 (500)
|++|+.|+|-+|-...-+++.++|+..+...-.+..++-.++.|...
T Consensus 84 e~~k~sglg~aLK~~Qre~a~~~G~tli~WTfDPl~alNA~fNi~KL 130 (266)
T COG3375 84 EEVKGSGLGVALKMKQRERALSMGYTLIAWTFDPLNALNARFNISKL 130 (266)
T ss_pred ccccccchhhhhHHHHHHHHHhcCeeeEEEecccchhhhhhcchhhh
Confidence 99999999999999999999999999888766544444444444433
No 173
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=93.74 E-value=0.085 Score=55.41 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=45.4
Q ss_pred ccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 413 SPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 413 ~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
...||.+|+|+.||+.+++.|++.+.++|.+.. -.+..+|+|+||+..+..
T Consensus 459 ~~~~QH~G~G~~L~~~AE~ia~ee~~~ki~viSgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 459 EDEWQHRGYGRELLEEAERIAREEGAKKILVISGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred cchhhcccHHHHHHHHHHHHHHhhccccEEEEecccHHHHHHHhCccccCCc
Confidence 578999999999999999999999888887766 578999999999987755
No 174
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=93.07 E-value=0.54 Score=42.86 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=60.9
Q ss_pred CcccHHHHHHHHHHHHH----cCcCccCCHHHHHhhcC------cE-EEEE--ECCeEEEEEEEeee----c--CCCeEE
Q 010815 346 KVTDLSGIKQIIQPLVE----SGALVRRTDEELLKALD------SF-YVVE--REGQIIACAALFPF----F--KEKCGE 406 (500)
Q Consensus 346 ~~~D~~~I~~L~~~~~~----~~~~~~~s~~~~~~~l~------~~-~v~~--~dg~IVG~~~l~~~----~--~~~~~~ 406 (500)
++++++++++|+.+..- ..|....+.+-+...+. .+ +.+. ..+++||++.-.+. . .-...+
T Consensus 33 d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~irv~~~~~~~~e 112 (162)
T PF01233_consen 33 DDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATIRVRDKVIKMVE 112 (162)
T ss_dssp SHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEEEEeeeEeeeee
Confidence 34455666666655321 12234445555555442 22 2232 36899999987542 1 124678
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEE
Q 010815 407 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLF 442 (500)
Q Consensus 407 I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~ 442 (500)
|..++|++++|.++++--|+..+.+.+...|+.+-.
T Consensus 113 INFLCVhKklRskrlAPvLIkEItRRvn~~gI~qAv 148 (162)
T PF01233_consen 113 INFLCVHKKLRSKRLAPVLIKEITRRVNLQGIWQAV 148 (162)
T ss_dssp EEEEEE-GGGTTSSHHHHHHHHHHHHHHTTT--EEE
T ss_pred EEEEeecHhHhhcCCcHHHHHHHHHHhhhcCceeee
Confidence 999999999999999999999999999999987643
No 175
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=92.34 E-value=0.18 Score=39.60 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=26.1
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKA 433 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a 433 (500)
.+-|..+.|+|.+|++||+++|++.+.+..
T Consensus 5 ~~GI~RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 5 VCGISRIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeEEEEeChhhhhhhHHHHHHHHHHHhc
Confidence 456789999999999999999999887653
No 176
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=92.24 E-value=0.32 Score=48.07 Aligned_cols=88 Identities=17% Similarity=0.281 Sum_probs=56.7
Q ss_pred cccccCCcccHHHHHHHHHHHHHcCcCccCCHHHHHhhc----------------CcEEEEEE--CCeEEEEEEEee---
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVESGALVRRTDEELLKAL----------------DSFYVVER--EGQIIACAALFP--- 398 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l----------------~~~~v~~~--dg~IVG~~~l~~--- 398 (500)
+.+||++..|++++++|-.+.-..--..+.+.+.+...+ ..++|.++ .|+++|++++..
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~G~TsLP~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a~vG 81 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGVGLTSLPADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEAAVG 81 (336)
T ss_pred cccccccccCHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEEeec
Confidence 458999999999999996543221112333333333322 24677776 699999988741
Q ss_pred ----ec----------------------------CCCeEEEEEEEEccCCcCCcHHHHHHH
Q 010815 399 ----FF----------------------------KEKCGEVAAIGVSPECRGQGQGDKLLD 427 (500)
Q Consensus 399 ----~~----------------------------~~~~~~I~~l~V~p~yRG~GiG~~Ll~ 427 (500)
++ -....+++.++++|+||.-+.|+.|-+
T Consensus 82 l~~PfYsyRv~tlvhaS~~L~v~~~i~~L~L~Nd~TG~SEl~sLFl~pd~Rkg~nG~Llsr 142 (336)
T COG3138 82 LNDPFYSYRVGTLVHASPELNVYNEIPTLFLSNDLTGNSELCTLFLDPDWRKGGNGRLLSK 142 (336)
T ss_pred cCCccceeeeeeeeecCccccccccceeEEEeccCcCchhhhheeecHHHhcccchhhhhh
Confidence 10 013446889999999999888876544
No 177
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=91.37 E-value=0.73 Score=38.79 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=39.8
Q ss_pred EEEEECCeEEEEEEEeeec-CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHH
Q 010815 382 YVVEREGQIIACAALFPFF-KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKK 432 (500)
Q Consensus 382 ~v~~~dg~IVG~~~l~~~~-~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~ 432 (500)
+-+..++...||+.+.+.. .....++..++|.|+.||+|+++.|+..+.+.
T Consensus 11 ~~~y~~e~y~~~aIvt~~~~~~~~~yLdKfaV~~~~~g~gvad~vf~~i~~d 62 (99)
T cd04264 11 HAIYLSEGYNAAAIVTYEGVNNGVPYLDKFAVSSSAQGEGTSDALWRRLRRD 62 (99)
T ss_pred eEEEEeCCceEEEEEeccCCCCCceEEEEEEEchhhhhcChHHHHHHHHHhh
Confidence 3444556677888776432 24788999999999999999999999988855
No 178
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=91.23 E-value=1.5 Score=41.23 Aligned_cols=49 Identities=16% Similarity=0.158 Sum_probs=37.4
Q ss_pred eEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCC
Q 010815 389 QIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGL 438 (500)
Q Consensus 389 ~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~ 438 (500)
+++|+-.-... +.....+.|+.|.|.||++|+|+.|++..=..++..+.
T Consensus 66 h~vGyFSKEk~-s~~~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e~~ 114 (188)
T PF01853_consen 66 HIVGYFSKEKE-SWDNNNLSCILTLPPYQRKGYGRFLIDFSYELSRREGK 114 (188)
T ss_dssp EEEEEEEEESS--TT-EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHTTS
T ss_pred eeEEEEEEEec-ccCCeeEeehhhcchhhhcchhhhhhhhHHHHhhccCc
Confidence 57887765532 23456899999999999999999999999888887653
No 179
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=90.36 E-value=1.7 Score=37.65 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=33.2
Q ss_pred EEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHHh
Q 010815 407 VAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKS 454 (500)
Q Consensus 407 I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~--~~a~~fYek 454 (500)
|-+++|+++.|++|+|++|++++++.-.-. ...+..+. ....+|.+|
T Consensus 49 vLDFyVhes~QR~G~Gk~LF~~ML~~e~~~-p~~~a~DrPS~Kll~Fl~K 97 (120)
T PF05301_consen 49 VLDFYVHESRQRRGYGKRLFDHMLQEENVS-PHQLAIDRPSPKLLSFLKK 97 (120)
T ss_pred eeeEEEEeceeccCchHHHHHHHHHHcCCC-cccceecCCcHHHHHHHHH
Confidence 458999999999999999999999543221 22333333 456777766
No 180
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=90.08 E-value=2.3 Score=40.04 Aligned_cols=116 Identities=16% Similarity=0.197 Sum_probs=77.9
Q ss_pred ccccCCcccHHHHHHHHHHHHHcC-cCccCCHHHHHhhcC------cEEEEEEC-CeEEEEEEEeeecC-----C-----
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVESG-ALVRRTDEELLKALD------SFYVVERE-GQIIACAALFPFFK-----E----- 402 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~~-~~~~~s~~~~~~~l~------~~~v~~~d-g~IVG~~~l~~~~~-----~----- 402 (500)
-+|+++++|++++.+|+++....- +....+.+++.+|+- ..||.+++ ++|-.+++++..++ +
T Consensus 30 glR~m~~~Dv~~v~~Ll~~yl~~f~l~~~fs~eev~Hw~lp~~~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~~l 109 (190)
T PF02799_consen 30 GLRPMEEKDVPQVTKLLNKYLKKFDLAPVFSEEEVKHWFLPRKNVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHKTL 109 (190)
T ss_dssp TEEE--GGGHHHHHHHHHHHHTTSSEEEE--HHHHHHHHS-BTTTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSSEE
T ss_pred ccccCchhhHHHHHHHHHHHHHhcccccccCHHHHHhhcccCCCeEEEEEEecCCCceeeEEEEeecceeecCCCCccce
Confidence 489999999999999999877652 235568899999982 35666665 48888888864321 1
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEec
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 461 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~ 461 (500)
..+++ .+++.... =-..|+..++..|++.|+.-..+.. -....|.+++.|.+-+
T Consensus 110 ~aAY~-fY~~~~~~----~l~~Lm~DaLi~Ak~~gfDVFNaLd~mdN~~fL~~lKFg~Gd 164 (190)
T PF02799_consen 110 KAAYS-FYYVATST----RLKELMNDALILAKNEGFDVFNALDLMDNSSFLEDLKFGPGD 164 (190)
T ss_dssp EEEEE-EEEEESSS----HHHHHHHHHHHHHHHTTESEEEEESTTTGGGTTTTTT-EEEE
T ss_pred eeeee-eeeeecCC----CHHHHHHHHHHHHHHcCCCEEehhhhccchhhHhhCCccCCC
Confidence 12333 34444332 2457899999999999988766665 3456889999999765
No 181
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=90.06 E-value=0.7 Score=51.01 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=26.6
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHH
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAA 434 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~ 434 (500)
+.|-+++|+|+|+++|+|++.++.+.++-.
