BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010816
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 132/425 (31%), Positives = 216/425 (50%), Gaps = 38/425 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++ NR A H+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V
Sbjct: 6 VKERNRLEA----HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSV 60
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+A+S DG+ + S S ++ W+ + G+ L+GH + G+++ P +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTI 113
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
SAS D ++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+
Sbjct: 114 ASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQ 171
Query: 273 LIRELKGHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA--- 328
L++ L GH V +A S + + + + D T K ++ ++ + + ++G A
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSP 231
Query: 329 -PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ + S SDD T+ LW + Q +TGH VN V F PDGQ +ASAS DK++KLW
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLW 289
Query: 388 NGTTGKFVAVFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMS 433
N G+ + GH V+ + F + R + + S +
Sbjct: 290 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348
Query: 434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493
++S D + + S S D T+K+W+ R +L Q L GH+ V V +SPDG+ +AS D+
Sbjct: 349 GVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 494 VLKLW 498
+KLW
Sbjct: 408 TVKLW 412
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 131/416 (31%), Positives = 211/416 (50%), Gaps = 34/416 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 192
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 193 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVRGVAFSP-----DGQTIASASDDKTV 245
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 246 KLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 303
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ + + + + G A + + S S
Sbjct: 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 364 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 420
Query: 397 VFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
GH V+ + F + R + S + ++S D +
Sbjct: 421 TLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 480
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ S S D T+K+W+ R +L Q L GH+ V V +SPDG+ +AS D+ +KLW
Sbjct: 481 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 535
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 130/416 (31%), Positives = 212/416 (50%), Gaps = 34/416 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 52 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVRGVAFSPDG 110
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 111 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 163
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 164 KLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHS 221
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 282 DDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQ 338
Query: 397 VFRGHVGPVYQIRFE--------------LIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
GH V+ + F + R + S + ++S D +
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ 398
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ S S D T+K+W+ R +L Q L GH+ V+ V +SPD + +AS D+ +KLW
Sbjct: 399 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 128/402 (31%), Positives = 204/402 (50%), Gaps = 47/402 (11%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAFSPDG+ +AS S D TV+LW+ N Q + TGH + V +A+ DG
Sbjct: 216 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVNGVAFRPDG 274
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 275 QTIASASDDKTVKLWN-RNGQLL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 327
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 328 KLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 385
Query: 282 HWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + + G A + + S S
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASAS 445
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 446 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 502
Query: 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456
GH V + F S D + + S S D T+K+W
Sbjct: 503 TLTGHSSSVRGVAF---------------------------SPDGQTIASASDDKTVKLW 535
Query: 457 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ R +L Q L GH+ V+ V +SPDG+ +AS D+ +KLW
Sbjct: 536 N-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 180/361 (49%), Gaps = 46/361 (12%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH+ +V VAF PDG+ +AS S D TV+LW+ N Q + TGH + V +A+S DG
Sbjct: 257 TLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLTGHSSSVWGVAFSPDG 315
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
+ + S S ++ W+ + G+ L+GH + G+++ P + SAS D
Sbjct: 316 QTIASASDDKTVKLWN-RNGQHL-QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTV 368
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
++W+ + + + L+GH+ +V V + DG I + S D T+K+W G+L++ L GH
Sbjct: 369 KLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 426
Query: 282 HWVNSLALS-TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----PERLVSGS 336
V +A S + + + + D T K ++ ++ + + ++G A + + S S
Sbjct: 427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASAS 486
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
DD T+ LW + Q +TGH V V FSPDGQ +ASAS DK++KLWN G+ +
Sbjct: 487 DDKTVKLWNR--NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQ 543
Query: 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456
GH V+ + F S D + + S S D T+K+W
Sbjct: 544 TLTGHSSSVWGVAF---------------------------SPDGQTIASASSDKTVKLW 576
Query: 457 D 457
+
Sbjct: 577 N 577
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 145/316 (45%), Gaps = 26/316 (8%)
Query: 88 PQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT 147
P ++P T+AGHT+AV SV FSP+G LAS S D +++W +
Sbjct: 2 PLGSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 61
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GHK + +AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP---- 116
Query: 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W
Sbjct: 117 -QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 267 ETTQGKLIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313
+T G+ ++ L +G ++ + L L + K Y+ +
Sbjct: 176 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNE 235
Query: 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373
K ++ G + +VSGS+D +++W +K+ ++ GH +V P
Sbjct: 236 KYCIFANFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTEN 291
Query: 374 WVASASF--DKSIKLW 387
+ASA+ DK+IKLW
Sbjct: 292 IIASAALENDKTIKLW 307
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 16 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 72
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 73 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 129
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 130 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 162
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 163 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 213
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 214 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 249
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 250 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 307
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 15 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 70
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 71 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 107
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 108 YVFCCNFNPQSNLIVSGSFDESVRIW 133
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 49
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 95
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 96 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 153 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 185
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 186 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 236
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 237 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 272
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 273 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 31 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 90
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 91 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 144
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 145 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 205 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 264
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 265 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 320
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 321 LENDKTIKLW 330
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 38 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 93
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 94 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 130
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 131 YVFCCNFNPQSNLIVSGSFDESVRIW 156
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 72
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 26 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 85
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 86 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 139
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 140 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 200 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 259
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 260 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 315
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 316 LENDKTIKLW 325
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 90
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 91 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 147
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 148 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 180
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 181 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 231
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 232 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 267
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 268 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 325
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 33 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 88
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 89 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 125
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 126 YVFCCNFNPQSNLIVSGSFDESVRIW 151
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 67
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 97
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 98 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 154
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 155 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 187
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 188 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 238
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 239 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 274
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 275 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 332
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 33 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 92
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 93 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 146
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 147 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 207 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 266
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 267 NFSVTGG---KWIVSGSEDNLVYIWN-LQTKEIVQKLQGHTDVVISTACHPTENIIASAA 322
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 323 LENDKTIKLW 332
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 40 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 95
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 96 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 132
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 133 YVFCCNFNPQSNLIVSGSFDESVRIW 158
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 74
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 5 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 64
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 65 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 118
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 179 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 238
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 239 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 294
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 295 LENDKTIKLW 304
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 13 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 69
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 70 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 126
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 127 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 159
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 160 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 210
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 211 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 246
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 247 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 304
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 12 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 67
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 68 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 104
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 105 YVFCCNFNPQSNLIVSGSFDESVRIW 130
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 46
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 250
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 72 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 9 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 68
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 69 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 122
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 123 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 183 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 242
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 243 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 298
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 299 LENDKTIKLW 308
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 73
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 74 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 130
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 131 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 163
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 164 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 214
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 215 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 250
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 308
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 71
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 72 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 108
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 109 YVFCCNFNPQSNLIVSGSFDESVRIW 134
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 50
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 10 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 69
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 70 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 123
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 124 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 184 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 243
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 244 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 299
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 300 LENDKTIKLW 309
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 74
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 75 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 131
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 132 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 164
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 165 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 215
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 216 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 251
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 252 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 309
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 17 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 72
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 73 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 109
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 110 YVFCCNFNPQSNLIVSGSFDESVRIW 135
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 51
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 119 bits (297), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 15 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 74
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 75 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 128
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 129 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 189 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 248
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 249 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 304
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 305 LENDKTIKLW 314
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 79
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 80 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 136
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 137 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 169
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 170 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 220
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 221 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 256
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 257 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 314
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 22 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 77
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 78 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 114
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 115 YVFCCNFNPQSNLIVSGSFDESVRIW 140
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 56
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 14 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 73
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 74 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 127
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 128 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 188 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 247
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 248 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 303
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 304 LENDKTIKLW 313
Score = 118 bits (296), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 91/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 78
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 79 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 135
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 136 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 168
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 169 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 219
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 220 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 255
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 256 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 313
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 74/146 (50%), Gaps = 27/146 (18%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + +
Sbjct: 21 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV---- 76
Query: 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
+WS+DS LL+S S D TLK+WD+ + K + L GH++
Sbjct: 77 -----------------------AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSN 113
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
VF +++P + SG D +++W
Sbjct: 114 YVFCCNFNPQSNLIVSGSFDESVRIW 139
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK L GH V +V +SP+GE +AS D+++K+W
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIW 55
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L + L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 150/319 (47%), Gaps = 38/319 (11%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
V+ V FSP+G+++ +A+ D +KLW+ + GK + + GH Y
Sbjct: 197 PVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKY--------------- 241
Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481
C + +S + + ++SGS+D+ + +W+++T+++ Q L GH D V + P
Sbjct: 242 --------CIFANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 482 DGEKVASGG--KDRVLKLW 498
+AS D+ +KLW
Sbjct: 293 TENIIASAALENDKTIKLW 311
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 118 bits (295), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LA+ S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L + S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KLW
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 311
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
K + GH + V+ V FSP+G+W+A++S DK IK+W GKF GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+ + + SN+ + CC +++ S L++SGS
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV C+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNMVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKLW
Sbjct: 302 LENDKTIKLW 311
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 151/319 (47%), Gaps = 38/319 (11%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH K ++ + + P S+S D +IW K +SGH L ++ V W
Sbjct: 22 LAGHTKAVSSVKFSP-----NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAW 76
Query: 249 GGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQ 306
D ++ + S D T+K+W+ + GK ++ LKGH ++V + + L +G+FD + +
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 307 YSSPEEMKKAALERYNK----IKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
+ M L ++ + N L VS S D +W+ A + KT +
Sbjct: 137 WDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 196
Query: 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421
V+ V FSP+G+++ +A+ D ++KLW+ + GK + + GH Y
Sbjct: 197 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY--------------- 241
Query: 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481
C + +S + + ++SGS+D+ + +W+++T+++ Q L GH D V + P
Sbjct: 242 --------CIFANFSVTG-GKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHP 292
Query: 482 DGEKVASGG--KDRVLKLW 498
+AS D+ +KLW
Sbjct: 293 TENIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLY 311
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KL+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLY 311
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+ + + SN+ + CC +++ S L++SGS
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 22/223 (9%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C T+ GH+ V F+P + SGS D +VR+WD+ T + H + V + +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHF 160
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
+ DG +VS S G + WD +G+ + ++ + + P + ++A+
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP-----NGKYILAATL 215
Query: 219 DGDARIWDVSLRKCVICLSGH---------TLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269
D ++WD S KC+ +GH +VT KW I +GS+D + +W
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKW-----IVSGSEDNLVYIWNLQ 270
Query: 270 QGKLIRELKGHGHWVNSLALS-TEYALRTGAF--DHTGKQYSS 309
+++++L+GH V S A TE + + A D T K Y S
