Query 010816
Match_columns 500
No_of_seqs 375 out of 3458
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 04:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.4E-99 3E-104 654.1 40.5 466 7-499 10-479 (480)
2 KOG0313 Microtubule binding pr 100.0 7.3E-55 1.6E-59 376.9 35.1 373 6-500 3-417 (423)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.7E-50 3.7E-55 354.5 24.8 282 106-499 173-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 6E-50 1.3E-54 346.6 26.8 287 143-500 108-438 (480)
5 KOG0286 G-protein beta subunit 100.0 2.5E-47 5.5E-52 319.4 35.0 295 102-499 49-343 (343)
6 KOG0319 WD40-repeat-containing 100.0 4.9E-44 1.1E-48 334.4 33.1 374 98-499 94-617 (775)
7 KOG0318 WD40 repeat stress pro 100.0 2.6E-42 5.7E-47 310.9 37.6 388 78-500 147-601 (603)
8 KOG0272 U4/U6 small nuclear ri 100.0 1E-44 2.3E-49 318.2 19.6 253 93-457 200-458 (459)
9 KOG0295 WD40 repeat-containing 100.0 1.3E-43 2.8E-48 305.7 25.8 306 98-499 98-404 (406)
10 KOG0296 Angio-associated migra 100.0 2.5E-42 5.5E-47 297.9 30.2 329 100-499 56-396 (399)
11 KOG0273 Beta-transducin family 100.0 3.1E-41 6.8E-46 300.1 33.1 322 105-498 175-520 (524)
12 KOG0279 G protein beta subunit 100.0 6.9E-41 1.5E-45 279.1 30.7 285 101-500 8-312 (315)
13 KOG0265 U5 snRNP-specific prot 100.0 2.7E-41 5.8E-46 284.4 28.3 286 103-498 42-335 (338)
14 KOG0319 WD40-repeat-containing 100.0 3.9E-41 8.4E-46 315.1 30.0 364 106-500 60-576 (775)
15 KOG0291 WD40-repeat-containing 100.0 5.3E-40 1.1E-44 307.9 37.0 336 100-499 137-548 (893)
16 KOG0318 WD40 repeat stress pro 100.0 3.3E-39 7.2E-44 291.0 38.0 371 96-500 135-559 (603)
17 KOG0315 G-protein beta subunit 100.0 6.7E-40 1.5E-44 268.7 30.3 289 121-479 11-308 (311)
18 KOG0285 Pleiotropic regulator 100.0 2.3E-40 4.9E-45 284.9 26.9 287 99-499 142-437 (460)
19 KOG0284 Polyadenylation factor 100.0 9.5E-41 2.1E-45 292.0 18.4 280 108-499 96-378 (464)
20 KOG0263 Transcription initiati 100.0 9.5E-40 2.1E-44 308.9 25.2 275 145-500 373-648 (707)
21 KOG0281 Beta-TrCP (transducin 100.0 1.3E-40 2.9E-45 285.3 16.0 268 107-499 196-475 (499)
22 KOG0315 G-protein beta subunit 100.0 1.3E-38 2.9E-43 261.1 26.1 266 163-499 11-286 (311)
23 KOG0645 WD40 repeat protein [G 100.0 1.5E-37 3.2E-42 258.2 31.3 283 102-499 8-309 (312)
24 KOG0266 WD40 repeat-containing 100.0 8.4E-38 1.8E-42 304.1 33.9 291 103-499 153-452 (456)
25 KOG0282 mRNA splicing factor [ 100.0 6.8E-40 1.5E-44 292.8 17.0 294 96-499 202-503 (503)
26 KOG0273 Beta-transducin family 100.0 7.9E-38 1.7E-42 278.5 29.5 288 108-459 235-523 (524)
27 KOG0293 WD40 repeat-containing 100.0 1.4E-38 3.1E-43 278.7 23.8 289 101-499 217-511 (519)
28 KOG0279 G protein beta subunit 100.0 1.1E-37 2.4E-42 260.0 24.9 259 99-459 54-313 (315)
29 cd00200 WD40 WD40 domain, foun 100.0 2.7E-36 5.9E-41 279.4 37.2 286 102-499 3-289 (289)
30 KOG0316 Conserved WD40 repeat- 100.0 4E-37 8.6E-42 250.5 25.2 284 102-499 11-297 (307)
31 KOG0306 WD40-repeat-containing 100.0 1.6E-36 3.5E-41 284.5 32.4 352 83-500 81-621 (888)
32 KOG0263 Transcription initiati 100.0 8.5E-38 1.8E-42 295.7 23.4 278 102-460 372-650 (707)
33 KOG0291 WD40-repeat-containing 100.0 3.4E-35 7.3E-40 275.8 37.1 322 108-500 265-611 (893)
34 PLN00181 protein SPA1-RELATED; 100.0 4E-35 8.6E-40 306.7 40.9 303 129-499 457-791 (793)
35 KOG0286 G-protein beta subunit 100.0 4.5E-36 9.9E-41 251.9 26.9 244 104-457 93-343 (343)
36 KOG0292 Vesicle coat complex C 100.0 1.2E-35 2.7E-40 283.0 26.4 306 107-495 8-316 (1202)
37 KOG0306 WD40-repeat-containing 100.0 5.6E-34 1.2E-38 267.5 34.0 333 107-499 64-578 (888)
38 KOG0276 Vesicle coat complex C 100.0 1.2E-34 2.6E-39 266.6 27.8 284 103-497 8-295 (794)
39 PLN00181 protein SPA1-RELATED; 100.0 1.6E-33 3.4E-38 294.7 39.6 297 103-458 478-792 (793)
40 KOG0295 WD40 repeat-containing 100.0 2.3E-35 5E-40 254.8 20.9 265 98-458 140-405 (406)
41 KOG0276 Vesicle coat complex C 100.0 1.1E-33 2.4E-38 260.3 31.0 347 104-498 51-414 (794)
42 KOG0284 Polyadenylation factor 100.0 7.6E-36 1.6E-40 261.4 14.9 246 103-389 133-379 (464)
43 KOG0281 Beta-TrCP (transducin 100.0 1.2E-35 2.6E-40 254.9 13.3 228 193-499 197-426 (499)
44 KOG0274 Cdc4 and related F-box 100.0 4.3E-33 9.4E-38 269.8 30.5 284 107-469 207-492 (537)
45 KOG0275 Conserved WD40 repeat- 100.0 8.7E-35 1.9E-39 247.5 16.2 283 106-457 211-507 (508)
46 KOG0277 Peroxisomal targeting 100.0 2.3E-33 5E-38 231.1 23.6 280 112-457 12-307 (311)
47 KOG0296 Angio-associated migra 100.0 1.5E-32 3.3E-37 237.5 29.0 315 76-459 62-398 (399)
48 KOG0278 Serine/threonine kinas 100.0 4.3E-34 9.3E-39 234.8 18.1 287 103-463 9-301 (334)
49 KOG0643 Translation initiation 100.0 7.8E-33 1.7E-37 229.6 22.8 283 103-498 5-314 (327)
50 KOG0300 WD40 repeat-containing 100.0 8.4E-33 1.8E-37 234.8 23.2 321 99-499 139-474 (481)
51 KOG0285 Pleiotropic regulator 100.0 1E-32 2.2E-37 237.8 21.9 242 187-499 145-387 (460)
52 KOG0274 Cdc4 and related F-box 100.0 7.2E-32 1.6E-36 261.3 28.9 273 149-500 207-481 (537)
53 KOG0266 WD40 repeat-containing 100.0 1.2E-31 2.6E-36 261.0 30.6 240 149-499 158-407 (456)
54 KOG1407 WD40 repeat protein [F 100.0 2.1E-31 4.6E-36 220.4 26.8 277 145-492 15-293 (313)
55 KOG0265 U5 snRNP-specific prot 100.0 3.3E-32 7.1E-37 229.7 22.2 246 142-499 39-294 (338)
56 KOG0288 WD40 repeat protein Ti 100.0 6.9E-33 1.5E-37 243.3 18.0 291 98-499 165-459 (459)
57 KOG0278 Serine/threonine kinas 100.0 1.1E-32 2.3E-37 226.6 16.1 282 144-499 8-295 (334)
58 KOG0316 Conserved WD40 repeat- 100.0 2.7E-31 5.8E-36 216.5 23.6 243 143-499 10-255 (307)
59 KOG1446 Histone H3 (Lys4) meth 100.0 5.7E-30 1.2E-34 218.3 32.6 285 107-499 13-301 (311)
60 KOG0277 Peroxisomal targeting 100.0 4.2E-32 9.2E-37 223.7 18.6 242 108-389 60-308 (311)
61 KOG0313 Microtubule binding pr 100.0 1.2E-30 2.7E-35 226.8 27.1 276 69-389 106-417 (423)
62 KOG0645 WD40 repeat protein [G 100.0 6.8E-30 1.5E-34 212.7 29.7 242 143-499 7-259 (312)
63 KOG0268 Sof1-like rRNA process 100.0 4E-32 8.6E-37 234.7 16.7 285 102-462 60-348 (433)
64 KOG2106 Uncharacterized conser 100.0 5.7E-29 1.2E-33 223.9 37.2 391 100-499 96-519 (626)
65 KOG0292 Vesicle coat complex C 100.0 2.6E-30 5.5E-35 247.0 30.1 310 98-493 41-388 (1202)
66 KOG0301 Phospholipase A2-activ 100.0 9.9E-31 2.1E-35 243.9 26.6 278 143-499 7-286 (745)
67 KOG0640 mRNA cleavage stimulat 100.0 9.1E-31 2E-35 221.8 23.7 298 97-499 101-424 (430)
68 KOG0641 WD40 repeat protein [G 100.0 3E-29 6.5E-34 203.4 31.1 293 107-499 31-347 (350)
69 KOG0283 WD40 repeat-containing 100.0 6E-31 1.3E-35 251.6 23.7 254 102-459 260-576 (712)
70 KOG0973 Histone transcription 100.0 6.3E-30 1.4E-34 250.8 29.8 314 107-499 12-353 (942)
71 KOG0305 Anaphase promoting com 100.0 1.1E-29 2.3E-34 237.0 28.8 270 114-499 183-459 (484)
72 KOG0310 Conserved WD40 repeat- 100.0 8.4E-30 1.8E-34 228.8 26.9 281 108-460 26-310 (487)
73 KOG0283 WD40 repeat-containing 100.0 4E-30 8.6E-35 246.0 26.3 288 146-499 262-574 (712)
74 KOG0772 Uncharacterized conser 100.0 2.7E-30 5.8E-35 233.0 22.7 294 100-498 159-484 (641)
75 KOG1332 Vesicle coat complex C 100.0 1.9E-30 4.2E-35 212.8 18.5 252 104-390 7-286 (299)
76 KOG1063 RNA polymerase II elon 100.0 2.6E-29 5.6E-34 234.4 28.3 366 101-499 184-646 (764)
77 KOG0275 Conserved WD40 repeat- 100.0 1E-30 2.2E-35 222.9 16.8 286 148-499 211-507 (508)
78 PTZ00421 coronin; Provisional 100.0 3.5E-28 7.5E-33 235.7 35.7 253 107-399 19-299 (493)
79 cd00200 WD40 WD40 domain, foun 100.0 1.4E-28 3.1E-33 227.6 31.3 243 145-499 4-247 (289)
80 KOG0301 Phospholipase A2-activ 100.0 4.4E-29 9.4E-34 233.0 27.0 279 100-459 6-288 (745)
81 KOG0299 U3 snoRNP-associated p 100.0 6.2E-29 1.4E-33 221.5 26.2 287 102-457 136-454 (479)
82 KOG0268 Sof1-like rRNA process 100.0 3.7E-30 7.9E-35 222.6 17.0 279 144-500 60-344 (433)
83 KOG0282 mRNA splicing factor [ 100.0 7.6E-30 1.6E-34 228.7 18.8 255 93-457 243-503 (503)
84 PTZ00420 coronin; Provisional 100.0 1.3E-27 2.8E-32 232.6 35.1 251 126-483 50-318 (568)
85 KOG1407 WD40 repeat protein [F 100.0 1.1E-27 2.5E-32 198.4 26.7 276 102-450 14-293 (313)
86 KOG0310 Conserved WD40 repeat- 100.0 2.5E-28 5.5E-33 219.3 24.7 291 132-497 11-305 (487)
87 KOG0647 mRNA export protein (c 100.0 5.7E-28 1.2E-32 204.3 24.5 258 108-408 27-299 (347)
88 KOG1408 WD40 repeat protein [F 100.0 1.5E-27 3.3E-32 223.2 29.6 323 111-500 327-712 (1080)
89 KOG0647 mRNA export protein (c 100.0 1.6E-27 3.5E-32 201.6 26.8 273 148-489 25-311 (347)
90 KOG1539 WD repeat protein [Gen 100.0 9E-27 2E-31 221.8 33.5 395 98-499 192-646 (910)
91 KOG1539 WD repeat protein [Gen 100.0 1E-26 2.2E-31 221.5 33.6 384 111-500 162-605 (910)
92 KOG0289 mRNA splicing factor [ 100.0 2.8E-27 6E-32 209.4 27.4 282 108-458 219-505 (506)
93 KOG0299 U3 snoRNP-associated p 100.0 1E-27 2.2E-32 213.8 24.9 292 144-496 136-451 (479)
94 KOG2096 WD40 repeat protein [G 100.0 4E-27 8.6E-32 200.5 26.7 303 101-498 79-399 (420)
95 KOG0305 Anaphase promoting com 100.0 2.1E-27 4.5E-32 221.8 26.9 242 107-392 216-463 (484)
96 KOG0293 WD40 repeat-containing 100.0 3E-28 6.5E-33 214.1 19.6 249 100-390 261-513 (519)
97 KOG1036 Mitotic spindle checkp 100.0 1.2E-26 2.7E-31 197.1 28.3 278 108-491 13-294 (323)
98 KOG0288 WD40 repeat protein Ti 100.0 3.5E-28 7.5E-33 213.8 19.2 245 100-456 211-458 (459)
99 KOG0289 mRNA splicing factor [ 100.0 7.3E-27 1.6E-31 206.7 27.1 279 151-499 220-504 (506)
100 KOG4283 Transcription-coupled 100.0 5.1E-27 1.1E-31 197.8 23.5 301 105-499 40-363 (397)
101 PTZ00420 coronin; Provisional 100.0 6.5E-26 1.4E-30 220.7 34.9 225 216-499 50-291 (568)
102 KOG0264 Nucleosome remodeling 100.0 1.5E-27 3.3E-32 212.8 21.1 244 190-499 121-402 (422)
103 KOG0643 Translation initiation 100.0 2.7E-26 5.8E-31 190.9 25.3 246 101-390 45-317 (327)
104 PTZ00421 coronin; Provisional 100.0 5.5E-26 1.2E-30 220.4 31.7 265 151-482 21-314 (493)
105 KOG0308 Conserved WD40 repeat- 100.0 1.1E-27 2.3E-32 222.1 18.5 271 160-499 35-325 (735)
106 KOG0308 Conserved WD40 repeat- 100.0 5.5E-27 1.2E-31 217.5 22.5 239 113-392 29-287 (735)
107 KOG0650 WD40 repeat nucleolar 100.0 7.8E-27 1.7E-31 214.4 22.6 298 98-499 390-733 (733)
108 KOG2445 Nuclear pore complex c 99.9 1.8E-25 3.8E-30 189.8 25.7 261 105-499 10-316 (361)
109 KOG0300 WD40 repeat-containing 99.9 1.4E-26 3.1E-31 197.0 19.2 252 97-391 179-477 (481)
110 KOG1332 Vesicle coat complex C 99.9 1.1E-26 2.3E-31 190.9 16.7 244 147-499 8-284 (299)
111 KOG0269 WD40 repeat-containing 99.9 1.7E-26 3.6E-31 218.4 18.8 277 153-496 42-335 (839)
112 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-24 3.2E-29 185.4 28.8 241 146-500 10-261 (311)
113 KOG0264 Nucleosome remodeling 99.9 4.7E-26 1E-30 203.3 20.2 246 106-390 122-404 (422)
114 KOG0639 Transducin-like enhanc 99.9 6.6E-26 1.4E-30 204.1 21.1 280 105-499 416-702 (705)
115 KOG0973 Histone transcription 99.9 1.3E-25 2.8E-30 220.7 24.8 268 100-392 61-357 (942)
116 KOG0294 WD40 repeat-containing 99.9 4.7E-25 1E-29 187.8 24.6 241 103-392 38-283 (362)
117 KOG0640 mRNA cleavage stimulat 99.9 3.5E-26 7.6E-31 194.1 17.6 254 100-389 164-425 (430)
118 KOG1408 WD40 repeat protein [F 99.9 2E-25 4.3E-30 209.1 24.1 289 105-460 366-714 (1080)
119 KOG0646 WD40 repeat protein [G 99.9 1.1E-25 2.4E-30 201.3 20.1 228 108-411 81-328 (476)
120 KOG2106 Uncharacterized conser 99.9 1.1E-23 2.5E-28 190.0 31.9 334 109-499 247-624 (626)
121 KOG0294 WD40 repeat-containing 99.9 2.7E-24 5.9E-29 183.2 26.0 237 189-500 39-280 (362)
122 KOG2048 WD40 repeat protein [G 99.9 2.7E-23 5.8E-28 194.2 34.8 245 102-390 62-319 (691)
123 KOG0641 WD40 repeat protein [G 99.9 1.4E-23 3.1E-28 170.6 27.7 243 104-390 85-349 (350)
124 KOG0267 Microtubule severing p 99.9 8.3E-27 1.8E-31 218.7 10.3 255 163-493 5-260 (825)
125 KOG1063 RNA polymerase II elon 99.9 1.6E-23 3.4E-28 196.1 31.9 365 102-499 261-697 (764)
126 KOG4328 WD40 protein [Function 99.9 7.7E-25 1.7E-29 195.4 21.8 304 135-499 171-493 (498)
127 KOG0321 WD40 repeat-containing 99.9 1.6E-24 3.6E-29 200.7 22.7 288 112-499 53-389 (720)
128 KOG0772 Uncharacterized conser 99.9 1.4E-24 2.9E-29 196.4 20.8 242 144-491 161-429 (641)
129 KOG1274 WD40 repeat protein [G 99.9 2.5E-23 5.4E-28 200.8 30.3 286 105-498 10-297 (933)
130 KOG1445 Tumor-specific antigen 99.9 1E-23 2.2E-28 195.2 25.4 138 336-499 600-748 (1012)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.7E-22 5.8E-27 187.5 35.2 285 121-481 2-300 (300)
132 KOG0646 WD40 repeat protein [G 99.9 9.8E-24 2.1E-28 188.9 23.9 287 125-482 12-330 (476)
133 KOG0267 Microtubule severing p 99.9 1.1E-25 2.4E-30 211.3 10.6 221 103-408 23-244 (825)
134 KOG2055 WD40 repeat protein [G 99.9 6.6E-23 1.4E-27 183.3 26.9 287 108-499 213-510 (514)
135 KOG2048 WD40 repeat protein [G 99.9 5E-22 1.1E-26 185.8 33.1 391 104-499 106-546 (691)
136 KOG0269 WD40 repeat-containing 99.9 1.3E-24 2.9E-29 205.6 15.6 238 112-389 91-339 (839)
137 KOG1274 WD40 repeat protein [G 99.9 9.4E-23 2E-27 196.8 26.6 248 148-500 11-261 (933)
138 KOG1273 WD40 repeat protein [G 99.9 1.4E-22 3E-27 172.8 24.2 279 111-459 26-322 (405)
139 KOG0302 Ribosome Assembly prot 99.9 6.1E-23 1.3E-27 179.0 21.4 243 104-387 147-435 (440)
140 KOG4378 Nuclear protein COP1 [ 99.9 1.5E-22 3.3E-27 182.4 21.8 284 128-482 10-304 (673)
141 KOG1009 Chromatin assembly com 99.9 7.5E-22 1.6E-26 174.0 24.6 318 108-496 13-367 (434)
142 KOG1034 Transcriptional repres 99.9 4.9E-22 1.1E-26 170.4 20.7 313 104-499 34-381 (385)
143 KOG0270 WD40 repeat-containing 99.9 1E-21 2.2E-26 175.0 23.5 286 113-464 130-454 (463)
144 KOG0321 WD40 repeat-containing 99.9 3.8E-22 8.2E-27 185.2 21.3 359 103-499 95-529 (720)
145 COG2319 FOG: WD40 repeat [Gene 99.9 1.6E-19 3.6E-24 177.2 41.2 326 103-499 60-398 (466)
146 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-20 2.6E-25 176.4 31.4 270 163-500 2-278 (300)
147 KOG0270 WD40 repeat-containing 99.9 3.3E-22 7.1E-27 178.1 18.7 233 120-394 192-453 (463)
148 KOG4283 Transcription-coupled 99.9 3.7E-21 7.9E-26 162.7 22.9 255 148-500 41-333 (397)
149 KOG4328 WD40 protein [Function 99.9 5E-21 1.1E-25 171.2 24.5 288 104-459 182-495 (498)
150 KOG0302 Ribosome Assembly prot 99.9 1.6E-21 3.4E-26 170.3 20.1 243 190-498 148-435 (440)
151 KOG1036 Mitotic spindle checkp 99.9 2.2E-20 4.8E-25 159.2 24.9 237 105-449 51-294 (323)
152 KOG0307 Vesicle coat complex C 99.9 4.7E-22 1E-26 196.7 15.4 248 109-462 65-330 (1049)
153 KOG2096 WD40 repeat protein [G 99.9 7.8E-21 1.7E-25 162.4 19.6 216 145-499 81-306 (420)
154 KOG0322 G-protein beta subunit 99.9 1.7E-21 3.7E-26 162.2 15.1 287 103-458 9-322 (323)
155 KOG2919 Guanine nucleotide-bin 99.9 5.4E-20 1.2E-24 157.7 23.4 279 153-492 52-361 (406)
156 COG2319 FOG: WD40 repeat [Gene 99.9 4.8E-18 1.1E-22 166.8 41.2 327 102-499 102-440 (466)
157 KOG1273 WD40 repeat protein [G 99.9 5E-20 1.1E-24 157.3 22.0 290 153-499 26-320 (405)
158 KOG1007 WD repeat protein TSSC 99.9 5.3E-20 1.1E-24 155.3 20.7 250 101-390 56-361 (370)
159 KOG0307 Vesicle coat complex C 99.9 7.3E-21 1.6E-25 188.4 14.5 278 113-499 11-325 (1049)
160 KOG0639 Transducin-like enhanc 99.8 3.1E-20 6.7E-25 167.9 16.0 193 241-499 466-661 (705)
161 KOG1538 Uncharacterized conser 99.8 2.1E-19 4.5E-24 167.9 21.6 272 110-499 14-291 (1081)
162 KOG0649 WD40 repeat protein [G 99.8 2.6E-18 5.6E-23 141.7 25.4 278 109-498 11-313 (325)
163 KOG0644 Uncharacterized conser 99.8 6.6E-21 1.4E-25 182.0 11.7 276 101-498 183-465 (1113)
164 KOG0642 Cell-cycle nuclear pro 99.8 1.7E-20 3.8E-25 172.1 13.9 266 102-471 288-573 (577)
165 KOG1334 WD40 repeat protein [G 99.8 7.4E-20 1.6E-24 165.0 17.1 292 144-499 136-464 (559)
166 KOG1445 Tumor-specific antigen 99.8 1.5E-18 3.3E-23 161.3 24.7 138 329-493 640-786 (1012)
167 KOG0322 G-protein beta subunit 99.8 1.9E-19 4.1E-24 150.1 15.9 305 141-499 5-321 (323)
168 KOG4227 WD40 repeat protein [G 99.8 1.2E-18 2.5E-23 153.2 21.1 302 98-499 46-385 (609)
169 KOG4378 Nuclear protein COP1 [ 99.8 4.7E-19 1E-23 160.1 16.8 221 111-372 82-305 (673)
170 KOG1188 WD40 repeat protein [G 99.8 6.4E-19 1.4E-23 152.3 16.8 282 121-499 41-344 (376)
171 KOG1034 Transcriptional repres 99.8 7.1E-19 1.5E-23 151.2 16.3 253 106-389 87-382 (385)
172 KOG0290 Conserved WD40 repeat- 99.8 1E-17 2.2E-22 141.8 22.5 241 110-391 46-319 (364)
173 KOG1517 Guanine nucleotide bin 99.8 5.2E-18 1.1E-22 166.4 23.8 295 106-462 1062-1384(1387)
174 KOG1007 WD repeat protein TSSC 99.8 8.3E-18 1.8E-22 142.2 21.4 289 128-497 38-357 (370)
175 KOG2919 Guanine nucleotide-bin 99.8 1.7E-17 3.8E-22 142.4 21.7 257 111-409 52-347 (406)
176 KOG2445 Nuclear pore complex c 99.8 2.4E-17 5.2E-22 140.6 21.1 229 100-390 51-318 (361)
177 KOG0642 Cell-cycle nuclear pro 99.8 4.3E-18 9.3E-23 156.6 16.9 227 235-499 289-559 (577)
178 KOG0650 WD40 repeat nucleolar 99.8 1.2E-17 2.6E-22 154.5 19.6 274 144-500 394-679 (733)
179 KOG1188 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 144.6 18.2 271 92-390 52-346 (376)
180 KOG1587 Cytoplasmic dynein int 99.8 1.2E-16 2.5E-21 154.5 26.9 265 130-459 222-516 (555)
181 KOG0303 Actin-binding protein 99.8 2.7E-17 5.9E-22 144.9 19.2 162 102-270 75-250 (472)
182 KOG0303 Actin-binding protein 99.8 1.2E-16 2.5E-21 140.9 21.6 201 235-499 76-292 (472)
183 KOG1538 Uncharacterized conser 99.8 3.4E-16 7.4E-21 146.7 25.7 241 99-389 44-292 (1081)
184 KOG1009 Chromatin assembly com 99.8 7.2E-17 1.5E-21 142.8 20.1 125 102-232 59-199 (434)
185 KOG1524 WD40 repeat-containing 99.8 5.8E-17 1.2E-21 148.2 18.8 266 148-497 12-282 (737)
186 KOG2055 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 143.4 20.0 249 107-459 256-512 (514)
187 KOG1334 WD40 repeat protein [G 99.7 4.5E-17 9.7E-22 147.3 14.5 291 102-459 136-466 (559)
188 KOG0771 Prolactin regulatory e 99.7 1.8E-16 3.8E-21 141.3 18.0 201 112-460 148-355 (398)
189 KOG1587 Cytoplasmic dynein int 99.7 7.3E-16 1.6E-20 149.0 23.7 244 108-391 242-517 (555)
190 KOG1517 Guanine nucleotide bin 99.7 6.7E-16 1.5E-20 151.9 23.2 286 151-499 1065-1379(1387)
191 KOG1310 WD40 repeat protein [G 99.7 7.3E-17 1.6E-21 147.9 15.1 165 101-269 43-231 (758)
192 KOG1963 WD40 repeat protein [G 99.7 4.3E-15 9.4E-20 144.1 27.1 293 105-499 202-536 (792)
193 KOG0290 Conserved WD40 repeat- 99.7 3E-15 6.6E-20 127.0 22.5 276 152-492 46-357 (364)
194 PRK11028 6-phosphogluconolacto 99.7 1.5E-14 3.2E-19 136.7 29.8 275 124-499 6-302 (330)
195 KOG4497 Uncharacterized conser 99.7 5.5E-15 1.2E-19 127.5 23.9 329 156-499 14-389 (447)
196 KOG1240 Protein kinase contain 99.7 8.1E-15 1.7E-19 146.6 25.6 321 95-499 1035-1431(1431)
197 PRK01742 tolB translocation pr 99.7 1.9E-15 4.1E-20 147.2 20.7 233 129-482 183-426 (429)
198 KOG1524 WD40 repeat-containing 99.7 5.5E-15 1.2E-19 135.4 20.8 260 106-455 12-282 (737)
199 KOG1963 WD40 repeat protein [G 99.7 6.1E-14 1.3E-18 136.2 29.1 318 114-499 22-373 (792)
200 KOG0644 Uncharacterized conser 99.7 6.6E-17 1.4E-21 155.0 8.3 235 188-499 185-424 (1113)
201 KOG2394 WD40 protein DMR-N9 [G 99.7 5.1E-15 1.1E-19 135.7 19.0 192 211-480 186-383 (636)
202 KOG1310 WD40 repeat protein [G 99.7 1.3E-15 2.9E-20 139.8 15.0 125 144-271 44-180 (758)
203 KOG2110 Uncharacterized conser 99.7 1E-13 2.2E-18 121.7 24.4 224 207-499 14-246 (391)
204 KOG1523 Actin-related protein 99.6 3.2E-14 6.9E-19 122.5 18.1 232 108-381 10-269 (361)
205 KOG0649 WD40 repeat protein [G 99.6 1.9E-13 4.1E-18 113.3 21.6 237 152-498 12-271 (325)
206 KOG2110 Uncharacterized conser 99.6 8.5E-13 1.8E-17 116.1 26.3 237 108-460 5-249 (391)
207 KOG1523 Actin-related protein 99.6 1.8E-13 3.8E-18 118.0 21.0 250 149-492 9-269 (361)
208 KOG0771 Prolactin regulatory e 99.6 2E-13 4.3E-18 122.1 21.5 196 244-498 148-351 (398)
209 KOG2111 Uncharacterized conser 99.6 5.3E-12 1.1E-16 109.0 29.3 236 152-460 7-257 (346)
210 PRK01742 tolB translocation pr 99.6 1.2E-13 2.6E-18 134.6 20.6 208 219-499 183-399 (429)
211 KOG3881 Uncharacterized conser 99.6 5.3E-13 1.2E-17 118.1 22.1 262 151-482 56-342 (412)
212 KOG1272 WD40-repeat-containing 99.6 7E-15 1.5E-19 132.5 10.0 267 150-493 129-401 (545)
213 PRK11028 6-phosphogluconolacto 99.6 5.1E-12 1.1E-16 119.4 29.9 156 109-270 35-206 (330)
214 KOG4227 WD40 repeat protein [G 99.6 3.5E-13 7.5E-18 119.1 18.9 243 106-389 103-386 (609)
215 KOG1354 Serine/threonine prote 99.6 5.9E-13 1.3E-17 115.9 19.7 334 108-499 25-432 (433)
216 KOG0974 WD-repeat protein WDR6 99.5 1.5E-12 3.2E-17 129.0 21.4 276 150-499 7-286 (967)
217 PF02239 Cytochrom_D1: Cytochr 99.5 7.8E-11 1.7E-15 111.2 29.6 295 112-468 40-356 (369)
218 PF02239 Cytochrom_D1: Cytochr 99.5 2.9E-10 6.2E-15 107.4 33.4 292 124-499 10-345 (369)
219 PRK03629 tolB translocation pr 99.5 2.7E-11 5.8E-16 117.9 27.2 233 130-481 179-427 (429)
220 PRK02889 tolB translocation pr 99.5 1.1E-11 2.3E-16 120.8 23.3 236 130-482 176-425 (427)
221 KOG2321 WD40 repeat protein [G 99.5 1.8E-11 3.9E-16 113.7 23.1 285 106-498 49-340 (703)
222 KOG3881 Uncharacterized conser 99.5 8.7E-12 1.9E-16 110.6 19.5 245 108-395 55-325 (412)
223 PF08662 eIF2A: Eukaryotic tra 99.5 4.1E-12 8.9E-17 108.8 17.0 108 360-499 59-177 (194)
224 PRK04922 tolB translocation pr 99.5 1.2E-11 2.7E-16 120.8 22.7 233 130-481 184-432 (433)
225 KOG2394 WD40 protein DMR-N9 [G 99.5 1.6E-11 3.4E-16 113.2 21.2 242 111-412 126-384 (636)
226 KOG2139 WD40 repeat protein [G 99.5 3.6E-11 7.8E-16 105.6 22.4 198 110-380 100-300 (445)
227 KOG2315 Predicted translation 99.4 8.1E-10 1.8E-14 102.8 31.8 312 109-499 35-388 (566)
228 TIGR03300 assembly_YfgL outer 99.4 3E-10 6.6E-15 109.5 30.1 307 119-498 64-376 (377)
229 PRK05137 tolB translocation pr 99.4 1.2E-10 2.5E-15 114.2 27.5 232 130-481 182-432 (435)
230 KOG2139 WD40 repeat protein [G 99.4 1.5E-11 3.2E-16 108.0 18.0 202 194-495 99-305 (445)
231 KOG2111 Uncharacterized conser 99.4 1E-10 2.2E-15 101.2 22.3 224 208-499 15-254 (346)
232 PRK03629 tolB translocation pr 99.4 1.1E-10 2.5E-15 113.5 25.5 161 102-271 192-365 (429)
233 KOG1240 Protein kinase contain 99.4 8.4E-11 1.8E-15 118.5 24.5 145 331-499 1165-1332(1431)
234 KOG1272 WD40-repeat-containing 99.4 1.7E-12 3.6E-17 117.4 9.6 223 207-499 138-360 (545)
235 PRK02889 tolB translocation pr 99.4 9.2E-11 2E-15 114.3 22.2 206 220-493 176-392 (427)
236 COG5354 Uncharacterized protei 99.4 8.2E-10 1.8E-14 101.6 26.6 304 109-493 72-421 (561)
237 PRK05137 tolB translocation pr 99.4 4.2E-10 9E-15 110.3 25.8 203 220-492 182-397 (435)
238 PF08662 eIF2A: Eukaryotic tra 99.3 2.1E-10 4.5E-15 98.3 19.9 152 113-276 10-185 (194)
239 KOG4497 Uncharacterized conser 99.3 2.6E-09 5.6E-14 93.0 23.7 328 109-494 49-425 (447)
240 KOG1409 Uncharacterized conser 99.3 5.7E-10 1.2E-14 97.6 19.5 248 100-392 16-272 (404)
241 KOG4547 WD40 repeat-containing 99.3 3.5E-10 7.6E-15 106.0 19.2 202 253-499 7-218 (541)
242 KOG1064 RAVE (regulator of V-A 99.3 3.9E-11 8.4E-16 125.0 13.7 246 127-494 2187-2439(2439)
243 PRK04922 tolB translocation pr 99.3 9.7E-10 2.1E-14 107.5 22.7 203 220-492 184-399 (433)
244 KOG2314 Translation initiation 99.3 7E-09 1.5E-13 96.5 26.1 319 112-494 214-560 (698)
245 KOG1354 Serine/threonine prote 99.3 5.7E-10 1.2E-14 97.6 17.4 283 150-499 25-357 (433)
246 KOG4547 WD40 repeat-containing 99.3 2.5E-09 5.5E-14 100.3 22.9 171 160-411 3-193 (541)
247 KOG0974 WD-repeat protein WDR6 99.2 2.9E-10 6.4E-15 113.1 16.8 196 108-347 87-288 (967)
248 COG5354 Uncharacterized protei 99.2 1.7E-08 3.7E-13 93.1 26.8 322 107-500 31-394 (561)
249 PF08154 NLE: NLE (NUC135) dom 99.2 4.9E-11 1.1E-15 80.8 7.6 62 10-71 1-65 (65)
250 KOG2315 Predicted translation 99.2 8.4E-09 1.8E-13 96.2 23.6 295 110-482 75-411 (566)
251 KOG4190 Uncharacterized conser 99.2 9.1E-11 2E-15 108.7 10.1 214 103-463 730-952 (1034)
252 TIGR02800 propeller_TolB tol-p 99.2 1.4E-08 3E-13 99.5 25.2 232 130-480 170-417 (417)
253 TIGR03300 assembly_YfgL outer 99.2 3.2E-08 6.9E-13 95.4 27.2 236 119-403 104-351 (377)
254 PRK04792 tolB translocation pr 99.2 1.6E-08 3.4E-13 99.1 25.0 232 131-481 199-446 (448)
255 TIGR02800 propeller_TolB tol-p 99.2 1.5E-08 3.2E-13 99.4 24.3 204 220-493 170-386 (417)
256 KOG0309 Conserved WD40 repeat- 99.2 4.9E-10 1.1E-14 107.3 13.1 295 108-460 24-340 (1081)
257 PRK00178 tolB translocation pr 99.1 3.4E-08 7.5E-13 97.0 26.5 233 131-482 180-428 (430)
258 KOG0280 Uncharacterized conser 99.1 1.9E-08 4E-13 86.5 20.6 223 213-499 88-331 (339)
259 KOG1064 RAVE (regulator of V-A 99.1 4.2E-10 9.1E-15 117.6 12.8 188 105-349 2205-2400(2439)
260 PRK01029 tolB translocation pr 99.1 4E-08 8.7E-13 95.4 25.2 241 130-483 165-426 (428)
261 PF04762 IKI3: IKI3 family; I 99.1 9.2E-07 2E-11 93.2 36.7 336 107-492 74-507 (928)
262 KOG0309 Conserved WD40 repeat- 99.1 8.9E-10 1.9E-14 105.6 12.6 293 150-499 24-337 (1081)
263 KOG1409 Uncharacterized conser 99.1 1.3E-08 2.9E-13 89.3 18.2 245 143-499 17-268 (404)
264 KOG2041 WD40 repeat protein [G 99.1 9.8E-08 2.1E-12 91.7 24.6 266 109-411 15-317 (1189)
265 PRK00178 tolB translocation pr 99.0 1.9E-07 4.1E-12 91.8 25.8 202 221-492 180-394 (430)
266 KOG0280 Uncharacterized conser 99.0 4.1E-08 9E-13 84.4 18.1 178 110-292 71-264 (339)
267 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.2E-06 6.9E-11 78.4 31.5 269 130-467 27-338 (352)
268 KOG1912 WD40 repeat protein [G 99.0 1.4E-07 3E-12 91.6 22.3 352 100-491 47-486 (1062)
269 KOG4532 WD40-like repeat conta 99.0 8.9E-08 1.9E-12 81.4 18.3 233 197-492 71-323 (344)
270 PRK11138 outer membrane biogen 99.0 1.5E-06 3.3E-11 84.2 29.9 308 120-499 69-392 (394)
271 PRK01029 tolB translocation pr 99.0 2.5E-07 5.4E-12 89.9 23.7 213 221-499 166-401 (428)
272 PRK04792 tolB translocation pr 99.0 3.3E-07 7.2E-12 89.8 24.7 201 221-492 199-413 (448)
273 COG5170 CDC55 Serine/threonine 98.9 5E-08 1.1E-12 84.5 15.6 289 108-498 26-364 (460)
274 KOG2321 WD40 repeat protein [G 98.9 3.6E-08 7.8E-13 92.3 14.8 174 91-269 157-343 (703)
275 KOG3914 WD repeat protein WDR4 98.9 2.8E-08 6.2E-13 89.1 13.2 161 111-278 65-232 (390)
276 PF10282 Lactonase: Lactonase, 98.9 1.7E-05 3.6E-10 75.3 32.3 234 209-499 47-320 (345)
277 COG4946 Uncharacterized protei 98.9 2.8E-05 6E-10 71.8 31.7 134 328-493 331-465 (668)
278 PLN02919 haloacid dehalogenase 98.9 4.1E-06 8.8E-11 90.1 31.2 273 113-463 572-892 (1057)
279 PF15492 Nbas_N: Neuroblastoma 98.9 4.4E-06 9.5E-11 72.4 25.2 246 114-404 3-273 (282)
280 TIGR02658 TTQ_MADH_Hv methylam 98.8 1.8E-05 3.9E-10 73.5 28.4 236 116-398 53-338 (352)
281 PF10282 Lactonase: Lactonase, 98.8 6.8E-05 1.5E-09 71.1 33.4 245 111-396 39-330 (345)
282 PF04762 IKI3: IKI3 family; I 98.8 6.7E-05 1.4E-09 79.4 36.0 271 108-392 120-458 (928)
283 PF00400 WD40: WD domain, G-be 98.8 1.1E-08 2.4E-13 62.4 4.9 37 100-136 3-39 (39)
284 KOG2314 Translation initiation 98.8 4.7E-06 1E-10 78.2 23.5 90 110-204 251-357 (698)
285 PF00400 WD40: WD domain, G-be 98.8 1.5E-08 3.2E-13 61.9 4.6 38 462-499 2-39 (39)
286 PRK11138 outer membrane biogen 98.8 8.5E-06 1.8E-10 79.0 26.1 262 119-458 119-393 (394)
287 PLN02919 haloacid dehalogenase 98.8 8.3E-06 1.8E-10 87.7 28.2 163 330-499 696-886 (1057)
288 KOG4714 Nucleoporin [Nuclear s 98.7 2E-07 4.4E-12 78.9 12.1 116 329-457 192-316 (319)
289 KOG4190 Uncharacterized conser 98.7 4.7E-08 1E-12 91.1 7.8 204 234-499 729-946 (1034)
290 KOG2041 WD40 repeat protein [G 98.7 5.4E-07 1.2E-11 86.8 14.6 252 150-493 14-280 (1189)
291 PRK04043 tolB translocation pr 98.7 1.7E-05 3.7E-10 76.7 25.1 181 242-492 189-388 (419)
292 KOG3914 WD repeat protein WDR4 98.7 1E-07 2.2E-12 85.7 8.9 105 125-236 127-231 (390)
293 KOG1912 WD40 repeat protein [G 98.6 2.3E-06 4.9E-11 83.4 17.8 262 196-499 18-302 (1062)
294 PF13360 PQQ_2: PQQ-like domai 98.6 2.7E-05 5.9E-10 69.8 24.0 225 129-395 2-235 (238)
295 KOG2695 WD40 repeat protein [G 98.6 8.2E-08 1.8E-12 84.5 6.0 129 107-237 251-385 (425)
296 KOG2695 WD40 repeat protein [G 98.6 2.8E-07 6.1E-12 81.2 8.8 127 329-480 264-401 (425)
297 KOG4714 Nucleoporin [Nuclear s 98.6 7.4E-07 1.6E-11 75.6 10.8 158 148-347 87-254 (319)
298 PF08450 SGL: SMP-30/Gluconola 98.6 0.00058 1.2E-08 61.5 31.3 219 211-490 13-244 (246)
299 COG4946 Uncharacterized protei 98.5 0.00015 3.2E-09 67.2 25.4 140 105-252 356-500 (668)
300 COG2706 3-carboxymuconate cycl 98.5 0.00026 5.7E-09 63.6 26.2 265 104-498 35-318 (346)
301 PF13360 PQQ_2: PQQ-like domai 98.5 9.5E-05 2.1E-09 66.3 24.2 220 219-499 2-228 (238)
302 KOG4532 WD40-like repeat conta 98.5 2.1E-05 4.5E-10 67.3 16.7 124 331-483 130-262 (344)
303 KOG1832 HIV-1 Vpr-binding prot 98.4 5.9E-07 1.3E-11 88.6 6.2 80 101-180 1094-1175(1516)
304 COG5170 CDC55 Serine/threonine 98.4 1.4E-05 3.1E-10 69.7 13.7 217 241-500 27-308 (460)
305 KOG2066 Vacuolar assembly/sort 98.3 5E-05 1.1E-09 74.8 18.4 156 108-279 39-197 (846)
306 KOG0882 Cyclophilin-related pe 98.3 1.8E-05 3.9E-10 72.5 14.3 265 149-465 8-311 (558)
307 KOG1275 PAB-dependent poly(A) 98.3 1.5E-05 3.1E-10 79.4 14.5 183 161-388 146-340 (1118)
308 PRK04043 tolB translocation pr 98.3 0.00058 1.3E-08 66.2 25.2 29 366-394 324-361 (419)
309 PF08450 SGL: SMP-30/Gluconola 98.3 0.003 6.4E-08 56.9 28.6 206 155-408 4-230 (246)
310 PF07433 DUF1513: Protein of u 98.2 0.00066 1.4E-08 61.0 22.0 122 102-259 50-181 (305)
311 cd00216 PQQ_DH Dehydrogenases 98.2 0.0046 9.9E-08 61.7 29.6 297 120-468 61-433 (488)
312 PF11768 DUF3312: Protein of u 98.2 3.6E-05 7.8E-10 73.6 13.7 75 106-182 257-331 (545)
313 KOG1645 RING-finger-containing 98.2 0.00026 5.6E-09 64.3 17.7 81 102-183 187-269 (463)
314 KOG1275 PAB-dependent poly(A) 98.2 7.2E-05 1.6E-09 74.7 15.3 179 252-499 148-340 (1118)
315 KOG0882 Cyclophilin-related pe 98.1 2.6E-05 5.6E-10 71.6 11.3 204 211-465 21-237 (558)
316 PF15492 Nbas_N: Neuroblastoma 98.1 0.00052 1.1E-08 59.8 17.9 164 110-279 45-269 (282)
317 KOG1920 IkappaB kinase complex 98.1 0.0024 5.1E-08 66.5 25.1 70 108-178 68-137 (1265)
318 KOG1832 HIV-1 Vpr-binding prot 98.0 7.3E-06 1.6E-10 81.2 5.8 128 231-397 1092-1221(1516)
319 COG2706 3-carboxymuconate cycl 98.0 0.0059 1.3E-07 55.1 23.2 212 219-490 15-262 (346)
320 KOG2066 Vacuolar assembly/sort 98.0 0.00024 5.3E-09 70.2 15.8 142 117-269 80-233 (846)
321 PF08596 Lgl_C: Lethal giant l 97.9 0.0015 3.3E-08 62.4 19.5 275 152-492 3-327 (395)
322 KOG3617 WD40 and TPR repeat-co 97.9 0.00027 5.8E-09 70.2 14.2 70 111-180 62-131 (1416)
323 KOG1645 RING-finger-containing 97.9 0.0005 1.1E-08 62.5 13.9 129 222-388 175-313 (463)
324 KOG2114 Vacuolar assembly/sort 97.9 0.0036 7.8E-08 62.7 20.8 201 209-474 34-259 (933)
325 KOG4640 Anaphase-promoting com 97.8 0.00015 3.3E-09 69.6 9.7 93 110-203 22-115 (665)
326 cd00216 PQQ_DH Dehydrogenases 97.8 0.019 4.1E-07 57.3 24.9 116 162-279 61-193 (488)
327 KOG2114 Vacuolar assembly/sort 97.8 0.0083 1.8E-07 60.3 21.5 223 115-411 30-265 (933)
328 PF11768 DUF3312: Protein of u 97.8 0.00016 3.5E-09 69.3 9.4 74 358-460 257-330 (545)
329 KOG3621 WD40 repeat-containing 97.7 0.00026 5.7E-09 69.0 9.9 112 360-497 33-150 (726)
330 KOG1920 IkappaB kinase complex 97.7 0.0081 1.7E-07 62.7 20.3 108 364-499 199-320 (1265)
331 smart00320 WD40 WD40 repeats. 97.6 0.00021 4.6E-09 42.4 5.6 37 142-178 4-40 (40)
332 smart00320 WD40 WD40 repeats. 97.6 0.00014 3.1E-09 43.2 4.5 36 464-499 5-40 (40)
333 KOG1008 Uncharacterized conser 97.6 4.4E-05 9.5E-10 73.3 2.6 200 150-390 56-275 (783)
334 PF07433 DUF1513: Protein of u 97.5 0.07 1.5E-06 48.3 28.4 61 430-493 217-278 (305)
335 PF08553 VID27: VID27 cytoplas 97.5 0.0042 9.1E-08 63.7 15.7 142 257-458 500-646 (794)
336 KOG1008 Uncharacterized conser 97.4 4.1E-05 8.9E-10 73.5 0.5 160 103-269 97-275 (783)
337 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.14 3E-06 48.8 26.8 67 117-185 1-76 (353)
338 PRK02888 nitrous-oxide reducta 97.3 0.25 5.5E-06 49.3 25.0 136 338-490 295-450 (635)
339 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.27 5.9E-06 49.5 31.5 111 120-236 69-197 (527)
340 PF08596 Lgl_C: Lethal giant l 97.1 0.29 6.4E-06 47.0 24.9 73 110-183 3-118 (395)
341 PF14655 RAB3GAP2_N: Rab3 GTPa 97.1 0.3 6.4E-06 46.9 26.5 49 356-404 303-351 (415)
342 PF04053 Coatomer_WDAD: Coatom 97.0 0.12 2.7E-06 50.2 19.9 112 148-277 30-142 (443)
343 KOG3617 WD40 and TPR repeat-co 97.0 0.0015 3.2E-08 65.2 6.7 105 366-499 21-129 (1416)
344 KOG2444 WD40 repeat protein [G 97.0 0.0017 3.7E-08 54.9 6.2 104 371-499 69-175 (238)
345 PRK02888 nitrous-oxide reducta 97.0 0.12 2.7E-06 51.4 19.0 146 115-271 199-353 (635)
346 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.23 4.9E-06 43.2 29.3 135 121-263 24-159 (354)
347 PF06433 Me-amine-dh_H: Methyl 96.9 0.31 6.8E-06 44.8 25.8 273 130-469 17-330 (342)
348 KOG2444 WD40 repeat protein [G 96.9 0.0047 1E-07 52.3 7.6 105 329-460 70-178 (238)
349 COG0823 TolB Periplasmic compo 96.9 0.088 1.9E-06 51.0 17.3 102 331-462 252-361 (425)
350 PF04053 Coatomer_WDAD: Coatom 96.8 0.53 1.2E-05 45.9 23.0 138 110-268 34-172 (443)
351 PF00930 DPPIV_N: Dipeptidyl p 96.8 0.47 1E-05 45.2 22.1 147 108-273 42-222 (353)
352 PF14583 Pectate_lyase22: Olig 96.8 0.48 1E-05 44.5 30.7 94 136-235 16-117 (386)
353 KOG4640 Anaphase-promoting com 96.7 0.01 2.2E-07 57.6 9.6 94 361-481 21-115 (665)
354 KOG4649 PQQ (pyrrolo-quinoline 96.7 0.35 7.6E-06 42.1 25.1 110 163-281 24-135 (354)
355 KOG2395 Protein involved in va 96.7 0.039 8.3E-07 52.7 12.9 53 440-492 440-492 (644)
356 PF04841 Vps16_N: Vps16, N-ter 96.7 0.68 1.5E-05 45.0 26.4 40 360-399 216-255 (410)
357 PF14783 BBS2_Mid: Ciliary BBS 96.7 0.15 3.3E-06 38.4 13.3 100 363-496 2-109 (111)
358 PF08553 VID27: VID27 cytoplas 96.6 0.047 1E-06 56.3 14.1 133 336-493 501-640 (794)
359 KOG2079 Vacuolar assembly/sort 96.6 0.01 2.2E-07 61.3 8.6 80 331-410 101-180 (1206)
360 PF00780 CNH: CNH domain; Int 96.6 0.6 1.3E-05 42.7 27.7 148 118-274 5-170 (275)
361 PF12894 Apc4_WD40: Anaphase-p 96.4 0.013 2.8E-07 36.6 5.3 32 361-393 12-43 (47)
362 PF14783 BBS2_Mid: Ciliary BBS 96.3 0.31 6.7E-06 36.7 13.4 94 248-385 10-109 (111)
363 PF12894 Apc4_WD40: Anaphase-p 96.2 0.022 4.7E-07 35.6 5.7 31 108-138 11-41 (47)
364 KOG3621 WD40 repeat-containing 96.2 0.064 1.4E-06 53.1 11.3 117 108-229 33-155 (726)
365 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.2 1.4 3E-05 44.4 21.2 117 162-278 69-198 (527)
366 PRK13616 lipoprotein LpqB; Pro 96.0 0.077 1.7E-06 53.8 11.7 103 361-497 350-472 (591)
367 PRK13616 lipoprotein LpqB; Pro 96.0 0.26 5.7E-06 50.0 15.4 148 107-267 348-523 (591)
368 KOG2395 Protein involved in va 96.0 0.1 2.2E-06 49.9 11.3 148 119-268 344-499 (644)
369 KOG4460 Nuclear pore complex, 96.0 0.32 7E-06 46.7 14.4 97 363-466 106-205 (741)
370 TIGR03074 PQQ_membr_DH membran 95.8 2.6 5.6E-05 44.4 21.9 116 162-278 194-353 (764)
371 PF03178 CPSF_A: CPSF A subuni 95.7 0.88 1.9E-05 42.7 17.0 131 220-390 62-202 (321)
372 PHA02713 hypothetical protein; 95.6 1.9 4.2E-05 43.9 19.9 61 340-402 481-545 (557)
373 PF04841 Vps16_N: Vps16, N-ter 95.5 2.6 5.7E-05 41.0 26.0 29 241-269 81-109 (410)
374 KOG2079 Vacuolar assembly/sort 95.5 0.049 1.1E-06 56.5 7.6 97 371-494 98-198 (1206)
375 COG0823 TolB Periplasmic compo 95.2 0.61 1.3E-05 45.3 14.1 111 113-231 242-361 (425)
376 PF02897 Peptidase_S9_N: Proly 95.2 0.71 1.5E-05 45.2 15.0 101 363-491 126-246 (414)
377 PF02897 Peptidase_S9_N: Proly 95.1 3.6 7.7E-05 40.3 26.4 74 109-183 124-213 (414)
378 PF03178 CPSF_A: CPSF A subuni 94.7 2.9 6.2E-05 39.3 17.1 130 130-269 62-202 (321)
379 KOG4441 Proteins containing BT 94.6 3.1 6.7E-05 42.4 17.9 53 440-494 475-534 (571)
380 COG3391 Uncharacterized conser 94.4 5.1 0.00011 38.6 18.3 130 331-491 88-226 (381)
381 PHA02713 hypothetical protein; 94.2 2.1 4.7E-05 43.5 15.8 33 440-472 512-546 (557)
382 PF10647 Gmad1: Lipoprotein Lp 94.1 2.1 4.6E-05 38.5 14.0 106 362-497 25-140 (253)
383 PF06977 SdiA-regulated: SdiA- 93.8 4.7 0.0001 36.0 23.4 167 104-277 17-208 (248)
384 KOG4441 Proteins containing BT 93.7 9.1 0.0002 39.1 20.4 104 119-231 284-407 (571)
385 COG3490 Uncharacterized protei 93.6 1.5 3.3E-05 39.0 11.2 56 436-491 120-181 (366)
386 KOG1897 Damage-specific DNA bi 93.5 12 0.00025 39.6 29.7 56 440-497 839-894 (1096)
387 PF10313 DUF2415: Uncharacteri 93.4 0.33 7.3E-06 29.4 5.0 31 109-139 1-34 (43)
388 PF14870 PSII_BNR: Photosynthe 93.0 6 0.00013 36.4 15.0 154 105-266 141-301 (302)
389 PF00780 CNH: CNH domain; Int 92.8 7.4 0.00016 35.4 23.1 149 210-398 7-173 (275)
390 PF14870 PSII_BNR: Photosynthe 92.7 8.2 0.00018 35.6 18.1 108 357-492 141-253 (302)
391 KOG1916 Nuclear protein, conta 92.6 0.16 3.5E-06 51.8 4.6 86 369-471 192-282 (1283)
392 PF10647 Gmad1: Lipoprotein Lp 92.5 7.7 0.00017 34.9 15.6 141 110-258 25-183 (253)
393 KOG1916 Nuclear protein, conta 92.2 0.072 1.6E-06 54.2 1.6 70 109-179 184-264 (1283)
394 COG3490 Uncharacterized protei 92.0 6.2 0.00013 35.3 12.9 116 341-489 93-243 (366)
395 PF10313 DUF2415: Uncharacteri 92.0 0.7 1.5E-05 28.0 5.1 30 362-391 2-34 (43)
396 PF10168 Nup88: Nuclear pore c 91.9 3 6.5E-05 43.5 12.9 92 362-460 86-180 (717)
397 COG3386 Gluconolactonase [Carb 91.8 11 0.00024 35.0 22.4 112 358-492 160-276 (307)
398 COG3386 Gluconolactonase [Carb 91.7 11 0.00024 34.9 23.2 41 361-402 213-254 (307)
399 PF12234 Rav1p_C: RAVE protein 91.2 7.2 0.00016 39.8 14.3 106 159-268 38-155 (631)
400 PF12234 Rav1p_C: RAVE protein 91.1 5.7 0.00012 40.5 13.5 106 366-499 35-154 (631)
401 KOG2247 WD40 repeat-containing 90.8 0.034 7.3E-07 52.6 -2.1 144 113-264 39-183 (615)
402 PRK10115 protease 2; Provision 90.5 25 0.00055 36.9 27.5 71 110-182 128-209 (686)
403 COG3204 Uncharacterized protei 90.1 7.3 0.00016 35.1 11.7 116 357-498 82-207 (316)
404 COG5167 VID27 Protein involved 89.7 6.8 0.00015 38.1 11.8 60 329-390 573-632 (776)
405 PF06433 Me-amine-dh_H: Methyl 89.1 19 0.00042 33.5 23.5 48 452-500 270-319 (342)
406 PRK13684 Ycf48-like protein; P 89.1 20 0.00044 33.8 17.6 150 108-267 172-329 (334)
407 PF08728 CRT10: CRT10; InterP 88.7 6.9 0.00015 40.3 11.9 117 110-227 102-245 (717)
408 PF15390 DUF4613: Domain of un 88.7 8.3 0.00018 38.3 11.9 119 358-499 54-184 (671)
409 PF06977 SdiA-regulated: SdiA- 88.6 18 0.00038 32.4 24.1 207 236-498 17-247 (248)
410 TIGR02604 Piru_Ver_Nterm putat 88.2 22 0.00048 34.1 14.9 57 435-492 129-204 (367)
411 PF07676 PD40: WD40-like Beta 87.8 2.1 4.6E-05 25.3 5.0 28 472-499 9-39 (39)
412 PF10168 Nup88: Nuclear pore c 87.8 5.1 0.00011 41.9 10.6 73 110-182 86-181 (717)
413 KOG4499 Ca2+-binding protein R 87.7 10 0.00023 32.9 10.5 100 364-481 161-263 (310)
414 PF07569 Hira: TUP1-like enhan 87.7 4.2 9.2E-05 35.6 8.7 64 116-180 18-95 (219)
415 COG5167 VID27 Protein involved 87.4 5.5 0.00012 38.6 9.6 119 371-491 478-623 (776)
416 COG3204 Uncharacterized protei 86.6 25 0.00053 31.9 15.2 159 104-268 81-262 (316)
417 PF07569 Hira: TUP1-like enhan 86.2 6.2 0.00013 34.5 9.0 61 438-499 19-93 (219)
418 TIGR03074 PQQ_membr_DH membran 86.0 51 0.0011 35.0 24.3 113 120-237 194-353 (764)
419 PF14781 BBS2_N: Ciliary BBSom 85.8 15 0.00034 28.9 13.4 118 157-276 5-132 (136)
420 PHA03098 kelch-like protein; P 85.2 42 0.00092 34.1 15.9 51 440-492 437-497 (534)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 84.6 17 0.00037 35.2 11.7 88 146-236 303-406 (415)
422 KOG2377 Uncharacterized conser 84.1 36 0.00079 32.8 13.1 118 147-271 63-187 (657)
423 PF11715 Nup160: Nucleoporin N 83.8 5.7 0.00012 40.6 8.9 40 362-401 216-259 (547)
424 COG3391 Uncharacterized conser 81.7 52 0.0011 31.8 29.6 206 212-481 88-308 (381)
425 PF05694 SBP56: 56kDa selenium 80.4 39 0.00085 32.7 12.0 149 336-490 219-392 (461)
426 PF07995 GSDH: Glucose / Sorbo 80.1 30 0.00066 32.6 11.6 29 363-393 4-32 (331)
427 PF14583 Pectate_lyase22: Olig 79.8 58 0.0013 31.1 22.1 81 206-286 43-127 (386)
428 TIGR02276 beta_rpt_yvtn 40-res 78.4 7.5 0.00016 23.1 4.8 31 439-469 1-32 (42)
429 TIGR02276 beta_rpt_yvtn 40-res 78.2 12 0.00025 22.2 5.8 30 118-147 1-31 (42)
430 smart00564 PQQ beta-propeller 77.8 6.7 0.00015 21.8 4.2 26 251-276 6-31 (33)
431 PHA03098 kelch-like protein; P 77.4 87 0.0019 31.9 17.6 24 371-394 487-515 (534)
432 PF12657 TFIIIC_delta: Transcr 77.1 23 0.00049 29.7 8.9 29 241-269 86-121 (173)
433 PF07676 PD40: WD40-like Beta 76.5 13 0.00028 21.8 5.4 30 148-177 6-38 (39)
434 KOG4460 Nuclear pore complex, 76.3 26 0.00057 34.4 9.7 26 110-135 105-130 (741)
435 KOG1900 Nuclear pore complex, 75.4 1.1E+02 0.0024 34.0 14.8 34 358-391 240-273 (1311)
436 PF14727 PHTB1_N: PTHB1 N-term 75.3 84 0.0018 30.6 28.4 147 120-268 37-203 (418)
437 TIGR03606 non_repeat_PQQ dehyd 74.8 91 0.002 30.8 13.7 31 362-392 31-61 (454)
438 KOG3630 Nuclear pore complex, 74.6 9.5 0.00021 40.9 6.8 62 436-498 162-225 (1405)
439 KOG2377 Uncharacterized conser 73.8 91 0.002 30.3 13.3 103 357-488 63-170 (657)
440 TIGR02604 Piru_Ver_Nterm putat 72.9 91 0.002 29.9 14.9 67 111-179 16-98 (367)
441 PF08728 CRT10: CRT10; InterP 71.8 24 0.00052 36.6 8.9 61 439-499 175-244 (717)
442 PF15390 DUF4613: Domain of un 70.1 1.3E+02 0.0028 30.5 12.9 117 106-228 54-186 (671)
443 PHA02790 Kelch-like protein; P 69.9 1.3E+02 0.0027 30.3 16.6 21 371-394 407-427 (480)
444 PF01011 PQQ: PQQ enzyme repea 69.8 15 0.00032 21.5 4.4 27 253-279 2-28 (38)
445 PF12657 TFIIIC_delta: Transcr 69.4 45 0.00098 27.9 8.9 34 195-228 87-121 (173)
446 KOG3630 Nuclear pore complex, 69.3 9.1 0.0002 41.1 5.4 95 109-203 156-253 (1405)
447 PF14727 PHTB1_N: PTHB1 N-term 69.2 1.2E+02 0.0026 29.7 18.2 153 329-498 37-201 (418)
448 PF11715 Nup160: Nucleoporin N 68.9 12 0.00026 38.3 6.3 39 109-147 215-257 (547)
449 PF08801 Nucleoporin_N: Nup133 68.4 1.2E+02 0.0027 29.6 14.4 16 254-269 39-54 (422)
450 PF12768 Rax2: Cortical protei 67.6 73 0.0016 29.1 10.3 92 382-500 16-122 (281)
451 PF14761 HPS3_N: Hermansky-Pud 67.0 25 0.00055 30.3 6.7 47 121-168 29-77 (215)
452 PF05694 SBP56: 56kDa selenium 66.8 69 0.0015 31.1 10.1 33 360-392 311-344 (461)
453 COG5290 IkappaB kinase complex 66.6 1.7E+02 0.0036 30.8 13.1 148 343-493 95-268 (1243)
454 PLN00033 photosystem II stabil 66.5 1.3E+02 0.0028 29.2 18.6 146 111-266 241-396 (398)
455 KOG4499 Ca2+-binding protein R 64.2 1E+02 0.0022 27.1 17.6 45 366-410 217-261 (310)
456 PF05096 Glu_cyclase_2: Glutam 63.8 1.1E+02 0.0025 27.5 18.5 156 111-277 47-211 (264)
457 PF01436 NHL: NHL repeat; Int 63.7 21 0.00047 19.2 4.1 25 363-387 4-28 (28)
458 PF07995 GSDH: Glucose / Sorbo 62.9 1.4E+02 0.003 28.2 25.1 57 440-496 270-330 (331)
459 PF01011 PQQ: PQQ enzyme repea 62.5 24 0.00052 20.6 4.3 25 375-399 3-27 (38)
460 PHA02790 Kelch-like protein; P 61.0 1.9E+02 0.004 29.1 17.7 104 119-231 271-387 (480)
461 KOG2280 Vacuolar assembly/sort 60.4 2.2E+02 0.0048 29.8 15.7 34 432-465 219-252 (829)
462 KOG3616 Selective LIM binding 59.1 1.1E+02 0.0025 31.7 10.5 69 107-178 13-81 (1636)
463 PF13449 Phytase-like: Esteras 58.7 1.4E+02 0.0031 28.0 11.0 113 363-488 87-231 (326)
464 PF14761 HPS3_N: Hermansky-Pud 58.4 33 0.00072 29.6 5.9 52 439-491 25-79 (215)
465 KOG2247 WD40 repeat-containing 57.8 8 0.00017 37.4 2.4 60 435-495 123-182 (615)
466 KOG1900 Nuclear pore complex, 57.8 2E+02 0.0044 32.2 12.6 36 255-290 93-128 (1311)
467 PF05096 Glu_cyclase_2: Glutam 57.3 1.5E+02 0.0032 26.8 21.8 116 244-400 48-167 (264)
468 PF07250 Glyoxal_oxid_N: Glyox 57.1 1.4E+02 0.0031 26.6 11.2 30 437-468 177-206 (243)
469 TIGR03118 PEPCTERM_chp_1 conse 55.6 1.7E+02 0.0037 27.0 22.8 68 334-403 217-292 (336)
470 KOG3616 Selective LIM binding 54.6 32 0.0007 35.4 6.0 60 436-498 21-80 (1636)
471 PF10395 Utp8: Utp8 family; I 52.7 2.9E+02 0.0063 28.8 14.6 30 108-137 129-158 (670)
472 PRK13615 lipoprotein LpqB; Pro 51.9 2.3E+02 0.0051 28.9 11.6 27 364-390 337-363 (557)
473 PF13449 Phytase-like: Esteras 50.9 2.2E+02 0.0047 26.8 13.0 55 436-491 91-166 (326)
474 PF12768 Rax2: Cortical protei 46.8 2.3E+02 0.005 25.9 12.5 97 107-204 35-147 (281)
475 COG1520 FOG: WD40-like repeat 46.3 2.7E+02 0.0059 26.6 23.3 109 164-278 70-180 (370)
476 PF13570 PQQ_3: PQQ-like domai 44.2 42 0.00091 19.7 3.3 21 371-391 20-40 (40)
477 PF01731 Arylesterase: Arylest 43.2 1.2E+02 0.0026 21.9 6.0 30 361-390 54-84 (86)
478 PF14269 Arylsulfotran_2: Aryl 42.6 1.4E+02 0.003 27.7 8.0 69 111-179 146-219 (299)
479 COG1520 FOG: WD40-like repeat 42.5 3.1E+02 0.0068 26.2 22.0 70 212-281 70-141 (370)
480 PF12341 DUF3639: Protein of u 41.5 59 0.0013 17.5 3.9 25 473-499 3-27 (27)
481 PLN00033 photosystem II stabil 39.8 3.7E+02 0.0079 26.2 16.4 63 436-500 334-398 (398)
482 KOG1983 Tomosyn and related SN 39.5 5.8E+02 0.013 28.5 15.7 29 110-138 37-65 (993)
483 PF14269 Arylsulfotran_2: Aryl 38.6 3.3E+02 0.0071 25.3 11.0 39 363-401 146-184 (299)
484 TIGR03118 PEPCTERM_chp_1 conse 38.0 1.7E+02 0.0037 27.0 7.4 64 436-499 29-116 (336)
485 KOG3522 Predicted guanine nucl 37.0 1.4E+02 0.003 31.6 7.4 135 122-270 549-698 (925)
486 PF14781 BBS2_N: Ciliary BBSom 36.8 2.2E+02 0.0047 22.7 13.7 85 114-202 4-101 (136)
487 COG3823 Glutamine cyclotransfe 36.4 2.9E+02 0.0063 24.0 13.6 68 119-186 55-125 (262)
488 PRK10115 protease 2; Provision 35.4 5.7E+02 0.012 27.1 31.5 71 152-230 128-209 (686)
489 PF03088 Str_synth: Strictosid 34.7 1E+02 0.0023 22.4 4.6 51 447-498 33-85 (89)
490 COG4590 ABC-type uncharacteriz 34.4 1.5E+02 0.0032 29.0 6.6 160 104-271 216-388 (733)
491 PF14779 BBS1: Ciliary BBSome 34.3 3.5E+02 0.0076 24.4 8.9 55 211-265 196-254 (257)
492 KOG4659 Uncharacterized conser 32.8 8E+02 0.017 28.1 21.5 36 103-138 342-384 (1899)
493 PF08954 DUF1900: Domain of un 31.3 1.7E+02 0.0036 23.4 5.7 53 108-160 10-66 (136)
494 KOG2280 Vacuolar assembly/sort 31.2 6.6E+02 0.014 26.6 19.2 39 361-399 217-255 (829)
495 TIGR03548 mutarot_permut cycli 30.8 4.5E+02 0.0097 24.5 15.3 25 370-394 170-198 (323)
496 PF10214 Rrn6: RNA polymerase 30.5 4.9E+02 0.011 28.1 10.8 93 110-203 147-256 (765)
497 TIGR03054 photo_alph_chp1 puta 28.1 2.8E+02 0.006 22.1 6.3 62 123-184 44-117 (135)
498 TIGR02171 Fb_sc_TIGR02171 Fibr 28.0 4.4E+02 0.0096 28.6 9.4 50 436-485 356-412 (912)
499 PF11635 Med16: Mediator compl 27.0 2.8E+02 0.0061 29.8 8.2 83 361-454 260-345 (753)
500 TIGR03606 non_repeat_PQQ dehyd 26.9 2.6E+02 0.0057 27.7 7.4 53 110-162 31-90 (454)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-99 Score=654.15 Aligned_cols=466 Identities=65% Similarity=1.151 Sum_probs=451.7
Q ss_pred CcCeEEEEEEC---CCCCcCCCcEeecCCCCHHHHHHHHHHHhcC-CCCCceeEEecCeeeecchhhhHhhcCCCeeeEE
Q 010816 7 TTNNVMCLLTD---PEGNPLGAPMYFPQNAGPQQLSQIVNKLLNN-EEKLPYAFYISDHELLVPLGSYLEKHKVSVEKVL 82 (500)
Q Consensus 7 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (500)
+..++++.|.. .++.....++.+|....+.+|..++|+|+.+ ++++|+.|+..+.++..+|++.++...++.|.++
T Consensus 10 ~~~~i~~~l~~~~~d~g~~~g~~~~vp~~is~~qL~~l~n~ll~~s~dp~pysf~v~~~ei~~~l~~tL~~~~v~te~~l 89 (480)
T KOG0271|consen 10 ELVTIPLLLVSVATDTGENEGSALLVPGDISTLQLELLCNQLLGNSDDPVPYSFFVTEIEILDSLETTLEKQNVSTEDVL 89 (480)
T ss_pred ccccchhhcccccCCcccccCCceeccccCCHHHHHHHHHHHhhcccCCcceEEEecchHHHHHHHHHHhhcccchhhee
Confidence 55677777765 4567778999999999999999999999988 8899999999999999999999999999999999
Q ss_pred EEEEeecceEeEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC
Q 010816 83 SIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG 162 (500)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~ 162 (500)
.+.|+|+.+|+++|..+|...+.||.++|.|++|+|+|+.||||++|.++|+||+.+..+++.+++|..+|.|++|+|||
T Consensus 90 ~lvyqpqavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 90 TLVYQPQAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred eEEeccchhhcccccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~ 242 (500)
+.||+|+.||+|++||+++|++....+.+|+.+|++++|.|.+...+|++++++|.||+|+|||+..++|+.++.||+.+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~ 249 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS 249 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
|+|+.|..+|+|++|+.|++|++|+...|++.+++++|.++|+.++.+.++.++.++|++++....+..+..+.++.+|+
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~ 329 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYE 329 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888899999999999
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~ 402 (500)
.+-+..++++++||+|+++++|++...+.+..++.+|+..|+.+.||||++++|++|.|..|++||.++|+.+.+|+||.