T Consensus 615 aRIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 615 ARIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred ceEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 467799999999999999999999988753
No 182
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=89.91 E-value=5.1 Score=35.37 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=48.0
Q ss_pred EEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEE
Q 010815 382 YVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL 444 (500)
Q Consensus 382 ~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~ 444 (500)
.....++++||++.+.... +...-+.. +=+|++..+.+|+-.+-..+++|++.|.+.+++-
T Consensus 42 ~~~~~~~kLiav~v~D~l~-~glSaVY~-fyDPd~~~~SlG~~~iL~eI~~a~~~~l~y~YLG 102 (128)
T PF04377_consen 42 LEYRLDGKLIAVAVVDILP-DGLSAVYT-FYDPDYSKRSLGTYSILREIELARELGLPYYYLG 102 (128)
T ss_pred EEEEeCCeEEEEEEeeccc-chhhheee-eeCCCccccCcHHHHHHHHHHHHHHcCCCEEeeC
Confidence 3446889999998887443 33444533 4499999999999999999999999999988873
No 183
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=89.76 E-value=1.2 Score=45.96 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=52.9
Q ss_pred hCCCcEEEcCc-c-cCCCCCeee---cCHHHHHHHHHHHcCCCEEEEEecCccc---C----CCCccccccCHHHHHHHH
Q 010815 140 DGGCLVILSNL-G-YSSSGEVLN---CNTYEVATACALAIEADKLICIIDGPIL---D----ESGHLIRFLTLQEADSLI 207 (500)
Q Consensus 140 ~~g~IPVi~~~-~-~~~~g~~~~---i~~D~~a~~lA~~l~Ad~li~lTdv~gv---~----~~g~~I~~i~~~e~~~~~ 207 (500)
....|||+++. + .-+.|-... .-.|..|+.+|++|++|.+=.--||||+ | |.+++++.++.+|+.++.
T Consensus 257 ken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELa 336 (559)
T KOG0456|consen 257 KENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELA 336 (559)
T ss_pred cCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHH
Confidence 35789999863 3 223343322 3469999999999999999999999987 3 468999999999988874
No 184
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=89.54 E-value=1.3 Score=37.23 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.0
Q ss_pred EEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 010815 384 VEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 433 (500)
Q Consensus 384 ~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a 433 (500)
+..++..=||+.+.+.......+|..++|.|+.||+|+++.|+..+.+..
T Consensus 14 ~y~~e~y~~~aivt~~~~~~~~yLdKfaV~~~~~g~gv~d~vf~~i~~d~ 63 (99)
T cd04265 14 IYLSEGYNAAAIVTNEEVDGVPYLDKFAVSSSAQGEGTGEALWRRLRRDF 63 (99)
T ss_pred EEEeCCCcEEEEEeccCCCCceEEEEEEEchhhhhcChHHHHHHHHHhhC
Confidence 33344455666665332246889999999999999999999999888553
No 185
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=89.19 E-value=2.8 Score=42.89 Aligned_cols=81 Identities=17% Similarity=0.165 Sum_probs=59.0
Q ss_pred EEEEE-ECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcH----HHHHHHHhC
Q 010815 381 FYVVE-REGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTT----RTADWFKSR 455 (500)
Q Consensus 381 ~~v~~-~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~----~a~~fYek~ 455 (500)
++++. .+++++|.+.+.... +..+....+.+++++..+-...|+-+++++|.++|++...+-.. ...+|-+++
T Consensus 197 l~~a~~~~g~~va~~l~~~~~--~~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~G~~~fDfG~s~~~~G~~~FK~~~ 274 (330)
T TIGR03019 197 VLTVRLGDGVVASAVLSFYFR--DEVLPYYAGGLREARDVAANDLMYWELMRRACERGLRVFDFGRSKRGTGPFKFKKNW 274 (330)
T ss_pred EEEEEeCCCCEEEEEEEEEeC--CEEEEEeccChHHHHhhChHHHHHHHHHHHHHHCCCcEEEcCCCCCCCccHHHHhcC
Confidence 45556 688888876665332 23332245678999999999999999999999999998877541 345566778
Q ss_pred CCeEecee
Q 010815 456 GFRECSIE 463 (500)
Q Consensus 456 GF~~~~~~ 463 (500)
||++....
T Consensus 275 G~~~~~l~ 282 (330)
T TIGR03019 275 GFEPQPLH 282 (330)
T ss_pred CCeeccce
Confidence 99987643
No 186
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=89.03 E-value=3.3 Score=42.34 Aligned_cols=116 Identities=16% Similarity=0.211 Sum_probs=80.5
Q ss_pred ccccCCcccHHHHHHHHHHHHHc-CcCccCCHHHHHhhcC------cEEEEEE-CCeEEEEEEEeeecCC----------
Q 010815 341 GTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALD------SFYVVER-EGQIIACAALFPFFKE---------- 402 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~~~~-~~~~~~s~~~~~~~l~------~~~v~~~-dg~IVG~~~l~~~~~~---------- 402 (500)
-+|+++.+|++++.+|+..+... .+....+.+++.+|+- ..||++. +|+|-+++.++.....
T Consensus 262 G~R~me~kDvp~V~~Ll~~yl~qf~la~~f~~eev~Hwf~p~e~VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~~ktl 341 (421)
T KOG2779|consen 262 GLREMEEKDVPAVFRLLRNYLKQFELAPVFDEEEVEHWFLPRENVVYSYVVESPNGKITDFCSFYSLPSTVMGNPKYKTL 341 (421)
T ss_pred CcccccccchHHHHHHHHHHHHheecccccCHHHhHhhcccccceEEEEEEECCCCcccceeeEEeccccccCCCCccee
Confidence 58999999999999999886544 4556678899999872 2455655 7999999998754321
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEec
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 461 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~ 461 (500)
..+++ .+.|..+ =--..|+..++-.++..|+.-..+.. -....|+++++|-+-+
T Consensus 342 ~aaYl-yY~v~~~----t~~~~lvnDalilak~~gfDVFNAld~meN~~fl~~LkFg~Gd 396 (421)
T KOG2779|consen 342 QAAYL-YYNVATS----TPLLQLVNDALILAKQKGFDVFNALDLMENESFLKDLKFGPGD 396 (421)
T ss_pred eeeeE-EEeccCC----ccHHHHHHHHHHHHHhcCCceeehhhhhhhhhHHHhcCcCcCC
Confidence 12233 3333332 11456888888888888876444433 4568899999998865
No 187
>PRK14852 hypothetical protein; Provisional
Probab=88.96 E-value=2.7 Score=48.97 Aligned_cols=123 Identities=11% Similarity=0.122 Sum_probs=84.6
Q ss_pred ccccCC-cccHHHHHHHHHH-HHHcCcCccCCHHHHHh---hc--CcEEEEEECCeEEEEEEEeeec-------------
Q 010815 341 GTRTAK-VTDLSGIKQIIQP-LVESGALVRRTDEELLK---AL--DSFYVVEREGQIIACAALFPFF------------- 400 (500)
Q Consensus 341 ~iR~a~-~~D~~~I~~L~~~-~~~~~~~~~~s~~~~~~---~l--~~~~v~~~dg~IVG~~~l~~~~------------- 400 (500)
.||.++ .+|+..++.|..+ +...++..+-....... .+ ..+|++...+++++...+.+..
T Consensus 30 ~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~~~~ps~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl~~D~lf~~ 109 (989)
T PRK14852 30 AIKIAETPDEYTRAFRLVYEEYIRSGYLKPHPSRMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGLPMDTLYKP 109 (989)
T ss_pred ceeecCCHHHHHHHHHHHHHHHHHcCCCCcCcccccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCcCHHHHHHH
Confidence 466665 5778889988776 45555553322221111 11 2347776667777777664321
Q ss_pred --------CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHh-CCCeEecee
Q 010815 401 --------KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKS-RGFRECSIE 463 (500)
Q Consensus 401 --------~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek-~GF~~~~~~ 463 (500)
....++++.++++|+.|.+-+=-.|++.+.+++...++..+.+.+ ++-..||++ +||+..+..