Sbjct: 271 TKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYKS 313
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 90/310 (29%), Positives = 144/310 (46%), Gaps = 26/310 (8%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
++P T+AGHT+AV SV FSP+G LAS S D +++W +GHK +
Sbjct: 12 VKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGI 71
Query: 154 LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+AWS+D LVS S L+ WD +GK L GH ++ ++ P
Sbjct: 72 SDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-----QSNLI 125
Query: 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK 272
VS S D RIWDV KC+ L H+ V+ V + DG +I + S D ++W+T G+
Sbjct: 126 VSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 273 LIREL-------------KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
++ L +G ++ + L L + K Y+ + K
Sbjct: 186 CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA 245
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
++ G + +VSGS+D +++W +K+ ++ GH +V P +ASA+
Sbjct: 246 NFSVTGG---KWIVSGSEDNLVYIWNLQ-TKEIVQKLQGHTDVVISTACHPTENIIASAA 301
Query: 380 F--DKSIKLW 387
DK+IKL+
Sbjct: 302 LENDKTIKLF 311
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/358 (25%), Positives = 160/358 (44%), Gaps = 69/358 (19%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
F GH V + +S +G+ L S S ++ W GK +SGHK I+ ++W
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAW-- 76
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCT 262
++ VSAS D +IWDVS KC+ L GH+ V C + +I +GS D +
Sbjct: 77 ---SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 133
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322
+++W+ GK ++ L H V+++ + + +L
Sbjct: 134 VRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSL--------------------------- 166
Query: 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VS S D +W+ A + KT + V+ V FSP+G+++ +A+ D
Sbjct: 167 ---------IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN 217
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442
++KLW+ + GK + + GH Y C + +S + +
Sbjct: 218 TLKLWDYSKGKCLKTYTGHKNEKY-----------------------CIFANFSVTG-GK 253
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLKLW 498
++SGS+D+ + +W+++T+++ Q L GH D V + P +AS D+ +KL+
Sbjct: 254 WIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLF 311
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 33/170 (19%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-- 410
K + GH + V+ V FSP+G+W+AS+S DK IK+W GKF GH + + +
Sbjct: 19 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 411 ----------------------ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+ + + SN+ + CC +++ S L++SGS
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY-----VFCC----NFNPQSNLIVSGS 129
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
D ++++WD++T K + LP H+D V AV ++ DG + S D + ++W
Sbjct: 130 FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/307 (24%), Positives = 131/307 (42%), Gaps = 64/307 (20%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GHT++V ++F G+ LAS S D T++LWD + GH + V ++ +G
Sbjct: 145 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
H+VS S+ ++ W+ QTG +GH++W+ V N S S D
Sbjct: 205 DHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWV-----RMVRPNQDGTLIASCSNDQTV 258
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG---------------------VIYTGSQDC 261
R+W V+ ++C L H V C+ W + + +GS+D
Sbjct: 259 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 318
Query: 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
TIK+W+ + G + L GH +WV G H+G ++
Sbjct: 319 TIKMWDVSTGMCLMTLVGHDNWVR------------GVLFHSGGKF-------------- 352
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
++S +DD T+ +W+ + KT + H+ V + F +V + S D
Sbjct: 353 ----------ILSCADDKTLRVWDYKNKRCMKT-LNAHEHFVTSLDFHKTAPYVVTGSVD 401
Query: 382 KSIKLWN 388
+++K+W
Sbjct: 402 QTVKVWE 408
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 149/357 (41%), Gaps = 51/357 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
++GH V V F P + S S D T+++WD T GH + V I++ GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
L S S ++ WD Q G + GH ++ +S P N VSAS+D +
Sbjct: 164 LLASCSADMTIKLWDFQ-GFECIRTMHGHDHNVSSVSIMP---NGD--HIVSASRDKTIK 217
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+W+V CV +GH V V+ DG +I + S D T++VW + EL+ H H
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRH 277
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342
V ++ + E + YSS E A K G L+SGS D T+
Sbjct: 278 VVECISWAPESS------------YSSISE----ATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
+W+ + T + GH V V F G+++ S + DK++++W+ + + H
Sbjct: 322 MWDVSTGMCLMT-LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE 380
Query: 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459
V + F + +++GS D T+KVW+ R
Sbjct: 381 HFVTSLDFHKTAPY---------------------------VVTGSVDQTVKVWECR 410
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 141/324 (43%), Gaps = 54/324 (16%)
Query: 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236
W P+ P LSGH+ +T + + PV VSAS+D ++WD L
Sbjct: 94 WIPRP--PEKYALSGHRSPVTRVIFHPVF-----SVMVSASEDATIKVWDYETGDFERTL 146
Query: 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295
GHT +V + + G ++ + S D TIK+W+ + IR + GH H V+S+++ +
Sbjct: 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSI-----M 201
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
G DH +VS S D T+ +WE KT
Sbjct: 202 PNG--DH-----------------------------IVSASRDKTIKMWEVQTGYCVKT- 229
Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415
TGH++ V V + DG +AS S D+++++W T + A R H ++ C
Sbjct: 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHR--------HVVEC 281
Query: 416 FRY-PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 474
+ P + Y + + LLSGS+D T+K+WD+ T L GH + V
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 475 FAVDWSPDGEKVASGGKDRVLKLW 498
V + G+ + S D+ L++W
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVW 365
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 101/223 (45%), Gaps = 18/223 (8%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH V SV+ P+G + S S D T+++W++ T + TGH+ WV + +
Sbjct: 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 243
Query: 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP---------------V 204
DG + S S ++ W T K L H+ + ISW P
Sbjct: 244 QDGTLIASCSNDQTVRVWVVAT-KECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW-GGDGVIYTGSQDCTI 263
P +S S+D ++WDVS C++ L GH V V + G I + + D T+
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 264 KVWETTQGKLIRELKGHGHWVNSLAL-STEYALRTGAFDHTGK 305
+VW+ + ++ L H H+V SL T + TG+ D T K
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 81/357 (22%), Positives = 144/357 (40%), Gaps = 53/357 (14%)
Query: 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203
+ +GH++ V + + +VS S+ ++ WD +TG L GH + IS
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDIS--- 157
Query: 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCT 262
+ + S S D ++WD +C+ + GH V+ V +G I + S+D T
Sbjct: 158 --FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT 215
Query: 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERY 321
IK+WE G ++ GH WV + + + L + + D T + + + KA L +
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
+ W P S + TG + + G ++ S S D
Sbjct: 276 RHV--------------VECISWAPESSYSSISEATGSETKKS----GKPGPFLLSGSRD 317
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441
K+IK+W+ +TG + GH V + F +
Sbjct: 318 KTIKMWDVSTGMCLMTLVGHDNWVRGVLFH---------------------------SGG 350
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ +LS + D TL+VWD + ++ + L H V ++D+ V +G D+ +K+W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 87/189 (46%), Gaps = 27/189 (14%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T GH E V V + DG +AS S D TVR+W + T+ + H++ V CI+W+
Sbjct: 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 285
Query: 160 AD--------------------GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199
+ G L+SGS+ ++ WD TG L GH W+ G
Sbjct: 286 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRG- 343
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258
V ++ + +S + D R+WD ++C+ L+ H VT + + + TGS
Sbjct: 344 ----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 259 QDCTIKVWE 267
D T+KVWE
Sbjct: 400 VDQTVKVWE 408
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 29/195 (14%)
Query: 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQLV 363
K+++S ++K +E +K+ A E SG + + + P K ++GH+ V
Sbjct: 53 KKWTSVIRLQKKVMELESKL-NEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPV 111
Query: 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
V F P + SAS D +IK+W+ TG F +GH V I F+
Sbjct: 112 TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD------------ 159
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
+LL S S D T+K+WD + + + + GH V +V P+G
Sbjct: 160 ---------------HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 204
Query: 484 EKVASGGKDRVLKLW 498
+ + S +D+ +K+W
Sbjct: 205 DHIVSASRDKTIKMW 219
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
RC T+ H V S+ F + +GS D TV++W+
Sbjct: 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 174/433 (40%), Gaps = 87/433 (20%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 734 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 792
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 793 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 851
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 852 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 960
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 961 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1008
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425
+ F+ DG+ + S+S D I++WN TG +V + H V R
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL--------------- 1052
Query: 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 485
DSR LLS S D T+KVW++ T ++++D H V + S D K
Sbjct: 1053 ------------LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1099
Query: 486 VASGGKDRVLKLW 498
+S D+ K+W
Sbjct: 1100 FSSTSADKTAKIW 1112
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/365 (21%), Positives = 150/365 (41%), Gaps = 60/365 (16%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 605 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 664
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISW--EPVHLNAPCRRFVS 215
+S+D ++ + S +++ WD TGK + H + + + + HL +
Sbjct: 665 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNCCHFTNKSNHL-----LLAT 718
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
S D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 778
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 779 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 816
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 817 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 874
Query: 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454
VA RGH+ V+ + F S D L+ S D T++
Sbjct: 875 VADCRGHLSWVHGVMF---------------------------SPDGSSFLTASDDQTIR 907
Query: 455 VWDIR 459
VW+ +
Sbjct: 908 VWETK 912
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 991 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1049
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1050 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1102
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1103 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1163 HSCAPISVEEGTATHGGWVTDVCFS 1187
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 628 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 688 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 714
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 715 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 771
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
V + ++ + P + +V CC SWSAD ++ +K
Sbjct: 772 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 818
Query: 450 DSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ L ++DI T L ++ GH + D+SP ++LW
Sbjct: 819 NKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
R H VLS A S D + +S S D T ++W + +P+ + GH V C A+
Sbjct: 1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1135
Query: 159 SADGKHLVSGSKAGELQCWDPQTGK--PSGNPLS------GHKKWITGISWEP 203
S DG L +G GE++ W+ G+ S P+S H W+T + + P
Sbjct: 1136 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1188
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 51/360 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 811 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 870
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 871 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 928
Query: 199 ISWEPVHLN--------------------------------APCRRFVS-ASKDGDARIW 225
+ E + +P +V+ +DG +I
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 988
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 989 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1047
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1103
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
S D T +W + P + GH V FS DG +A+ + I++WN + G+ +
Sbjct: 1104 SADKTAKIWSFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1162
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1123 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1182
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1183 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1234
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1235 TVDNLGILYILQV 1247
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 174/433 (40%), Gaps = 87/433 (20%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL---- 154
C T+ GHT +V FSPD LAS S D T+RLWD+ + K K + L
Sbjct: 741 ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER-KSINVKRFFLSSED 799
Query: 155 ----------CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204
C +WSADG ++ +K ++ +D T +GH I + P
Sbjct: 800 PPEDVEVIVKCCSWSADGDKIIVAAK-NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPY 858
Query: 205 -HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCT 262
HL V A +W++ R V GH V V + DG + T S D T
Sbjct: 859 DHLA------VIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 912
Query: 263 IKVWETTQG------KLIRELKGHGHWVNSLALSTE-------YALRTGAFDHTGKQYSS 309
I+VWET + L +E+ ++ L+ + A +TG D Y
Sbjct: 913 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID-----YLP 967
Query: 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNH 365
++ L + E + G +D + + E P R+ GH++ V H
Sbjct: 968 EAQVSCCCLSPH-------LEYVAFGDEDGAIKIIEL-----PNNRVFSSGVGHKKAVRH 1015
Query: 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425
+ F+ DG+ + S+S D I++WN TG +V + H V R
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRL--------------- 1059
Query: 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK 485
DSR LLS S D T+KVW++ T ++++D H V + S D K
Sbjct: 1060 ------------LQDSR-LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATK 1106
Query: 486 VASGGKDRVLKLW 498
+S D+ K+W
Sbjct: 1107 FSSTSADKTAKIW 1119
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/365 (21%), Positives = 148/365 (40%), Gaps = 60/365 (16%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + H++ VLC A
Sbjct: 612 NLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCA 671
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S+D ++ + S +++ WD TGK + H + + H + A+
Sbjct: 672 FSSDDSYIATCSADKKVKIWDSATGKLV-HTYDEHSEQVNC-----CHFTNKSNHLLLAT 725
Query: 218 KDGD--ARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+++W+
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANER 785
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + V LS+E PE+++ + + + + +V+
Sbjct: 786 KSIN-----VKRFFLSSE---------------DPPEDVE--VIVKCCSWSADGDKIIVA 823
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ + L++ S TGH + + FSP A ++LWN +
Sbjct: 824 AKN--KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLK 881
Query: 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454
VA RGH+ V+ + F S D L+ S D T++
Sbjct: 882 VADCRGHLSWVHGVMF---------------------------SPDGSSFLTASDDQTIR 914
Query: 455 VWDIR 459
VW+ +
Sbjct: 915 VWETK 919
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 94/205 (45%), Gaps = 18/205 (8%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P NR ++ GH +AV + F+ DG+ L S S D+ +++W+ T +F H+ V
Sbjct: 998 PNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKD 1056
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
D + L+S S G ++ W+ TG+ + + H+ + + +++ +F S
Sbjct: 1057 FRLLQDSR-LLSWSFDGTVKVWNVITGRIERD-FTCHQGTVLSCA-----ISSDATKFSS 1109
Query: 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLI 274
S D A+IW L + L GH V C + DG++ TG + I++W + G+L+
Sbjct: 1110 TSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Query: 275 REL---------KGHGHWVNSLALS 290
HG WV + S
Sbjct: 1170 HSCAPISVEEGTATHGGWVTDVCFS 1194
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 113/290 (38%), Gaps = 52/290 (17%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269
+R S D +++ + ++ + H V C + D I T S D +K+W++
Sbjct: 635 QRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 694
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
GKL+ H VN T +H
Sbjct: 695 TGKLVHTYDEHSEQVNCCHF-------TNKSNHL-------------------------- 721
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L +GS+DF + LW+ K+ + M GH VNH FSPD + +AS S D +++LW+
Sbjct: 722 -LLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD- 778
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
V + ++ + P + +V CC SWSAD ++ +K
Sbjct: 779 -------VRSANERKSINVKRFFLSSEDPPEDVEVIV--KCC----SWSADGDKIIVAAK 825
Query: 450 DSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ L ++DI T L ++ GH + D+SP ++LW
Sbjct: 826 NKVL-LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 874
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
R H VLS A S D + +S S D T ++W + +P+ + GH V C A+
Sbjct: 1083 RIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF 1142
Query: 159 SADGKHLVSGSKAGELQCWDPQTGK--PSGNPLS------GHKKWITGISWEP 203
S DG L +G GE++ W+ G+ S P+S H W+T + + P
Sbjct: 1143 SLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSP 1195
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/360 (20%), Positives = 135/360 (37%), Gaps = 51/360 (14%)
Query: 79 EKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138
+K++ +F I + GH + FSP V LW+++
Sbjct: 818 DKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNID 877
Query: 139 TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198
++ + C GH +WV + +S DG ++ S ++ W +T K N K+ I
Sbjct: 878 SRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCKNSAIVLKQEIDV 935
Query: 199 ISWEPVHLN--------------------------------APCRRFVS-ASKDGDARIW 225
+ E + +P +V+ +DG +I
Sbjct: 936 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKII 995
Query: 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284
++ + GH AV +++ DG + + S+D I+VW G + L+ H V
Sbjct: 996 ELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETV 1054
Query: 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER-YNKIKGNA--------PERLVSG 335
L + L + +FD T K ++ + +ER + +G + S
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWN----VITGRIERDFTCHQGTVLSCAISSDATKFSST 1110
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
S D T +W + P + GH V FS DG +A+ + I++WN + G+ +
Sbjct: 1111 SADKTAKIWSFDLLS-PLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLL 1169
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKNWVL 154
+ GH V AFS DG LA+G + +R+W+++ + C H WV
Sbjct: 1130 LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVT 1189
Query: 155 CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV 214
+ +S D K LVS G L+ W+ TG S + G + + +H++ R +V
Sbjct: 1190 DVCFSPDSKTLVSA--GGYLKWWNVATGD------SSQTFYTNGTNLKKIHVSPDFRTYV 1241
Query: 215 SASKDGDARIWDV 227
+ G I V
Sbjct: 1242 TVDNLGILYILQV 1254
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/318 (27%), Positives = 153/318 (48%), Gaps = 29/318 (9%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V++ G ++ SGS D T+++W T + GH V WS+ +
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMR 168
Query: 164 H--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
++SGS L+ W+ +TG+ + L GH + +HL+ +R VS S+D
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECI-HTLYGHTSTV-----RCMHLHE--KRVVSGSRDAT 220
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
R+WD+ +C+ L GH AV CV++ G V+ +G+ D +KVW+ + L+GH
Sbjct: 221 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHT 279
Query: 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER---LVSGSDD 338
+ V SL + + +G+ D + + + L + + + LVSG+ D
Sbjct: 280 NRVYSLQFDGIHVV-SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNAD 338
Query: 339 FTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396
T+ +W+ + +T HQ V + F+ + +V ++S D ++KLW+ TG+F+
Sbjct: 339 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN--FVITSSDDGTVKLWDLKTGEFIR 396
Query: 397 VFR-----GHVGPVYQIR 409
G G V++IR
Sbjct: 397 NLVTLESGGSGGVVWRIR 414
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 97/182 (53%), Gaps = 16/182 (8%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C + GH AV V + DGR++ SG+ D V++WD T+T + GH N V + +
Sbjct: 230 QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF 287
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
DG H+VSGS ++ WD +TG + L+GH+ +G+ + VS +
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCI-HTLTGHQSLTSGMELKD-------NILVSGNA 337
Query: 219 DGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIR 275
D +IWD+ +C+ L G H AVTC+++ + VI T S D T+K+W+ G+ IR
Sbjct: 338 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVI-TSSDDGTVKLWDLKTGEFIR 396
Query: 276 EL 277
L
Sbjct: 397 NL 398
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 126/304 (41%), Gaps = 64/304 (21%)
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIKVWET 268
R VS S D ++W KC+ L GHT V W D +I +GS D T+KVW
Sbjct: 131 RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNA 186
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G+ I L GH V + L
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLH-------------------------------------- 208
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+R+VSGS D T+ +W+ + M GH V V + DG+ V S ++D +K+W+
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWD 265
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY----------CVVDMSCCMSLYS-W 437
T + +GH VY ++F+ I+ + C+ ++ SL S
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM 325
Query: 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADEVFAVDWSPDGEKVASGGKDRV 494
+L+SG+ DST+K+WDI+T + Q L G H V + ++ + V + D
Sbjct: 326 ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNF--VITSSDDGT 383
Query: 495 LKLW 498
+KLW
Sbjct: 384 VKLW 387
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 45/324 (13%)
Query: 148 GHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
GH + V+ C+ + G +VSGS L+ W TGK L GH TG W
Sbjct: 116 GHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCL-RTLVGH----TGGVWSSQMR 168
Query: 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266
+ +S S D ++W+ +C+ L GHT V C+ V+ +GS+D T++VW
Sbjct: 169 DNI---IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV-SGSRDATLRVW 224
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY-NKIK 325
+ G+ + L GH V + + +GA+D K + E L+ + N++
Sbjct: 225 DIETGQCLHVLMGHVAAVRCVQYDGRRVV-SGAYDFMVKVWDPETETCLHTLQGHTNRVY 283
Query: 326 GNAPE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
+ +VSGS D ++ +W+ T +TGHQ L + + + + S + D +
Sbjct: 284 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHT-LTGHQSLTSGMELKDN--ILVSGNADST 340
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
+K+W+ TG+ + +G P + C ++ NF
Sbjct: 341 VKIWDIKTGQCLQTLQG---P--NKHQSAVTCLQFNKNF--------------------- 374
Query: 444 LLSGSKDSTLKVWDIRTQKLKQDL 467
+++ S D T+K+WD++T + ++L
Sbjct: 375 VITSSDDGTVKLWDLKTGEFIRNL 398
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG---HKNWVLCI 156
C T+ GH L+ L SG+ D+TV++WD+ T + G H++ V C+
Sbjct: 311 CIHTLTGHQS--LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL 368
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
++ + +++ S G ++ WD +TG+ N ++ G+ W
Sbjct: 369 QFNKN--FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 412
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 129/290 (44%), Gaps = 74/290 (25%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270
++ VS +D +IWD + +C L+GHT +V C+++ + VI TGS D T++VW+
Sbjct: 144 QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202