T Consensus 330 ~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv 409 (480)
T KOG0271|consen 330 AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV 409 (480)
T ss_pred HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc
Confidence 99888889999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
++||++ +|+.|.++|++||.|.++++|+++++++...++||.++|++++|+||
T Consensus 410 ~~VYqv---------------------------awsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspD 462 (480)
T KOG0271|consen 410 AAVYQV---------------------------AWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPD 462 (480)
T ss_pred ceeEEE---------------------------EeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCC
Confidence 999998 78999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCcEEEec
Q 010816 483 GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW~ 499 (500)
|+++++|+.|+.+++|.
T Consensus 463 G~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 463 GQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceeecCCCceEEEeec
Confidence 99999999999999996
No 2
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=7.3e-55 Score=376.95 Aligned_cols=373 Identities=33% Similarity=0.527 Sum_probs=311.9
Q ss_pred cCcCeEEEEEECC--CCCcCCCcEeecCCCCHHHHHHHHHHHhcCC----CCCceeEEecCeeeecchhhhHhhcCCCee
Q 010816 6 ETTNNVMCLLTDP--EGNPLGAPMYFPQNAGPQQLSQIVNKLLNNE----EKLPYAFYISDHELLVPLGSYLEKHKVSVE 79 (500)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (500)
...+||++.|+++ ++.+++.|+++|.+.++++|++++|+|+..+ ++.||+|++.++.|+.+|.+|+++++++.|
T Consensus 3 ~~~~qvqvrF~Tk~e~~aVpD~p~~iP~~~~r~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE 82 (423)
T KOG0313|consen 3 INSGQVQVRFFTKNEDYAVPDVPFAIPTSVERYGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSE 82 (423)
T ss_pred CCcceEEEEEEecccccCCCCcceeccCcceEccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChh
Confidence 3468999999865 4789999999999999999999999999888 789999999999999999999999999999
Q ss_pred eEEEEEEeecceEeEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEc
Q 010816 80 KVLSIVYQPQAVFRIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS 159 (500)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s 159 (500)
.+++|+|... +.|+..+ .---|.+.|.++... +++++||++||.++|||.. |+..+.+.||.++|.+++|.
T Consensus 83 ~~leIEYv~~----~~aP~pl--~~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 83 EILEIEYVEA----ITAPKPL--QCFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred heeEEEEEEe----cCCCCcc--ccccchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEE
Confidence 9999999743 2222211 112489999999987 8899999999999999986 45667788999999988885
Q ss_pred CC---CCEEEEEeCCCeEEEEeCCCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-----
Q 010816 160 AD---GKHLVSGSKAGELQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS----- 228 (500)
Q Consensus 160 ~~---~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~----- 228 (500)
.. ...+++++.|.++++|..+.+..... .-.||+..|.+++-.+ ++.+|++||.|.+++||+..
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~-----sgtr~~SgS~D~~lkiWs~~~~~~~ 228 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDS-----SGTRFCSGSWDTMLKIWSVETDEED 228 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecC-----CCCeEEeecccceeeecccCCCccc
Confidence 32 34699999999999999887753211 1249999999987554 56799999999999999932
Q ss_pred --------------------CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816 229 --------------------LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (500)
Q Consensus 229 --------------------~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~ 288 (500)
++..+..+.||+.+|.++.|++...++++++|.+|+.||+.+++....+..
T Consensus 229 ~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~--------- 299 (423)
T KOG0313|consen 229 ELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTT--------- 299 (423)
T ss_pred cccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeec---------
Confidence 123466788999999999999988999999999999999988765443221
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~ 368 (500)
...++|+++
T Consensus 300 -----------------------------------------------------------------------~ksl~~i~~ 308 (423)
T KOG0313|consen 300 -----------------------------------------------------------------------NKSLNCISY 308 (423)
T ss_pred -----------------------------------------------------------------------CcceeEeec
Confidence 134678999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEE
Q 010816 369 SPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLL 444 (500)
Q Consensus 369 sp~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l 444 (500)
+|..++||+|+.|+.|++||.+++. ....|.||.+.|..+ .|+|.. .+|
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssv---------------------------kwsp~~~~~~ 361 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSV---------------------------KWSPTNEFQL 361 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhhe---------------------------ecCCCCceEE
Confidence 9999999999999999999998753 346788999888776 467765 578
Q ss_pred EEEECCCcEEEEECCCcc-ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 445 LSGSKDSTLKVWDIRTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
++|+.|+++++||+++.+ .+..+.+|.++|++++|+. +..|+|||.|++|+|+.+
T Consensus 362 ~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 362 VSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred EEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 899999999999999877 8899999999999999985 679999999999999864
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.7e-50 Score=354.47 Aligned_cols=282 Identities=28% Similarity=0.508 Sum_probs=260.7
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEeCCCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
|-+.+|..+.|++|++.|||||.+|.+++|+..+...+..+.||...|.++.|+|. +..+|||+.||++++|+..+..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 66889999999999999999999999999999999888999999999999999997 5689999999999999998765
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCe
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCT 262 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~ 262 (500)
.+. .+.+|...|..++|+| +++.+++++.|.+-++||+++++.+....||...|.+++|.+||. ++||+.|..
T Consensus 253 ~l~-~l~gH~~RVs~VafHP-----sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~ 326 (459)
T KOG0272|consen 253 PLQ-DLEGHLARVSRVAFHP-----SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL 326 (459)
T ss_pred chh-hhhcchhhheeeeecC-----CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccch
Confidence 544 5889999999999987 567899999999999999999999888899999999999999986 567999999
Q ss_pred EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~ 342 (500)
-||||+++|+++..+
T Consensus 327 ~RvWDlRtgr~im~L----------------------------------------------------------------- 341 (459)
T KOG0272|consen 327 GRVWDLRTGRCIMFL----------------------------------------------------------------- 341 (459)
T ss_pred hheeecccCcEEEEe-----------------------------------------------------------------
Confidence 999999998765433
Q ss_pred EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (500)
Q Consensus 343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 422 (500)
.+|.+.|.+|+|+|+|..|||||.|++++|||++..+.+.++.+|..-|..|+|
T Consensus 342 --------------~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~------------ 395 (459)
T KOG0272|consen 342 --------------AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKY------------ 395 (459)
T ss_pred --------------cccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEe------------
Confidence 357778899999999999999999999999999999999999999999988865
Q ss_pred eeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 423 YCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 423 ~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+| .|.+|+++|.|++++||..++..+++.+.||.++|.+++.+||+++|+|++.|.++++|.
T Consensus 396 ---------------~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 396 ---------------SPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ---------------cccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 66 789999999999999999999999999999999999999999999999999999999996
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6e-50 Score=346.60 Aligned_cols=287 Identities=32% Similarity=0.573 Sum_probs=256.2
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
...+.||..+|.|++|+|+|+.|++|+.|.++|+||+.+..+.. ...+|..+|.+++|+| ++..+++|+.||+|
T Consensus 108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-t~KgH~~WVlcvawsP-----Dgk~iASG~~dg~I 181 (480)
T KOG0271|consen 108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-TCKGHKNWVLCVAWSP-----DGKKIASGSKDGSI 181 (480)
T ss_pred ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce-eecCCccEEEEEEECC-----CcchhhccccCCeE
Confidence 34567999999999999999999999999999999998876543 5789999999999998 56799999999999
Q ss_pred EEEECCCCeEE-EEecCccccEEEEEeCCC------CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 223 RIWDVSLRKCV-ICLSGHTLAVTCVKWGGD------GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 223 ~iwd~~~~~~~-~~~~~h~~~v~~~~~~~~------~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
++||..+++++ ..+.+|...|++++|.|- ..|++++.||+|+|||+..++++..+.+|..+|+|+.+-.
T Consensus 182 ~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG---- 257 (480)
T KOG0271|consen 182 RLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG---- 257 (480)
T ss_pred EEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC----
Confidence 99999988764 578999999999999652 3699999999999999999999999999999999998753
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC------
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS------ 369 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s------ 369 (500)
...+++||.|++|++|+... ......+.||..+|+.++.|
T Consensus 258 ---------------------------------~gliySgS~DrtIkvw~a~d-G~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 258 ---------------------------------EGLIYSGSQDRTIKVWRALD-GKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred ---------------------------------CceEEecCCCceEEEEEccc-hhHHHhhcccchheeeeeccchhhhh
Confidence 34789999999999999654 34566789999999999877
Q ss_pred -----CCCC-------------------------EEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 370 -----PDGQ-------------------------WVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 370 -----p~g~-------------------------~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
|.++ .|++||.|.++.+|+... .+++....||...|+.+
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V---------- 373 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHV---------- 373 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeE----------
Confidence 3343 499999999999999765 45778889999999888
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.||||++++|+||.|+.|++||.++|+.+..++||-+.|+.++||.|.+.|+|||.|.++++|
T Consensus 374 -----------------~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 374 -----------------SFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred -----------------EECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 010816 499 MG 500 (500)
Q Consensus 499 ~~ 500 (500)
+.
T Consensus 437 ~V 438 (480)
T KOG0271|consen 437 DV 438 (480)
T ss_pred Ee
Confidence 74
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.5e-47 Score=319.40 Aligned_cols=295 Identities=29% Similarity=0.483 Sum_probs=262.6
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.+|+||.+.|.++.|++|.++|++++.||.+.|||.-+....+.+.-...+|..++|+|.|+++|+|+.|+...||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 57899999999999999999999999999999999988888877877889999999999999999999999999999864
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg 261 (500)
.... +.+ +....+.+|+..++|+.|..|+.|+|++.|.
T Consensus 129 ~d~~----------------------------------g~~--------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~ 166 (343)
T KOG0286|consen 129 RDAE----------------------------------GNV--------RVSRELAGHTGYLSCCRFLDDNHILTGSGDM 166 (343)
T ss_pred cccc----------------------------------ccc--------eeeeeecCccceeEEEEEcCCCceEecCCCc
Confidence 3211 111 1123467999999999999999999999999
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
+..+||+++|+.++.+.+|...|.+++++|. .++.+++|+.|+..
T Consensus 167 TCalWDie~g~~~~~f~GH~gDV~slsl~p~-----------------------------------~~ntFvSg~cD~~a 211 (343)
T KOG0286|consen 167 TCALWDIETGQQTQVFHGHTGDVMSLSLSPS-----------------------------------DGNTFVSGGCDKSA 211 (343)
T ss_pred eEEEEEcccceEEEEecCCcccEEEEecCCC-----------------------------------CCCeEEecccccce
Confidence 9999999999999999999999999998873 24689999999999
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 421 (500)
++||++.. ...+.+.+|+..|++|.|.|+|.-+++|+.|++.|+||++..+.+.+|.. ..
T Consensus 212 klWD~R~~-~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~-~~------------------ 271 (343)
T KOG0286|consen 212 KLWDVRSG-QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH-DS------------------ 271 (343)
T ss_pred eeeeccCc-ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc-Cc------------------
Confidence 99999876 56778999999999999999999999999999999999999988887762 11
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..+.++.++||..|++|.+|..|.++.+||.-.++....+.||..+|.+|..+|||..++|||.|.++|||.
T Consensus 272 ------~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 272 ------IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ------ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 123344557899999999999999999999999999999999999999999999999999999999999994
No 6
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.9e-44 Score=334.42 Aligned_cols=374 Identities=25% Similarity=0.432 Sum_probs=294.4
Q ss_pred ccccccccC-CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeE
Q 010816 98 NRCSATIAG-HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGEL 174 (500)
Q Consensus 98 ~~~~~~~~g-h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i 174 (500)
..+....++ |++||.-++|+|.+.+||+|+.|+.++|||+..+.+.+.++||.+.|.++.|+|+-. .|++|..|+++
T Consensus 94 gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v 173 (775)
T KOG0319|consen 94 GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTV 173 (775)
T ss_pred chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceE
Confidence 355566666 999999999999999999999999999999999999999999999999999999754 58999999999
Q ss_pred EEEeCCCCCcccccccCcccceEEEEeeeeecC-----------------------------------------CCCceE
Q 010816 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN-----------------------------------------APCRRF 213 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----------------------------------------~~~~~~ 213 (500)
++||++++.........|...|+++.+.+...+ ..+..+
T Consensus 174 ~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~ 253 (775)
T KOG0319|consen 174 RVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYI 253 (775)
T ss_pred EEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEE
Confidence 999999776544556778888888877642110 012356
Q ss_pred EEEeCCCcEEEEECCCCeEE------------------------------------------------------------
Q 010816 214 VSASKDGDARIWDVSLRKCV------------------------------------------------------------ 233 (500)
Q Consensus 214 ~s~s~dg~v~iwd~~~~~~~------------------------------------------------------------ 233 (500)
+++|.+|.+++||.+.++++
T Consensus 254 ~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG 333 (775)
T KOG0319|consen 254 ITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLG 333 (775)
T ss_pred EEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecC
Confidence 77777777777775443221
Q ss_pred -------------------------EEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC----eeEEEeecCCce
Q 010816 234 -------------------------ICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG----KLIRELKGHGHW 283 (500)
Q Consensus 234 -------------------------~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~----~~~~~~~~~~~~ 283 (500)
..+.||+..|.++....+| .|++|+.|.++++|.+..+ .++....+|.+.
T Consensus 334 ~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s 413 (775)
T KOG0319|consen 334 PEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS 413 (775)
T ss_pred CccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc
Confidence 1124677788888733344 8999999999999976433 234566789999
Q ss_pred EEEEEecCcc--eeeeccccCCCCCCCCHH--------HHH----HHHHH-hhhhhc-CCCCcEEEEeeCCCeEEEEcCC
Q 010816 284 VNSLALSTEY--ALRTGAFDHTGKQYSSPE--------EMK----KAALE-RYNKIK-GNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 284 v~~~~~~~~~--~~~~~~~~~~~~~~~~~~--------~~~----~~~~~-~~~~~~-~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
|.+++.+..+ .+.+++.|.+.+.+.-+. ... ....+ -.+.+. .++...+++||.|.+.++|++.
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 9999886543 344455554443332221 010 01111 111222 2334578999999999999987
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 427 (500)
.......+.||...|.||.|+|..+.+||+|.|++|+||.+.+..|+++|.||...|....
T Consensus 494 -~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~------------------ 554 (775)
T KOG0319|consen 494 -QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRAS------------------ 554 (775)
T ss_pred -CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeee------------------
Confidence 4455678899999999999999999999999999999999999999999999999998874
Q ss_pred ccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|-.+|.+|+|++.||.++||++++.++..++.+|+++||+++-+|.+..++|||.||+|.+|.
T Consensus 555 ---------F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 555 ---------FIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ---------eeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence 457899999999999999999999999999999999999999999999999999999999995
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-42 Score=310.94 Aligned_cols=388 Identities=22% Similarity=0.398 Sum_probs=301.1
Q ss_pred eeeEEEEEEeecceEeEEe-------------cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE
Q 010816 78 VEKVLSIVYQPQAVFRIRP-------------VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF 144 (500)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~ 144 (500)
...++...+.|...||+.. +-+...++..|+.-|.|+.|+|||.++||++.||.|.|||-.+++.+.
T Consensus 147 Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg 226 (603)
T KOG0318|consen 147 SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVG 226 (603)
T ss_pred ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEE
Confidence 4456777788877777632 223445677899999999999999999999999999999999999988
Q ss_pred Eec---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc--cceEEEEeeeeecCCCCceEEEEeCC
Q 010816 145 KCT---GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVHLNAPCRRFVSASKD 219 (500)
Q Consensus 145 ~~~---~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~s~s~d 219 (500)
.+. +|.+.|.+++|+||++.++++|.|.++++||+.+.+.......+.+ ....++-|. ...+++.+.+
T Consensus 227 ~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq-------kd~lItVSl~ 299 (603)
T KOG0318|consen 227 ELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ-------KDHLITVSLS 299 (603)
T ss_pred EecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe-------CCeEEEEEcC
Confidence 887 8999999999999999999999999999999999877654443333 344455564 2479999999
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeee
Q 010816 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~ 297 (500)
|++.+++......+..+.||+..|+++..++++ .|++|+.||.|.-||..+|..-+.. +.|...|..++.+....+.+
T Consensus 300 G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 300 GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 999999999999999999999999999999987 6999999999999999887655443 56777777777766444444
Q ss_pred ccccCCCCCC-------C---------CHHHHH--------------------------HHHH-Hhhhh-hcCCCCcEEE
Q 010816 298 GAFDHTGKQY-------S---------SPEEMK--------------------------KAAL-ERYNK-IKGNAPERLV 333 (500)
Q Consensus 298 ~~~~~~~~~~-------~---------~~~~~~--------------------------~~~~-~~~~~-~~~~~~~~~~ 333 (500)
..+|..-+.. . .|.... ...+ +.... ........++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 4433221110 0 000000 0000 00000 0123356788
Q ss_pred EeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE-EEeCCcccEEEEEee
Q 010816 334 SGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA-VFRGHVGPVYQIRFE 411 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~ 411 (500)
.|+.|+.++++.+.... .....+..|...|++++||||+.+||+|...+.+.+||+.+.+... .+.-|...|.++
T Consensus 460 VGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~--- 536 (603)
T KOG0318|consen 460 VGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCV--- 536 (603)
T ss_pred EecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEE---
Confidence 99999999999986543 3445678899999999999999999999999999999999987632 334488888777
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccccCcccCEEEEEEcCCCCEEEEEe
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~ 490 (500)
+|+|+..++|+||.|..|.||++..... +.....|...|+.|.|- |...++|.|
T Consensus 537 ------------------------aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG 591 (603)
T KOG0318|consen 537 ------------------------AWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSG 591 (603)
T ss_pred ------------------------EeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEecc
Confidence 8999999999999999999999987543 33445688889999996 457899999
Q ss_pred CCCcEEEecC
Q 010816 491 KDRVLKLWMG 500 (500)
Q Consensus 491 ~D~~v~iW~~ 500 (500)
.|..||+|..
T Consensus 592 ~Da~iK~W~v 601 (603)
T KOG0318|consen 592 QDANIKVWNV 601 (603)
T ss_pred CcceeEEecc
Confidence 9999999974
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-44 Score=318.16 Aligned_cols=253 Identities=31% Similarity=0.539 Sum_probs=228.4
Q ss_pred eEEeccc--ccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE
Q 010816 93 RIRPVNR--CSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG 168 (500)
Q Consensus 93 ~~~~~~~--~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 168 (500)
++|.... ...+|.||++.|.++.|+|. +..||||+.||++++|++++..++..+.+|...|..++|+|+|++|+|+
T Consensus 200 kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta 279 (459)
T KOG0272|consen 200 KVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA 279 (459)
T ss_pred eEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec
Confidence 4444443 45678999999999999997 5689999999999999999999999999999999999999999999999
Q ss_pred eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe
Q 010816 169 SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248 (500)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 248 (500)
+.|.+-++||++++.... ...||...|.+++|+| ++..+++||.|..-||||++++.|+..+.||..+|.++.|
T Consensus 280 sfD~tWRlWD~~tk~ElL-~QEGHs~~v~~iaf~~-----DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~f 353 (459)
T KOG0272|consen 280 SFDSTWRLWDLETKSELL-LQEGHSKGVFSIAFQP-----DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAF 353 (459)
T ss_pred ccccchhhcccccchhhH-hhcccccccceeEecC-----CCceeeccCccchhheeecccCcEEEEecccccceeeEeE
Confidence 999999999999987543 4689999999999987 5678999999999999999999999999999999999999
Q ss_pred CCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 249 GGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 249 ~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
+|+|+ ++||+.|++++|||++..+.
T Consensus 354 sPNGy~lATgs~Dnt~kVWDLR~r~~------------------------------------------------------ 379 (459)
T KOG0272|consen 354 SPNGYHLATGSSDNTCKVWDLRMRSE------------------------------------------------------ 379 (459)
T ss_pred CCCceEEeecCCCCcEEEeeeccccc------------------------------------------------------
Confidence 99996 88999999999999875332
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
...+.+|.+.|+.|.|+| .|.+|+|+|+|++++||...++.+++++.||++.|.
T Consensus 380 -------------------------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~ 434 (459)
T KOG0272|consen 380 -------------------------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVI 434 (459)
T ss_pred -------------------------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceE
Confidence 233457888899999999 689999999999999999999999999999999998
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
++ ..++|++++++++.|+++|+|.
T Consensus 435 s~---------------------------Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 435 SL---------------------------DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EE---------------------------EeccCCceEEEeccCceeeecc
Confidence 88 4589999999999999999995
No 9
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-43 Score=305.69 Aligned_cols=306 Identities=29% Similarity=0.459 Sum_probs=272.3
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
.++...+.||..+|+.+-|+|+...+++++.|++|++||..+++....++||++.|..++|+..|++|++++.|=.+++|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLW 177 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhhe
Confidence 34566778999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT 256 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t 256 (500)
|..+-......+.+|+..|.++.|.|.. ..+++++.|.+|+.|++.++-|++++.+|...|..+..+.||. +++
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g-----d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG-----DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEecC-----CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 9876422234577899999999999863 5899999999999999999999999999999999999999986 667
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
++.|.++++|-+.++++...++.|+.+|.++++.|..+... -..++++
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~--------------------------------i~~at~~ 300 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS--------------------------------ISEATGS 300 (406)
T ss_pred cCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc--------------------------------hhhccCC
Confidence 99999999999999988899999999999999887532100 0011111
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
. ..++++++++.|++|++||+.+|.++.++.||...|..+
T Consensus 301 ~--------------------------------~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~-------- 340 (406)
T KOG0295|consen 301 T--------------------------------NGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV-------- 340 (406)
T ss_pred C--------------------------------CCccEEEeecccceEEEEeccCCeEEEEEecccceeeee--------
Confidence 1 036789999999999999999999999999999999888
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
+|+|.|+||+++..|+++++||++.+++++.+..|..-|++++|+.+-.+++||+-|.+++
T Consensus 341 -------------------af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~K 401 (406)
T KOG0295|consen 341 -------------------AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVK 401 (406)
T ss_pred -------------------EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceee
Confidence 5699999999999999999999999999999999999999999999999999999999999
Q ss_pred Eec
Q 010816 497 LWM 499 (500)
Q Consensus 497 iW~ 499 (500)
+|+
T Consensus 402 vwE 404 (406)
T KOG0295|consen 402 VWE 404 (406)
T ss_pred eee
Confidence 997
No 10
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.5e-42 Score=297.88 Aligned_cols=329 Identities=24% Similarity=0.399 Sum_probs=259.0
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
...++.+|++.|++++.+|+.+++|||+.|....+|++.++.....+.+|...|+|+.|+.||.+||||+.+|.|++|+.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV 135 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
.++..... +...-..+.=+.|+| ....|++|+.||.+.+|.+..+...+.+.||+.+++|-.|.|+| .++++.
T Consensus 136 stg~~~~~-~~~e~~dieWl~WHp-----~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 136 STGGEQWK-LDQEVEDIEWLKWHP-----RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY 209 (399)
T ss_pred ccCceEEE-eecccCceEEEEecc-----cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEe
Confidence 98865433 222222333344555 34689999999999999999988888999999999999999998 588999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
.||+|++||+.+++.+..+.... ....++.+... +..++.|+.
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~------------------------------------~~~~~~g~~ 253 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLA------------------------------------GSTLTKGNS 253 (399)
T ss_pred cCceEEEEecCCCceeEEecccccCcCCccccccc------------------------------------cceeEeccC
Confidence 99999999999998877765322 12222222211 233445555
Q ss_pred CCeEEEEcCCCCCC-------CceeeecccCcEEEEEE---CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 338 DFTMFLWEPAVSKQ-------PKTRMTGHQQLVNHVYF---SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 338 d~~v~~wd~~~~~~-------~~~~~~~h~~~v~~l~~---sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
++.+++-.....+. ......++...+.||.+ +..=.+.|+|+.||+|.|||+.+.++-..+ .|..+|.+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~ 332 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTK 332 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEE
Confidence 55444433221110 11112244445555554 445678899999999999999876654443 47777877
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA 487 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 487 (500)
+.| -+ ..+|++++.||.|+.||.++|+++..+.||...|++++.+|++++++
T Consensus 333 l~w---------------------------~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 333 LKW---------------------------LN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred EEE---------------------------cC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence 754 44 67999999999999999999999999999999999999999999999
Q ss_pred EEeCCCcEEEec
Q 010816 488 SGGKDRVLKLWM 499 (500)
Q Consensus 488 s~~~D~~v~iW~ 499 (500)
|+|.|++.++++
T Consensus 385 T~s~D~~a~VF~ 396 (399)
T KOG0296|consen 385 TVSDDNTALVFE 396 (399)
T ss_pred EecCCCeEEEEe
Confidence 999999999986
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-41 Score=300.15 Aligned_cols=322 Identities=28% Similarity=0.494 Sum_probs=280.7
Q ss_pred cCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC--c-----eeEE---ecC----CCCCEEEEEEcCCCCEEEEEe
Q 010816 105 AGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ--T-----PMFK---CTG----HKNWVLCIAWSADGKHLVSGS 169 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~--~-----~~~~---~~~----h~~~v~~v~~s~~~~~l~s~~ 169 (500)
..|..+|.+++|+|-.. .+|+|+.|-+.++|++... . .+.. ..+ -+..|++++|+.+|..||+|+
T Consensus 175 l~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~ 254 (524)
T KOG0273|consen 175 LRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS 254 (524)
T ss_pred ccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee
Confidence 34999999999999877 8999999999999998641 1 0100 111 246799999999999999999
Q ss_pred CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (500)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~ 249 (500)
.||.+++|+...+. ...+..|+++|.++.|+. .+.++++++.|+++.+||..++.+...+.-|..+-..+.|-
T Consensus 255 ~~G~~riw~~~G~l--~~tl~~HkgPI~slKWnk-----~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~ 327 (524)
T KOG0273|consen 255 EDGEARIWNKDGNL--ISTLGQHKGPIFSLKWNK-----KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ 327 (524)
T ss_pred cCcEEEEEecCchh--hhhhhccCCceEEEEEcC-----CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence 99999999975432 235788999999999975 45689999999999999999999999888888887789999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 250 ~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
.+..+++++.|+.|+|+.+...+++.++.+|...|.++.+.|. +
T Consensus 328 ~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~t------------------------------------g 371 (524)
T KOG0273|consen 328 SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPT------------------------------------G 371 (524)
T ss_pred cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCC------------------------------------C
Confidence 8889999999999999999988999999999999999998775 3
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC---------EEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ---------WVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~---------~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
..|+++|+|++++||.... ......+.+|...|..+.|+|+|. .|++++.|++|++||+..|.++.+|..
T Consensus 372 ~LLaS~SdD~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k 450 (524)
T KOG0273|consen 372 SLLASCSDDGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK 450 (524)
T ss_pred ceEEEecCCCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc
Confidence 4689999999999998543 345667889999999999999654 799999999999999999999999999
Q ss_pred CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc
Q 010816 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 480 (500)
Q Consensus 401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 480 (500)
|..+|+++ +|+|+|+++|+|+.||.|++|+++++++.+...+ .+.|+.|+|+
T Consensus 451 H~~pVysv---------------------------afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn 502 (524)
T KOG0273|consen 451 HQEPVYSV---------------------------AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWN 502 (524)
T ss_pred CCCceEEE---------------------------EecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEc
Confidence 99999998 5699999999999999999999999999988876 4569999999
Q ss_pred CCCCEEEEEeCCCcEEEe
Q 010816 481 PDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 481 ~dg~~l~s~~~D~~v~iW 498 (500)
.+|.+|..+-.|+.+.+-
T Consensus 503 ~~G~kl~~~~sd~~vcvl 520 (524)
T KOG0273|consen 503 AAGDKLGACASDGSVCVL 520 (524)
T ss_pred CCCCEEEEEecCCCceEE
Confidence 999999999999888764
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-41 Score=279.12 Aligned_cols=285 Identities=29% Similarity=0.521 Sum_probs=235.8
Q ss_pred cccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCC-----CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 101 SATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLN-----TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~-----~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
..++.||++.|+.++..+. ...+.+++.|.++.+|++. .+.++..++||+..|..+..++||++.++++.|+++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 3578899999999999987 5678899999999999875 366788899999999999999999999999999999
Q ss_pred EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCC
Q 010816 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDG 252 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 252 (500)
++||+.+|+.. +.+.+|...|.++++++ +.+++++||.|.++++|+.-. .|..++..+ ...|+|+.|+|+.
T Consensus 88 rlWDl~~g~~t-~~f~GH~~dVlsva~s~-----dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~ 160 (315)
T KOG0279|consen 88 RLWDLATGEST-RRFVGHTKDVLSVAFST-----DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNE 160 (315)
T ss_pred EEEEecCCcEE-EEEEecCCceEEEEecC-----CCceeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCC
Confidence 99999998554 46899999999999876 557899999999999999754 455555443 7889999999863
Q ss_pred ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
+|+++++|++|++||+++-+..
T Consensus 161 ~~p~Ivs~s~DktvKvWnl~~~~l~------------------------------------------------------- 185 (315)
T KOG0279|consen 161 SNPIIVSASWDKTVKVWNLRNCQLR------------------------------------------------------- 185 (315)
T ss_pred CCcEEEEccCCceEEEEccCCcchh-------------------------------------------------------
Confidence 6889999999999998753221
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
..+.||+..++.+++||||.+.++|+.||.+.+||+..++.+..+ +|...|.++
T Consensus 186 ------------------------~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-~a~~~v~sl- 239 (315)
T KOG0279|consen 186 ------------------------TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-EAFDIVNSL- 239 (315)
T ss_pred ------------------------hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-cCCCeEeeE-
Confidence 223468888999999999999999999999999999999987665 456666666
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC----c-----ccCEEEEEEc
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG----H-----ADEVFAVDWS 480 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----h-----~~~V~~l~~s 480 (500)
+|+|+.-+|+.+ .+..|+|||+.++.++..+.- . .-.-.+++|+
T Consensus 240 --------------------------~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 240 --------------------------CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred --------------------------EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 568877666554 455599999999887765432 1 1123678999
Q ss_pred CCCCEEEEEeCCCcEEEecC
Q 010816 481 PDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 481 ~dg~~l~s~~~D~~v~iW~~ 500 (500)
+||+.|++|-.|+.|++|+.
T Consensus 293 ~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 293 ADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred CCCcEEEeeecCCcEEEEEe
Confidence 99999999999999999973
No 13
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.7e-41 Score=284.39 Aligned_cols=286 Identities=26% Similarity=0.538 Sum_probs=240.6
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.+.||.+.|..+.|+|+|..||||+.|..|.+|++.. -+....+++|.+.|..+.|++|+..|++++.|++++.||.++
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t 121 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET 121 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence 4689999999999999999999999999999999654 344567889999999999999999999999999999999999
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
|+... ...+|...|+++. |...+ ...+.+++.|+++|+||++...+++++. ....++++.|..++ .+++|+-|
T Consensus 122 G~~~r-k~k~h~~~vNs~~--p~rrg--~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 122 GKRIR-KHKGHTSFVNSLD--PSRRG--PQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ceeee-hhccccceeeecC--ccccC--CeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 98765 5788999998886 43322 2467789999999999999888777653 35678899997654 57888888
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
+.|++||++.+...
T Consensus 196 n~ikvWd~r~~d~~------------------------------------------------------------------ 209 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGL------------------------------------------------------------------ 209 (338)
T ss_pred CceeeeccccCcce------------------------------------------------------------------
Confidence 88888887764332
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CceEEEEeCCcc--cEEEEEeeeee
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG--PVYQIRFELIY 414 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~--~v~~~~~~~~~ 414 (500)
..+.||.+.|+.++.+|+|.++.+-+.|.++++||.+. .+++.++.+|.. ..+.+.
T Consensus 210 -------------~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~----- 271 (338)
T KOG0265|consen 210 -------------YTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLK----- 271 (338)
T ss_pred -------------EEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcce-----
Confidence 33457888899999999999999999999999999874 356778877532 222222
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
.+|+|+++.+.+|+.|..+++||......+..++||.+.|.+++|+|....|.+++.|++
T Consensus 272 --------------------cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~ 331 (338)
T KOG0265|consen 272 --------------------CSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKT 331 (338)
T ss_pred --------------------eeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCce
Confidence 279999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 010816 495 LKLW 498 (500)
Q Consensus 495 v~iW 498 (500)
|++=
T Consensus 332 i~lg 335 (338)
T KOG0265|consen 332 IYLG 335 (338)
T ss_pred eEee
Confidence 9873
No 14
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.9e-41 Score=315.07 Aligned_cols=364 Identities=25% Similarity=0.422 Sum_probs=278.9
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
+-.+.++++++.||+++|++++..+-+++|++.+++.+...+. |+.||.-++|+|.|.+|++|+.|+.+++||+..+.+
T Consensus 60 ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~ 139 (775)
T KOG0319|consen 60 EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYC 139 (775)
T ss_pred cchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEE
Confidence 3456799999999999999999999999999999988877777 999999999999999999999999999999987765
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC-eEEEEeCCCe
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~ 262 (500)
. ..+.||.+.|.++.|+|.... ..+++|+.|+.+++||++. ..|+..+..|.+.|+++++.+|+ .++++++|..
T Consensus 140 t-h~fkG~gGvVssl~F~~~~~~---~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkv 215 (775)
T KOG0319|consen 140 T-HSFKGHGGVVSSLLFHPHWNR---WLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKV 215 (775)
T ss_pred E-EEecCCCceEEEEEeCCccch---hheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcE
Confidence 4 468999999999999885432 5789999999999999984 44577788999999999998876 5888999999
Q ss_pred EEEEeCCCCeeEEEeec----------CC--------------c------------------------------------
Q 010816 263 IKVWETTQGKLIRELKG----------HG--------------H------------------------------------ 282 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~----------~~--------------~------------------------------------ 282 (500)
+.+||+.+.+..+.+.. +. .
T Consensus 216 i~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~ 295 (775)
T KOG0319|consen 216 IIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQ 295 (775)
T ss_pred EEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCc
Confidence 99999743322111100 00 0
Q ss_pred -----------------------------eEEEEEec------------------------------------------C
Q 010816 283 -----------------------------WVNSLALS------------------------------------------T 291 (500)
Q Consensus 283 -----------------------------~v~~~~~~------------------------------------------~ 291 (500)
.|..+.+- .
T Consensus 296 ~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~ 375 (775)
T KOG0319|consen 296 LLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS 375 (775)
T ss_pred eEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc
Confidence 00000000 0
Q ss_pred cc-eeeeccccCCCCCCCC-----HHHHHHHHHHhhhh-----hcCCCCcEEEEeeCCCeEEEEcCCCCCC--Cc-----
Q 010816 292 EY-ALRTGAFDHTGKQYSS-----PEEMKKAALERYNK-----IKGNAPERLVSGSDDFTMFLWEPAVSKQ--PK----- 353 (500)
Q Consensus 292 ~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~----- 353 (500)
.+ .+.+++.|.+...+.- ............+. ........|+++|.|.++++|++...+. ..
T Consensus 376 ~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~ 455 (775)
T KOG0319|consen 376 SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTC 455 (775)
T ss_pred cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehh
Confidence 00 0000001111000100 00000000000000 0112345789999999999999865221 11
Q ss_pred -eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816 354 -TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (500)
Q Consensus 354 -~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (500)
.....|.+.|+||+++|+..++||||.|++.+||+++.++...++.||+..+++++
T Consensus 456 ~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~----------------------- 512 (775)
T KOG0319|consen 456 RYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVS----------------------- 512 (775)
T ss_pred hHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEE-----------------------
Confidence 13457999999999999999999999999999999999999999999999999995
Q ss_pred eeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 433 ~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
|+|..+.+|++|.|++|+||.+.+..+++++.||...|..+.|-.+|+.|+|+++||.++||+.
T Consensus 513 ----Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 513 ----FSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred ----eccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999973
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.3e-40 Score=307.89 Aligned_cols=336 Identities=27% Similarity=0.447 Sum_probs=273.1
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
..++..||-+.|+++.|+.|.++|++|+.|.++|||.++..+. ...+.+|.++|...-|..+...+++.+.||.+.+|
T Consensus 137 l~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W 216 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVW 216 (893)
T ss_pred EeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEE
Confidence 4567789999999999999999999999999999999987665 45678999999999999999999999999999999
Q ss_pred eCCC-----------------------CCc-----c-----cccccCcccceEEEEeeee--------------------
Q 010816 178 DPQT-----------------------GKP-----S-----GNPLSGHKKWITGISWEPV-------------------- 204 (500)
Q Consensus 178 d~~~-----------------------~~~-----~-----~~~~~~~~~~v~~~~~~~~-------------------- 204 (500)
.... ++. . +..+......|++.+|++.
T Consensus 217 ~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~ 296 (893)
T KOG0291|consen 217 TCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD 296 (893)
T ss_pred EecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC
Confidence 7541 100 0 0001111133444444331
Q ss_pred -----------------ecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEE
Q 010816 205 -----------------HLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKV 265 (500)
Q Consensus 205 -----------------~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~l 265 (500)
..+..+..++.|+. -|.+-||+......+....+|...++|++++|||. ++||+.||.|+|
T Consensus 297 f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKv 376 (893)
T KOG0291|consen 297 FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKV 376 (893)
T ss_pred ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEE
Confidence 11223344554443 37888888888888888889999999999999984 788999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||...|-+..++..|...|..+.++.. +..+++.|-||+|+.||
T Consensus 377 Wn~~SgfC~vTFteHts~Vt~v~f~~~------------------------------------g~~llssSLDGtVRAwD 420 (893)
T KOG0291|consen 377 WNTQSGFCFVTFTEHTSGVTAVQFTAR------------------------------------GNVLLSSSLDGTVRAWD 420 (893)
T ss_pred EeccCceEEEEeccCCCceEEEEEEec------------------------------------CCEEEEeecCCeEEeee
Confidence 999999999999999999999988753 35689999999999999
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 424 (500)
+.............+-...|++..|.|.+++.|+.|. .|.+|++++|+++.++.||++||.++
T Consensus 421 lkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l---------------- 484 (893)
T KOG0291|consen 421 LKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL---------------- 484 (893)
T ss_pred ecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceee----------------
Confidence 8766554443344455678999999999999999986 69999999999999999999999888
Q ss_pred eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|+|.|..||+||+|++||+||+-.. ...++++ +...|++++|+|||+.|++++-||+|.+|+
T Consensus 485 -----------~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~elaVaTldgqItf~d 548 (893)
T KOG0291|consen 485 -----------SFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGKELAVATLDGQITFFD 548 (893)
T ss_pred -----------EEccccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCCeEEEEEecceEEEEE
Confidence 56899999999999999999998553 2334443 567899999999999999999999999997
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=3.3e-39 Score=290.98 Aligned_cols=371 Identities=23% Similarity=0.386 Sum_probs=284.5
Q ss_pred ecccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 96 PVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 96 ~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
..+...-.+.||...|.+++|-|... +++||+.|++|.+|+-..-+-...+..|..-|.|+.|+|||.++++++.||++
T Consensus 135 DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki 214 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKI 214 (603)
T ss_pred cCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccE
Confidence 34455677899999999999999876 69999999999999754444445567899999999999999999999999999
Q ss_pred EEEeCCCCCccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEEEEEe
Q 010816 175 QCWDPQTGKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKW 248 (500)
Q Consensus 175 ~~wd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~~~~~ 248 (500)
.+||-.+|+.+... -.+|++.|.+++|+| +..+|+++|.|.++||||+.+.+++.++.-. ...|-|+ |
T Consensus 215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsP-----Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l-W 288 (603)
T KOG0318|consen 215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSP-----DSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL-W 288 (603)
T ss_pred EEEcCCCccEEEEecCCCCccccEEEEEECC-----CCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE-E
Confidence 99999999866532 348999999999998 5579999999999999999999998877532 2234444 4
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHHH--HHh---hh
Q 010816 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAA--LER---YN 322 (500)
Q Consensus 249 ~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~ 322 (500)
- ++.|++.+-+|+|.+++...+..++.+.+|...|+++..+++.. +.++..|.....+.......... ... ..
T Consensus 289 q-kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~ 367 (603)
T KOG0318|consen 289 Q-KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIK 367 (603)
T ss_pred e-CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEE
Confidence 4 56799999999999999999999999999999999999998753 34444444322221111100000 001 11
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCC-----------CCCce-------------------eeeccc--------CcEE
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVS-----------KQPKT-------------------RMTGHQ--------QLVN 364 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~-----------~~~~~-------------------~~~~h~--------~~v~ 364 (500)
.+.....+.+++.+.|.++++.+.... .+|.. .+..+. -...
T Consensus 368 ~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s 447 (603)
T KOG0318|consen 368 GMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESS 447 (603)
T ss_pred EEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccc
Confidence 122233356788888889988854211 11110 111111 1256
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 442 (500)
+++++|++..+|.|+.|+.|+||.+..+++. ..+..|.++++.+ ++|||+.
T Consensus 448 ~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~v---------------------------aySpd~~ 500 (603)
T KOG0318|consen 448 AVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDV---------------------------AYSPDGA 500 (603)
T ss_pred eEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEE---------------------------EECCCCc
Confidence 7999999999999999999999999876643 3566788888777 6699999
Q ss_pred EEEEEECCCcEEEEECCCcccccc-ccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 443 LLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+||+|...+.|.+||+.+.+.... +.-|..+|.+++|+|+.+.+||||-|-.|.||..