T Consensus 110 eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~~~~~dd~~i~VnPkH~~FY~r~l~f~~ig~~ 182 (989)
T PRK14852 110 EVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSMMSEVDDILVTVNPKHVKFYTDIFLFKPFGEV 182 (989)
T ss_pred HHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHHHcCCCeEEEEECcchHHHHHHHhCCcccccc
Confidence 125789999999998888777778888888888778898888888 567999997 799998743
No 188
>PTZ00064 histone acetyltransferase; Provisional
Probab=88.85 E-value=1.2 Score=47.58 Aligned_cols=102 Identities=18% Similarity=0.101 Sum_probs=60.5
Q ss_pred CCCcceeecccccccccCCcccHHH---HHHHHHHHHHcCcCccCCHHHHHhhcC--cEEEE-EEC---CeEEEEEEEee
Q 010815 328 DGMGTMVASDLYEGTRTAKVTDLSG---IKQIIQPLVESGALVRRTDEELLKALD--SFYVV-ERE---GQIIACAALFP 398 (500)
Q Consensus 328 ~~~GT~i~~d~~~~iR~a~~~D~~~---I~~L~~~~~~~~~~~~~s~~~~~~~l~--~~~v~-~~d---g~IVG~~~l~~ 398 (500)
...|..|+++..+.|..++=..-.. -.-|+.++|-.+- .+..+++ .|||+ +.| .++||+-.-..
T Consensus 307 hPPG~EIYR~~~iSifEVDG~~~klYCQNLCLLAKLFLDhK-------TLYyDVdpFlFYVLtE~D~~G~HiVGYFSKEK 379 (552)
T PTZ00064 307 HPPGNEIYRKDNISVFEIDGALTRGYAENLCYLAKLFLDHK-------TLQYDVEPFLFYIVTEVDEEGCHIVGYFSKEK 379 (552)
T ss_pred CCCCCeEEEeCCEEEEEEeCccchhHHHHHHHHHHHhccCc-------cccccccceEEEEEEEecCCCcEEEEEecccc
Confidence 3457778776555555544333222 2222233333322 1222332 24554 333 47888765542
Q ss_pred ecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC
Q 010815 399 FFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437 (500)
Q Consensus 399 ~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g 437 (500)
. +.....+.||.|.|.||++|+|+.|++..=+..+..|
T Consensus 380 ~-S~~~nNLACILtLPpyQRKGYGklLIdfSYeLSrrEg 417 (552)
T PTZ00064 380 V-SLLHYNLACILTLPCYQRKGYGKLLVDLSYKLSLKEG 417 (552)
T ss_pred c-CcccCceEEEEecchhhhcchhhhhhhhhhhhhhhcC
Confidence 2 2234579999999999999999999999888887765
No 189
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=87.52 E-value=1.3 Score=44.20 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.1
Q ss_pred CeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC
Q 010815 388 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437 (500)
Q Consensus 388 g~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g 437 (500)
.++||+-.-.... .....+.|+.|.|.||++|+|+-|++..=+.++..|
T Consensus 140 ~h~vGYFSKEK~s-~~~nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~Eg 188 (290)
T PLN03238 140 SHIVGYFSKEKVS-AEDYNLACILTLPPYQRKGYGKFLISFAYELSKREG 188 (290)
T ss_pred cEEEEEeceeccc-cCCCcEEEEEecChhhhccHhHhHHHHHhHHhhccC
Confidence 4688876554222 233568999999999999999999999888887665
No 190
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=86.85 E-value=11 Score=36.93 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=55.7
Q ss_pred cCCHHHHHhhc-----C-cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEE
Q 010815 368 RRTDEELLKAL-----D-SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDML 441 (500)
Q Consensus 368 ~~s~~~~~~~l-----~-~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I 441 (500)
+.+.+++..-+ . ..+....+|++||++.+.... +...-+ -.+=||+|-.+.+|+-.+-..+++|++.|.+.+
T Consensus 127 ~~~~~~y~~Fl~~~~~~t~~~ey~~~g~LiaVav~D~l~-d~lSAV-Y~FyDPd~~~~SLG~~~iL~qI~~ak~~gl~y~ 204 (240)
T PRK01305 127 PPSRDQYAQFLEDSWVNTRFIEFRGDGKLVAVAVTDVLD-DGLSAV-YTFYDPDEEHRSLGTFAILWQIELAKRLGLPYV 204 (240)
T ss_pred CCCHHHHHHHHhcCCCCcEEEEEEeCCeEEEEEEEeccC-CceeeE-EEeeCCCccccCCHHHHHHHHHHHHHHcCCCeE
Confidence 34555555443 2 233445789999999887443 344455 455699999999999999999999999999988
Q ss_pred EEEc
Q 010815 442 FLLT 445 (500)
Q Consensus 442 ~l~~ 445 (500)
++--
T Consensus 205 YLGY 208 (240)
T PRK01305 205 YLGY 208 (240)
T ss_pred eeeE
Confidence 8844
No 191
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=86.70 E-value=0.59 Score=48.96 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=45.8
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEE-----c-H---HHHHHHHhCCCeEe
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLL-----T-T---RTADWFKSRGFREC 460 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~-----~-~---~a~~fYek~GF~~~ 460 (500)
...|..+.|+|+||+-|+|..-+..+.+|..++-+...+-. + . +=.+||++.||+..
T Consensus 241 aariarvvvhpdyr~dglg~~sv~~a~ewI~eRriPEmr~rkHlvetiaqmarynpffe~~gfkyl 306 (593)
T COG2401 241 AARIARVVVHPDYRADGLGQLSVIAALEWIIERRIPEMRPRKHLVETIAQMARYNPFFEKVGFKYL 306 (593)
T ss_pred hhheeEEEeccccccCccchhHHHHHHHHHHHhhChhhhhhhhHHHHHHHHHhcCchhhhhceeee
Confidence 45789999999999999999999999999988765544332 1 1 22678999999976
No 192
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=86.50 E-value=0.79 Score=46.48 Aligned_cols=50 Identities=18% Similarity=0.308 Sum_probs=41.3
Q ss_pred cCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc-HHHHHHHHhCCCeEecee
Q 010815 414 PECRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT-TRTADWFKSRGFRECSIE 463 (500)
Q Consensus 414 p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~-~~a~~fYek~GF~~~~~~ 463 (500)
..||.||+|..||+.++..|++ .|-..|.+.. -....+|+|+||+..+..
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EHgS~KiavISGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEHGSGKIAVISGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhcCCCceEEEeccchHHHHHhhCeeecChh
Confidence 3699999999999999999986 4666666655 467999999999987654
No 193
>PLN03239 histone acetyltransferase; Provisional
Probab=85.66 E-value=1.7 Score=44.56 Aligned_cols=101 Identities=15% Similarity=0.038 Sum_probs=58.7
Q ss_pred CCcceeecccccccccCCcccHH---HHHHHHHHHHHcCcCccCCHHHHHhhcC--cEEEE-EE---CCeEEEEEEEeee
Q 010815 329 GMGTMVASDLYEGTRTAKVTDLS---GIKQIIQPLVESGALVRRTDEELLKALD--SFYVV-ER---EGQIIACAALFPF 399 (500)
Q Consensus 329 ~~GT~i~~d~~~~iR~a~~~D~~---~I~~L~~~~~~~~~~~~~s~~~~~~~l~--~~~v~-~~---dg~IVG~~~l~~~ 399 (500)
..|..|+++..+.+..+.=.... +-.-|+.+++-.+- .+...++ .|||+ +. +-+++|+-.-...
T Consensus 137 PPG~eIYR~~~~sifEVDG~~~~~yCQnLCLlaKLFLdhK-------tlyyDV~~FlFYVl~e~D~~g~h~vGYFSKEK~ 209 (351)
T PLN03239 137 PPGNEIYRCGDLAMFEVDGFEERIYCQNLCYIAKLFLDHK-------TLYFDVDPFLFYVLCEVDERGFHPVGYYSKEKY 209 (351)
T ss_pred CCCCeEEEeCCEEEEEEeCccchHHHHHHHHHHHHhhcCc-------ceeccccceEEEEEEEecCCceEEEEEeeeccc
Confidence 45777776655445444432222 22223333333322 1112232 24554 33 2467776655422
Q ss_pred cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC
Q 010815 400 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437 (500)
Q Consensus 400 ~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g 437 (500)
+.....+.|+.|.|.||++|+|+.|++..=+.++..|
T Consensus 210 -s~~~~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~Eg 246 (351)
T PLN03239 210 -SDVGYNLACILTFPAHQRKGYGRFLIAFSYELSKKEE 246 (351)
T ss_pred -CCCCCceEEEEecChhhhcchhhhhHhhhhHhhhhcC
Confidence 2233479999999999999999999999888887665
No 194
>PHA01733 hypothetical protein
Probab=83.13 E-value=4.1 Score=36.86 Aligned_cols=119 Identities=15% Similarity=0.126 Sum_probs=63.4
Q ss_pred ccccCCcccHHHHHHHHHHH---HHcCcCc-cC-CHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccC
Q 010815 341 GTRTAKVTDLSGIKQIIQPL---VESGALV-RR-TDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPE 415 (500)
Q Consensus 341 ~iR~a~~~D~~~I~~L~~~~---~~~~~~~-~~-s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~ 415 (500)
.||++|++|+..+..-.++. +-+.... +. -...+...-..++....+|++++..+..+...++.+.++.+..+.=
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~~p~~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~d~~~~vG~pWlV~T~~v 83 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGHSPLALHLSLDVSENVVAFVAPDGSLAGVAGLVEDMGNRVGEIWMVCTPAI 83 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCCCcccchhhhhccccceEEEecCCcEEEEecccccccCCCCceeEEecHHh
Confidence 48999999987666622221 1111111 11 1111222224446667789999999988643345555544554433
Q ss_pred CcCCcHHHHHHHHHHHHHHH-CCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 416 CRGQGQGDKLLDYIEKKAAS-LGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 416 yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
.|-+ ...++.+..+..+ ..+..+.-.+ ..+++|.+.+||+....