Query: 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330
G+++ L H V L R+N
Sbjct: 203 GEMLNTLIHHCEAVLHL--------------------------------RFNN------G 224
Query: 331 RLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+V+ S D ++ +W+ A R + GH+ VN V F D +++ SAS D++IK+WN
Sbjct: 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWN 282
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+T +FV GH I C +Y RL++SGS
Sbjct: 283 TSTCEFVRTLNGHKRG--------IACLQYR---------------------DRLVVSGS 313
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
D+T+++WDI + L GH + V + + D +++ SG D +K+W
Sbjct: 314 SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVW 361
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 135/308 (43%), Gaps = 70/308 (22%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178
D +++ SG D T+++WD NT TGH VLC+ + D + +++GS ++ WD
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWD 199
Query: 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW------DVSLRKC 232
TG+ N L H + + +HL V+ SKD +W D++LR+
Sbjct: 200 VNTGEML-NTLIHHCEAV-------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRV 251
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ GH AV V + D I + S D TIKVW T+ + +R L GH +
Sbjct: 252 LV---GHRAAVNVVDF-DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-------- 299
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352
A L+ +++ +VSGS D T+ LW+
Sbjct: 300 -----------------------ACLQYRDRL-------VVSGSSDNTIRLWDIECGACL 329
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN--------GTTGKF-VAVFRGHVG 403
+ + GH++LV + F D + + S ++D IK+W+ G + H G
Sbjct: 330 RV-LEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG 386
Query: 404 PVYQIRFE 411
V++++F+
Sbjct: 387 RVFRLQFD 394
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 31/128 (24%)
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
D Q + S D +IK+W+ T + + GH G V C +Y
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL--------CLQY------------ 181
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 490
D R++++GS DST++VWD+ T ++ L H + V + + + + +
Sbjct: 182 ---------DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCS 230
Query: 491 KDRVLKLW 498
KDR + +W
Sbjct: 231 KDRSIAVW 238
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493
+Y D + ++SG +D+T+K+WD T + K+ L GH V + + D + +G D
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDS 193
Query: 494 VLKLW 498
+++W
Sbjct: 194 TVRVW 198
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 97/379 (25%), Positives = 162/379 (42%), Gaps = 87/379 (22%)
Query: 103 TIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCI 156
T+ HT+ V ++A D + S S D ++ LW L + + TGH ++V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
S+DG+ +SGS GEL+ WD G S GH K + ++ + R+ VSA
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG-VSTRRFVGHTKDVLSVA-----FSLDNRQIVSA 490
Query: 217 SKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGDGV---IYTGSQDCTIKVWETT 269
S+D ++W+ +L +C +S GH V+CV++ + + I + S D T+KVW +
Sbjct: 491 SRDRTIKLWN-TLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS 549
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
KL L GH +V+++A+S + +L
Sbjct: 550 NCKLRSTLAGHTGYVSTVAVSPDGSL---------------------------------- 575
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
SG D + LW+ A K K +++ + FSP+ W+ +A+ + IK+W+
Sbjct: 576 --CASGGKDGVVLLWDLAEGK--KLYSLEANSVIHALCFSPNRYWLCAAT-EHGIKIWDL 630
Query: 390 TTGKFVAVFR----------GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
+ V + + GP R ++IYC + +WSA
Sbjct: 631 ESKSIVEDLKVDLKAEAEKADNSGPAATKR-KVIYC-----------------TSLNWSA 672
Query: 440 DSRLLLSGSKDSTLKVWDI 458
D L SG D ++VW I
Sbjct: 673 DGSTLFSGYTDGVIRVWGI 691
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 111/271 (40%), Gaps = 66/271 (24%)
Query: 235 CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
+ HT VT + D +I + S+D +I +W+ T+ G R L GH H+V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347
LS++ G F +SGS D + LW+ A
Sbjct: 437 VLSSD-----GQF-------------------------------ALSGSWDGELRLWDLA 460
Query: 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407
+ R GH + V V FS D + + SAS D++IKLWN + G G
Sbjct: 461 AGVSTR-RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG---- 515
Query: 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467
+ + C R+ N ++S S D T+KVW++ KL+ L
Sbjct: 516 -HRDWVSCVRFSPNTL-----------------QPTIVSASWDKTVKVWNLSNCKLRSTL 557
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
GH V V SPDG ASGGKD V+ LW
Sbjct: 558 AGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 146/379 (38%), Gaps = 97/379 (25%)
Query: 148 GHKNWVLCIAWSADGKHL-VSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGISWE 202
H + V IA D + VS S+ + W D + + L+GH ++ E
Sbjct: 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV-----E 434
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261
V L++ + +S S DG+ R+WD++ GHT V V + D I + S+D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 262 TIKVWETT-QGKLIRELKGHGH--WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318
TIK+W T + K G GH WV+ + S P ++
Sbjct: 495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFS-------------------PNTLQPT-- 533
Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378
+VS S D T+ +W + K ++ + GH V+ V SPDG AS
Sbjct: 534 -------------IVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLCASG 579
Query: 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438
D + LW+ GK +Y S + + C S
Sbjct: 580 GKDGVVLLWDLAEGK------------------KLYSLEANSVIHAL-----CFS----- 611
Query: 439 ADSRLLLSGSKDSTLKVWDIRT----QKLKQDLPGHADEV---------------FAVDW 479
+R L + + +K+WD+ + + LK DL A++ +++W
Sbjct: 612 -PNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670
Query: 480 SPDGEKVASGGKDRVLKLW 498
S DG + SG D V+++W
Sbjct: 671 SADGSTLFSGYTDGVIRVW 689
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 32/169 (18%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+ +T+AGHT V +VA SPDG ASG D V LWDL ++ + + + + +
Sbjct: 552 KLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHALCF 610
Query: 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218
S + L + ++ G ++ WD ++ K + + V L A + A
Sbjct: 611 SPNRYWLCAATEHG-IKIWDLES-----------KSIVEDLK---VDLKAEAEK---ADN 652
Query: 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266
G A + RK + C T + W DG +++G D I+VW
Sbjct: 653 SGPA----ATKRKVIYC--------TSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 26/194 (13%)
Query: 331 RLVSGSDDFTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
++VS S D T+ W P + P R+ GH V+ V S +G + SAS+D
Sbjct: 30 KVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWDH 89
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPSNFYCVVDMSCCMSL--- 434
S++LWN G+ F GH V + F +++ R + V C +L
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 435 ----------YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
+S S D+ +++SG D+ +KVWD+ T +L DL GH + V +V SPDG
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS 209
Query: 485 KVASGGKDRVLKLW 498
AS KD V +LW
Sbjct: 210 LCASSDKDGVARLW 223
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 5/188 (2%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH+ V VA S +G S S D ++RLW+L +K GH VL +A+S D +
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
+VSG + L+ W+ + H W++ + + P L+AP VS D +
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSP-SLDAPV--IVSGGWDNLVK 179
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGH 282
+WD++ + V L GHT VT V DG + S +D ++W+ T+G+ + E+ G
Sbjct: 180 VWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GA 238
Query: 283 WVNSLALS 290
+N + S
Sbjct: 239 PINQICFS 246
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 91/372 (24%), Positives = 161/372 (43%), Gaps = 83/372 (22%)
Query: 104 IAGHTEAVLSVAF--SPD-GRQLASGSGDTTVRLWDLNTQTPMFKCT---------GHKN 151
+ GH V S+A +P+ ++ S S D T+ W N +C+ GH
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+V +A S +G VS S L+ W+ Q G+ L GH K + +++ P + R
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL-GHTKDVLSVAFSPDN-----R 122
Query: 212 RFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWG---GDGVIYTGSQDCTIKVW 266
+ VS +D R+W+V +C+ LS HT V+CV++ VI +G D +KVW
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVW 181
Query: 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326
+ G+L+ +LKGH ++V S+ +S + +L K ++ KG
Sbjct: 182 DLATGRLVTDLKGHTNYVTSVTVSPDGSL-------------CASSDKDGVARLWDLTKG 228
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386
A + +G+ +N + FSP+ W+ +A+ +K I++
Sbjct: 229 EALSEMAAGAP-------------------------INQICFSPNRYWMCAAT-EKGIRI 262
Query: 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446
++ + + P +Q +++ P C+S+ +WSAD L S
Sbjct: 263 FDLENKDIIV----ELAPEHQGSKKIV-----PE----------CVSI-AWSADGSTLYS 302
Query: 447 GSKDSTLKVWDI 458
G D+ ++VW +
Sbjct: 303 GYTDNVIRVWGV 314
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIA 157
+C GHT+ VLSVAFSPD RQ+ SG D +R+W++ + G H +WV C+
Sbjct: 100 QCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVR 159
Query: 158 WSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+S D +VSG ++ WD TG+ + L GH ++T ++ P + C S
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-LKGHTNYVTSVTVSPD--GSLC---AS 213
Query: 216 ASKDGDARIWDVS 228
+ KDG AR+WD++
Sbjct: 214 SDKDGVARLWDLT 226
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 147/375 (39%), Gaps = 91/375 (24%)
Query: 145 KCTGHKNWVLCIAWS---ADGKHLVSGSKAGELQCWDPQTGKPS-----GNP---LSGHK 193
+ TGH+ WV +A +VS S+ L W P + S G P L GH
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252
+++ ++ L+ VSAS D R+W++ +C GHT V V + D
Sbjct: 68 AFVSDVA-----LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 253 VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310
I +G +D ++VW +G+ + L H WV+ + S
Sbjct: 123 QIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSL----------------- 164
Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370
+AP +VSG D + +W+ A + T + GH V V SP
Sbjct: 165 ----------------DAPV-IVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSP 206
Query: 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
DG AS+ D +LW+ T G+ ++ P+ QI CF
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSEMAAG-APINQI------CF-------------- 245
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGH------ADEVFAVDWSPDG 483
+ +R + + + ++++D+ + + +L P H E ++ WS DG
Sbjct: 246 --------SPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVSIAWSADG 297
Query: 484 EKVASGGKDRVLKLW 498
+ SG D V+++W
Sbjct: 298 STLYSGYTDNVIRVW 312
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/365 (20%), Positives = 145/365 (39%), Gaps = 60/365 (16%)
Query: 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
N + HT+AV FS DG+++AS D T++++ T + + H++ VLC A
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCA 670
Query: 158 WSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
+S D + + + S +++ W+ TG+ + H + + H + A+
Sbjct: 671 FSTDDRFIATCSVDKKVKIWNSMTGELV-HTYDEHSEQVNC-----CHFTNSSHHLLLAT 724
Query: 218 KDGDA--RIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI 274
D ++WD++ ++C + GHT +V ++ D ++ + S D T+K+W+ T
Sbjct: 725 GSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANER 784
Query: 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334
+ + ++N P+E + + + +V+
Sbjct: 785 KSINVKQFFLN---------------------LEDPQE-DMEVIVKCCSWSADGARIMVA 822
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394
+ +FL++ S TGH + + FSP A ++LWN +
Sbjct: 823 AKN--KIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK 880
Query: 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLK 454
VA RGH+ V+ + F S D L+ S D T++
Sbjct: 881 VADCRGHLSWVHGVMF---------------------------SPDGSSFLTSSDDQTIR 913
Query: 455 VWDIR 459
+W+ +
Sbjct: 914 LWETK 918
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 120/460 (26%), Positives = 175/460 (38%), Gaps = 99/460 (21%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD----------------LNTQTP 142
C T+ GHT +V FSPD + LAS S D T++LWD LN + P
Sbjct: 740 ECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDP 799
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
+ V C +WSADG ++ +K ++ +D T G +GH I +
Sbjct: 800 Q---EDMEVIVKCCSWSADGARIMVAAK-NKIFLFDIHTSGLLGEIHTGHHSTIQYCDFS 855
Query: 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDC 261
P + A V A +W+ R V GH V V + DG + T S D
Sbjct: 856 PQNHLA-----VVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQ 910
Query: 262 TIKVWETTQG------KLIRELKGHGHWVNSLALSTEYALR-------TGAFDH-TGKQY 307
TI++WET + L +E+ + L+ ++ R TG D+ T Q
Sbjct: 911 TIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQV 970
Query: 308 S----SP---------EEMKKAALERYNK---------------IKGNAPER-LVSGSDD 338
S SP E LE N I+ A E+ L+S SDD
Sbjct: 971 SCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDD 1030
Query: 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398
+ +W + K R GHQ+ V + + + S SFD ++K+WN TG F
Sbjct: 1031 AEIQVWNWQLDKCIFLR--GHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNKEKDF 1087
Query: 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
H G V +SC S D+ S S D T K+W
Sbjct: 1088 VCHQGTV----------------------LSC-----DISHDATKFSSTSADKTAKIWSF 1120
Query: 459 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+L GH V +S D +A+G + +++W
Sbjct: 1121 DLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIW 1160
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+R+ S D T+ +++ A + + + H+ V FS D +++A+ S DK +K+WN
Sbjct: 634 QRIASCGADKTLQVFK-AETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNS 692
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
TG+ V + H V +CC ++ S+ LL +GS
Sbjct: 693 MTGELVHTYDEHSEQV-----------------------NCCH--FTNSSHHLLLATGSS 727
Query: 450 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
D LK+WD+ ++ + + GH + V +SPD + +AS D LKLW
Sbjct: 728 DCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/270 (28%), Positives = 121/270 (44%), Gaps = 26/270 (9%)
Query: 239 HTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALR 296
HT AV + DG I + D T++V++ G+ + E+K H V A ST+ +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 297 TGAFDHTGKQYSSPE-EMKKAALERYNKIK----GNAPERLV--SGSDDFTMFLWEPAVS 349
T + D K ++S E+ E ++ N+ L+ +GS D + LW+
Sbjct: 680 TCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN-Q 738
Query: 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
K+ + M GH VNH FSPD + +AS S D ++KLW+ T+ A R + V Q
Sbjct: 739 KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS----ANERKSIN-VKQFF 793
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-P 468
L P V+ + CC SWSAD ++ +K+ ++DI T L ++
Sbjct: 794 LNL----EDPQEDMEVI-VKCC----SWSADGARIMVAAKNKIF-LFDIHTSGLLGEIHT 843
Query: 469 GHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
GH + D+SP ++LW
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELW 873
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 84/353 (23%), Positives = 135/353 (38%), Gaps = 63/353 (17%)
Query: 76 VSVEKVLSIVYQPQAVF--------RIRPVNRCSATIAGHTEAVLSVA-FSPDGRQLASG 126
V +++ + +V+Q V R++ +N + I TEA +S SP + +A G
Sbjct: 926 VMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186
+ + + +L HK V I ++AD K L+S S E+Q W+ Q K
Sbjct: 986 DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Query: 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAV 243
L GH++ + R +S S DG ++W++ + K +C G L+
Sbjct: 1046 --LRGHQETVKDFRL------LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC 1097
Query: 244 TCVKWGGDGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
D ++ S D T K+W + EL+GH V A S + L D
Sbjct: 1098 DI---SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD- 1153
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
N R+ + S+ + L P + T H
Sbjct: 1154 ------------------------NGEIRIWNVSNGELLHLCAPLSEEGAAT----HGGW 1185
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF--------RGHVGPVYQ 407
V + FSPDG+ + SA IK WN TG+ F + HV P ++
Sbjct: 1186 VTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFK 1236
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLC 155
+ GH V AFS D LA+G + +R+W+++ + C H WV
Sbjct: 1129 LRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTD 1188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ +S DGK L+S G ++ W+ TG+ S + G + + +H++ + +V+
Sbjct: 1189 LCFSPDGKMLISA--GGYIKWWNVVTGE------SSQTFYTNGTNLKKIHVSPDFKTYVT 1240
Query: 216 ASKDG 220
G
Sbjct: 1241 VDNLG 1245
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 86/359 (23%), Positives = 136/359 (37%), Gaps = 75/359 (20%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207
GH N VLC+ W D + +VS S+ G++ WD T + ++ W+ ++ P
Sbjct: 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE-HAVTMPCTWVMACAYAPSGCA 120
Query: 208 APCRRFVSASKDGDARIW--------DVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259
C D ++ +++ +K + + + L+ C D I T S
Sbjct: 121 IAC-----GGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSA-CSFTNSDMQILTASG 174
Query: 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319
D T +W+ G+L++ GHG V L L+ P E
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLA-------------------PSET------ 209
Query: 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379
GN VSG D +W+ S Q H+ VN V + P G AS S
Sbjct: 210 ------GNT---FVSGGCDKKAMVWDMR-SGQCVQAFETHESDVNSVRYYPSGDAFASGS 259
Query: 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439
D + +L++ + VA++ + +I+ S +S
Sbjct: 260 DDATCRLYDLRADREVAIYS---------KESIIFG----------------ASSVDFSL 294
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
RLL +G D T+ VWD+ L GH + V + SPDG SG D L++W
Sbjct: 295 SGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 81/354 (22%), Positives = 148/354 (41%), Gaps = 31/354 (8%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKV---LSIVYQPQAVFRIRP----VNRCSATIAGHTEA 110
+ ++E L L S E K +E+ L V Q R+ V + T+ GH
Sbjct: 7 LHENETLASLKSEAESLKGKLEEERAKLHDVELHQVAERVEALGQFVMKTRRTLKGHGNK 66
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
VL + + D R++ S S D V +WD T T WV+ A++ G + G
Sbjct: 67 VLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126
Query: 171 AGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
+ + P T + N ++ H +++ S+ + + ++AS DG +
Sbjct: 127 DNKCSVY-PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-----QILTASGDGTCAL 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
WDV + + GH V C+ +G D VW+ G+ ++ + H
Sbjct: 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE 240
Query: 282 HWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP-------ERLV 333
VNS+ + A +G+ D T + Y + + A + + I G + L
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+G +D+T+ +W+ + + + GH+ V+ + SPDG S S+D ++++W
Sbjct: 301 AGYNDYTINVWD-VLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 462 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
K ++ L GH ++V +DW D ++ S +D + +W
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW 91
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
+ I F ++ R Y ++ C ++ S+S RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
G D VWD L GH + V + + DG VA+G D LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/353 (22%), Positives = 144/353 (40%), Gaps = 35/353 (9%)
Query: 58 ISDHELLVPLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLS 113
+S+ + L L+ K + Q I PV R T+ GH + +
Sbjct: 1 MSELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYA 60
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173
+ + D R L S S D + +WD T + +WV+ A++ G ++ G
Sbjct: 61 MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 174 LQCWDPQTGKPS---GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARI 224
++ +T + + L+GH +++ C RF V++S D +
Sbjct: 121 CSIYNLKTREGNVRVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCAL 168
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHW 283
WD+ + +GHT V + D ++ +G+ D + K+W+ +G + GH
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 284 VNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSG 335
+N++ A TG+ D T + + + + N I G + L++G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288
Query: 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
DDF +W+ A+ + GH V+ + + DG VA+ S+D +K+WN
Sbjct: 289 YDDFNCNVWD-ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
+ I F ++ R Y ++ C ++ S+S RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
G D VWD L GH + V + + DG VA+G D LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 25 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 84
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 85 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 144
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 145 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 192
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 193 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 252
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 253 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 311
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 312 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 62 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 121
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 122 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 179
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 180 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 238
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
+ I F ++ R Y ++ C ++ S+S RLLL+
Sbjct: 239 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 298
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
G D VWD L GH + V + + DG VA+G D LK+W
Sbjct: 299 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
+ I F ++ R Y ++ C ++ S+S RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
G D VWD L GH + V + + DG VA+G D LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 156/367 (42%), Gaps = 73/367 (19%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 145
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 205
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 206 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 229
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 285
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
GK + V +++ E+I + + C SL +WSAD + L +G D+
Sbjct: 286 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 328
Query: 452 TLKVWDI 458
++VW +
Sbjct: 329 LVRVWQV 335
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 111/266 (41%), Gaps = 61/266 (22%)
Query: 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316
G+++ + T Q L LKGH WV +A + ++
Sbjct: 14 GTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQF----------------------- 50
Query: 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDG 372
P+ ++S S D T+ +W+ + P+ + GH V+ V S DG
Sbjct: 51 ------------PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDG 98
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPS------- 420
Q+ S S+D +++LW+ TTG F GH V + F +++ R +
Sbjct: 99 QFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTL 158
Query: 421 --NFYCVVD------MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD 472
Y V D +SC +S ++ + +++S D +KVW++ KLK + GH
Sbjct: 159 GVCKYTVQDESHSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 473 EVFAVDWSPDGEKVASGGKDRVLKLW 498
+ V SPDG ASGGKD LW
Sbjct: 217 YLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 58/334 (17%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-----CLSGHTLAV 243
L GH W+T I+ P + +SAS+D +W ++ + L GH+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDM----ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFD 301
+ V DG +GS D T+++W+ T G R GH V S+A S++ + +G+ D
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 302 HTGK--------QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
T K +Y+ +E + ++ +VS D + +W A K K
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-K 208
Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
T GH +N V SPDG AS D LW+ GK + G ++I
Sbjct: 209 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---------DII 259
Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD----IRTQKLKQDLPG 469
+ N Y W L + ++K+WD I +LKQ++
Sbjct: 260 NALCFSPNRY-------------W-------LCAATGPSIKIWDLEGKIIVDELKQEVIS 299
Query: 470 HAD-----EVFAVDWSPDGEKVASGGKDRVLKLW 498
+ + ++ WS DG+ + +G D ++++W
Sbjct: 300 TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 49/126 (38%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----------CTGHKNWVLC 155
GHT + +V SPDG ASG D LWDLN ++ C + LC
Sbjct: 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272