T Consensus 501 yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 501 YLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred EEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 999999999999999998877443 4449999999999999999999999999999973
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-40 Score=268.75 Aligned_cols=289 Identities=24% Similarity=0.411 Sum_probs=247.8
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc-ccccccCcccceEEE
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGI 199 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~ 199 (500)
-+|||++.|-+||+|...++.+..+++.....|..+...||++.||+|+. ..||+||+++++. ....+.+|++.|.++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaV 89 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAV 89 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEE
Confidence 47999999999999999999999999877889999999999999998874 6899999998876 344678999999999
Q ss_pred EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEe-
Q 010816 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIREL- 277 (500)
Q Consensus 200 ~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~- 277 (500)
.|.. +++.+.+||.||++||||++...|...+ .|.++|+++..+|+. .|++|.++|.|++||+....+...+
T Consensus 90 gF~~-----dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 90 GFQC-----DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEee-----cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 8764 6788999999999999999997766554 577999999998864 6999999999999999987666655
Q ss_pred ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC-----CCC
Q 010816 278 KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS-----KQP 352 (500)
Q Consensus 278 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~-----~~~ 352 (500)
......|.++.+.++ +..++.+...|+.++|++... ..+
T Consensus 164 Pe~~~~i~sl~v~~d------------------------------------gsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPD------------------------------------GSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred CCCCcceeeEEEcCC------------------------------------CcEEEEecCCccEEEEEccCCCccccceE
Confidence 344567888887775 346788888999999997543 235
Q ss_pred ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccc
Q 010816 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC 431 (500)
Q Consensus 353 ~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (500)
..++..|..-+....+|||+++||++|.|.+++||+.++- +.-..+++|...+..-
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc----------------------- 264 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDC----------------------- 264 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEee-----------------------
Confidence 6678899999999999999999999999999999999887 5567789999888876
Q ss_pred ceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE
Q 010816 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW 479 (500)
Q Consensus 432 ~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 479 (500)
+||.||++|++|+.|+.+|+|+++.++.++...||-....+++.
T Consensus 265 ----~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 265 ----AFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ----eeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 56999999999999999999999999999999998776666654
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=284.88 Aligned_cols=287 Identities=30% Similarity=0.512 Sum_probs=251.5
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
++.+.+.||.+.|.|+++.|-.++++||+.|++|+|||+.++....++.||-..|..+++|+-..+|.+++.|+.|+.||
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwD 221 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWD 221 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEe
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG 257 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~ 257 (500)
++..+.++ ...||-..|.+++..|.. +.+++|+.|.++|+||+++...+.++.||..+|.++.+.+ |+.+++|
T Consensus 222 Le~nkvIR-~YhGHlS~V~~L~lhPTl-----dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 222 LEYNKVIR-HYHGHLSGVYCLDLHPTL-----DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred chhhhhHH-HhccccceeEEEeccccc-----eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence 99877654 578999999999887743 5899999999999999999999999999999999998875 6789999
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|++|++||++.|+....
T Consensus 296 S~D~tvrlWDl~agkt~~t------------------------------------------------------------- 314 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTMIT------------------------------------------------------------- 314 (460)
T ss_pred cCCceEEEeeeccCceeEe-------------------------------------------------------------
Confidence 9999999999987764332
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
+..|...|.+++.+|....+|+++.| .|+-|++..|+.+..+.+|+.-++++..
T Consensus 315 ------------------lt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~------- 368 (460)
T KOG0285|consen 315 ------------------LTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSV------- 368 (460)
T ss_pred ------------------eecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeee-------
Confidence 23466678899999999999999988 5999999999999889999998887732
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-----cC---cccCEEEEEEcCCCCEEEEE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-----PG---HADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~---h~~~V~~l~~s~dg~~l~s~ 489 (500)
.+..++++|+..|.+.+||.+++-..+.. +| ....|++.+|...|.+|+||
T Consensus 369 ---------------------nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 369 ---------------------NSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred ---------------------ccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEec
Confidence 24568899999999999999987544322 22 23579999999999999999
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
..|++|++|.
T Consensus 428 eadKtIk~~k 437 (460)
T KOG0285|consen 428 EADKTIKMYK 437 (460)
T ss_pred cCCcceEEEe
Confidence 9999999996
No 19
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.5e-41 Score=291.97 Aligned_cols=280 Identities=29% Similarity=0.575 Sum_probs=239.7
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
.-+|..+.|.|+|++|++|+..|...+|+..+-.--..++.|..+|+++.|+++|..++||+.+|.|++|++.-.. +..
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-Vk~ 174 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-VKI 174 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-hHH
Confidence 3479999999999999999999999999975433333456899999999999999999999999999999986433 222
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVW 266 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lw 266 (500)
....|...|.+++|+|.+ ..|+++|.||+|+|||....+....+.||...|.|++|.|. +.|++||.|+.|++|
T Consensus 175 ~~ahh~eaIRdlafSpnD-----skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlW 249 (464)
T KOG0284|consen 175 IQAHHAEAIRDLAFSPND-----SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLW 249 (464)
T ss_pred hhHhhhhhhheeccCCCC-----ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEee
Confidence 223444899999999843 48999999999999999998888889999999999999985 688999999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|.++|.++.+
T Consensus 250 DprSg~cl~t---------------------------------------------------------------------- 259 (464)
T KOG0284|consen 250 DPRSGSCLAT---------------------------------------------------------------------- 259 (464)
T ss_pred cCCCcchhhh----------------------------------------------------------------------
Confidence 9988765433
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
+.+|+..|..+.|+|++++|+++|.|..++++|+++-+.+.++++|+..+.++
T Consensus 260 ---------lh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~------------------ 312 (464)
T KOG0284|consen 260 ---------LHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSL------------------ 312 (464)
T ss_pred ---------hhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheee------------------
Confidence 33567778999999999999999999999999999888899999999999887
Q ss_pred eccccceeeEEcCC-CCEEEEEECCCcEEEEECCCccccc-cccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 427 DMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKLKQ-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 427 ~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+|- ..+|.+|+.||.|..|.+...+.+. .-.+|...|++++|+|=|..|++|+.|.++++|.
T Consensus 313 ---------~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 313 ---------TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ---------ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 45664 4688999999999999988555443 3457999999999999999999999999999995
No 20
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=9.5e-40 Score=308.91 Aligned_cols=275 Identities=28% Similarity=0.468 Sum_probs=238.0
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (500)
Q Consensus 145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i 224 (500)
++..-...+.|..|++|+.+||.|-.|..|++|.+...+... +++. .+. ..+=+++.|-.+.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~--lk~~-------~~l--------~~~d~~sad~~~~~ 435 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK--LKDA-------SDL--------SNIDTESADVDVDM 435 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhcc--ccch-------hhh--------ccccccccchhhhh
Confidence 343445679999999999999999999999999987543211 1111 110 12223455556777
Q ss_pred EECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCC
Q 010816 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (500)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (500)
-|.........+.||.++|....|+|+. .|++++.|+++|+|.+.+-.++-.+++|..+|..+.|+|-
T Consensus 436 ~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~----------- 504 (707)
T KOG0263|consen 436 LDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR----------- 504 (707)
T ss_pred ccccCCceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-----------
Confidence 7777777777799999999999999986 6889999999999999999999999999999999998874
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (500)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~ 383 (500)
+-+|+++|.|++.++|.... ..+...+.+|-..|.|+.|+|+..++|+||.|.+
T Consensus 505 -------------------------GyYFatas~D~tArLWs~d~-~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t 558 (707)
T KOG0263|consen 505 -------------------------GYYFATASHDQTARLWSTDH-NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT 558 (707)
T ss_pred -------------------------ceEEEecCCCceeeeeeccc-CCchhhhcccccccceEEECCcccccccCCCCce
Confidence 34799999999999998654 4567788999999999999999999999999999
Q ss_pred EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
||+||+.+|..++.|.||.++|.++ +|||+|++|++|+.||.|++||+.+++.
T Consensus 559 VRlWDv~~G~~VRiF~GH~~~V~al---------------------------~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 559 VRLWDVSTGNSVRIFTGHKGPVTAL---------------------------AFSPCGRYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred EEEEEcCCCcEEEEecCCCCceEEE---------------------------EEcCCCceEeecccCCcEEEEEcCCCcc
Confidence 9999999999999999999999988 5699999999999999999999999999
Q ss_pred cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+..+.+|.+.|+++.||.||..||+||.|++|++|+.
T Consensus 612 v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 612 VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 9999999999999999999999999999999999973
No 21
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.3e-40 Score=285.26 Aligned_cols=268 Identities=31% Similarity=0.580 Sum_probs=228.0
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
..+.|.|+++ |...+++|..|++|+|||..+-.++..+.||++.|.|+.| +.+.+++||.|.+|++||+++|+++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence 4678999987 5667999999999999999999999999999999999999 55699999999999999999999875
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccEEEEEeCCCCeEEEEeCCCeE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i 263 (500)
.+.+|...|..+.|+. +.++++|.|.++.+||+.... +...+.||...|..+.|+.. +|++++.|.+|
T Consensus 272 -tlihHceaVLhlrf~n-------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k-yIVsASgDRTi 342 (499)
T KOG0281|consen 272 -TLIHHCEAVLHLRFSN-------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK-YIVSASGDRTI 342 (499)
T ss_pred -HHhhhcceeEEEEEeC-------CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc-eEEEecCCceE
Confidence 4678999999988753 589999999999999997653 34457799999999999854 89999999999
Q ss_pred EEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (500)
Q Consensus 264 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~ 343 (500)
++|+..++..++++.+|
T Consensus 343 kvW~~st~efvRtl~gH--------------------------------------------------------------- 359 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGH--------------------------------------------------------------- 359 (499)
T ss_pred EEEeccceeeehhhhcc---------------------------------------------------------------
Confidence 99999887776655544
Q ss_pred EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
+..|.|+.+ .|+++++||.|.+|++||...|.++.+++||+.-|.+++|
T Consensus 360 ----------------kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF------------- 408 (499)
T KOG0281|consen 360 ----------------KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF------------- 408 (499)
T ss_pred ----------------cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheee-------------
Confidence 444444443 5788999999999999999999999999999998888876
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
|.+.+++|+.||+|++||+.++. ++..+..|.++|+.+.| |...+++++.|.+
T Consensus 409 ----------------d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddt 470 (499)
T KOG0281|consen 409 ----------------DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDT 470 (499)
T ss_pred ----------------cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCe
Confidence 66788999999999999987643 34556779999999999 4578999999999
Q ss_pred EEEec
Q 010816 495 LKLWM 499 (500)
Q Consensus 495 v~iW~ 499 (500)
|.||+
T Consensus 471 ILiWd 475 (499)
T KOG0281|consen 471 ILIWD 475 (499)
T ss_pred EEEEE
Confidence 99997
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-38 Score=261.15 Aligned_cols=266 Identities=26% Similarity=0.429 Sum_probs=219.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCcc
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHT 240 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~ 240 (500)
-+|+|+|+|.+||+|...+|.+.+. +......|+.+...| +. ++++++....||+||+++.+ .+.++.+|+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-iqh~dsqVNrLeiTp-----dk-~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-IQHPDSQVNRLEITP-----DK-KDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-EecCccceeeEEEcC-----Cc-chhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 4789999999999999999988653 444456677776554 33 44555566899999998765 588899999
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
..|+++.|..+| .+++|+.||++||||++...+.+.++ +..+|+++.++|.
T Consensus 84 kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpn--------------------------- 135 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPN--------------------------- 135 (311)
T ss_pred CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCC---------------------------
Confidence 999999999887 48999999999999999866555554 5588999988875
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------ 393 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~------ 393 (500)
...|++|..+|.|++||+.........+..-...|.+++..|||.+++.+-.-|..++|++..+.
T Consensus 136 ---------QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 136 ---------QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred ---------cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccce
Confidence 34689999999999999876543333344445679999999999999999999999999987643
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCccc
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHAD 472 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~ 472 (500)
.+..++.|++-+.+. -+|||+++||++|.|.+|+||++... +....+.+|.+
T Consensus 207 P~~k~~ah~~~il~C---------------------------~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r 259 (311)
T KOG0315|consen 207 PVHKFQAHNGHILRC---------------------------LLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR 259 (311)
T ss_pred EhhheecccceEEEE---------------------------EECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc
Confidence 345677777766655 35999999999999999999999887 55567899999
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 473 EVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 473 ~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+.++||.||++|+||+.|+++|+|+
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecc
Confidence 999999999999999999999999997
No 23
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.5e-37 Score=258.16 Aligned_cols=283 Identities=28% Similarity=0.507 Sum_probs=231.4
Q ss_pred ccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc---eeEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT---PMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~---~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~ 176 (500)
+.++||++.|+.++|+|- |..|||++.|..||||+...+. +...+ .+|+..|.+++|+|.|++|++||.|.++.|
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVI 87 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEE
Confidence 457899999999999998 8999999999999999988532 22222 379999999999999999999999999999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEE
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIY 255 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~ 255 (500)
|.-..+ ..+|+.++.||...|-|++|+.+| +|+
T Consensus 88 w~k~~~----------------------------------------------efecv~~lEGHEnEVK~Vaws~sG~~LA 121 (312)
T KOG0645|consen 88 WKKEDG----------------------------------------------EFECVATLEGHENEVKCVAWSASGNYLA 121 (312)
T ss_pred eecCCC----------------------------------------------ceeEEeeeeccccceeEEEEcCCCCEEE
Confidence 953321 234566788999999999999876 689
Q ss_pred EEeCCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 256 TGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
++++|.+|-+|....+ .+...++.|.+.|..+.++|. .+.|
T Consensus 122 TCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt------------------------------------~dlL 165 (312)
T KOG0645|consen 122 TCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT------------------------------------EDLL 165 (312)
T ss_pred EeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC------------------------------------ccee
Confidence 9999999999998754 456778999999999999874 3579
Q ss_pred EEeeCCCeEEEEcCCC--CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 333 VSGSDDFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
+++|.|++|++|+-.. .-.....+.+|...|.+++|+|.|..|++++.|++++||-..+.- -..|..+++.+
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~----~~~~sr~~Y~v-- 239 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL----SGMHSRALYDV-- 239 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc----chhcccceEee--
Confidence 9999999999997542 223467789999999999999999999999999999999865321 12366777776
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc------cc-cccccCcccCEEEEEEcCC-
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ------KL-KQDLPGHADEVFAVDWSPD- 482 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~------~~-~~~~~~h~~~V~~l~~s~d- 482 (500)
+|. ...||+++.|+.|+||..... ++ .+.-..|...|+++.|+|.
T Consensus 240 -------------------------~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~ 292 (312)
T KOG0645|consen 240 -------------------------PWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV 292 (312)
T ss_pred -------------------------eec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC
Confidence 454 568999999999999986542 11 1233458889999999995
Q ss_pred CCEEEEEeCCCcEEEec
Q 010816 483 GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW~ 499 (500)
..+|++||.||.|++|.
T Consensus 293 ~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 293 SNRLASGGDDGIVNFWE 309 (312)
T ss_pred CCceeecCCCceEEEEE
Confidence 67899999999999996
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.4e-38 Score=304.13 Aligned_cols=291 Identities=36% Similarity=0.628 Sum_probs=250.8
Q ss_pred cccCC-cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 103 TIAGH-TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 103 ~~~gh-~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
.+.+| ...|.++.|+|+|+++++++.|+.+++|+..+.. .+..+.+|...|.+++|+|+++++++++.|++|++||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444 8899999999999999999999999999997766 66667899999999999999999999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
.........+.+|...|++++|+|. ++.+++|+.|++|+|||++++++...+.+|...|++++|++++ .|++++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~-----g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPD-----GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCC-----CCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 5443333467899999999999884 3689999999999999999999999999999999999999887 577889
Q ss_pred CCCeEEEEeCCCCeeE--EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 259 QDCTIKVWETTQGKLI--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
.|+.|++||+.++... ..+..+
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~-------------------------------------------------------- 331 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGA-------------------------------------------------------- 331 (456)
T ss_pred CCccEEEEECCCCceeeeecccCC--------------------------------------------------------
Confidence 9999999999887632 111100
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
.... .++++.|+|++.+|++++.|+.+++||+..+.++..+.+|...++++..
T Consensus 332 --------------------~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~------ 384 (456)
T KOG0266|consen 332 --------------------ENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFS------ 384 (456)
T ss_pred --------------------CCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEec------
Confidence 0112 5889999999999999999999999999999999999999876433311
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc-ccCEEEEEEcCCCCEEEEEe--CCC
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASGG--KDR 493 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~~--~D~ 493 (500)
...++++.++++|+.|+.|++||+.++..+..+.+| ...+..++|+|..+.+++++ .|+
T Consensus 385 ------------------~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~ 446 (456)
T KOG0266|consen 385 ------------------PTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDG 446 (456)
T ss_pred ------------------ccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCc
Confidence 023688999999999999999999999999999999 88899999999999999998 799
Q ss_pred cEEEec
Q 010816 494 VLKLWM 499 (500)
Q Consensus 494 ~v~iW~ 499 (500)
.+++|.
T Consensus 447 ~~~~w~ 452 (456)
T KOG0266|consen 447 LIRLWK 452 (456)
T ss_pred eEEEec
Confidence 999996
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.8e-40 Score=292.80 Aligned_cols=294 Identities=29% Similarity=0.508 Sum_probs=247.8
Q ss_pred ecccccccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 96 PVNRCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 96 ~~~~~~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
.+.+...++.||+..|.++.|.| .+.+|++++.|+.|+||++-. +.++.++.+|..+|.+++|+++|..++|+|.|+.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~ 281 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRF 281 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeeccee
Confidence 34456678899999999999999 899999999999999999865 8888999999999999999999999999999999
Q ss_pred EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG- 252 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~- 252 (500)
|++||.++|++.... | ....++|+.|.|++
T Consensus 282 lKlwDtETG~~~~~f---~----------------------------------------------~~~~~~cvkf~pd~~ 312 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRF---H----------------------------------------------LDKVPTCVKFHPDNQ 312 (503)
T ss_pred eeeeccccceEEEEE---e----------------------------------------------cCCCceeeecCCCCC
Confidence 999999988753210 0 01234667777765
Q ss_pred -eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 253 -~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
.+++|+.|+.|+.||.++++.++++..|-..|..+.+-+. +.+
T Consensus 313 n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~------------------------------------g~r 356 (503)
T KOG0282|consen 313 NIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDE------------------------------------GRR 356 (503)
T ss_pred cEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccC------------------------------------Cce
Confidence 6889999999999999999999988888888888877654 457
Q ss_pred EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---ceEEEEeCCcccEEEE
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQI 408 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~---~~~~~~~~h~~~v~~~ 408 (500)
+++.++|+++++|+.+..-........+.-...++..+|+++++++-+.|+.|.++..... .....|+||..+-+.+
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~ 436 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC 436 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCcee
Confidence 9999999999999987655444444444455778999999999999999999999986542 2245678888776665
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCC-CEEE
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVA 487 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~ 487 (500)
+. .|||||++|++|+.||.+.+||.++.+++..++.|...+..+.|+|.. ..+|
T Consensus 437 ~v-------------------------~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 437 QV-------------------------DFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred eE-------------------------EEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 43 689999999999999999999999999999999999999999999974 5799
Q ss_pred EEeCCCcEEEec
Q 010816 488 SGGKDRVLKLWM 499 (500)
Q Consensus 488 s~~~D~~v~iW~ 499 (500)
|||.||.|++|+
T Consensus 492 t~~w~G~Ikiwd 503 (503)
T KOG0282|consen 492 TCGWDGLIKIWD 503 (503)
T ss_pred ecccCceeEecC
Confidence 999999999996
No 26
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.9e-38 Score=278.53 Aligned_cols=288 Identities=28% Similarity=0.518 Sum_probs=249.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
...|++++|+.+|..||+|+.||.++||+... ..+..+..|.++|.++.|+.+|.+|++++.|+++.+||..+|....
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G-~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q- 312 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDG-NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ- 312 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCc-hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE-
Confidence 36799999999999999999999999999754 4455677899999999999999999999999999999998886543
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw 266 (500)
.+.-|..+-..+.|.. ...|++++.|+.|+++.+....++.++.||...|.++.|++.+ .|++++.|++++||
T Consensus 313 ~f~~~s~~~lDVdW~~------~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS------NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIW 386 (524)
T ss_pred eeeeccCCccceEEec------CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEee
Confidence 4556666656778864 2479999999999999999999999999999999999999877 57889999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
...++.....+..|...|..+.++|........ ..+..+++++.|++|++||+
T Consensus 387 s~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~---------------------------~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 387 SMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNP---------------------------NMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred ecCCCcchhhhhhhccceeeEeecCCCCccCCC---------------------------cCCceEEEeecCCeEEEEEc
Confidence 999888999999999999999999875432211 12457899999999999997
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
... .+...+..|+.+|.+|+|+|+|+++|+|+.||.|.+|+.+++++++.+.+..+ |..+
T Consensus 440 ~~g-v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~-Ifel------------------ 499 (524)
T KOG0273|consen 440 ESG-VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG-IFEL------------------ 499 (524)
T ss_pred cCC-ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe-EEEE------------------
Confidence 654 45677889999999999999999999999999999999999999988876543 5444
Q ss_pred eccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.|+.+|..|..+-.|+.+.+.|++
T Consensus 500 ---------~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 500 ---------CWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred ---------EEcCCCCEEEEEecCCCceEEEec
Confidence 678899999999999999999875
No 27
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=278.66 Aligned_cols=289 Identities=27% Similarity=0.421 Sum_probs=233.2
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
.+.+..|++.|+-+.||++|++|||++.|.+..||++..... .+++.+|..+|.-+.||||.++|++|+.|..+.+|
T Consensus 217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw 296 (519)
T KOG0293|consen 217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW 296 (519)
T ss_pred hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence 356789999999999999999999999999999998764433 56788999999999999999999999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-cccEEEEEeCCCC-eEE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIY 255 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~ 255 (500)
|+.+|........++...+.+.+|.| ++.+|++|+.|+++..||+.... .....+- ...|.+++..+|| .++
T Consensus 297 Dv~tgd~~~~y~~~~~~S~~sc~W~p-----Dg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl 370 (519)
T KOG0293|consen 297 DVDTGDLRHLYPSGLGFSVSSCAWCP-----DGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVL 370 (519)
T ss_pred cCCcchhhhhcccCcCCCcceeEEcc-----CCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEE
Confidence 99999876555556668889999998 45689999999999999986432 2222222 2346777777776 466
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+.+.|..|++++..+....
T Consensus 371 ~v~~d~~i~l~~~e~~~dr------------------------------------------------------------- 389 (519)
T KOG0293|consen 371 LVTVDKKIRLYNREARVDR------------------------------------------------------------- 389 (519)
T ss_pred EEecccceeeechhhhhhh-------------------------------------------------------------
Confidence 6667777777765431100
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
.+..-...|+++++|.||+++.+.-.+..+.+||++..+++..+.||+..-+-++. |
T Consensus 390 -------------------~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS----C 446 (519)
T KOG0293|consen 390 -------------------GLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS----C 446 (519)
T ss_pred -------------------ccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe----c
Confidence 01112346899999999999999999999999999999999999999877555532 1
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCC-CEEEEEeCCCc
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG-EKVASGGKDRV 494 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~s~~~D~~ 494 (500)
+- -.+..++|+||.|+.|+||+..+++++..++||...|++|+|+|.. ..+||||+||+
T Consensus 447 Fg--------------------g~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 447 FG--------------------GGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred cC--------------------CCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 10 1355799999999999999999999999999999999999999975 45799999999
Q ss_pred EEEec
Q 010816 495 LKLWM 499 (500)
Q Consensus 495 v~iW~ 499 (500)
||||-
T Consensus 507 IRIWg 511 (519)
T KOG0293|consen 507 IRIWG 511 (519)
T ss_pred EEEec
Confidence 99994
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=260.03 Aligned_cols=259 Identities=27% Similarity=0.461 Sum_probs=211.1
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
...+.+.||.-.|..+..++||++.++++.|+++++||+.++++...+.||...|.+++|++|...++||+.|.+|++||
T Consensus 54 ~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 54 VPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred ceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG 257 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~ 257 (500)
...+-.....-.++..+|+++.|+|.. ....++++|+|++||+||+++.+....+.||+..++.++++|||. .++|
T Consensus 134 t~g~ck~t~~~~~~~~WVscvrfsP~~---~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 134 TLGVCKYTIHEDSHREWVSCVRFSPNE---SNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred ecccEEEEEecCCCcCcEEEEEEcCCC---CCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 865432222223348999999999854 335899999999999999999999999999999999999999996 5668
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.||.+.+||+..++.+..+
T Consensus 211 gkdg~~~LwdL~~~k~lysl------------------------------------------------------------ 230 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSL------------------------------------------------------------ 230 (315)
T ss_pred CCCceEEEEEccCCceeEec------------------------------------------------------------
Confidence 99999999999877654322
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
+|...|++++|+|+...|+.+. +..|+|||+.++.++..++-....- +.+....
T Consensus 231 --------------------~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~---- 284 (315)
T KOG0279|consen 231 --------------------EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP-SSKAGDP---- 284 (315)
T ss_pred --------------------cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc-ccccCCc----
Confidence 3455689999999988887664 4569999999998877665321110 0000000
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.-..++|+++|+.|++|-.|+.|++|.+.
T Consensus 285 -------------~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 285 -------------ICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred -------------EEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 11235899999999999999999999864
No 29
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.7e-36 Score=279.40 Aligned_cols=286 Identities=43% Similarity=0.747 Sum_probs=247.1
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.++.+|.++|.+++|+|++++|++++.||.+++|++.++.....+..|...+.++.|+|++++|++++.|+.|++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 45779999999999999999999999999999999998888888889999999999999999999999999999999987
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD 260 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d 260 (500)
++... .+..|...+.++.|.+. ...+++++.|+.+++||+++++....+..|...+.++.|++++. +++++.|
T Consensus 83 ~~~~~-~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 83 GECVR-TLTGHTSYVSSVAFSPD-----GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred ccceE-EEeccCCcEEEEEEcCC-----CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 65433 45678888999998873 34667777799999999999888888889999999999999765 4455559
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
+.|++||+++++.+..
T Consensus 157 ~~i~i~d~~~~~~~~~---------------------------------------------------------------- 172 (289)
T cd00200 157 GTIKLWDLRTGKCVAT---------------------------------------------------------------- 172 (289)
T ss_pred CcEEEEEcccccccee----------------------------------------------------------------
Confidence 9999999865432221
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
+..|...+.+++|+|+++.+++++.|+.|++||..+++.+..+..|..++.++
T Consensus 173 ---------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~------------ 225 (289)
T cd00200 173 ---------------LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV------------ 225 (289)
T ss_pred ---------------EecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEE------------
Confidence 12344568899999999999999999999999999999888888888777766
Q ss_pred CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+|++.++++++.|+.|++||+.+++....+.+|...|.+++|+|+++.|++++.|+.|++|+
T Consensus 226 ---------------~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 226 ---------------AFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---------------EEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 5688888999998899999999999888888889999999999999999999999999999996
No 30
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4e-37 Score=250.46 Aligned_cols=284 Identities=24% Similarity=0.387 Sum_probs=243.1
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
..+.+|.++|.++.|+-||++.+|++.|.+|++|+...+..+.+..+|...|..++.+.|...+++|+.|..+.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
|+..+ .+.+|.+.|+.+.|+. ....+++||.|.++++||.+.. ++++.+......|.++..+. ..|++|+.
T Consensus 91 Gkv~R-r~rgH~aqVNtV~fNe-----esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS~ 163 (307)
T KOG0316|consen 91 GKVDR-RFRGHLAQVNTVRFNE-----ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGSV 163 (307)
T ss_pred Ceeee-ecccccceeeEEEecC-----cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeecc
Confidence 98764 5899999999999864 4568999999999999999764 56777777777888887763 46888999
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
||++|.||++.|+....
T Consensus 164 DGtvRtydiR~G~l~sD--------------------------------------------------------------- 180 (307)
T KOG0316|consen 164 DGTVRTYDIRKGTLSSD--------------------------------------------------------------- 180 (307)
T ss_pred CCcEEEEEeecceeehh---------------------------------------------------------------
Confidence 99999999887653211
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
. -..+|+|++|++||+....++.|+++++.|-++|+++..++||...-+.+..
T Consensus 181 ----------------y--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc--------- 233 (307)
T KOG0316|consen 181 ----------------Y--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC--------- 233 (307)
T ss_pred ----------------h--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee---------
Confidence 0 1235999999999999999999999999999999999999999988777643
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC-EEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.++.....+++||.||.|++||+.....+..++.|... |.+++++|.-..|.++..- .+..|
T Consensus 234 ----------------~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 234 ----------------CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFW 296 (307)
T ss_pred ----------------eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceece
Confidence 23556678999999999999999998888888877765 7899999998878777653 35556
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
.
T Consensus 297 ~ 297 (307)
T KOG0316|consen 297 Y 297 (307)
T ss_pred e
Confidence 4
No 31
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.6e-36 Score=284.47 Aligned_cols=352 Identities=26% Similarity=0.418 Sum_probs=280.2
Q ss_pred EEEEeecceEeEEecc--cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC
Q 010816 83 SIVYQPQAVFRIRPVN--RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA 160 (500)
Q Consensus 83 ~~~~~~~~~~~~~~~~--~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 160 (500)
.+.|... ..+++... ...-++.||..+|+++.|+..|.+||+||.|+.|.+||+-...-++.+.||...|+..-|..
T Consensus 81 AVGYaDG-sVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~ 159 (888)
T KOG0306|consen 81 AVGYADG-SVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN 159 (888)
T ss_pred EEEecCc-eEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC
Confidence 4555433 34555443 44567889999999999999999999999999999999999888999999999999999988
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcccc-----------------------------------------------------
Q 010816 161 DGKHLVSGSKAGELQCWDPQTGKPSGN----------------------------------------------------- 187 (500)
Q Consensus 161 ~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------------------------------------------- 187 (500)
+.+.|++.|.|+.|++||+++..+...
T Consensus 160 ~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 160 GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeecccee
Confidence 788999999999999999754221100
Q ss_pred ---------------------------------------------------cccC------------------------c
Q 010816 188 ---------------------------------------------------PLSG------------------------H 192 (500)
Q Consensus 188 ---------------------------------------------------~~~~------------------------~ 192 (500)
...+ -
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 0000 0
Q ss_pred ccceEEEEeeee--------------------ecC----C-----------------------CCceEEEEeCCCcEEEE
Q 010816 193 KKWITGISWEPV--------------------HLN----A-----------------------PCRRFVSASKDGDARIW 225 (500)
Q Consensus 193 ~~~v~~~~~~~~--------------------~~~----~-----------------------~~~~~~s~s~dg~v~iw 225 (500)
...+.++.|-|. ... + ....++..+..+++++|
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiW 399 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIW 399 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEE
Confidence 011122222211 000 0 01123344556899999
Q ss_pred ECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816 226 DVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (500)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 304 (500)
+..+.+|+.++... .+.+..|.|. .++++|...|.+.+||+.....+.+++.|...+.+++..|+
T Consensus 400 n~~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD------------ 465 (888)
T KOG0306|consen 400 NRDTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPD------------ 465 (888)
T ss_pred EccCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCC------------
Confidence 99999999988543 7788888764 57899999999999999999999889999999999998876
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC----Cce-------eeecccCcEEEEEECCCCC
Q 010816 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ----PKT-------RMTGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~----~~~-------~~~~h~~~v~~l~~sp~g~ 373 (500)
+..+++||.|.+|++||...... ... +...-++.|.|+++||||+
T Consensus 466 ------------------------~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 466 ------------------------NKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred ------------------------CCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 34689999999999998532111 111 1223457799999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (500)
Q Consensus 374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v 453 (500)
+||.+-.|.+|++|-+.+.+..-.+-||.-||.++. .|||+.++++||.|.+|
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smD---------------------------IS~DSklivTgSADKnV 574 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMD---------------------------ISPDSKLIVTGSADKNV 574 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEe---------------------------ccCCcCeEEeccCCCce
Confidence 999999999999999999999999999999999884 48999999999999999
Q ss_pred EEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
++|-+.-|.+.+.+-+|.+.|.+|.|-|+...+.++|.|+.|+-|+|
T Consensus 575 KiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 575 KIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG 621 (888)
T ss_pred EEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeech
Confidence 99999999999999999999999999999999999999999999975
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.5e-38 Score=295.72 Aligned_cols=278 Identities=29% Similarity=0.516 Sum_probs=234.4
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.++.-....+.|..|++|+++||.|-.|..|++|.+...+ +..+++ ... ...+=+.+.|-.+..-|..+
T Consensus 372 YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~-~~~---------l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LKKLKD-ASD---------LSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhh-hccccc-hhh---------hccccccccchhhhhccccC
Confidence 3444445679999999999999999999999999987542 222221 111 11222344444455666554
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
+... ..+.||.++|.+.+|.|. .+.++++|.|+++|+|.+.+..++...+||..+|.++.|+|.| +++|++.|
T Consensus 441 ~~~~-~~L~GH~GPVyg~sFsPd-----~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D 514 (707)
T KOG0263|consen 441 SGTS-RTLYGHSGPVYGCSFSPD-----RRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHD 514 (707)
T ss_pred Ccee-EEeecCCCceeeeeeccc-----ccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCC
Confidence 4332 348899999999999884 4689999999999999999999999999999999999999988 48899999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
++-++|.......++.+.+|-..|.|+.++|+ ..++++||.|.+
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPN------------------------------------s~Y~aTGSsD~t 558 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPN------------------------------------SNYVATGSSDRT 558 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCc------------------------------------ccccccCCCCce
Confidence 99999999988999999999999999999986 357899999999
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
+++||...+ .....+.||.++|.+|+|||+|++||+|+.||.|.+||+.+|+.+..+++|++.|+++
T Consensus 559 VRlWDv~~G-~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~Sl------------ 625 (707)
T KOG0263|consen 559 VRLWDVSTG-NSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSL------------ 625 (707)
T ss_pred EEEEEcCCC-cEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEE------------
Confidence 999998754 3467789999999999999999999999999999999999999999999999999988
Q ss_pred CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
.||.+|..||+|+.|++|++||+..
T Consensus 626 ---------------sFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 626 ---------------SFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ---------------EEecCCCEEEecCCCCeEEEEEchh
Confidence 4589999999999999999999865
No 33
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.4e-35 Score=275.78 Aligned_cols=322 Identities=22% Similarity=0.434 Sum_probs=264.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCCccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSG 186 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~ 186 (500)
...|++.+||+..+.||+|-..|...+|++.....++.+.--..+|..++|+..|+.||.|+.. |.+-+|++++...+.
T Consensus 265 ~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl 344 (893)
T KOG0291|consen 265 SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL 344 (893)
T ss_pred ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee
Confidence 4789999999999999999999999999999999999988888899999999999999987764 899999998765443
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~l 265 (500)
..++|...+++++++| ++.++++|+.||.|||||...+-|..+|..|+..|+.+.|...+ .+++++-||+||.
T Consensus 345 -KQQgH~~~i~~l~YSp-----Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 345 -KQQGHSDRITSLAYSP-----DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRA 418 (893)
T ss_pred -eccccccceeeEEECC-----CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEe
Confidence 3578999999999887 66799999999999999999999999999999999999998766 5889999999999
Q ss_pred EeCCCCeeEEEeecCCc-eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC-CeEEE
Q 010816 266 WETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFL 343 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-~~v~~ 343 (500)
||+...+..+++..... ...+++..|. ++.+.+|+.| ..|++
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~s------------------------------------GelV~AG~~d~F~Ifv 462 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPS------------------------------------GELVCAGAQDSFEIFV 462 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCC------------------------------------CCEEEeeccceEEEEE
Confidence 99999998888865432 3444555443 3456666665 46999
Q ss_pred EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (500)
Q Consensus 344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 422 (500)
|++..+ +....+.||+++|.+++|+|+|..||+||+|.+||+||+-.. ..+.++. +...+
T Consensus 463 WS~qTG-qllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdv----------------- 523 (893)
T KOG0291|consen 463 WSVQTG-QLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDV----------------- 523 (893)
T ss_pred EEeecC-eeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEe-eccce-----------------
Confidence 998765 345678999999999999999999999999999999997543 2222222 11222
Q ss_pred eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC--------------------cccCEEEEEEcCC
Q 010816 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--------------------HADEVFAVDWSPD 482 (500)
Q Consensus 423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--------------------h~~~V~~l~~s~d 482 (500)
..++|+|+|+.||++..||.|.+||.+....+..+.| -....+.+++|+|
T Consensus 524 ----------l~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD 593 (893)
T KOG0291|consen 524 ----------LAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD 593 (893)
T ss_pred ----------eEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC
Confidence 3347899999999999999999999876443322211 1234688999999
Q ss_pred CCEEEEEeCCCcEEEecC
Q 010816 483 GEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW~~ 500 (500)
|+.|.+||..+.|.|++.
T Consensus 594 G~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 594 GKCILAGGESNSICIYDV 611 (893)
T ss_pred CCEEEecCCcccEEEEEC
Confidence 999999999999999863
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4e-35 Score=306.74 Aligned_cols=303 Identities=18% Similarity=0.320 Sum_probs=242.6
Q ss_pred CCcEEEEeCCCCceeEE-----ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC----cccc--cccCcccceE
Q 010816 129 DTTVRLWDLNTQTPMFK-----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK----PSGN--PLSGHKKWIT 197 (500)
Q Consensus 129 d~~i~iwd~~~~~~~~~-----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~----~~~~--~~~~~~~~v~ 197 (500)
+|.+++|+..+...... +..|.+.|.+++|+|+|++||+|+.|++|++||..+.. .... ....+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 67788888765443322 34589999999999999999999999999999975421 1000 0112345678
Q ss_pred EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-C-CeEEEEeCCCeEEEEeCCCCeeEE
Q 010816 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-D-GVIYTGSQDCTIKVWETTQGKLIR 275 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~t~~~dg~i~lwd~~~~~~~~ 275 (500)
++.|.|.. ..++++++.||+|++||+.+++.+..+.+|...|.+++|++ + ..|++|+.|++|++||++++..+.
T Consensus 537 ~l~~~~~~----~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 537 GICWNSYI----KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred eEEeccCC----CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 88887642 35799999999999999999999999999999999999986 4 378999999999999999988887
Q ss_pred EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee
Q 010816 276 ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR 355 (500)
Q Consensus 276 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~ 355 (500)
.+..+ ..+.++.+.+. .+..+++|+.|+.|++||++....+...
T Consensus 613 ~~~~~-~~v~~v~~~~~-----------------------------------~g~~latgs~dg~I~iwD~~~~~~~~~~ 656 (793)
T PLN00181 613 TIKTK-ANICCVQFPSE-----------------------------------SGRSLAFGSADHKVYYYDLRNPKLPLCT 656 (793)
T ss_pred EEecC-CCeEEEEEeCC-----------------------------------CCCEEEEEeCCCeEEEEECCCCCccceE
Confidence 77654 45666665432 2457999999999999998766555667
Q ss_pred eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (500)
Q Consensus 356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 429 (500)
+.+|...|.++.|. ++.+|++++.|++|++||+..+ ..+..+.+|...+..+
T Consensus 657 ~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v--------------------- 714 (793)
T PLN00181 657 MIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFV--------------------- 714 (793)
T ss_pred ecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEE---------------------
Confidence 78999999999997 7889999999999999999743 5677788888776665
Q ss_pred ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc-------------cccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ-------------DLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-------------~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
+|+|++.+|++|+.|+.|++|+........ ....|...|.+++|+|++..|++|+.||.|+
T Consensus 715 ------~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~ 788 (793)
T PLN00181 715 ------GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIK 788 (793)
T ss_pred ------EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEE
Confidence 568999999999999999999976543211 1123556799999999999999999999999
Q ss_pred Eec
Q 010816 497 LWM 499 (500)
Q Consensus 497 iW~ 499 (500)
||+
T Consensus 789 i~~ 791 (793)
T PLN00181 789 ILE 791 (793)
T ss_pred EEe
Confidence 997
No 35
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.5e-36 Score=251.93 Aligned_cols=244 Identities=27% Similarity=0.459 Sum_probs=214.6
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC------ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
++--+..|..++|+|.|+++|.|+.|+...||++.+. +....+.+|++.+.|+.|-+| .+|+++|.|.++.+|
T Consensus 93 ipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalW 171 (343)
T KOG0286|consen 93 IPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALW 171 (343)
T ss_pred EecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEE
Confidence 3445778999999999999999999999999999854 233468899999999999875 589999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT 256 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t 256 (500)
|+++|+... .+.+|...|.+++..|. +.+.|++|+-|+..++||++.+.|++.|.+|...|.++.|.|+|. +++
T Consensus 172 Die~g~~~~-~f~GH~gDV~slsl~p~----~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat 246 (343)
T KOG0286|consen 172 DIETGQQTQ-VFHGHTGDVMSLSLSPS----DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT 246 (343)
T ss_pred EcccceEEE-EecCCcccEEEEecCCC----CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeee
Confidence 999998654 57899999999998874 456899999999999999999999999999999999999999985 899
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
|+.|++.|+||++..+.+..+...
T Consensus 247 GSDD~tcRlyDlRaD~~~a~ys~~-------------------------------------------------------- 270 (343)
T KOG0286|consen 247 GSDDATCRLYDLRADQELAVYSHD-------------------------------------------------------- 270 (343)
T ss_pred cCCCceeEEEeecCCcEEeeeccC--------------------------------------------------------
Confidence 999999999999987655433200
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
.-...|++++||..|++|.+|..|.++.+||.-.++.+..+.||++.|.++.
T Consensus 271 ---------------------~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~------- 322 (343)
T KOG0286|consen 271 ---------------------SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG------- 322 (343)
T ss_pred ---------------------cccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE-------
Confidence 0113589999999999999999999999999999999999999999999884
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
.+|||.-+++||+|.++|||.
T Consensus 323 --------------------~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 323 --------------------VSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --------------------ECCCCcEEEecchhHheeecC
Confidence 489999999999999999994
No 36
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-35 Score=282.99 Aligned_cols=306 Identities=24% Similarity=0.418 Sum_probs=252.6
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
-+..|..++|||...++.++-..|.|++||..=+..+..+..|.++|..+.|+|++.+++||+.|-+|++|+..+.++..
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf 87 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF 87 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh
Confidence 46678999999999999999999999999999888888999999999999999999999999999999999999888765
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKV 265 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~l 265 (500)
.+.||-+.|..+.|++..+ .++++|.|.+||||+..+++|+.++.||+..|.|..|.| +..++++|-|.+||+
T Consensus 88 -tL~GHlDYVRt~~FHheyP-----WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV 161 (1202)
T KOG0292|consen 88 -TLLGHLDYVRTVFFHHEYP-----WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV 161 (1202)
T ss_pred -hhccccceeEEeeccCCCc-----eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence 5789999999999987553 799999999999999999999999999999999999998 668999999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||+..-+.. +..+. + +. + .+.+...+.-+-|+.|-.
T Consensus 162 WDisGLRkk-----~~~pg-~--~e--------------------~-----------~~~~~~~~~dLfg~~DaV----- 197 (1202)
T KOG0292|consen 162 WDISGLRKK-----NKAPG-S--LE--------------------D-----------QMRGQQGNSDLFGQTDAV----- 197 (1202)
T ss_pred Eeecchhcc-----CCCCC-C--ch--------------------h-----------hhhccccchhhcCCcCee-----
Confidence 997532211 00000 0 00 0 000000000011222322
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
.+..+.||...|+.++|+|.-.+|++|+.|+.|++|....-+. +.+++||.+.|.++-
T Consensus 198 ------VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvl-------------- 257 (1202)
T KOG0292|consen 198 ------VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVL-------------- 257 (1202)
T ss_pred ------eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEE--------------
Confidence 2356789999999999999999999999999999999876543 678899999998874
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
|+|...+++|.|.|++|++||+...+.+++++-..++-|.++-+|..+.++.|.+.|.+
T Consensus 258 -------------fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 258 -------------FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred -------------ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeecCCceE
Confidence 48999999999999999999999999999887777899999999999877776666643
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-34 Score=267.49 Aligned_cols=333 Identities=25% Similarity=0.371 Sum_probs=245.4
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
-...|+|+.-+|+..+||.|-.||.|+||+..++..+.++.||...|+++.|...|..|+|||.|+.|.+||+-...- .
T Consensus 64 ~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G-l 142 (888)
T KOG0306|consen 64 KKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG-L 142 (888)
T ss_pred ccceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee-e
Confidence 346899999999999999999999999999999989999999999999999999999999999999999999864322 2
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-----------------------------
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS----------------------------- 237 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~----------------------------- 237 (500)
..+.||++.++..-|.. ....+++.|.|+.+++||+.+..|..+.-
T Consensus 143 ~rL~GHkd~iT~~~F~~-----~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~ 217 (888)
T KOG0306|consen 143 FRLRGHKDSITQALFLN-----GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE 217 (888)
T ss_pred EEeecchHHHhHHhccC-----CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence 35778887776655432 22345555666666666655444433322
Q ss_pred --------------------------------------------------------------------------------
Q 010816 238 -------------------------------------------------------------------------------- 237 (500)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (500)
T Consensus 218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~ 297 (888)
T KOG0306|consen 218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE 297 (888)
T ss_pred eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence
Q ss_pred -------------------------------------------------------------------------CccccEE
Q 010816 238 -------------------------------------------------------------------------GHTLAVT 244 (500)
Q Consensus 238 -------------------------------------------------------------------------~h~~~v~ 244 (500)
||...|.
T Consensus 298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR 377 (888)
T KOG0306|consen 298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR 377 (888)
T ss_pred ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence 3444455
Q ss_pred EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
+++++.+..++..+..+++++|+..+.++++++... .+.+..+-|
T Consensus 378 sl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~--y~l~~~Fvp--------------------------------- 422 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCG--YILASKFVP--------------------------------- 422 (888)
T ss_pred EEEeecCceeeeecCCCcEEEEEccCcceeEEeccc--cEEEEEecC---------------------------------
Confidence 555555555444455556666666666666655432 333333322
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
....++.|...|.+.++|+.... ......+|.+.+++++.+||+..+++||.|.+|++||..- +....|....
T Consensus 423 ---gd~~Iv~G~k~Gel~vfdlaS~~-l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l---~~~~~gt~~k 495 (888)
T KOG0306|consen 423 ---GDRYIVLGTKNGELQVFDLASAS-LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKL---VVSVPGTQKK 495 (888)
T ss_pred ---CCceEEEeccCCceEEEEeehhh-hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEE---EeccCcccce
Confidence 24578999999999999986543 3445569999999999999999999999999999998631 1111122222
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
+.++.- .........+..+++||||++||.+=.|++|+||-+.+.+..-.+=||.-+|.+++.|||++
T Consensus 496 ~lsl~~------------~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk 563 (888)
T KOG0306|consen 496 VLSLKH------------TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK 563 (888)
T ss_pred eeeecc------------ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC
Confidence 222111 11223344455668899999999999999999999999888888889999999999999999
Q ss_pred EEEEEeCCCcEEEec
Q 010816 485 KVASGGKDRVLKLWM 499 (500)
Q Consensus 485 ~l~s~~~D~~v~iW~ 499 (500)
.++|||+|+.|++|-
T Consensus 564 livTgSADKnVKiWG 578 (888)
T KOG0306|consen 564 LIVTGSADKNVKIWG 578 (888)
T ss_pred eEEeccCCCceEEec
Confidence 999999999999994
No 38
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-34 Score=266.64 Aligned_cols=284 Identities=23% Similarity=0.379 Sum_probs=238.2
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+..|++.|.++.|||...+++++-..|.|.|||.+++..+..+.--+-+|.+..|-+--+.+++|+.|..|++|+
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfn---- 83 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFN---- 83 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEe----
Confidence 4456899999999999999999999999999999999888777766666777766655545555555555555554
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDC 261 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg 261 (500)
..+...+..|.+|...|+|++.+|. .++++++.|-
T Consensus 84 --------------------------------------------ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm 119 (794)
T KOG0276|consen 84 --------------------------------------------YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDM 119 (794)
T ss_pred --------------------------------------------cccceeeEEeeccccceeeeeecCCCCeEEecCCcc
Confidence 4455555667788888999888874 4789999999
Q ss_pred eEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 262 TIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 262 ~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
+|++||.... .+.+++.+|.+.|..+++.|.. ++.++++|-|++
T Consensus 120 ~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD-----------------------------------~ntFaS~sLDrT 164 (794)
T KOG0276|consen 120 TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKD-----------------------------------PNTFASASLDRT 164 (794)
T ss_pred EEEEeeccCceeeeeEEcCcceEEEEEEecCCC-----------------------------------ccceeeeecccc
Confidence 9999999876 5678899999999999998852 567999999999
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~--g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
|++|.+.. ..+...+.+|...|+|+.|-+- -.+|++|+.|.+|+|||.++..|+.++.||...|..+
T Consensus 165 VKVWslgs-~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v---------- 233 (794)
T KOG0276|consen 165 VKVWSLGS-PHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV---------- 233 (794)
T ss_pred EEEEEcCC-CCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE----------
Confidence 99999754 3566788999999999999874 4799999999999999999999999999999998877
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
.|+|.=..+++||.||+||||+..+-++...+--..++||+++-.+.+..++.|.+.|.|.+
T Consensus 234 -----------------~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 -----------------FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred -----------------EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 35788889999999999999999988877777666789999999999889999998887765
No 39
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=1.6e-33 Score=294.73 Aligned_cols=297 Identities=20% Similarity=0.384 Sum_probs=234.0
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--------ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCe
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGE 173 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~ 173 (500)
.+.+|.+.|.+++|+|+|++||+|+.|++|+|||.... .+...+. +...|.+++|++. +.+|++++.||+
T Consensus 478 ~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 478 DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 34569999999999999999999999999999997532 1222333 3467999999874 789999999999
Q ss_pred EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CC
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DG 252 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~ 252 (500)
|++||+.+++... .+.+|...|.++.|+|. +...|++|+.|++|++||++++.++..+..+ ..+.++.|.+ ++
T Consensus 557 v~lWd~~~~~~~~-~~~~H~~~V~~l~~~p~----~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g 630 (793)
T PLN00181 557 VQVWDVARSQLVT-EMKEHEKRVWSIDYSSA----DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESG 630 (793)
T ss_pred EEEEECCCCeEEE-EecCCCCCEEEEEEcCC----CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCC
Confidence 9999998876543 46789999999999863 3358999999999999999999888887655 5788999954 34
Q ss_pred -eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 253 -VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 253 -~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
.+++|+.||.|++||+++++ .+..+.+|...|..+.+.. +.
T Consensus 631 ~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-------------------------------------~~ 673 (793)
T PLN00181 631 RSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-------------------------------------SS 673 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-------------------------------------CC
Confidence 68999999999999998765 4667778888888887742 24
Q ss_pred EEEEeeCCCeEEEEcCCCC-----CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-Cccc
Q 010816 331 RLVSGSDDFTMFLWEPAVS-----KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGP 404 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~-----~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~ 404 (500)
.+++++.|++|++||+... ..+...+.+|...+++++|+|++++||+|+.|+.|++|+......+..+.. +...
T Consensus 674 ~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~ 753 (793)
T PLN00181 674 TLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP 753 (793)
T ss_pred EEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCc
Confidence 6899999999999998642 234556789999999999999999999999999999999876654433321 1111
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
+..+. .......+..++|+|++..|++|+.||.|+||++
T Consensus 754 ~~~~~---------------~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 754 VSGLE---------------VDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ccccc---------------cCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 11110 0112233555689999999999999999999986
No 40
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=254.77 Aligned_cols=265 Identities=27% Similarity=0.542 Sum_probs=224.6
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~ 176 (500)
+.+...|.||++.|.+|+|+..|++||+++.|-.+++||..+ ..++..+.+|+..|.++.|-|.|++++|++.|.+|+.
T Consensus 140 g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~ 219 (406)
T KOG0295|consen 140 GELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKA 219 (406)
T ss_pred hhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeE
Confidence 356788999999999999999999999999999999999987 5566677899999999999999999999999999999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEE
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYT 256 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t 256 (500)
|+..+|-++. .+.+|..+|..+. .+.++..+++++.|.++++|-+.+++|...++.|.-+|.|++|.+... ++
T Consensus 220 We~~tg~cv~-t~~~h~ewvr~v~-----v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~-~~ 292 (406)
T KOG0295|consen 220 WECDTGYCVK-TFPGHSEWVRMVR-----VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESS-YP 292 (406)
T ss_pred EecccceeEE-eccCchHhEEEEE-----ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccccc-Cc
Confidence 9999998765 5889999988776 345778999999999999999999999999999999999999987532 11
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
...+ .++. .+....+.++|
T Consensus 293 ~i~~--------at~~-----------------------------------------------------~~~~~~l~s~S 311 (406)
T KOG0295|consen 293 SISE--------ATGS-----------------------------------------------------TNGGQVLGSGS 311 (406)
T ss_pred chhh--------ccCC-----------------------------------------------------CCCccEEEeec
Confidence 1000 0000 00123578888
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
.|++|++||+.... ....+.+|..+|..++|+|.|+||+++.+|+++++||++.+++..++..|...+.++.|
T Consensus 312 rDktIk~wdv~tg~-cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf------ 384 (406)
T KOG0295|consen 312 RDKTIKIWDVSTGM-CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF------ 384 (406)
T ss_pred ccceEEEEeccCCe-EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec------
Confidence 88889999876653 44567899999999999999999999999999999999999999999999999888854
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
..+--++++|+-|.++++|..
T Consensus 385 ---------------------h~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 385 ---------------------HKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ---------------------CCCCceEEeccccceeeeeec
Confidence 445559999999999999964
No 41
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=260.29 Aligned_cols=347 Identities=18% Similarity=0.295 Sum_probs=256.9
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
+.-..-||.+..|-+-.+++++|+.|..|+||+..+.+.+..+..|.+.|.|++.+|...+++|+|.|-+|++||.+.+-
T Consensus 51 feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w 130 (794)
T KOG0276|consen 51 FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW 130 (794)
T ss_pred eeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCce
Confidence 33345689999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCC
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQD 260 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~d 260 (500)
...+.+.||...|.+++|+|.+. ..|++++-|++|++|.+....+..++.||...|.|+.|-+.| +|++|+.|
T Consensus 131 a~~qtfeGH~HyVMqv~fnPkD~----ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 131 ACEQTFEGHEHYVMQVAFNPKDP----NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred eeeeEEcCcceEEEEEEecCCCc----cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 77778999999999999999654 589999999999999999999999999999999999998766 89999999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
.+|++||.++..+++++.+|.+.|..+.++|..+ .+++||.||+
T Consensus 207 ~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lp------------------------------------iiisgsEDGT 250 (794)
T KOG0276|consen 207 LTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELP------------------------------------IIISGSEDGT 250 (794)
T ss_pred ceEEEeecchHHHHHHhhcccccceEEEecCCCc------------------------------------EEEEecCCcc
Confidence 9999999999999999999999999999988642 5899999999
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc-------ccEEEEEeeee
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV-------GPVYQIRFELI 413 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~-------~~v~~~~~~~~ 413 (500)
++||...+-+... .+.-.-..++|++-.+.++.++.|...|.|.+ .+-..++...+.... +.+..+....+
T Consensus 251 vriWhs~Ty~lE~-tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~ 328 (794)
T KOG0276|consen 251 VRIWNSKTYKLEK-TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMDSNGKIIWAVHSEIQAVNLKSV 328 (794)
T ss_pred EEEecCcceehhh-hhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeecCCccEEEEcCceeeeeeceec
Confidence 9999865443322 23334567999999998888999988776654 333333222211111 11221111110
Q ss_pred ee-------ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816 414 YC-------FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486 (500)
Q Consensus 414 ~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 486 (500)
.. -+.|....-+....-....++.+|+|++++.++ ||.-.||..-..+. .+.+.-....|++|..-.
T Consensus 329 ~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~Rn-----K~fG~~~eFvw~~dsne~ 402 (794)
T KOG0276|consen 329 GAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALRN-----KAFGSGLEFVWAADSNEF 402 (794)
T ss_pred cCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehhh-----cccccceeEEEcCCCCeE
Confidence 00 011110000000011123356799999877665 67777775322111 122333456666665555
Q ss_pred EEEeCCCcEEEe
Q 010816 487 ASGGKDRVLKLW 498 (500)
Q Consensus 487 ~s~~~D~~v~iW 498 (500)
+.--.++.|+++
T Consensus 403 avRes~~~vki~ 414 (794)
T KOG0276|consen 403 AVRESNGNVKIF 414 (794)
T ss_pred EEEecCCceEEE
Confidence 555555555554
No 42
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.6e-36 Score=261.35 Aligned_cols=246 Identities=24% Similarity=0.421 Sum_probs=217.1
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+..|..+|.++.|+++|.++++|+.+|.|++|+..-.........|...|++++|+|+...+++||.||+|+|||....
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ 212 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP 212 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC
Confidence 35789999999999999999999999999999997644333222345589999999999999999999999999998876
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg 261 (500)
+... .+.+|.-.|.++.|+|.. ..+++||.|..|++||.+++.|+.++.+|...|..+.|++++ .|+++|.|.