T Consensus 84 ~k~~---~~f~re~r~~l~e~~~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~ 132 (153)
T PHA01733 84 EKNP---IALLRGAKWWLPKSRNYDLLWNIVDKRNLVHRKLLRKLGFKGLRY 132 (153)
T ss_pred HhCC---HHHHHHHHHHHHHhccccHHHHhHhcccHHHHHHHHHcCceeecc
Confidence 3322 2333333333332 2344333333 57899999999998643
No 195
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=82.78 E-value=1.5 Score=46.62 Aligned_cols=49 Identities=16% Similarity=0.156 Sum_probs=37.6
Q ss_pred CeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC
Q 010815 388 GQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437 (500)
Q Consensus 388 g~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g 437 (500)
.++||+-.-.... .....+.||.|.|.||++|+|+.|++..=+..+..|
T Consensus 291 ~h~vGyFSKEk~s-~~~~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~eg 339 (450)
T PLN00104 291 CHMVGYFSKEKHS-EEDYNLACILTLPPYQRKGYGKFLIAFSYELSKREG 339 (450)
T ss_pred cEEEEEecccccC-cCCCceEEEEecchhhhcchhheehhheehhhhccC
Confidence 4788876654222 233579999999999999999999998877776654
No 196
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=82.62 E-value=7.4 Score=38.52 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=50.9
Q ss_pred cHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEeceeccchhhhhhhcccCCceEEEEecCCCCCC
Q 010815 420 GQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEMIPEERRKRINLSRNSKYYMKKLLPDTSG 492 (500)
Q Consensus 420 GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~~lp~~~~~~~~~~~~s~~~~kkll~~~~~ 492 (500)
+-...|+..+.+.|+++|+.+|++.+ .....+|++.||...+.- | .|. +..+.+||-+.+.....
T Consensus 21 ~~~~~~~~~~~~~a~~~~~~ki~~~~~~~~~~~~~~~g~~~e~~i--~-----~~f-~g~~~~~~~~~~~~~r~ 86 (266)
T TIGR03827 21 NDVEALIPDLDALAKKEGYTKIIAKVPGSDKPLFEERGYLEEAKI--P-----GYF-NGHDAYFMSKYLDEDRR 86 (266)
T ss_pred ccHHHHHHHHHHHHHHcCCcEEEEEccHHHHHHHHHCCCeEEEec--c-----ccc-CCCceEEEEEcCchHhC
Confidence 34778999999999999999999999 456899999999997654 2 222 33577888888776544
No 197
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=81.70 E-value=1.7 Score=36.45 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=34.3
Q ss_pred cEEEEEECCeEEEEEEEeee----------------------cCCCeEEEEEEEEccCCcCCcHHHHHH
Q 010815 380 SFYVVEREGQIIACAALFPF----------------------FKEKCGEVAAIGVSPECRGQGQGDKLL 426 (500)
Q Consensus 380 ~~~v~~~dg~IVG~~~l~~~----------------------~~~~~~~I~~l~V~p~yRG~GiG~~Ll 426 (500)
++++.+.+.++||++.+... .....++++.++|+|+||+......||
T Consensus 32 h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 32 HLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred EEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 45555544469999987421 112578999999999999998887776
No 198
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=77.64 E-value=13 Score=34.78 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=75.9
Q ss_pred cccHHHHHHHHHHHHHcCcCccCCHHHHHhhcCcEEEE-EECCeEEEEEEEeeec-------------------------
Q 010815 347 VTDLSGIKQIIQPLVESGALVRRTDEELLKALDSFYVV-EREGQIIACAALFPFF------------------------- 400 (500)
Q Consensus 347 ~~D~~~I~~L~~~~~~~~~~~~~s~~~~~~~l~~~~v~-~~dg~IVG~~~l~~~~------------------------- 400 (500)
......+.+++++.+...+. ..+...+..++.+ +.+|++++++++..-.
T Consensus 7 ~~~r~~~e~fI~~~y~~~~~-----A~i~~f~P~ll~l~~~~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~ 81 (179)
T PF12261_consen 7 DPERAEVEQFIRQRYAQAYG-----ATIRHFMPQLLALRDSDGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRP 81 (179)
T ss_pred chhHHHHHHHHHHHHHHHhC-----CcCCccchHHhhhccCCCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCC
Confidence 34566777777665554332 1111222233444 5678999998885211
Q ss_pred --CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEeceeccch
Q 010815 401 --KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECSIEMIPE 467 (500)
Q Consensus 401 --~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~~~~lp~ 467 (500)
.....||+.++.. +.|.++.|+..+.......|++-+.... .+..+++.++|..+.......+
T Consensus 82 v~R~~IvEvGnLAs~----~~g~~~~l~~~l~~~L~~~g~~w~vfTaT~~lr~~~~rlgl~~~~La~Ad~ 147 (179)
T PF12261_consen 82 VSRSQIVEVGNLASF----SPGAARLLFAALAQLLAQQGFEWVVFTATRQLRNLFRRLGLPPTVLADADP 147 (179)
T ss_pred cchhheeEeechhhc----CcccHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHcCCCceeccccCH
Confidence 1145788888855 6899999999999999999998776665 5789999999999886544433
No 199
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=76.55 E-value=18 Score=36.27 Aligned_cols=65 Identities=18% Similarity=0.130 Sum_probs=43.8
Q ss_pred cEEEEEE-CCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 380 SFYVVER-EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 380 ~~~v~~~-dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
.++++.. ||+++|++.+.+....+.+.++..--+|+ -=+|+-..|+..+++.+++.|++.+.+-.
T Consensus 181 ~~~~~~~~dgki~af~~~~~~~~~~~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~g~~~lnLg~ 246 (299)
T PF09924_consen 181 RGFVARVADGKIVAFAIGSPLGGRDGWSIDFEKADPD-APKGIYEFLNVEFAEHLKAEGVEYLNLGF 246 (299)
T ss_dssp EEEEEEE-TTEEEEEEEEEEEE-TTEEEEEEEEE-TT--STTHHHHHHHHHHHHS--TT--EEE---
T ss_pred eEEEEEECCCcEEEEEEEEEccCCccEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhCCceEEEccc
Confidence 5677777 99999999999876445555544555555 45789999999999999988999888533
No 200
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=75.63 E-value=3.4 Score=43.09 Aligned_cols=101 Identities=19% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCcceeecccccccccCCcccHHHHHHHH---HHHHHcCcCccCCHHHHHhhcC--cEEEEEECCeEEEEEEEeeecC--
Q 010815 329 GMGTMVASDLYEGTRTAKVTDLSGIKQII---QPLVESGALVRRTDEELLKALD--SFYVVEREGQIIACAALFPFFK-- 401 (500)
Q Consensus 329 ~~GT~i~~d~~~~iR~a~~~D~~~I~~L~---~~~~~~~~~~~~s~~~~~~~l~--~~~v~~~dg~IVG~~~l~~~~~-- 401 (500)
..|..|+++..+.+..++=.......+-+ .+++-++- .+.-+++ .|||+...+. .||++++....