Query: 156 ---------------------------------------IAWSADGKHLVSGSKAGELQC 176
+AWSADG+ L +G ++
Sbjct: 273 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 332
Query: 177 WDPQTG 182
W G
Sbjct: 333 WQVTIG 338
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 76/340 (22%), Positives = 139/340 (40%), Gaps = 35/340 (10%)
Query: 71 LEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSA----TIAGHTEAVLSVAFSPDGRQLASG 126
L+ K + Q I PV R T+ GH + ++ + D R L S
Sbjct: 14 LKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSA 73
Query: 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS- 185
S D + +WD T + +WV+ A++ G ++ G ++ +T + +
Sbjct: 74 SQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133
Query: 186 --GNPLSGHKKWITGISWEPVHLNAPCRRF------VSASKDGDARIWDVSLRKCVICLS 237
L+GH +++ C RF V++S D +WD+ + +
Sbjct: 134 RVSRELAGHTGYLS------------CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFT 181
Query: 238 GHTLAVTCVKWGGDGVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA-LSTEYAL 295
GHT V + D ++ +G+ D + K+W+ +G + GH +N++ A
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAF 241
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWEPAV 348
TG+ D T + + + + N I G + L++G DDF +W+ A+
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD-AL 300
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388
+ GH V+ + + DG VA+ S+D +K+WN
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 114/292 (39%), Gaps = 32/292 (10%)
Query: 236 LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEY 293
L GH + + WG D ++ + SQD + +W++ + + WV + A + +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA----------PERLVSGSDDFTMFL 343
+ G D+ Y+ + R ++ G+ ++V+ S D T L
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSR--ELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403
W+ +Q T H V + +PD + S + D S KLW+ G F GH
Sbjct: 169 WDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES 227
Query: 404 PVYQIRFE---------------LIYCFRYPSNF--YCVVDMSCCMSLYSWSADSRLLLS 446
+ I F ++ R Y ++ C ++ S+S RLLL+
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287
Query: 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
G D VWD L GH + V + + DG VA+G D LK+W
Sbjct: 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 156/367 (42%), Gaps = 73/367 (19%)
Query: 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWVLC 155
T+ GH V +A +P + S S D T+ +W L N P GH ++V
Sbjct: 9 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS 215
+ S+DG+ +SGS G L+ WD TG + GH K + ++ ++ R+ VS
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTT-RRFVGHTKDVLSVA-----FSSDNRQIVS 122
Query: 216 ASKDGDARIWD-VSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWETTQG 271
S+D ++W+ + + K + H+ V+CV++ + +I + D +KVW
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC 182
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
KL GH ++N++ +S + +L
Sbjct: 183 KLKTNHIGHTGYLNTVTVSPDGSL------------------------------------ 206
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391
SG D LW+ K T G ++N + FSP+ W+ +A+ SIK+W+
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAAT-GPSIKIWD-LE 262
Query: 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451
GK + V +++ E+I + + C SL +WSAD + L +G D+
Sbjct: 263 GKII---------VDELKQEVI-------STSSKAEPPQCTSL-AWSADGQTLFAGYTDN 305
Query: 452 TLKVWDI 458
++VW +
Sbjct: 306 LVRVWQV 312
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 106/255 (41%), Gaps = 61/255 (23%)
Query: 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327
T Q L LKGH WV +A + ++
Sbjct: 2 TEQMTLRGTLKGHNGWVTQIATTPQF---------------------------------- 27
Query: 328 APERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383
P+ ++S S D T+ +W+ + P+ + GH V+ V S DGQ+ S S+D +
Sbjct: 28 -PDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQIRF-----ELIYCFRYPS---------NFYCVVD-- 427
++LW+ TTG F GH V + F +++ R + Y V D
Sbjct: 87 LRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES 146
Query: 428 ----MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
+SC +S ++ + +++S D +KVW++ KLK + GH + V SPDG
Sbjct: 147 HSEWVSCVR--FSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 484 EKVASGGKDRVLKLW 498
ASGGKD LW
Sbjct: 205 SLCASGGKDGQAMLW 219
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 137/334 (41%), Gaps = 58/334 (17%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-----CLSGHTLAV 243
L GH W+T I+ P + +SAS+D +W ++ + L GH+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDM----ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE-YALRTGAFD 301
+ V DG +GS D T+++W+ T G R GH V S+A S++ + +G+ D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 302 HTGK--------QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
T K +Y+ +E + ++ +VS D + +W A K K
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-K 185
Query: 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
T GH +N V SPDG AS D LW+ GK + G ++I
Sbjct: 186 TNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---------DII 236
Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD----IRTQKLKQDLPG 469
+ N Y W L + ++K+WD I +LKQ++
Sbjct: 237 NALCFSPNRY-------------W-------LCAATGPSIKIWDLEGKIIVDELKQEVIS 276
Query: 470 HAD-----EVFAVDWSPDGEKVASGGKDRVLKLW 498
+ + ++ WS DG+ + +G D ++++W
Sbjct: 277 TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 40/126 (31%), Gaps = 49/126 (38%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----------CTGHKNWVLC 155
GHT + +V SPDG ASG D LWDLN ++ C + LC
Sbjct: 190 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 249
Query: 156 ---------------------------------------IAWSADGKHLVSGSKAGELQC 176
+AWSADG+ L +G ++
Sbjct: 250 AATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRV 309
Query: 177 WDPQTG 182
W G
Sbjct: 310 WQVTIG 315
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 132/335 (39%), Gaps = 72/335 (21%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTT-----------VRLWD----------LNTQTPMFK 145
HT V V FS DG LA+G TT RL D LNT +
Sbjct: 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSS---- 118
Query: 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
++ + +S DGK L +G++ ++ WD + K L GH++ I + + P
Sbjct: 119 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV-MILQGHEQDIYSLDYFP-- 175
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264
+ VS S D RIWD+ +C + LS T GDG I GS D ++
Sbjct: 176 ---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVR 232
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324
VW++ G L+ L +E TG D Y+ +
Sbjct: 233 VWDSETGFLVERL------------DSENESGTGHKDSV-----------------YSVV 263
Query: 325 KGNAPERLVSGSDDFTMFLWE------PAVSKQPKT-----RMTGHQQLVNHVYFSPDGQ 373
+ +VSGS D ++ LW + SK P + GH+ V V + + +
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE 323
Query: 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
++ S S D+ + W+ +G + + +GH V +
Sbjct: 324 YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 148/394 (37%), Gaps = 103/394 (26%)
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKA---------GELQCW---------DPQTGKP 184
+ K H + V C+ +S DG++L +G G L DP+
Sbjct: 57 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 116
Query: 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244
S +P S +I + + P + + ++D RIWD+ RK V+ L GH +
Sbjct: 117 SSSPSS--DLYIRSVCFSP-----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY 169
Query: 245 CVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302
+ + GD ++ +GS D T+++W+ G+ SL LS E + T A
Sbjct: 170 SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQC------------SLTLSIEDGVTTVAVSP 216
Query: 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362
+Y I + +R V D T FL E S+ TGH+
Sbjct: 217 GDGKY----------------IAAGSLDRAVRVWDSETGFLVERLDSENESG--TGHKDS 258
Query: 363 VNHVYFSPDGQWVASASFDKSIKLWN------------GTTGKFVAVFRGHVGPVYQIRF 410
V V F+ DGQ V S S D+S+KLWN +G + GH V +
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV-- 316
Query: 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 470
+ + + +LSGSKD + WD ++ L GH
Sbjct: 317 -------------------------ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351
Query: 471 ADEVFAV------DWSPDGEKVASGGKDRVLKLW 498
+ V +V P+ A+G D ++W
Sbjct: 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 89/211 (42%), Gaps = 24/211 (11%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + + S+ + P G +L SGSGD TVR+WDL T + DGK
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 220
Query: 164 HLVSGSKAGELQCWDPQTG------KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS 217
++ +GS ++ WD +TG +GHK + + + + VS S
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-----TRDGQSVVSGS 275
Query: 218 KDGDARIWDVSLRK------------CVICLSGH-TLAVTCVKWGGDGVIYTGSQDCTIK 264
D ++W++ C + GH ++ D I +GS+D +
Sbjct: 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVL 335
Query: 265 VWETTQGKLIRELKGHGHWVNSLALSTEYAL 295
W+ G + L+GH + V S+A++ +L
Sbjct: 336 FWDKKSGNPLLMLQGHRNSVISVAVANGSSL 366
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 88/177 (49%), Gaps = 18/177 (10%)
Query: 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRM---TGHQQLVNHVYFSPDGQWVASASFDKS 383
+ P+ L ++D+ L+ PA+ ++ + H +V V FS DG+++A+ +K+
Sbjct: 29 SVPDALKKQTNDY-YILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 86
Query: 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS--WSADS 441
+++ + G VA + P N S + + S +S D
Sbjct: 87 TQVYRVSDGSLVARLSDDSA-----------ANKDPENLNTSSSPSSDLYIRSVCFSPDG 135
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ L +G++D +++WDI +K+ L GH +++++D+ P G+K+ SG DR +++W
Sbjct: 136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIW 192
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 85 VYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------- 137
V+ + F + ++ + + GH ++V SV F+ DG+ + SGS D +V+LW+L
Sbjct: 233 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS 292
Query: 138 -----NTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP---L 189
N+ T GHK++VL +A + + ++++SGSK + WD K SGNP L
Sbjct: 293 DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD----KKSGNPLLML 348
Query: 190 SGHKKWITGIS-WEPVHLNAPCRRFVSASKDGDARIW 225
GH+ + ++ L F + S D ARIW
Sbjct: 349 QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/320 (23%), Positives = 128/320 (40%), Gaps = 77/320 (24%)
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL----- 277
R DV L K + HT V CVK+ DG + T +V+ + G L+ L
Sbjct: 51 REIDVELHKSL----DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSA 106
Query: 278 --KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE-----------------MKKAAL 318
K + S + S++ +R+ F GK ++ E ++
Sbjct: 107 ANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQ 166
Query: 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVAS 377
+ Y+ + ++LVSGS D T+ +W+ + T + V V SP DG+++A+
Sbjct: 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDGVTTVAVSPGDGKYIAA 224
Query: 378 ASFDKSIKLWNGTTGKFVAVF-------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430
S D+++++W+ TG V GH VY + F
Sbjct: 225 GSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-------------------- 264
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD------------LPGHADEVFAVD 478
+ D + ++SGS D ++K+W+++ K D GH D V +V
Sbjct: 265 -------TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 479 WSPDGEKVASGGKDRVLKLW 498
+ + E + SG KDR + W
Sbjct: 318 TTQNDEYILSGSKDRGVLFW 337
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 86/195 (44%), Gaps = 32/195 (16%)
Query: 99 RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHK 150
+CS T++ + V +VA SP DG+ +A+GS D VR+WD T + TGHK
Sbjct: 198 QCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 256
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK---PSGNPLS--------GHKKWITGI 199
+ V + ++ DG+ +VSGS ++ W+ Q S P S GHK ++ +
Sbjct: 257 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 316
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-------G 252
+ +S SKD WD ++ L GH +V V
Sbjct: 317 A-----TTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 371
Query: 253 VIYTGSQDCTIKVWE 267
V TGS DC ++W+
Sbjct: 372 VFATGSGDCKARIWK 386
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L+ L+GH V L LS ++ + A
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 154/354 (43%), Gaps = 62/354 (17%)
Query: 174 LQCWDPQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYV-------ITGADDKMIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHT---------------GKQ------YSSPEE------MKKAALERY 321
Y + TG+ D+T G++ + +PEE + + +
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV 273
Query: 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
+ G+ +VSGS D T+ +W+ A K ++GH + + + + SAS D
Sbjct: 274 RTVSGHG-NIVVSGSYDNTLIVWDVAQMKCLYI-LSGHTDRIYSTIYDHERKRCISASMD 331
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR--------------YPSNF-YCVV 426
+I++W+ G+ + +GH V +R + Y F Y
Sbjct: 332 TTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHT 391
Query: 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDW 479
++S + Y +L+SGS++ ++++R+ KL ++ AD++++V++
Sbjct: 392 NLSAITTFY---VSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNF 441
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASMDTTIRIWDLENGELM-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL M+ GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 444 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+++G+ D ++V+D +K L GH V+A+ ++ G + SG DR +++W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 128/343 (37%), Gaps = 70/343 (20%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL------------IYCFRYPSNFYCVVDM 428
D I LWN K + V+ + F I F Y V D+
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQ-YLVDDL 274
Query: 429 SCCMSLYS-----------WSADSRLLLSGSKDSTLKVWDIRT 460
+ YS WSAD + L +G D+ ++VW + T
Sbjct: 275 RPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
GH+ V + DG S S D T+RLWD+ T + GHK+ V+ + +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-LNAPCRRFVSASKDGDARI 224
+SGS+ ++ W + G+ L GH W++ + P + +SA D +
Sbjct: 123 ISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW 283
W+++ + GH + + DG +I + +D I +W K + L
Sbjct: 181 WNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE- 239
Query: 284 VNSLALS 290
V SLA S
Sbjct: 240 VFSLAFS 246
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG++ A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
E E + P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
S + +++SGS+D TLK+W+ T K+++ L + + + P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
K +ASG + L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
F W+ S D I+++N TG+ V F H + I +P+ Y
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
+LSGS D T+K+W+ L+Q GH V V ++P D
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
ASG DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 90 RLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 210 LIASAGKDGEIXLW 223
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/366 (24%), Positives = 135/366 (36%), Gaps = 82/366 (22%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + + P E
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVV-------------------PNEKAD----- 163
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
+ ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 164 ------DDSVTIISAGNDKXVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
D I LWN K + ++ + N Y W
Sbjct: 217 DGEIXLWNLAAKKAXYTLSAQ---------DEVFSLAFSPNRY-------------W--- 251
Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVD--WSPDGEKVASGGKD 492
L+ + + +KV+ + Q L DL A E AV WS DG+ + +G D
Sbjct: 252 ----LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 493 RVLKLW 498
V+++W
Sbjct: 308 NVIRVW 313
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 138/371 (37%), Gaps = 78/371 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVX-----SVDIDKKASXIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIXLWNLAAKKAXYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKVWDIRT 460
D+ ++VW + T
Sbjct: 307 DNVIRVWQVXT 317
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 109/274 (39%), Gaps = 63/274 (22%)
Query: 235 CLSGHTLAVTCV--KWGGDGVIYTGSQDCTIKVWETTQ-----GKLIRELKGHGHWVNSL 287
L GH VT + G ++ + S+D T+ W+ T G +R KGH H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 288 ALSTE--YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVS 334
L+ + YAL + ++D T + + A E Y + G+ + ++S
Sbjct: 72 TLTADGAYAL-SASWDKTLRLWDV------ATGETYQRFVGHKSDVXSVDIDKKASXIIS 124
Query: 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQWVASASFDKSIKLWN 388
GS D T+ +W + Q + GH V+ V P D + SA DK +K WN
Sbjct: 125 GSRDKTIKVW--TIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN 182
Query: 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448
+ A F GH + ++ + S D L+ S
Sbjct: 183 LNQFQIEADFIGH---------------------------NSNINTLTASPDGTLIASAG 215
Query: 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482
KD + +W++ +K L DEVF++ +SP+
Sbjct: 216 KDGEIXLWNLAAKKAXYTLSAQ-DEVFSLAFSPN 248
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 23/184 (12%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR 212
+ + S DG + S K GE+ W+ K + LS + + +++ +P R
Sbjct: 199 INTLTASPDGTLIASAGKDGEIXLWN-LAAKKAXYTLSAQDE-VFSLAF------SPNRY 250
Query: 213 FVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDCTI 263
+++A+ +++ + + V L +G++ A + W DG ++ G D I
Sbjct: 251 WLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI 310
Query: 264 KVWE 267
+VW+
Sbjct: 311 RVWQ 314
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVXT 317
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 137/366 (37%), Gaps = 82/366 (22%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
D I LWN K + + ++ + N Y W
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ---------DEVFSLAFSPNRY-------------W--- 251
Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVD--WSPDGEKVASGGKD 492
L+ + + +KV+ + Q L DL A E AV WS DG+ + +G D
Sbjct: 252 ----LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 493 RVLKLW 498
V+++W
Sbjct: 308 NVIRVW 313
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 138/371 (37%), Gaps = 78/371 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKVWDIRT 460
D+ ++VW + T
Sbjct: 307 DNVIRVWQVMT 317
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 97/221 (43%), Gaps = 33/221 (14%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC--IAWSAD 161
++GH V ++ ++ G L SGS D TVR+WD+ GH + V C I +
Sbjct: 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 162 GKHLVSGSKAGELQCWD-------PQTGK----------PSGNP-----LSGHKKWITGI 199
K++V+GS+ L W P G+ P NP L GH + +
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
S H N VS S D +WDV+ KC+ LSGHT + + + + S
Sbjct: 277 SG---HGNI----VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299
D TI++W+ G+L L+GH V L LS ++ + A
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAA 370
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 60/353 (16%)
Query: 174 LQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232
L+ W P L GH IT + +E ++ ++ + D R++D +K
Sbjct: 102 LKNWYNPKFVPQRTTLRGHXTSVITCLQFEDNYV-------ITGADDKXIRVYDSINKKF 154
Query: 233 VICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
++ LSGH V +K+ G++ +GS D T++VW+ +G +GH V L + E
Sbjct: 155 LLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI-VE 213
Query: 293 YA----LRTGAFDHTGKQYSSPEE--MKKAALERYNKIKGNAPER--------------- 331
Y + TG+ D+T + P+E + E + + PE
Sbjct: 214 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV 273
Query: 332 ---------LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382
+VSGS D T+ +W+ A K ++GH + + + + SAS D
Sbjct: 274 RTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI-LSGHTDRIYSTIYDHERKRCISASXDT 332
Query: 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR--------------YPSNF-YCVVD 427
+I++W+ G+ +GH V +R + Y F Y +
Sbjct: 333 TIRIWDLENGELXYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTN 392
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDW 479
+S + Y +L+SGS++ ++++R+ KL ++ AD++++V++
Sbjct: 393 LSAITTFY---VSDNILVSGSENQ-FNIYNLRSGKLVHANILKDADQIWSVNF 441
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD 161
+ GH +V +V S G + SGS D T+ +WD+ ++ +GH + + + +
Sbjct: 264 GVLRGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHE 321
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221
K +S S ++ WD + G+ L GH + G+ L + VSA+ DG
Sbjct: 322 RKRCISASXDTTIRIWDLENGELX-YTLQGHTA-LVGL------LRLSDKFLVSAAADGS 373
Query: 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274
R WD + L+ + D ++ +GS++ ++ GKL+
Sbjct: 374 IRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYNLRSGKLV 425
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
+C ++GHT+ + S + + ++ S S DTT+R+WDL + GH V +
Sbjct: 301 KCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRL 360
Query: 159 SADGKHLVSGSKAGELQCWDPQ 180
S K LVS + G ++ WD
Sbjct: 361 S--DKFLVSAAADGSIRGWDAN 380
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 444 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+++G+ D ++V+D +K L GH V+A+ ++ G + SG DR +++W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW 188
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 137/366 (37%), Gaps = 82/366 (22%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
D I LWN K + + ++ + N Y W
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ---------DEVFSLAFSPNRY-------------W--- 251
Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVD--WSPDGEKVASGGKD 492
L+ + + +KV+ + Q L DL A E AV WS DG+ + +G D
Sbjct: 252 ----LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 493 RVLKLW 498
V+++W
Sbjct: 308 NVIRVW 313
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 138/371 (37%), Gaps = 78/371 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKVWDIRT 460
D+ ++VW + T
Sbjct: 307 DNVIRVWQVMT 317
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 297
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 298 GQTLFAGYTDNVIRVWQVMT 317
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
E E + P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V + +P+
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVS-------FAVFHPT--- 239
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
+++SGS+D TLK+W+ T K+++ L + + + P G
Sbjct: 240 -----------------LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
K +ASG + L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 86/240 (35%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNP----KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
F W+ S D I+++N TG+ V F H + I +P+ Y
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
+LSGS D T+K+W+ L+Q GH V V ++P D
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
ASG DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 30 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 149
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 209
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 137/366 (37%), Gaps = 82/366 (22%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 68
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 129 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 158
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 159 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 216
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
D I LWN K + + ++ + N Y W
Sbjct: 217 DGEIMLWNLAAKKAMYTLSAQ---------DEVFSLAFSPNRY-------------W--- 251
Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVD--WSPDGEKVASGGKD 492
L+ + + +KV+ + Q L DL A E AV WS DG+ + +G D
Sbjct: 252 ----LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307
Query: 493 RVLKLW 498
V+++W
Sbjct: 308 NVIRVW 313
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 136/367 (37%), Gaps = 78/367 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 125
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 126 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 184
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 185 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 210
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 211 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 255
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 256 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 306
Query: 450 DSTLKVW 456
D+ ++VW
Sbjct: 307 DNVIRVW 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 198
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 199 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 248