T Consensus 213 kee~-vL~GHgwdVksvdWHP~k-----gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~ 286 (464)
T KOG0284|consen 213 KEER-VLRGHGWDVKSVDWHPTK-----GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQ 286 (464)
T ss_pred chhh-eeccCCCCcceeccCCcc-----ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCc
Confidence 6543 468999999999999853 589999999999999999999999999999999999999875 799999999
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
.+++||+++-+.+..+++|...|.++.++|-. ...|.+|+.||.|
T Consensus 287 ~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~-----------------------------------~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 287 SCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN-----------------------------------ESLFTSGGSDGSV 331 (464)
T ss_pred eEEEEehhHhHHHHHhhcchhhheeecccccc-----------------------------------ccceeeccCCCce
Confidence 99999999878888899999999999998752 4578999999999
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
..|.+...........+|...|.+++|+|-|.+||+|+.|++++.|.-
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred EEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 999987555555566789999999999999999999999999999974
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.2e-35 Score=254.90 Aligned_cols=228 Identities=31% Similarity=0.587 Sum_probs=204.8
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK 272 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~ 272 (500)
.+.|.++++. ...+++|..|.+|+|||.....|+..+.||++.|.|+.|.. ..|++|+.|.+|++||..+|+
T Consensus 197 skgVYClQYD-------D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~-rviisGSSDsTvrvWDv~tge 268 (499)
T KOG0281|consen 197 SKGVYCLQYD-------DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE-RVIVSGSSDSTVRVWDVNTGE 268 (499)
T ss_pred CCceEEEEec-------chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc-eEEEecCCCceEEEEeccCCc
Confidence 4567777763 35799999999999999999999999999999999999974 489999999999999999999
Q ss_pred eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-
Q 010816 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ- 351 (500)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~- 351 (500)
.+.++..|...|..+.++. ..++++|.|.++.+||+.....
T Consensus 269 ~l~tlihHceaVLhlrf~n--------------------------------------g~mvtcSkDrsiaVWdm~sps~i 310 (499)
T KOG0281|consen 269 PLNTLIHHCEAVLHLRFSN--------------------------------------GYMVTCSKDRSIAVWDMASPTDI 310 (499)
T ss_pred hhhHHhhhcceeEEEEEeC--------------------------------------CEEEEecCCceeEEEeccCchHH
Confidence 9999999999998888764 3689999999999999876543
Q ss_pred -CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccc
Q 010816 352 -PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430 (500)
Q Consensus 352 -~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (500)
....+.||...|+.+.|+ .++++++|.|++|++|+..+++++.++.||...|.++++
T Consensus 311 t~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-------------------- 368 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-------------------- 368 (499)
T ss_pred HHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--------------------
Confidence 234578999999999996 559999999999999999999999999999999888744
Q ss_pred cceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 431 ~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+++++||.|.+|++||++.|.+++.+.||.+-|-++.|. .+++++|+-||+|++|+
T Consensus 369 ---------r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWd 426 (499)
T KOG0281|consen 369 ---------RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWD 426 (499)
T ss_pred ---------cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEe
Confidence 78999999999999999999999999999999999999995 58999999999999997
No 44
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=4.3e-33 Score=269.79 Aligned_cols=284 Identities=33% Similarity=0.608 Sum_probs=248.2
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 185 (500)
|...+.+..|+ ..++++++.|++|++||..++..+.. +.||.+.|.+++|..-+.+|++|+.|.++++||..+|.+.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 56678888887 66799999999999999999988877 9999999999999876889999999999999999999886
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~l 265 (500)
. .+.+|...+..+...+ ..+++||.|.+|++|++++++++..+.+|..+|.++..+ .+.+++|+.|++|++
T Consensus 285 ~-~l~gh~stv~~~~~~~-------~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~V 355 (537)
T KOG0274|consen 285 H-SLQGHTSSVRCLTIDP-------FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKV 355 (537)
T ss_pred E-EecCCCceEEEEEccC-------ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEEecCceEEE
Confidence 5 5779999998887544 367889999999999999999999999999999999998 678999999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||..++++++.+.+|..+|.++.+... ..+++|+.|++|++||
T Consensus 356 W~~~~~~cl~sl~gH~~~V~sl~~~~~-------------------------------------~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 356 WDPRTGKCLKSLSGHTGRVYSLIVDSE-------------------------------------NRLLSGSLDTTIKVWD 398 (537)
T ss_pred EEhhhceeeeeecCCcceEEEEEecCc-------------------------------------ceEEeeeeccceEeec
Confidence 999999999999999999999876531 4689999999999999
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCcee
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYC 424 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~ 424 (500)
+.........+.+|...+..+.+ .+++|++++.|++|++||..+++++.++.+ |.+.+..+..
T Consensus 399 l~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~-------------- 462 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALAL-------------- 462 (537)
T ss_pred CCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeec--------------
Confidence 87764566778899988866554 588999999999999999999999999999 5677765522
Q ss_pred eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC
Q 010816 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG 469 (500)
Q Consensus 425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 469 (500)
....+++++.|+++++||++++++.+.+-.
T Consensus 463 ---------------~~~~il~s~~~~~~~l~dl~~~~~~~~l~~ 492 (537)
T KOG0274|consen 463 ---------------GKEEILCSSDDGSVKLWDLRSGTLIRTLLS 492 (537)
T ss_pred ---------------CcceEEEEecCCeeEEEecccCchhhhhhh
Confidence 246789999999999999999988876633
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.7e-35 Score=247.53 Aligned_cols=283 Identities=28% Similarity=0.412 Sum_probs=238.6
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--------cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--------TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--------~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
|...-+-|..|+|||++|++|+.||-|.+||..+++....+ --+.++|.|+.|+.|+..||+|+.||+|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 55666889999999999999999999999999887654332 3478899999999999999999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t 256 (500)
.+.+|.+.+..-.+|...|+++.|+. ++..++++|.|.++|+.-+..++++..++||...|+.+.|.+|| .+++
T Consensus 291 ri~tG~ClRrFdrAHtkGvt~l~FSr-----D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAHTKGVTCLSFSR-----DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEecchHHHHhhhhhccCeeEEEEcc-----CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 99999998877779999999999875 45689999999999999999999999999999999999999987 6999
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecC--CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGH--GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++.||+|++|+..++.++.+++.. ..+|.++..-|. +++.++.
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK-----------------------------------npeh~iV 410 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK-----------------------------------NPEHFIV 410 (508)
T ss_pred ecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC-----------------------------------CCceEEE
Confidence 999999999999999998888643 334555544332 3567888
Q ss_pred eeCCCeEEEEcCCCCCCCceeee-c--ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMT-G--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~-~--h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~ 411 (500)
+...+++++-++.. +....+. | ..+...+.+.||.|.++.+.+.|+.++.|.+.+|++-.++..|+..+..+
T Consensus 411 CNrsntv~imn~qG--QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl--- 485 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQG--QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGL--- 485 (508)
T ss_pred EcCCCeEEEEeccc--eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccccccc---
Confidence 98999999887642 2222221 1 12345667899999999999999999999999999999999888776655
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
+.+|...+||+=+.||.+++|.
T Consensus 486 ------------------------~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 486 ------------------------THHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ------------------------ccCcccchhhhhcccchhhhcC
Confidence 4578999999999999999994
No 46
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-33 Score=231.13 Aligned_cols=280 Identities=23% Similarity=0.431 Sum_probs=225.4
Q ss_pred EEEEEcCC-CCeEE--EE-----eCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCC
Q 010816 112 LSVAFSPD-GRQLA--SG-----SGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 112 ~~~~~sp~-~~~la--t~-----~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~ 180 (500)
.+++|||- .++|| ++ .+.|.+.|-++...+.+..+. .-++.+..|+|+++ .+.+++++.||++++||..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 46789984 23343 33 257889999987544443332 34678999999986 4688899999999999965
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEe
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGS 258 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~ 258 (500)
........++.|+..|.++.|++.. .+.++++|+|++||+|+...++.+.++.||...|....|+|. +.+++++
T Consensus 92 ~~s~Pi~~~kEH~~EV~Svdwn~~~----r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 92 MPSKPIHKFKEHKREVYSVDWNTVR----RRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred CCCcchhHHHhhhhheEEecccccc----ceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 4444445678999999999998854 357899999999999999999999999999999999999874 6899999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|+++++||++.......+..|...+.++.++.- ....+++|+.|
T Consensus 168 gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky-----------------------------------~~~vl~Tg~vd 212 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKY-----------------------------------NHNVLATGGVD 212 (311)
T ss_pred CCceEEEEEecCCCceeEEEeccceeEeeccccc-----------------------------------CCcEEEecCCC
Confidence 9999999998865444447778878888877642 24578999999
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeee
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
+.|+.||++.-+.+...+.+|.-.|+.+.|||. ..+||++++|-++||||...+ .++.++.-|+..+..+.
T Consensus 213 ~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~D------- 285 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLD------- 285 (311)
T ss_pred ceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccc-------
Confidence 999999999989999999999999999999995 578999999999999999854 44566666666665553
Q ss_pred cCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEE
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd 457 (500)
||+ ++.++|+.+.|..++||+
T Consensus 286 --------------------ws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 286 --------------------WSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred --------------------cccccCceeeecccccceeeec
Confidence 332 567999999999999997
No 47
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=237.55 Aligned_cols=315 Identities=19% Similarity=0.336 Sum_probs=248.6
Q ss_pred CCeeeEEEEEEeecceEe----------EEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee
Q 010816 76 VSVEKVLSIVYQPQAVFR----------IRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM 143 (500)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~ 143 (500)
.+...+..+...|...+- +|.. +....++.||++.|+++.|+.||.+||||+.+|.|+||...++...
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceE
Confidence 345566777777643221 1221 2245678999999999999999999999999999999999999887
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
..+..--..+.-+.|+|-+..|+.|+.||.+-.|.+.++.. .+.+.||+.++++-.|.| ++++++++..||+|+
T Consensus 142 ~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~p-----dGKr~~tgy~dgti~ 215 (399)
T KOG0296|consen 142 WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIP-----DGKRILTGYDDGTII 215 (399)
T ss_pred EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccC-----CCceEEEEecCceEE
Confidence 77765667788999999999999999999999999987533 346889999999888776 578999999999999
Q ss_pred EEECCCCeEEEEecCc-cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeec--------CCceEEEEEecCcc
Q 010816 224 IWDVSLRKCVICLSGH-TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--------HGHWVNSLALSTEY 293 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--------~~~~v~~~~~~~~~ 293 (500)
+||+.+++.+..+.+. ...-+++.++..+ .++.|..++.+++-+..+|+.+....+ +...+.++.+.+-
T Consensus 216 ~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~- 294 (399)
T KOG0296|consen 216 VWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS- 294 (399)
T ss_pred EEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc-
Confidence 9999999888776532 3445677777665 467788999999999888887765542 1111111111110
Q ss_pred eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 373 (500)
...-...++|+-||+|.|||..... .+..-.|+..|..+.|-+ ..
T Consensus 295 --------------------------------ss~lpL~A~G~vdG~i~iyD~a~~~--~R~~c~he~~V~~l~w~~-t~ 339 (399)
T KOG0296|consen 295 --------------------------------SSKLPLAACGSVDGTIAIYDLAAST--LRHICEHEDGVTKLKWLN-TD 339 (399)
T ss_pred --------------------------------ccccchhhcccccceEEEEecccch--hheeccCCCceEEEEEcC-cc
Confidence 0011246889999999999976433 345567899999999999 78
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (500)
Q Consensus 374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v 453 (500)
+|++++.||.|+.||.++|+++.++.||..+|..+ +.+|+.++++++|.|++.
T Consensus 340 ~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f---------------------------~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF---------------------------ALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred hheeeccCceEEeeeccccceEEEEecCchheeEE---------------------------EEcCCCcEEEEecCCCeE
Confidence 99999999999999999999999999999999887 568999999999999999
Q ss_pred EEEECC
Q 010816 454 KVWDIR 459 (500)
Q Consensus 454 ~iwd~~ 459 (500)
+||+..
T Consensus 393 ~VF~v~ 398 (399)
T KOG0296|consen 393 LVFEVP 398 (399)
T ss_pred EEEecC
Confidence 999863
No 48
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=4.3e-34 Score=234.80 Aligned_cols=287 Identities=25% Similarity=0.390 Sum_probs=242.1
Q ss_pred cccCCcccEEEEEEcC---CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 103 TIAGHTEAVLSVAFSP---DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp---~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
+..||+.+|..++|+| +|-+|++++.|+.-.+-+-+++.-+-++.||.+.|.+...+.+..+-|+++.|-+-++||.
T Consensus 9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a 88 (334)
T KOG0278|consen 9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA 88 (334)
T ss_pred EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence 4579999999999986 7889999999999999888899888999999999999999998888999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeC-CCCeEEEE
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWG-GDGVIYTG 257 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~-~~~~l~t~ 257 (500)
-+|..+- ...|+..|.+++|.. +..++++|+.+..+||+|++.. .....+.+|+..|..+.|. .|..|+++
T Consensus 89 ~tgdelh--sf~hkhivk~~af~~-----ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 89 VTGDELH--SFEHKHIVKAVAFSQ-----DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhh--hhhhhheeeeEEecc-----cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 9987643 346777888888754 5678999999999999999765 4567789999999999986 46678899
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|++||+||.++|+.++++.. ..+|.++-++++ ..+++-..
T Consensus 162 add~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~d-------------------------------------G~ilTia~ 203 (334)
T KOG0278|consen 162 ADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQD-------------------------------------GRILTIAY 203 (334)
T ss_pred ccCCceEEEEeccCcEEEEEec-CCCCcceeeccC-------------------------------------CCEEEEec
Confidence 9999999999999999988763 345666666554 24666777
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-eCCcccEEEEEeeeeeee
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~ 416 (500)
.+.|.+||...-...+ -..-+..|.+.+.+|+-..+++|+.|+.++.||..+|+.+..+ ++|-++|.+++|
T Consensus 204 gssV~Fwdaksf~~lK--s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF------ 275 (334)
T KOG0278|consen 204 GSSVKFWDAKSFGLLK--SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF------ 275 (334)
T ss_pred CceeEEecccccccee--eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE------
Confidence 7889999975432221 1223466889999999999999999999999999999999886 999999999954
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
+|+|...|+||.||+|+||.+..++.
T Consensus 276 ---------------------SPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 276 ---------------------SPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ---------------------CCCCceeeccCCCceEEEEEecCCCc
Confidence 99999999999999999999876554
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-33 Score=229.63 Aligned_cols=283 Identities=21% Similarity=0.361 Sum_probs=216.6
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+.||..+++.+.++.+|.+|++++.|.++.||-..+++.+-.+.||++.|.|+..+.+.++|++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 36799999999999999999999999999999999899999999999999999999999999999999999999999988
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC---
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ--- 259 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~--- 259 (500)
+++.. |+ -..+|..+.|+.++.++..+.
T Consensus 85 k~la~-------------------------------------~k------------~~~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 85 KQLAT-------------------------------------WK------------TNSPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred cEEEE-------------------------------------ee------------cCCeeEEEeeccCCcEEEEEehhh
Confidence 75321 11 122344555655554443333
Q ss_pred ---CCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 260 ---DCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 260 ---dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
.+.|.++|++... ++..+..+...+....+.+ .+
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~------------------------------------l~ 159 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP------------------------------------LG 159 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc------------------------------------cC
Confidence 3567788876332 2222333333333333322 35
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
+.+++|..||.|..||.+...........|...|+.+.++||..+++++|.|.+-++||..+.++++++.. ..|+++.
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e~PvN~a- 237 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-ERPVNTA- 237 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-cccccce-
Confidence 68999999999999999887766666678889999999999999999999999999999999999888763 3344444
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CC-------------cEEEEECCCccccccccCcccCEE
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DS-------------TLKVWDIRTQKLKQDLPGHADEVF 475 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~-------------~v~iwd~~~~~~~~~~~~h~~~V~ 475 (500)
+++|...+++.|+. +- ..|+|++-..+.+..++||.++|+
T Consensus 238 --------------------------aisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPIN 291 (327)
T KOG0643|consen 238 --------------------------AISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPIN 291 (327)
T ss_pred --------------------------ecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcc
Confidence 34665555554432 21 124455445566778899999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEe
Q 010816 476 AVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 476 ~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+|+|+|||+-.+|||.||.||+.
T Consensus 292 svAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 292 SVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eeEECCCCcccccCCCCceEEEE
Confidence 99999999999999999999985
No 50
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=8.4e-33 Score=234.83 Aligned_cols=321 Identities=23% Similarity=0.386 Sum_probs=244.0
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
.+...+.||.+.|+.++.......+.+++.|.+.+||.++++.++..+.||.+.|.|+.|++.+.++++++.|++..||.
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWK 218 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHH
Confidence 45677899999999999988888999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCccc--ccccCccc--ceEEEEeeeeecCCCCceEEEE--eCCC-cEEEEECCCCeEEEEecCccccEEEEEeCCC
Q 010816 179 PQTGKPSG--NPLSGHKK--WITGISWEPVHLNAPCRRFVSA--SKDG-DARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (500)
Q Consensus 179 ~~~~~~~~--~~~~~~~~--~v~~~~~~~~~~~~~~~~~~s~--s~dg-~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (500)
..-.-... ....+|.. .+..-. .......+ ..|| +| ...+..+.+|...|.+..|-..
T Consensus 219 ~av~~~vP~~~a~~~hSsEeE~e~sD--------e~~~d~d~~~~sD~~ti-------RvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSEEEEEHSD--------EHNRDTDSSEKSDGHTI-------RVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred HhhcCcCCCCCCCCCCCchhhhhccc--------ccccccccccccCCcee-------eeeeeeeeccccceEehhhhcC
Confidence 32111100 00112211 010000 00111111 1222 22 3456678899999999999755
Q ss_pred C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
+ .++++++|.+..+||+.+|..+..+.+|.+..+-++.+|. ..
T Consensus 284 g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt------------------------------------Qr 327 (481)
T KOG0300|consen 284 GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT------------------------------------QR 327 (481)
T ss_pred cceeeeeeccccceeeeeccCceeccccCcchhccccccCCc------------------------------------ce
Confidence 4 6999999999999999999999999999887776665543 34
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEE
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIR 409 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~ 409 (500)
.++++|.|.+.++||.+...+....+.||++.|+++.|..+. .+++|+.|++|++||++.-+ .+.+++. ..+++.+
T Consensus 328 LVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRv- 404 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRV- 404 (481)
T ss_pred EEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeeec-CCcccee-
Confidence 578899999999999987777888899999999999998765 48899999999999987643 2333321 1222222
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc----cccCcccCEEEEEEcCCC--
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ----DLPGHADEVFAVDWSPDG-- 483 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~----~~~~h~~~V~~l~~s~dg-- 483 (500)
+.+..+..+|.--.+..|++||+...++.+ .-.||...|.+++|..+-
T Consensus 405 --------------------------avs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~ 458 (481)
T KOG0300|consen 405 --------------------------AVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPA 458 (481)
T ss_pred --------------------------EeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcc
Confidence 445666678877788899999998766532 346899999999997653
Q ss_pred CEEEEEeCCCcEEEec
Q 010816 484 EKVASGGKDRVLKLWM 499 (500)
Q Consensus 484 ~~l~s~~~D~~v~iW~ 499 (500)
.-|++||-|..+.-|.
T Consensus 459 cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 459 CNLFTCGFDRMVAGWK 474 (481)
T ss_pred cccccccccceeeeeE
Confidence 4689999999998885
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=237.81 Aligned_cols=242 Identities=26% Similarity=0.494 Sum_probs=220.5
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKV 265 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~l 265 (500)
..+.+|..+|.++++.|. ...|++|+.|++++|||+.+++...++.||...|..+++++- .++++++.|+.|+-
T Consensus 145 rVi~gHlgWVr~vavdP~-----n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPG-----NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCC-----ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 357899999999999884 358999999999999999999999999999999999999864 48999999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||+...+.++.+.+|-..|.+++.+|. -+.+++|+.|.++++||
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPT------------------------------------ldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPT------------------------------------LDVLVTGGRDSTIRVWD 263 (460)
T ss_pred EechhhhhHHHhccccceeEEEecccc------------------------------------ceeEEecCCcceEEEee
Confidence 999999999999999999999998874 25799999999999999
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 425 (500)
++.. .....+.||...|.+|.+.|-...+++||.|++|++||+..|+-..++..|+..+.++
T Consensus 264 iRtr-~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral----------------- 325 (460)
T KOG0285|consen 264 IRTR-ASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRAL----------------- 325 (460)
T ss_pred eccc-ceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEE-----------------
Confidence 8764 4567899999999999999988889999999999999999999999999999888877
Q ss_pred eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+|....+|+++.|. |+-|++..++.+..+.+|++.|++++.+.|| .+++|++.|.+..|+
T Consensus 326 ----------~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 326 ----------CLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred ----------ecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 3478888999999886 9999999999999999999999999998886 789999999999997
No 52
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=7.2e-32 Score=261.34 Aligned_cols=273 Identities=31% Similarity=0.522 Sum_probs=242.9
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (500)
Q Consensus 149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 228 (500)
+...+.|..|. ..++++++.|++|++||..++......+.+|.+.|.++.+.. .+..+++|+.|.++++||..
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-----~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-----GGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec-----CCCEEEEEecCCcEEeEecC
Confidence 56678888887 568999999999999999999888777999999999998743 34689999999999999999
Q ss_pred CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 229 LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 229 ~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
+++|...+.+|...|.++...+ ..+++|+.|.+|++|++.++..+..+.+|..+|.++....
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~~----------------- 341 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLDE----------------- 341 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEecC-----------------
Confidence 9999999999999999998654 4677899999999999999999999999999999998652
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
..+++|+.|++|++||+. .......+.+|...|.++.+.+. ..+++|+.|++|++||
T Consensus 342 ---------------------~~lvsgs~d~~v~VW~~~-~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd 398 (537)
T KOG0274|consen 342 ---------------------PLLVSGSYDGTVKVWDPR-TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD 398 (537)
T ss_pred ---------------------CEEEEEecCceEEEEEhh-hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence 469999999999999987 44567788999999999988766 8999999999999999
Q ss_pred CCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc
Q 010816 389 GTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 389 ~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 467 (500)
+.++ +++.++.+|..-+..+ ...+++|++++.|++|++||...+++++.+
T Consensus 399 l~~~~~c~~tl~~h~~~v~~l-----------------------------~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~ 449 (537)
T KOG0274|consen 399 LRTKRKCIHTLQGHTSLVSSL-----------------------------LLRDNFLVSSSADGTIKLWDAEEGECLRTL 449 (537)
T ss_pred CCchhhhhhhhcCCccccccc-----------------------------ccccceeEeccccccEEEeecccCceeeee
Confidence 9999 9999999999877655 346789999999999999999999999999
Q ss_pred cC-cccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 468 PG-HADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 468 ~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.+ |...|+.+++. ...+++++.|+++++|+.
T Consensus 450 ~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 450 EGRHVGGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred ccCCcccEEEeecC--cceEEEEecCCeeEEEec
Confidence 88 77889999887 467899999999999973
No 53
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-31 Score=261.04 Aligned_cols=240 Identities=32% Similarity=0.613 Sum_probs=208.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
|...|.|+.|+++|+.+++++.|+.+++|+..+++ .....+.+|...|..++|.| ++..+++++.|++++|||+
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~-----d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSP-----DGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECC-----CCcEEEEecCCceEEEeec
Confidence 37889999999999999999999999999997666 12334589999999999987 4568999999999999999
Q ss_pred -CCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 228 -SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 228 -~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
..+.+++++.+|...|++++|++++ .+++|+.|++|++||++++++.+.
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~----------------------------- 283 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRK----------------------------- 283 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEe-----------------------------
Confidence 5568999999999999999999987 788999999999999987665443
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~ 385 (500)
+.+|.+.|++++|+++|++|++++.|+.|+
T Consensus 284 --------------------------------------------------l~~hs~~is~~~f~~d~~~l~s~s~d~~i~ 313 (456)
T KOG0266|consen 284 --------------------------------------------------LKGHSDGISGLAFSPDGNLLVSASYDGTIR 313 (456)
T ss_pred --------------------------------------------------eeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence 346777899999999999999999999999
Q ss_pred EEeCCCCc--eEEEEeCCccc--EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 386 LWNGTTGK--FVAVFRGHVGP--VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 386 lwd~~~~~--~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
+||+.++. ++..+.++..+ ++.+ .|+|++.++++++.|+.+++||+..+
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSV---------------------------QFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEE---------------------------EECCCCcEEEEecCCCeEEEEEccCC
Confidence 99999999 56777776655 5544 56999999999999999999999999
Q ss_pred cccccccCcccC---EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 462 KLKQDLPGHADE---VFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 462 ~~~~~~~~h~~~---V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+......+|... +++...++.++++++|+.|+.|++|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEe
Confidence 999999998774 44556688999999999999999997
No 54
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=2.1e-31 Score=220.44 Aligned_cols=277 Identities=25% Similarity=0.414 Sum_probs=225.5
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
.+.+|.+.|.+|+|+.+|..|++|+.|+++++|+++..+... ....+|...|..+.|.|.+. .+|++++.|.+|+
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~----d~~atas~dk~ir 90 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP----DLFATASGDKTIR 90 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC----cceEEecCCceEE
Confidence 356899999999999999999999999999999988664322 24678999999999998654 4899999999999
Q ss_pred EEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
+||++.++|+.........+. +.|+|+| +++.++.|..|...|.++.+.....+. ...+..+.+..
T Consensus 91 ~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~----------- 157 (313)
T KOG1407|consen 91 IWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNN----------- 157 (313)
T ss_pred EEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecC-----------
Confidence 999999999887654444443 5677765 788999999999999988766554332 22333443331
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
.++.|+.....|.|.|-... .-.+...++.|+....|+.|+|+|++||+|+.|.
T Consensus 158 -------------------------~nd~Fflt~GlG~v~ILsyp-sLkpv~si~AH~snCicI~f~p~GryfA~GsADA 211 (313)
T KOG1407|consen 158 -------------------------SNDLFFLTNGLGCVEILSYP-SLKPVQSIKAHPSNCICIEFDPDGRYFATGSADA 211 (313)
T ss_pred -------------------------CCCEEEEecCCceEEEEecc-ccccccccccCCcceEEEEECCCCceEeeccccc
Confidence 23456666677888876643 3456778899999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~ 462 (500)
.+.+||++..-|++.+.-+.-||..+ +||.||++||+||.|..|-|=++++|.
T Consensus 212 lvSLWD~~ELiC~R~isRldwpVRTl---------------------------SFS~dg~~lASaSEDh~IDIA~vetGd 264 (313)
T KOG1407|consen 212 LVSLWDVDELICERCISRLDWPVRTL---------------------------SFSHDGRMLASASEDHFIDIAEVETGD 264 (313)
T ss_pred eeeccChhHhhhheeeccccCceEEE---------------------------EeccCcceeeccCccceEEeEecccCC
Confidence 99999999988888888888888877 568999999999999999999999998
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
.+-.++ +.++.+.|+|+|....||-+.+|
T Consensus 265 ~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 265 RVWEIP-CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEEee-ccCCceeEEecCCCceeeEEecC
Confidence 877665 67889999999999999988765
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.3e-32 Score=229.68 Aligned_cols=246 Identities=26% Similarity=0.474 Sum_probs=205.3
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (500)
Q Consensus 142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~ 221 (500)
++..+.+|++.|..+.|+|+|..||||+.|..|.+|+......-...+.+|+..|..+.|.+ ++..++++|.|.+
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~-----d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMR-----DGSHILSCGTDKT 113 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeecc-----CCCEEEEecCCce
Confidence 44567799999999999999999999999999999996543333345779999999999876 5578999999999
Q ss_pred EEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 222 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
++.||++++++++.+++|+.-|.++.-+.-| .+.+|+.|++++|||.++...++.+.
T Consensus 114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------------------- 172 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------------------- 172 (338)
T ss_pred EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------------------
Confidence 9999999999999999999998888743223 46677888888888877643332211
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs 379 (500)
.+..++++.|..++..+.+|+
T Consensus 173 -----------------------------------------------------------~kyqltAv~f~d~s~qv~sgg 193 (338)
T KOG0265|consen 173 -----------------------------------------------------------NKYQLTAVGFKDTSDQVISGG 193 (338)
T ss_pred -----------------------------------------------------------cceeEEEEEecccccceeecc
Confidence 123477889999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
-|+.|++||++......+++||..+|..+ +.+|+|.++.+-+.|.++++||++
T Consensus 194 Idn~ikvWd~r~~d~~~~lsGh~DtIt~l---------------------------sls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 194 IDNDIKVWDLRKNDGLYTLSGHADTITGL---------------------------SLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred ccCceeeeccccCcceEEeecccCceeeE---------------------------EeccCCCccccccccceEEEEEec
Confidence 99999999999999999999999999888 458999999999999999999997
Q ss_pred C----ccccccccCccc----CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 460 T----QKLKQDLPGHAD----EVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 460 ~----~~~~~~~~~h~~----~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
. .+++..+.||.. -...++|+|++.++..|+.|+.+++|+
T Consensus 247 p~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd 294 (338)
T KOG0265|consen 247 PFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWD 294 (338)
T ss_pred ccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEee
Confidence 5 455667777643 346789999999999999999999997
No 56
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=6.9e-33 Score=243.26 Aligned_cols=291 Identities=22% Similarity=0.402 Sum_probs=224.6
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
..+...+..|.+.|..+.|-++...|++|+.|..|++|++...+ ....+.|-.+.|+++.|.++++++++++.|+.++
T Consensus 165 S~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r 244 (459)
T KOG0288|consen 165 SRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLR 244 (459)
T ss_pred hhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCcee
Confidence 34556678899999999999999999999999999999987765 4456778888999999999999999999999999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (500)
+|+....+.. ..+.+|.+.|+++.|...+ .++++|+.|.++++||+....|..+...- ..+..+..+ ...++
T Consensus 245 ~Wnvd~~r~~-~TLsGHtdkVt~ak~~~~~-----~~vVsgs~DRtiK~WDl~k~~C~kt~l~~-S~cnDI~~~-~~~~~ 316 (459)
T KOG0288|consen 245 LWNVDSLRLR-HTLSGHTDKVTAAKFKLSH-----SRVVSGSADRTIKLWDLQKAYCSKTVLPG-SQCNDIVCS-ISDVI 316 (459)
T ss_pred eeeccchhhh-hhhcccccceeeehhhccc-----cceeeccccchhhhhhhhhhheecccccc-ccccceEec-ceeee
Confidence 9999887654 4688999999999875432 34899999999999999887776543211 112222222 22344
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+|-.|+.||+||.+.+.....
T Consensus 317 SgH~DkkvRfwD~Rs~~~~~s----------------------------------------------------------- 337 (459)
T KOG0288|consen 317 SGHFDKKVRFWDIRSADKTRS----------------------------------------------------------- 337 (459)
T ss_pred ecccccceEEEeccCCceeeE-----------------------------------------------------------
Confidence 555566666666554433222
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
...+ +.|++|..+++|..|.+++.|.++.+.|+++.+....+.+-...
T Consensus 338 --------------------v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k----------- 385 (459)
T KOG0288|consen 338 --------------------VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK----------- 385 (459)
T ss_pred --------------------eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-----------
Confidence 1122 36889999999999999999999999999998877766542111
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc--CEEEEEEcCCCCEEEEEeCCC
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~ 493 (500)
+ .+-.+.+.|||++.|+|+||.||.|+||++.++++.+.+..... .|++++|+|.|..|++++.++
T Consensus 386 --------~----asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~ 453 (459)
T KOG0288|consen 386 --------C----ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQK 453 (459)
T ss_pred --------c----ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCc
Confidence 0 01123346899999999999999999999999998877665333 699999999999999999999
Q ss_pred cEEEec
Q 010816 494 VLKLWM 499 (500)
Q Consensus 494 ~v~iW~ 499 (500)
.+.+|.
T Consensus 454 ~v~lW~ 459 (459)
T KOG0288|consen 454 AVTLWT 459 (459)
T ss_pred ceEecC
Confidence 999995
No 57
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-32 Score=226.61 Aligned_cols=282 Identities=26% Similarity=0.451 Sum_probs=230.4
Q ss_pred EEecCCCCCEEEEEEcC---CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 144 FKCTGHKNWVLCIAWSA---DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~---~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
..+.||+.+|..++|+| +|-+|++++.|+.=.+-+-++|..+. .+.+|++.|-+...+ .+..+-++++.|-
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig-tfeghkgavw~~~l~-----~na~~aasaaadf 81 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG-TFEGHKGAVWSATLN-----KNATRAASAAADF 81 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE-eeeccCcceeeeecC-----chhhhhhhhcccc
Confidence 46789999999999985 78899999999998888888887765 578999888665543 3345678999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeec
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTG 298 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ 298 (500)
+.++||.-++..+..| .|..-|.+++|+.|. .|++|+.+..+|+||+...+ ...++.+|...|..+.+...
T Consensus 82 takvw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~e------ 154 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHE------ 154 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEecc------
Confidence 9999999988877765 577789999999874 69999999999999987654 35667788888887766532
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE
Q 010816 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA 378 (500)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg 378 (500)
...+++++.|++|++||.+.......... ...|+++-++++|++|.+
T Consensus 155 ------------------------------D~~iLSSadd~tVRLWD~rTgt~v~sL~~--~s~VtSlEvs~dG~ilTi- 201 (334)
T KOG0278|consen 155 ------------------------------DKCILSSADDKTVRLWDHRTGTEVQSLEF--NSPVTSLEVSQDGRILTI- 201 (334)
T ss_pred ------------------------------CceEEeeccCCceEEEEeccCcEEEEEec--CCCCcceeeccCCCEEEE-
Confidence 24588889999999999887654433332 356999999999997755
Q ss_pred eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 379 s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
++.+.|+.||..+-..++.++ +++.+...+.+|+...+++|+.|..++.||.
T Consensus 202 a~gssV~Fwdaksf~~lKs~k----------------------------~P~nV~SASL~P~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 202 AYGSSVKFWDAKSFGLLKSYK----------------------------MPCNVESASLHPKKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred ecCceeEEeccccccceeecc----------------------------CccccccccccCCCceEEecCcceEEEEEec
Confidence 477889999998877665443 2333344466899999999999999999999
Q ss_pred CCccccccc-cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 459 RTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 459 ~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+++.+..+ .||-++|-+|.|+|||..-++||.||+|+||+
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence 999998885 89999999999999999999999999999997
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-31 Score=216.54 Aligned_cols=243 Identities=22% Similarity=0.402 Sum_probs=200.5
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
+..+..|.++|..+.|+-||++.++|+.|.+|++|++..|..+. ...+|...|..++.. .+...|++|+.|+.+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-tYsghG~EVlD~~~s-----~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-TYSGHGHEVLDAALS-----SDNSKFASCGGDKAV 83 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-eecCCCceeeecccc-----ccccccccCCCCceE
Confidence 34567899999999999999999999999999999999887664 577888888776543 355689999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
.+||+.+++.+..+++|.+.|..+.|+.+. .+++|+.|.++++||.+....
T Consensus 84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~---------------------------- 135 (307)
T KOG0316|consen 84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF---------------------------- 135 (307)
T ss_pred EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC----------------------------
Confidence 999999999999999999999999998765 578899999999999875321
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
.|.+.+....+.|.++..+ +..|++||.|
T Consensus 136 -------------------------------------------------ePiQildea~D~V~Si~v~--~heIvaGS~D 164 (307)
T KOG0316|consen 136 -------------------------------------------------EPIQILDEAKDGVSSIDVA--EHEIVAGSVD 164 (307)
T ss_pred -------------------------------------------------CccchhhhhcCceeEEEec--ccEEEeeccC
Confidence 0111111223446666554 5679999999
Q ss_pred CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
|++|.||++.|++..-+-+| ||+++ +|+++++..++++.|+++++.|-.++
T Consensus 165 GtvRtydiR~G~l~sDy~g~--pit~v---------------------------s~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 165 GTVRTYDIRKGTLSSDYFGH--PITSV---------------------------SFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred CcEEEEEeecceeehhhcCC--cceeE---------------------------EecCCCCEEEEeeccceeeecccchh
Confidence 99999999999876554443 45555 56999999999999999999999999
Q ss_pred cccccccCcccCEE--EEEEcCCCCEEEEEeCCCcEEEec
Q 010816 462 KLKQDLPGHADEVF--AVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 462 ~~~~~~~~h~~~V~--~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++++...||...=+ ..+++.....+++||+||.|++|+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEE
Confidence 99999999987655 456777788999999999999997
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-30 Score=218.33 Aligned_cols=285 Identities=22% Similarity=0.338 Sum_probs=226.8
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKP 184 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~ 184 (500)
-.+.|.++.|+++|.+|++++.|.+++|||..++.++..+..+.-.+..+.|......++.++. |.+||.-++.+.+.
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4678999999999999999999999999999999999988888889999999888877877776 88999999998887
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-eE
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TI 263 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-~i 263 (500)
++ .+.||...|+++..+|.. ..|+++|-|++||+||++..+|.-.+.-... ..++|+|+|.+++.+.++ .|
T Consensus 93 lR-YF~GH~~~V~sL~~sP~~-----d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 93 LR-YFPGHKKRVNSLSVSPKD-----DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred EE-EcCCCCceEEEEEecCCC-----CeEEecccCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeE
Confidence 65 589999999999988854 5899999999999999998887665543333 347899999866655444 99
Q ss_pred EEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816 264 KVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (500)
Q Consensus 264 ~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~ 343 (500)
++||++.-. ..+... +.
T Consensus 165 kLyD~Rs~d--------kgPF~t---------------------------------------------f~---------- 181 (311)
T KOG1446|consen 165 KLYDLRSFD--------KGPFTT---------------------------------------------FS---------- 181 (311)
T ss_pred EEEEecccC--------CCCcee---------------------------------------------Ec----------
Confidence 999986411 000000 00
Q ss_pred EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
+. .+-....+.+.|||||+++..+...+.+++.|.-+|..+.++.++...-.-
T Consensus 182 --i~---------~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~---------------- 234 (311)
T KOG1446|consen 182 --IT---------DNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNL---------------- 234 (311)
T ss_pred --cC---------CCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCc----------------
Confidence 00 011234678999999999999999999999999999988888776543200
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.....|+||++++++|+.||+|++|+++++..+..+.+ +...+.++.|+|. +..-+++|..+-+|.
T Consensus 235 --------~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~--~~mf~sa~s~l~fw~ 301 (311)
T KOG1446|consen 235 --------PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR--YAMFVSASSNLVFWL 301 (311)
T ss_pred --------ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc--eeeeeecCceEEEEe
Confidence 01125799999999999999999999999999988888 7889999999995 555556666788884
No 60
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.2e-32 Score=223.70 Aligned_cols=242 Identities=28% Similarity=0.526 Sum_probs=207.0
Q ss_pred cccEEEEEEcCCC-CeEEEEeCCCcEEEEeCC-CCceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCc
Q 010816 108 TEAVLSVAFSPDG-RQLASGSGDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 108 ~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+.+..++|+++. +.++++++||+++|||.. ...|+..++.|.+.|.++.|++. ...++++|.|++|++|+..-++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 6789999999974 678899999999999964 34577888999999999999984 56788889999999999987665
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEEeCCCe
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCT 262 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~~~dg~ 262 (500)
+. ++.+|+..|.+..|+|... ..|+++|.|+++++||++..-....+..|...+.|+.|+. +..++||+.|+.
T Consensus 140 v~-Tf~gh~~~Iy~a~~sp~~~----nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 140 VQ-TFNGHNSCIYQAAFSPHIP----NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred eE-eecCCccEEEEEecCCCCC----CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce
Confidence 54 5889999999999999654 4899999999999999986544445889999999999985 457999999999
Q ss_pred EEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 263 IKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 263 i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
||.||++.-+ .+.++.+|+-.|+.+.++|.. ...+++++.|.++
T Consensus 215 vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~-----------------------------------~~lLaSasYDmT~ 259 (311)
T KOG0277|consen 215 VRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH-----------------------------------ASLLASASYDMTV 259 (311)
T ss_pred EEEEehhhccccceeecCCceEEEEEecCcch-----------------------------------hhHhhhccccceE
Confidence 9999998653 467789999999999988742 3468999999999
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~ 389 (500)
+|||.............|+.-|..+.||+ ++.++|+.+.|..++||+.
T Consensus 260 riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 260 RIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 99998776666667778999999999998 6789999999999999984
No 61
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.2e-30 Score=226.82 Aligned_cols=276 Identities=28% Similarity=0.468 Sum_probs=225.4
Q ss_pred hhHhhcCCCeeeEEEEEEeecceEeEE-ecccccccccCCcccEEEEEEcCCC---CeEEEEeCCCcEEEEeCCCCcee-
Q 010816 69 SYLEKHKVSVEKVLSIVYQPQAVFRIR-PVNRCSATIAGHTEAVLSVAFSPDG---RQLASGSGDTTVRLWDLNTQTPM- 143 (500)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~gh~~~V~~~~~sp~~---~~lat~~~d~~i~iwd~~~~~~~- 143 (500)
.|+..-+...+-++.-.|.. ..+++ ..+++..++.||+++|.++++.-.. ..+++++.|.++++|.++.+...
T Consensus 106 DWVSsv~~~~~~IltgsYDg--~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~ 183 (423)
T KOG0313|consen 106 DWVSSVKGASKWILTGSYDG--TSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV 183 (423)
T ss_pred hhhhhhcccCceEEEeecCC--eeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh
Confidence 34455555566677777754 34555 4567888999999999988875433 36999999999999998766433
Q ss_pred ---EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC------------------------cccccccCcccce
Q 010816 144 ---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK------------------------PSGNPLSGHKKWI 196 (500)
Q Consensus 144 ---~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~------------------------~~~~~~~~~~~~v 196 (500)
..+.||.+.|.+|+..++|..+++||.|.+|++|+..+.. .....+.||...|
T Consensus 184 ~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~V 263 (423)
T KOG0313|consen 184 KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPV 263 (423)
T ss_pred hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccce
Confidence 3456999999999999999999999999999999932110 0112468999999
Q ss_pred EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe---
Q 010816 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK--- 272 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~--- 272 (500)
.++.|.+ ...+.++|+|.+|+.||+.++.+...+.+ +....|+.+++.. +|++|+.|..||+||.+++.
T Consensus 264 s~V~w~d------~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~ 336 (423)
T KOG0313|consen 264 SSVVWSD------ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV 336 (423)
T ss_pred eeEEEcC------CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence 9999986 24789999999999999999998877654 4678899988754 68899999999999998763
Q ss_pred eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC
Q 010816 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (500)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~ 352 (500)
..+++.+|..+|.++.++|.. ...|++|+.|+++++||.+....+
T Consensus 337 v~~s~~gH~nwVssvkwsp~~-----------------------------------~~~~~S~S~D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 337 VSQSLIGHKNWVSSVKWSPTN-----------------------------------EFQLVSGSYDNTVKLWDVRSTKAP 381 (423)
T ss_pred eEEeeecchhhhhheecCCCC-----------------------------------ceEEEEEecCCeEEEEEeccCCCc
Confidence 356789999999999998752 347999999999999999999889
Q ss_pred ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 353 KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 353 ~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
...+.+|.+.|.++.|+ ++.+|++|+.|.+|+++..
T Consensus 382 lydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 382 LYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ceeeccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence 99999999999999997 5678999999999999864
No 62
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.8e-30 Score=212.72 Aligned_cols=242 Identities=29% Similarity=0.578 Sum_probs=200.5
Q ss_pred eEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816 143 MFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~ 221 (500)
+..+++|.+.+..++|+|- |..||||+.|+.|++|+...+.. |
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------------~-------------------- 50 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------------W-------------------- 50 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------------E--------------------
Confidence 4567789999999999997 77899999999999998754221 0
Q ss_pred EEEEECCCCeEEEEe-cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeee
Q 010816 222 ARIWDVSLRKCVICL-SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 222 v~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
.|...+ .+|+..|++++|+|.| +|++|+.|.++.||.-..+ +++..+++|...|.+++++++
T Consensus 51 ---------~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~s----- 116 (312)
T KOG0645|consen 51 ---------TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSAS----- 116 (312)
T ss_pred ---------EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCC-----
Confidence 011111 3688999999999977 5888999999999987665 567889999999999999875
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC--CCCceeeecccCcEEEEEECCCCCEE
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTRMTGHQQLVNHVYFSPDGQWV 375 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~--~~~~~~~~~h~~~v~~l~~sp~g~~l 375 (500)
+.+|++++.|..|-+|..... ......+.+|...|..+.|+|...+|
T Consensus 117 -------------------------------G~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 117 -------------------------------GNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred -------------------------------CCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 468999999999999987633 23456789999999999999999999
Q ss_pred EEEeCCCcEEEEeCC---CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816 376 ASASFDKSIKLWNGT---TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (500)
Q Consensus 376 asgs~Dg~i~lwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~ 452 (500)
+++|+|.+|++|+-. ..+++.++.+|++.|.++ +|.+.|..|++++.|++
T Consensus 166 ~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~---------------------------~F~~~G~rl~s~sdD~t 218 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSL---------------------------AFDNIGSRLVSCSDDGT 218 (312)
T ss_pred EEeccCCeEEEEeecCCCCeeEEEEecCccceEEEE---------------------------EecCCCceEEEecCCcc
Confidence 999999999999866 346889999999999888 55899999999999999
Q ss_pred EEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 453 LKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 453 v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+||...+ .+++ |.++++.+.|. ...|+|++.|+.|+++.
T Consensus 219 v~Iw~~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 219 VSIWRLYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred eEeeeecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEE
Confidence 99997542 2333 78899999998 45899999999999985
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=234.66 Aligned_cols=285 Identities=22% Similarity=0.397 Sum_probs=221.7
Q ss_pred ccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..|.||.+.|.|++=+|.. ..+|+|+.||.|+|||+.+..+...+..|.+.|..+++.. ..+++++.|++|+.|.++
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~ 137 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKID 137 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeecc
Confidence 4578999999999999987 7899999999999999999999999999999999999976 678999999999999865
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEe
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGS 258 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~ 258 (500)
-. ... .+.+ +..+.++. .......|++||. .|.|||.+....+..+.-....|.++.|+|.. .|++++
T Consensus 138 ~~-p~~-tilg-~s~~~gId-----h~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~ 207 (433)
T KOG0268|consen 138 GP-PLH-TILG-KSVYLGID-----HHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA 207 (433)
T ss_pred CC-cce-eeec-cccccccc-----cccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec
Confidence 32 111 1111 12222332 1122346888876 48999998888888887777889999999854 688888
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|++|.|||++++..++.+... -.-+.++|+|. ...|++|+.|
T Consensus 208 sDrsIvLyD~R~~~Pl~KVi~~-mRTN~IswnPe------------------------------------afnF~~a~ED 250 (433)
T KOG0268|consen 208 SDRSIVLYDLRQASPLKKVILT-MRTNTICWNPE------------------------------------AFNFVAANED 250 (433)
T ss_pred cCCceEEEecccCCccceeeee-ccccceecCcc------------------------------------ccceeecccc
Confidence 9999999999998877654211 11234445442 2358899999
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeec
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFR 417 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~ 417 (500)
-.++.+|++.-..+.....+|...|.+|+|||.|+-+++||.|.+||||....+..-.++-. ....|.++
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~V--------- 321 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCV--------- 321 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEE---------
Confidence 99999999988888888899999999999999999999999999999999876643322211 11223333
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~ 462 (500)
.||-|.+++++||.|+.|++|.....+
T Consensus 322 ------------------k~S~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 322 ------------------KYSMDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred ------------------EEeccccEEEecCCCcceeeeecchhh
Confidence 679999999999999999999876533
No 64
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=5.7e-29 Score=223.92 Aligned_cols=391 Identities=19% Similarity=0.305 Sum_probs=249.0
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCC--------cEEEEeCCCCceeEEecCCCCCEEEEEEcCC--CCEEEEE-
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDT--------TVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD--GKHLVSG- 168 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~--------~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~- 168 (500)
..+.+.||++.|.|++.+||.-++|+|..-| .++|||..+-..+..+......|.|++|++- |.+|+..
T Consensus 96 ~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 96 SQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred hcccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEec
Confidence 3445689999999999999999999886555 5999998776666667677889999999973 4555543
Q ss_pred -eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE---ecCc-cccE
Q 010816 169 -SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC---LSGH-TLAV 243 (500)
Q Consensus 169 -~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~---~~~h-~~~v 243 (500)
+.+..+.+||+..+.... .....+..|....|+|...+ .+++++. +.+..|+.+.+..... +.++ ...|
T Consensus 176 ~s~~h~lSVWdWqk~~~~~-~vk~sne~v~~a~FHPtd~n----liit~Gk-~H~~Fw~~~~~~l~k~~~~fek~ekk~V 249 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLG-PVKTSNEVVFLATFHPTDPN----LIITCGK-GHLYFWTLRGGSLVKRQGIFEKREKKFV 249 (626)
T ss_pred CCCccccchhhchhhhccC-cceeccceEEEEEeccCCCc----EEEEeCC-ceEEEEEccCCceEEEeeccccccceEE
Confidence 345679999998775443 34555677888999997543 5666665 8899999987755432 3333 3679
Q ss_pred EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC----HHHH-HHHHH
Q 010816 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS----PEEM-KKAAL 318 (500)
Q Consensus 244 ~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~ 318 (500)
.|+.|.+++.++||..+|.|.||+..+.+..+....|...|.+++...++.+.+|..|.....+.. ..+. .....
T Consensus 250 l~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~ 329 (626)
T KOG2106|consen 250 LCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQF 329 (626)
T ss_pred EEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhc
Confidence 999999999999999999999999988888887779999999999988887777766543322210 0000 00000
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 398 (500)
.....+....++ ++.|...+.|..=.+. ........+|.+....++.+|+.+.+++++.|+.+++|+-...+.-..+
T Consensus 330 G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~--~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~ 406 (626)
T KOG2106|consen 330 GPIRTVAEGKGD-ILVGTTRNFILQGTLE--NGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKII 406 (626)
T ss_pred CCeeEEecCCCc-EEEeeccceEEEeeec--CCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEe
Confidence 011111112222 3333333333221111 1122334556666666666666666666666666666662221111111
Q ss_pred -------eCCcccEEEEEeeeeeeecCC---CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccc
Q 010816 399 -------RGHVGPVYQIRFELIYCFRYP---SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDL 467 (500)
Q Consensus 399 -------~~h~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~ 467 (500)
.-|...+..+.+....-+... ............+++++|+|+|.+||.|+.|+.|+||.+..... ....
T Consensus 407 ~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~ 486 (626)
T KOG2106|consen 407 EDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV 486 (626)
T ss_pred cCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe
Confidence 112222222211100000000 00000111123456668899999999999999999998865332 2211
Q ss_pred -cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 468 -PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 468 -~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.-|...|+.++||+|+++|.+-+.|-.|..|.
T Consensus 487 ~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 487 GKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 11337899999999999999999999999994
No 65
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-30 Score=246.96 Aligned_cols=310 Identities=21% Similarity=0.379 Sum_probs=243.8
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
+.+...+.+|.++|..++|||+..++++|+.|..|+||+..+.++++++.||-+.|..+.|++.-..++|+|.|.+|+||
T Consensus 41 ~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIW 120 (1202)
T KOG0292|consen 41 GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIW 120 (1202)
T ss_pred hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEE
Confidence 34667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC--------C-------------------
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL--------R------------------- 230 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~--------~------------------- 230 (500)
++.+++++. .+.||+..|-+.+|+|.. ..++++|-|.+||+||+.. +
T Consensus 121 Nwqsr~~ia-vltGHnHYVMcAqFhptE-----DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~ 194 (1202)
T KOG0292|consen 121 NWQSRKCIA-VLTGHNHYVMCAQFHPTE-----DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQT 194 (1202)
T ss_pred eccCCceEE-EEecCceEEEeeccCCcc-----ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCc
Confidence 999998775 589999999999998843 5799999999999999741 1
Q ss_pred e--EEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCe--eEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 231 K--CVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 231 ~--~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
. .-..+.||...|.-++|.|. ..|++|+.|+.|++|.....+ .+.+..+|...|.++-++|.
T Consensus 195 DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~------------- 261 (1202)
T KOG0292|consen 195 DAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPH------------- 261 (1202)
T ss_pred CeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCc-------------
Confidence 0 12346799999999999985 478999999999999876543 35567889999999988874
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~ 385 (500)
.+.+++.|.|+++++||+... .....+....+..+.++.+|..+++|+| .|+-+.
T Consensus 262 -----------------------q~lIlSnsEDksirVwDm~kR-t~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~ 316 (1202)
T KOG0292|consen 262 -----------------------QDLILSNSEDKSIRVWDMTKR-TSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMI 316 (1202)
T ss_pred -----------------------cceeEecCCCccEEEEecccc-cceeeeeccCCeEEEEEecCCcceeeee-cCCceE
Confidence 467899999999999998643 3344555556789999999999988876 666667
Q ss_pred EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
+|.++.-+ +.+++ ++..|.-.- |..|+-+|+++.+-..
T Consensus 317 VFkleREr----------pa~~v-------------------------------~~n~LfYvk-d~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 317 VFKLERER----------PAYAV-------------------------------NGNGLFYVK-DRFIRSYDLRTQKDTA 354 (1202)
T ss_pred EEEEcccC----------ceEEE-------------------------------cCCEEEEEc-cceEEeeeccccccce
Confidence 77654322 22222 233333333 8889999998854322
Q ss_pred --cccCc---ccCEEEEEEcCCCCEE-EEEeCCC
Q 010816 466 --DLPGH---ADEVFAVDWSPDGEKV-ASGGKDR 493 (500)
Q Consensus 466 --~~~~h---~~~V~~l~~s~dg~~l-~s~~~D~ 493 (500)
.++.. ..++.+++++|....+ ++...|+
T Consensus 355 v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n 388 (1202)
T KOG0292|consen 355 VASLRRPGTLWQPPRSLSYNPAENAVLICSNLDN 388 (1202)
T ss_pred eEeccCCCcccCCcceeeeccccCeEEEEeccCC
Confidence 22222 3577889999976544 4434443
No 66
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=9.9e-31 Score=243.90 Aligned_cols=278 Identities=27% Similarity=0.456 Sum_probs=232.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEE-EEeeeeecCCCCceEEEEeCCC
Q 010816 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITG-ISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~-~~~~~~~~~~~~~~~~s~s~dg 220 (500)
...+.+|...|..+++.+.. .++++|.||++++|+-..++... ..+.+|...+.. +.+.+ .+..++++|+.|.
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e----~~~~~l~~g~~D~ 81 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE----SDKGRLVVGGMDT 81 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceecc----ccCcceEeecccc
Confidence 45678999999999887654 79999999999999986655444 456677777765 66543 3446799999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
++.+|.......+..+.||...|.|++-..++.+++||+|.++++|- .+++...+.+|...|.+++.-++
T Consensus 82 ~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e-------- 151 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPE-------- 151 (745)
T ss_pred eEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEec--chhhhcccCCcchheeeeeecCC--------
Confidence 99999999999999999999999999988888899999999999995 45677779999999998876553
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~ 380 (500)
+.+++||.|.+|++|.- ......+.+|.+.|+.+++-+++. |++++.
T Consensus 152 -----------------------------~~~vTgsaDKtIklWk~---~~~l~tf~gHtD~VRgL~vl~~~~-flScsN 198 (745)
T KOG0301|consen 152 -----------------------------NTYVTGSADKTIKLWKG---GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN 198 (745)
T ss_pred -----------------------------CcEEeccCcceeeeccC---CchhhhhccchhheeeeEEecCCC-eEeecC
Confidence 36899999999999974 345567889999999999988754 778999
Q ss_pred CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
||.|++|++ +|+++..+.||+.-+|++.. .++++.+++++.|++++||+..
T Consensus 199 Dg~Ir~w~~-~ge~l~~~~ghtn~vYsis~---------------------------~~~~~~Ivs~gEDrtlriW~~~- 249 (745)
T KOG0301|consen 199 DGSIRLWDL-DGEVLLEMHGHTNFVYSISM---------------------------ALSDGLIVSTGEDRTLRIWKKD- 249 (745)
T ss_pred CceEEEEec-cCceeeeeeccceEEEEEEe---------------------------cCCCCeEEEecCCceEEEeecC-
Confidence 999999999 89999999999999998842 5788899999999999999976
Q ss_pred ccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++.+.+.--.-.||++.+-++|. |++|+.||.||||.