T Consensus 186 PPG~EIYR~~~iSvfEVDG~~~k~YCQnLCLlaKLFLdhK-------TLYyDvdpFlFYVlte~d~-~G~VGYFSKEK~s 257 (396)
T KOG2747|consen 186 PPGNEIYRKGNISVFEVDGRKQKLYCQNLCLLAKLFLDHK-------TLYYDVDPFLFYVLTECDS-YGCVGYFSKEKES 257 (396)
T ss_pred CCcceeeecCCEEEEEecCcchhHHHHHHHHHHHHHhcCc-------eeEEeccceEEEEEEecCC-cceeeeecccccc
Confidence 45777877777666666544443333322 22232221 1112222 3556543221 12444443222
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC
Q 010815 402 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG 437 (500)
Q Consensus 402 ~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g 437 (500)
.....+.|+.|.|.||++|+|+.|++..=...+..|
T Consensus 258 ~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~E~ 293 (396)
T KOG2747|consen 258 SENYNLACILTLPPYQRKGYGKLLIDFSYELSRREG 293 (396)
T ss_pred ccccceeeeeecChhhhcccchhhhhhhhhhhcccC
Confidence 234569999999999999999999998877776554
No 201
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=72.81 E-value=7.4 Score=42.22 Aligned_cols=127 Identities=14% Similarity=0.181 Sum_probs=83.7
Q ss_pred ccccccccCCcccHHHHHHHHHHHH-HcCcCccC-CHHHHHh-hc---------CcEEEEEEC-CeEEEEEEEee----e
Q 010815 337 DLYEGTRTAKVTDLSGIKQIIQPLV-ESGALVRR-TDEELLK-AL---------DSFYVVERE-GQIIACAALFP----F 399 (500)
Q Consensus 337 d~~~~iR~a~~~D~~~I~~L~~~~~-~~~~~~~~-s~~~~~~-~l---------~~~~v~~~d-g~IVG~~~l~~----~ 399 (500)
.++..|||++..|-+.+..+...+. +.+...++ +...+.. .+ +.+++++++ ++|+|++.-.. +
T Consensus 677 ~~~y~iRPy~~~De~~v~~~ct~my~d~g~~lpf~n~pn~~~d~liggllsls~~lC~v~~de~~~i~gYa~a~~Dvt~F 756 (891)
T KOG3698|consen 677 CMFYDIRPYTIADEEYVSGMCTVMYTDNGELLPFRNAPNFADDNLIGGLLSLSEHLCEVVDDEGHKIVGYASAHFDVTLF 756 (891)
T ss_pred ceeEeeccCccccHHHHHhhhhheeccCceeccCCCCCccccccchhheeccChhheeeeecCCCceeEEeeeecccchh
Confidence 3567899999999999999987765 33332222 2222222 11 346666554 66999876420 0
Q ss_pred c-----------------------CC--------------------------------Ce-EEEEEEEEccCCcCCcHHH
Q 010815 400 F-----------------------KE--------------------------------KC-GEVAAIGVSPECRGQGQGD 423 (500)
Q Consensus 400 ~-----------------------~~--------------------------------~~-~~I~~l~V~p~yRG~GiG~ 423 (500)
. .. +. .++ ..+...+.-.-++.+
T Consensus 757 ~rn~~i~w~~~l~EKY~~~i~p~~~g~~~~~~~e~i~~S~h~~~~~~~~~~~P~~~~~nfPa~v-~~~~~~~a~D~~~~k 835 (891)
T KOG3698|consen 757 SRNFLITWKEKLKEKYRGLIEPIGSGKLTDEYIEFIQNSQHPMDIEEWYPKIPDQIFENFPAWV-ETYFGMDASDAHPMK 835 (891)
T ss_pred hhceeeeeHHHHHHHhhccccccCCchhHHHHHHHHHHccCccchhhccccCcHHHHhcChHHH-hhccccccccchHHH
Confidence 0 00 00 011 234445555678999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEeceec
Q 010815 424 KLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 424 ~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~~~ 464 (500)
++++.++...+..|++.-++.+ ..-++||-++||...+..+
T Consensus 836 ~m~~vll~tL~aNGsrGaf~~V~~dD~~~~~fys~lG~~d~~~~e 880 (891)
T KOG3698|consen 836 KMIQVLLVTLAANGSRGAFLTVAIDDIERQKFYSELGLTDLGLSE 880 (891)
T ss_pred HHHHHHHHHHHhcCCcceeEEechhHHHHHHHHHHhchHHHhHhh
Confidence 9999999999999999888888 3569999999999877653
No 202
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=72.56 E-value=8.4 Score=35.58 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=42.7
Q ss_pred eEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCC
Q 010815 404 CGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRG 456 (500)
Q Consensus 404 ~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~G 456 (500)
.++++.++|.|+.+|.||+..| ..+.-..++.++..-+..+ +...+.+++++
T Consensus 85 VaElGLygVRpDLEGlGi~hs~-r~m~PvLq~LgVPF~FGtVR~al~~Hv~R~~ 137 (196)
T PF02474_consen 85 VAELGLYGVRPDLEGLGISHSM-RVMYPVLQELGVPFGFGTVRHALRNHVERLC 137 (196)
T ss_pred EEEEEEEEeeccccccccchhh-hhhhhHHHhcCCCeecccchHHHHHHHHHHh
Confidence 5789999999999999999876 6778888999999988888 44566666654
No 203
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=68.86 E-value=55 Score=34.27 Aligned_cols=114 Identities=17% Similarity=0.032 Sum_probs=72.0
Q ss_pred CCcccHHHHHHHHHHHHHcCcCccC-CHH---HHHhhc-Cc--EEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCc
Q 010815 345 AKVTDLSGIKQIIQPLVESGALVRR-TDE---ELLKAL-DS--FYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECR 417 (500)
Q Consensus 345 a~~~D~~~I~~L~~~~~~~~~~~~~-s~~---~~~~~l-~~--~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yR 417 (500)
+++++++.++++|..........+. +.+ .+.+.+ +. ++++..++++||++.+... ++..+-.......++.
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va~aL~l~~--~~~LyGRYwG~~~~~~ 287 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVAFALCLRG--DDTLYGRYWGCDEEIP 287 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEEEEEEEEe--CCEEEEeeeccccccc
Confidence 4566789999999876665543222 333 333333 22 4556789999999988743 3444433444556665
Q ss_pred CCcHHHHHHHHHHHHHHHCCCCEEEEEcHHHHHHHHhCCCeEecee
Q 010815 418 GQGQGDKLLDYIEKKAASLGLDMLFLLTTRTADWFKSRGFRECSIE 463 (500)
Q Consensus 418 G~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~a~~fYek~GF~~~~~~ 463 (500)
+. .-..++-..+++|.++|++.+..-+..-.+ ...||+++...
T Consensus 288 ~L-HFe~cYYq~Ie~aI~~Gl~~f~~GaqGEHK--~~RGf~P~~t~ 330 (370)
T PF04339_consen 288 FL-HFELCYYQGIEYAIEHGLRRFEPGAQGEHK--IARGFEPVPTY 330 (370)
T ss_pred Cc-chHHHHHHHHHHHHHcCCCEEECCcchhHH--HHcCCccccce
Confidence 55 355667789999999999987765532222 24699987543
No 204
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=64.86 E-value=13 Score=38.25 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=45.1
Q ss_pred EECCeEEEEEEEeee----cC--CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCE
Q 010815 385 EREGQIIACAALFPF----FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 440 (500)
Q Consensus 385 ~~dg~IVG~~~l~~~----~~--~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~ 440 (500)
....++|||+.-.+. .+ ....+|..+||+++.|+++++=-|++.+-+.+.-.|+.+
T Consensus 142 ~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl~gIfq 203 (421)
T KOG2779|consen 142 KSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNLEGIFQ 203 (421)
T ss_pred ecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhhhhhhh
Confidence 445799999986542 22 256799999999999999999999999999987777653
No 205
>PHA00432 internal virion protein A
Probab=64.40 E-value=19 Score=32.10 Aligned_cols=112 Identities=11% Similarity=-0.025 Sum_probs=54.7
Q ss_pred cccCCcccHHHHHHHHHHH--HHcCcCccCCHHHHHhhcCcEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCC-cC
Q 010815 342 TRTAKVTDLSGIKQIIQPL--VESGALVRRTDEELLKALDSFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPEC-RG 418 (500)
Q Consensus 342 iR~a~~~D~~~I~~L~~~~--~~~~~~~~~s~~~~~~~l~~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~y-RG 418 (500)
|||+|++|++.+ ++...- +-+...... .+. .-..++....+|++++..+-. ....+.++.=+|..-= .-
T Consensus 3 I~paT~~di~~~-~lr~~D~~E~~a~g~~~---~~~-~s~~~~~~~~~G~~~aI~Gn~---G~~vW~v~T~~v~~~~~~~ 74 (137)
T PHA00432 3 IRQTTERDFDVF-NPSFEDILEAKAYGIEP---SFP-PDSECVTLSLDGFVLAIGGNQ---GDQVWFVTSDQVWRLTKKE 74 (137)
T ss_pred cccccHHHHHHc-CCCHHHHHHHHhcCCCC---CCC-CCceEEEEecCCeEEEEecCC---CCceEEEecHHhhhCChhh
Confidence 889999998877 332110 001111000 000 013477778899998877411 1122333333333210 01
Q ss_pred CcHHHHHHHHHHHHHHHCCCCEEEEEc----HHHHHHHHhCCCeEece
Q 010815 419 QGQGDKLLDYIEKKAASLGLDMLFLLT----TRTADWFKSRGFRECSI 462 (500)
Q Consensus 419 ~GiG~~Ll~~l~~~a~~~g~~~I~l~~----~~a~~fYek~GF~~~~~ 462 (500)
+-=.++++....+++.+. +..+.-.+ ..+++|.+.+||+....
T Consensus 75 ~reF~k~~~~~ld~ml~~-yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 75 KREFRKLIMEYRDMMLDQ-YPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred hHHHHHHHHHHHHHHHHh-hhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 112333333434443332 33333333 67899999999998655
No 206
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=59.67 E-value=57 Score=32.99 Aligned_cols=91 Identities=20% Similarity=0.181 Sum_probs=65.8
Q ss_pred cCcEEEEEECCeEEEEEEEeeecCC-----CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC--------CCEEEEE
Q 010815 378 LDSFYVVEREGQIIACAALFPFFKE-----KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG--------LDMLFLL 444 (500)
Q Consensus 378 l~~~~v~~~dg~IVG~~~l~~~~~~-----~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g--------~~~I~l~ 444 (500)
..+-.++...+.+|+.+.+.+..+. -...|..+.|++=|..-|+=..|++|++-++++.. -..+.+.
T Consensus 168 ~~NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll 247 (304)
T PF11124_consen 168 GKNTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLL 247 (304)
T ss_pred CCcceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEE
Confidence 3444444455689999998765332 34679999999999999999999999987776521 1234443
Q ss_pred c------HHHHHHHHhCCCeEec-eeccchh
Q 010815 445 T------TRTADWFKSRGFRECS-IEMIPEE 468 (500)
Q Consensus 445 ~------~~a~~fYek~GF~~~~-~~~lp~~ 468 (500)
+ +...+..++.||...+ ...+++.