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 249 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 308
Query: 262 TIKVWE 267
I+VW+
Sbjct: 309 VIRVWQ 314
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 75.1 bits (183), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 24/194 (12%)
Query: 329 PERLVSGSDDFTMFLWEPAVSKQ----PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384
P L+S S D T+ W+ Q P GH +V + DG + SAS+DK++
Sbjct: 24 PNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 83
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFE-----LIYCFRYPSNFYCVVDMSCCMSLY---S 436
+LW+ TG+ F GH V + + +I R + + C +L
Sbjct: 84 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHND 143
Query: 437 WSA------------DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484
W + DS ++S D +K W++ +++ D GH + + SPDG
Sbjct: 144 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT 203
Query: 485 KVASGGKDRVLKLW 498
+AS GKD + LW
Sbjct: 204 LIASAGKDGEIMLW 217
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 137/366 (37%), Gaps = 82/366 (22%)
Query: 148 GHKNWVLCIAWSADGKHLV-SGSKAGELQCW-----DPQTGKPSGNPLSGHKKWITGISW 201
GH WV +A SA +L+ S S+ L W D + G P GH +
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV-RSFKGHSHIV----- 62
Query: 202 EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260
+ L A +SAS D R+WDV+ + GH V V +I +GS+D
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320
TIKVW T +G+ + L GH WV+ + +
Sbjct: 123 KTIKVW-TIKGQCLATLLGHNDWVSQVRVVP----------------------------- 152
Query: 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380
N+ + ++S +D + W Q + GH +N + SPDG +ASA
Sbjct: 153 -NEKADDDSVTIISAGNDKMVKAWNLN-QFQIEADFIGHNSNINTLTASPDGTLIASAGK 210
Query: 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440
D I LWN K + + ++ + N Y W
Sbjct: 211 DGEIMLWNLAAKKAMYTLSAQ---------DEVFSLAFSPNRY-------------W--- 245
Query: 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADEVFAVD--WSPDGEKVASGGKD 492
L+ + + +KV+ + Q L DL A E AV WS DG+ + +G D
Sbjct: 246 ----LAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 301
Query: 493 RVLKLW 498
V+++W
Sbjct: 302 NVIRVW 307
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 138/371 (37%), Gaps = 78/371 (21%)
Query: 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCI 156
T+ GH V S+A S L S S D T+ W L P+ GH + V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216
+ADG + +S S L+ WD TG+ + GHK + V ++ +S
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGE-TYQRFVGHKSDVM-----SVDIDKKASMIISG 119
Query: 217 SKDGDARIWDVSLRKCVICLSGHTLAVTCV------KWGGDGV-IYTGSQDCTIKVWETT 269
S+D ++W + +C+ L GH V+ V K D V I + D +K W
Sbjct: 120 SRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN 178
Query: 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
Q ++ + GH +N+L S + L
Sbjct: 179 QFQIEADFIGHNSNINTLTASPDGTL---------------------------------- 204
Query: 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
+ S D + LW A K T Q V + FSP+ W+A+A
Sbjct: 205 --IASAGKDGEIMLWNLAAKKAMYT--LSAQDEVFSLAFSPNRYWLAAA----------- 249
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
T + VF + P Y L+ R Y +SL +WSAD + L +G
Sbjct: 250 -TATGIKVFS--LDPQY-----LVDDLRPEFAGYSKAAEPHAVSL-AWSADGQTLFAGYT 300
Query: 450 DSTLKVWDIRT 460
D+ ++VW + T
Sbjct: 301 DNVIRVWQVMT 311
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 27/186 (14%)
Query: 99 RCSATIAGHTEAVLSVAFSP------DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW 152
+C AT+ GH + V V P D + S D V+ W+LN GH +
Sbjct: 133 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN 192
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA--PC 210
+ + S DG + S K GE+ W+ L+ K T + + V A P
Sbjct: 193 INTLTASPDGTLIASAGKDGEIMLWN----------LAAKKAMYTLSAQDEVFSLAFSPN 242
Query: 211 RRFVSASKDGDARIWDVSLRKCVICL----SGHTLA----VTCVKWGGDG-VIYTGSQDC 261
R +++A+ +++ + + V L +G++ A + W DG ++ G D
Sbjct: 243 RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDN 302
Query: 262 TIKVWE 267
I+VW+
Sbjct: 303 VIRVWQ 308
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 19/80 (23%)
Query: 79 EKVLSIVYQPQ------------AVFRIRP---VNRCSATIAGHTEAV----LSVAFSPD 119
++V S+ + P VF + P V+ AG+++A +S+A+S D
Sbjct: 232 DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSAD 291
Query: 120 GRQLASGSGDTTVRLWDLNT 139
G+ L +G D +R+W + T
Sbjct: 292 GQTLFAGYTDNVIRVWQVMT 311
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
E E + P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
S + +++SGS+D TLK+W+ T K+++ L + + + P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
K +ASG + L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P + F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPST----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
F W+ S D I+++N TG+ V F H + I +P+ Y
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
+LSGS D T+K+W+ L+Q GH V V ++P D
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
ASG DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 12/195 (6%)
Query: 92 FRIRPVNRCSAT----IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC- 146
FRIR N + H + + S+A P + SGS D TV+LW+ + +
Sbjct: 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Query: 147 TGHKNWVLCIAWS-ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205
GH+++V+C+A++ D SG ++ W P+ +G ++ + + + P+
Sbjct: 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL- 195
Query: 206 LNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTI 263
P + + ++AS D +IWD + CV L GH V+ + +I +GS+D T+
Sbjct: 196 ---PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252
Query: 264 KVWETTQGKLIRELK 278
K+W ++ K+ + L
Sbjct: 253 KIWNSSTYKVEKTLN 267
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 110/259 (42%), Gaps = 39/259 (15%)
Query: 254 IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-TEYALRTGAFDHTGKQYSSPE- 311
I GS D I+V+ G+ + + + H ++ S+A+ T+ + +G+ D T K ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129
Query: 312 ---EMKKAALERYN---KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365
E E + P SG D T+ +W S T TG ++ VN+
Sbjct: 130 WALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189
Query: 366 V--YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423
V Y PD ++ +AS D +IK+W+ T VA GH+ V
Sbjct: 190 VDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV------------------ 231
Query: 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483
S + +++SGS+D TLK+W+ T K+++ L + + + P G
Sbjct: 232 ---------SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTG 282
Query: 484 EK--VASGGKDRVLKLWMG 500
K +ASG + L +G
Sbjct: 283 RKNYIASGFDNGFTVLSLG 301
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 44/240 (18%)
Query: 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185
GS D +R+++ NT + H +++ IA +++SGS ++ W+ +
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVT 244
GH+ ++ +++ P + F S D ++W + L+ G V
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPST----FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVN 188
Query: 245 CVKW---GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
V + + T S D TIK+W+ + L+GH V+ +
Sbjct: 189 YVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI------ 242
Query: 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361
++SGS+D T+ +W + K KT G ++
Sbjct: 243 ------------------------------IISGSEDGTLKIWNSSTYKVEKTLNVGLER 272
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 54/133 (40%), Gaps = 29/133 (21%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427
F W+ S D I+++N TG+ V F H + I +P+ Y
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAV-------HPTKPY---- 111
Query: 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSP-DGEK 485
+LSGS D T+K+W+ L+Q GH V V ++P D
Sbjct: 112 ----------------VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 486 VASGGKDRVLKLW 498
ASG DR +K+W
Sbjct: 156 FASGCLDRTVKVW 168
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 83/158 (52%), Gaps = 7/158 (4%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK 170
+LS+A+SPDG+ LASG+ D + ++D+ T + GH + + +S D + LV+ S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230
G ++ +D Q +G LSGH W+ +++ P FVS+S D ++WDV R
Sbjct: 227 DGYIKIYDVQHANLAGT-LSGHASWVLNVAFCP-----DDTHFVSSSSDKSVKVWDVGTR 280
Query: 231 KCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWE 267
CV H V VK+ G+G I + D I +++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 7/188 (3%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
++ GH V+SV S AS S D +RLWDL + +A+S D
Sbjct: 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS 134
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222
++L +G+ G++ + ++GK L K+I I++ P + S + DG
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKE-YSLDTRGKFILSIAYSP-----DGKYLASGAIDGII 188
Query: 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHG 281
I+D++ K + L GH + + + + D ++ T S D IK+++ L L GH
Sbjct: 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA 248
Query: 282 HWVNSLAL 289
WV ++A
Sbjct: 249 SWVLNVAF 256
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 105/261 (40%), Gaps = 47/261 (18%)
Query: 238 GHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTE 292
H A+ V WG + + TGS D +KVW+ +L + GH + +++
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 293 YALRTGAFD-----------HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
+ L A GKQ S + ++ + + L +G+ +
Sbjct: 90 HTLPIAASSSLDAHIRLWDLENGKQIKS---IDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401
++ K+ + T + + + +SPDG+++AS + D I +++ TGK + GH
Sbjct: 147 NIFGVESGKKEYSLDT-RGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGH 205
Query: 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461
P+ + F S DS+LL++ S D +K++D++
Sbjct: 206 AMPIRSLTF---------------------------SPDSQLLVTASDDGYIKIYDVQHA 238
Query: 462 KLKQDLPGHADEVFAVDWSPD 482
L L GHA V V + PD
Sbjct: 239 NLAGTLSGHASWVLNVAFCPD 259
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 20/159 (12%)
Query: 81 VLSIVYQPQA-------------VFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGS 127
+LSI Y P +F I + T+ GH + S+ FSPD + L + S
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS 225
Query: 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187
D ++++D+ +GH +WVL +A+ D H VS S ++ WD T + +
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGT-RTCVH 284
Query: 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226
H+ + G+ + N + VS D + I+D
Sbjct: 285 TFFDHQDQVWGVKY-----NGNGSKIVSVGDDQEIHIYD 318
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 122/297 (41%), Gaps = 43/297 (14%)
Query: 214 VSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQ 270
V+ S D ++W + + L GH L V V + + S D I++W+
Sbjct: 52 VTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLEN 111
Query: 271 GKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQ--YSSPEEMKKAALERYNKIK- 325
GK I+ + W + + ++Y L TG H GK + K+ +L+ K
Sbjct: 112 GKQIKSIDAGPVDAWTLAFSPDSQY-LATGT--HVGKVNIFGVESGKKEYSLDTRGKFIL 168
Query: 326 --GNAPE--RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381
+P+ L SG+ D + +++ A K T + GH + + FSPD Q + +AS D
Sbjct: 169 SIAYSPDGKYLASGAIDGIINIFDIATGKLLHT-LEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441
IK+++ GH V + F C D
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAF--------------------C-------PDD 260
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+S S D ++KVWD+ T+ H D+V+ V ++ +G K+ S G D+ + ++
Sbjct: 261 THFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 144/370 (38%), Gaps = 81/370 (21%)
Query: 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH-- 205
GH V + W+ + +VS S+ G L W+ T + + + + H W+ ++ P
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-HAIKLHCPWVMECAFAPNGQS 122
Query: 206 -----LNAPCRRF---VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255
L++ C F A +DG+ + V L+GH + ++ D +
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRV--------LTGHKGYASSCQYVPDQETRLI 174
Query: 256 TGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312
TGS D T +W+ T G+ I GH + L+LS
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS---------------------- 212
Query: 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372
N + N +SGS D T+ LW+ ++ + GH+ +N V F PDG
Sbjct: 213 --------INSLNANM---FISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432
Q + S D + +L++ TG + V+ R P + + +
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYN-----------------REPDRNDNELPI---V 301
Query: 433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPDGEKVAS 488
+ ++S RLL +G + VWD ++ +L H + + S DG + +
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361
Query: 489 GGKDRVLKLW 498
G D+ LK+W
Sbjct: 362 GSWDKNLKIW 371
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 131/321 (40%), Gaps = 40/321 (12%)
Query: 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159
C T+ GH+ V S+ ++P+ + S S D + +W+ T H WV+ A++
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 160 ADGKHLVSGSKAGELQCW------DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213
+G+ + G + D P L+GHK + + + P R
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET----RL 173
Query: 214 VSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKWG--GDGVIYTGSQDCTIKVW 266
++ S D +WDV+ + + SGHT V + + +GS D T+++W
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
Query: 267 E-TTQGKLIRELKGHGHWVNSLALSTE---------------YALRTGAFDHTGKQYSSP 310
+ + +R GH +NS+ + + +RTG H + Y+
Sbjct: 234 DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNRE 290
Query: 311 EEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHV 366
+ L + + RL+ +G + ++W+ +++ T H+ ++ +
Sbjct: 291 PDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350
Query: 367 YFSPDGQWVASASFDKSIKLW 387
S DG + + S+DK++K+W
Sbjct: 351 GLSSDGSALCTGSWDKNLKIW 371
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--QTPMFKCTGHKN 151
+R +R T GH + SV F PDG++ +GS D T RL+D+ T Q ++ +N
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN 294
Query: 152 -----WVLCIAWSADGKHLVSGSKAGELQCWD 178
V +A+S G+ L +G G+ WD
Sbjct: 295 DNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 426 VDMSCCMSL-------YS--WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA 476
D+ CC +L YS W+ + ++S S+D L VW+ T + + H V
Sbjct: 54 TDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME 113
Query: 477 VDWSPDGEKVASGGKDRVLKLW 498
++P+G+ VA GG D ++
Sbjct: 114 CAFAPNGQSVACGGLDSACSIF 135
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 45/180 (25%)
Query: 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF----E 411
+ GH V + ++P+ W+ SAS D + +WN T + + H V + F +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSAD-------SRL--------------------L 444
+ C +D +C + S AD SR+ L
Sbjct: 122 SVACGG--------LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 445 LSGSKDSTLKVWDIRTQK----LKQDLP-GHADEVFAVDW-SPDGEKVASGGKDRVLKLW 498
++GS D T +WD+ T + + P GH +V ++ S + SG D ++LW
Sbjct: 174 ITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 205
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 206 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 260
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 321 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 343
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 344 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 208
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
T HQ V V + P + + D+ I++WN +G ++ H
Sbjct: 269 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 320
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
C L WS + L+SG + L +W T +L
Sbjct: 321 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 360
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
GH V ++ SPDG VAS D L+LW
Sbjct: 361 KGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 216 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 275
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 276 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 332
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 333 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 388
Query: 264 KVWE 267
++W
Sbjct: 389 RLWR 392
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 115/290 (39%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W + L SG
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSG 216
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 217 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 271
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 272 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 331
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 332 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 354
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + GH V + SPDG VASA+ D++++LW
Sbjct: 355 NQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 219
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 220 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 279
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
T HQ V V + P + + D+ I++WN +G ++ H
Sbjct: 280 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 331
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
C L WS + L+SG + L +W T +L
Sbjct: 332 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 371
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
GH V ++ SPDG VAS D L+LW
Sbjct: 372 KGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----TPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 227 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 286
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 287 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 343
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 344 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 399
Query: 264 KVWE 267
++W
Sbjct: 400 RLWR 403
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGS 169
V SV +S DG L+ G G+ V ++D+ +QT + GH+ V C++W+ +H L SGS
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN---RHVLSSGS 193
Query: 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229
++G + D + L GH + G++W L + S D +IWD
Sbjct: 194 RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-----QLASGGNDNVVQIWDARS 248
Query: 230 RKCVICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVN 285
+ H AV V W ++ T G+ D I W G + + G V
Sbjct: 249 SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQVT 307
Query: 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345
SL S S E M G D + +W
Sbjct: 308 SLIWSPH----------------SKEIMS------------------THGFPDNNLSIWS 333
Query: 346 PAVSKQPK-TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395
+ S K + H V + SPDG+ +++A+ D+++K W G V
Sbjct: 334 YSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV 384
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 15/191 (7%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV 153
+R N T+ GH+ V +A+ DG QLASG D V++WD + P F T H V
Sbjct: 203 VRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAV 262
Query: 154 LCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
+AW +L++ G+ ++ W+ TG +G + +T + W P
Sbjct: 263 KAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ--VTSLIWSP-----HS 315
Query: 211 RRFVSAS--KDGDARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265
+ +S D + IW S + + H V DG ++ T + D +K
Sbjct: 316 KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKF 375
Query: 266 WETTQGKLIRE 276
W G ++
Sbjct: 376 WRVYDGDHVKR 386
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 104/278 (37%), Gaps = 60/278 (21%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY---ALRTG 298
V VKW DG + G + + +++ +R + GH V L+ + R+G
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSG 196
Query: 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-----------RLVSGSDDFTMFLWEPA 347
A H + A + ++G++ E +L SG +D + +W+ A
Sbjct: 197 AIHH---------HDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWD-A 246
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGP 404
S PK T H V V + P +A+ + DK I WN TG V
Sbjct: 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV--------- 297
Query: 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS--GSKDSTLKVWDIRTQK 462
VD ++ WS S+ ++S G D+ L +W +
Sbjct: 298 -------------------NTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 463 LKQ--DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L + D+P H V SPDG +++ D LK W
Sbjct: 339 LTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFW 376
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 19/141 (13%)
Query: 375 VASASFDKSIKLWNGTTGKFVAVFR------------GHVGPVYQIRFEL----IYCFRY 418
V + + ++++ +WN +G A+ H G + IY
Sbjct: 106 VVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165
Query: 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAV 477
+ + + SW + +L SGS+ + D+R + L GH+ EV +
Sbjct: 166 QTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223
Query: 478 DWSPDGEKVASGGKDRVLKLW 498
W DG ++ASGG D V+++W
Sbjct: 224 AWRSDGLQLASGGNDNVVQIW 244
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 117/290 (40%), Gaps = 57/290 (19%)
Query: 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168
E + SVA+ +G LA G+ V+LWD+ Q + T H V ++W++ L SG
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSG 125
Query: 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
S++G + D + + LSGH + + G+ W P R S D +W +
Sbjct: 126 SRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSA 180
Query: 229 LRKC----VICLSGHTLAVTCVKWG--GDGVIYT--GSQDCTIKVWETTQGKLIRELKGH 280
+ + + H AV V W V+ T G+ D I++W G + + H
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--D 338
V S+ S Y + L+SG
Sbjct: 241 SQ-VCSILWSPHY------------------------------------KELISGHGFAQ 263
Query: 339 FTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387
+ +W+ P ++K + + GH V + SPDG VASA+ D++++LW
Sbjct: 264 NQLVIWKYPTMAKVAE--LKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 65/271 (23%), Positives = 106/271 (39%), Gaps = 44/271 (16%)
Query: 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301
++ V W +G + G+ +++W+ Q K +R + H V SL+ ++ Y L +G+
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS-YILSSGSRS 128
Query: 302 -HTGKQYSSPEEMKKAALERYNKIKGN---APE--RLVSGSDDFTMFLWEPAVSKQ---P 352
H E A L +++ AP+ L SG +D + +W A + P
Sbjct: 129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 188
Query: 353 KTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409
T HQ V V + P + + D+ I++WN +G ++ H
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------- 240
Query: 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDL 467
C L WS + L+SG + L +W T +L
Sbjct: 241 ------------------SQVCSIL--WSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL 280
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
GH V ++ SPDG VAS D L+LW
Sbjct: 281 KGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 17/184 (9%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGH 149
+R AT++GH++ V + ++PDGR LASG D V +W P+ T H
Sbjct: 136 VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH 195
Query: 150 KNWVLCIAWSADGKHLVS---GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206
+ V +AW ++++ G+ ++ W+ +G + + H + + I W P +
Sbjct: 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQ-VCSILWSPHY- 252
Query: 207 NAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTI 263
+ +S IW V L GHT V + DG + + + D T+
Sbjct: 253 ----KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETL 308
Query: 264 KVWE 267
++W
Sbjct: 309 RLWR 312
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 87 QPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLW 135
Q Q V P A + GHT VLS+ SPDG +AS + D T+RLW
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T + +
Sbjct: 166 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 225
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
F GH V + + L++ S F V D
Sbjct: 226 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 281
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
C+S +S +L +GS D T+ +WD+R KLK H DE+F V WSP E + AS
Sbjct: 282 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 489 GGKDRVLKLW 498
G DR L +W
Sbjct: 340 SGTDRRLHVW 349
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 262 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 321
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 322 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 381
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 382 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 409
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 232
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 233 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 288