T Consensus 250 -e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 250 -ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred -ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 55554443344799998887775 79999999999995
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=9.1e-31 Score=221.79 Aligned_cols=298 Identities=22% Similarity=0.374 Sum_probs=228.3
Q ss_pred cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------C-ceeEEecCCCCCEEEEEE
Q 010816 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------------Q-TPMFKCTGHKNWVLCIAW 158 (500)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----------------~-~~~~~~~~h~~~v~~v~~ 158 (500)
.......+..|++++.+-+|+|||.++|||+.|.+|+|.|++. + ..+.++-.|...|.++.|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F 180 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF 180 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee
Confidence 3445567789999999999999999999999999999999861 1 224566789999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-
Q 010816 159 SADGKHLVSGSKAGELQCWDPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL- 236 (500)
Q Consensus 159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~- 236 (500)
+|....|++|+.|++|+++|.......+ ........+|.+++|+| .+..++.|..-.++++||+++.+|...-
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP-----sGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP-----SGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC-----CCceEEEecCCCceeEEeccceeEeeecC
Confidence 9999999999999999999986532111 01122346788999887 3457777888889999999999886543
Q ss_pred --cCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816 237 --SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (500)
Q Consensus 237 --~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (500)
.+|+..|+++.+++.+. .++|+.||.|++||-..++++.++.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~----------------------------------- 300 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG----------------------------------- 300 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH-----------------------------------
Confidence 37899999999999875 5689999999999976666554331
Q ss_pred HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
..| ...|.+..|..+|+++.+.+.|..+++|.+.+|
T Consensus 301 -------------------------------------------~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~ 337 (430)
T KOG0640|consen 301 -------------------------------------------NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG 337 (430)
T ss_pred -------------------------------------------hhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC
Confidence 012 134778889999999999999999999999999
Q ss_pred ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccc-cCc
Q 010816 393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDL-PGH 470 (500)
Q Consensus 393 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~-~~h 470 (500)
+++..+.|....-... +. +...|+....+++.-. ..+.+.-||.++...+..+ .||
T Consensus 338 R~l~~YtGAg~tgrq~-~r---------------------tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgH 395 (430)
T KOG0640|consen 338 RMLKEYTGAGTTGRQK-HR---------------------TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGH 395 (430)
T ss_pred ceEEEEecCCcccchh-hh---------------------hhhhhcCccceEEccccccCceeeccccchhhhhhcccCC
Confidence 9999887753211110 00 0012344444544432 3467888999886654433 479
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 471 ADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++.+..+.-||.+..+.+||.|-++|+|-
T Consensus 396 n~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 396 NGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred CCCceEEEeCCCCCceeeecccceeeeee
Confidence 99999999999999999999999999994
No 68
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3e-29 Score=203.42 Aligned_cols=293 Identities=25% Similarity=0.360 Sum_probs=229.0
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC------------CceeE---EecCCCCCEEEEEEcCCCCEEEEEeCC
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT------------QTPMF---KCTGHKNWVLCIAWSADGKHLVSGSKA 171 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~------------~~~~~---~~~~h~~~v~~v~~s~~~~~l~s~~~d 171 (500)
.+..|.+++|+|.|.+.|.|+...+.+|..... ..+.. .-+.|.+.|.|.+|+|+|.+|++|+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 466899999999999999999999999985321 12222 235688999999999999999999999
Q ss_pred CeEEEEeCCCCCc--cc--ccccCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816 172 GELQCWDPQTGKP--SG--NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (500)
Q Consensus 172 ~~i~~wd~~~~~~--~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 246 (500)
++|++...+...+ .. ..+.-|.+.|..++|... .+..+..+++++ .|..|++-|...++....+.||++-|.++
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~-~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDD-PESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecC-CCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 9999976543221 11 135668888999988643 233445566554 46677777889999999999999999887
Q ss_pred EeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 247 KWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 247 ~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
.--.+-.+++|++|.+||+||++-..++.++....
T Consensus 190 yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~--------------------------------------------- 224 (350)
T KOG0641|consen 190 YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDF--------------------------------------------- 224 (350)
T ss_pred EEecCcEEEccCCCceEEEEeeeccceeeeccCcc---------------------------------------------
Confidence 43234578899999999999998655544331100
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
.|+ . -....|.+++..|.|++|++|-.|....+||++.++.+..|--|...|.
T Consensus 225 ----------~~~----------g-------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir 277 (350)
T KOG0641|consen 225 ----------HDG----------G-------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR 277 (350)
T ss_pred ----------cCC----------C-------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee
Confidence 000 0 0124588999999999999999999999999999999999999999999
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc----ccccccCcccCEEEEEEcCC
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK----LKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~----~~~~~~~h~~~V~~l~~s~d 482 (500)
+++| ||.-.++++++.|..|++-|++..- .+-....|++++..+.|+|.
T Consensus 278 ~vrf---------------------------sp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~ 330 (350)
T KOG0641|consen 278 CVRF---------------------------SPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQ 330 (350)
T ss_pred EEEe---------------------------CCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCc
Confidence 9965 8999999999999999999987532 12344569999999999999
Q ss_pred CCEEEEEeCCCcEEEec
Q 010816 483 GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW~ 499 (500)
.--+++.+.|+++.+|.
T Consensus 331 d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 331 DFSFISSSADKTATLWA 347 (350)
T ss_pred cceeeeccCcceEEEec
Confidence 99999999999999995
No 69
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=6e-31 Score=251.60 Aligned_cols=254 Identities=27% Similarity=0.462 Sum_probs=200.1
Q ss_pred cccc-CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------------------------------------
Q 010816 102 ATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------------------------------------- 139 (500)
Q Consensus 102 ~~~~-gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----------------------------------------- 139 (500)
+.+. +|.+.|+++.||+||+|||+||.|+.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 4455 8999999999999999999999999999997633
Q ss_pred -------------------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEE
Q 010816 140 -------------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (500)
Q Consensus 140 -------------------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~ 200 (500)
.+|+..+.||.+.|..++|+.++ +|+|+|+|++||||++....++. ...|...|++++
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~--~F~HndfVTcVa 416 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK--VFSHNDFVTCVA 416 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee--EEecCCeeEEEE
Confidence 01334567999999999999764 89999999999999998777664 457999999999
Q ss_pred eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
|+|.+ .++|++|+-|+.||||++...+.+.-..- ..-|++++|.|||. .+.|+.+|.+++|+....+.......
T Consensus 417 FnPvD----DryFiSGSLD~KvRiWsI~d~~Vv~W~Dl-~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 417 FNPVD----DRYFISGSLDGKVRLWSISDKKVVDWNDL-RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred ecccC----CCcEeecccccceEEeecCcCeeEeehhh-hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99964 46899999999999999988776654433 36799999999985 66799999999999876554433211
Q ss_pred CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h 359 (500)
.+ ... .+ ..|
T Consensus 492 --------------------------------------------------------------~~---~~~----Kk-~~~ 501 (712)
T KOG0283|consen 492 --------------------------------------------------------------RL---HNK----KK-KQG 501 (712)
T ss_pred --------------------------------------------------------------ee---ccC----cc-ccC
Confidence 00 000 11 123
Q ss_pred cCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 360 QQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 360 ~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
. .|+.+.|.|.. .-+++.+.|..|||||.++..++..|+|+...-.++. .+|+
T Consensus 502 ~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~-------------------------Asfs 555 (712)
T KOG0283|consen 502 K-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS-------------------------ASFS 555 (712)
T ss_pred c-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee-------------------------eeEc
Confidence 3 69999998743 4566678999999999999999888888654322221 1578
Q ss_pred CCCCEEEEEECCCcEEEEECC
Q 010816 439 ADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.||+++++|+.|..|+||+..
T Consensus 556 ~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 556 SDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCCCEEEEeecCceEEEEeCC
Confidence 899999999999999999973
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=6.3e-30 Score=250.75 Aligned_cols=314 Identities=25% Similarity=0.398 Sum_probs=236.7
Q ss_pred CcccEEEEEEcCCCCeEEEEe--CCCcEEEEeCCC------------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC
Q 010816 107 HTEAVLSVAFSPDGRQLASGS--GDTTVRLWDLNT------------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG 172 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~--~d~~i~iwd~~~------------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~ 172 (500)
+...|.+++.+|||..+|||+ .|+.++||+.+. .+.+.....|.+.|.|+.|+|||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345799999999999999999 899999998642 234556678999999999999999999999999
Q ss_pred eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (500)
.|.+|+.... ... . .|-+.+.-. +++.-+++..+.+|...|..+.|+|++
T Consensus 92 ~v~iW~~~~~-~~~-~-----------------------~fgs~g~~~-----~vE~wk~~~~l~~H~~DV~Dv~Wsp~~ 141 (942)
T KOG0973|consen 92 LVMIWERAEI-GSG-T-----------------------VFGSTGGAK-----NVESWKVVSILRGHDSDVLDVNWSPDD 141 (942)
T ss_pred eEEEeeeccc-CCc-c-----------------------ccccccccc-----ccceeeEEEEEecCCCccceeccCCCc
Confidence 9999987531 000 0 011111111 223446777889999999999999977
Q ss_pred -eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 253 -VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 253 -~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
++++++.|++|.+||.++.+.++.+++|...|..+.+.|. +.+
T Consensus 142 ~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~------------------------------------Gky 185 (942)
T KOG0973|consen 142 SLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPI------------------------------------GKY 185 (942)
T ss_pred cEEEEecccceEEEEccccceeeeeeecccccccceEECCc------------------------------------cCe
Confidence 5889999999999999999999999999999999998875 457
Q ss_pred EEEeeCCCeEEEEcCCCCCCCceeeecc------cCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCC
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGH------QQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h------~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h 401 (500)
|++-++|++|++|+... ....+.+.++ ...+..++|||||.+|++.-. -.++.|.+-.+.+.-..|-||
T Consensus 186 ~ASqsdDrtikvwrt~d-w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH 264 (942)
T KOG0973|consen 186 FASQSDDRTLKVWRTSD-WGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH 264 (942)
T ss_pred eeeecCCceEEEEEccc-ceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC
Confidence 99999999999998543 1222222222 234788999999999998632 346888888888877889999
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC--CEEEEEECCCcEEEEECCCccccccccC-cccCEEEEE
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVD 478 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~ 478 (500)
.+++..++|.+..--+... +.. .-.++. ..+|+||.|++|-||.....+.+..... ....|.+++
T Consensus 265 ~~p~evvrFnP~lfe~~~~------ng~------~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 265 SAPVEVVRFNPKLFERNNK------NGT------STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMS 332 (942)
T ss_pred CCceEEEEeChHHhccccc------cCC------ccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeee
Confidence 9999999885421111000 000 001111 2578999999999999877776543321 245799999
Q ss_pred EcCCCCEEEEEeCCCcEEEec
Q 010816 479 WSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 479 ~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+|||..|..+|-||+|.+.+
T Consensus 333 WspdG~~LfacS~DGtV~~i~ 353 (942)
T KOG0973|consen 333 WSPDGFSLFACSLDGTVALIH 353 (942)
T ss_pred EcCCCCeEEEEecCCeEEEEE
Confidence 999999999999999998764
No 71
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-29 Score=237.05 Aligned_cols=270 Identities=28% Similarity=0.550 Sum_probs=218.5
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (500)
Q Consensus 114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 193 (500)
++|+ ..+.||.|. ...|.+|+..++.....+..++..|+++.|+++|.+|+.|..+|.|.|||..+.+.......+|.
T Consensus 183 ldWs-s~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 183 LDWS-SANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHA 260 (484)
T ss_pred hhcc-cCCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcC
Confidence 4555 344566654 45799999988876555555589999999999999999999999999999988776654444499
Q ss_pred cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC
Q 010816 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG 271 (500)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~ 271 (500)
..|-+++|+. ..+.+|+.|+.|..+|++..+.... +.+|...|..+.|++|+ ++++|+.|+.+.|||...
T Consensus 261 ~rvg~laW~~-------~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~- 332 (484)
T KOG0305|consen 261 SRVGSLAWNS-------SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLS- 332 (484)
T ss_pred ceeEEEeccC-------ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCC-
Confidence 9999999974 4788999999999999998776555 78899999999999886 577888888888887522
Q ss_pred eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (500)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~ 351 (500)
..
T Consensus 333 ------------------------------------------------------------------------------~~ 334 (484)
T KOG0305|consen 333 ------------------------------------------------------------------------------PE 334 (484)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 12
Q ss_pred CceeeecccCcEEEEEECC-CCCEEEEEe--CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816 352 PKTRMTGHQQLVNHVYFSP-DGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (500)
Q Consensus 352 ~~~~~~~h~~~v~~l~~sp-~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
+...+..|...|..++|+| ...+||+|+ .|+.|++||..+|+.+.....
T Consensus 335 p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt---------------------------- 386 (484)
T KOG0305|consen 335 PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT---------------------------- 386 (484)
T ss_pred ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc----------------------------
Confidence 3345567888899999999 567899874 699999999999887654321
Q ss_pred cccceeeEEcCCCCEEEEE--ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 429 SCCMSLYSWSADSRLLLSG--SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 429 ~~~~~~~~~s~~~~~l~s~--s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...++.+.|++..+-|+++ -.++.|.||+..+.+.+..+.||..+|..+++||||..+++|+.|.++++|.
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 1223445899998766654 4678999999999999999999999999999999999999999999999996
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.4e-30 Score=228.78 Aligned_cols=281 Identities=24% Similarity=0.368 Sum_probs=227.6
Q ss_pred cccEEEEEEcCCCCe-EEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 108 TEAVLSVAFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~-lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
.+.|.+++|+|...+ +|++ ..-.+.||+..+......+......|.++.|-.||++||+|+..|.|+++|..+ +...
T Consensus 26 ~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence 467999999997654 4444 345799999887766666777888999999999999999999999999999544 4455
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIK 264 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~ 264 (500)
..+.+|..++..+.|+|.. ...|++|+.|+.+++||+.+......+.+|+..|.|.+|+|- ..++|||.||.||
T Consensus 104 R~~~ah~apv~~~~f~~~d----~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQD----NTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHhhccCceeEEEecccC----CeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 5688999999999998853 457899999999999999999887789999999999999874 3699999999999
Q ss_pred EEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816 265 VWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (500)
Q Consensus 265 lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~ 343 (500)
+||.+.. ..+.++ .|+.+|..+.+-|. +..+++++ .+.+++
T Consensus 180 l~DtR~~~~~v~el-nhg~pVe~vl~lps------------------------------------gs~iasAg-Gn~vkV 221 (487)
T KOG0310|consen 180 LWDTRSLTSRVVEL-NHGCPVESVLALPS------------------------------------GSLIASAG-GNSVKV 221 (487)
T ss_pred EEEeccCCceeEEe-cCCCceeeEEEcCC------------------------------------CCEEEEcC-CCeEEE
Confidence 9999876 444444 47888888876553 23455544 457999
Q ss_pred EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
||+..+.+....+..|...|+|+++..++..|.+|+.||.|++||+.+-+.+..++ -.++|.++
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsi--------------- 285 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSI--------------- 285 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeE---------------
Confidence 99987777667777799999999999999999999999999999988777766554 23455444
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
+.+|+++.++.|..||.+-+=+...
T Consensus 286 ------------avs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 286 ------------AVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ------------EecCCCceEEEecccceeeeehhhc
Confidence 5689999999999999887665433
No 73
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-30 Score=246.00 Aligned_cols=288 Identities=20% Similarity=0.356 Sum_probs=204.6
Q ss_pred ec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC---------cccceEEEEeeeeecCCCCceEEE
Q 010816 146 CT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG---------HKKWITGISWEPVHLNAPCRRFVS 215 (500)
Q Consensus 146 ~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~s 215 (500)
+. .|.+.|.++.|++||++||+||.|+.|+||.+...+........ .+..+..+.-.+..........-.
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 79999999999999999999999999999987542210000000 000000000000000000000011
Q ss_pred EeCCCcEEEEECC----CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecC
Q 010816 216 ASKDGDARIWDVS----LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALST 291 (500)
Q Consensus 216 ~s~dg~v~iwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~ 291 (500)
+..... .+.+.. ..+.+..+.||.+.|.++.|+.++.|++++.|.+||||++....+++.+. |...|+|++|+|
T Consensus 342 ~~~s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 342 GSQSPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred ccCCcc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 111112 111211 12455668899999999999999999999999999999999999999886 888999999998
Q ss_pred cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (500)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~ 371 (500)
.. ..+|++||-|+.++||++...+ ......-.+.|++++|.||
T Consensus 420 vD-----------------------------------DryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~Pd 462 (712)
T KOG0283|consen 420 VD-----------------------------------DRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPD 462 (712)
T ss_pred cC-----------------------------------CCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccC
Confidence 52 4679999999999999975432 2223334578999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeC--C------cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCC
Q 010816 372 GQWVASASFDKSIKLWNGTTGKFVAVFRG--H------VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSR 442 (500)
Q Consensus 372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--h------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~ 442 (500)
|++.+.|+.+|.+++|+....++...+.- | ...|+.++| .| +..
T Consensus 463 Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~---------------------------~p~~~~ 515 (712)
T KOG0283|consen 463 GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF---------------------------FPGDPD 515 (712)
T ss_pred CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe---------------------------cCCCCC
Confidence 99999999999999999987776543321 1 114555543 32 233
Q ss_pred EEEEEECCCcEEEEECCCccccccccCccc--CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 443 LLLSGSKDSTLKVWDIRTQKLKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
-+++.+.|..|||||++...++.+++|+.. .-....|+.||++|+++++|..|+||.
T Consensus 516 ~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 516 EVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWK 574 (712)
T ss_pred eEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEe
Confidence 677889999999999999899888888643 345678999999999999999999996
No 74
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=2.7e-30 Score=233.02 Aligned_cols=294 Identities=25% Similarity=0.432 Sum_probs=219.6
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce----eEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP----MFKC-TGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~----~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
+...+++|+..|.++++.|.|.+|++|+.|.+|++||+..-.. ...+ ..-...|.+++|++.|+.|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 4456889999999999999999999999999999999864211 1111 1223469999999999999999989999
Q ss_pred EEEeCCCCCcc---------c--ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEe-----c
Q 010816 175 QCWDPQTGKPS---------G--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL-----S 237 (500)
Q Consensus 175 ~~wd~~~~~~~---------~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~-----~ 237 (500)
+|+|..-.... . ....||...+++..|+|..- ..|++++.||++||||+...+ .+.++ .
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k----~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK----EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc----cceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 99996432110 0 13478999999999999643 479999999999999997543 22222 2
Q ss_pred CccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 238 GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
+...+++.++|++++. |++|..||+|.+|+.+... ++ +
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~---------------p------------------------- 353 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-VR---------------P------------------------- 353 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcc-cc---------------c-------------------------
Confidence 3456788899999874 6778899999999864310 00 0
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-c
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-K 393 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~ 393 (500)
.+ ..-..|.. .|+||+||+||++|++=+.|+++++||++.- +
T Consensus 354 -----------------------~~------------~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 354 -----------------------VM------------KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred -----------------------ce------------EeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 00 01123444 7999999999999999999999999999763 3
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC------CCcEEEEECCCccccccc
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~------d~~v~iwd~~~~~~~~~~ 467 (500)
++.+..+-..+ ++ .+...|||+.+++++|.. .|++.+||..+...++++
T Consensus 399 pL~~~tgL~t~-------------~~------------~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 399 PLNVRTGLPTP-------------FP------------GTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred chhhhcCCCcc-------------CC------------CCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 34333221110 00 112268999999999864 468999999998888877
Q ss_pred cCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 468 PGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 468 ~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.-....|-.+.|+|.=+.|..|+.||+++++
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence 6667789999999998999999999999986
No 75
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.9e-30 Score=212.77 Aligned_cols=252 Identities=23% Similarity=0.419 Sum_probs=206.8
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd 178 (500)
..+|.+.|..+.....|++|||++.|++|||+.+... .++..+.||.++|..++|.. -|.+|||+++||+|.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 3579999999999999999999999999999998754 45678999999999999976 699999999999999999
Q ss_pred CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCC---
Q 010816 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD--- 251 (500)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~--- 251 (500)
-++|+-.+ .....|...|++++|.|... +-.|+.++.||.|.|.+.+.. ........|...|+++.|.|.
T Consensus 87 e~~g~w~k~~e~~~h~~SVNsV~waphey---gl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 87 EENGRWTKAYEHAAHSASVNSVAWAPHEY---GLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred cCCCchhhhhhhhhhcccceeeccccccc---ceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 88885322 23567999999999998653 457899999999999988654 122345679999999999764
Q ss_pred C------------eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816 252 G------------VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (500)
Q Consensus 252 ~------------~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (500)
| .|++|+.|+.|+||+...++. -+.+.+|..+|+.+++.|...
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~g----------------------- 220 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVG----------------------- 220 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccC-----------------------
Confidence 2 489999999999999887743 345889999999999988531
Q ss_pred HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC--CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
.+...++++|+||++.||....... ....+....+.+..++||+.|+.|+.++.|+.|.+|.-.
T Consensus 221 ---------l~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 221 ---------LPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred ---------CCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 1345799999999999997653322 223345567889999999999999999999999999643
No 76
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.6e-29 Score=234.41 Aligned_cols=366 Identities=25% Similarity=0.432 Sum_probs=256.0
Q ss_pred cccccCCcccEEEEEEcCCCC---eEEEEeCCCcEEEEeCCCCc-----------------e----eE----------Ee
Q 010816 101 SATIAGHTEAVLSVAFSPDGR---QLASGSGDTTVRLWDLNTQT-----------------P----MF----------KC 146 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~---~lat~~~d~~i~iwd~~~~~-----------------~----~~----------~~ 146 (500)
...+.||.+.|.+++|...+. +||++|.|..||||.+.-+. + +. .+
T Consensus 184 v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall 263 (764)
T KOG1063|consen 184 VAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALL 263 (764)
T ss_pred EEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhh
Confidence 356889999999999987654 89999999999999763110 1 10 12
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc--c----ccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--G----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
.||+++|.++.|+|.+..|+++|.|+++.+|.+.+..-+ . -...+......+..|+| +...+++-+.-|
T Consensus 264 ~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~-----n~~~ii~~g~~G 338 (764)
T KOG1063|consen 264 MGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSP-----NSNVIIAHGRTG 338 (764)
T ss_pred cCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcC-----CCCEEEEecccC
Confidence 399999999999999999999999999999987643110 0 01122333455666765 335688889999
Q ss_pred cEEEEECCC-C--eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEE---eecCCceEEEEEecC
Q 010816 221 DARIWDVSL-R--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRE---LKGHGHWVNSLALST 291 (500)
Q Consensus 221 ~v~iwd~~~-~--~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~---~~~~~~~v~~~~~~~ 291 (500)
..++|.... . .....+.||...|.+++|+|.| +|++.+.|.+-|+|-.- |+. -.+ -+.|+..+.++++-+
T Consensus 339 g~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn 417 (764)
T KOG1063|consen 339 GFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVN 417 (764)
T ss_pred cEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehcc
Confidence 999998322 1 2334567999999999999876 68899999999998643 221 122 245888899988777
Q ss_pred -cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc-C---------------CCCcEEEEeeCCCeE-EEE-------cC
Q 010816 292 -EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK-G---------------NAPERLVSGSDDFTM-FLW-------EP 346 (500)
Q Consensus 292 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~s~s~d~~v-~~w-------d~ 346 (500)
+..+..++.....+.+..|..+............ + .+...+.--..+|.. ..| .+
T Consensus 418 ~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p 497 (764)
T KOG1063|consen 418 EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAP 497 (764)
T ss_pred CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCc
Confidence 5555555544444555555444332211111000 0 000000000111110 001 00
Q ss_pred ------CCC--------CCCceeeecccCcEEEEEECCCCCEEEEEeCCC-----cEEEEeCCCCceEEEEeCCcccEEE
Q 010816 347 ------AVS--------KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-----SIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 347 ------~~~--------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-----~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
... -+...++.||...|.+++.+|+|+++|+++... .|++|+..+...+..+.+|.-.|+.
T Consensus 498 ~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~ 577 (764)
T KOG1063|consen 498 CELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTR 577 (764)
T ss_pred hhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEE
Confidence 000 012356789999999999999999999998754 5999999998888889999988887
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc----cccccCcccCEEEEEEcCCC
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDG 483 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg 483 (500)
+ +|||||++|++.|.|.++.+|....... ....+.|.+.|++++|+||+
T Consensus 578 l---------------------------~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 578 L---------------------------AFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred E---------------------------EECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 7 5699999999999999999998754322 23367899999999999999
Q ss_pred CEEEEEeCCCcEEEec
Q 010816 484 EKVASGGKDRVLKLWM 499 (500)
Q Consensus 484 ~~l~s~~~D~~v~iW~ 499 (500)
+++||+|.|++|++|.
T Consensus 631 ~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWE 646 (764)
T ss_pred ceeEEecCCceEEEEe
Confidence 9999999999999995
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1e-30 Score=222.85 Aligned_cols=286 Identities=26% Similarity=0.440 Sum_probs=236.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-------cccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN-------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
+...-+.|..|+|||++|++|+.||.|.+||..+|+..+. .+.-+...|.++.|+. +...+++|+.||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSR-----DsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSR-----DSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecc-----cHHHhhccCcCC
Confidence 4456688999999999999999999999999999875432 2334677889998865 456799999999
Q ss_pred cEEEEECCCCeEEEEec-CccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeec
Q 010816 221 DARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTG 298 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 298 (500)
.|++|.+++++|+..|. +|+..|+|+.|+.|+ .+++++.|.++|+--+..|++++++++|...|+...+.++
T Consensus 286 kIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d------ 359 (508)
T KOG0275|consen 286 KIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD------ 359 (508)
T ss_pred cEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC------
Confidence 99999999999998886 899999999999876 6999999999999999999999999999999988877765
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeecccCcEEEEEECC-CCCEEE
Q 010816 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSP-DGQWVA 376 (500)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~la 376 (500)
+..++++|.||+|++|+........ .+..+....|+++-.-| +...++
T Consensus 360 ------------------------------G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 360 ------------------------------GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred ------------------------------CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEE
Confidence 4679999999999999976543322 22334566788888887 557888
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 377 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw 456 (500)
.+-..++|++-++ .|+.++.+..-+..--. + -....||.|.++++.+.|+.++.|
T Consensus 410 VCNrsntv~imn~-qGQvVrsfsSGkREgGd--------------F----------i~~~lSpkGewiYcigED~vlYCF 464 (508)
T KOG0275|consen 410 VCNRSNTVYIMNM-QGQVVRSFSSGKREGGD--------------F----------INAILSPKGEWIYCIGEDGVLYCF 464 (508)
T ss_pred EEcCCCeEEEEec-cceEEeeeccCCccCCc--------------e----------EEEEecCCCcEEEEEccCcEEEEE
Confidence 8888999999887 46666666432111000 0 001358999999999999999999
Q ss_pred ECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 457 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 457 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...++++...++.|...|..+.-+|..+.||+=++||.+++|.
T Consensus 465 ~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 465 SVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999999999999999999999999999999999995
No 78
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=3.5e-28 Score=235.65 Aligned_cols=253 Identities=17% Similarity=0.266 Sum_probs=195.8
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-------------EEecCCCCCEEEEEEcC-CCCEEEEEeCCC
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------------FKCTGHKNWVLCIAWSA-DGKHLVSGSKAG 172 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-------------~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~ 172 (500)
|-..|....+++++..+++++.+..+..|+...+..+ ..+.+|.+.|.+++|+| ++++|++|+.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4455666777888777888888888888876543222 13568999999999999 889999999999
Q ss_pred eEEEEeCCCCCc------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816 173 ELQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (500)
Q Consensus 173 ~i~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 246 (500)
+|++||+.++.. ....+.+|...|.++.|+|.. ...+++|+.|++|+|||+++++.+..+.+|...|.++
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~----~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA----MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC----CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 999999976532 123467899999999998842 2479999999999999999999999999999999999
Q ss_pred EeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 247 KWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 247 ~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
+|++++ .|++++.|++|++||+++++.+..+..|.... ..+.+.++
T Consensus 175 a~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~-------------------------------- 222 (493)
T PTZ00421 175 EWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKR-------------------------------- 222 (493)
T ss_pred EEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCC--------------------------------
Confidence 999987 58899999999999999999888887776532 23333322
Q ss_pred cCCCCcEEEEe----eCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEEEE
Q 010816 325 KGNAPERLVSG----SDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 325 ~~~~~~~~~s~----s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~~~ 398 (500)
...++++ +.|+.|++||++....+...... +...+....|++++++|++|+ .|+.|++||+.+++++..+
T Consensus 223 ----~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 223 ----KDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred ----CCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 1234443 35899999998765544443332 234566678999999999887 4999999999998876654
Q ss_pred e
Q 010816 399 R 399 (500)
Q Consensus 399 ~ 399 (500)
.
T Consensus 299 ~ 299 (493)
T PTZ00421 299 S 299 (493)
T ss_pred e
Confidence 4
No 79
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.4e-28 Score=227.59 Aligned_cols=243 Identities=41% Similarity=0.700 Sum_probs=207.4
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (500)
Q Consensus 145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i 224 (500)
.+++|.++|.+++|+|++++|++++.||.+++|+..+++.. ..+..|...+..+.|.|. ...+++++.|+.+++
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-~~~~~~~~~i~~~~~~~~-----~~~l~~~~~~~~i~i 77 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-RTLKGHTGPVRDVAASAD-----GTYLASGSSDKTIRL 77 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-EEEecCCcceeEEEECCC-----CCEEEEEcCCCeEEE
Confidence 45689999999999999999999999999999999877543 345678888888888763 357999999999999
Q ss_pred EECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCC
Q 010816 225 WDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHT 303 (500)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 303 (500)
||+..++.+..+..|...+.++.|.+++. +++++.|+.|++||+.+++....
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------------------------- 130 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT--------------------------- 130 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEE---------------------------
Confidence 99998888888889999999999998764 55555699999999875433221
Q ss_pred CCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816 304 GKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS 383 (500)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~ 383 (500)
+..|...+.+++|+|++.++++++.|+.
T Consensus 131 ----------------------------------------------------~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 131 ----------------------------------------------------LRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred ----------------------------------------------------eccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 1135567899999999999999988999
Q ss_pred EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
|++||+.+++.+..+..|...+.++ .|+|+++.+++++.|+.|++||++.++.
T Consensus 159 i~i~d~~~~~~~~~~~~~~~~i~~~---------------------------~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 159 IKLWDLRTGKCVATLTGHTGEVNSV---------------------------AFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred EEEEEccccccceeEecCccccceE---------------------------EECCCcCEEEEecCCCcEEEEECCCCce
Confidence 9999999998888888888777766 5689999999999999999999999888
Q ss_pred cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+.+|...+.++.|+|++.++++++.|+.|++|+
T Consensus 212 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~ 247 (289)
T cd00200 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWD 247 (289)
T ss_pred ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEE
Confidence 888888999999999999999999999899999997
No 80
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.97 E-value=4.4e-29 Score=232.99 Aligned_cols=279 Identities=25% Similarity=0.440 Sum_probs=226.1
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEE-EEEcC-CCCEEEEEeCCCeEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLC-IAWSA-DGKHLVSGSKAGELQ 175 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~-v~~s~-~~~~l~s~~~d~~i~ 175 (500)
+...+.||...|..+++.+.. .++++|.||++++|+-..+.- ...+.+|.+.|.+ ++|-+ ++..|++|+.|.+|.
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~ 84 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTII 84 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEE
Confidence 345688999999999876654 789999999999999755433 2456678888887 88875 445699999999999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (500)
+|.+....+.. .+.+|+..|.+++-. .+ ..+++||+|.++++|-. +++...+.+|+..|.++..-+++.++
T Consensus 85 v~~~~~~~P~~-~LkgH~snVC~ls~~-----~~-~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~~~v 155 (745)
T KOG0301|consen 85 VFKLSQAEPLY-TLKGHKSNVCSLSIG-----ED-GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPENTYV 155 (745)
T ss_pred EEecCCCCchh-hhhccccceeeeecC-----Cc-CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCCcEE
Confidence 99998877654 689999999998632 12 35899999999999964 56777799999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
||+.|.+|++|.- ++.++++.+|..-|+.+++-++ ..|+++
T Consensus 156 TgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~-------------------------------------~~flSc 196 (745)
T KOG0301|consen 156 TGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD-------------------------------------SHFLSC 196 (745)
T ss_pred eccCcceeeeccC--CchhhhhccchhheeeeEEecC-------------------------------------CCeEee
Confidence 9999999999974 7889999999999999987653 358999
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
+.||.|++|++. ......+.+|+.-|.+++..+++..++++++|+++++|+.. ++...+.-....++++.+
T Consensus 197 sNDg~Ir~w~~~--ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~----- 267 (745)
T KOG0301|consen 197 SNDGSIRLWDLD--GEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV----- 267 (745)
T ss_pred cCCceEEEEecc--CceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEE-----
Confidence 999999999973 34566788999999999988889999999999999999876 555544433334444422
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
-++|+ +++|++||.||||...
T Consensus 268 ----------------------L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 268 ----------------------LLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred ----------------------eeCCC-EEEeccCceEEEEEec
Confidence 23444 7889999999999765
No 81
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=6.2e-29 Score=221.53 Aligned_cols=287 Identities=25% Similarity=0.408 Sum_probs=221.6
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-----------------EEe-cCCCCCEEEEEEcCCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----------------FKC-TGHKNWVLCIAWSADGK 163 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-----------------~~~-~~h~~~v~~v~~s~~~~ 163 (500)
..+..|.-+|.+++++|+.++.++++.|++|.-|++.++... ..- ++|...+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 345679999999999999999999999999999998765422 001 37888999999999999
Q ss_pred EEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (500)
Q Consensus 164 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v 243 (500)
+||+|+.|..|.||+.++.+.+. .+.+|.+.|.+++|.. ....+.+++.|++|++|++.....+.++.||...|
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~-~~~ghr~~V~~L~fr~-----gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVK-VFKGHRGAVSSLAFRK-----GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred EEEecCCCceEEEecCcccchhh-cccccccceeeeeeec-----CccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 99999999999999999998765 4789999999999864 23479999999999999999888888899999999
Q ss_pred EEEEeCCCCeEEE-EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 244 TCVKWGGDGVIYT-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 244 ~~~~~~~~~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
..+.-..-+..+| |+.|+++++|++..- ..-.+.++...+.++++-.
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In------------------------------- 337 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFIN------------------------------- 337 (479)
T ss_pred eeechhcccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEec-------------------------------
Confidence 9988766666666 559999999999542 2234566776777776532
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-----------ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----------HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-----------h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~ 391 (500)
.++|++||+||.|.+|++...+.....-.. +..+|++|+..|...++|+|+.+|.||+|.+.+
T Consensus 338 ------~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 338 ------DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred ------ccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 357999999999999998655433222222 234899999999999999999999999999887
Q ss_pred Cc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEE
Q 010816 392 GK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWD 457 (500)
Q Consensus 392 ~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd 457 (500)
|- .+.. ++.+ ....++..++|+++|+.+++| +....+--|-
T Consensus 412 g~r~i~~-------l~~l------------------s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 412 GLRAINL-------LYSL------------------SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred Cccccce-------eeec------------------ccccEEEEEEEccCCCEEEEecccccccceee
Confidence 72 1111 1111 122334445788999955554 5565555553
No 82
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3.7e-30 Score=222.57 Aligned_cols=279 Identities=19% Similarity=0.355 Sum_probs=216.5
Q ss_pred EEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 144 FKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
..+.||.+.|.|++=+|.. ..++||+.||.|++||+.+..+. ..+.+|.+.|.++.+.. ..+++++.|.+|
T Consensus 60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~-~~f~AH~G~V~Gi~v~~-------~~~~tvgdDKtv 131 (433)
T KOG0268|consen 60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECI-RTFKAHEGLVRGICVTQ-------TSFFTVGDDKTV 131 (433)
T ss_pred hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhh-heeecccCceeeEEecc-------cceEEecCCcce
Confidence 4567999999999999986 78999999999999999876554 46889999999998653 469999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 223 RIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
+.|-+... .+.++.+ ...+..+.-.. +..++|+|. .|.|||......++.+.-....+.++.++|.
T Consensus 132 K~wk~~~~-p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpv--------- 198 (433)
T KOG0268|consen 132 KQWKIDGP-PLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPV--------- 198 (433)
T ss_pred eeeeccCC-cceeeec-cccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCC---------
Confidence 99987653 3333222 12233333221 345677766 4888999887778777766666777776653
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
....|+++..|+.|.++|++........... -.-+.++|+|.+-.+++|++|
T Consensus 199 --------------------------ETsILas~~sDrsIvLyD~R~~~Pl~KVi~~--mRTN~IswnPeafnF~~a~ED 250 (433)
T KOG0268|consen 199 --------------------------ETSILASCASDRSIVLYDLRQASPLKKVILT--MRTNTICWNPEAFNFVAANED 250 (433)
T ss_pred --------------------------cchheeeeccCCceEEEecccCCccceeeee--ccccceecCccccceeecccc
Confidence 1345788889999999999876554433322 335789999988899999999
Q ss_pred CcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 382 KSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 382 g~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
..++.||.+.. +.+.++++|...|.++ .|||.|+-+++||.|.+|+||....
T Consensus 251 ~nlY~~DmR~l~~p~~v~~dhvsAV~dV---------------------------dfsptG~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 251 HNLYTYDMRNLSRPLNVHKDHVSAVMDV---------------------------DFSPTGQEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred ccceehhhhhhcccchhhcccceeEEEe---------------------------ccCCCcchhccccccceEEEeecCC
Confidence 99999998864 5678889999998888 5699999999999999999999876
Q ss_pred ccccccccCcc---cCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 461 QKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 461 ~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+...... |. ..|++|.||-|.++++|||+|+.||+|.+
T Consensus 304 ~~SRdiY--htkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 304 GHSRDIY--HTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred Ccchhhh--hHhhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 5543321 22 35899999999999999999999999964
No 83
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=7.6e-30 Score=228.67 Aligned_cols=255 Identities=25% Similarity=0.445 Sum_probs=201.5
Q ss_pred eEEecccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCC
Q 010816 93 RIRPVNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKA 171 (500)
Q Consensus 93 ~~~~~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d 171 (500)
.++....|.+++.||..+|.+++|+++|..+.|+|.|+.+++||+++|+++..+. -...+.|+.|.||+ +.+++|+.|
T Consensus 243 ~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd 321 (503)
T KOG0282|consen 243 NVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSD 321 (503)
T ss_pred EEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCC
Confidence 3445578999999999999999999999999999999999999999999987764 24568999999998 889999999
Q ss_pred CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCC
Q 010816 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG 250 (500)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~ 250 (500)
+.|+.||+++++.+. ....|-+.|..+.|.+ .+++|++.+.|++++||+.+....+.... .+.-...|+...|
T Consensus 322 ~ki~~wDiRs~kvvq-eYd~hLg~i~~i~F~~-----~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P 395 (503)
T KOG0282|consen 322 KKIRQWDIRSGKVVQ-EYDRHLGAILDITFVD-----EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP 395 (503)
T ss_pred CcEEEEeccchHHHH-HHHhhhhheeeeEEcc-----CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC
Confidence 999999999998543 5677888899998876 45799999999999999998876554332 1223345666666
Q ss_pred CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 251 DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 251 ~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
++ .++.-+.|+.|.+|.+...-
T Consensus 396 ~~~~~~aQs~dN~i~ifs~~~~~--------------------------------------------------------- 418 (503)
T KOG0282|consen 396 NGKWFAAQSMDNYIAIFSTVPPF--------------------------------------------------------- 418 (503)
T ss_pred CCCeehhhccCceEEEEeccccc---------------------------------------------------------
Confidence 54 56666777777777532100
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
.......+.||.. --..+.|||||.+|++|+.||.+.+||.++-+++..+++|.+++..
T Consensus 419 -------------------r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~ 479 (503)
T KOG0282|consen 419 -------------------RLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIG 479 (503)
T ss_pred -------------------ccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEE
Confidence 0011223334432 2346799999999999999999999999999999999999998877
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEE
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd 457 (500)
+ .|+|. ..-+|+++.||.|++||
T Consensus 480 v---------------------------~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 480 V---------------------------DWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred E---------------------------EecCCCcceeEecccCceeEecC
Confidence 7 45664 35799999999999996
No 84
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.3e-27 Score=232.57 Aligned_cols=251 Identities=18% Similarity=0.305 Sum_probs=187.5
Q ss_pred EeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcc-------cccccCcccceE
Q 010816 126 GSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-------GNPLSGHKKWIT 197 (500)
Q Consensus 126 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~-------~~~~~~~~~~v~ 197 (500)
|+.++.|++|+.....++..+.+|.+.|.+++|+|+ +.+|++|+.|++|++||+.++... ...+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 567899999999888888889999999999999997 789999999999999999764321 123578999999
Q ss_pred EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEE
Q 010816 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
++.|+|.. ...+++++.|++|+|||+++++.+..+. |...|.+++|+++|. |++++.|+.|++||+++++.+..
T Consensus 130 sVaf~P~g----~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~t 204 (568)
T PTZ00420 130 IIDWNPMN----YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASS 204 (568)
T ss_pred EEEECCCC----CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEE
Confidence 99999843 1356799999999999999988777665 567899999999885 56678899999999999887766
Q ss_pred eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (500)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~ 356 (500)
+.+|...+..
T Consensus 205 l~gH~g~~~s---------------------------------------------------------------------- 214 (568)
T PTZ00420 205 FHIHDGGKNT---------------------------------------------------------------------- 214 (568)
T ss_pred EecccCCcee----------------------------------------------------------------------
Confidence 6554321110
Q ss_pred ecccCcEEEEEECCCCCEEEEEeCCC----cEEEEeCCC-CceEEEEeCCc--ccEEEEEeeeeeeecCCCCceeeeecc
Q 010816 357 TGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTT-GKFVAVFRGHV--GPVYQIRFELIYCFRYPSNFYCVVDMS 429 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs~Dg----~i~lwd~~~-~~~~~~~~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~ 429 (500)
..+....|++++.+|++++.|+ .|+|||++. ++.+..+..+. +.+...
T Consensus 215 ----~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~--------------------- 269 (568)
T PTZ00420 215 ----KNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPH--------------------- 269 (568)
T ss_pred ----EEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEe---------------------
Confidence 0122345778999999888774 799999985 45554433221 211111
Q ss_pred ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc--cccCcccCEEEEEEcCCC
Q 010816 430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDG 483 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg 483 (500)
...++|.++++|+.|++|++|++..+.... .+. +..++.+++|.|+.
T Consensus 270 ------~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 270 ------YDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred ------eeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEcccc
Confidence 124568899999999999999998764322 222 44667889999963
No 85
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.1e-27 Score=198.43 Aligned_cols=276 Identities=24% Similarity=0.352 Sum_probs=220.5
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEe
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWD 178 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd 178 (500)
+.+.+|.+.|.+++|+-+|..||+|+.|+++++|+++..+... ...+|.+.|-.++|.|. .+++++++.|++|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 4567899999999999999999999999999999998765443 35689999999999874 67999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~ 257 (500)
.+.+++..... .+..-.-+.|.| ++.+++.++.|..|...|.++.+.+.... ....+.-+.|+.++ .++..
T Consensus 94 ~r~~k~~~~i~--~~~eni~i~wsp-----~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt 165 (313)
T KOG1407|consen 94 IRSGKCTARIE--TKGENINITWSP-----DGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLT 165 (313)
T ss_pred eccCcEEEEee--ccCcceEEEEcC-----CCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEe
Confidence 99988754322 122224567877 45789999999999999999877655432 23445566676444 55555
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
..-|+|.|-....-+.++.++.|.....++.++|+ +.+|++|+.
T Consensus 166 ~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~------------------------------------GryfA~GsA 209 (313)
T KOG1407|consen 166 NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPD------------------------------------GRYFATGSA 209 (313)
T ss_pred cCCceEEEEeccccccccccccCCcceEEEEECCC------------------------------------CceEeeccc
Confidence 55699999988888889999999887778888775 457999999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
|..+.+||+..- .....+..+.-+|+.++||.||++||+||+|..|-|=++++|..+...+ ++++.+.+
T Consensus 210 DAlvSLWD~~EL-iC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tV--------- 278 (313)
T KOG1407|consen 210 DALVSLWDVDEL-ICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTV--------- 278 (313)
T ss_pred cceeeccChhHh-hhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeE---------
Confidence 999999997532 2344567788999999999999999999999999999999998776544 45555555
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d 450 (500)
+|+|...+||-+..|
T Consensus 279 ------------------AWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 279 ------------------AWHPKRPLLAYACDD 293 (313)
T ss_pred ------------------EecCCCceeeEEecC
Confidence 789999999988765
No 86
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-28 Score=219.31 Aligned_cols=291 Identities=24% Similarity=0.386 Sum_probs=230.9
Q ss_pred EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCC
Q 010816 132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH-LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPC 210 (500)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~-l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 210 (500)
++-|+-.+..++. .-.+.|.+++|+|...+ +|+. ..-.++||+..+....+ .+..-+..+.++.|. .++
T Consensus 11 ~~~w~~~~~~~~~---ke~~~vssl~fsp~~P~d~aVt-~S~rvqly~~~~~~~~k-~~srFk~~v~s~~fR-----~DG 80 (487)
T KOG0310|consen 11 IRYWRQETFPPVH---KEHNSVSSLCFSPKHPYDFAVT-SSVRVQLYSSVTRSVRK-TFSRFKDVVYSVDFR-----SDG 80 (487)
T ss_pred chhhhhhcccccc---cccCcceeEecCCCCCCceEEe-cccEEEEEecchhhhhh-hHHhhccceeEEEee-----cCC
Confidence 4456544443332 23467999999996543 3333 34679999987654332 344456778888775 377
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~ 288 (500)
+.++.|...|.|+|+|..+...+..+.+|+.+|..+.|++.+ .+++|+.|+.+++||+.++.....+.+|...|++.+
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 889999999999999988877788899999999999999854 577899999999999999887668899999999998
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~ 368 (500)
++|. .+..+++||.||.|++||.+... .......|..+|..+.|
T Consensus 161 ~~~~-----------------------------------~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~vl~ 204 (487)
T KOG0310|consen 161 ISPA-----------------------------------NDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESVLA 204 (487)
T ss_pred cccC-----------------------------------CCeEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeEEE
Confidence 8764 23468999999999999988765 33344578999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816 369 SPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (500)
Q Consensus 369 sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 447 (500)
-|.|..+|+++. ..|++||+.+|. .+.....|...|+++++ ..+++.|++|
T Consensus 205 lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l---------------------------~s~~~rLlS~ 256 (487)
T KOG0310|consen 205 LPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRL---------------------------ASDSTRLLSG 256 (487)
T ss_pred cCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEe---------------------------ecCCceEeec
Confidence 999999998864 579999999654 45555569999999865 4578999999
Q ss_pred ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 448 s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+.|+.|++||+..-+.+..+. -.++|.+++.+||++.++.|-.||.+-+
T Consensus 257 sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSI 305 (487)
T ss_pred ccccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeee
Confidence 999999999988888777664 4578999999999999999999997754
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=5.7e-28 Score=204.30 Aligned_cols=258 Identities=20% Similarity=0.290 Sum_probs=194.0
Q ss_pred cccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCC-cee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 108 TEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQ-TPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 108 ~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~-~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+.|.+|+||| ...+++.||.|++||+|++... ... .....|.++|.+++|+.||..+++|+.|+.+++||+.+++.
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV 106 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence 67899999999 4566778999999999999763 221 33457999999999999999999999999999999999965
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~ 264 (500)
. .+..|.++|..+.|-+... ...+++||+|+++|.||.+....+.++.- ...|.++..- ...++.+..++.|.
T Consensus 107 ~--~v~~Hd~pvkt~~wv~~~~---~~cl~TGSWDKTlKfWD~R~~~pv~t~~L-PeRvYa~Dv~-~pm~vVata~r~i~ 179 (347)
T KOG0647|consen 107 S--QVAAHDAPVKTCHWVPGMN---YQCLVTGSWDKTLKFWDTRSSNPVATLQL-PERVYAADVL-YPMAVVATAERHIA 179 (347)
T ss_pred e--eeeecccceeEEEEecCCC---cceeEecccccceeecccCCCCeeeeeec-cceeeehhcc-CceeEEEecCCcEE
Confidence 3 4678999999999976432 24689999999999999998877765532 2344444332 23677889999999
Q ss_pred EEeCCCCeeE-EEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816 265 VWETTQGKLI-RELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (500)
Q Consensus 265 lwd~~~~~~~-~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~ 342 (500)
+|+++.+... +..+ .-.-.+++++..++ .+..+.|+-.|.+.
T Consensus 180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d------------------------------------~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 180 VYNLENPPTEFKRIESPLKWQTRCVACFQD------------------------------------KDGFALGSIEGRVA 223 (347)
T ss_pred EEEcCCCcchhhhhcCcccceeeEEEEEec------------------------------------CCceEeeeecceEE
Confidence 9999766322 2211 12233566665543 23457888888888
Q ss_pred EEcCCCCC-CCceeeeccc---------CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 343 LWEPAVSK-QPKTRMTGHQ---------QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 343 ~wd~~~~~-~~~~~~~~h~---------~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
+..+.... .....+..|. ..|++++|+|.-..|+|++.||++..||-.....+...+.|..+|.+-
T Consensus 224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc 299 (347)
T KOG0647|consen 224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCC 299 (347)
T ss_pred EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCcccee
Confidence 87665432 2223344554 248899999999999999999999999988877777778888888766
No 88
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=1.5e-27 Score=223.16 Aligned_cols=323 Identities=17% Similarity=0.312 Sum_probs=248.9
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCC-----------CCEEEEEeCCCeEEE
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSAD-----------GKHLVSGSKAGELQC 176 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~-----------~~~l~s~~~d~~i~~ 176 (500)
-.++.|+|...+|...-.|..+.|||+.+...+ ..+-.|...|+.+.--|. ..-+++|+.|++||+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 347889999999999999999999999864432 334468888877766541 125789999999999
Q ss_pred EeCCCCCc----ccccc--------------------------------cCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 177 WDPQTGKP----SGNPL--------------------------------SGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 177 wd~~~~~~----~~~~~--------------------------------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
||+..+.. .+.++ -.....+.+++.+ +++..+++|..-|
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-----p~gqhLAsGDr~G 481 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-----PDGQHLASGDRGG 481 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-----CCcceecccCccC
Confidence 99875211 00000 0111234444443 4667899999999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCccee
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
++++||+..-..+..+.+|...|.|+.|+.. .+|++++.|.-|.+||.... .+++++.+|...|+++.|...+
T Consensus 482 nlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~g-- 559 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNG-- 559 (1080)
T ss_pred ceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecC--
Confidence 9999999988877778899999999999853 36899999999999998643 5678889999999998875431
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-----cCcEEEEEECC
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----QQLVNHVYFSP 370 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-----~~~v~~l~~sp 370 (500)
....+++++.|..+.+ +..........+..| ...+..++..|
T Consensus 560 --------------------------------ln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 560 --------------------------------LNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred --------------------------------CceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCC
Confidence 1235778888877653 322211111112222 23578899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 447 (500)
+.+++++++.|+.|+|||+++|+.++.|+| |.+..-.+ ...|.|-++|+.
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv---------------------------~lDPSgiY~atS 659 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV---------------------------ILDPSGIYLATS 659 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEE---------------------------EECCCccEEEEe
Confidence 999999999999999999999999999987 44444444 347999999999
Q ss_pred ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 448 SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 448 s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
..|+++-++|..+++++..+.||...|+.+.|.+|-+.|++++.||-|.||..
T Consensus 660 csdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 660 CSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred ecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999963
No 89
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.6e-27 Score=201.59 Aligned_cols=273 Identities=18% Similarity=0.275 Sum_probs=214.1
Q ss_pred CCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCC-CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816 148 GHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (500)
Q Consensus 148 ~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw 225 (500)
..++.|.+|+|||. ..+++++|.|++||+|+++. |.........|.++|.+++|+. ++.++++|+.|+.+++|
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsd-----dgskVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSD-----DGSKVFSGGCDKQAKLW 99 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEcc-----CCceEEeeccCCceEEE
Confidence 35788999999994 45666899999999999986 5655556778999999999975 55689999999999999
Q ss_pred ECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 226 DVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
|+.+++ +..+..|..+|.++.|-+.. .|+||++|.+|+.||.+....+.++.-.+ .+.+..+
T Consensus 100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv------------- 164 (347)
T KOG0647|consen 100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV------------- 164 (347)
T ss_pred EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc-------------
Confidence 999994 55678899999999997543 58999999999999999888777665322 2322221
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEECCCCCEEEEEeCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
....++.+..++.|.++++........... .-.-.++||+..+|....|.|+-+
T Consensus 165 -------------------------~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 165 -------------------------LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred -------------------------cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeec
Confidence 123577888899999999865543322221 223458899999988888999999
Q ss_pred CcEEEEeCCCC--ceEEEEeCCccc------EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816 382 KSIKLWNGTTG--KFVAVFRGHVGP------VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (500)
Q Consensus 382 g~i~lwd~~~~--~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v 453 (500)
|.+-+-.+..+ +.-.+|+.|... ||.+ ..++|+|.-..|++++.||+.
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV------------------------Nsi~FhP~hgtlvTaGsDGtf 275 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV------------------------NSIAFHPVHGTLVTAGSDGTF 275 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEe------------------------cceEeecccceEEEecCCceE
Confidence 99999988876 444567777531 3322 234789998999999999999
Q ss_pred EEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816 454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 489 (500)
.+||-.....++..+-|..+|++.+|+.+|..+|-+
T Consensus 276 ~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 276 SFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence 999998888888888899999999999999999865
No 90
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=9e-27 Score=221.84 Aligned_cols=395 Identities=19% Similarity=0.275 Sum_probs=272.6
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQC 176 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~ 176 (500)
++...++.++.+.|+++.-+|-=..+|.|..+|+|.|++++..+.+..++...+.|++++|..||. .+++|+..|.+.+
T Consensus 192 ~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 192 GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 456678899999999999999999999999999999999999999888875569999999999986 5567777899999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEEEeCC-C
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGG-D 251 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~-~ 251 (500)
||++..+........|...+....|.| .+..+++++.|..+++|=..++ ..+....||..+-.|+.|.. +
T Consensus 272 wDLe~kkl~~v~~nah~~sv~~~~fl~-----~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~ 346 (910)
T KOG1539|consen 272 WDLEKKKLINVTRNAHYGSVTGATFLP-----GEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQ 346 (910)
T ss_pred EEcCCCeeeeeeeccccCCcccceecC-----CCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccC
Confidence 999988777667778988888888776 3457999999999998855433 34566679999999999973 4
Q ss_pred C-eEEEEeCCCeEEEEeCCCCeeEEE------------------eecCCceEEEEEecCcce-----ee--------ecc
Q 010816 252 G-VIYTGSQDCTIKVWETTQGKLIRE------------------LKGHGHWVNSLALSTEYA-----LR--------TGA 299 (500)
Q Consensus 252 ~-~l~t~~~dg~i~lwd~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~-----~~--------~~~ 299 (500)
+ .+.+++.|++.+.+++..-..-+. .+..-.+|..+++..... +. ...
T Consensus 347 g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~t 426 (910)
T KOG1539|consen 347 GHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYT 426 (910)
T ss_pred cEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEE
Confidence 4 588999999999998643211000 000112344444332110 00 000
Q ss_pred ccC----CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEEEEEECCCCC
Q 010816 300 FDH----TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 300 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~~l~~sp~g~ 373 (500)
++. .|.....+...++.............++..+.|+..|+|-++++..+...... -..|...|+.++...-++
T Consensus 427 W~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~ 506 (910)
T KOG1539|consen 427 WNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNR 506 (910)
T ss_pred EeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCc
Confidence 000 01111111111110000001112345667788999999999998765432222 357999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee---cCCCCce------------eeeeccccceeeEEc
Q 010816 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF---RYPSNFY------------CVVDMSCCMSLYSWS 438 (500)
Q Consensus 374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~~~~~~------------~~~~~~~~~~~~~~s 438 (500)
.+++++.||.++.||..+..++..++-.. ++..+........ ....-.. -.......++.+.||
T Consensus 507 ~~vsa~~~Gilkfw~f~~k~l~~~l~l~~-~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS 585 (910)
T KOG1539|consen 507 LLVSAGADGILKFWDFKKKVLKKSLRLGS-SITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFS 585 (910)
T ss_pred eEEEccCcceEEEEecCCcceeeeeccCC-CcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeC
Confidence 99999999999999999887666554211 1111111100000 0000000 112234457778999
Q ss_pred CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC-CcEEEec
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-~~v~iW~ 499 (500)
|||++|++++.|++||+||+.++.++..+. -..+..++.|||+|.+|||+..| .-|++|.
T Consensus 586 ~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 586 PDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred CCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 999999999999999999999998876553 34567899999999999999999 6799994
No 91
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=221.50 Aligned_cols=384 Identities=18% Similarity=0.260 Sum_probs=283.3
Q ss_pred EEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 111 VLSVAFSPDG--RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 111 V~~~~~sp~~--~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
|+++ +||.. +.++.|+.+|.++||++.+++.++.++++...|+++.=+|-=+.+|.|..+|+|.+++++.++.+..