T Consensus 248 ~d~YSFD~~~~k~L~~~gF~~i~ss~~ln~~ 278 (304)
T PF11124_consen 248 VDVYSFDKDMKKTLKKKGFKKISSSFKLNEF 278 (304)
T ss_pred EEeeeccHHHHHHHHHCCCeeeecceecCCc
Confidence 3 5679999999999998 5655543
No 207
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.75 E-value=23 Score=34.29 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=33.4
Q ss_pred EEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc--HHHHHHHHh
Q 010815 405 GEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT--TRTADWFKS 454 (500)
Q Consensus 405 ~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~--~~a~~fYek 454 (500)
.-|-.|||+++.|++|.|+.|++++++.=.- ...++.++- ....+|.+|
T Consensus 109 lcILDFyVheS~QR~G~G~~lfdyMl~kE~v-ephQ~a~DrPS~kLl~Fm~k 159 (264)
T KOG4601|consen 109 LCILDFYVHESEQRSGNGFKLFDYMLKKENV-EPHQCAFDRPSAKLLQFMEK 159 (264)
T ss_pred ceEEEEEeehhhhhcCchHHHHHHHHHhcCC-CchheeccChHHHHHHHHHH
Confidence 3455999999999999999999999954221 123344444 245666654
No 208
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=56.13 E-value=45 Score=28.53 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=27.2
Q ss_pred CCeEEEEEEEEccCCcC-CcHHHHHHHHHHH
Q 010815 402 EKCGEVAAIGVSPECRG-QGQGDKLLDYIEK 431 (500)
Q Consensus 402 ~~~~~I~~l~V~p~yRG-~GiG~~Ll~~l~~ 431 (500)
....++..|+|.+.-|| .|++..++..+.+
T Consensus 37 ~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~ 67 (108)
T cd04266 37 EKIAYLDKFAVLPKAQGSDGIADILFNAMLD 67 (108)
T ss_pred CCceEEEEEEEccccccccchHHHHHHHHHH
Confidence 46789999999999997 8999999998886
No 209
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=54.46 E-value=5.8 Score=40.48 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=59.0
Q ss_pred CCcceeecccccccccCCcccHHHHHHHHHH---HHHcCcCccCCHHHHHhhcC--cEEEEEECC----eEEEEEEEeee
Q 010815 329 GMGTMVASDLYEGTRTAKVTDLSGIKQIIQP---LVESGALVRRTDEELLKALD--SFYVVEREG----QIIACAALFPF 399 (500)
Q Consensus 329 ~~GT~i~~d~~~~iR~a~~~D~~~I~~L~~~---~~~~~~~~~~s~~~~~~~l~--~~~v~~~dg----~IVG~~~l~~~ 399 (500)
..|-.|+.|.++.+..++-.-...+.+-+.- ++-.+- .+.-+++ .|||+...+ ++||+-.-..
T Consensus 186 pPG~eiYrD~~iS~~EiDG~~q~~~CrnLCLlsKlFLd~K-------tLYyDVDpflFYvl~~~~~~~~h~vGyFSKEK- 257 (395)
T COG5027 186 PPGNEIYRDKYISFFEIDGRKQRLYCRNLCLLSKLFLDHK-------TLYYDVDPFLFYVLTERGDTGCHLVGYFSKEK- 257 (395)
T ss_pred CCCceeeecCceEEEEEcCcchhhHHHHHHHHHHHHhcCc-------eeEEeccceEEEEEEEcCCcceeeeeeechhh-
Confidence 5677888888888887776655544443322 222211 1111222 355654332 4777655442
Q ss_pred cCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHH
Q 010815 400 FKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAA 434 (500)
Q Consensus 400 ~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~ 434 (500)
.+.....+.|+-+.|.||++|+|+.|++..-...+
T Consensus 258 ~S~~~yNLaCILtLP~yQRrGYG~lLIdFSY~Ls~ 292 (395)
T COG5027 258 ESEQDYNLACILTLPPYQRRGYGKLLIDFSYLLSQ 292 (395)
T ss_pred cccccCceEEEEecChhHhcccceEeeeeeeeccc
Confidence 22344678999999999999999998876544444
No 210
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=49.47 E-value=60 Score=31.84 Aligned_cols=31 Identities=26% Similarity=0.174 Sum_probs=26.4
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHH
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKA 433 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a 433 (500)
..+-|..+.|.+..|++||++.|+..+...-
T Consensus 182 ~~~GIsRIWV~s~~Rr~gIAs~lldva~~~~ 212 (257)
T KOG3014|consen 182 AICGISRIWVSSLRRRKGIASLLLDVARCNF 212 (257)
T ss_pred cEeeeEEEEeehhhhhhhhHHHHHHHHHHhh
Confidence 3466889999999999999999999887654
No 211
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=48.25 E-value=30 Score=35.83 Aligned_cols=56 Identities=13% Similarity=0.284 Sum_probs=38.9
Q ss_pred eEEEEEEEeeec---CCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHH-CCCCEEEEE
Q 010815 389 QIIACAALFPFF---KEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAAS-LGLDMLFLL 444 (500)
Q Consensus 389 ~IVG~~~l~~~~---~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~-~g~~~I~l~ 444 (500)
.++|+..++.++ +.-...|.-+.+.|.||++|+|+.|++.+...-.. -.+--+++.
T Consensus 199 ~~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p~v~DiTVE 258 (403)
T KOG2696|consen 199 AYVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEPTVLDITVE 258 (403)
T ss_pred eeeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCCceeEEEec
Confidence 367777665432 23456788999999999999999999999954433 344444444
No 212
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=47.99 E-value=2.1e+02 Score=25.80 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=65.3
Q ss_pred cccccCCcccHHHHHHHHHHH---HHc----------CcCccCCHHH--HHhhcCcEEEEE-ECCeEEEEEEEeeecC--
Q 010815 340 EGTRTAKVTDLSGIKQIIQPL---VES----------GALVRRTDEE--LLKALDSFYVVE-REGQIIACAALFPFFK-- 401 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~---~~~----------~~~~~~s~~~--~~~~l~~~~v~~-~dg~IVG~~~l~~~~~-- 401 (500)
+.+|++++.|++.+..+-... .+. ....+.+... +.....+.|++. .++++.|++.-...|.
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~RsgHSFvA~~e~~~~~GfvLAQaVWQGd 80 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERSGHSFVAEDEGGELQGFVLAQAVWQGD 80 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCCS--EEEE-ETTEEEEEEEEEEEE-SS
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhccCCcEEEEccCCceeeeeehhHHhcCC
Confidence 358999999999998882211 011 1112233333 333446677776 8899999997765543
Q ss_pred CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEcHH-HHHHHHhCCCeEec
Q 010815 402 EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLTTR-TADWFKSRGFRECS 461 (500)
Q Consensus 402 ~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~~~-a~~fYek~GF~~~~ 461 (500)
.....+..+.+.|. +....-.-|+..+.+.|=+-++-.+.+..++ ...--+.-||...+
T Consensus 81 rptVlV~ri~~~~~-~~~~~~~GLLrAvvKSAYDa~VYEv~l~l~p~l~~A~~a~~~~~~~ 140 (161)
T PF09390_consen 81 RPTVLVRRILLAPG-EPEEVYEGLLRAVVKSAYDAGVYEVHLHLDPELEAAARAEGFRLGG 140 (161)
T ss_dssp SEEEEEEEE---EE-SSHHHHHHHHHHHHHHHHHTT-SEEEE---THHHHHHHHTT----S
T ss_pred CceEEEEEeecCCC-CcHHHHHHHHHHHHHhhhccceEEEEeeCCHHHHHHHhhcccccCC
Confidence 35567777766654 4467888899999999999999888887743 33334556776543
No 213
>COG2935 Putative arginyl-tRNA:protein arginylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=2.9e+02 Score=27.23 Aligned_cols=57 Identities=21% Similarity=0.169 Sum_probs=46.1
Q ss_pred CCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 387 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 387 dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
.|++|+++...... ++..-+. .+-+|++....+|+-.+-+-+.+|++.|...+++--
T Consensus 159 ~G~LvAVavtDvL~-dGlSsVY-~FydPd~s~~SLGt~~iL~~I~~aq~~~l~yvYLGY 215 (253)
T COG2935 159 EGKLVAVAVTDVLP-DGLSSVY-TFYDPDMSKRSLGTLSILDQIAIAQRLGLPYVYLGY 215 (253)
T ss_pred CCcEEEEEeeeccc-CcceeEE-EEeCCChhhhcchHHHHHHHHHHHHHhCCCeEEEEE
Confidence 78999988776443 3444453 445999999999999999999999999999999854
No 214
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=44.80 E-value=1.2e+02 Score=36.60 Aligned_cols=59 Identities=20% Similarity=0.328 Sum_probs=47.9
Q ss_pred EECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 385 EREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 385 ~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
+.+|+++|++.+.+.. .+.+.+..+--+|+. -.|+-..|+..++.+++++|++.+.+.-
T Consensus 427 d~~G~i~af~s~~p~~-~~g~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~G~~~~sLg~ 485 (1094)
T PRK02983 427 DADGQVVALLSFVPWG-RRGLSLDLMRRSPDA-PNGVIELMVAELALEAESLGITRISLNF 485 (1094)
T ss_pred CCCCeEEEEEEEeeeC-CCCEEEEecccCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEech
Confidence 3479999999999854 345667656656664 7899999999999999999999988855
No 215
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=40.47 E-value=79 Score=34.73 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=52.5
Q ss_pred cEEEEEECCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 380 SFYVVEREGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 380 ~~~v~~~dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
.+.+++.+|+|+|++.+.+........++-+--+|+. -+|+-..|+..++.++++.|++++.+--
T Consensus 394 ~va~~~~~g~VvaFa~l~~~~~~~~~SlDlMR~sp~a-p~g~mdfLf~~li~~aKe~G~~~fsLgm 458 (538)
T COG2898 394 PVAAVDNEGEVVAFANLMPTGGKEGYSLDLMRRSPDA-PNGTMDFLFSELILWAKEEGYQRFSLGM 458 (538)
T ss_pred eeeEEcCCCCeEEEEeecccCCcceeEEEeeecCCCC-CchHHHHHHHHHHHHHHHcCCeEEecCC
Confidence 4556677899999999998666666677666666655 4689999999999999999999988855
No 216
>PRK00756 acyltransferase NodA; Provisional
Probab=40.18 E-value=68 Score=29.58 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=35.7
Q ss_pred CeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc
Q 010815 403 KCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT 445 (500)
Q Consensus 403 ~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~ 445 (500)
-.++++.++|.|+..|.||+..+ ..+.-..++.++..-+-.+
T Consensus 84 LVaElGLygVRpDLEGlGi~~S~-r~m~PvLq~LgVPF~FGtV 125 (196)
T PRK00756 84 LVAELGLYGVRPDLEGLGIAHSI-RAMYPVLQELGVPFAFGTV 125 (196)
T ss_pred eEEEeeeeeeccccccccchhhH-HHHHHHHHhcCCCeecccc
Confidence 35789999999999999998766 6777778889998888777
No 217
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=39.43 E-value=68 Score=32.55 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=43.4
Q ss_pred CCeEEEEEEEeee----cC--CCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCE
Q 010815 387 EGQIIACAALFPF----FK--EKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDM 440 (500)
Q Consensus 387 dg~IVG~~~l~~~----~~--~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~ 440 (500)
..++||++.-.+. .+ ....++..+||+++.|++.+.--|+..+.+.|...|+++
T Consensus 142 t~klVaFIsa~p~~v~vRgK~~~~~evNFLCihk~lRsKRltPvLIkEiTRR~n~~~iw~ 201 (451)
T COG5092 142 TQKLVAFISAKPHLVSVRGKRSSVLEVNFLCIHKELRSKRLTPVLIKEITRRANVDGIWR 201 (451)
T ss_pred cceeEEEEecceeEEEEcccccccceEEEEEEehhhhhCccchHHHHHHHHhhhhhhhHH
Confidence 3489999876542 11 246789999999999999999999999999998777654
No 218
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=39.40 E-value=1.3e+02 Score=30.63 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=71.6
Q ss_pred cccccCCcccHHHHHHHHHHHHHc-CcCccCCHHHHHhhcC-----------cEEEE-EECCeEEEEEEEeeecC-----
Q 010815 340 EGTRTAKVTDLSGIKQIIQPLVES-GALVRRTDEELLKALD-----------SFYVV-EREGQIIACAALFPFFK----- 401 (500)
Q Consensus 340 ~~iR~a~~~D~~~I~~L~~~~~~~-~~~~~~s~~~~~~~l~-----------~~~v~-~~dg~IVG~~~l~~~~~----- 401 (500)
.-+|++..+|++++.+|+.+.... .+....+.+++.+++. ..||+ +-+|+|-++-.++....