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 289 SEFILATGSADKTVALWDLRNLKL 312
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 236
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 237 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 288
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 289 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 345 RLHVWDLSK 353
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T + +
Sbjct: 168 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 227
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
F GH V + + L++ S F V D
Sbjct: 228 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 283
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
C+S +S +L +GS D T+ +WD+R KLK H DE+F V WSP E + AS
Sbjct: 284 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 489 GGKDRVLKLW 498
G DR L +W
Sbjct: 342 SGTDRRLHVW 351
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 264 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 323
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 324 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 383
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 384 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 411
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 234
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 235 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 290
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 291 SEFILATGSADKTVALWDLRNLKL 314
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 238
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 239 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 290
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 291 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 347 RLHVWDLSK 355
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLW--NGTTGKFVAV---- 397
EP+ QP R+ GHQ+ + ++P+ ++ SAS D +I LW N T + +
Sbjct: 170 EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKN 229
Query: 398 -FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS--------------------------C 430
F GH V + + L++ S F V D
Sbjct: 230 IFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN 285
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-AS 488
C+S +S +L +GS D T+ +WD+R KLK H DE+F V WSP E + AS
Sbjct: 286 CLSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 489 GGKDRVLKLW 498
G DR L +W
Sbjct: 344 SGTDRRLHVW 353
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S T+ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 266 RNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 325
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 326 DEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI 385
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 386 SDFSWNP---NEPW-IICSVSEDNIMQVWQMA 413
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 16/144 (11%)
Query: 142 PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD----PQTGK--PSGNPLSGHKK 194
P + GH+ ++W+ + +L+S S + WD P+ + + N +GH
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTA 236
Query: 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDV---SLRKCVICLSGHTLAVTCVKWG-- 249
+ ++W +H + F S + D IWD + K + HT V C+ +
Sbjct: 237 VVEDVAWHLLHESL----FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPY 292
Query: 250 GDGVIYTGSQDCTIKVWETTQGKL 273
+ ++ TGS D T+ +W+ KL
Sbjct: 293 SEFILATGSADKTVALWDLRNLKL 316
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 34/189 (17%)
Query: 104 IAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLC 155
+ GH + ++++P+ L S S D T+ LWD+N + TGH V
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVED 240
Query: 156 IAWSADGKHLVSGSKAG------ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHL 206
+AW HL+ S G +L WD + T KPS + + H + +S+ P
Sbjct: 241 VAW-----HLLHESLFGSVADDQKLMIWDTRNNNTSKPS-HTVDAHTAEVNCLSFNPY-- 292
Query: 207 NAPCRRFVSA--SKDGDARIWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDC 261
F+ A S D +WD+ +L+ + H + V+W + ++ + D
Sbjct: 293 ----SEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 262 TIKVWETTQ 270
+ VW+ ++
Sbjct: 349 RLHVWDLSK 357
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 84/188 (44%), Gaps = 38/188 (20%)
Query: 345 EPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT----GKFV---A 396
+P+ P R+ GHQ+ + ++P+ + SAS D +I LW+ + GK V
Sbjct: 162 DPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKT 221
Query: 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM---------SLYSWSADSR----- 442
+F GH V + + L++ S F V D M S S S D+
Sbjct: 222 IFTGHTAVVEDVSWHLLH----ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVN 277
Query: 443 ----------LLLSGSKDSTLKVWDIRTQKLK-QDLPGHADEVFAVDWSPDGEKV-ASGG 490
+L +GS D T+ +WD+R KLK H DE+F V WSP E + AS G
Sbjct: 278 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 337
Query: 491 KDRVLKLW 498
DR L +W
Sbjct: 338 TDRRLNVW 345
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S ++ HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 258 RSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHK 317
Query: 151 NWVLCIAWSADGKHLVSGSKAG-ELQCWD---------PQTGKPSGNPL----SGHKKWI 196
+ + + WS + +++ S L WD P+ + L GH I
Sbjct: 318 DEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKI 377
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D ++W ++
Sbjct: 378 SDFSWNP---NEPW-VICSVSEDNIMQVWQMA 405
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 23/144 (15%)
Query: 179 PQTGKPSG--NP---LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228
P PSG NP L GH+K G+SW P +L+ +SAS D +WD+S
Sbjct: 158 PSKPDPSGECNPDLRLRGHQKEGYGLSWNP-NLSG---HLLSASDDHTICLWDISAVPKE 213
Query: 229 --LRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWET---TQGKLIRELKGHG 281
+ +GHT V V W + + + + D + +W+T K + H
Sbjct: 214 GKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHT 273
Query: 282 HWVNSLALS--TEYALRTGAFDHT 303
VN L+ + +E+ L TG+ D T
Sbjct: 274 AEVNCLSFNPYSEFILATGSADKT 297
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 100/445 (22%), Positives = 163/445 (36%), Gaps = 62/445 (13%)
Query: 83 SIVYQPQAVFRI-------------RPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGD 129
S+ ++P FRI P + +T HT+ V SV ++PDG AS GD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 130 TTVRLWD--LNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
T+ L++ T+T +F K H V + WS DG + S S ++ W+ T
Sbjct: 212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL 271
Query: 183 K-----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237
K P G + + GI W + VS S +G + L
Sbjct: 272 KVEKTIPVGTRIEDQQ---LGIIWTK-------QALVSISANGFINFVNPELGSIDQVRY 321
Query: 238 GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG-HGHWVNSLALSTEYAL 295
GH A+T + DG +++ + I W+ + G R H + + +++ L
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381
Query: 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355
T ++D K + ++ NK+ VS D + ++ +
Sbjct: 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441
Query: 356 MTGHQQLVNH--VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413
+T N V S D Q+VA D + ++ +G V+ + V P
Sbjct: 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK-LSGASVSEVKTIVHPAEITSV--- 497
Query: 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 473
F F D S + YS + + L + S W T K
Sbjct: 498 -AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNS-------WTFHTAK----------- 538
Query: 474 VFAVDWSPDGEKVASGGKDRVLKLW 498
V V WSPD ++A+G D + +W
Sbjct: 539 VACVSWSPDNVRLATGSLDNSVIVW 563
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 26/160 (16%)
Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW-VASASFDKSIKLWNGTTGKFVAVFR 399
+FL++ S +TG + +N V F P + + S S D ++ ++ G KF + F
Sbjct: 131 VFLFDTGTSNG---NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 187
Query: 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY-SWSADSRLLLSGSKDSTLKVWDI 458
H V+ +R+ P SL+ S D ++L D T K
Sbjct: 188 EHTKFVHSVRYN-------PDG-----------SLFASTGGDGTIVLYNGVDGT-KTGVF 228
Query: 459 RTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
LK H+ VF + WSPDG K+AS D+ +K+W
Sbjct: 229 EDDSLKN--VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 88/434 (20%), Positives = 143/434 (32%), Gaps = 144/434 (33%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKH 164
H+ SP G ASG VR+WD T + K T V I+W ++ K
Sbjct: 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 117
Query: 165 LVSGSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
+ + + G + +D TG +GN L+G + + + ++P + P R
Sbjct: 118 IAAVGEGRERFGHVFLFD--TGTSNGN-LTGQARAMNSVDFKP---SRPFR--------- 162
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280
I +GS D T+ ++E K H
Sbjct: 163 ---------------------------------IISGSDDNTVAIFEGPPFKFKSTFGEH 189
Query: 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340
+V+S+ + + +L F TG + YN + G
Sbjct: 190 TKFVHSVRYNPDGSL----FASTGGD---------GTIVLYNGVDGT------------- 223
Query: 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------- 393
+ V + + H V + +SPDG +ASAS DK+IK+WN T K
Sbjct: 224 ----KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279
Query: 394 -------------------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428
F+ +G + Q+R+
Sbjct: 280 GTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRY----------------GH 323
Query: 429 SCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HAD-----------EVFA 476
+ ++ S SAD + L S + + WDI T + P HA ++F
Sbjct: 324 NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 383
Query: 477 VDWSPDGEKVASGG 490
V W + V +GG
Sbjct: 384 VSWDDHLKVVPAGG 397
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-----AVFRGHVGPVYQI--- 408
T H SP G + AS ++++W+ T + VF G PV I
Sbjct: 56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG---PVKDISWD 112
Query: 409 --------------RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL-LLSGSKDSTL 453
RF ++ F ++ + + M+ + ++SGS D+T+
Sbjct: 113 SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTV 172
Query: 454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500
+++ K K H V +V ++PDG AS G D + L+ G
Sbjct: 173 AIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 219
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172
VA S D + +A G D+ V ++ L+ K H + +A+S +G LV+ ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR 513
Query: 173 ELQCWDPQTG--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-- 228
++ + N + H + +SW P ++ R + S D +W+++
Sbjct: 514 KVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV-----RLATGSLDNSVIVWNMNKP 568
Query: 229 LRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWE 267
+I H ++ V V W + I + QD IK W
Sbjct: 569 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 608
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 15/128 (11%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC---TGHKNWVLCIAWSADGK 163
H + SVAFS +G L + V + + + T H V C++WS D
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 164 HLVSGSKAGELQCWDPQTGKPSGNPL---SGHK-KWITGISWEPVHLNAPCRRFVSASKD 219
L +GS + W+ KPS +P+ H + + W LN VSA +D
Sbjct: 550 RLATGSLDNSVIVWN--MNKPSDHPIIIKGAHAMSSVNSVIW----LNETT--IVSAGQD 601
Query: 220 GDARIWDV 227
+ + W+V
Sbjct: 602 SNIKFWNV 609
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 114/274 (41%), Gaps = 54/274 (19%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
++GG G + TG +C IK+ + R + + H + + S++ + FD+T K
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
+ P+ E R ++ +G N L+S SDD T+ LW+ P K
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
K TGH +V V + S + D+ + +W+ TT K + H V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEV- 278
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q 465
C+S +S +L +GS D T+ +WD+R KLK
Sbjct: 279 -----------------------NCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLH 313
Query: 466 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
H DE+F V WSP E + AS G DR L +W
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
+ SW P N P S S+D +IW ++
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIMQIWQMA 407
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLMIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH V +A S + S S D T+RLWDL T T + GH++ V +A+S D +
Sbjct: 72 LTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 164 HLVSGSKAGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPVHLNAP-----CRRFVSAS 217
++S E++ W+ K S H W++ + + P+ +A F S
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE 276
DG ++W+ + + H V + +G I TG +D + +W+ +
Sbjct: 192 WDGRLKVWNTNFQ-IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Query: 277 LKGHGHWVNSLALS 290
G +N +A +
Sbjct: 251 EFDAGSTINQIAFN 264
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 34/200 (17%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+SGS D T+ +W+ +Q P +TGH V+ + S + + S+S+DK+++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLR 101
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRF-----------------------ELIYCFRYPSN- 421
LW+ TG F GH VY + F E + N
Sbjct: 102 LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENH 161
Query: 422 ---FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478
CV S + S D LKVW+ Q ++ H V +
Sbjct: 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYTFKAHESNVNHLS 220
Query: 479 WSPDGEKVASGGKDRVLKLW 498
SP+G+ +A+GGKD+ L +W
Sbjct: 221 ISPNGKYIATGGKDKKLLIW 240
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/386 (21%), Positives = 153/386 (39%), Gaps = 91/386 (23%)
Query: 104 IAGHTEAVLSV--AFS----PDGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHK 150
+ GH++ V S+ FS D L SGS D TV +W L + P TGH
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
++V +A S + +S S L+ WD +TG + GH+ + +++ P +
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTG-TTYKRFVGHQSEVYSVAFSPDN----- 130
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ-------- 259
R+ +SA + + ++W++ L +C + H+ V+CV++ ++ + ++
Sbjct: 131 RQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYS--PIMKSANKVQPFAPYF 187
Query: 260 -----DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314
D +KVW T ++ K H VN L++S GK
Sbjct: 188 ASVGWDGRLKVW-NTNFQIRYTFKAHESNVNHLSISP-----------NGK--------- 226
Query: 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374
+ +G D + +W+ P+ R +N + F+P QW
Sbjct: 227 ----------------YIATGGKDKKLLIWDILNLTYPQ-REFDAGSTINQIAFNPKLQW 269
Query: 375 VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434
VA + D+ +K++N T V P+ + + + P C SL
Sbjct: 270 VAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQK---GKNPQ----------CTSL 315
Query: 435 YSWSADSRLLLSGSKDSTLKVWDIRT 460
+W+A + L +G D ++ + T
Sbjct: 316 -AWNALGKKLFAGFTDGVIRTFSFET 340
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 41/108 (37%), Gaps = 49/108 (45%)
Query: 440 DSRLLLSGSKDS------------------------------------------------ 451
DS +L+SGS+D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 452 -TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
TL++WD+RT + GH EV++V +SPD ++ S G +R +KLW
Sbjct: 98 KTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137
T H V ++ SP+G+ +A+G D + +WD+
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 113/274 (41%), Gaps = 54/274 (19%)
Query: 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306
++GG G + TG +C IK+ + R + H + + S++ + FD+T K
Sbjct: 106 EFGGFGSV-TGKIECEIKINHEGEVNRARYXPQNPHIIATKTPSSDVLV----FDYT-KH 159
Query: 307 YSSPE---EMKKAALERYNKIKG-------NAPERLVSGSDDFTMFLWE----PAVSK-- 350
+ P+ E R ++ +G N L+S SDD T+ LW+ P K
Sbjct: 160 PAKPDPSGECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIV 219
Query: 351 QPKTRMTGHQQLVNHV-YFSPDGQWVASASFDKSIKLWN---GTTGKFVAVFRGHVGPVY 406
K TGH +V V + S + D+ + +W+ TT K + H V
Sbjct: 220 DAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEV- 278
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK-Q 465
C+S +S +L +GS D T+ +WD+R KLK
Sbjct: 279 -----------------------NCLSFNPYS--EFILATGSADKTVALWDLRNLKLKLH 313
Query: 466 DLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
H DE+F V WSP E + AS G DR L +W
Sbjct: 314 TFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL-NTQTPMFKCTGHK 150
R ++ S + HT V ++F+P LA+GS D TV LWDL N + + HK
Sbjct: 260 RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHK 319
Query: 151 NWVLCIAWSADGKHLVSG------------SKAGELQ-CWDPQTGKPSGNPL-SGHKKWI 196
+ + + WS + +++ SK GE Q D + G P + GH I
Sbjct: 320 DEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKI 379
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIW 225
+ SW P N P S S+D +IW
Sbjct: 380 SDFSWNP---NEPW-VICSVSEDNIXQIW 404
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 69/170 (40%), Gaps = 33/170 (19%)
Query: 122 QLASGSGDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSKAG-- 172
L S S D TV LWD+N K TGH V +AW HL+ S G
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAW-----HLLHESLFGSV 248
Query: 173 ----ELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA--SKDGDAR 223
+L WD + T KPS + + H + +S+ P F+ A S D
Sbjct: 249 ADDQKLXIWDTRSNTTSKPS-HLVDAHTAEVNCLSFNPY------SEFILATGSADKTVA 301
Query: 224 IWDV-SLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQ 270
+WD+ +L+ + H + V W + ++ + D + VW+ ++
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSK 351
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 90/212 (42%), Gaps = 11/212 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL- 165
H + V +V+ G Q SGS D +++WDL Q + H V C+A S +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-TGISWEPVHLNAPCRRFVSASKDGDARI 224
+S S+ + WD + KP+ ++ T ++W P FV ++G +
Sbjct: 186 LSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEV----FVFGDENGTVSL 241
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--SQDCTIKVWETTQGKLIRELKGHGH 282
D CV+ + H+ VT + + V + S+DC++ V +++ +L R + H
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD 300
Query: 283 WVNSLALS--TEYALRTGAFDHTGKQYSSPEE 312
+V S L T +DH + P E
Sbjct: 301 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
+SGSKD +KVWD+ Q + HA +V V SP + V S +D + LW
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 70/163 (42%), Gaps = 22/163 (13%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE---- 411
GHQ+ V V +SP G ++ASASFD + +W F V GH V + +
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 412 -LIYCFRYPSNFYCVVD----MSCCMSLYS---------WSADSRLLLSGSKDSTLKVWD 457
L C R S + VD C L S W LL S S D T+K++
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYR 178
Query: 458 IRTQK--LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L GH V+++ + P G+++AS DR +++W
Sbjct: 179 EEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 102/235 (43%), Gaps = 29/235 (12%)
Query: 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT---GHKNWVLCIAWSADGKHLVSGSK 170
+A++P G LAS GD +R+W + + K GH+ V +AWS G +L S S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 171 AGELQCWDP-QTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVS 228
W Q L GH+ + ++W P +L A C S+D +W+V
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC------SRDKSVWVWEVD 135
Query: 229 LR---KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLI--RELKGHGH 282
+CV L+ HT V V W ++ + S D T+K++ + + L+GH
Sbjct: 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Query: 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337
V SL AFD +G++ +S + + + R + GN SGSD
Sbjct: 196 TVWSL-----------AFDPSGQRLASCSDDRTVRIWR-QYLPGNEQGVACSGSD 238
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 16/170 (9%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD 161
GH V VA+SP G LAS S D T +W N F+C GH+N V +AW+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD--FECVTTLEGHENEVKSVAWAPS 116
Query: 162 GKHLVSGSKAGELQCW--DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
G L + S+ + W D + + L+ H + + + W P SAS D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-----ELLASASYD 171
Query: 220 GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW 266
+++ V C L GH V + + G + + S D T+++W
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 92/224 (41%), Gaps = 36/224 (16%)
Query: 66 PLGSYLEKHKVSVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLAS 125
P G+YL S + I + Q F C T+ GH V SVA++P G LA+
Sbjct: 71 PCGNYLAS--ASFDATTCIWKKNQDDFE------CVTTLEGHENEVKSVAWAPSGNLLAT 122
Query: 126 GSGDTTVRLWDLNTQTPMFKC----TGHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQ 180
S D +V +W+++ + ++C H V + W + L S S ++ + + +
Sbjct: 123 CSRDKSVWVWEVDEEDE-YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---------- 230
L GH+ + ++++P +R S S D RIW L
Sbjct: 182 DDWVCCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGNEQGVACSG 236
Query: 231 -----KCVICLSG-HTLAVTCVKWGG-DGVIYTGSQDCTIKVWE 267
KC+ LSG H+ + + W G + T D I+V++
Sbjct: 237 SDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 32/136 (23%)
Query: 368 FSPDGQWVASASFDKSIKLWNGTTGKFVA---VFRGHVGPVYQIRFELIYCFRYPSNFYC 424
++P G +AS D+ I++W ++ + GH V ++
Sbjct: 24 WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKV---------------- 67
Query: 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK--QDLPGHADEVFAVDWSPD 482
+WS L S S D+T +W + L GH +EV +V W+P
Sbjct: 68 -----------AWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 483 GEKVASGGKDRVLKLW 498
G +A+ +D+ + +W
Sbjct: 117 GNLLATCSRDKSVWVW 132
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 28/181 (15%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLW------DLNTQTPMFKCT-GHKNWVLCIAW 158
H +A+ SVA+ P LA+GS D+TV +W D + + GH+N V +AW
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 159 SADGKHLVSGSKAGELQCWD-PQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVS 215
S DG +L + S+ + W+ ++G+ + L H + + + W P S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-----ALLAS 170
Query: 216 ASKDGDARIWD--VSLRKCVICLSGHTLAVTCVKWGGD-----GV--IYTGSQDCTIKVW 266
+S D RIW +CV L+GH V W D GV + +GS D T++VW
Sbjct: 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVW 226
Query: 267 E 267
+
Sbjct: 227 K 227
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 20/211 (9%)
Query: 77 SVEKVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136
S + +SI + ++ R ++ A I GH V VA+S DG LA+ S D +V +W+
Sbjct: 77 SFDSTVSIWAKEESADRTFEMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135
Query: 137 LNTQTPMFKCTG----HKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNPLSG 191
+ ++C H V + W L S S ++ W D L+G
Sbjct: 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG 195
Query: 192 HKKWITGISWEP-VHLNAPCRRFVSASKDGDARIW-----DVSLRKCVICLS----GHTL 241
H+ G W R S S D R+W D ++ +C + H
Sbjct: 196 HE----GTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251
Query: 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272
V V WG +G+I + D + V+E G+
Sbjct: 252 QVYNVAWGFNGLIASVGADGVLAVYEEVDGE 282
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 39/205 (19%)
Query: 332 LVSGSDDFTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L +GS D T+ +W S M GH+ V V +S DG ++A+ S DKS+
Sbjct: 73 LAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVW 132
Query: 386 LW----NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV--------DMSCCMS 433
+W +G + ++V + H V + + S++ V D C
Sbjct: 133 IWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV 192
Query: 434 LYS-----WSADSR------LLLSGSKDSTLKVW--------DIRTQKLKQDLPG-HADE 473
L WS+D L SGS DST++VW D + + LP H +
Sbjct: 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQ 252
Query: 474 VFAVDWSPDGEKVASGGKDRVLKLW 498
V+ V W +G +AS G D VL ++
Sbjct: 253 VYNVAWGFNG-LIASVGADGVLAVY 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/256 (21%), Positives = 94/256 (36%), Gaps = 58/256 (22%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRL----WDLNTQTPMFKCTGHKNWVLCIAWSADG 162
+ E + S FS LA+GS D ++L +D T + T HK + +AW
Sbjct: 13 YKEKIWSFDFSQ--GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT 70
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSA 216
L +GS + W + + GH+ + G++W + +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW-----SNDGYYLATC 125
Query: 217 SKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQG 271
S+D IW+ +C+ L H+ V V W + ++ + S D T+++W+
Sbjct: 126 SRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
Query: 272 --KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329
+ + L GH S+++ G F
Sbjct: 186 DWECVAVLNGH----EGTVWSSDFDKTEGVF----------------------------- 212
Query: 330 ERLVSGSDDFTMFLWE 345
RL SGSDD T+ +W+
Sbjct: 213 -RLCSGSDDSTVRVWK 227
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 47/196 (23%)
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---- 392
DDFT+ T H++ + V + P +A+ SFD ++ +W
Sbjct: 44 DDFTLI---------DVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRT 94