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s- 239 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS- 239 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-
Confidence 6665 56764 5689999999999999999999999999999999999999888999999999999999998875532
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCC-CeEEEEeCCCeEEEE
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGD-GVIYTGSQDCTIKVW 266 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~l~t~~~dg~i~lw 266 (500)
+....+.|++++|.... ...+++|...|.+-+||++..+....+. .|...|....|-+. ..+++++.|+.+++|
T Consensus 240 Fk~d~g~VtslSFrtDG----~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDG----NPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEccccceeEEEeccCC----CeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 33235889999987532 2478889999999999999988776655 78788888887654 478899999999988
Q ss_pred eCC--CC--eeEEEeecCCceEEEEEecC--cceeeeccccCCCCCCCCHHHHHHHHHHhh---------hh-----hc-
Q 010816 267 ETT--QG--KLIRELKGHGHWVNSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERY---------NK-----IK- 325 (500)
Q Consensus 267 d~~--~~--~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-----~~- 325 (500)
=.. .| +.++...+|..+-.++.+.. ...+.....|.+-+.+....+.....+... +. ..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 443 34 56777778888887777652 234445555555444443333322222110 00 00
Q ss_pred -------------CCCCcEEEEeeCCCeEEEEcCCCCCCCceee-----ecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 326 -------------GNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 326 -------------~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-----~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
..-.+.+++.-.+...+.|+.+....-...+ ..-...+++++.++-|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 0001223344456678889876543222222 1223568999999999999999999999999
Q ss_pred eCCCCceEEEE---eCCcccEEEEEeeeeeeecC------CCC--------ceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816 388 NGTTGKFVAVF---RGHVGPVYQIRFELIYCFRY------PSN--------FYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (500)
Q Consensus 388 d~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~------~~~--------~~~~~~~~~~~~~~~~s~~~~~l~s~s~d 450 (500)
++++|-....| ..|.++|..+.......... ... .....+..+++....++....++|.+..|
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCc
Confidence 99999988888 58999999998743221111 111 12223344555666667777889999999
Q ss_pred CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 451 STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 451 ~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
-.|+++|..+.+..+.+.||.++|++++|||||+||++++.|++||+|+.
T Consensus 556 f~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999984
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=209.41 Aligned_cols=282 Identities=22% Similarity=0.349 Sum_probs=237.3
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
...+.++...|....++||+.|.++.++|...++.+..++||...|+.+.|+|+...+++++.|..|++|....... ..
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-PT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-cc
Confidence 35788999999888999999999999999999999999999999999999999999999999999999998765543 34
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--ccccEEEEEeCCCCe-EEEEeCCCeEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGV-IYTGSQDCTIK 264 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~-l~t~~~dg~i~ 264 (500)
....|..+|+.+..+| .+.+|++++.|++.-+.|++.+.++..... ....+++.+|+|||. +.+|..|+.++
T Consensus 298 ~~~~h~~~V~~ls~h~-----tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vk 372 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHP-----TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVK 372 (506)
T ss_pred ccccccccceeeeecc-----CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEE
Confidence 5678999999988765 557999999999999999999988766543 334689999999996 55789999999
Q ss_pred EEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 265 lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+||+..+..+..+.+|..+|.+++|+.+ +-.++++++|+.|++|
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsEN------------------------------------GY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSEN------------------------------------GYWLATAADDGSVKLW 416 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEeccC------------------------------------ceEEEEEecCCeEEEE
Confidence 9999999999999999999999999865 4579999999999999
Q ss_pred cCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (500)
Q Consensus 345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 422 (500)
|++..+............+.+++|.+.|.+|+.++.|=.|++++-.+ ..++..+..|.+....++|
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F------------ 484 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF------------ 484 (506)
T ss_pred EehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee------------
Confidence 99877665554444445799999999999999998887777776443 4556667777777666654
Q ss_pred eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
....++++++|.|...+++.+
T Consensus 485 ---------------g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 ---------------GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ---------------cccceEEeeccchhheEEeec
Confidence 556789999999999888854
No 93
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1e-27 Score=213.78 Aligned_cols=292 Identities=26% Similarity=0.366 Sum_probs=227.5
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc----------------cc-cCcccceEEEEeeeeec
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----------------PL-SGHKKWITGISWEPVHL 206 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------------~~-~~~~~~v~~~~~~~~~~ 206 (500)
.....|..++.|+.++|+++++++++.|++|.-|++.+|+.... .- .+|...+.+++.++
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~--- 212 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS--- 212 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC---
Confidence 34557999999999999999999999999999999988763311 01 26777777777554
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEE
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN 285 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~ 285 (500)
++++|++|+.|..|.||+..+.+.+.++.+|...|.+++|.. ...+++++.|++|++|++..-..+.++-+|...|.
T Consensus 213 --Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~ 290 (479)
T KOG0299|consen 213 --DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVL 290 (479)
T ss_pred --CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcccee
Confidence 778999999999999999999999999999999999999964 35799999999999999988888888889998888
Q ss_pred EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (500)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~ 364 (500)
.+.... .++.+ .|+.|+++++|++.. ..+..+.+|...+-
T Consensus 291 ~IdaL~-------------------------------------reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sid 331 (479)
T KOG0299|consen 291 GIDALS-------------------------------------RERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSID 331 (479)
T ss_pred eechhc-------------------------------------ccceEEeccccceeEEEeccc--cceeeeeCCCCCee
Confidence 876432 23344 466999999999843 33455678888999
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 444 (500)
|++|=. ...+++||.||.|.+|++.+.+.+.+.+...+-...+ ...+....++.++..|...++
T Consensus 332 cv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~---------------~~~~~~~Witsla~i~~sdL~ 395 (479)
T KOG0299|consen 332 CVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL---------------DPVNGNFWITSLAVIPGSDLL 395 (479)
T ss_pred eEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCc---------------cccccccceeeeEecccCceE
Confidence 999964 4579999999999999999988887665322111110 011112345666778999999
Q ss_pred EEEECCCcEEEEECCCc----cccccccCcccCEEEEEEcCCCCEEEEE-eCCCcEE
Q 010816 445 LSGSKDSTLKVWDIRTQ----KLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLK 496 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~----~~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~ 496 (500)
|+|+.+|.||+|.+..+ +++..++ -.+-|++|+|+++|++|++| |...++-
T Consensus 396 asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 396 ASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred EecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 99999999999998876 4455555 56789999999999977665 5544443
No 94
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4e-27 Score=200.54 Aligned_cols=303 Identities=21% Similarity=0.330 Sum_probs=203.3
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee----EEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEE
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQ 175 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~ 175 (500)
..+|+||.+.|++++|+.||++|||++.|++|+||++.+-... ....-..+-.+.+.|+||-+-+ +++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 4678999999999999999999999999999999998753211 0111112245789999996644 4555566899
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l 254 (500)
+|.....+.- ......+.|...++ -+.|...+..+-...++ +|
T Consensus 159 vyk~~K~~dG-------~~~~~~v~~D~~~f-----------------------------~~kh~v~~i~iGiA~~~k~i 202 (420)
T KOG2096|consen 159 VYKLVKKTDG-------SGSHHFVHIDNLEF-----------------------------ERKHQVDIINIGIAGNAKYI 202 (420)
T ss_pred EEEeeecccC-------CCCccccccccccc-----------------------------chhcccceEEEeecCCceEE
Confidence 9976533210 11111222211111 12355555555554444 68
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++++.|..|.+|++. |+.++.+......-...+++|+ +..+++
T Consensus 203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~------------------------------------GRFia~ 245 (420)
T KOG2096|consen 203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPD------------------------------------GRFIAV 245 (420)
T ss_pred EEecCCCcEEEEecC-CceeeeeccccccccceeeCCC------------------------------------CcEEEE
Confidence 899999999999998 8888777655444444555554 456777
Q ss_pred eeCCCeEEEEcCCCCC-------CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----CceEEEEeCCcc
Q 010816 335 GSDDFTMFLWEPAVSK-------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----GKFVAVFRGHVG 403 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~-------~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~ 403 (500)
++...-|++|.+...+ .....+.||+..|..++|||+...+++.|.||++||||..- ++--.+++.-..
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 7888889999864332 13346899999999999999999999999999999999652 111111111000
Q ss_pred cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc-CcccCEEEEEEcCC
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEVFAVDWSPD 482 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d 482 (500)
+. -.......-++.+|+|+.||.+. ...+++|..++++....+. .|...|.+++|++|
T Consensus 326 pl--------------------~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~ 384 (420)
T KOG2096|consen 326 PL--------------------HAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELEDIHSTTISSISYSSD 384 (420)
T ss_pred ch--------------------hhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHHHhhcCceeeEEecCC
Confidence 00 00000111346799999888654 4569999999987765553 48889999999999
Q ss_pred CCEEEEEeCCCcEEEe
Q 010816 483 GEKVASGGKDRVLKLW 498 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW 498 (500)
|++++|+|+ ..+|+.
T Consensus 385 g~~~atcGd-r~vrv~ 399 (420)
T KOG2096|consen 385 GKYIATCGD-RYVRVI 399 (420)
T ss_pred CcEEeeecc-eeeeee
Confidence 999999986 445553
No 95
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.1e-27 Score=221.76 Aligned_cols=242 Identities=31% Similarity=0.539 Sum_probs=208.5
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 185 (500)
+.+.|+++.|+++|.+||.|..+|.|.|||..+.+.+..+.+ |...|.+++|+ +..+.+|+.|+.|..+|++..+..
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~ 293 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHV 293 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhh
Confidence 478999999999999999999999999999999888888888 99999999997 678999999999999999987765
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEE--eCCC
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTG--SQDC 261 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~--~~dg 261 (500)
...+.+|...|.++.|++ +..++++|+.|..+.|||.........+..|.+.|-+++|+| .+.|++| +.|+
T Consensus 294 ~~~~~~H~qeVCgLkws~-----d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSP-----DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred hhhhhcccceeeeeEECC-----CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 556889999999999987 557899999999999999988888888999999999999997 5688885 4799
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-eeCCCe
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSDDFT 340 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~d~~ 340 (500)
+|++||..+|..+..+. .+..|.++.+++.+ .+.+.+ |-.++.
T Consensus 369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~-----------------------------------kEi~sthG~s~n~ 412 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKY-----------------------------------KELLSTHGYSENQ 412 (484)
T ss_pred EEEEEEcCCCcEecccc-cCCceeeEEEcCCC-----------------------------------CEEEEecCCCCCc
Confidence 99999999998887665 34568888887753 122333 445678
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
|.||+... ......+.+|...|..+++||||..+++|+.|.++++|++-..
T Consensus 413 i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 413 ITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred EEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 99999754 3456678999999999999999999999999999999998653
No 96
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3e-28 Score=214.11 Aligned_cols=249 Identities=26% Similarity=0.406 Sum_probs=195.0
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
+..++.||..+|..+.||||.++|++++.|..+++||+.++.....+. +|...+.+++|.|||..+++|+.|++|.-||
T Consensus 261 l~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred eeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 457889999999999999999999999999999999999998766543 4678999999999999999999999999999
Q ss_pred CCCCCcccccccCc-ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE
Q 010816 179 PQTGKPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT 256 (500)
Q Consensus 179 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t 256 (500)
..... .. ...+- ...|.+++. ..++..+++...|..+++++.++..+..... ...+|++...+.++. +++
T Consensus 341 lDgn~-~~-~W~gvr~~~v~dlai-----t~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~Lv 412 (519)
T KOG0293|consen 341 LDGNI-LG-NWEGVRDPKVHDLAI-----TYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALV 412 (519)
T ss_pred CCcch-hh-cccccccceeEEEEE-----cCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEE
Confidence 86332 11 11111 133555543 3477889999999999999988766554332 345789999998885 455
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
--.+..+++||+...+.++.+.+|...-.-+.- .+.+.+...+++||
T Consensus 413 nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS---------------------------------CFgg~~~~fiaSGS 459 (519)
T KOG0293|consen 413 NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS---------------------------------CFGGGNDKFIASGS 459 (519)
T ss_pred EcccCeeEEeecchhhHHHHhhcccccceEEEe---------------------------------ccCCCCcceEEecC
Confidence 668999999999988888888777653211110 11223346789999
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCC
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~ 390 (500)
.|+.|+||+.. ...+...+.||...|+||+|+| +..++|++|.||+||||...
T Consensus 460 ED~kvyIWhr~-sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 460 EDSKVYIWHRI-SGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCceEEEEEcc-CCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999955 4457788999999999999999 56899999999999999765
No 97
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.2e-26 Score=197.05 Aligned_cols=278 Identities=19% Similarity=0.296 Sum_probs=206.7
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
.+.|.++.|+|.+..|+.+++||++++||+........+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++...
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-- 88 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-- 88 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcce--
Confidence 578999999999999999999999999999877444333 48999999999874 57999999999999999988753
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd 267 (500)
.+..|...+.++.+.+. ...+++||+|++|++||.+...+...+... ..|.|+.... +.|+.|+.|..+.+||
T Consensus 89 ~igth~~~i~ci~~~~~-----~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~~v~g-~~LvVg~~~r~v~iyD 161 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYE-----VGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCMDVSG-NRLVVGTSDRKVLIYD 161 (323)
T ss_pred eeccCCCceEEEEeecc-----CCeEEEcccCccEEEEeccccccccccccC-ceEEEEeccC-CEEEEeecCceEEEEE
Confidence 46789999999987753 246899999999999998865444433322 2566666553 3566777777777777
Q ss_pred CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
+++-....
T Consensus 162 LRn~~~~~------------------------------------------------------------------------ 169 (323)
T KOG1036|consen 162 LRNLDEPF------------------------------------------------------------------------ 169 (323)
T ss_pred cccccchh------------------------------------------------------------------------
Confidence 76521100
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----ceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----KFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
+.+...-.-.++||++-|++.-.|++|-||+|.+=.++.. +....|+.|...-.... . .+
T Consensus 170 -----q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~--~---------~y 233 (323)
T KOG1036|consen 170 -----QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTE--I---------IY 233 (323)
T ss_pred -----hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCce--E---------EE
Confidence 0001112345789999999888999999999988655554 22345666643211110 0 01
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.+..++|+|--..||||+.||.|.+||+...+.+..+......|..++|+.||..||.++.
T Consensus 234 -------PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 234 -------PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -------EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 1234478998889999999999999999999988888877778999999999999999875
No 98
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=3.5e-28 Score=213.84 Aligned_cols=245 Identities=26% Similarity=0.432 Sum_probs=203.2
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
...+|.|-.++|++++|.++++.+++++.|+.+++|++...+.+.++.||++.|+++.|......+++|+.|.+|++||+
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl 290 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDL 290 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999887777999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
..+.+....+.+... ..|.-. ...+++|-.|++||+||.+...+......+. .|+++..+.++ .+++++
T Consensus 291 ~k~~C~kt~l~~S~c--nDI~~~-------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss 360 (459)
T KOG0288|consen 291 QKAYCSKTVLPGSQC--NDIVCS-------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS 360 (459)
T ss_pred hhhheeccccccccc--cceEec-------ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec
Confidence 998877766654432 222221 1357889999999999999999988887775 89999998887 488889
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|.++.+.|+++....+.+...+ +-+
T Consensus 361 RDdtl~viDlRt~eI~~~~sA~g--------------------------------------------------~k~---- 386 (459)
T KOG0288|consen 361 RDDTLKVIDLRTKEIRQTFSAEG--------------------------------------------------FKC---- 386 (459)
T ss_pred CCCceeeeecccccEEEEeeccc--------------------------------------------------ccc----
Confidence 99999999998866554432110 000
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc--EEEEEeeeeeee
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP--VYQIRFELIYCF 416 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~ 416 (500)
+| ..+.+.|||++.|+|+||.||.|+||++.++++...++..... |+++
T Consensus 387 -------------------as--DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~-------- 437 (459)
T KOG0288|consen 387 -------------------AS--DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSL-------- 437 (459)
T ss_pred -------------------cc--ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEE--------
Confidence 11 1567899999999999999999999999999998888764433 5544
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw 456 (500)
+|+|.|..|++++.++.+.+|
T Consensus 438 -------------------~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 438 -------------------SWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred -------------------EEcCCCchhhcccCCcceEec
Confidence 789999999999999999999
No 99
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.3e-27 Score=206.74 Aligned_cols=279 Identities=20% Similarity=0.281 Sum_probs=234.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC
Q 010816 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~ 230 (500)
..+.++...|....+++|+.|.++.++|..+++.. ..+.||...|+.+.++|. ...+++++.|-.|+||.....
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-~~~~Gh~kki~~v~~~~~-----~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-ATLKGHTKKITSVKFHKD-----LDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhh-hhccCcceEEEEEEeccc-----hhheeecCCcceEEeeccccc
Confidence 45788888887789999999999999999877654 368999999999998874 357899999999999999998
Q ss_pred eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeec--CCceEEEEEecCcceeeeccccCCCCCC
Q 010816 231 KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQY 307 (500)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (500)
.+......|..+|+.+...+.| +|++++.|++..+.|.++|..+..... .+..+.+.+++|++
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-------------- 359 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-------------- 359 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc--------------
Confidence 8888889999999999988876 799999999999999999988766544 34457888888873
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
..|.+|..|+.+++||+.... ...++.+|.+.|..++|+.+|.+||+++.|+.|++|
T Consensus 360 ----------------------Lifgtgt~d~~vkiwdlks~~-~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 360 ----------------------LIFGTGTPDGVVKIWDLKSQT-NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLW 416 (506)
T ss_pred ----------------------eEEeccCCCceEEEEEcCCcc-ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEE
Confidence 458899999999999987554 567888999999999999999999999999999999
Q ss_pred eCCCCceEEEEeCCc-ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC--cccc
Q 010816 388 NGTTGKFVAVFRGHV-GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKLK 464 (500)
Q Consensus 388 d~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~~ 464 (500)
|++..+.+.++.-.. .++.++ .|.+.|++|+.++.|=.|++++-.+ ..++
T Consensus 417 DLRKl~n~kt~~l~~~~~v~s~---------------------------~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~ 469 (506)
T KOG0289|consen 417 DLRKLKNFKTIQLDEKKEVNSL---------------------------SFDQSGTYLGIAGSDLQVYICKKKTKSWTEI 469 (506)
T ss_pred EehhhcccceeeccccccceeE---------------------------EEcCCCCeEEeecceeEEEEEecccccceee
Confidence 999887766654322 233333 5678999999999887777777544 4556
Q ss_pred ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..+..|.+..+.+.|....++++++|.|..++++-
T Consensus 470 ~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 470 KELADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ehhhhcccccceeeecccceEEeeccchhheEEee
Confidence 67778888899999999999999999999998863
No 100
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=5.1e-27 Score=197.83 Aligned_cols=301 Identities=23% Similarity=0.347 Sum_probs=221.1
Q ss_pred cCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc------------ee---EEecCCCCCEEEEEEcC-CCCEEEE
Q 010816 105 AGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT------------PM---FKCTGHKNWVLCIAWSA-DGKHLVS 167 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~------------~~---~~~~~h~~~v~~v~~s~-~~~~l~s 167 (500)
.-|.+.|.++++.+. |+++++|+.||.|.+||++... ++ ..-.+|.-.|.++.|-| |..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 348999999999985 8999999999999999997532 11 01236888999999998 5668899
Q ss_pred EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (500)
++.|.++++||.++-+.... ..-.+.|.+-+|+|... ....+++|..|-.|++-|+..+.+...+.||...|.++.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~--F~me~~VYshamSp~a~--sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~ 195 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVD--FKMEGKVYSHAMSPMAM--SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVE 195 (397)
T ss_pred ccccceEEEeecccceeeEE--eecCceeehhhcChhhh--cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEE
Confidence 99999999999988654321 12345566777777543 224678888899999999999999999999999999999
Q ss_pred eCCCC--eEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 248 WGGDG--VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 248 ~~~~~--~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
|+|.. .|++|+.||.||+||++.. .+...+..|..
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~------------------------------------------ 233 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT------------------------------------------ 233 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccC------------------------------------------
Confidence 99865 5889999999999998764 33333332211
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe---CC
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---GH 401 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~---~h 401 (500)
. ..+....-..|.+.|+.++|+.+|.++++.+.|..+++|+...|+....-- .|
T Consensus 234 ----------------k-------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~ 290 (397)
T KOG4283|consen 234 ----------------K-------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIH 290 (397)
T ss_pred ----------------c-------cCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccc
Confidence 0 001111234678889999999999999999999999999998886421100 01
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
... ....+. . . +.+...++---.|+.+.++++-.++.++.+.+|...|.+..+-|
T Consensus 291 n~~-~~~~~~---------------~--------~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~ 345 (397)
T KOG4283|consen 291 NQT-TSFAVH---------------I--------Q-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP 345 (397)
T ss_pred ccc-ccceEE---------------E--------e-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC
Confidence 111 000110 0 0 12222333333457788888888888888889988999999999
Q ss_pred CCCEEEEEeCCCcEEEec
Q 010816 482 DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 482 dg~~l~s~~~D~~v~iW~ 499 (500)
+=+.+.+++.|+.|.-|-
T Consensus 346 ~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 346 DFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred chhhhhccccCCcccccc
Confidence 999999999999999884
No 101
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=6.5e-26 Score=220.68 Aligned_cols=225 Identities=17% Similarity=0.247 Sum_probs=175.4
Q ss_pred EeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCe--------eEEEeecCCceEE
Q 010816 216 ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGK--------LIRELKGHGHWVN 285 (500)
Q Consensus 216 ~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~--------~~~~~~~~~~~v~ 285 (500)
|+.++.+++|+......+..+.+|...|.+++|+++ ..|++|+.|++|++||+.++. .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 456778899998877788889999999999999985 479999999999999997642 2345678888999
Q ss_pred EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (500)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~ 365 (500)
+++++|.. ...+++++.|++|++||+...... ..+ .|...|.+
T Consensus 130 sVaf~P~g-----------------------------------~~iLaSgS~DgtIrIWDl~tg~~~-~~i-~~~~~V~S 172 (568)
T PTZ00420 130 IIDWNPMN-----------------------------------YYIMCSSGFDSFVNIWDIENEKRA-FQI-NMPKKLSS 172 (568)
T ss_pred EEEECCCC-----------------------------------CeEEEEEeCCCeEEEEECCCCcEE-EEE-ecCCcEEE
Confidence 99998752 234678999999999998765432 223 35678999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (500)
Q Consensus 366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 445 (500)
++|+|+|.+|++++.|+.|+|||+++++.+..+.+|.+.+....+- ...|++++.+|+
T Consensus 173 lswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~----------------------~~~fs~d~~~Il 230 (568)
T PTZ00420 173 LKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIW----------------------IDGLGGDDNYIL 230 (568)
T ss_pred EEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEE----------------------eeeEcCCCCEEE
Confidence 9999999999999999999999999999999999998875443210 013578999999
Q ss_pred EEECCC----cEEEEECCC-cccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 446 SGSKDS----TLKVWDIRT-QKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 446 s~s~d~----~v~iwd~~~-~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+++.|+ .|+|||++. .+.+..+. .+.+.+...-..++|.++++|+.|++|++|+
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e 291 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQ 291 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEE
Confidence 988774 799999985 44444332 2333333333456689999999999999997
No 102
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.5e-27 Score=212.78 Aligned_cols=244 Identities=26% Similarity=0.475 Sum_probs=197.7
Q ss_pred cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----------EEEEecCccccEEEEEeCC--CCeEEEE
Q 010816 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----------CVICLSGHTLAVTCVKWGG--DGVIYTG 257 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~~~~~~--~~~l~t~ 257 (500)
..|.+.|+.+.+.|.. ...+++++..+.|.|||..+.. .-..+.||...-..+.|+. .+.++++
T Consensus 121 i~h~gEVnRaRymPQn----p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~ 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQN----PNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG 196 (422)
T ss_pred ccCCccchhhhhCCCC----CcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec
Confidence 3577778888777743 3478888999999999986432 1225778988777788986 4689999
Q ss_pred eCCCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 258 SQDCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
+.|++|++||+.... ....+.+|...|..+++++- ...
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~-----------------------------------h~~ 241 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL-----------------------------------HED 241 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc-----------------------------------chh
Confidence 999999999986542 23456788888888887753 135
Q ss_pred EEEEeeCCCeEEEEcCCC-CCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEE
Q 010816 331 RLVSGSDDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQ 407 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~-~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~ 407 (500)
.|.+.+.|+.+.|||.+. ...+.....+|...|+|++|+| ++..||+||.|++|++||++.. +.+.++.+|...|.+
T Consensus 242 lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~ 321 (422)
T KOG0264|consen 242 LFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQ 321 (422)
T ss_pred hheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEE
Confidence 688999999999999986 4445666789999999999999 6788999999999999999885 467899999999999
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCc--------------cccccccCccc
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQ--------------KLKQDLPGHAD 472 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~--------------~~~~~~~~h~~ 472 (500)
| .|||+. ..||+++.|+.+.+||+..- +++..-.||..
T Consensus 322 V---------------------------~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~ 374 (422)
T KOG0264|consen 322 V---------------------------EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA 374 (422)
T ss_pred E---------------------------EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccc
Confidence 8 468864 68899999999999998641 23466789999
Q ss_pred CEEEEEEcCCCCE-EEEEeCCCcEEEec
Q 010816 473 EVFAVDWSPDGEK-VASGGKDRVLKLWM 499 (500)
Q Consensus 473 ~V~~l~~s~dg~~-l~s~~~D~~v~iW~ 499 (500)
.|..++|+|...+ |+|++.|+.+.||+
T Consensus 375 kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 375 KVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ccccccCCCCCCeEEEEecCCceEEEee
Confidence 9999999999877 56899999999996
No 103
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-26 Score=190.95 Aligned_cols=246 Identities=22% Similarity=0.337 Sum_probs=190.4
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-----CCeEE
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----AGELQ 175 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i~ 175 (500)
..++.||++.|+||+++-+.++|+||+.|.++++||+++++++..++ ...+|..+.|+++|++++.+.. .+.|.
T Consensus 45 lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~ 123 (327)
T KOG0643|consen 45 LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVS 123 (327)
T ss_pred eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEE
Confidence 35788999999999999999999999999999999999999998876 4678999999999998776543 46799
Q ss_pred EEeCCCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccccEEEEEe
Q 010816 176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKW 248 (500)
Q Consensus 176 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~ 248 (500)
++|++... .....+..+...++.+-|.|.. ..+++|..||.|.+||+++++ .+..-..|...|+.+.+
T Consensus 124 ~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-----~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~ 198 (327)
T KOG0643|consen 124 VFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-----ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQF 198 (327)
T ss_pred EEEccCChhhhcccCceEEecCCccceeeeeecccC-----CEEEEecCCCcEEEEEcccCceeeechhhhccccccccc
Confidence 99987332 1112345566788888898853 579999999999999999975 44555779999999999
Q ss_pred CCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 249 GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 249 ~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
+++. .+++++.|.+-++||.++-..++++. ...+|++.+++|..
T Consensus 199 s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~---------------------------------- 243 (327)
T KOG0643|consen 199 SRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLL---------------------------------- 243 (327)
T ss_pred cCCcceEEecccCccceeeeccceeeEEEee-ecccccceeccccc----------------------------------
Confidence 9987 58899999999999999988888775 45678888887742
Q ss_pred CCcEEEEeeC-CC-------------eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 328 APERLVSGSD-DF-------------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 328 ~~~~~~s~s~-d~-------------~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
+.++.|+. +. .-++++... .....+..+|-++|++|+|+|+|+..++|+.||.||+.-..
T Consensus 244 --d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~-eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 244 --DHVILGGGQEAMDVTTTSTRAGKFEARFYHLIF-EEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred --ceEEecCCceeeeeeeecccccchhhhHHHHHH-HHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 11222111 11 111122111 11234568999999999999999999999999999997543
No 104
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=5.5e-26 Score=220.36 Aligned_cols=265 Identities=17% Similarity=0.264 Sum_probs=196.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC----------CCccc--ccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQT----------GKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~----------~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~ 218 (500)
..|.....++++..+++++.+.....|+... |+... ..+.+|...|.++.|+|.. ..++++|+.
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d----~~~LaSgS~ 96 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD----PQKLFTASE 96 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCC----CCEEEEEeC
Confidence 3455555666766667777666666776432 22111 2367899999999998842 358999999
Q ss_pred CCcEEEEECCCC-------eEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816 219 DGDARIWDVSLR-------KCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (500)
Q Consensus 219 dg~v~iwd~~~~-------~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~ 289 (500)
|++|++||+..+ ..+..+.+|...|.++.|+++ +.|++|+.|++|++||+.+++.+..+..|...|.++++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 999999999764 356778999999999999986 47999999999999999999998899999999999999
Q ss_pred cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc-EEEEEE
Q 010816 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL-VNHVYF 368 (500)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~-v~~l~~ 368 (500)
+++ +..+++++.|++|++||++... ....+.+|... +..+.|
T Consensus 177 spd------------------------------------G~lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~~~~~~~~~w 219 (493)
T PTZ00421 177 NLD------------------------------------GSLLCTTSKDKKLNIIDPRDGT-IVSSVEAHASAKSQRCLW 219 (493)
T ss_pred ECC------------------------------------CCEEEEecCCCEEEEEECCCCc-EEEEEecCCCCcceEEEE
Confidence 875 3578999999999999987654 34556778654 456788
Q ss_pred CCCCCEEEEEe----CCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 369 SPDGQWVASAS----FDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 369 sp~g~~lasgs----~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
.+++..+++++ .|+.|++||+++.. .+.....+... ......|++++.+
T Consensus 220 ~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~--------------------------~~~~~~~d~d~~~ 273 (493)
T PTZ00421 220 AKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSS--------------------------ALFIPFFDEDTNL 273 (493)
T ss_pred cCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCC--------------------------ceEEEEEcCCCCE
Confidence 99887777654 47999999998654 22222222111 1112257899999
Q ss_pred EEEEE-CCCcEEEEECCCccccccccC-cccCEEEEEEcCC
Q 010816 444 LLSGS-KDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPD 482 (500)
Q Consensus 444 l~s~s-~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~d 482 (500)
|++|+ .|+.|++||+..++....... +...+.+++|.|.
T Consensus 274 L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 274 LYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence 99887 599999999998877654433 3445667777774
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=222.14 Aligned_cols=271 Identities=22% Similarity=0.425 Sum_probs=208.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCc-----ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eE
Q 010816 160 ADGKHLVSGSKAGELQCWDPQTGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KC 232 (500)
Q Consensus 160 ~~~~~l~s~~~d~~i~~wd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~ 232 (500)
|++++|++||.||.|++|+...-.. -...+..|.++|+.+...- .++.|+++|.|.+|++|+...+ -|
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~-----~~~tlIS~SsDtTVK~W~~~~~~~~c 109 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCG-----NGKTLISASSDTTVKVWNAHKDNTFC 109 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhc-----CCCceEEecCCceEEEeecccCcchh
Confidence 4677899999999999998754322 1234678999998876432 3458999999999999999877 68
Q ss_pred EEEecCccccEEEEEe-CCCC-eEEEEeCCCeEEEEeCCCCe--eEEEe--------e-cCCceEEEEEecCcceeeecc
Q 010816 233 VICLSGHTLAVTCVKW-GGDG-VIYTGSQDCTIKVWETTQGK--LIREL--------K-GHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 233 ~~~~~~h~~~v~~~~~-~~~~-~l~t~~~dg~i~lwd~~~~~--~~~~~--------~-~~~~~v~~~~~~~~~~~~~~~ 299 (500)
+.+++.|...|.|+++ .++. .+++||-|+.|.+||+.+|. .+..+ . ++...|.+++..+.
T Consensus 110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t------- 182 (735)
T KOG0308|consen 110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT------- 182 (735)
T ss_pred HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc-------
Confidence 8889999999999999 5544 67889999999999998873 22221 1 33344444443322
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs 379 (500)
+..+++|+..+.+++||++..+. ..++.||++.|.++-.++||+.++++|
T Consensus 183 -----------------------------~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls~s 232 (735)
T KOG0308|consen 183 -----------------------------GTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLSAS 232 (735)
T ss_pred -----------------------------ceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEeecC
Confidence 34689999999999999886554 456779999999999999999999999
Q ss_pred CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.||+|++||+...+|+.++..|...++++.. +|+-..+++|+.||.|..=|++
T Consensus 233 SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~---------------------------~~sf~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 233 SDGTIRLWDLGQQRCLATYIVHKEGVWALQS---------------------------SPSFTHVYSGGRDGNIYRTDLR 285 (735)
T ss_pred CCceEEeeeccccceeeeEEeccCceEEEee---------------------------CCCcceEEecCCCCcEEecccC
Confidence 9999999999999999999999998988854 5677899999999999999998
Q ss_pred CccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 460 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.....-+-....+|..+..+.+.+-+=+++.|+.|+-|.
T Consensus 286 n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 286 NPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred CchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence 8433222222334555555554444445667777788775
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-27 Score=217.45 Aligned_cols=239 Identities=23% Similarity=0.386 Sum_probs=198.6
Q ss_pred EEEEc-CCCCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-c
Q 010816 113 SVAFS-PDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-P 184 (500)
Q Consensus 113 ~~~~s-p~~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~ 184 (500)
.+..+ |.+++|+|||.||.|++|+..... ....+..|.++|..+....+|+.|+|+|.|-+|++|+...+. .
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 44444 456789999999999999975321 256778899999999999999999999999999999998764 2
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE--E--------EEec-CccccEEEEEeCCCCe
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC--V--------ICLS-GHTLAVTCVKWGGDGV 253 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~--~--------~~~~-~h~~~v~~~~~~~~~~ 253 (500)
....+..|++.|.+++.- ..+...+++||-|+.|.+||++++.. + ..+. |+..+|.+++-++.+.
T Consensus 109 c~stir~H~DYVkcla~~----ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t 184 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYI----AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT 184 (735)
T ss_pred hHhhhhcccchheeeeec----ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce
Confidence 234578899999999863 22445899999999999999987622 1 1223 7888999999988875
Q ss_pred -EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 254 -IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 254 -l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
|++|+..+.+++||.++++.+..+++|..-|+.+.++.+ +.++
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dD------------------------------------Gt~~ 228 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDD------------------------------------GTRL 228 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCC------------------------------------CCeE
Confidence 677999999999999999999999999999999988765 4579
Q ss_pred EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
+++|.||+|++||+...+ ....+..|.+.|+++..+|+-.++.+|+.||.|..=|+++-
T Consensus 229 ls~sSDgtIrlWdLgqQr-Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQR-CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eecCCCceEEeeeccccc-eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999986543 44557889999999999999999999999999999998873
No 107
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7.8e-27 Score=214.41 Aligned_cols=298 Identities=23% Similarity=0.383 Sum_probs=226.0
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeEE
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQ 175 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~ 175 (500)
..|...+.||++.|.+|..+|.|.+||+|+.||+|+||.+.++.++..+. ..+.|.||+|+|.++ .||++ ....+.
T Consensus 390 t~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~~~~~ 467 (733)
T KOG0650|consen 390 TRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VGECVL 467 (733)
T ss_pred ceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ecCceE
Confidence 34666789999999999999999999999999999999999999998765 355799999999765 34443 333355
Q ss_pred EEeCCCCCccc------------------------------------ccccCcccceEEEEeeeeecCCCCceEEEEeC-
Q 010816 176 CWDPQTGKPSG------------------------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASK- 218 (500)
Q Consensus 176 ~wd~~~~~~~~------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~- 218 (500)
+-+..-|..+. ...-.|...|.++.|+. .+.+|++...
T Consensus 468 ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr-----kGDYlatV~~~ 542 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR-----KGDYLATVMPD 542 (733)
T ss_pred EeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec-----CCceEEEeccC
Confidence 55543221000 01123556677777764 4567776544
Q ss_pred --CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 219 --DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 219 --dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
...|.|.++..++...-|+...+.|.++.|.|.. +++.+ ....||+||+..+..++.+.....+|..+++++.
T Consensus 543 ~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~--- 618 (733)
T KOG0650|consen 543 SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPN--- 618 (733)
T ss_pred CCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-eccceEEEehhHHHHHHHHhcCCeeeeeeeecCC---
Confidence 4588899998777666666666778999999865 44444 4578999999988888888778889999988874
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 375 (500)
++.++.|+.|+.+..+|+.....+...+.-|...+++|+|++.-.++
T Consensus 619 ---------------------------------GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 619 ---------------------------------GDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred ---------------------------------CCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccccee
Confidence 56799999999999999988888888899999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816 376 ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (500)
Q Consensus 376 asgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i 455 (500)
|+|+.||++.|+... |+.= +- .+-++
T Consensus 666 as~sdDgtv~Vfhg~--------------VY~D----------------------------l~-qnpli----------- 691 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGM--------------VYND----------------------------LL-QNPLI----------- 691 (733)
T ss_pred eeecCCCcEEEEeee--------------eehh----------------------------hh-cCCce-----------
Confidence 999999999988421 1100 00 00011
Q ss_pred EECCCccccccccCcccC----EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 456 WDIRTQKLKQDLPGHADE----VFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 456 wd~~~~~~~~~~~~h~~~----V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
-.++.++||... |..+.|+|...||+++|+||+|++|.
T Consensus 692 ------VPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 692 ------VPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred ------EeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence 123556777654 89999999999999999999999994
No 108
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.8e-25 Score=189.75 Aligned_cols=261 Identities=22% Similarity=0.409 Sum_probs=189.0
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd 178 (500)
.+|.+-|.++.|++.|+++|||+.|++|+|||.+... +....+.|.+.|..|.|.+ -|+.+|+|+.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 6899999999999999999999999999999975443 3345568999999999975 489999999999999997
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIY 255 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~ 255 (500)
-...+ ..+|. ..|. ...++......|+++.|.|.. .++
T Consensus 90 E~~~~-----~~~~~-----~~Wv-----------------------------~~ttl~DsrssV~DV~FaP~hlGLklA 130 (361)
T KOG2445|consen 90 EQEKS-----EEAHG-----RRWV-----------------------------RRTTLVDSRSSVTDVKFAPKHLGLKLA 130 (361)
T ss_pred ecccc-----ccccc-----ceeE-----------------------------EEEEeecCCcceeEEEecchhcceEEE
Confidence 53211 11221 1111 111233445678889998753 488
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+++.||.+|||+......+..
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~----------------------------------------------------------- 151 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQ----------------------------------------------------------- 151 (361)
T ss_pred EeccCcEEEEEecCCcccccc-----------------------------------------------------------
Confidence 999999999998754322211
Q ss_pred eCCCeEEEEcCCCCCC-CceeeecccCcEEEEEECCC---CCEEEEEeCC-----CcEEEEeCCCCc----eEEEEeCCc
Q 010816 336 SDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPD---GQWVASASFD-----KSIKLWNGTTGK----FVAVFRGHV 402 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~-~~~~~~~h~~~v~~l~~sp~---g~~lasgs~D-----g~i~lwd~~~~~----~~~~~~~h~ 402 (500)
|.+....+ .......+.....||.|+|. ..+||.|+.+ +.++||....+. .+..+.+|.
T Consensus 152 --------W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 152 --------WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred --------chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 11110000 00011223445678888873 5789998877 578999766532 356678899
Q ss_pred ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC----CCEEEEEECCCcEEEEECCCc-----------------
Q 010816 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD----SRLLLSGSKDSTLKVWDIRTQ----------------- 461 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~s~s~d~~v~iwd~~~~----------------- 461 (500)
.+|+.+.| .|+ -.+||+|+.|| |+||+++..
T Consensus 224 dpI~di~w---------------------------APn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~ 275 (361)
T KOG2445|consen 224 DPIRDISW---------------------------APNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD 275 (361)
T ss_pred Ccceeeee---------------------------ccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccc
Confidence 99998854 554 35899999999 999998741
Q ss_pred ---cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 462 ---KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 462 ---~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+..+.+|+++|+.+.|+-.|..|+|.|.||.||+|.
T Consensus 276 l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 276 LPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred cceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehh
Confidence 12345788999999999999999999999999999996
No 109
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=197.02 Aligned_cols=252 Identities=29% Similarity=0.487 Sum_probs=202.3
Q ss_pred cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeC------CC-------------------------------
Q 010816 97 VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL------NT------------------------------- 139 (500)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~------~~------------------------------- 139 (500)
.+.|..++.||.+.|.+++|++.+.+++|+++|++..||.. ..
T Consensus 179 sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~ 258 (481)
T KOG0300|consen 179 SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDG 258 (481)
T ss_pred cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCC
Confidence 35789999999999999999999999999999999999962 10
Q ss_pred ---CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE
Q 010816 140 ---QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (500)
Q Consensus 140 ---~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~ 216 (500)
..|+..+++|...|.+..|-..|+.+++++.|.+..+||+++|..+ .++.||....+.++-+| ..+.++++
T Consensus 259 ~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-~~LtGHd~ELtHcstHp-----tQrLVvTs 332 (481)
T KOG0300|consen 259 HTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-NILTGHDSELTHCSTHP-----TQRLVVTS 332 (481)
T ss_pred ceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-ccccCcchhccccccCC-----cceEEEEe
Confidence 0245678899999999999999999999999999999999999865 47899999888776554 44678899
Q ss_pred eCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcce
Q 010816 217 SKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYA 294 (500)
Q Consensus 217 s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 294 (500)
|.|.+.++||.+.. ..+..|.||+..|+++.|..+..+++|+.|.+|++||+++-+ .+.++. ...+++.++++..
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g-- 409 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKG-- 409 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecC--
Confidence 99999999999854 457789999999999999999999999999999999997643 333333 2344555554432
Q ss_pred eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC---CCceeeecccCcEEEEEECCC
Q 010816 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPD 371 (500)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~---~~~~~~~~h~~~v~~l~~sp~ 371 (500)
...++.-.+++.|++||+.... .|...-.+|...|.|++|..+
T Consensus 410 ----------------------------------~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 410 ----------------------------------HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred ----------------------------------CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 1245666677889999975432 234445789999999999854
Q ss_pred C--CEEEEEeCCCcEEEEeCCC
Q 010816 372 G--QWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 372 g--~~lasgs~Dg~i~lwd~~~ 391 (500)
- .-|.+++.|+.+.-|++..
T Consensus 456 hp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 456 HPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CcccccccccccceeeeeEecc
Confidence 3 4578899999999998754
No 110
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=190.89 Aligned_cols=244 Identities=23% Similarity=0.386 Sum_probs=186.0
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i 224 (500)
..|++.|..+...--|++||+|+.|++|+|+..+.... ....+.||.++|..+.|-... -+..+++++.||.|.|
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk---~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPK---FGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccc---cCcEeeEeecCceEEE
Confidence 46888888877777799999999999999999876542 334689999999999996432 2468999999999999
Q ss_pred EECCCCe--EEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCCC-ee--EEEeecCCceEEEEEecCcceee
Q 010816 225 WDVSLRK--CVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQG-KL--IRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 225 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~~-~~--~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
|.-+.++ .......|...|++++|.|.+ .|++++.||.|.+.+.+.. .. .+...
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~------------------ 146 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVF------------------ 146 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhh------------------
Confidence 9988773 344566899999999999876 4888999999999876542 11 11122
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC---C-
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---G- 372 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~---g- 372 (500)
.|.-.|++++|.|- |
T Consensus 147 -------------------------------------------------------------aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 147 -------------------------------------------------------------AHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred -------------------------------------------------------------ccccccceeeecCcCCCcc
Confidence 33333444444432 2
Q ss_pred ----------CEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 373 ----------QWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 373 ----------~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
+.|++|+.|..|+||+...++. -.+|++|.+.|..+ +|.|.
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV---------------------------AwaP~ 218 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV---------------------------AWAPS 218 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh---------------------------hhccc
Confidence 5699999999999999988743 35689999998887 45555
Q ss_pred C----CEEEEEECCCcEEEEECCCc--ccc-ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 441 S----RLLLSGSKDSTLKVWDIRTQ--KLK-QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 441 ~----~~l~s~s~d~~v~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
- ..||++|.||+|.||..... +.. ..+....+.++.++||+.|+.|+.++.|+.|.+|.
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 3 58999999999999976521 111 12233457899999999999999999999999995
No 111
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.7e-26 Score=218.37 Aligned_cols=277 Identities=20% Similarity=0.385 Sum_probs=210.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc-c-cc----ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS-G-NP----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (500)
Q Consensus 153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~-~-~~----~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd 226 (500)
...++.+++-..|+.++. ..++++........ . .. ...-......+.|... ....+++++..|.|.+||
T Consensus 42 ~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~----~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQL----YSNLIATCSTNGVISVWD 116 (839)
T ss_pred cceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccc----hhhhheeecCCCcEEEEe
Confidence 455666677777777664 35666654322110 0 00 0000112345667632 345799999999999999
Q ss_pred CCC---CeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 227 VSL---RKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 227 ~~~---~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
+.. .+.+..|..|...++++.|++- .+|++|++||+|++||++..+...++.+....|+.+.++|.+
T Consensus 117 lnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~-------- 188 (839)
T KOG0269|consen 117 LNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY-------- 188 (839)
T ss_pred cCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC--------
Confidence 987 5677788999999999999863 589999999999999999988888888888888888888752
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
+..|+++.+.|.+++||++.......++.+|.+.|.|+.|+|++.+|||||.|
T Consensus 189 ---------------------------~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 189 ---------------------------GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred ---------------------------CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCC
Confidence 46799999999999999999888888999999999999999999999999999
Q ss_pred CcEEEEeCCCCceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE--CCCcEEEEE
Q 010816 382 KSIKLWNGTTGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS--KDSTLKVWD 457 (500)
Q Consensus 382 g~i~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s--~d~~v~iwd 457 (500)
+.|+|||..+++......-+ ..++.++ .|-|+.+ +||+++ .|..|+|||
T Consensus 242 K~vkiWd~t~~~~~~~~tInTiapv~rV---------------------------kWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINTIAPVGRV---------------------------KWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred ccEEEEeccCCCccceeEEeecceeeee---------------------------eeccCccchhhhhhccccceEEEEe
Confidence 99999999876543222211 2344444 5677654 566665 478999999
Q ss_pred CCCccc-cccccCcccCEEEEEEcC-CCCEEEEEeCCCcEE
Q 010816 458 IRTQKL-KQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLK 496 (500)
Q Consensus 458 ~~~~~~-~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~ 496 (500)
++..-. ...+..|.+.|+.++|-. |...|-+++.|++|.
T Consensus 295 vrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 295 VRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred eccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 986543 456778999999999954 567789999999864
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-24 Score=185.36 Aligned_cols=241 Identities=20% Similarity=0.271 Sum_probs=185.6
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC--CCcEE
Q 010816 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK--DGDAR 223 (500)
Q Consensus 146 ~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~ 223 (500)
+......|.++.|+++|.+|++++.|.+++|||..+|+... .+..++..+..+.|... ...++.++. |.+||
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~-----~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHH-----SNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEecC-----CceEEEccCCCCCceE
Confidence 33456789999999999999999999999999999998654 34445555666665432 224555554 88999
Q ss_pred EEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 224 IWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
..++.+.+.+..|.||...|.++..+| +..+++++.|++||+||++..++...+..
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----------------------- 140 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----------------------- 140 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec-----------------------
Confidence 999999999999999999999999987 45789999999999999885443221110
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
..-...+|+|.|-++|++....
T Consensus 141 ----------------------------------------------------------~~~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 141 ----------------------------------------------------------SGRPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred ----------------------------------------------------------CCCcceeECCCCcEEEEecCCC
Confidence 0012468999999999998888
Q ss_pred cEEEEeCCCC--ceEEEEe---CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 383 SIKLWNGTTG--KFVAVFR---GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 383 ~i~lwd~~~~--~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
.|++||++.- ....++. +..... ..+.|||||++++.+...+.+++.|
T Consensus 163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew---------------------------~~l~FS~dGK~iLlsT~~s~~~~lD 215 (311)
T KOG1446|consen 163 LIKLYDLRSFDKGPFTTFSITDNDEAEW---------------------------TDLEFSPDGKSILLSTNASFIYLLD 215 (311)
T ss_pred eEEEEEecccCCCCceeEccCCCCccce---------------------------eeeEEcCCCCEEEEEeCCCcEEEEE
Confidence 9999998752 2222221 112222 3346799999999999999999999
Q ss_pred CCCccccccccCcccCE---EEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 458 IRTQKLKQDLPGHADEV---FAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 458 ~~~~~~~~~~~~h~~~V---~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.-+|..+..+.++...- ....|+||++++.+|+.||+|.+|+.
T Consensus 216 Af~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 216 AFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred ccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 99999888887775432 57889999999999999999999974
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=4.7e-26 Score=203.30 Aligned_cols=246 Identities=23% Similarity=0.419 Sum_probs=201.4
Q ss_pred CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC----------ceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCe
Q 010816 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ----------TPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGE 173 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~----------~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~ 173 (500)
-|.+.|..+..-|+.. .+|+++..+.|.|||..+. .+-..+.||.+.=..++|++.. ..|++++.|++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~ 201 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHT 201 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCc
Confidence 4888999999999765 5677788999999998642 2334788999877889999853 58999999999
Q ss_pred EEEEeCCCCCc------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC--CCeEEEEecCccccEEE
Q 010816 174 LQCWDPQTGKP------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLSGHTLAVTC 245 (500)
Q Consensus 174 i~~wd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~--~~~~~~~~~~h~~~v~~ 245 (500)
|++||+..... ....+.+|...|..++|++.+. ..|++++.|+.+.|||++ +.++.....+|...|.|
T Consensus 202 i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~----~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 202 ICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE----DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred EEEEeccccccCCccccceEEeecCCcceehhhccccch----hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 99999875433 1234689999999999999754 479999999999999999 56666777899999999
Q ss_pred EEeCCC--CeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 246 VKWGGD--GVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 246 ~~~~~~--~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
++|+|- ..|+||+.|++|+|||+|+- +.+..+.+|...|..+.++|..
T Consensus 278 ~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~----------------------------- 328 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHN----------------------------- 328 (422)
T ss_pred EEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCC-----------------------------
Confidence 999874 47899999999999999875 4578889999999999999853
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-------------ceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEe
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQP-------------KTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWN 388 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-------------~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd 388 (500)
...+++++.|+.+.+||+..-... ...-.||...|..++|+|+.. .+++.+.|+.+.||+
T Consensus 329 ------etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~ 402 (422)
T KOG0264|consen 329 ------ETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ 402 (422)
T ss_pred ------CceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence 346899999999999997532211 123468999999999999875 567889999999998
Q ss_pred CC
Q 010816 389 GT 390 (500)
Q Consensus 389 ~~ 390 (500)
..
T Consensus 403 ~s 404 (422)
T KOG0264|consen 403 MA 404 (422)
T ss_pred cc
Confidence 74
No 114
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.95 E-value=6.6e-26 Score=204.14 Aligned_cols=280 Identities=20% Similarity=0.426 Sum_probs=218.1
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
..|.+-|.++.+|...+++.||+ .|.|+|||+... .++..+ ....+.|.++...|||+.|++|+.-.++.|||+
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 36889999999999999999985 567999999643 333333 345678999999999999999999999999999
Q ss_pred CCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEE
Q 010816 180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTG 257 (500)
Q Consensus 180 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~ 257 (500)
...... +..+...--...+++ .+.+.+..+++..||.|.|||+.+...+..|.||+..+.|+..+.||+ |.||
T Consensus 495 AapTprikaeltssapaCyALa-----~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALA-----ISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhh-----cCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence 765421 111111111112222 344667888999999999999999999999999999999999999985 8999
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+-|++||-||+++++.++...
T Consensus 570 GlDntvRcWDlregrqlqqhd----------------------------------------------------------- 590 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD----------------------------------------------------------- 590 (705)
T ss_pred CCccceeehhhhhhhhhhhhh-----------------------------------------------------------
Confidence 999999999998876432110
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
....|.++.++|++.+||.|-..+.+.|......+ ...+.-|+.-|.+++
T Consensus 591 ---------------------F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlK-------- 640 (705)
T KOG0639|consen 591 ---------------------FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLK-------- 640 (705)
T ss_pred ---------------------hhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEE--------
Confidence 11346678889999999999999998888764332 333445666566654
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
|++-|+++++.+.|+.+..|.+--+..+...+ ..+.|++++.|-|.++++|||.|+...+
T Consensus 641 -------------------Fa~cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 641 -------------------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred -------------------ecccCceeeecCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEE
Confidence 57899999999999999999988777666554 4578999999999999999999988877
Q ss_pred ec
Q 010816 498 WM 499 (500)
Q Consensus 498 W~ 499 (500)
|+
T Consensus 701 Ye 702 (705)
T KOG0639|consen 701 YE 702 (705)
T ss_pred EE
Confidence 75
No 115
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.3e-25 Score=220.69 Aligned_cols=268 Identities=26% Similarity=0.365 Sum_probs=203.9
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------C--------ceeEEecCCCCCEEEEEEcCC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------Q--------TPMFKCTGHKNWVLCIAWSAD 161 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----------~--------~~~~~~~~h~~~v~~v~~s~~ 161 (500)
...+...|.+.|.|+.|+|||++||+|++|+.|.||+... + +....+.+|...|..+.|+|+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3446678999999999999999999999999999998762 0 245567899999999999999
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT- 240 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~- 240 (500)
+.+|++++.|++|.+||..+.+ ....+.+|...|-++.|.|. +++|++-+.|+++++|+.....+...+.++.
T Consensus 141 ~~~lvS~s~DnsViiwn~~tF~-~~~vl~~H~s~VKGvs~DP~-----Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~ 214 (942)
T KOG0973|consen 141 DSLLVSVSLDNSVIIWNAKTFE-LLKVLRGHQSLVKGVSWDPI-----GKYFASQSDDRTLKVWRTSDWGIEKSITKPFE 214 (942)
T ss_pred ccEEEEecccceEEEEccccce-eeeeeecccccccceEECCc-----cCeeeeecCCceEEEEEcccceeeEeeccchh
Confidence 9999999999999999999984 44568999999999999984 4689999999999999987766665555442
Q ss_pred -----ccEEEEEeCCCCeEEEEe-----CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 241 -----LAVTCVKWGGDGVIYTGS-----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 241 -----~~v~~~~~~~~~~l~t~~-----~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
.....+.|+|||.+++.. .-.++.|.+..+-+.-..+-+|..++.++.++|...-.... +.......
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~-ng~~~~~~-- 291 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNK-NGTSTQPN-- 291 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccc-cCCccCCC--
Confidence 346788999999644322 23468888766656667888999999999998752110000 00000000
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
..-..+++||.|++|.+|.....+.......--...|..++|+|||..|..+|.||+|.+...+
T Consensus 292 ----------------~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe 355 (942)
T KOG0973|consen 292 ----------------CYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE 355 (942)
T ss_pred ----------------cceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence 0012578999999999998654433222112224679999999999999999999999999877
Q ss_pred CC
Q 010816 391 TG 392 (500)
Q Consensus 391 ~~ 392 (500)
..
T Consensus 356 e~ 357 (942)
T KOG0973|consen 356 EK 357 (942)
T ss_pred hH
Confidence 53
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=4.7e-25 Score=187.82 Aligned_cols=241 Identities=21% Similarity=0.370 Sum_probs=189.6
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEeCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l~s~~~d~~i~~wd~~ 180 (500)
.+..|.++|++++. ++.++|+||.|-+|+|||+.....+..+..|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 45789999999998 789999999999999999999888888889999999999998765 89999999999999987
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ 259 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~ 259 (500)
.-... ..+.+|...|+.++-+| .++.-++.+.|+.+++||+-+++.-+.++-.+. -+.+.|++.|. ++.++.
T Consensus 116 ~W~~~-~slK~H~~~Vt~lsiHP-----S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 116 SWELL-KSLKAHKGQVTDLSIHP-----SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred CeEEe-eeecccccccceeEecC-----CCceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec
Confidence 65443 35789999999998776 345667889999999999988776554432211 23388998875 555554
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
+.|-+|.+.+......+... ..+.++.+. ....+++|.+|+
T Consensus 189 -~~i~i~q~d~A~v~~~i~~~-~r~l~~~~l-------------------------------------~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 189 -NKIDIYQLDNASVFREIENP-KRILCATFL-------------------------------------DGSELLVGGDNE 229 (362)
T ss_pred -cEEEEEecccHhHhhhhhcc-ccceeeeec-------------------------------------CCceEEEecCCc
Confidence 56888988776555443322 112222211 245789999999
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYF--SPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~--sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
.|.+||... ..+...+.+|+.+|..+.+ .|++.+|+++|.||.|++||++..
T Consensus 230 ~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 999999654 5667788999999999884 568899999999999999998765
No 117
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.5e-26 Score=194.08 Aligned_cols=254 Identities=24% Similarity=0.404 Sum_probs=198.2
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
..++|..|.+.|.++.|+|....|++|+.|++|+++|.........+ -....+|.+++|+|.|++|+.|..-.++++|
T Consensus 164 vIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 164 VIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred eEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEE
Confidence 45788899999999999999999999999999999998653221111 1235689999999999999999999999999
Q ss_pred eCCCCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-Ccc-ccEEEEEeCCCC-
Q 010816 178 DPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHT-LAVTCVKWGGDG- 252 (500)
Q Consensus 178 d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~-~~v~~~~~~~~~- 252 (500)
|+++-++. ..+-.+|++.|+++.+++ .+..++++|.||.|++||--.++|+.++. .|. ..|.+..|..++
T Consensus 244 dv~T~QcfvsanPd~qht~ai~~V~Ys~-----t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 244 DVNTYQCFVSANPDDQHTGAITQVRYSS-----TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGK 318 (430)
T ss_pred eccceeEeeecCcccccccceeEEEecC-----CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCe
Confidence 99987653 235678999999998876 45689999999999999998899988775 453 568889999887
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
++++.+.|..+++|++.+|+.+..+.+.+..- ++ ..+.+.+..+..+++
T Consensus 319 yiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tg--------------------rq-----------~~rtqAvFNhtEdyV 367 (430)
T KOG0640|consen 319 YILSSGKDSTVKLWEISTGRMLKEYTGAGTTG--------------------RQ-----------KHRTQAVFNHTEDYV 367 (430)
T ss_pred EEeecCCcceeeeeeecCCceEEEEecCCccc--------------------ch-----------hhhhhhhhcCccceE
Confidence 68899999999999999999998876542110 00 001111222223333
Q ss_pred EEee-CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 333 VSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 333 ~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
+.-. ..+.+.-||.+..........+|.+.++++.-||.+.-+.++|.|..+|.|--
T Consensus 368 l~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 368 LFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred EccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 3322 34568889988766655566799999999999999999999999999999953
No 118
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=209.08 Aligned_cols=289 Identities=25% Similarity=0.353 Sum_probs=222.1
Q ss_pred cCCcccEEEEEEcCC-----------CCeEEEEeCCCcEEEEeCCCCc--ee-----E----------------------
Q 010816 105 AGHTEAVLSVAFSPD-----------GRQLASGSGDTTVRLWDLNTQT--PM-----F---------------------- 144 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~-----------~~~lat~~~d~~i~iwd~~~~~--~~-----~---------------------- 144 (500)
.-|+..|+.+.--|. ..-+.|++.|++||+||++... .+ .