T Consensus 259 ~GlR~~e~kD~~~v~~L~~~y~~Rfel~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t~i~n 338 (451)
T COG5092 259 EGLRLAEEKDMEDVARLYLEYSRRFELYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFTTIEN 338 (451)
T ss_pred cccchhhhhCHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccceeecC
Confidence 468999999999999999875432 2334456666666651 12334 45788888888764321
Q ss_pred -----CCeEEEEEEEEccCCcCCc------H---HHHHHHHHHHHHHHCCCCEEEEEc-HHHHHHHHhCCCeEec
Q 010815 402 -----EKCGEVAAIGVSPECRGQG------Q---GDKLLDYIEKKAASLGLDMLFLLT-TRTADWFKSRGFRECS 461 (500)
Q Consensus 402 -----~~~~~I~~l~V~p~yRG~G------i---G~~Ll~~l~~~a~~~g~~~I~l~~-~~a~~fYek~GF~~~~ 461 (500)
-..+++...+-+..+..-- + -..|+..++..|+..|+.-..+.+ ....-|...++|..-+
T Consensus 339 ~kykdiq~gYLYYya~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak~~~~DVFNalt~~dN~lFL~dLkFg~Gd 413 (451)
T COG5092 339 KKYKDIQGGYLYYYAGDDQFKDFDPKATKALKTRVAEMVGDAMILAKVEGCDVFNALTMMDNSLFLADLKFGCGD 413 (451)
T ss_pred ccccccceeEEEEEccCccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhhhccchhHHHhcCccCCC
Confidence 1235665555554332210 0 234555556667777776544444 2234566778887654
No 219
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=37.59 E-value=90 Score=26.85 Aligned_cols=29 Identities=14% Similarity=0.169 Sum_probs=21.3
Q ss_pred CCEEEEEc---HHHHHHHHhCCCeEeceeccc
Q 010815 438 LDMLFLLT---TRTADWFKSRGFRECSIEMIP 466 (500)
Q Consensus 438 ~~~I~l~~---~~a~~fYek~GF~~~~~~~lp 466 (500)
+.+|.+.+ ..+.+||+++||+.......+
T Consensus 4 i~Hi~i~v~Dl~~s~~FY~~LG~~~~~~~~~~ 35 (142)
T cd08353 4 MDNVGIVVRDLEAAIAFFLELGLELEGRAEIE 35 (142)
T ss_pred eeeEEEEeCCHHHHHHHHHHcCCEEccccccC
Confidence 44566666 689999999999887655444
No 220
>PHA02769 hypothetical protein; Provisional
Probab=37.44 E-value=27 Score=30.01 Aligned_cols=43 Identities=23% Similarity=0.397 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEc-----HHHHHHHHhCCCeEeceec
Q 010815 422 GDKLLDYIEKKAASLGLDMLFLLT-----TRTADWFKSRGFRECSIEM 464 (500)
Q Consensus 422 G~~Ll~~l~~~a~~~g~~~I~l~~-----~~a~~fYek~GF~~~~~~~ 464 (500)
|..|++.+...+++..-..+.+.. ..+..+|+|.||+.++.+.
T Consensus 94 gd~lvnfl~~l~~k~~~dg~evlwtlgfpdhsnaly~kagfk~vg~ts 141 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKDGFEVLWTLGFPDHSNALYKKAGFKLVGQTS 141 (154)
T ss_pred hHHHHHHHHHHHHHHhcCCeEEEEEecCCCcchhHHhhhhhhHhcccc
Confidence 778888877777654222223322 4689999999999998763
No 221
>cd03173 DUF619-like DUF619 domain of various N-acetylglutamate Kinases and N-acetylglutamate Synthases. DUF619-like: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. This subgroup also includes the DUF619 domain of the FABP N-acetylglutamate kinase (NAGK), the enzyme that catalyzes the second reaction of arginine
Probab=32.45 E-value=2e+02 Score=24.07 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=40.6
Q ss_pred CCeEEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCCCCEEEEEc---HHHHHHH
Q 010815 387 EGQIIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLGLDMLFLLT---TRTADWF 452 (500)
Q Consensus 387 dg~IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g~~~I~l~~---~~a~~fY 452 (500)
++..=|++.+.. ......++..|+|.+.-++.|++..++..+.+.. ..++..+ .+..+||
T Consensus 17 de~y~~~AIvt~-~~~~v~~LdkFav~~~~~~~gv~D~vf~~i~~d~-----~~L~Wrsr~~n~~n~Wy 79 (98)
T cd03173 17 DEPLEGVAIVTY-EGNSIPYLDKFAVSDHLWLNNVTDNIFNLIRKDF-----PSLLWRVRENDANLKWY 79 (98)
T ss_pred cCCccEEEEEec-CCCCCEEEEEEEEcccccccCHHHHHHHHHHhhC-----CeeEEEeCCCCCccceE
Confidence 333444555542 2246889999999999999999999999887552 3444444 3445665
No 222
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=27.73 E-value=65 Score=26.81 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=16.7
Q ss_pred EEEEEc---HHHHHHHHhCCCeEec
Q 010815 440 MLFLLT---TRTADWFKSRGFRECS 461 (500)
Q Consensus 440 ~I~l~~---~~a~~fYek~GF~~~~ 461 (500)
.|.+.+ .++..||+++||+...
T Consensus 3 ~i~l~V~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 3 AVGIVVADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred eEEEEeccHHHHHHHHHHhCceecC
Confidence 345555 6899999999998753
No 223
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=26.82 E-value=6.5e+02 Score=25.54 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHhCCCcEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEec
Q 010815 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIID 184 (500)
Q Consensus 134 ~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTd 184 (500)
.+-.++..=-..|++......+|...|--|-...+.+|+..+.- ++.++.
T Consensus 181 av~~~m~~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~~~vP-v~V~a~ 230 (310)
T PRK08535 181 AVRYFMKDVDKVVVGADAITANGAVINKIGTSQIALAAHEARVP-FMVAAE 230 (310)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEEeHHhHHHHHHHHHHhCCC-EEEecc
Confidence 33444444446677777777899999999999999999999876 444443
No 224
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=26.09 E-value=6.9e+02 Score=25.28 Aligned_cols=48 Identities=10% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHhCCCcEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEE
Q 010815 134 RMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLIC 181 (500)
Q Consensus 134 ~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~a~~lA~~l~Ad~li~ 181 (500)
.+-.++..=-..+++......+|...|=-|-...+.+|+..+.-.++.