Query: 393 ---KFVAVFRGHVGPVYQIR-----FELIYCFRYPSNFYCVVDMSC----CMSLYS---- 436
+A+ GH V + + L C R S + D S C+S+
Sbjct: 95 FEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQ 154
Query: 437 ------WSADSRLLLSGSKDSTLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEK--- 485
W LL S S D T+++W + L GH V WS D +K
Sbjct: 155 DVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTV----WSSDFDKTEG 210
Query: 486 ---VASGGKDRVLKLW 498
+ SG D +++W
Sbjct: 211 VFRLCSGSDDSTVRVW 226
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 69/189 (36%), Gaps = 29/189 (15%)
Query: 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW 158
C + + H++ V V + P LAS S D TVR+W ++C N W
Sbjct: 144 ECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW--KDYDDDWECVAVLNGHEGTVW 201
Query: 159 SADGK------HLVSGSKAGELQCW--------DPQTGKPSGNPLSGHKKWITGISWE-- 202
S+D L SGS ++ W D Q HK+ + ++W
Sbjct: 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN 261
Query: 203 --PVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW---GGDGVIYTG 257
+ A V DG+ ++ K +C + + V VKW G ++ TG
Sbjct: 262 GLIASVGADGVLAVYEEVDGEWKV----FAKRALCHGVYEINV--VKWLELNGKTILATG 315
Query: 258 SQDCTIKVW 266
D + W
Sbjct: 316 GDDGIVNFW 324
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 93/222 (41%), Gaps = 19/222 (8%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN---TQTPM--FKCTGHKNWVLCIAWSAD 161
H E V +V S R + +G G V++WD++ ++P+ C N++ D
Sbjct: 50 HGEVVCAVTISNPTRHVYTG-GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPD 108
Query: 162 GKHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L+ G +A L WD P L+ ++ P + S DG
Sbjct: 109 GCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDG 163
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279
+ +WD+ + V GHT +C+ DG ++TG D T++ W+ +G+ +++
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ--- 220
Query: 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
H S S Y TG + G + S+ E + ++Y
Sbjct: 221 --HDFTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY 259
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 96 PVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC 155
P R A + A ++A SPD + S D + +WDL+ QT + + GH + C
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC 188
Query: 156 IAWSADGKHLVSGSKAGELQCWDPQTGK 183
I S DG L +G ++ WD + G+
Sbjct: 189 IDISNDGTKLWTGGLDNTVRSWDLREGR 216
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497
S DS++ S D + VWD+ Q L + GH D +D S DG K+ +GG D ++
Sbjct: 150 SPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS 209
Query: 498 W 498
W
Sbjct: 210 W 210
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 31/160 (19%)
Query: 332 LVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
L+ G + T+ +W+ A + + K +T + SPD + S D +I +W+
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH 171
Query: 391 TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450
V F+GH D + C+ + S D L +G D
Sbjct: 172 NQTLVRQFQGH------------------------TDGASCIDI---SNDGTKLWTGGLD 204
Query: 451 STLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASG 489
+T++ WD+R ++L+Q ++F++ + P GE +A G
Sbjct: 205 NTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVG 242
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 440 DSRLLLSGSKDSTLKVWDIR--TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497
D L+ G + STL +WD+ T ++K +L A +A+ SPD + S D + +
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAV 167
Query: 498 W 498
W
Sbjct: 168 W 168
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 35/247 (14%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKC-------------TGHKN 151
H ++SV ++ DG + S + LW++ + T M F+ +G +
Sbjct: 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGS 207
Query: 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ + W D K ++ G K G + + P+G L GH I+ + N +
Sbjct: 208 LGVDVEWVDDDKFVIPGPK-GAIFVYQITEKTPTG-KLIGHHGPIS-----VLEFNDTNK 260
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG 271
+SAS DG RIW C GH+ ++ W GD + + S D ++++W Q
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320
Query: 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331
L+ +L++ + G G++Y+ + Y+ K N+ R
Sbjct: 321 TLL-----------ALSIVDGVPIFAGRISQDGQKYAVA--FMDGQVNVYDLKKLNSKSR 367
Query: 332 LVSGSDD 338
+ G+ D
Sbjct: 368 SLYGNRD 374
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/345 (22%), Positives = 132/345 (38%), Gaps = 51/345 (14%)
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210
N V C+AWS DG +V+G + GEL+ W+ +TG N L+ H+ I + W N
Sbjct: 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKW-----NKDG 161
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI----YTGSQDCTIKV- 265
+S + +W+V +SG + +K G I ++G + V
Sbjct: 162 THIISMDVENVTILWNV--------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE 213
Query: 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
W +I KG + + TGK + NK+
Sbjct: 214 WVDDDKFVIPGPKG-----------AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKL- 261
Query: 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
L+S SDD T+ +W + + GH Q + + D + V S S D S++
Sbjct: 262 ------LLSASDDGTLRIWHGG-NGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS---WSADSR 442
LW+ +A+ P++ R Y V M +++Y ++ SR
Sbjct: 314 LWSLKQNTLLALSIVDGVPIFAGRIS------QDGQKYAVAFMDGQVNVYDLKKLNSKSR 367
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 487
L G++D L I Q + D +F + W+ G K++
Sbjct: 368 SLY-GNRDGILNPLPIPLYASYQSSQDN-DYIFDLSWNCAGNKIS 410
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491
+S+ ++ ++LLLS S D TL++W + GH+ + + W D +KV S
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSM 308
Query: 492 DRVLKLW 498
D ++LW
Sbjct: 309 DGSVRLW 315
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467
I EL + F ++ + C++ WS D +++G ++ L++W+ +T L L
Sbjct: 90 IIAELRHPFALSASSGKTTNQVTCLA---WSHDGNSIVTGVENGELRLWN-KTGALLNVL 145
Query: 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
H + +V W+ DG + S + V LW
Sbjct: 146 NFHRAPIVSVKWNKDGTHIISMDVENVTILW 176
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 80/188 (42%), Gaps = 25/188 (13%)
Query: 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDL----------------NTQTP 142
CS + GH + +L+V++SP LA+ S D+ V+LWD+ +Q
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWE 202
T H V + +++DG HL++ ++ W+ G+ N L + K + S +
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE---NTLVNYGK-VCNNSKK 293
Query: 203 PVHLNAPC---RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGS 258
+ C FV ++ V + + L GH V C + + +Y+GS
Sbjct: 294 GLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 259 QDCTIKVW 266
+DC I W
Sbjct: 354 RDCNILAW 361
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 359 HQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417
H+ V V + P D S+SFDK++K+W+ T + VF E +Y
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFE---------ETVY--- 145
Query: 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV 477
S+ V C L+ G++ +++ D+++ L GH E+ AV
Sbjct: 146 --SHHMSPVSTKHC-----------LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV 192
Query: 478 DWSPDGEKV-ASGGKDRVLKLW 498
WSP + + A+ D +KLW
Sbjct: 193 SWSPRYDYILATASADSRVKLW 214
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 17/141 (12%)
Query: 107 HTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTP---MFKCTGHKNWVLCIAWSAD 161
H +V +V + P D S S D T+++WD NT QT F+ T + + + ++
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS---- 153
Query: 162 GKH--LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219
KH + G++ ++Q D ++G S + L GH++ I +SW P + +AS D
Sbjct: 154 TKHCLVAVGTRGPKVQLCDLKSGSCS-HILQGHRQEILAVSWSPRYDYI----LATASAD 208
Query: 220 GDARIWDVSLRK-CVICLSGH 239
++WDV C+I L H
Sbjct: 209 SRVKLWDVRRASGCLITLDQH 229
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 65/313 (20%), Positives = 118/313 (37%), Gaps = 50/313 (15%)
Query: 119 DGRQLASGSGDTTVRLWDL--NTQTPMFKCTG-----------HKNWVLCIAW-SADGKH 164
+GR + SG D + L+DL +++ + C H+ V + W D
Sbjct: 55 EGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM 114
Query: 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224
S S L+ WD T + + + ++ + PV C V ++ ++
Sbjct: 115 FTSSSFDKTLKVWDTNTLQTA--DVFNFEETVYSHHMSPVS-TKHCLVAV-GTRGPKVQL 170
Query: 225 WDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQ------------ 270
D+ C L GH + V W D ++ T S D +K+W+ +
Sbjct: 171 CDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230
Query: 271 GKLIRELK----GHGHWVNSLALSTE-YALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325
GK + ++ H VN L +++ L T D+ + ++S + L Y K+
Sbjct: 231 GKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN--GENTLVNYGKVC 288
Query: 326 GNAPERL-----VSGSDDFTMFLWEPAV------SKQPKTRMTGHQQLVNHVYFSPDGQW 374
N+ + L S +F + + S + T + GH + V+ F + Q
Sbjct: 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQE 348
Query: 375 VASASFDKSIKLW 387
+ S S D +I W
Sbjct: 349 LYSGSRDCNILAW 361
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 47/224 (20%)
Query: 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTC 245
H+ + + W P F S+S D ++WD + + + H ++
Sbjct: 98 HRYSVETVQWYPHDTGM----FTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVS 153
Query: 246 VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS--TEYALRTGAFDHT 303
K ++ G++ +++ + G L+GH + +++ S +Y L T + D
Sbjct: 154 TK---HCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSR 210
Query: 304 GKQYSSPEEMKKAA-----LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358
K + ++++A+ L+++N K A E + T
Sbjct: 211 VKLW----DVRRASGCLITLDQHNGKKSQAVE-----------------------SANTA 243
Query: 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402
H VN + F+ DG + + D ++LWN + G+ V G V
Sbjct: 244 HNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKV 287
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 86/225 (38%), Gaps = 27/225 (12%)
Query: 101 SATIAGHTEAVLSVAFSPDGRQ---LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
+A + E V S SP + +A G+ V+L DL + + GH+ +L ++
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193
Query: 158 WSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGH--KKWITGISWEPVH---LNAPC- 210
WS ++++ + A ++ WD + L H KK S H +N C
Sbjct: 194 WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253
Query: 211 ----RRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVKWGGDGVIYTG 257
++ D R+W+ S + C G V+C + G
Sbjct: 254 TSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG 313
Query: 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY-ALRTGAFD 301
S TI V+ G+ I LKGH V+ + + L +G+ D
Sbjct: 314 S---TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRD 355
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
D LLLS SKD L++W+I+T L + GH DEV + D+ GEK+ S G D LK
Sbjct: 163 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 222
Query: 497 LW 498
LW
Sbjct: 223 LW 224
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 198
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 199 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 238
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
D LLLS SKD L++W+I+T L + GH DEV + D+ GEK+ S G D LK
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 497 LW 498
LW
Sbjct: 186 LW 187
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 162 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
D LLLS SKD L++W+I+T L + GH DEV + D+ GEK+ S G D LK
Sbjct: 122 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 181
Query: 497 LW 498
LW
Sbjct: 182 LW 183
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 157
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 158 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 197
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
D LLLS SKD L++W+I+T L + GH DEV + D+ GEK+ S G D LK
Sbjct: 127 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 186
Query: 497 LW 498
LW
Sbjct: 187 LW 188
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 163 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 202
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
D LLLS SKD L++W+I+T L + GH DEV + D+ GEK+ S G D LK
Sbjct: 126 DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK 185
Query: 497 LW 498
LW
Sbjct: 186 LW 187
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 16/110 (14%)
Query: 348 VSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVF---RGHVG 403
++ Q GH +N + F P D + S S D +++LWN T VA+F GH
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 161
Query: 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCM--SLYSWSADSRLLLSGSKDS 451
V ++L+ MSC M SL W +S+ +++ K+S
Sbjct: 162 EVLSADYDLL----------GEKIMSCGMDHSLKLWRINSKRMMNAIKES 201
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 73/187 (39%), Gaps = 52/187 (27%)
Query: 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI-----R 409
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +
Sbjct: 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK 65
Query: 410 FELIYCFRYPSNFYCVVDMSCCM--------------SLYSWSADSR---------LLLS 446
F I C D + +++S S +S LLL
Sbjct: 66 FGTILA-------SCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLV 118
Query: 447 GSKDSTLKVWDIRTQKLKQD--LPGHADEVFAVDWSP-----DGE--------KVASGGK 491
S D + V + + + HA V + W+P DGE K +GG
Sbjct: 119 ASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGA 178
Query: 492 DRVLKLW 498
D ++K+W
Sbjct: 179 DNLVKIW 185
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 438 SADSRLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGG 490
+ +SR ++G D+ +K+W D +T L+ L GH+D V V WSP +AS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS 226
Query: 491 KDRVLKLW 498
+DR +W
Sbjct: 227 QDRTCIIW 234
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 26/146 (17%)
Query: 102 ATIAGHTEAVLSVAFSPDGR----QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
A A H+ +V SV ++P +AS G +V + N T H V +
Sbjct: 93 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 152
Query: 158 WS-----ADGKH--------LVSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGIS 200
W+ DG+H V+G ++ W D QT L GH W+ ++
Sbjct: 153 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST-LEGHSDWVRDVA 211
Query: 201 WEPVHLNAPCRRFV-SASKDGDARIW 225
W P L R ++ S S+D IW
Sbjct: 212 WSPTVL---LRSYLASVSQDRTCIIW 234
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 51/257 (19%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
RRF+ + +GD ++ D + H +T +K+ G+ +I + SQD +K+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 168
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G R L GH V +A+ ++R
Sbjct: 169 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 192
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
++S S D T+ LWE T + H + + F + + S K
Sbjct: 193 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 252
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
L GT GK+V GHV V + F + PS F C C SL ++
Sbjct: 253 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 305
Query: 444 LLSGSKDSTLKVWDIRT 460
+ +G ++ L WD+R+
Sbjct: 306 IYAGYENGMLAQWDLRS 322
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 197 LSASLDGTIRLWECGTG 213
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 170 DGS---NPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 213
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 214 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 271
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 272 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 327
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 328 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 360
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143
T+ GH V +A GR + S S D T+RLW+ T T +
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 444 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L+S S+D LK+W ++ + L GH V + G V S D ++LW
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
R + G+ + +KV D ++ H E+ + + P GE + S +D LK+W
Sbjct: 110 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 166
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/257 (22%), Positives = 96/257 (37%), Gaps = 51/257 (19%)
Query: 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWET 268
RRF+ + +GD ++ D + H +T +K+ G+ +I + SQD +K+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALI-SSSQDMQLKIWSV 165
Query: 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328
G R L GH V +A+ ++R
Sbjct: 166 KDGSNPRTLIGHRATVTDIAI----------------------------IDR-------- 189
Query: 329 PERLVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385
++S S D T+ LWE T + H + + F + + S K
Sbjct: 190 GRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNN 249
Query: 386 LWNGTTGKFVAVFRGHVGPVYQIR--FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443
L GT GK+V GHV V + F + PS F C C SL ++
Sbjct: 250 LEFGTYGKYVIA--GHVSGVITVHNVFSKEQTIQLPSKFTC-----SCNSLTVDGNNANY 302
Query: 444 LLSGSKDSTLKVWDIRT 460
+ +G ++ L WD+R+
Sbjct: 303 IYAGYENGMLAQWDLRS 319
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL 165
H + + F P G L S S D +++W + + GH+ V IA G+++
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 166 VSGSKAGELQCWDPQTG 182
+S S G ++ W+ TG
Sbjct: 194 LSASLDGTIRLWECGTG 210
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 112/274 (40%), Gaps = 31/274 (11%)
Query: 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180
R+ G+ + +++ D N H + + + + G+ L+S S+ +L+ W +
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 166
Query: 181 TGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238
G NP L GH+ +T I+ + R +SAS DG R+W+ C +G
Sbjct: 167 DGS---NPRTLIGHRATVTDIA-----IIDRGRNVLSASLDGTIRLWE--------CGTG 210
Query: 239 HTLAVTCVKWG-GDGV----IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEY 293
T+ K DGV ++ G+ ++ + + L E +G +V + +S
Sbjct: 211 TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNL--EFGTYGKYVIAGHVSGVI 268
Query: 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353
+ Q S +L + GN + +G ++ + W+ + P
Sbjct: 269 TVHNVFSKEQTIQLPSKFTCSCNSL----TVDGNNANYIYAGYENGMLAQWDLRSPECPV 324
Query: 354 TRMTGHQQL-VNHVYFSPDGQWVASASFDKSIKL 386
++ +N+VYF+ G S+ FD SIKL
Sbjct: 325 GEFLINEGTPINNVYFAA-GALFVSSGFDTSIKL 357
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143
T+ GH V +A GR + S S D T+RLW+ T T +
Sbjct: 173 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 213
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 444 LLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L+S S+D LK+W ++ + L GH V + G V S D ++LW
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
R + G+ + +KV D ++ H E+ + + P GE + S +D LK+W
Sbjct: 107 RRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW 163
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 125
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 126 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 185
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 186 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 222
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 51/232 (21%)
Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFS 369
E + A L+ Y K RL + S D T+ ++E + + +TGH+ V V ++
Sbjct: 12 ELIHDAVLDYYGK-------RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 64
Query: 370 PD--GQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE-------------- 411
G +AS S+D + +W G++ +AV H V +++
Sbjct: 65 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 124
Query: 412 -LIYCFRYPSNFYC---VVDMSCC-MSLYSW-------------SADSRLLLSGSKDSTL 453
+ + N ++D ++ SW + +SR ++G D+ +
Sbjct: 125 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 184
Query: 454 KVW----DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 498
K+W D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 185 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI-----RF 410
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +F
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 411 ELIYC----------FRYPSNFYCVVDM----SCCMSLYSWSADSR--LLLSGSKDSTLK 454
I ++ + + + + S ++ W+ LLL S D +
Sbjct: 69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128
Query: 455 VWDIRTQKLKQD--LPGHADEVFAVDWSP-----DGE--------KVASGGKDRVLKLW 498
V + + + HA V + W+P DGE K +GG D ++K+W
Sbjct: 129 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 26/146 (17%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA 157
A A H+ +V SV ++P +AS G +V + N T H V +
Sbjct: 95 AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSAS 154
Query: 158 WS-----ADGKH--------LVSGSKAGELQCW----DPQTGKPSGNPLSGHKKWITGIS 200
W+ DG+H V+G ++ W D QT + L GH W+ ++
Sbjct: 155 WAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE-STLEGHSDWVRDVA 213
Query: 201 WEPVHLNAPCRRFV-SASKDGDARIW 225
W P L R ++ S S+D IW
Sbjct: 214 WSPTVL---LRSYLASVSQDRTCIIW 236
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 130/332 (39%), Gaps = 53/332 (15%)
Query: 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW--DVSLRKCVIC 235
DP TG L GH + + S S+DG R+W D V+
Sbjct: 3 DPFTGYQLSATLKGHD------QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY 56
Query: 236 LSGHTLAVTCVKWGGDGVIYTGSQDCTIK---VWETTQGKLIRELKGHGHWVNSLALSTE 292
L C + +++ G +D I ++ T+ + L GH V SL+
Sbjct: 57 TGQGFLNSVCYDSEKELLLF-GGKDTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDG 115
Query: 293 YALRTGAFDHTGKQYSSPEEMKKAALERYN------KIKGNAPERLVSGSDDFTMFLWEP 346
+ +G++D T K + + L+ +N K+ + + ++ S D T+ LW+
Sbjct: 116 VVI-SGSWDKTAKVWKEGSLVYN--LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN 172
Query: 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406
K KT H +V H+ DG ++ S S D IKL + TG + + GH
Sbjct: 173 --DKVIKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHE---- 225
Query: 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 466
+YC + N D+ C +D T+++W LKQ
Sbjct: 226 ----SFVYCIKLLPNG----DIVSC----------------GEDRTVRIWSKENGSLKQV 261
Query: 467 LPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
+ A +++VD +G+ + G D +++++
Sbjct: 262 ITLPAISIWSVDCXSNGDIIV-GSSDNLVRIF 292
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 15/173 (8%)
Query: 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162
T+ GH V S++F DG + SGS D T ++W + + W + ++
Sbjct: 99 TLIGHQGNVCSLSF-QDG-VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSEN 156
Query: 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR--RFVSASKDG 220
K L + S ++ W Q K K +GI + V A F+S S DG
Sbjct: 157 KFL-TASADKTIKLW--QNDKV--------IKTFSGIHNDVVRHLAVVDDGHFISCSNDG 205
Query: 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273
++ D + GH V C+K +G I + +D T+++W G L
Sbjct: 206 LIKLVDXHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 13/219 (5%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV 166
H + V +++ DG Q SG D +V++WDL+ + + H + V C+A + GK +
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA-ACPGKDTI 196
Query: 167 --SGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223
S + G + WD + KP+ T ++W P + F + G+
Sbjct: 197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDT----FACGDETGNVS 252
Query: 224 IWDVSLRKCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281
+ ++ + H+ +T + + + + S+DCT+ V + ++ R+L H
Sbjct: 253 LVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-HR 311
Query: 282 HWVNSLALS--TEYALRTGAFDHTGKQYSSPEEMKKAAL 318
+V +A S T +DH + P E + L
Sbjct: 312 DFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTENL 350
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486
D+ +S++S D +SG KD ++KVWD+ + + + H+ EV V P + +
Sbjct: 140 DIVKTLSVFS---DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 487 -ASGGKDRVLKLW 498
S G+D + LW
Sbjct: 197 FLSCGEDGRILLW 209
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G+++A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPM--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 95/232 (40%), Gaps = 51/232 (21%)
Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFS 369
E + A ++ Y K R+ + S D T+ ++E + + +TGH+ V V ++
Sbjct: 10 EMIHDAVMDYYGK-------RMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 370 PD--GQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE-------------- 411
G +AS S+D + +W G++ +AV H V +++
Sbjct: 63 HPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD 122
Query: 412 -LIYCFRYPSNFYC---VVDMSCC-MSLYSW-------------SADSRLLLSGSKDSTL 453
+ + N ++D ++ SW + +SR ++G D+ +
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 454 KVW----DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 498
K+W D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI-----RF 410
H ++++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +F