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 358999999987662 1247899999999999986411 00 0
Q ss_pred --------EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE
Q 010816 145 --------KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA 216 (500)
Q Consensus 145 --------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~ 216 (500)
..-+....+.+++.+|+|++||+|..-|++++|++..-+... ...+|...|.++.|+.... ....++++
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~-~~eAHesEilcLeyS~p~~--~~kLLASa 522 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC-FMEAHESEILCLEYSFPVL--TNKLLASA 522 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh-heecccceeEEEeecCchh--hhHhhhhc
Confidence 000234569999999999999999999999999998765432 4688999999999875433 23578999
Q ss_pred eCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEEEeCCC-CeeEEEeecCC-----ceEEE
Q 010816 217 SKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKVWETTQ-GKLIRELKGHG-----HWVNS 286 (500)
Q Consensus 217 s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~-----~~v~~ 286 (500)
+.|+.|.++|+.. ...+.++.+|...|+++.|..+| .+++++.|..|.+ +..+ ......+..|. ..+..
T Consensus 523 srdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 523 SRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred cCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEE
Confidence 9999999999864 45677889999999999998765 5889999988753 3322 11112222221 22344
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCcEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQLVN 364 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~v~ 364 (500)
+++.|. ..++++++.|+.|+||++...++.... -.+|.+...
T Consensus 602 m~Vdp~------------------------------------~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lI 645 (1080)
T KOG1408|consen 602 MAVDPT------------------------------------SKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLI 645 (1080)
T ss_pred eeeCCC------------------------------------cceEEEEecccceEEEeccccceeeeecccccCCCceE
Confidence 444332 346899999999999998877654432 245667788
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 444 (500)
.+...|.|.|||+.+.|+++.++|..+|+++....||...|+.++| .+|.+.|
T Consensus 646 Kv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF---------------------------~nDCkHl 698 (1080)
T KOG1408|consen 646 KVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKF---------------------------LNDCKHL 698 (1080)
T ss_pred EEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeee---------------------------cccchhh
Confidence 8999999999999999999999999999999999999999998854 8999999
Q ss_pred EEEECCCcEEEEECCC
Q 010816 445 LSGSKDSTLKVWDIRT 460 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~ 460 (500)
++.+.||.|.||.+..
T Consensus 699 ISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 699 ISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeecCCceEEEEECch
Confidence 9999999999998753
No 119
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-25 Score=201.33 Aligned_cols=228 Identities=25% Similarity=0.406 Sum_probs=186.3
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
.++|.|++-+|+|.+|+.|...+.+.+|.+.+|..+..+.+|-+.|+|+.|+-||.+|+|||.||.|.+|.+..
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~------ 154 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD------ 154 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe------
Confidence 46899999999999999999999999999999999988899999999999999999999999999999998632
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC---CCeEEEEeCCCeEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG---DGVIYTGSQDCTIK 264 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~t~~~dg~i~ 264 (500)
++++..|+ +-+....+..|+.+|+++.... +..++|+|.|.+++
T Consensus 155 -------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k 201 (476)
T KOG0646|consen 155 -------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIK 201 (476)
T ss_pred -------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEE
Confidence 22222222 2234455678999999988754 45799999999999
Q ss_pred EEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 265 VWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 265 lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+||+..|..+..+.. ...+.+++++|. ...+..|+.+|.|.+.
T Consensus 202 ~wdlS~g~LLlti~f-p~si~av~lDpa------------------------------------e~~~yiGt~~G~I~~~ 244 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITF-PSSIKAVALDPA------------------------------------ERVVYIGTEEGKIFQN 244 (476)
T ss_pred EEEeccceeeEEEec-CCcceeEEEccc------------------------------------ccEEEecCCcceEEee
Confidence 999999988776643 345677777653 3467888999998877
Q ss_pred cCCCCC---------------CCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 345 EPAVSK---------------QPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 345 d~~~~~---------------~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
++.... .....+.||.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++..-.++|+.
T Consensus 245 ~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtn 324 (476)
T KOG0646|consen 245 LLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTN 324 (476)
T ss_pred ehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccce
Confidence 653222 12234678888 8999999999999999999999999999999999888777888888
Q ss_pred EEee
Q 010816 408 IRFE 411 (500)
Q Consensus 408 ~~~~ 411 (500)
+++.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 8773
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.1e-23 Score=190.01 Aligned_cols=334 Identities=20% Similarity=0.333 Sum_probs=239.9
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN- 187 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~- 187 (500)
.-|.|++|.++|. ++||..+|.|.||+..+.+-......|.+.|.++....+|. |+||+.|..|..||-.-.+....
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~e 324 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETE 324 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccccccccc
Confidence 6799999999998 78999999999999977665555558999999999999986 55699999999998321111000
Q ss_pred --------------------------------------cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 188 --------------------------------------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 188 --------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
...+|....-+++-.| ...++++++.|+.+++|+ .
T Consensus 325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-----s~~q~~T~gqdk~v~lW~--~ 397 (626)
T KOG2106|consen 325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-----SKNQLLTCGQDKHVRLWN--D 397 (626)
T ss_pred CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-----ChhheeeccCcceEEEcc--C
Confidence 0112333333333222 345799999999999999 3
Q ss_pred CeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816 230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (500)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (500)
.+...+ +.-..++.|+.|.|.|.++.|+..|..-+.|.++...+..-.. ..++..+.++|+
T Consensus 398 ~k~~wt-~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~----------------- 458 (626)
T KOG2106|consen 398 HKLEWT-KIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPD----------------- 458 (626)
T ss_pred CceeEE-EEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCC-----------------
Confidence 333322 1234678899999999999999999999999998666655554 778888888876
Q ss_pred HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
+..++.|+.|+.|++|.+........+. ..+...|+.+.||+|+++|.+-+-|-.|-.|.
T Consensus 459 -------------------G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 459 -------------------GAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred -------------------CCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 4579999999999999886655443333 22347899999999999999999999999995
Q ss_pred CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee-eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---ccc
Q 010816 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV-VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ---KLK 464 (500)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~---~~~ 464 (500)
......+.. +..+++....|.. ++... ......+..++-+.+.+++|+|...|.|++|...-. ...
T Consensus 520 ~~~~~~~ts-------~kDvkW~t~~c~l---GF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 520 PSECKQITS-------VKDVKWATYTCTL---GFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cccCcccce-------ecceeeeeeEEEE---EEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 443332222 3344443222211 00000 011112333345678889999999999999975432 223
Q ss_pred ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.++.+|.+.|.+|+|.-+...|.+.+.|..|+.|.
T Consensus 590 he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 590 HEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred eeeccccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 45678999999999999989999999999999996
No 121
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.7e-24 Score=183.21 Aligned_cols=237 Identities=19% Similarity=0.268 Sum_probs=190.6
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC---eEEEEeCCCeEEE
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG---VIYTGSQDCTIKV 265 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~t~~~dg~i~l 265 (500)
+..|...+++++.+ +..+++||.|-+|+|||++..+.+..+-.|.+.|+++.|.++. .|++|+.||.|.+
T Consensus 39 ~~aH~~sitavAVs-------~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 39 FSAHAGSITALAVS-------GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ccccccceeEEEec-------ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence 56788889888753 3579999999999999999999998899999999999998765 6999999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
|+...=.++..++.|...|+.++++|.. ...++-+.|+.+++|+
T Consensus 112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~------------------------------------KLALsVg~D~~lr~WN 155 (362)
T KOG0294|consen 112 WRVGSWELLKSLKAHKGQVTDLSIHPSG------------------------------------KLALSVGGDQVLRTWN 155 (362)
T ss_pred EEcCCeEEeeeecccccccceeEecCCC------------------------------------ceEEEEcCCceeeeeh
Confidence 9998888899999999999999998853 3456778999999999
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 425 (500)
+-..+.....-..+. -+.|.|+|.|.+++.++.+ .|-+|.+.+..+....... ..+.++.
T Consensus 156 LV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~-~r~l~~~---------------- 215 (362)
T KOG0294|consen 156 LVRGRVAFVLNLKNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENP-KRILCAT---------------- 215 (362)
T ss_pred hhcCccceeeccCCc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcc-ccceeee----------------
Confidence 866554322222232 3348999999999888776 5889988765543322211 1122221
Q ss_pred eeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE--cCCCCEEEEEeCCCcEEEecC
Q 010816 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~s~~~D~~v~iW~~ 500 (500)
--++..|++|+.|+.|++||.........+.+|..+|-++.+ .|++.+|+|+|.||.|++|+.
T Consensus 216 ------------~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 216 ------------FLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred ------------ecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 246789999999999999999998888999999999998874 677899999999999999974
No 122
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.7e-23 Score=194.21 Aligned_cols=245 Identities=22% Similarity=0.331 Sum_probs=198.1
Q ss_pred ccccCCc-ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 102 ATIAGHT-EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 102 ~~~~gh~-~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
.++.|+. ..|-+++|+ ++.+|++.+.+|+|.-||+.+.+++.......+.|.+++.+|.++.++.|+.||.+...+..
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 4455554 579999999 56678999999999999999999999998889999999999999999999999988888777
Q ss_pred CCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-------c-CccccEEEEEeCCC
Q 010816 181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------S-GHTLAVTCVKWGGD 251 (500)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-------~-~h~~~v~~~~~~~~ 251 (500)
.++... ..+...+..+.+++|+|.. .+++.|+.||.|++||+..+..+... . +...-|.++.|-.+
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~-----~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd 215 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTG-----TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD 215 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCc-----cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec
Confidence 665332 2345557889999998843 47999999999999999988766521 1 13345788888889
Q ss_pred CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
+.|++|..-|+|.+||...|.+++.+..|...|.+++..++ .++
T Consensus 216 ~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~------------------------------------~d~ 259 (691)
T KOG2048|consen 216 STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADN------------------------------------EDR 259 (691)
T ss_pred CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCC------------------------------------CCe
Confidence 99999999999999999999999999999999999987654 467
Q ss_pred EEEeeCCCeEEEEcCCCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 332 LVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
+++++.|+.+..+....... .......|...|.+++..++ .|.+|+.|..+.+=..+
T Consensus 260 vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~ 319 (691)
T KOG2048|consen 260 VFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSR 319 (691)
T ss_pred EEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEcccc
Confidence 89999999988876544322 22334567788999998876 89999999988776543
No 123
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-23 Score=170.55 Aligned_cols=243 Identities=25% Similarity=0.391 Sum_probs=199.4
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-----eEEecCCCCCEEEEEEcCC----CCEEEEEe-CCCe
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGHKNWVLCIAWSAD----GKHLVSGS-KAGE 173 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h~~~v~~v~~s~~----~~~l~s~~-~d~~ 173 (500)
-+-|.+.|.|.+|+|+|++||||+.|.+|++-..+...+ -..+.-|.+.|..++|-.+ |.+|++++ .|.+
T Consensus 85 ~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 356999999999999999999999999999987654322 2356679999999999653 45777765 4677
Q ss_pred EEEEeCCCCCcccccccCcccceEEE-EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--c-----cccEEE
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGI-SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--H-----TLAVTC 245 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h-----~~~v~~ 245 (500)
|.+=|...|+.. ..+.+|.+.|.++ .|+ +..|++|+.|.+||+||++-..|+.++.. | ...|.+
T Consensus 165 iy~tdc~~g~~~-~a~sghtghilalyswn-------~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaa 236 (350)
T KOG0641|consen 165 IYITDCGRGQGF-HALSGHTGHILALYSWN-------GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAA 236 (350)
T ss_pred EEEeecCCCCcc-eeecCCcccEEEEEEec-------CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEE
Confidence 777788777654 3578999988876 453 34799999999999999999999887642 1 356888
Q ss_pred EEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 246 VKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 246 ~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++..|.|. |++|-.|.+..+||++.++.++.+..|...|+++.++|.
T Consensus 237 v~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~-------------------------------- 284 (350)
T KOG0641|consen 237 VAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG-------------------------------- 284 (350)
T ss_pred EEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC--------------------------------
Confidence 99998875 677889999999999999999999999999999999874
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCC---CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
..+++++|.|..|++-|+... +.+......|.+.+..+.|+|..--+++.+.|+++.+|-+.
T Consensus 285 ----a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 285 ----AHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ----ceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 347899999999999987532 33455667899999999999999899999999999999753
No 124
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=8.3e-27 Score=218.74 Aligned_cols=255 Identities=27% Similarity=0.527 Sum_probs=214.6
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~ 242 (500)
..++....+-.+++||.+. +..|...|.++.- ....+.+++|+.|..+-+|.+....++..+.+|..+
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~-------~~~hsaav~~lk~-----~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp 72 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE-------FVAHSAAVGCLKI-----RKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP 72 (825)
T ss_pred cccceeeeeeccccccchh-------hhhhhhhhceeee-----eccceeeccCCCceeeccccccCCchhheeeccCCc
Confidence 3445555666788888653 3455555555432 123456889999999999999998888889999999
Q ss_pred EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 243 v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
|.|+.|+.+. .|++|+.+|+|++||+..++.++++.+|...+.+++|+|-
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~----------------------------- 123 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPY----------------------------- 123 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccc-----------------------------
Confidence 9999998765 5778999999999999999999999999999999998874
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
+.++++|+.|..+.+||.+. ..+.....+|...|.++.|+|+|+++++|++|..++|||+..|++...|++|
T Consensus 124 -------~~~~a~gStdtd~~iwD~Rk-~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~ 195 (825)
T KOG0267|consen 124 -------GEFFASGSTDTDLKIWDIRK-KGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSH 195 (825)
T ss_pred -------eEEeccccccccceehhhhc-cCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccc
Confidence 34678999999999999764 3455667789999999999999999999999999999999999999999999
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
++.+..+. |+|..-++++||.|++|++||+++.+.+.........|-++.|+|
T Consensus 196 e~~v~sle---------------------------~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~ 248 (825)
T KOG0267|consen 196 EGKVQSLE---------------------------FHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNP 248 (825)
T ss_pred cccccccc---------------------------cCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecC
Confidence 99987774 477788999999999999999999888877777788999999999
Q ss_pred CCCEEEEEeCCC
Q 010816 482 DGEKVASGGKDR 493 (500)
Q Consensus 482 dg~~l~s~~~D~ 493 (500)
+++.+.+|-.+.
T Consensus 249 ~~~~~~~G~q~s 260 (825)
T KOG0267|consen 249 DGKIVLSGEQIS 260 (825)
T ss_pred CceeeecCchhh
Confidence 999988886654
No 125
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.6e-23 Score=196.06 Aligned_cols=365 Identities=23% Similarity=0.397 Sum_probs=243.6
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-------EEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-------FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
+.+-||.+.|.++.|+|.+..|.+++.|.++.||...+..-+ -...|........-|+|+++.+++-++.|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 345699999999999999999999999999999987654322 2233455678899999999999999999999
Q ss_pred EEEeCCCCC--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCe---EEEEecCccccEEEEEe
Q 010816 175 QCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRK---CVICLSGHTLAVTCVKW 248 (500)
Q Consensus 175 ~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~---~~~~~~~h~~~v~~~~~ 248 (500)
++|..+... .....+.||.+.|.++.|.|. +..+++.|.|.+-|++--- ..+ .+.--+-|....+|+++
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~ps-----GeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~ 415 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPS-----GEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSF 415 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCC-----CCEEEEeccccceeeecccccccceeeecccccccccceeeeh
Confidence 999833221 122346899999999999984 4689999999999998643 111 11222347778999999
Q ss_pred CC-CCeEEEEeCCCeEEEEeCCCCee--EE-----Ee-----ecCCceEEEEEecCccee----eeccc-----------
Q 010816 249 GG-DGVIYTGSQDCTIKVWETTQGKL--IR-----EL-----KGHGHWVNSLALSTEYAL----RTGAF----------- 300 (500)
Q Consensus 249 ~~-~~~l~t~~~dg~i~lwd~~~~~~--~~-----~~-----~~~~~~v~~~~~~~~~~~----~~~~~----------- 300 (500)
-+ +-.+++|.....+|+|+....-. +. .. ...+..|..+-.+..... ..|..
T Consensus 416 vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~ 495 (764)
T KOG1063|consen 416 VNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAA 495 (764)
T ss_pred ccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeeccccc
Confidence 87 66788999999999999763210 00 00 011122333333322111 11111
Q ss_pred cCCCCCCCCHHH-HHHHH-HHhhhhhcC-----------CCCcEEEEeeCC-----CeEEEEcCCCCCCCceeeecccCc
Q 010816 301 DHTGKQYSSPEE-MKKAA-LERYNKIKG-----------NAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQL 362 (500)
Q Consensus 301 ~~~~~~~~~~~~-~~~~~-~~~~~~~~~-----------~~~~~~~s~s~d-----~~v~~wd~~~~~~~~~~~~~h~~~ 362 (500)
.+....-++.++ ..... .....++.| +.++.+++++.. ..|++|+.....+ ...+.+|+-.
T Consensus 496 ~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-~~~L~~HsLT 574 (764)
T KOG1063|consen 496 APCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-VQELEGHSLT 574 (764)
T ss_pred CchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-hheecccceE
Confidence 000000011111 11111 112223333 334455655433 2588998665443 3478899999
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
|+.++|||||++|++.|.|+++.+|....... ....+.|+.-|..- +|+
T Consensus 575 VT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdc---------------------------sW~ 627 (764)
T KOG1063|consen 575 VTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDC---------------------------SWS 627 (764)
T ss_pred EEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEc---------------------------ccC
Confidence 99999999999999999999999998754321 11234454444332 689
Q ss_pred CCCCEEEEEECCCcEEEEECCCc--cccc--cccCcccCEEEEEEcCC-----CCEEEEEeCCCcEEEec
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQ--KLKQ--DLPGHADEVFAVDWSPD-----GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~--~~~~--~~~~h~~~V~~l~~s~d-----g~~l~s~~~D~~v~iW~ 499 (500)
|++.+++++|.|++|++|..... +.+. ....+...|++++|.|- +..++.|-..|.|.+|.
T Consensus 628 pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~ 697 (764)
T KOG1063|consen 628 PDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWR 697 (764)
T ss_pred cccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEe
Confidence 99999999999999999998776 3332 23457889999998763 23567777889999996
No 126
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=7.7e-25 Score=195.37 Aligned_cols=304 Identities=18% Similarity=0.308 Sum_probs=217.6
Q ss_pred EeCCCCceeEEecCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCC---cccccccCcccceEEEEeeeeecCCC
Q 010816 135 WDLNTQTPMFKCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGK---PSGNPLSGHKKWITGISWEPVHLNAP 209 (500)
Q Consensus 135 wd~~~~~~~~~~~~h~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~ 209 (500)
+|+.+.......+-+.+.|.+++|+|.. +++|+|+.-|.|-+||+.+.. .....+..|...|.++.|+|...
T Consensus 171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~--- 247 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT--- 247 (498)
T ss_pred cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh---
Confidence 3444444444556789999999999964 578889999999999995322 12234678999999999999654
Q ss_pred CceEEEEeCCCcEEEEECCCCeE--EEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCee-EEEeecCCceEE
Q 010816 210 CRRFVSASKDGDARIWDVSLRKC--VICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVN 285 (500)
Q Consensus 210 ~~~~~s~s~dg~v~iwd~~~~~~--~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~ 285 (500)
.++++.|.||+|++-|++.... +..+........++.|+.+ +.++.++.=|...+||++++.. ...+.-|...|.
T Consensus 248 -s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 248 -SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred -hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 4799999999999999987643 2222223445566667654 4577788778999999998764 555667778899
Q ss_pred EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---CceeeecccCc
Q 010816 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQL 362 (500)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~ 362 (500)
.+++.|.. +..++++|.|++++|||++.-.. +......|...
T Consensus 327 sv~~NP~~-----------------------------------p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs 371 (498)
T KOG4328|consen 327 SVALNPVC-----------------------------------PWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS 371 (498)
T ss_pred eeecCCCC-----------------------------------chheeecccCcceeeeehhhhcCCCCcceecccccce
Confidence 99888752 45799999999999999875322 33455689999
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCC----CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGT----TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
|++..|||+|..|+|.+.|..|+|||.. .-....++. |...-. +..+. -...|.
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~----------RwlT~-----------fKA~W~ 429 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTG----------RWLTP-----------FKAAWD 429 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccCCccceee-ccCccc----------ccccc-----------hhheeC
Confidence 9999999998889999999999999984 112222111 111000 00000 012689
Q ss_pred CCCCEEEEEECCCcEEEEECCCccccccccCc-ccCEEE-EEEcCCCCEEEE-EeCCCcEEEec
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-ADEVFA-VDWSPDGEKVAS-GGKDRVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-~~~V~~-l~~s~dg~~l~s-~~~D~~v~iW~ 499 (500)
|+..++++|..-..|-|+|-..++.+..+-+- ...|.+ ..|+|-+..+++ ++..|.|+||+
T Consensus 430 P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 430 PDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred CCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999999999999999999988866554332 224554 389999885555 56678999985
No 127
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.93 E-value=1.6e-24 Score=200.74 Aligned_cols=288 Identities=24% Similarity=0.390 Sum_probs=200.2
Q ss_pred EEEEEcCC---CCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 112 LSVAFSPD---GRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 112 ~~~~~sp~---~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
++..|++. ...||.+..||.|.++|..... .+.....|.+.|..+.|.|....|++++.|.++++||++++
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s 132 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS 132 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence 34667653 4579999999999999986432 23445579999999999996678999999999999999988
Q ss_pred Ccccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-------EEEe------------------
Q 010816 183 KPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-------VICL------------------ 236 (500)
Q Consensus 183 ~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-------~~~~------------------ 236 (500)
+..+. ...||...|.+++|.|.+. ..|++|+.||.+.|||++-... ....
T Consensus 133 ~l~G~~~~~GH~~SvkS~cf~~~n~----~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~ 208 (720)
T KOG0321|consen 133 RLVGGRLNLGHTGSVKSECFMPTNP----AVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIR 208 (720)
T ss_pred eeecceeecccccccchhhhccCCC----cceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccc
Confidence 76653 4679999999999988654 4799999999999999864320 0000
Q ss_pred --cCcc----ccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816 237 --SGHT----LAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (500)
Q Consensus 237 --~~h~----~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (500)
..|. ..|+.+.|-.+..|++++. |+.|+|||+++.........
T Consensus 209 k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep------------------------------ 258 (720)
T KOG0321|consen 209 KWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP------------------------------ 258 (720)
T ss_pred ccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC------------------------------
Confidence 0111 1244455555556666555 77777777665322111000
Q ss_pred HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---cCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVASASFDKSIKL 386 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---~~~v~~l~~sp~g~~lasgs~Dg~i~l 386 (500)
.....+..| .-.+.++.....|.+|.+.+.|++|+.
T Consensus 259 -----------------------------------------~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 259 -----------------------------------------RGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred -----------------------------------------CcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 000001111 223677788888888888888999999
Q ss_pred EeCCCCc--eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-
Q 010816 387 WNGTTGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL- 463 (500)
Q Consensus 387 wd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~- 463 (500)
|++.+.. .+..+.++...-.-++- ..+|++.+|++|+.|..+++|.+.+.+.
T Consensus 298 ynm~s~s~sP~~~~sg~~~~sf~vks-------------------------~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 298 YNMRSLSISPVAEFSGKLNSSFYVKS-------------------------ELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EeccccCcCchhhccCcccceeeeee-------------------------ecCCCCceEeccCCCcceeeeeecCccCC
Confidence 9987643 23334443222111110 2489999999999999999999987654
Q ss_pred cccccCcccCEEEEEEcCC-CCEEEEEeCCCcEEEec
Q 010816 464 KQDLPGHADEVFAVDWSPD-GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 ~~~~~~h~~~V~~l~~s~d-g~~l~s~~~D~~v~iW~ 499 (500)
...+.||.-+|++++|.|. -.-++++++|.+++||.
T Consensus 353 ~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~ 389 (720)
T KOG0321|consen 353 PALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWR 389 (720)
T ss_pred hhhhhCcceEEEEEeeccccCCCceeeccCcceEEEe
Confidence 4567899999999999774 23578889999999996
No 128
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=196.43 Aligned_cols=242 Identities=25% Similarity=0.354 Sum_probs=177.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC----cccccccCcccceEEEEeeeeecCCCCceEEEEeCC
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK----PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD 219 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d 219 (500)
..+++|+..|.++++.|.|..|+|||.|-+|++||..... ..+.........|.+++|++. +..|+..+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~T-----g~~iLvvsg~ 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVT-----GDQILVVSGS 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCC-----CCeEEEEecC
Confidence 4678899999999999999999999999999999986432 222233444556788888873 4567777777
Q ss_pred CcEEEEECCCCeEE------------EEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeE-EEeecCCceE
Q 010816 220 GDARIWDVSLRKCV------------ICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLI-RELKGHGHWV 284 (500)
Q Consensus 220 g~v~iwd~~~~~~~------------~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~-~~~~~~~~~v 284 (500)
...+|+|-.-...+ ...+||...++|..|.|.. .++|++.||++|+||+..-+.. +.++
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik------ 309 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK------ 309 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe------
Confidence 88999985433222 2236899999999999864 6999999999999998654311 1111
Q ss_pred EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~ 364 (500)
... ..+..-.++
T Consensus 310 -------------------------------------------------------------~k~-------~~g~Rv~~t 321 (641)
T KOG0772|consen 310 -------------------------------------------------------------TKP-------AGGKRVPVT 321 (641)
T ss_pred -------------------------------------------------------------ecc-------CCCcccCce
Confidence 000 002223477
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCc---eEEEEeCCcc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816 365 HVYFSPDGQWVASASFDKSIKLWNGTTGK---FVAVFRGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~---~~~~~~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (500)
.++|+|||++||+|+.||+|.+|+..... ...+-++|.. .|.++ +||+
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi---------------------------~FS~ 374 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSI---------------------------SFSY 374 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEE---------------------------Eecc
Confidence 89999999999999999999999975422 1234456655 55555 6799
Q ss_pred CCCEEEEEECCCcEEEEECCCc-cccccccCcc--cCEEEEEEcCCCCEEEEEeC
Q 010816 440 DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHA--DEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~ 491 (500)
+|++|++-+.|+++++||++.. +.+....+-. -.-+.++||||.+.|++|+.
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 9999999999999999999863 4444443322 23478899999999999865
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.5e-23 Score=200.77 Aligned_cols=286 Identities=17% Similarity=0.310 Sum_probs=216.0
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.+|+...+.|+|.|+|++|.+++.||.|++|+.... .....+..+...|.+++- ++.+|++|+.+++|.+|...++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 469999999999999999999999999999986543 222222237777888776 45699999999999999987775
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCe
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCT 262 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~ 262 (500)
... .+..-..++..++++ .++..++.||.|-.|++-+.........+++|..+|.++.|+|++ .|++.+-||.
T Consensus 88 ~~~-iL~Rftlp~r~~~v~-----g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~ 161 (933)
T KOG1274|consen 88 EDT-ILARFTLPIRDLAVS-----GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGK 161 (933)
T ss_pred ccc-eeeeeeccceEEEEe-----cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCce
Confidence 421 233344555566554 356689999999999999999999999999999999999999987 5777889999
Q ss_pred EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~ 342 (500)
|++||+.++.+...+.+-..
T Consensus 162 v~iw~~~~~~~~~tl~~v~k------------------------------------------------------------ 181 (933)
T KOG1274|consen 162 VQIWDLQDGILSKTLTGVDK------------------------------------------------------------ 181 (933)
T ss_pred EEEEEcccchhhhhcccCCc------------------------------------------------------------
Confidence 99999988765544332100
Q ss_pred EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (500)
Q Consensus 343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 422 (500)
.... .....+..++|+|+|..||..+.|+.|++|+..+++....++.....
T Consensus 182 ----~n~~-------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~s------------------ 232 (933)
T KOG1274|consen 182 ----DNEF-------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSS------------------ 232 (933)
T ss_pred ----cccc-------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccc------------------
Confidence 0000 00234677899999999999999999999999999887776642110
Q ss_pred eeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 423 YCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 423 ~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
...+.+.|+|+|++||+++.||.|-|||.++.+. ......|.+++|.|+...|-.-..-|+..+|
T Consensus 233 -------s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 233 -------SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred -------cceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 1123347999999999999999999999988332 2234689999999998877665555555444
No 130
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.93 E-value=1e-23 Score=195.25 Aligned_cols=138 Identities=30% Similarity=0.539 Sum_probs=110.8
Q ss_pred eCCCeEEEEcCCCCCC-Cceeeec--ccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCc-------eEEEEeCCccc
Q 010816 336 SDDFTMFLWEPAVSKQ-PKTRMTG--HQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGK-------FVAVFRGHVGP 404 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~-~~~~~~~--h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~-------~~~~~~~h~~~ 404 (500)
+..|.|-|+++..... +...+.+ ....|+.+.|+| |...||.++.||.|++|.+..+. .-.++.+|...
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK 679 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK 679 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce
Confidence 3455666776654322 1111211 235688999999 78899999999999999987643 34678899999
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
|+.++|..+ ....|++++.|.+|++||+++.+....+.||.+.|++++|||||+
T Consensus 680 I~slRfHPL--------------------------AadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr 733 (1012)
T KOG1445|consen 680 ITSLRFHPL--------------------------AADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGR 733 (1012)
T ss_pred EEEEEecch--------------------------hhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCc
Confidence 999977432 245899999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEec
Q 010816 485 KVASGGKDRVLKLWM 499 (500)
Q Consensus 485 ~l~s~~~D~~v~iW~ 499 (500)
.+|+.+.||+|++++
T Consensus 734 ~~AtVcKDg~~rVy~ 748 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYE 748 (1012)
T ss_pred ceeeeecCceEEEeC
Confidence 999999999999985
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=2.7e-22 Score=187.54 Aligned_cols=285 Identities=17% Similarity=0.182 Sum_probs=196.3
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEE
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 199 (500)
+.+++++.|+.+++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||..+++.... +..+.. +..+
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~-~~~~ 78 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT-LPSGPD-PELF 78 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe-ccCCCC-ccEE
Confidence 5688999999999999999888777776544 6789999999876 5677899999999988765432 222222 3455
Q ss_pred EeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCC-eEEEEeCCCCeeEEE
Q 010816 200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDC-TIKVWETTQGKLIRE 276 (500)
Q Consensus 200 ~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg-~i~lwd~~~~~~~~~ 276 (500)
.|.| +++.+ ++++.|+.+++||+++.+.+..+..+ ..+.++.|++++. +++++.++ .+.+||..+++....
T Consensus 79 ~~~~-----~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~ 152 (300)
T TIGR03866 79 ALHP-----NGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDN 152 (300)
T ss_pred EECC-----CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEE
Confidence 6655 33444 55667899999999988877666432 3457789999874 55566554 577789888776554
Q ss_pred eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEEEcCCCCCCCcee
Q 010816 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTR 355 (500)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~wd~~~~~~~~~~ 355 (500)
+... .....++++++ +..+ +++..++.+++||....... ..
T Consensus 153 ~~~~-~~~~~~~~s~d------------------------------------g~~l~~~~~~~~~v~i~d~~~~~~~-~~ 194 (300)
T TIGR03866 153 VLVD-QRPRFAEFTAD------------------------------------GKELWVSSEIGGTVSVIDVATRKVI-KK 194 (300)
T ss_pred EEcC-CCccEEEECCC------------------------------------CCEEEEEcCCCCEEEEEEcCcceee-ee
Confidence 3322 12234444443 2344 45557999999998654321 11
Q ss_pred eec-----ccC--cEEEEEECCCCCEEEE-EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816 356 MTG-----HQQ--LVNHVYFSPDGQWVAS-ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (500)
Q Consensus 356 ~~~-----h~~--~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 427 (500)
+.. +.. ....++|+|++++++. .+.++.+.+||..+++.+..+. +...+.++
T Consensus 195 ~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~------------------- 254 (300)
T TIGR03866 195 ITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQL------------------- 254 (300)
T ss_pred eeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceE-------------------
Confidence 111 111 2346889999998544 4556789999999888765443 22233333
Q ss_pred ccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 428 MSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 428 ~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
+|+|+|++|+++ +.++.|++||+++++.+..++.. ...++++++|
T Consensus 255 --------~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 255 --------AFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred --------EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 679999999886 46899999999999988887654 4558888875
No 132
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.8e-24 Score=188.92 Aligned_cols=287 Identities=23% Similarity=0.309 Sum_probs=210.0
Q ss_pred EEeCCC-cEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCCCCCcccccccCcccceEEEEe
Q 010816 125 SGSGDT-TVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKA-GELQCWDPQTGKPSGNPLSGHKKWITGISW 201 (500)
Q Consensus 125 t~~~d~-~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~ 201 (500)
+++.|. ++.+||+.++.....+++- ...-.++.. -++.+++++... ..|.+|.+....... ...--.+.|.++.-
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s 89 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQLKRPLLHVWEILKKDQVV-QYIVLPGPVHALAS 89 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecccCccccccccCchhhhh-hhcccccceeeeec
Confidence 344554 5999999999888777654 111111111 133677777654 468999886543222 11112345666654
Q ss_pred eeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC---------C
Q 010816 202 EPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---------Q 270 (500)
Q Consensus 202 ~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~---------~ 270 (500)
.| +..|+.+| -.|.+++|.+.+|..+..+.+|-..|+|+.|+.|+ .|++||.||.|.+|.+. +
T Consensus 90 ~n------~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~ 163 (476)
T KOG0646|consen 90 SN------LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHS 163 (476)
T ss_pred CC------CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCC
Confidence 33 23455555 99999999999999999999999999999999887 68999999999999763 2
Q ss_pred CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~ 350 (500)
.+.++.+..|.-+|..+.+.... ...++++.|.|.++++||+....
T Consensus 164 ~~p~~~f~~HtlsITDl~ig~Gg----------------------------------~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 164 VKPLHIFSDHTLSITDLQIGSGG----------------------------------TNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred ccceeeeccCcceeEEEEecCCC----------------------------------ccceEEEecCCceEEEEEeccce
Confidence 34566778888888887665421 24579999999999999987654
Q ss_pred CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC----------------ceEEEEeCCcc--cEEEEEeee
Q 010816 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG----------------KFVAVFRGHVG--PVYQIRFEL 412 (500)
Q Consensus 351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~----------------~~~~~~~~h~~--~v~~~~~~~ 412 (500)
..... .-+..+.+++.+|-++.+..|+.+|.|.+.++... ..+..+.||.+ +|+++
T Consensus 210 LLlti--~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcL---- 283 (476)
T KOG0646|consen 210 LLLTI--TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCL---- 283 (476)
T ss_pred eeEEE--ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEE----
Confidence 33222 23567999999999999999999999999876532 23445666665 55555
Q ss_pred eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
+.+.||.+|++|+.||.|.|||+.+.++++++.--.++|+.+.+.|=
T Consensus 284 -----------------------ais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 284 -----------------------AISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred -----------------------EEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 66889999999999999999999999999888756788988888553
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-25 Score=211.28 Aligned_cols=221 Identities=28% Similarity=0.518 Sum_probs=190.7
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+..|...|.++..-..++.+++|+.|..+-+|.+....++..+.+|+.+|.||.|+++..+|++|+.+|+|++||++.+
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 34568899999999888899999999999999999888777789999999999999999999999999999999999988
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg 261 (500)
+.+. .+.+|...+.++.|+|. +.++++|+.|+.+++||.+..-|...+.+|...|.++.|+|+| +++.|+.|.
T Consensus 103 k~vr-tLtgh~~~~~sv~f~P~-----~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 103 KIVR-TLTGHLLNITSVDFHPY-----GEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred hhhh-hhhccccCcceeeeccc-----eEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 7654 68899999999999885 3578999999999999999999999999999999999999999 678889999
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
++++||+..|+.+.+++
T Consensus 177 tvki~d~~agk~~~ef~--------------------------------------------------------------- 193 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFK--------------------------------------------------------------- 193 (825)
T ss_pred eeeeecccccccccccc---------------------------------------------------------------
Confidence 99999998877655443
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
+|...+..+.|+|..-++++||.|+++++||+++-+.+...+.....|.+.
T Consensus 194 ----------------~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~ 244 (825)
T KOG0267|consen 194 ----------------SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSL 244 (825)
T ss_pred ----------------cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceee
Confidence 344556667788888889999999999999999888776666555555555
No 134
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=6.6e-23 Score=183.26 Aligned_cols=287 Identities=14% Similarity=0.262 Sum_probs=213.5
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCCc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+.|++++|||....|.+|+.|++++||.+.... .+..+.--.-+|.+..|.|+|. .+++++.......||+.+++.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4679999999999999999999999999987543 3444434467899999999998 899999999999999998875
Q ss_pred ccc-cccCccc-ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC
Q 010816 185 SGN-PLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC 261 (500)
Q Consensus 185 ~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg 261 (500)
.+. +..++.. .+... ..+.++..++..|..|.|.+....++..+..++ -.+.|..+.|++++ .|++.+.+|
T Consensus 293 ~k~~~~~g~e~~~~e~F-----eVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~G 366 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERF-----EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTG 366 (514)
T ss_pred ccccCCCCcccchhhee-----EecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCc
Confidence 331 2334432 22222 223355688999999999999888887766554 24678899999887 477788899
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
.|.+||+++..+++.+... |.|
T Consensus 367 eV~v~nl~~~~~~~rf~D~----------------------------------------------------------G~v 388 (514)
T KOG2055|consen 367 EVYVWNLRQNSCLHRFVDD----------------------------------------------------------GSV 388 (514)
T ss_pred eEEEEecCCcceEEEEeec----------------------------------------------------------Ccc
Confidence 9999999887665543311 111
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 421 (500)
.-++++.|++|.+||+||..|.|.|||..+... .+...|+
T Consensus 389 --------------------~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~----s~~PkPi---------------- 428 (514)
T KOG2055|consen 389 --------------------HGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA----STNPKPI---------------- 428 (514)
T ss_pred --------------------ceeeeeecCCCceEEeccCcceEEEeccchhhc----cCCCCch----------------
Confidence 024678889999999999999999999765311 0011111
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEEC--CCcEEEEECCCccccccccCcc---cCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
..+.+....++.+.|++++++||.+|. +..+|+-.+.+......++.-+ +.|++++|||.|-+||.|..+|+|.
T Consensus 429 -k~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~ 507 (514)
T KOG2055|consen 429 -KTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVH 507 (514)
T ss_pred -hhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCcee
Confidence 112233344555678999999998874 6789999998888777776543 4689999999999999999999999
Q ss_pred Eec
Q 010816 497 LWM 499 (500)
Q Consensus 497 iW~ 499 (500)
+|.
T Consensus 508 l~k 510 (514)
T KOG2055|consen 508 LFK 510 (514)
T ss_pred eEe
Confidence 996
No 135
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=5e-22 Score=185.77 Aligned_cols=391 Identities=19% Similarity=0.240 Sum_probs=244.5
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
+..-.++|++++.+|.+..++.|+.||.+.+.+...+...+ .+...++.|.+++|+|++..|++|+.||.|++||..+
T Consensus 106 ~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 106 IDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred ecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 34567899999999999999999999977777776655433 2334568999999999999999999999999999988
Q ss_pred CCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEE
Q 010816 182 GKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTG 257 (500)
Q Consensus 182 ~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~ 257 (500)
+..... .+.+....-..+.|+-... .+..+++|.+.|+|++||...+..+..+..|.+.|.|++-+++ ..++++
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsa 263 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSA 263 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEc
Confidence 865430 1222222223455554332 3468999999999999999999999999999999999999876 689999
Q ss_pred eCCCeEEEEeCCCCee--E--EEeecCCceEEEEEecCcceeeeccccCCCCCCC-----CHHHHHHHHHHhhhhhcCCC
Q 010816 258 SQDCTIKVWETTQGKL--I--RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS-----SPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 328 (500)
+-|+.|..|...+++. + .....|.+.|++++..+. ++..++.|..-.... ...............+...+
T Consensus 264 Gvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~ 342 (691)
T KOG2048|consen 264 GVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP 342 (691)
T ss_pred cCCCceEEEEecCCccceeeeccccCCcccceeeeeecc-eEEecceeeEEEEccccccCchhhhccccccccceeecCc
Confidence 9999998887765532 2 233568889999988766 444444432211111 00000000000000011112
Q ss_pred CcEEEEeeCCCeEEEEcCCCC----C-C---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 010816 329 PERLVSGSDDFTMFLWEPAVS----K-Q---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR- 399 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~----~-~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~- 399 (500)
.++++.--.+..+.+|.+... . . ...........|.|.+.||+|++||.+.-- .+++|.++.-..+....
T Consensus 343 ~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v 421 (691)
T KOG2048|consen 343 ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINV 421 (691)
T ss_pred cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEe
Confidence 222322223333444443221 0 0 011112234568999999999999987643 46666654311111100
Q ss_pred ----CCcccEEEEEee-----------------eeeeecCCCCcee--eeec--cccceeeEEcCCCCEEEEEECCCcEE
Q 010816 400 ----GHVGPVYQIRFE-----------------LIYCFRYPSNFYC--VVDM--SCCMSLYSWSADSRLLLSGSKDSTLK 454 (500)
Q Consensus 400 ----~h~~~v~~~~~~-----------------~~~~~~~~~~~~~--~~~~--~~~~~~~~~s~~~~~l~s~s~d~~v~ 454 (500)
....+...+.|. ... ...++.... .... -..++.++.|++|++||+.+.+|.|.
T Consensus 422 ~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e-l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~ 500 (691)
T KOG2048|consen 422 DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE-LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIF 500 (691)
T ss_pred ccchhhhccceeeEEEecCceEEEEecccceeEEEE-ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEE
Confidence 000011111110 000 001111000 0111 12356677899999999999999999
Q ss_pred EEECCCccccccccCcccCEEEEEEc-CCCCEEEEEeCCCcEEEec
Q 010816 455 VWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 455 iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~~D~~v~iW~ 499 (500)
+|++++++...-...-...|++.+++ ++...|+.+.+|+++.-++
T Consensus 501 v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 501 VYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred EEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 99999987654333344789999999 5677899999999987665
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.3e-24 Score=205.64 Aligned_cols=238 Identities=20% Similarity=0.358 Sum_probs=192.0
Q ss_pred EEEEEcC-CCCeEEEEeCCCcEEEEeCCC---CceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 112 LSVAFSP-DGRQLASGSGDTTVRLWDLNT---QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 112 ~~~~~sp-~~~~lat~~~d~~i~iwd~~~---~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
..++|+. +.++|||++..|.|.+||+.. .+.+..+..|+..+.++.|++. ..+|+|||.||+|++||++..+...
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc
Confidence 3456653 467999999999999999986 5556677899999999999985 5689999999999999998765433
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIK 264 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~ 264 (500)
.+.+....|..+.|+|.. ...|+++...|.+++||++. .++...+.+|+++|.|+.|+|++ .|+|||+|++|+
T Consensus 171 -t~~~nSESiRDV~fsp~~----~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 171 -TFRSNSESIRDVKFSPGY----GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred -cccccchhhhceeeccCC----CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEE
Confidence 455677889999999854 45899999999999999985 46777889999999999999976 689999999999
Q ss_pred EEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CCCeE
Q 010816 265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DDFTM 341 (500)
Q Consensus 265 lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d~~v 341 (500)
|||..+++..... .....+|..+.+-|+.. ..|++++ .|-.|
T Consensus 246 iWd~t~~~~~~~~tInTiapv~rVkWRP~~~-----------------------------------~hLAtcsmv~dtsV 290 (839)
T KOG0269|consen 246 IWDMTDSRAKPKHTINTIAPVGRVKWRPARS-----------------------------------YHLATCSMVVDTSV 290 (839)
T ss_pred EEeccCCCccceeEEeecceeeeeeeccCcc-----------------------------------chhhhhhccccceE
Confidence 9999866543222 12345677788777532 3455554 47889
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~ 389 (500)
++||++..-.|...+..|.+.++.++|.. |-..|.+++.|++|..-..
T Consensus 291 ~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 291 HVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred EEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhh
Confidence 99999988888999999999999999976 5568889999998765433
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=9.4e-23 Score=196.85 Aligned_cols=248 Identities=19% Similarity=0.378 Sum_probs=189.0
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
.|+..-+.|+|.|+|+.|++|+.||.|++|+...-......+..+...|.+++- ...+|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~-------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC-------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee-------cccceEEeeccceEEEeeC
Confidence 688889999999999999999999999999875542222223335566666653 2348999999999999998
Q ss_pred CCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCC
Q 010816 228 SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (500)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (500)
..+..-..+..-+.++++++++.+| .++.||.|-.|++-+..+..
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s---------------------------------- 129 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS---------------------------------- 129 (933)
T ss_pred CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----------------------------------
Confidence 8776544444456678888888776 45667777777766543321
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l 386 (500)
....+.+|..+|.+|.|+|++.+||+.+-||.|++
T Consensus 130 ---------------------------------------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 130 ---------------------------------------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ---------------------------------------------hheeecccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 12345688999999999999999999999999999
Q ss_pred EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 466 (500)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 466 (500)
||++++.+..++.+-.. .+ .+ ........++|+|+|..|+..+.|+.|++|+....+..+.
T Consensus 165 w~~~~~~~~~tl~~v~k-~n--~~----------------~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~ 225 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDK-DN--EF----------------ILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFK 225 (933)
T ss_pred EEcccchhhhhcccCCc-cc--cc----------------cccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehee
Confidence 99999988776654210 00 00 0022234468999999999999999999999999888877
Q ss_pred ccC--cccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 467 LPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 467 ~~~--h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+.. |...+..+.|+|.|+|||+++.||.|.||+.
T Consensus 226 Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 226 LRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred ecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 765 3445889999999999999999999999974
No 138
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.4e-22 Score=172.78 Aligned_cols=279 Identities=18% Similarity=0.345 Sum_probs=198.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
-.|+.|++.|.+||.|+.||.|.|||+.+...-..+.+|..+|.|++||+||.+|+++|.|..|.+||+..|.+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri-- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI-- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE--
Confidence 569999999999999999999999999998877778899999999999999999999999999999999999865432
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~~~~~~~~~-~l~t~~~dg~i~l 265 (500)
....+|....|+|... +.+++.-.+..-.+-++..++....-... +..-.+..|...| +|++|...|.+.+
T Consensus 104 rf~spv~~~q~hp~k~----n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv 179 (405)
T KOG1273|consen 104 RFDSPVWGAQWHPRKR----NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV 179 (405)
T ss_pred EccCccceeeeccccC----CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE
Confidence 2356788888888543 24554444444444444432211100000 1111223455444 7999999999999
Q ss_pred EeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 266 WETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+|..+-+++..++... ..|..+-++. .++.++.-+.|+.|+.+
T Consensus 180 ~~a~t~e~vas~rits~~~IK~I~~s~------------------------------------~g~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 180 YDAETLECVASFRITSVQAIKQIIVSR------------------------------------KGRFLIINTSDRVIRTY 223 (405)
T ss_pred EecchheeeeeeeechheeeeEEEEec------------------------------------cCcEEEEecCCceEEEE
Confidence 9999988887776554 4555554443 25678899999999999
Q ss_pred cCCCCCC--------Cceeee--cccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCccc-EEEEEeee
Q 010816 345 EPAVSKQ--------PKTRMT--GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFEL 412 (500)
Q Consensus 345 d~~~~~~--------~~~~~~--~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~ 412 (500)
+...-.. +..++. -..-.-.+++||.+|.+++.|+. ...++||.-..|.+++++.|.++. ...+
T Consensus 224 e~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV---- 299 (405)
T KOG1273|consen 224 EISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDV---- 299 (405)
T ss_pred ehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeec----
Confidence 8642110 011110 01122357889999999987764 467999999999999999998754 3333
Q ss_pred eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.|.|-...+++- ..|.|++|...
T Consensus 300 -----------------------~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 300 -----------------------NWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred -----------------------ccccceeeeeec-cCCceEEEEee
Confidence 456666566666 67889999754
No 139
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=6.1e-23 Score=178.99 Aligned_cols=243 Identities=26% Similarity=0.479 Sum_probs=192.9
Q ss_pred ccCCcccEEEEEEcCCCC--eEEEEeCCCcEEEEeCCC----------------CceeEEecCCCCCEEEEEEcCC-CCE
Q 010816 104 IAGHTEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNT----------------QTPMFKCTGHKNWVLCIAWSAD-GKH 164 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~--~lat~~~d~~i~iwd~~~----------------~~~~~~~~~h~~~v~~v~~s~~-~~~ 164 (500)
..+|.+.+..+.-++-++ ++|+=+..|.|.|||+.. .++++++.+|.+.=+.++|||- ...
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 457889999998888664 556667899999999742 3678889999998999999993 235
Q ss_pred EEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCc
Q 010816 165 LVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGH 239 (500)
Q Consensus 165 l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h 239 (500)
|+||.--+.|++|.+.+|.- -..++.+|+..|..++|+|... ..|++||-||+|+|||++.+ .++.. +.|
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~----~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh 301 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED----GVFASCSCDGSIRIWDIRSGPKKAAVST-KAH 301 (440)
T ss_pred cccCccccceEeeeeccCceeecCccccccccchhhhccCCccC----ceEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence 88888889999999988753 3457888999999999999653 48999999999999999987 45544 899
Q ss_pred cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCC---CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 240 TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 240 ~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
...|..+.|+... .|++|+.||+++|||+++ ++.+..++.|..+|+++.++|..
T Consensus 302 ~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e---------------------- 359 (440)
T KOG0302|consen 302 NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHE---------------------- 359 (440)
T ss_pred CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEecccc----------------------
Confidence 9999999998653 689999999999999975 46788999999999999998742
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---------------Cceeeecc--cCcEEEEEECCC-CCEEEE
Q 010816 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------------PKTRMTGH--QQLVNHVYFSPD-GQWVAS 377 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---------------~~~~~~~h--~~~v~~l~~sp~-g~~las 377 (500)
...+++++.|..|.+||+..... +.+.+.-| +..+..|.|+++ ..+|++
T Consensus 360 -------------~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvs 426 (440)
T KOG0302|consen 360 -------------DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVS 426 (440)
T ss_pred -------------CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEE
Confidence 34688899999999999764322 22233334 355888999986 467888
Q ss_pred EeCCCcEEEE
Q 010816 378 ASFDKSIKLW 387 (500)
Q Consensus 378 gs~Dg~i~lw 387 (500)
.+.|| +.||
T Consensus 427 Ta~dG-fnVf 435 (440)
T KOG0302|consen 427 TAIDG-FNVF 435 (440)
T ss_pred ecccc-eeEE
Confidence 88887 3443
No 140
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-22 Score=182.38 Aligned_cols=284 Identities=18% Similarity=0.208 Sum_probs=205.7
Q ss_pred CCCcEEEEeCCCCceeEEecCC--CCCEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCC--Ccc-cccccCcc-cceEEEE
Q 010816 128 GDTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGK-HLVSGSKAGELQCWDPQTG--KPS-GNPLSGHK-KWITGIS 200 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~~~~--~~~-~~~~~~~~-~~v~~~~ 200 (500)
....++|||...-...-.+..| .-.+.++.|+.... .+++.+.|+.+++|.-... ... .....+.. ..|.++.
T Consensus 10 ~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 10 TGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred cCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhh
Confidence 3346999998643222112112 23488999987653 2344566889999963221 111 01111211 1222222
Q ss_pred eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
+ ..++++|+..+.|+|||++...+...+++|...|+++.|+. |.+|++++..|.|.|..+.++.....+..
T Consensus 90 ~--------S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 90 Q--------SLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred c--------ceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 2 24789999999999999998888888999999999999974 66899999999999999988876666654
Q ss_pred C-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816 280 H-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (500)
Q Consensus 280 ~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~ 358 (500)
. ++.|+-+.+++. ....|.+++++|+|.+||.........-...
T Consensus 162 ~sgqsvRll~ys~s-----------------------------------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~ 206 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPS-----------------------------------KRFLLSIASDKGAVTLWDVQGMSPIFHASEA 206 (673)
T ss_pred CCCCeEEEeecccc-----------------------------------cceeeEeeccCCeEEEEeccCCCcccchhhh
Confidence 4 455555555442 2346788999999999998766665666788
Q ss_pred ccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 359 HQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 359 h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
|..+...++|+| +..+|++.+.|..|.+||....+....+. .+...+.++|
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----------------------------y~~Plstvaf 258 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----------------------------YSHPLSTVAF 258 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceee----------------------------ecCCcceeee
Confidence 999999999999 46788999999999999988655443322 1122344588
Q ss_pred cCCCCEEEEEECCCcEEEEECCC-ccccccccCcccCEEEEEEcCC
Q 010816 438 SADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~d 482 (500)
+++|.+|++|...|.|..||++. ...+..+..|...|++++|-|.
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s 304 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPS 304 (673)
T ss_pred cCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeec
Confidence 99999999999999999999986 4567888899999999999775
No 141
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.91 E-value=7.5e-22 Score=173.97 Aligned_cols=318 Identities=23% Similarity=0.368 Sum_probs=215.5
Q ss_pred cccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCce---------eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP---------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 108 ~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~---------~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
..+|.++.|.+++. .||||+.|..|+||-++...+ +..+..|.+.|+++.|+|+|++||||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45799999999877 999999999999998754321 23577899999999999999999999999999999
Q ss_pred eCC--------C-----C--CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc
Q 010816 178 DPQ--------T-----G--KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA 242 (500)
Q Consensus 178 d~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~ 242 (500)
... + . ..+...+.+|...+..++|.|. ...+++++.|..+++||+..++....+.+|...
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d-----~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y 167 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD-----SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY 167 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC-----CceeeeeeccceEEEEEeccceeEeeccccccc
Confidence 765 2 0 1122346778899999999874 357899999999999999999999999999999
Q ss_pred EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 243 VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 243 v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+.-++|.+-+ ++++-+.|...+.+.+...+.++. +...+.-. ...
T Consensus 168 vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~---~~~~~m~~----------~~~--------------------- 213 (434)
T KOG1009|consen 168 VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR---HGLDIMPA----------KAF--------------------- 213 (434)
T ss_pred cceeecchhhhhhhhhccCcccceeeeeeeeeeee---eeeeEeee----------ccc---------------------
Confidence 9999999865 577778888666666543322221 11100000 000
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC----CC-----cEEEEeCCC-
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF----DK-----SIKLWNGTT- 391 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~----Dg-----~i~lwd~~~- 391 (500)
+ .......+++.-... ......++|+|+|.+|++.+. ++ ..++|+-..
T Consensus 214 -----~-------~~e~~s~rLfhDeTl----------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l 271 (434)
T KOG1009|consen 214 -----N-------EREGKSTRLFHDETL----------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL 271 (434)
T ss_pred -----C-------CCCcceeeeeecCch----------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc
Confidence 0 001112223321111 122456789999999987532 22 235554432
Q ss_pred CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-c
Q 010816 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-H 470 (500)
Q Consensus 392 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h 470 (500)
.+.+..+.+-..+...+++..++.-.-|...... +.--|-+..+|.+.. +.|++||.++...+..... |
T Consensus 272 ~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~---------~~~lpyrlvfaiAt~-~svyvydtq~~~P~~~v~nih 341 (434)
T KOG1009|consen 272 KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF---------LFVLPYRLVFAIATK-NSVYVYDTQTLEPLAVVDNIH 341 (434)
T ss_pred cCceeecCCCCcceEEEEeeeeEEEecccccccc---------ccccccceEEEEeec-ceEEEeccccccceEEEeeee
Confidence 2345556666667777777655432211110000 001244455666655 4699999998777665544 8
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 471 ADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
...++.++|++||..|+..|.||..-
T Consensus 342 y~~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 342 YSAITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eeeecceeecCCCcEEEEeccCCceE
Confidence 89999999999999999999998654
No 142
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.90 E-value=4.9e-22 Score=170.45 Aligned_cols=313 Identities=22% Similarity=0.390 Sum_probs=215.5
Q ss_pred ccCCcccEEEEEEcC----CCCeEEEEeCCCcEEEEeCCCCceeEEe-----cCCCCCEEEEEEcCC----CCEEEEEeC
Q 010816 104 IAGHTEAVLSVAFSP----DGRQLASGSGDTTVRLWDLNTQTPMFKC-----TGHKNWVLCIAWSAD----GKHLVSGSK 170 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp----~~~~lat~~~d~~i~iwd~~~~~~~~~~-----~~h~~~v~~v~~s~~----~~~l~s~~~ 170 (500)
..+|..+|..++|++ +...+++..+...+.||.......+..+ ..|......++|+-| ..+||.|+.