T Consensus 176 a~~~~m~~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~ 223 (301)
T TIGR00511 176 AVRYFMKEVDHVVVGADAITANGALINKIGTSQLALAAREARVPFMVA 223 (301)
T ss_pred HHHHHHHhCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEE
Confidence 344444555566787777788999999999999999999998764444
No 225
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=25.70 E-value=1.4e+02 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCeEEEEECCh-HHHHHHHH
Q 010815 8 LVMVQDIAFLHHLGIRFVLVPGTH-VQIDKLLS 39 (500)
Q Consensus 8 ~~i~~dIa~L~~~G~~~VIVHGgG-~~i~~~~~ 39 (500)
..+-..|..+..+--.++|||||. .-.+.++.
T Consensus 18 ~~i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~ 50 (71)
T PF10686_consen 18 ELIWAALDKVHARHPDMVLVHGGAPKGADRIAA 50 (71)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHH
Confidence 345566666666555688999998 44454443
No 226
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.69 E-value=1.6e+02 Score=28.87 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHCCCCEEEEEc-------HHHHHHHHhCCCeEeceecc
Q 010815 425 LLDYIEKKAASLGLDMLFLLT-------TRTADWFKSRGFRECSIEMI 465 (500)
Q Consensus 425 Ll~~l~~~a~~~g~~~I~l~~-------~~a~~fYek~GF~~~~~~~l 465 (500)
-...+++.++..|+++|.+.+ .....||++.||+......+
T Consensus 107 ~~~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~ 154 (239)
T TIGR02990 107 PSSAAVDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCL 154 (239)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeecc
Confidence 345556666788999999998 35799999999999875433
No 227
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=23.94 E-value=16 Score=41.28 Aligned_cols=81 Identities=16% Similarity=0.336 Sum_probs=61.6
Q ss_pred cEEEEEECCe-EEEEEEEeeecCCCeEEEEEEEEccCCcCCcHHHHHHHHHHHHHHHCC-CCEEEEEc-HHHHHHHHhCC
Q 010815 380 SFYVVEREGQ-IIACAALFPFFKEKCGEVAAIGVSPECRGQGQGDKLLDYIEKKAASLG-LDMLFLLT-TRTADWFKSRG 456 (500)
Q Consensus 380 ~~~v~~~dg~-IVG~~~l~~~~~~~~~~I~~l~V~p~yRG~GiG~~Ll~~l~~~a~~~g-~~~I~l~~-~~a~~fYek~G 456 (500)
..+..-.+++ +||-+++.++...+..++-.-+|.-+.|-+|+|..|+.++.++.+..+ +......+ +.++..|++.|
T Consensus 420 ~~~~~~~d~~g~vggi~~r~f~~k~f~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~~i~~~ltyad~~aigyfkkqg 499 (720)
T KOG1472|consen 420 HVMARIKDNEGVVGGICFRPFPEKGFTEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSSTIDYALTYADEGAIGYFKKQG 499 (720)
T ss_pred ccceeeccccccccccccCcCcccCCcceeeccccCcccccccCcCchhhHHHHhhccchHHHHHHhhhhcccccccCcc
Confidence 3444444444 999999988888888899999999999999999999999999998765 22222222 35788888888
Q ss_pred CeEe
Q 010815 457 FREC 460 (500)
Q Consensus 457 F~~~ 460 (500)
|...
T Consensus 500 fs~e 503 (720)
T KOG1472|consen 500 FSKE 503 (720)
T ss_pred chhh
Confidence 8764
No 228
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.36 E-value=5.5e+02 Score=26.41 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=25.2
Q ss_pred HHHcCCeEEEEECCh----HHHHHHHHHcCCCceeeCCc
Q 010815 17 LHHLGIRFVLVPGTH----VQIDKLLSERGHEAKYLGRY 51 (500)
Q Consensus 17 L~~~G~~~VIVHGgG----~~i~~~~~~~g~~~~~~~g~ 51 (500)
+.+.+-+.||+.||= |+....++-+|+.-....|.
T Consensus 71 I~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~ 109 (337)
T COG2247 71 IIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGA 109 (337)
T ss_pred HHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCc
Confidence 344466788888885 56677788899987776653
No 229
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=22.58 E-value=1.4e+02 Score=22.86 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=26.2
Q ss_pred ccHHHHHHHHHHHH----HcCCeEEEEECChHHHHHHH
Q 010815 5 IPWLVMVQDIAFLH----HLGIRFVLVPGTHVQIDKLL 38 (500)
Q Consensus 5 ~~~~~i~~dIa~L~----~~G~~~VIVHGgG~~i~~~~ 38 (500)
.|+.+.+..+..+. ..+.+.|++||-|..+.+..
T Consensus 9 ~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI 46 (70)
T PF01918_consen 9 SPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAI 46 (70)
T ss_dssp S-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHH
Confidence 47777777777777 67889999999998877643
No 230
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=21.98 E-value=4.1e+02 Score=25.58 Aligned_cols=74 Identities=19% Similarity=0.129 Sum_probs=34.3
Q ss_pred CHHHHHHHHhCCCcEEEcCcccCCC-CCeeec-----CHHHHHHHHHHHcCCCEEEEEecCc-ccCCCCcccc---ccCH
Q 010815 131 DVTRMRERLDGGCLVILSNLGYSSS-GEVLNC-----NTYEVATACALAIEADKLICIIDGP-ILDESGHLIR---FLTL 200 (500)
Q Consensus 131 d~~~I~~lL~~g~IPVi~~~~~~~~-g~~~~i-----~~D~~a~~lA~~l~Ad~li~lTdv~-gv~~~g~~I~---~i~~ 200 (500)
...-++++++..-+.|+ |++..+. |--+.+ -++.+|.++|..++. .+++--++ |..+.-.-.+ .++.
T Consensus 5 t~~ei~~~~~~~~~vil-PvGs~EqHGpHLPlgtD~~ia~~~a~~~a~~~~~--~lv~P~i~yG~s~~h~~fpGTisl~~ 81 (237)
T PF02633_consen 5 TWPEIEEALKRDDVVIL-PVGSTEQHGPHLPLGTDTLIAEAVAERAAERLGE--ALVLPPIPYGCSPHHMGFPGTISLSP 81 (237)
T ss_dssp -HHHHHHHHCC-SEEEE-EE--B--BTTTBBTTHHHHHHHHHHHHHHHHHTH--EEE---B--BB-GCCTTSTT-BBB-H
T ss_pred CHHHHHHHhcCCCEEEE-eeecccccCCCccchHHHHHHHHHHHHHHHHCCc--EEEeCCCccccCcccCCCCCeEEeCH
Confidence 35567777666655444 4444433 322333 357788889999986 55665555 5432211111 2444
Q ss_pred HHHHHHH
Q 010815 201 QEADSLI 207 (500)
Q Consensus 201 ~e~~~~~ 207 (500)
+.+..++
T Consensus 82 ~t~~~~l 88 (237)
T PF02633_consen 82 ETLIALL 88 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 231
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=21.97 E-value=1.3e+02 Score=26.50 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=36.9
Q ss_pred CHHHHHHHHhCCCcEEEcCcccCCCCCeeecCHHHHHHHHHHHcCCCEEEEEecCcccCCCCcccc
Q 010815 131 DVTRMRERLDGGCLVILSNLGYSSSGEVLNCNTYEVATACALAIEADKLICIIDGPILDESGHLIR 196 (500)
Q Consensus 131 d~~~I~~lL~~g~IPVi~~~~~~~~g~~~~i~~D~~a~~lA~~l~Ad~li~lTdv~gv~~~g~~I~ 196 (500)
|...|+++.+.+.+-+.+. -++.......++.+++-..+|+||| .|..|+.|+
T Consensus 20 D~~~l~~~~~~~~i~~~g~----------~i~~~~~ie~i~~~~~~k~VIILTD---~D~~Ge~Ir 72 (127)
T COG1658 20 DTASLKRLGDAGVIITNGS----------AINSLETIELIKKAQKYKGVIILTD---PDRKGERIR 72 (127)
T ss_pred HHHHHHHhcCCceEEEcCC----------ccchHHHHHHHHHhhccCCEEEEeC---CCcchHHHH
Confidence 7899999887776544322 1444566778889888888999999 344455443
No 232
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=21.56 E-value=1e+02 Score=28.67 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCeEEEEECChHHHHHHHHH
Q 010815 10 MVQDIAFLHHLGIRFVLVPGTHVQIDKLLSE 40 (500)
Q Consensus 10 i~~dIa~L~~~G~~~VIVHGgG~~i~~~~~~ 40 (500)
+.+-+..|+++|.+-|+|+|||.-...++++
T Consensus 123 l~~~l~~L~~~g~~~i~v~GG~~l~~~~l~~ 153 (200)
T PF01872_consen 123 LEEALRRLKERGGKDILVEGGGSLNGSFLRA 153 (200)
T ss_dssp HHHHHHHHHHTTTSEEEEEEHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCEEEEechHHHHHHHHhC
Confidence 5667788888899999999988777766544
No 233
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=21.31 E-value=1.3e+02 Score=28.70 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCeEEEEECChH-HHHHHHHHcCCCceee
Q 010815 11 VQDIAFLHHLGIRFVLVPGTHV-QIDKLLSERGHEAKYL 48 (500)
Q Consensus 11 ~~dIa~L~~~G~~~VIVHGgG~-~i~~~~~~~g~~~~~~ 48 (500)
.+-++.+++.|++++||.||-. .+.++++++|+..-..
T Consensus 83 ~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~a 121 (212)
T COG0560 83 EELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVA 121 (212)
T ss_pred HHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchhee
Confidence 3445567789999999999976 6688888999886544
Done!