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 411 ELIYC----------FRYPSNFYCVVDM----SCCMSLYSWSADSR--LLLSGSKDSTLK 454
I ++ + + + + S ++ W+ +LL S D +
Sbjct: 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126
Query: 455 VWDIRTQKLKQD--LPGHADEVFAVDWSP-----DGE--------KVASGGKDRVLKLW 498
V + + + HA V + W+P DGE K +GG D ++K+W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++LA+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGPL--LLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 95/232 (40%), Gaps = 51/232 (21%)
Query: 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGHQQLVNHVYFS 369
E + A L+ Y K RL + S D T+ ++E + + +TGH+ V V ++
Sbjct: 10 ELIHDAVLDYYGK-------RLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWA 62
Query: 370 PD--GQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFE-------------- 411
G +AS S+D + +W G++ +AV H V +++
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
Query: 412 -LIYCFRYPSNFYC---VVDMSCC-MSLYSW-------------SADSRLLLSGSKDSTL 453
+ + N ++D ++ SW + +SR ++G D+ +
Sbjct: 123 GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLV 182
Query: 454 KVW----DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGGKDRVLKLW 498
K+W D +T L+ L GH+D V V WSP +AS +DR +W
Sbjct: 183 KIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 74/179 (41%), Gaps = 38/179 (21%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI-----RF 410
H +L++ G+ +A+ S DK+IK++ G T K + GH GPV+++ +F
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 411 ELIYC----------FRYPSNFYCVVDM----SCCMSLYSWSADSR--LLLSGSKDSTLK 454
I ++ + + + + S ++ W+ LLL S D +
Sbjct: 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126
Query: 455 VWDIRTQKLKQD--LPGHADEVFAVDWSP-----DGE--------KVASGGKDRVLKLW 498
V + + + HA V + W+P DGE K +GG D ++K+W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 125/312 (40%), Gaps = 74/312 (23%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
S + + T +S++P + PC + FV DGD+++ V+ +GH + VT
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
VK+ G + +G + + VW T K ++ + + +E+ + G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
++D G++ E + +R N +K + P R ++
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
DD ++ ++ K + T H+Q V V FSPD G++V + D+ I ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
F+ PV F L SW DS+ + D+T+
Sbjct: 241 FLKYIEDDQEPVQGGIFAL-----------------------SW-LDSQKFATVGADATI 276
Query: 454 KVWDIRTQKLKQ 465
+VWD+ T K Q
Sbjct: 277 RVWDVTTSKCVQ 288
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 85/191 (44%), Gaps = 36/191 (18%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFDHTGKQYSS 309
++D ++SS
Sbjct: 354 SYDGRIMEWSS 364
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228
++ + +SGH K IT ++ P+ +S S DG W S
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPL---------ISGSYDGRIMEWSSS 365
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 74/312 (23%)
Query: 190 SGHKKWITGISWEPV--HLNAPCRR--FVSASKDGDARIWDVSLRKCVICLSGH-TLAVT 244
S + + T +S++P + PC + FV DGD+++ V+ +GH + VT
Sbjct: 15 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV------PPVVQFTGHGSSVVT 68
Query: 245 CVKWG---GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG--- 298
VK+ G + +G + + VW T K ++ + + +E+ + G
Sbjct: 69 TVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE--------VNVKSEFQVLAGPIS 120
Query: 299 --AFDHTGKQYSSPEEMK------------------KAALERYNK--IKGNAPERLVSGS 336
++D G++ E + +R N +K + P R +
Sbjct: 121 DISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVG 180
Query: 337 DDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPD-GQWVASASFDKSIKLWNGTTGK 393
DD ++ ++ K + T H+Q V V FSPD G++V + D+ I ++G +G+
Sbjct: 181 DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGE 240
Query: 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453
F+ PV F L SW DS+ + D+T+
Sbjct: 241 FLKYIEDDQEPVQGGIFAL-----------------------SW-LDSQKFATVGADATI 276
Query: 454 KVWDIRTQKLKQ 465
+VWD+ T K Q
Sbjct: 277 RVWDVTTSKCVQ 288
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 81/183 (44%), Gaps = 36/183 (19%)
Query: 140 QTPMFKC-----TGHK--NWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGK------PS 185
Q P FK T HK ++V + +S D G+ +++ ++ C+D ++G+
Sbjct: 189 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDD 248
Query: 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-------ICLSG 238
P+ G I +SW ++F + D R+WDV+ KCV L
Sbjct: 249 QEPVQGG---IFALSW------LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN 299
Query: 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298
+ V G+G I + S D T+ +E ++++ + GH + +L ++ L +G
Sbjct: 300 QQVGVVAT---GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVN---PLISG 353
Query: 299 AFD 301
++D
Sbjct: 354 SYD 356
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK----NWVLCIAWSADGKHLVSGSKAGEL 174
D ++ A+ D T+R+WD+ T + K T K N + + + +G+ ++S S G L
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTL 321
Query: 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
++ + +SGH K IT ++ P+ +S S DG W
Sbjct: 322 NFYELGHDEVL-KTISGHNKGITALTVNPL---------ISGSYDGRIXEW 362
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 82/217 (37%), Gaps = 28/217 (12%)
Query: 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-- 161
H E + G++ A+ S D T++++++ +T TGH+ V + W+
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDG 220
G L S S G++ W + G+ S + H + + W P H P + AS DG
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAP-HEYGP--XLLVASSDG 123
Query: 221 DARIWDVSLRKCV--ICLSGHTLAVTCVKWGGDGV--------------IYTGSQDCTIK 264
+ + I + H + V W + TG D +K
Sbjct: 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVK 183
Query: 265 VWETTQGK----LIRELKGHGHWVNSLALSTEYALRT 297
+W+ L L+GH WV +A S LR+
Sbjct: 184 IWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS 220
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 7/68 (10%)
Query: 438 SADSRLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDWSPD---GEKVASGG 490
+ +SR ++G D+ +K+W D +T L+ L GH+D V V WSP AS
Sbjct: 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVS 226
Query: 491 KDRVLKLW 498
+DR +W
Sbjct: 227 QDRTCIIW 234
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 38/179 (21%)
Query: 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQI-----RF 410
H + ++ G+ A+ S DK+IK++ G T K + GH GPV+++ +F
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 411 ELIYC----------FRYPSNFYCVVDM----SCCMSLYSWSADSR--LLLSGSKDSTLK 454
I ++ + + + + S ++ W+ LL S D +
Sbjct: 67 GTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVS 126
Query: 455 VWDIRTQKLKQD--LPGHADEVFAVDWSP-----DGE--------KVASGGKDRVLKLW 498
V + + + HA V + W+P DGE K +GG D ++K+W
Sbjct: 127 VVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 25/204 (12%)
Query: 102 ATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLN--TQTPMF-------KCTGHKN 151
A + H+ +V +V F+ LASG + + +WD+N T++P + +
Sbjct: 107 ARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166
Query: 152 WVLCIAWSADGKHLVSGSKAGEL-QCWDPQTGKPS-----GNPLSGHKKWITGISWEPVH 205
V+ +AW+ H+ + + + WD + K +P SG K+ ++ + W P +
Sbjct: 167 EVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN 226
Query: 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICL----SGHTLAVTCVKW--GGDGVIYTGSQ 259
R + D D I LR L GH + + W + ++ + +
Sbjct: 227 ---STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGR 283
Query: 260 DCTIKVWETTQGKLIRELKGHGHW 283
D T+ +W + + + G+W
Sbjct: 284 DNTVLLWNPESAEQLSQFPARGNW 307
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTG 164
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKLIRELK 278
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVXGHTAPVLDIAWXPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVH 175
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 37/179 (20%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+W+ TG V V +P Y V WS D L+
Sbjct: 157 LVWDVGTGAAVLTLGPDV---------------HPDTIYSV----------DWSRDGALI 191
Query: 445 LSGSKDSTLKVWDIR--TQKLKQDLPGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 498
+ +D ++V + R T ++D P + +G+ + +G +R + LW
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ-------DLPGHADEVFAVDWSPDGEKV-ASGGK 491
+ ++ SGS+D T+ VW+I L L GH V V W P + V S G
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 492 DRVLKLW 498
D V+ +W
Sbjct: 153 DNVILVW 159
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 27/110 (24%)
Query: 349 SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408
S ++TGH++ + V ++ +G + S S D S +W G+ + GH G ++ I
Sbjct: 21 SHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI 80
Query: 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458
+ CF YCV +GS D ++K+WD+
Sbjct: 81 DVD---CFTK----YCV--------------------TGSADYSIKLWDV 103
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 30/178 (16%)
Query: 139 TQTPMFKCTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI 196
++ P+ K H+ + WS GK++++G K G++ +D + + H+K I
Sbjct: 162 SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSI 221
Query: 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDG 252
+ + + P F+++S+D ++ + DVS L+K +T +T +K +
Sbjct: 222 SDMQFSP-----DLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLK---EF 273
Query: 253 VIYTGSQDCT-IKVWETTQGKL------------IRELKGHGHWVNSLALS---TEYA 294
+I G Q+ + +GK I ++GH +N++A+S T YA
Sbjct: 274 IILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYA 331
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248
L+GH++ +T + + N S SKD A +W + + L GHT + W
Sbjct: 28 LTGHERPLTQVKY-----NKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTI----W 78
Query: 249 GGDGVIYT-----GSQDCTIKVWETTQGKLI 274
D +T GS D +IK+W+ + G+ +
Sbjct: 79 SIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 234 ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS-- 290
I L+GH +T VK+ +G ++++ S+D + VW + G+ + L GH + S+ +
Sbjct: 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85
Query: 291 TEYALRTGAFDHTGK 305
T+Y + TG+ D++ K
Sbjct: 86 TKYCV-TGSADYSIK 99
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496
++ + LL S SKDS+ VW + L GH ++++D + +G D +K
Sbjct: 40 YNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIK 99
Query: 497 LW 498
LW
Sbjct: 100 LW 101
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%)
Query: 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK 163
+ GH + V ++ +G L S S D++ +W + GH + I K
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 164 HLVSGSKAGELQCWDPQTGK 183
+ V+GS ++ WD G+
Sbjct: 88 YCVTGSADYSIKLWDVSNGQ 107
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
Query: 97 VNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWD-------LNTQTPMFKCTG 148
V++ + GHT VL +A+ P + +ASGS D TV +W+ L + P+ G
Sbjct: 70 VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG 129
Query: 149 HKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTG 182
H V +AW ++ L+S + WD TG
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG 164
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELK 278
K V + GHT V + W D VI +GS+DCT+ VWE G L+ L+
Sbjct: 72 KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR 121
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 15/114 (13%)
Query: 180 QTGKPSGN-PL-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LR 230
+TG+ N PL GH + I+W P + N S S+D +W++ LR
Sbjct: 66 KTGRVDKNVPLVCGHTAPVLDIAWCPHNDNV----IASGSEDCTVMVWEIPDGGLVLPLR 121
Query: 231 KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282
+ VI L GHT V V W V+ + D I VW+ G + L H
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH 175
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 37/179 (20%)
Query: 332 LVSGSDDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSI 384
+ SGS+D T+ +WE ++P + GH + V V + P Q V SA D I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444
+W+ TG V V +P Y V WS D L+
Sbjct: 157 LVWDVGTGAAVLTLGPDV---------------HPDTIYSV----------DWSRDGALI 191
Query: 445 LSGSKDSTLKVWDIR--TQKLKQDLPGHADEVFAVDWSPDGEKVASG---GKDRVLKLW 498
+ +D ++V + R T ++D P + +G+ + +G +R + LW
Sbjct: 192 CTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALW 250
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 94 IRPVNRCSATIAGHTEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTG--HK 150
+ P+ T+ GHT+ V VA+ P + L S D + +WD+ T + H
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHP 176
Query: 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182
+ + + WS DG + + + ++ +P+ G
Sbjct: 177 DTIYSVDWSRDGALICTSCRDKRVRVIEPRKG 208
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 440 DSRLLLSGSKDSTLKVWDIRTQKLKQ-------DLPGHADEVFAVDWSPDGEKV-ASGGK 491
+ ++ SGS+D T+ VW+I L L GH V V W P + V S G
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGC 152
Query: 492 DRVLKLW 498
D V+ +W
Sbjct: 153 DNVILVW 159
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 11/130 (8%)
Query: 155 CIAWSAD---GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211
C+++S G L++GS A +++CW+ Q SG + ++ TG + V +
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQD---SGQTIPKAQQMHTGPVLD-VCWSDDGS 99
Query: 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW---GGDGVIYTGSQDCTIKVWET 268
+ +AS D A++WD+S + I ++ H V + W + TGS D T+K W+T
Sbjct: 100 KVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158
Query: 269 TQGKLIRELK 278
+ L+
Sbjct: 159 RSSNPMMVLQ 168
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAW--SADGKH 164
HT VL V +S DG ++ + S D T ++WDL++ + + H V I W + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 165 LVSGSKAGELQCWDPQTGKP 184
+++GS L+ WD ++ P
Sbjct: 144 VMTGSWDKTLKFWDTRSSNP 163
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 29/131 (22%)
Query: 332 LVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389
L++GS + WE S Q PK + H V V +S DG V +AS DK+ K+W+
Sbjct: 57 LIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASCDKTAKMWDL 115
Query: 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449
++ + + + + H PV + I+ + P N+ CV ++GS
Sbjct: 116 SSNQAIQIAQ-HDAPV-----KTIHWIKAP-NYSCV-------------------MTGSW 149
Query: 450 DSTLKVWDIRT 460
D TLK WD R+
Sbjct: 150 DKTLKFWDTRS 160
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVAS 488
C+S + L++GS + ++ W+++ Q + + H V V WS DG KV +
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103
Query: 489 GGKDRVLKLW 498
D+ K+W
Sbjct: 104 ASCDKTAKMW 113
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRV 494
WS D + + S D T K+WD+ + + Q + H V + W +P+ V +G D+
Sbjct: 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152
Query: 495 LKLW 498
LK W
Sbjct: 153 LKFW 156
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query: 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGV 253
I +S+ P L P ++ S D R W+V I HT V V W DG
Sbjct: 42 IGCLSFSPPTL--PGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 254 -IYTGSQDCTIKVWETTQGKLIRELKGHG-----HWVNSLALSTEYALRTGAFDHTGK 305
++T S D T K+W+ + + I+ + HW+ + S + TG++D T K
Sbjct: 100 KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYS---CVMTGSWDKTLK 154
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 248 TEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 308 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 336
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 442 RLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SPD-GEKVASGGKDRVL 495
R + + S D +KV+ D +L H + A+DW SP+ G +AS D+ +
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 496 KLW 498
KLW
Sbjct: 84 KLW 86
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 68 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 127
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 128 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 187
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 188 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 247
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 307
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 308 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 336
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 442 RLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SPD-GEKVASGGKDRVL 495
R + + S D +KV+ D +L H + A+DW SP+ G +AS D+ +
Sbjct: 24 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 83
Query: 496 KLW 498
KLW
Sbjct: 84 KLW 86
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/349 (19%), Positives = 127/349 (36%), Gaps = 83/349 (23%)
Query: 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSA 160
+GH + V V + GR +A+ S D ++++ L+ T ++ + H + ++ I W++
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 161 D--GKHLVSGSKAGELQCW--DPQTGKPSGN------PLSGHKKWITGISWEPVHL---- 206
G+ + S S ++ W DP + SG L+ K + + + P HL
Sbjct: 66 PEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKL 125
Query: 207 ----NAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWG----------- 249
N R A + D R W ++ V+ + + H + C+ W
Sbjct: 126 ACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAV 185
Query: 250 ---GDGVIYTGSQDCTIKVWETTQG--KLIRELK---GHGHWVNSLA------------- 288
+IY +D + V G LIR + G W +A
Sbjct: 186 SALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI 245
Query: 289 ------LSTEYAL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341
L++E +L + FD++ + + E +++ N L+S DD
Sbjct: 246 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNG 305
Query: 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390
+W V ++ G ++SA D ++LW T
Sbjct: 306 EVWS--------------------VSWNLTGTILSSAGDDGKVRLWKAT 334
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 442 RLLLSGSKDSTLKVW----DIRTQKLKQDLPGHADEVFAVDW-SPD-GEKVASGGKDRVL 495
R + + S D +KV+ D +L H + A+DW SP+ G +AS D+ +
Sbjct: 22 RHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTV 81
Query: 496 KLW 498
KLW
Sbjct: 82 KLW 84
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 64/151 (42%), Gaps = 31/151 (20%)
Query: 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQIRF 410
T T H+ +++ G +A+ S D+S+K+++ G +A RGH GPV+Q+
Sbjct: 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQV-- 63
Query: 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW--DIRTQKLKQDLP 468
+ +P +Y +L S S D + +W + T + +
Sbjct: 64 ----AWAHP--------------MY-----GNILASCSYDRKVIIWREENGTWEKSHEHA 100
Query: 469 GHADEVFAVDWSPD--GEKVASGGKDRVLKL 497
GH V +V W+P G +A G D + L
Sbjct: 101 GHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWV------LCIAWSADGKHLVS 167
A S R LA+G + +W+L + P++ GHK + + +V+
Sbjct: 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVT 134
Query: 168 GSKAGELQCWDP-QTGKPSGN--PLSGHKK---WITGISWEPVHLNAPCRRFVSASKDGD 221
GS+ G ++ WDP Q P N P+ G K W N R + +GD
Sbjct: 135 GSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG---NAYNQEERVVCAGYDNGD 191
Query: 222 ARIWDV 227
+++D+
Sbjct: 192 IKLFDL 197
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Query: 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKA 171
A++ + R + +G + ++L+DL ++ T KN V + + LV+ S
Sbjct: 175 AYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLE 233
Query: 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225
G+ +D +T P+ S +K W+ HL F++A G +W
Sbjct: 234 GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASG 489
+S ++W+ D + + + +++ K Q +L H +V VDW+PD ++ +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 70
Query: 490 GKDRVLKLW 498
G DR +W
Sbjct: 71 GTDRNAYVW 79
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASG 489
+S ++W+ D + + + +++ K Q +L H +V +DW+PD ++ +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTC 70
Query: 490 GKDRVLKLW 498
G DR +W
Sbjct: 71 GTDRNAYVW 79
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCR 211
+ C AW+ D + E+ ++ K + L H +TGI W P
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAP-----DSN 65
Query: 212 RFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWG 249
R V+ D +A +W + R K + + A CV+W
Sbjct: 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA 105
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 220 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 279
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 280 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 332
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 210 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 269
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 270 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 323
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 324 KLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 87 QPQAVFRIRPVNRCSA--TIAGHTEAVLSVAFSPDGRQLASGSGDTTV------------ 132
Q + +RP+ + ++ ++ ++ SV FSP G LA +
Sbjct: 210 QISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGE 269
Query: 133 RLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181
R+ L+ T + + H +WV+ ++++ G+ L S G+L+ WD +T
Sbjct: 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 322
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 28/139 (20%)
Query: 123 LASGSGDTTVRLWDLNTQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176
+A+G + TV++ +L+T P++ + N + + +S G L + C
Sbjct: 200 IATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGC 259
Query: 177 ---WDPQTGKPSGNPLS-------------GHKKWITGISWEPVHLNAPCRRFVSASKDG 220
++ + G+ G+ LS H W+ +S+ N SA DG
Sbjct: 260 ITLYETEFGERIGS-LSVPTHSSQASLGEFAHSSWVMSLSF-----NDSGETLCSAGWDG 313
Query: 221 DARIWDVSLRKCVICLSGH 239
R WDV ++ + L+ H
Sbjct: 314 KLRFWDVKTKERITTLNMH 332
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 90 AVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PM 143
AV ++ + AT+ T AV SV +SP G+QLA G + TV + Q P
Sbjct: 175 AVLQVTETVKVCATLPS-TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPP 233
Query: 144 FKCTGHKNWVLCIAW 158
F + H VL + W
Sbjct: 234 FYESDHPVRVLDVLW 248
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L + S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 309 ARLLTTDQKSEIRVY 323
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L + S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 265 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 323
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 443 LLLSGSKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498
L + S D T+K+WD+R + K LP H V A +SPDG ++ + + ++++
Sbjct: 266 FLATASVDQTVKIWDLRQVRGKASFLYSLP-HRHPVNAACFSPDGARLLTTDQKSEIRVY 324
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSADG 162
H + V VA +P LA+ S D TV++WDL + H++ V +S DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 163 KHLVSGSKAGELQCW 177
L++ + E++ +
Sbjct: 310 ARLLTTDQKSEIRVY 324
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333
I ELK H ++S+ + + + H G + EE +E + K+ N +RLV
Sbjct: 140 IMELKYHADLLDSMGIEGKIQI------HVGSSMNGKEESLNRFIENFRKLPSNISKRLV 193
Query: 334 SGSDD 338
+DD
Sbjct: 194 IENDD 198
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 212 RFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKW--GGDGVIYTGSQDCTIKV 265
++ + G +IWD + ++ L+G + + CV V+ TG QD + +
Sbjct: 204 EILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 266 WETTQGKL-IRELKGH 280
W+ QG + + LK H
Sbjct: 264 WDVRQGTMPVSLLKAH 279
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 453 LKVWDIRTQKLKQD----LPGHADEVFAVDWSPDGEKV-ASGGKDRVLKLW 498
LK+WD R Q + L G + VD P+ + V A+GG+D +L +W
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIW 264
>pdb|4BAA|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
pdb|4BAA|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A Beta-
Phenylalanine Ammonia Lyase
Length = 705
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
>pdb|2YII|A Chain A, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|B Chain B, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|C Chain C, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|2YII|D Chain D, Manipulating The Regioselectivity Of Phenylalanine
Aminomutase: New Insights Into The Reaction Mechanism Of
Mio-dependent Enzymes From Structure-guided Directed
Evolution
pdb|4BAB|A Chain A, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|B Chain B, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|C Chain C, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
pdb|4BAB|D Chain D, Redesign Of A Phenylalanine Aminomutase Into A
Beta-phenylalanine Ammonia Lyase
Length = 705
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321
LI ++K H + S L E+ LR+ F ++Y S +++KK +RY
Sbjct: 293 LIHKVKPHPGQIESAEL-LEWLLRSSPFQELSREYYSIDKLKKPKQDRY 340
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,182,755
Number of Sequences: 62578
Number of extensions: 770413
Number of successful extensions: 3892
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1675
Number of HSP's gapped (non-prelim): 819
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)