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~ 113 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGY 113 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecc
Confidence 457899999999985 2333444445567899987654322211 246777888888754 347889999
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVK 247 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~ 247 (500)
-|.|++.|+.+++... .+.+|...|+.+.+.|... ++++++|.|.+||+|++++..|+..+. ||...|.++.
T Consensus 114 ~GvIrVid~~~~~~~~-~~~ghG~sINeik~~p~~~----qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 114 LGVIRVIDVVSGQCSK-NYRGHGGSINEIKFHPDRP----QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVD 188 (385)
T ss_pred eeEEEEEecchhhhcc-ceeccCccchhhhcCCCCC----cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEE
Confidence 9999999999887655 4789999999999998643 489999999999999999999998875 6999999999
Q ss_pred eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 248 ~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
|+.++ .|++++.|.+|++|++...+....++. +..++++ .+..++..+
T Consensus 189 ~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~------s~~~~~~---------~t~~pfpt~---------------- 237 (385)
T KOG1034|consen 189 FSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL------SITYSPN---------KTTRPFPTP---------------- 237 (385)
T ss_pred EcCCCCeeeccCCcceEEEEecChhHHhhhhhh------hcccCCC---------CccCcCCcc----------------
Confidence 99877 689999999999999875332111110 0111111 000001000
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceE----------
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFV---------- 395 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~~---------- 395 (500)
...+.+. ..-.-|...|-|+.|- |.++++-|-++.|..|... -++.+
T Consensus 238 -------------~~~fp~f-------st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~ 295 (385)
T KOG1034|consen 238 -------------KTHFPDF-------STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESAT 295 (385)
T ss_pred -------------ccccccc-------cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccce
Confidence 0000000 0112366777777775 6889999999999999872 12111
Q ss_pred ---EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc--ccccC-
Q 010816 396 ---AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK--QDLPG- 469 (500)
Q Consensus 396 ---~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~- 469 (500)
..+.-....++-++ .++.|-+++||.|...|.|.+||++..+.. .++.-
T Consensus 296 Ti~~~~~~~~c~iWfir-------------------------f~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s 350 (385)
T KOG1034|consen 296 TILGEFDYPMCDIWFIR-------------------------FAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHS 350 (385)
T ss_pred eeeeEeccCccceEEEE-------------------------EeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEec
Confidence 11122222222222 266788999999999999999999876552 12211
Q ss_pred -cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 470 -HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 470 -h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
-...|...+||.||..|+...+|++|.-|+
T Consensus 351 ~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 351 KSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred cccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 235688999999999999999999999886
No 143
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1e-21 Score=175.02 Aligned_cols=286 Identities=21% Similarity=0.352 Sum_probs=197.3
Q ss_pred EEEEcCCCCeEEEEeC---CCcEEEEeCCCCce-eEEecCC----CCCEEEEEEcC-------CCCEEEEEeCCCeEEEE
Q 010816 113 SVAFSPDGRQLASGSG---DTTVRLWDLNTQTP-MFKCTGH----KNWVLCIAWSA-------DGKHLVSGSKAGELQCW 177 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~---d~~i~iwd~~~~~~-~~~~~~h----~~~v~~v~~s~-------~~~~l~s~~~d~~i~~w 177 (500)
.+.+-|+.++++.|-. ...+.+|=.+...+ ++. .| ...-.|+.|.. .|+++|.|..|..|.||
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~nlYv--HHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIW 207 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEEENLYV--HHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIW 207 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCCcceeE--ecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEe
Confidence 3456677777776642 23455554433321 211 12 12346777743 36799999999999999
Q ss_pred eCCCCCc--------------------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816 178 DPQTGKP--------------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237 (500)
Q Consensus 178 d~~~~~~--------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 237 (500)
|+.--.. ....-.+|+..|..+.|+... ...+++||.|.+|++||+.+++|...+.
T Consensus 208 DLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~----~nVLaSgsaD~TV~lWD~~~g~p~~s~~ 283 (463)
T KOG0270|consen 208 DLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF----RNVLASGSADKTVKLWDVDTGKPKSSIT 283 (463)
T ss_pred ccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcccc----ceeEEecCCCceEEEEEcCCCCcceehh
Confidence 9742110 111234688888888887532 2479999999999999999999999999
Q ss_pred CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 238 GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
.|...|.++.|.+.. .|++|+.|+++++.|++........-.-...|..+++.+.
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~----------------------- 340 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPH----------------------- 340 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCC-----------------------
Confidence 999999999998753 7999999999999999853221111112234555655542
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCce
Q 010816 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
....++++..||+++-+|.+....+...+..|.+.|.++++++. ..++++++.|+.|++|++..-..
T Consensus 341 ------------se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~ 408 (463)
T KOG0270|consen 341 ------------SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP 408 (463)
T ss_pred ------------CceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC
Confidence 24578899999999999999988888999999999999999985 57899999999999999764322
Q ss_pred EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcccc
Q 010816 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLK 464 (500)
Q Consensus 395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~ 464 (500)
.. ...|.-.+ ....|+ ++.|+- -++|.|+..+.++|||+.+....
T Consensus 409 ~~-v~~~~~~~-----~rl~c~-------------------~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 409 KS-VKEHSFKL-----GRLHCF-------------------ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cc-cccccccc-----cceeec-------------------ccCCCcceEEEecCccceEEEeecccChhH
Confidence 11 11121111 111111 234443 36778888889999999876543
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=3.8e-22 Score=185.23 Aligned_cols=359 Identities=21% Similarity=0.324 Sum_probs=221.9
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE--ecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK--CTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP 179 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~--~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~ 179 (500)
....|...|..+.|.|-...|+++++|.++++||+++.+.... +.||++.|.+++|.|+. ..+++|+.||.|.|||.
T Consensus 95 ~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3457999999999999667899999999999999998877654 78999999999999965 57889999999999997
Q ss_pred CCCCc--------------cc--c----------cccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeE
Q 010816 180 QTGKP--------------SG--N----------PLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKC 232 (500)
Q Consensus 180 ~~~~~--------------~~--~----------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~ 232 (500)
+-... .. . ....+...+.+- ....+..+...++++|. |+.|++||++...+
T Consensus 175 R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ss--vTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 175 RCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSS--VTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred eccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeee--eEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 52210 00 0 011122222220 00112235567888887 99999999998765
Q ss_pred EEEe--------cCc---cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeec
Q 010816 233 VICL--------SGH---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTG 298 (500)
Q Consensus 233 ~~~~--------~~h---~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~ 298 (500)
.... .-| ...+.++.....| +|++.+.|++|..||+..-.. +..+.++. +..+...
T Consensus 253 ~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~--~~sf~vk-------- 322 (720)
T KOG0321|consen 253 AYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKL--NSSFYVK-------- 322 (720)
T ss_pred ccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcc--cceeeee--------
Confidence 4322 112 2345566655433 566666799999999875321 11121111 1111000
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEE
Q 010816 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVAS 377 (500)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~las 377 (500)
.........+++|+.|...++|.+.....+...+.||.-.|++++|.|. -.-+|+
T Consensus 323 ------------------------s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 323 ------------------------SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred ------------------------eecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 0011224579999999999999998888888889999999999999984 345777
Q ss_pred EeCCCcEEEEeCCCCc--------------eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 378 ASFDKSIKLWNGTTGK--------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 378 gs~Dg~i~lwd~~~~~--------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
++.|..+++|++..+- ....+++|.-.+..+....-....-+. ............++-.|++.-
T Consensus 379 cSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP~s~a~~~s~~s 456 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSPVSLACSPSGAS 456 (720)
T ss_pred eccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCccchhcCcCCcc
Confidence 7999999999986542 122445554444433322111111110 000000011111122344333
Q ss_pred EEEE----ECCCcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeC-----------CCcEEEec
Q 010816 444 LLSG----SKDSTLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGK-----------DRVLKLWM 499 (500)
Q Consensus 444 l~s~----s~d~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~-----------D~~v~iW~ 499 (500)
++.+ +..-.|...+.+..+.... -.+|...|....|++.+..+++.+. +..++.|.
T Consensus 457 ~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s~~ 529 (720)
T KOG0321|consen 457 DDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNSPN 529 (720)
T ss_pred cccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccccc
Confidence 3322 1222355555544333322 2347778888889888878888888 77777764
No 145
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.90 E-value=1.6e-19 Score=177.23 Aligned_cols=326 Identities=38% Similarity=0.669 Sum_probs=245.6
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-eeEEecCCC-CCEEEEEE-cCCCC-EEEEEeC-CCeEEEE
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHK-NWVLCIAW-SADGK-HLVSGSK-AGELQCW 177 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-~~~~~~~h~-~~v~~v~~-s~~~~-~l~s~~~-d~~i~~w 177 (500)
.+.+|...|.++.|.+.+..++.++.|+.+.+|+..... ....+.++. ..+..+.+ ++++. .++..+. |+.+.+|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 456799999999999999999999999999999998876 566666644 37777777 88887 5555455 9999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY 255 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~ 255 (500)
+..........+..|...+..+.|.|.. ..+++++. |+.+++|++.....+..+.+|...|.++.|.+++. ++
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDG-----KLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCC-----CEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 9986222334567888899999887743 36777775 99999999999888888999999999999998874 44
Q ss_pred -EEeCCCeEEEEeCCCCeeEE-EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 256 -TGSQDCTIKVWETTQGKLIR-ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 256 -t~~~dg~i~lwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.|+.|++||...+..+. .+..|.... ...+++. ...++
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~------------------------------------~~~~~ 257 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPD------------------------------------GSLLA 257 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCC------------------------------------CCEEE
Confidence 44899999999988777776 466655543 2233332 23677
Q ss_pred EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe--CCcccEEEEEee
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVGPVYQIRFE 411 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~h~~~v~~~~~~ 411 (500)
+++.|+.+++|+............+|...+.++.|+|++..+++++.|+.+++||..+........ .|...+..+
T Consensus 258 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 334 (466)
T COG2319 258 SGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL--- 334 (466)
T ss_pred EecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEE---
Confidence 899999999999875554233336788999999999999888889999999999998887766655 666655554
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE-E
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS-G 489 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-~ 489 (500)
.+.+++..++.+ ..|+.+++|++............ ..+..+.+++ ...+.. +
T Consensus 335 ------------------------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 335 ------------------------SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred ------------------------EECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-CCCEEEEe
Confidence 332333455555 68899999999887632222222 2288999998 544454 7
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
+.++.+.+|+
T Consensus 389 ~~~~~~~~~~ 398 (466)
T COG2319 389 STDGTVRLWD 398 (466)
T ss_pred cCCCceEEEe
Confidence 8999999996
No 146
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.2e-20 Score=176.40 Aligned_cols=270 Identities=14% Similarity=0.150 Sum_probs=182.9
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCce-EEEEeCCCcEEEEECCCCeEEEEecCccc
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSLRKCVICLSGHTL 241 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~~~~~~~~~~h~~ 241 (500)
+.+++++.|+.+.+||+.+++.... +..+. .+.++.|.| +++. +++++.++.|++||..+++.+..+..+..
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~-~~~~~-~~~~l~~~~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 74 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRT-FPVGQ-RPRGITLSK-----DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD 74 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEE-EECCC-CCCceEECC-----CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC
Confidence 5788999999999999988875442 33333 345677765 3344 46778899999999998887766655433
Q ss_pred cEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 242 AVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 242 ~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
+..+.|++++. ++ +++.|+.+++||+.+++.+..+... ..+..++++++
T Consensus 75 -~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~~d--------------------------- 125 (300)
T TIGR03866 75 -PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAVSPD--------------------------- 125 (300)
T ss_pred -ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEECCC---------------------------
Confidence 45678888764 44 4556899999999988776665422 22445555554
Q ss_pred hhhhhcCCCCcEEEEeeCCC-eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEE
Q 010816 320 RYNKIKGNAPERLVSGSDDF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~-~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~ 397 (500)
+..+++++.++ .+.+||......... . .......+++|+|+|++|+.+ ..|+.|++||+.+++.+..
T Consensus 126 ---------g~~l~~~~~~~~~~~~~d~~~~~~~~~-~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~ 194 (300)
T TIGR03866 126 ---------GKIVVNTSETTNMAHFIDTKTYEIVDN-V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKK 194 (300)
T ss_pred ---------CCEEEEEecCCCeEEEEeCCCCeEEEE-E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeee
Confidence 34566666654 466778654322111 1 122345789999999988544 5699999999999887665
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECCCccccccccCcccCEEE
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIRTQKLKQDLPGHADEVFA 476 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~~~~~h~~~V~~ 476 (500)
+..+...+..- ......++|+|++++++.+ +.++.+.+||+++++....+. +...+.+
T Consensus 195 ~~~~~~~~~~~--------------------~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~ 253 (300)
T TIGR03866 195 ITFEIPGVHPE--------------------AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQ 253 (300)
T ss_pred eeecccccccc--------------------cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcce
Confidence 54321110000 0001123679999986554 556789999999888765543 3457899
Q ss_pred EEEcCCCCEEEEE-eCCCcEEEecC
Q 010816 477 VDWSPDGEKVASG-GKDRVLKLWMG 500 (500)
Q Consensus 477 l~~s~dg~~l~s~-~~D~~v~iW~~ 500 (500)
++|+|+|++|+++ +.++.|++|+.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEEC
Confidence 9999999999886 56899999973
No 147
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=3.3e-22 Score=178.12 Aligned_cols=233 Identities=24% Similarity=0.404 Sum_probs=178.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCC---ceeE------------------EecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEE
Q 010816 120 GRQLASGSGDTTVRLWDLNTQ---TPMF------------------KCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCW 177 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~---~~~~------------------~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~w 177 (500)
|+++|.|..|..|.|||+.-. .|.. ..++|+..|.+++|+.+ ...|||||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 679999999999999997421 1111 13479999999999875 4689999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--CeEE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIY 255 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~ 255 (500)
|+.+|++.. .+..|.+.|.++.|+|.. ...+++|+.|++|++.|.+...+....=.-.+.|-.++|.+. ..++
T Consensus 272 D~~~g~p~~-s~~~~~k~Vq~l~wh~~~----p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 272 DVDTGKPKS-SITHHGKKVQTLEWHPYE----PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFF 346 (463)
T ss_pred EcCCCCcce-ehhhcCCceeEEEecCCC----ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEE
Confidence 999998764 466799999999999854 358999999999999999842221111112456888889764 3688
Q ss_pred EEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 256 TGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++..||+++-+|.|.. +.+.+++.|...|.+++++.. .+..+++
T Consensus 347 ~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~-----------------------------------~p~~l~t 391 (463)
T KOG0270|consen 347 VSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQ-----------------------------------TPGLLST 391 (463)
T ss_pred EecCCceEEeeecCCCCCceeEEEeccCCcceEEecCC-----------------------------------CCcceee
Confidence 8999999999999875 889999999999999987653 2457899
Q ss_pred eeCCCeEEEEcCCCCCCCceeeeccc---CcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQ---QLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~---~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
++.|++|++|+....... ....|. ....|.++.|+- .++|.|+..+.++|||+.+...
T Consensus 392 ~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999999997543321 111221 235677778864 5788899999999999987654
No 148
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.7e-21 Score=162.67 Aligned_cols=255 Identities=19% Similarity=0.287 Sum_probs=167.3
Q ss_pred CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCc--------------ccccccCcccceEEEEeeeeecCCCCce
Q 010816 148 GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP--------------SGNPLSGHKKWITGISWEPVHLNAPCRR 212 (500)
Q Consensus 148 ~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 212 (500)
.|.+.|.++...+ .|+++++|+.||.|.+||++.... ....-.+|+..|..+.|-|.+ .+.
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D----tGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID----TGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec----Cce
Confidence 5889999999987 589999999999999999875431 112346788999999999964 458
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816 213 FVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (500)
Q Consensus 213 ~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~ 288 (500)
|.++|.|.++++||.++-+....|.- ...|.+-+++|- -.+++|..|-.|++.|+..|...+.+.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls---------- 185 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS---------- 185 (397)
T ss_pred eecccccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec----------
Confidence 99999999999999999877666542 234555556542 257888899999999998876655544
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~ 368 (500)
||.+.|.+|.|
T Consensus 186 ---------------------------------------------------------------------GHr~~vlaV~W 196 (397)
T KOG4283|consen 186 ---------------------------------------------------------------------GHRDGVLAVEW 196 (397)
T ss_pred ---------------------------------------------------------------------cccCceEEEEe
Confidence 44555555666
Q ss_pred CCCCC-EEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 369 SPDGQ-WVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 369 sp~g~-~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
+|... .||+|+.||.||+||++.. .+..++..|.+.-. .....-......+..++|+.++.++++
T Consensus 197 sp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~-------------p~~~~n~ah~gkvngla~tSd~~~l~~ 263 (397)
T KOG4283|consen 197 SPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP-------------PILKTNTAHYGKVNGLAWTSDARYLAS 263 (397)
T ss_pred ccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC-------------ccccccccccceeeeeeecccchhhhh
Confidence 66433 3456666666666666543 44445554443100 000000011122333478999999999
Q ss_pred EECCCcEEEEECCCccccccc-----------------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 447 GSKDSTLKVWDIRTQKLKQDL-----------------PGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~-----------------~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.+.|..+++|+...|+....- .+|.+.+..+-.. ++-.|.+...-..|+.|.+
T Consensus 264 ~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~-~~lall~~~sgs~ir~l~~ 333 (397)
T KOG4283|consen 264 CGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPND-GSLALLNLLEGSFVRRLST 333 (397)
T ss_pred ccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecC-CeEEEEEccCceEEEeeec
Confidence 999999999999876532110 1222222222111 3445667777788888863
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=5e-21 Score=171.19 Aligned_cols=288 Identities=19% Similarity=0.283 Sum_probs=205.3
Q ss_pred ccCCcccEEEEEEcCCC--CeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 010816 104 IAGHTEAVLSVAFSPDG--RQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQC 176 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~--~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~ 176 (500)
+.-|.+.|++++|+|.. +++|+|+.-|.|-+||+.++. .+..+..|.++|.++.|+|. -..+++.|+||+|++
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~ 261 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL 261 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence 34578999999999975 478899999999999995432 34567789999999999995 468999999999999
Q ss_pred EeCCCCCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeCCC--C
Q 010816 177 WDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGD--G 252 (500)
Q Consensus 177 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~--~ 252 (500)
-|++.+..... .+.....++.++ .++.....++.+..=|...+||++++.. ...+.-|...|+.++++|- .
T Consensus 262 ~D~~~~i~e~v~s~~~d~~~fs~~-----d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~ 336 (498)
T KOG4328|consen 262 QDFEGNISEEVLSLDTDNIWFSSL-----DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW 336 (498)
T ss_pred eeecchhhHHHhhcCccceeeeec-----cccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence 99987632110 111122233333 3344445667777777999999998754 5556678889999999874 4
Q ss_pred eEEEEeCCCeEEEEeCCCCeeE----EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 253 VIYTGSQDCTIKVWETTQGKLI----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
.++|++.|++.+|||++.-... -....|...|.+..++|..
T Consensus 337 ~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~----------------------------------- 381 (498)
T KOG4328|consen 337 FLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG----------------------------------- 381 (498)
T ss_pred heeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----------------------------------
Confidence 7999999999999998753221 2234588889888888752
Q ss_pred CcEEEEeeCCCeEEEEcCC---CCCCCceeeeccc----CcE--EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 329 PERLVSGSDDFTMFLWEPA---VSKQPKTRMTGHQ----QLV--NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~---~~~~~~~~~~~h~----~~v--~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
..+++.+.|..|++||.. ....+... -.|. .++ -...|.|+..++++|-.-..|-++|...++.+..+-
T Consensus 382 -gtl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~ 459 (498)
T KOG4328|consen 382 -GTLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELH 459 (498)
T ss_pred -CceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeecc
Confidence 348999999999999973 11112211 1222 222 245799999999999999999999999888766543
Q ss_pred CCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC
Q 010816 400 GHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR 459 (500)
Q Consensus 400 ~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~ 459 (500)
+-.. .|. ++..|+|-+..+++| +.-|.|+||--+
T Consensus 460 ~P~~~tI~--------------------------~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIP--------------------------SVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred Cccccccc--------------------------cceeecccccceeccCCccceEEEEecC
Confidence 3221 121 223688988855554 567888888543
No 150
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=170.27 Aligned_cols=243 Identities=22% Similarity=0.382 Sum_probs=184.1
Q ss_pred cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----------------CeEEEEecCccccEEEEEeCC--C
Q 010816 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------------RKCVICLSGHTLAVTCVKWGG--D 251 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----------------~~~~~~~~~h~~~v~~~~~~~--~ 251 (500)
..|.+.++.+.-.+.. .....++=+..|.|+|||+.. .+.++++.+|...=..+.|+| .
T Consensus 148 i~h~g~~NRvr~~~~~---~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLG---NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccC---CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 3455666665544432 223456668889999999742 346778889998888999998 5
Q ss_pred CeEEEEeCCCeEEEEeCCCCeeE---EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 252 GVIYTGSQDCTIKVWETTQGKLI---RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 252 ~~l~t~~~dg~i~lwd~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
|.+++|..-+.|++|...+|... +.+.+|...|..+.++|. .
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSpt-----------------------------------E 269 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPT-----------------------------------E 269 (440)
T ss_pred cccccCccccceEeeeeccCceeecCccccccccchhhhccCCc-----------------------------------c
Confidence 67899999999999998887653 345668888888887764 2
Q ss_pred CcEEEEeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC---CceEEEEeCCccc
Q 010816 329 PERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT---GKFVAVFRGHVGP 404 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~---~~~~~~~~~h~~~ 404 (500)
...|++||.|++|+|||.+... ........|...|+.++|+.+..+||+|+.||+++|||++. ++.+..|+-|+.+
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred CceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 3579999999999999998763 33444588999999999999988999999999999999875 6678999999999
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEECCCccc-----------cccc-----
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKL-----------KQDL----- 467 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~-----------~~~~----- 467 (500)
|+++. |+|. ...|++++.|..|.|||+....- +..+
T Consensus 350 Itsie---------------------------W~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLL 402 (440)
T KOG0302|consen 350 ITSIE---------------------------WHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLL 402 (440)
T ss_pred eeEEE---------------------------eccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeE
Confidence 99984 5664 46788899999999999864211 1111
Q ss_pred cCcc--cCEEEEEEcCCC-CEEEEEeCCCcEEEe
Q 010816 468 PGHA--DEVFAVDWSPDG-EKVASGGKDRVLKLW 498 (500)
Q Consensus 468 ~~h~--~~V~~l~~s~dg-~~l~s~~~D~~v~iW 498 (500)
--|. ..|..|.|+++- -.|++.+.|| +.||
T Consensus 403 FVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 403 FVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1243 367889999873 4778888888 4444
No 151
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.2e-20 Score=159.24 Aligned_cols=237 Identities=22% Similarity=0.267 Sum_probs=171.0
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
--|..++++++|.+ ...+++|+.||.|+.+|+.+++.. .+..|..+|.|+.+++-...+++||.|++|++||.+....
T Consensus 51 ~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 51 FKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred eecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence 35899999999988 456899999999999999988764 3557999999999999888999999999999999986433
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCe-EEEEeCCC
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC 261 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~t~~~dg 261 (500)
... +. ....|.++.. .+.+++.|..|..+.+||+++-....+.+ .-...++|+++-|++. ++.++-||
T Consensus 129 ~~~-~d-~~kkVy~~~v-------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieG 199 (323)
T KOG1036|consen 129 VGT-FD-QGKKVYCMDV-------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEG 199 (323)
T ss_pred ccc-cc-cCceEEEEec-------cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecc
Confidence 322 11 2235666553 34689999999999999998765443222 3356788998887543 66788899
Q ss_pred eEEEEeCCCCeeEE----EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 262 TIKVWETTQGKLIR----ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 262 ~i~lwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
.|.+=.+......+ .++-|.. ..
T Consensus 200 RVavE~~d~s~~~~skkyaFkCHr~-----------------------------------------------------~~ 226 (323)
T KOG1036|consen 200 RVAVEYFDDSEEAQSKKYAFKCHRL-----------------------------------------------------SE 226 (323)
T ss_pred eEEEEccCCchHHhhhceeEEeeec-----------------------------------------------------cc
Confidence 88774443321110 0110000 00
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
+++- .--+|++++|+|--+.||||+.||.|.+||+...+-+..+..-...|..+
T Consensus 227 ~~~~-----------------~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~sl--------- 280 (323)
T KOG1036|consen 227 KDTE-----------------IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSL--------- 280 (323)
T ss_pred CCce-----------------EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEE---------
Confidence 1110 01358999999999999999999999999999887766665444444444
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
+|+.+|..||.|+.
T Consensus 281 ------------------sfs~dG~~LAia~s 294 (323)
T KOG1036|consen 281 ------------------SFSMDGSLLAIASS 294 (323)
T ss_pred ------------------EeccCCCeEEEEec
Confidence 77999999999874
No 152
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.7e-22 Score=196.74 Aligned_cols=248 Identities=21% Similarity=0.380 Sum_probs=191.0
Q ss_pred ccEEEEEEcCCCCe----EEEEeCCCcEEEEeCCCC------ceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 010816 109 EAVLSVAFSPDGRQ----LASGSGDTTVRLWDLNTQ------TPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCW 177 (500)
Q Consensus 109 ~~V~~~~~sp~~~~----lat~~~d~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~w 177 (500)
..-..++|.+.|.. ||.|..||.|.+||...- ..+.++..|++.|..+.|++.+. +||+|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34567899888775 888899999999997541 23456778999999999999755 99999999999999
Q ss_pred eCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--cEEEEEeCCCC--
Q 010816 178 DPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG-- 252 (500)
Q Consensus 178 d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~-- 252 (500)
|+.+-+..... -......|.+++|+.. ....|++++.+|.+.|||++..+.+..+..|.. .++.+.|+|++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrk----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT 220 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRK----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT 220 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchh----hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence 99875433222 1224567899999763 335799999999999999999887777665543 35667787765
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
.+++++.|..
T Consensus 221 ql~~As~dd~---------------------------------------------------------------------- 230 (1049)
T KOG0307|consen 221 QLLVASGDDS---------------------------------------------------------------------- 230 (1049)
T ss_pred eeeeecCCCC----------------------------------------------------------------------
Confidence 3444444321
Q ss_pred EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~ 411 (500)
.-.|.+||++....+...+.+|+..|.++.|++.+ .+|++++.|+.|.+|+.++|+.+..+.....++..+
T Consensus 231 -----~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv--- 302 (1049)
T KOG0307|consen 231 -----APVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDV--- 302 (1049)
T ss_pred -----CceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeee---
Confidence 11355666666666667778999999999999965 899999999999999999999999888777777666
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcc
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~ 462 (500)
.|+|.. .++++++.||.|-||.+....
T Consensus 303 ------------------------~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 303 ------------------------QWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ------------------------eecCCCcchhhhheeccceeeeeeecCC
Confidence 356654 488999999999999987643
No 153
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=7.8e-21 Score=162.42 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=149.0
Q ss_pred EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816 145 KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (500)
Q Consensus 145 ~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i 224 (500)
.+++|.+.|++++|+.||++|++++.|++|++|+++.-. ...|.. +. +
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~----~R-----------------------~ 128 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRC----IR-----------------------Q 128 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhH----hh-----------------------c
Confidence 578999999999999999999999999999999987521 223321 00 0
Q ss_pred EECCCCeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 225 WDVSLRKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 225 wd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
+++ .+| -+.+.|.||- .+++.-...++++|.+...+.
T Consensus 129 -nve--------~dh---pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d----------------------------- 167 (420)
T KOG2096|consen 129 -NVE--------YDH---PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD----------------------------- 167 (420)
T ss_pred -ccc--------CCC---ceEEEECCCcceEEEEEccCCEEEEEEeeeccc-----------------------------
Confidence 000 122 2445677764 455666777888886532110
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
|+....-.-||- ......|+-.+..+-...++.+|++++.|.
T Consensus 168 --------------------------------G~~~~~~v~~D~------~~f~~kh~v~~i~iGiA~~~k~imsas~dt 209 (420)
T KOG2096|consen 168 --------------------------------GSGSHHFVHIDN------LEFERKHQVDIINIGIAGNAKYIMSASLDT 209 (420)
T ss_pred --------------------------------CCCCcccccccc------cccchhcccceEEEeecCCceEEEEecCCC
Confidence 000001111221 011124555666677777899999999999
Q ss_pred cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC---
Q 010816 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR--- 459 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~--- 459 (500)
.|.+|+++ |+.+.........- ...+.||+|+++|+++..-.|++|..-
T Consensus 210 ~i~lw~lk-Gq~L~~idtnq~~n---------------------------~~aavSP~GRFia~~gFTpDVkVwE~~f~k 261 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQSIDTNQSSN---------------------------YDAAVSPDGRFIAVSGFTPDVKVWEPIFTK 261 (420)
T ss_pred cEEEEecC-Cceeeeeccccccc---------------------------cceeeCCCCcEEEEecCCCCceEEEEEecc
Confidence 99999998 87766543221111 111569999999999999999999863
Q ss_pred Ccc-----ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 460 TQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 460 ~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+ ....+.||...|.+++|||+..+++|+|.||+.|||+
T Consensus 262 dG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 262 DGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred CcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 222 2456899999999999999999999999999999997
No 154
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.88 E-value=1.7e-21 Score=162.24 Aligned_cols=287 Identities=21% Similarity=0.289 Sum_probs=196.2
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.|.+|.+.|+++.|..+++ |.+|..-|.|++|++.+.+.+..+. .|...|+.+.--|+ +.|.+-+.|..+.+|++.-
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4558999999999988877 8899999999999999988877776 56788999988887 5788999999999999876
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCc----eEEEEeCC-CcEEEEECCCCeEEEEe----cCccccEEEEEeCCC-
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCR----RFVSASKD-GDARIWDVSLRKCVICL----SGHTLAVTCVKWGGD- 251 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----~~~s~s~d-g~v~iwd~~~~~~~~~~----~~h~~~v~~~~~~~~- 251 (500)
+.. ...|.-.++++.|.+........ .++.-+.. -.+.+-|......+... .+..+.+.|..+.-+
T Consensus 87 s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c 162 (323)
T KOG0322|consen 87 SAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHAC 162 (323)
T ss_pred cce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccc
Confidence 542 34456666777776654322111 11110000 00111121111111111 122345666654321
Q ss_pred ---CeEEEEeCCCeEEEEeCCCCeeE----------EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 252 ---GVIYTGSQDCTIKVWETTQGKLI----------RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 252 ---~~l~t~~~dg~i~lwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
-.+++|-++|.+.+||+.++..+ .....|.++|.++.+.+.
T Consensus 163 ~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-------------------------- 216 (323)
T KOG0322|consen 163 GSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-------------------------- 216 (323)
T ss_pred cceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh--------------------------
Confidence 14677889999999999987332 233456667777665432
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
.++-++|+.+..+..|.+...... .....-....|..+.+-||++.+||+++|++||+|+.++++.+
T Consensus 217 ----------~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL 286 (323)
T KOG0322|consen 217 ----------CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL 286 (323)
T ss_pred ----------hcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch
Confidence 122345566666666765433111 1111112234788999999999999999999999999999999
Q ss_pred EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 396 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
.+++-|.+.+.++ +|+|+..++|+||.|++|-+|++
T Consensus 287 AVLkyHsagvn~v---------------------------Afspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAV---------------------------AFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEE---------------------------EeCCCCchhhhccCCceEEeeec
Confidence 9999999999888 66999999999999999999986
No 155
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=5.4e-20 Score=157.65 Aligned_cols=279 Identities=22% Similarity=0.325 Sum_probs=199.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCC----C-cccccccC-------cccceEEEEeeeeec--CCCCceEEEEeC
Q 010816 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTG----K-PSGNPLSG-------HKKWITGISWEPVHL--NAPCRRFVSASK 218 (500)
Q Consensus 153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~----~-~~~~~~~~-------~~~~v~~~~~~~~~~--~~~~~~~~s~s~ 218 (500)
...+.|+|||..|++-+.|..+++|++-.. + .......- ....|..-+|.+.-. .++...+++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 345789999999999999999999986421 0 00001111 123456666765321 233457899999
Q ss_pred CCcEEEEECCCCeEEEEecC--cccc---EEEEEeCCCCeEEEEeCCCeEEEEeC-CCCeeEEEe--e-----cCCceEE
Q 010816 219 DGDARIWDVSLRKCVICLSG--HTLA---VTCVKWGGDGVIYTGSQDCTIKVWET-TQGKLIREL--K-----GHGHWVN 285 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~--h~~~---v~~~~~~~~~~l~t~~~dg~i~lwd~-~~~~~~~~~--~-----~~~~~v~ 285 (500)
+.-|++||.-+++....+++ |... -.|+.|++||.-+.++..++|++||+ +.|+....+ . +...-+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 99999999999887655543 4433 35789999998777888999999998 666543222 1 1233455
Q ss_pred EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816 286 SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (500)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~ 365 (500)
+++++|.. ...++.|+...++-|+.-. ...+...+.+|...|+.
T Consensus 212 c~a~sP~~-----------------------------------~~~~a~gsY~q~~giy~~~-~~~pl~llggh~gGvTh 255 (406)
T KOG2919|consen 212 CFAFSPMD-----------------------------------SKTLAVGSYGQRVGIYNDD-GRRPLQLLGGHGGGVTH 255 (406)
T ss_pred eeeccCCC-----------------------------------CcceeeecccceeeeEecC-CCCceeeecccCCCeee
Confidence 66666532 3357778877776666532 34567788899999999
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEeCCC-CceEEEEeCCccc-EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816 366 VYFSPDGQWVASASF-DKSIKLWNGTT-GKFVAVFRGHVGP-VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (500)
Q Consensus 366 l~~sp~g~~lasgs~-Dg~i~lwd~~~-~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 442 (500)
+.|.++|+.|.+|+. |-.|-.||++. +..+..+..|.+. --.|.| ...|+++
T Consensus 256 L~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~F-------------------------Dld~~~~ 310 (406)
T KOG2919|consen 256 LQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILF-------------------------DLDPKGE 310 (406)
T ss_pred EEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEE-------------------------ecCCCCc
Confidence 999999999999976 77899999975 3444455555442 122333 2368999
Q ss_pred EEEEEECCCcEEEEECCC-ccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 443 LLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+|++|+.||.|++||++. +.....+..|.+.|+.|+++|-=..+|+++.-
T Consensus 311 ~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred eeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 999999999999999988 66677777889999999999987777777653
No 156
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.87 E-value=4.8e-18 Score=166.77 Aligned_cols=327 Identities=38% Similarity=0.654 Sum_probs=240.6
Q ss_pred ccccCCc-ccEEEEEE-cCCCC-eEEEEeC-CCcEEEEeCCC-CceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 010816 102 ATIAGHT-EAVLSVAF-SPDGR-QLASGSG-DTTVRLWDLNT-QTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQ 175 (500)
Q Consensus 102 ~~~~gh~-~~V~~~~~-sp~~~-~lat~~~-d~~i~iwd~~~-~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~ 175 (500)
..+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ......+..|...|.++.|+|++..+++++. |+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred EEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 3444433 37777777 88887 5555444 99999999988 6777778899999999999999998988885 99999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCC-e
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDG-V 253 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~-~ 253 (500)
+|+...+.... .+.+|...+.++.|.|... ..+++++.|+.+++||...+.... .+.+|.... ...|++++ .
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~----~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 255 (466)
T COG2319 182 LWDLRTGKPLS-TLAGHTDPVSSLAFSPDGG----LLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSL 255 (466)
T ss_pred EEEcCCCceEE-eeccCCCceEEEEEcCCcc----eEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCE
Confidence 99998754433 4566899999999985321 245555999999999999888877 688888775 44788886 7
Q ss_pred EEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 254 IYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
+++++.|+.+++|+...... +..+..|...+.++.+.|+ ...+
T Consensus 256 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------------------------------------~~~~ 299 (466)
T COG2319 256 LASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD------------------------------------GKLL 299 (466)
T ss_pred EEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCC------------------------------------CCEE
Confidence 78899999999999986654 4444566777777766652 2356
Q ss_pred EEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 333 VSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
++++.|+.+.+||........... ..|...+..+.|.+++..++.+ ..|+.+++|+............... +..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 376 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSV-- 376 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEE--
Confidence 668888889999765443322222 4677789999994343556555 6889999999987762222222111 2222
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 489 (500)
.+++ ...+.. +..++.+.+|+............+...+....+++++..++++
T Consensus 377 -------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (466)
T COG2319 377 -------------------------SFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430 (466)
T ss_pred -------------------------EECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence 3455 333333 7889999999999887766655543678999999999999999
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
+.++.+++|.
T Consensus 431 ~~~~~~~~~~ 440 (466)
T COG2319 431 SSDNTIRLWD 440 (466)
T ss_pred cCCCcEEEEe
Confidence 9999999996
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=5e-20 Score=157.29 Aligned_cols=290 Identities=19% Similarity=0.291 Sum_probs=193.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE
Q 010816 153 VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (500)
Q Consensus 153 v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 232 (500)
..|+.|++.|.+||+|+.||.|.+||..+.+ ....+.+|..+|++++|++ +++.++++|.|..|++||+..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~-----dgr~LltsS~D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSR-----DGRKLLTSSRDWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecC-----CCCEeeeecCCceeEEEeccCCCc
Confidence 6899999999999999999999999998876 4457899999999999987 568999999999999999999998
Q ss_pred EEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 233 VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
+..++ ..++|+.+.|.|.. ..++.-.+..-.+-++..++ +.+ +..+++..+...+ +
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~---------h~~--Lp~d~d~dln~sa-s--------- 157 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK---------HSV--LPKDDDGDLNSSA-S--------- 157 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc---------eee--ccCCCcccccccc-c---------
Confidence 77654 45788888888743 33333222222222322211 001 1111111000000 0
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
.......++++++|...|.+.++|....+. ...+.-. ...|..+-|+..|+.|+.-+.|+.||.|+.
T Consensus 158 -----------~~~fdr~g~yIitGtsKGkllv~~a~t~e~-vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 158 -----------HGVFDRRGKYIITGTSKGKLLVYDAETLEC-VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred -----------cccccCCCCEEEEecCcceEEEEecchhee-eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 001123467899999999999999654322 2222111 256888999999999999999999999997
Q ss_pred CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCcccccccc
Q 010816 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~ 468 (500)
+.--.. |..+.+. ..+. +..+++-... -...||.+|.++.+|+. -..++||....|.+++.+.
T Consensus 226 ~di~~~----~r~~e~e-----~~~K------~qDvVNk~~W-k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 226 SDIDDE----GRDGEVE-----PEHK------LQDVVNKLQW-KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred hhhccc----CccCCcC-----hhHH------HHHHHhhhhh-hheeecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 631100 0000000 0000 0000000000 01246889999888774 4579999999999999999
Q ss_pred Ccc-cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 469 GHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 469 ~h~-~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|.+ .....+.|+|-...+++- +.|++++|.
T Consensus 290 G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred CCchhheeecccccceeeeeec-cCCceEEEE
Confidence 887 467789999998888888 778999995
No 158
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=5.3e-20 Score=155.31 Aligned_cols=250 Identities=20% Similarity=0.330 Sum_probs=186.1
Q ss_pred cccccCCcccEEEEEEcCCCC-eEEEEeCC-------CcEEEEeCCCCc---------eeEEec-CCCCCEEEEEEcCCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGR-QLASGSGD-------TTVRLWDLNTQT---------PMFKCT-GHKNWVLCIAWSADG 162 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~-~lat~~~d-------~~i~iwd~~~~~---------~~~~~~-~h~~~v~~v~~s~~~ 162 (500)
...+..|.+.|+.++-+|-.+ .|+|+-.+ ..+.||.+.... ++..+. .+-+.|.|+.|.|++
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 345667889999999999665 45555331 247899985421 222332 455689999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 237 (500)
+.|++-. |..|.+|++..+..+.. ...++....++-.|+|.+ ++..++ ...|++++.||+++.++...+.
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHH---dgnqv~-tt~d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHH---DGNQVA-TTSDSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCC---ccceEE-EeCCCcEEEEEccchhhhcchh
Confidence 9999876 89999999987765221 123356677888999865 344454 4568999999999988776654
Q ss_pred -CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816 238 -GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (500)
Q Consensus 238 -~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (500)
+|...|..+.|+|+. .|++|+.||.||+||.+..+ .++++.+|.+||.++.+.|..
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~h-------------------- 270 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEH-------------------- 270 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCcc--------------------
Confidence 688889999999975 58999999999999998654 688999999999999988752
Q ss_pred HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC----------------------------CCceeeecccCcEEE
Q 010816 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK----------------------------QPKTRMTGHQQLVNH 365 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~----------------------------~~~~~~~~h~~~v~~ 365 (500)
.+.+++|+.|..|.+|....-. .....+..|.+.|.+
T Consensus 271 ---------------dqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~ 335 (370)
T KOG1007|consen 271 ---------------DQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYA 335 (370)
T ss_pred ---------------ceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEE
Confidence 3568888888888888532100 011245679999999
Q ss_pred EEECCCC-CEEEEEeCCCcEEEEeCC
Q 010816 366 VYFSPDG-QWVASASFDKSIKLWNGT 390 (500)
Q Consensus 366 l~~sp~g-~~lasgs~Dg~i~lwd~~ 390 (500)
++||.-. =.+|+-|+||++.|=.+.
T Consensus 336 ~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 336 LAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred EeeccCCCeeEEEeccCceEEeecCC
Confidence 9999854 567888999998876543
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=7.3e-21 Score=188.43 Aligned_cols=278 Identities=23% Similarity=0.464 Sum_probs=200.7
Q ss_pred EEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCCCCE----EEEEeCC
Q 010816 113 SVAFSPDGR-QLASG----------SGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSADGKH----LVSGSKA 171 (500)
Q Consensus 113 ~~~~sp~~~-~lat~----------~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~~~~----l~s~~~d 171 (500)
.++|+|++. ++|+| +.+.++.||.+.-.. +...+. -.....+++|.+.|.. ||.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence 367888776 55544 335567777654222 222221 2346789999987765 8888999
Q ss_pred CeEEEEeCCCC---C--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEE
Q 010816 172 GELQCWDPQTG---K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVT 244 (500)
Q Consensus 172 ~~i~~wd~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~ 244 (500)
|.|-+||...- . ........|++.|.++.|++... ..+++|+.||.|.|||+.+-+...... .....|.
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~----nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQG----NLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCC----ceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 99999998652 1 12234577999999999988543 489999999999999998765544442 1345688
Q ss_pred EEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 245 ~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
+++|+.. .+|++++.+|.+.|||++..+.+-.+..+
T Consensus 166 ~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~------------------------------------------ 203 (1049)
T KOG0307|consen 166 CLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT------------------------------------------ 203 (1049)
T ss_pred EeccchhhhHHhhccCCCCCceeccccCCCcccccccC------------------------------------------
Confidence 8888743 35777777888888887754322111100
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCC---cEEEEeCCC-CceEEE
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDK---SIKLWNGTT-GKFVAV 397 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg---~i~lwd~~~-~~~~~~ 397 (500)
+....+..++|+|+. ..|++++.|. .|.+||++- -..+++
T Consensus 204 -----------------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~ 248 (1049)
T KOG0307|consen 204 -----------------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKI 248 (1049)
T ss_pred -----------------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhh
Confidence 001236778999975 4566665543 699999875 345778
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEE
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA 476 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~ 476 (500)
+++|...|.++ +|++.+ ++|++++.|+.|.+|+.++++.+..++...+.++.
T Consensus 249 ~~~H~~Gilsl---------------------------sWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fd 301 (1049)
T KOG0307|consen 249 LEGHQRGILSL---------------------------SWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFD 301 (1049)
T ss_pred hcccccceeee---------------------------ccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceee
Confidence 89999888777 677766 89999999999999999999999999888889999
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEec
Q 010816 477 VDWSPDGE-KVASGGKDRVLKLWM 499 (500)
Q Consensus 477 l~~s~dg~-~l~s~~~D~~v~iW~ 499 (500)
+.|.|... .++.++-||.|-|+.
T Consensus 302 v~w~pr~P~~~A~asfdgkI~I~s 325 (1049)
T KOG0307|consen 302 VQWCPRNPSVMAAASFDGKISIYS 325 (1049)
T ss_pred eeecCCCcchhhhheeccceeeee
Confidence 99999876 778889999998863
No 160
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=3.1e-20 Score=167.87 Aligned_cols=193 Identities=19% Similarity=0.340 Sum_probs=145.4
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816 241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (500)
Q Consensus 241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (500)
..|+++...+|| .|++|+.-.++.|||+..... ..++........+++++++
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spD------------------------- 520 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPD------------------------- 520 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCc-------------------------
Confidence 345566666776 588999999999999875432 2222222223334444443
Q ss_pred HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~ 397 (500)
....+++..||.|.+||+... .....+.||++.+.|+.+++||..|-+|+.|++||.||+++++.+..
T Consensus 521 -----------akvcFsccsdGnI~vwDLhnq-~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 521 -----------AKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred -----------cceeeeeccCCcEEEEEcccc-eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh
Confidence 234678889999999998653 45677899999999999999999999999999999999999876532
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEE
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAV 477 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l 477 (500)
.. ...-|.+ +.++|++.+||.|-..+.|.|-.....+ ...+.-|.+-|.+|
T Consensus 589 hd-F~SQIfS---------------------------Lg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSl 639 (705)
T KOG0639|consen 589 HD-FSSQIFS---------------------------LGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSL 639 (705)
T ss_pred hh-hhhhhee---------------------------cccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEE
Confidence 21 1122222 2468999999999999999888775543 34556688899999
Q ss_pred EEcCCCCEEEEEeCCCcEEEec
Q 010816 478 DWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 478 ~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|.+-|+|+++.|.|+.+..|.
T Consensus 640 KFa~cGkwfvStGkDnlLnawr 661 (705)
T KOG0639|consen 640 KFAYCGKWFVSTGKDNLLNAWR 661 (705)
T ss_pred EecccCceeeecCchhhhhhcc
Confidence 9999999999999999998885
No 161
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=2.1e-19 Score=167.91 Aligned_cols=272 Identities=22% Similarity=0.413 Sum_probs=193.5
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 189 (500)
.|..++|-|||..|+.+.+| .+.|||...+..+..+++|.+.|.|++|+.||+.+|||+.|+.|.+|+..- .+...
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 78999999999988877544 699999999999999999999999999999999999999999999998643 23345
Q ss_pred cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeC
Q 010816 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWET 268 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~ 268 (500)
..|.+.|.++.|+|.. ..+++++-. ..-+|........+ ......|.+.+|..||. ++.|-.||+|.+=+.
T Consensus 90 YSH~D~IQCMsFNP~~-----h~LasCsLs-dFglWS~~qK~V~K--~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPIT-----HQLASCSLS-DFGLWSPEQKSVSK--HKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred eccCCeeeEeecCchH-----HHhhhcchh-hccccChhhhhHHh--hhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 6799999999999864 356666542 34566554322111 11235677888988885 566888888877532
Q ss_pred CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (500)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~ 348 (500)
+|+..-.
T Consensus 162 -~gEek~~------------------------------------------------------------------------ 168 (1081)
T KOG1538|consen 162 -NGEEKVK------------------------------------------------------------------------ 168 (1081)
T ss_pred -CCCcceE------------------------------------------------------------------------
Confidence 1111100
Q ss_pred CCCCceeeecccCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 349 SKQPKTRMTGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 349 ~~~~~~~~~~h~~~v~~l~~sp~g-----~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
..+..|...+|.+++|+|.. ..+++..+..++..|.+. |+.+.. -..+.|+
T Consensus 169 ----I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk-------~r~L~Fd------------ 224 (1081)
T KOG1538|consen 169 ----IERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGK-------DRALNFD------------ 224 (1081)
T ss_pred ----EeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecc-------cccCCCC------------
Confidence 01112334567788888742 367777777777777663 333221 1111121
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+++.++|.+++.|+.|+.+++|- +.|-.+.++......||.|...|+++..+.|..||+|-.++
T Consensus 225 --------P~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 225 --------PCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred --------chhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence 11235679999999999999999995 44555566655667899999999999999999999997653
No 162
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.6e-18 Score=141.74 Aligned_cols=278 Identities=17% Similarity=0.293 Sum_probs=185.4
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
..|.+-+++|.+++|+.|..+|.|.+..+.+ +.++...++|.++|+.+.|. ..+|++|+ ||.|+-|.
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 3567778999999999999999999998752 34456678999999999997 35777876 59999998
Q ss_pred CCCCCc-------ccccccCcc-----cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816 179 PQTGKP-------SGNPLSGHK-----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (500)
Q Consensus 179 ~~~~~~-------~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 246 (500)
.+.... ......-|. -.|+++...|.. +.++.++.|+.++-||+++++...+++||+..|.++
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-----nSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~v 162 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-----NSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSV 162 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-----CcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeee
Confidence 753321 001111222 234555554432 346677799999999999999999999999999999
Q ss_pred Ee-CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816 247 KW-GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (500)
Q Consensus 247 ~~-~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (500)
.- +.++.+++|+.||++|+||+++++.++.+....++
T Consensus 163 v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~------------------------------------------ 200 (325)
T KOG0649|consen 163 VGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP------------------------------------------ 200 (325)
T ss_pred eecccCcceeecCCCccEEEEeccccceeEEeccccCh------------------------------------------
Confidence 87 56789999999999999999999887765421110
Q ss_pred CCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
..+. ....+|.+++.+ ..++++|+ ...+.+|++++.++..++.- .++
T Consensus 201 ----------------------------~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpi-pa~ 248 (325)
T KOG0649|consen 201 ----------------------------NLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPI-PAR 248 (325)
T ss_pred ----------------------------hhcCcccCceeEEEecc--CceEEecC-CCceeEEeccCCCceEEEec-ccc
Confidence 0000 112456666543 55777664 34688888888777665531 112
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
+..+.| ..+.+++++..+.|.-|.+. +.+....++.....++.+|+..--
T Consensus 249 v~~v~F-----------------------------~~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 249 VHLVDF-----------------------------VDDCVLIGGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred eeEeee-----------------------------ecceEEEeccccceeeeeec-cEEEEeccCCccceeeecccCCce
Confidence 222221 34567777777778888654 333333344334456666654433
Q ss_pred -EEEEEeCCCcEEEe
Q 010816 485 -KVASGGKDRVLKLW 498 (500)
Q Consensus 485 -~l~s~~~D~~v~iW 498 (500)
.|-.+|-.+++.|.
T Consensus 299 k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 KFISIAGFSNKLHIL 313 (325)
T ss_pred EEEEecccceeeeee
Confidence 44445666666664
No 163
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.84 E-value=6.6e-21 Score=182.02 Aligned_cols=276 Identities=26% Similarity=0.428 Sum_probs=202.0
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...|.||..+|.|+.|...|.++++|+.|..++||..++..++..+.||.+.|+.++.+.+..+++++|.|..|++|.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC----ccccEEEEEeCCCCeEEE
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG----HTLAVTCVKWGGDGVIYT 256 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~l~t 256 (500)
.+..+. .+.+|++.|++++|+| +.+.+.||++++||.+....++.-.. ...-+.++.|..+
T Consensus 263 ~~~pvs-vLrghtgavtaiafsP---------~~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~----- 327 (1113)
T KOG0644|consen 263 DGAPVS-VLRGHTGAVTAIAFSP---------RASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN----- 327 (1113)
T ss_pred CCchHH-HHhccccceeeeccCc---------cccCCCCCceEeccccccccccCCCCCCcccccceeeeecccc-----
Confidence 987654 5789999999999998 34778999999999872211111000 0001111111111
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
...+++++
T Consensus 328 ------------------------------------------------------------------------~~~f~Tgs 335 (1113)
T KOG0644|consen 328 ------------------------------------------------------------------------GDRFLTGS 335 (1113)
T ss_pred ------------------------------------------------------------------------cccccccc
Confidence 12344555
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
.|+.-..|.... +..+...+.-+.++.+- .+.+++-.+-.+.+|++.+|.+...+.+|..+++-+.+
T Consensus 336 ~d~ea~n~e~~~-------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~----- 403 (1113)
T KOG0644|consen 336 RDGEARNHEFEQ-------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDV----- 403 (1113)
T ss_pred CCcccccchhhH-------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeee-----
Confidence 555444443211 11122222222222222 34556667788999999999999999999999888755
Q ss_pred ecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCccccccc-cCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
+| +.+...+++.||...|||+..+..++.. .+| .++..-.||+||..++....-|
T Consensus 404 ----------------------Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hg 460 (1113)
T KOG0644|consen 404 ----------------------HPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHG 460 (1113)
T ss_pred ----------------------cCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCC
Confidence 33 4456678999999999999887665543 344 5677889999999999888888
Q ss_pred cEEEe
Q 010816 494 VLKLW 498 (500)
Q Consensus 494 ~v~iW 498 (500)
.++|.
T Consensus 461 ql~i~ 465 (1113)
T KOG0644|consen 461 QLYIL 465 (1113)
T ss_pred ceEEe
Confidence 88875
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.7e-20 Score=172.15 Aligned_cols=266 Identities=21% Similarity=0.386 Sum_probs=183.4
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--------CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--------~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
.++..|.+.|..++|+|....|++++.|+++++|++. ..++++++.+|.++|.|+.+.++++++++|+-||+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGT 367 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCce
Confidence 3677899999999999999999999999999999993 23577899999999999999999999999999999
Q ss_pred EEEEeCC------CC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---Cccc
Q 010816 174 LQCWDPQ------TG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTL 241 (500)
Q Consensus 174 i~~wd~~------~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~ 241 (500)
|+.|++- .. ......+.||.+.|..+.+++.. .++++++.||++++|+...... .++. .|..
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-----~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~ 441 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-----DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY 441 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-----cceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence 9999543 11 12334577899888888876543 4799999999999999865543 1111 1111
Q ss_pred cEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 242 ~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
-.++.+.... ++-...+...+.+++.+-....
T Consensus 442 -Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s---------------------------------------------- 473 (577)
T KOG0642|consen 442 -PLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVS---------------------------------------------- 473 (577)
T ss_pred -cceEeeccch-hHhhhhhcccccccchhhhhhh----------------------------------------------
Confidence 1122221111 0000001111111111000000
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
...++-.+.+...+ -...++.+..+|.+.+..++..|+.|+++|..+++++.....|
T Consensus 474 -------~~~~~~s~~~~~~~----------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~ 530 (577)
T KOG0642|consen 474 -------DLLIFESSASPGPR----------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAH 530 (577)
T ss_pred -------heeeccccCCCccc----------------ccCccceEEecCCCCeeEecccCCceecccccccccchheeec
Confidence 00011111111100 0133667788899999999999999999999999999888888
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 471 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~ 471 (500)
...+.++ ++.|+|-+|++++.|+.|++|.+....+......|.
T Consensus 531 ~~svtsl---------------------------ai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 531 KDSVTSL---------------------------AIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cceecce---------------------------eecCCCceEEeecCCceeehhhccchheeecccccc
Confidence 8877776 558999999999999999999987766655554453
No 165
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=7.4e-20 Score=165.04 Aligned_cols=292 Identities=21% Similarity=0.313 Sum_probs=219.0
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
..+.+|.+.|..|.|+..|..|+|||.|..|.+||+..++.......+|...|....|-|. .++..+++++.||.|+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~---s~d~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF---SGDRTIVTSSRDGQVR 212 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCC---CCCcCceeccccCcee
Confidence 4577899999999999999999999999999999999988877778899999988888874 3567899999999999
Q ss_pred EEECCC-CeE--EEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEee---cCCc---eEEEEEecCc
Q 010816 224 IWDVSL-RKC--VICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELK---GHGH---WVNSLALSTE 292 (500)
Q Consensus 224 iwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~---~~~~---~v~~~~~~~~ 292 (500)
+=.+.. +.+ ...+..|..+|.-++..|+. .|++++.|+.+.-+|++++.....+. .+.. ....++..|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 887643 322 34456788889888876653 68999999999999998875433221 1111 2233333321
Q ss_pred ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-----ceee------ecccC
Q 010816 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-----KTRM------TGHQQ 361 (500)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-----~~~~------~~h~~ 361 (500)
....+++|+.|-.++++|.+.-... ...+ ....-
T Consensus 293 -----------------------------------nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v 337 (559)
T KOG1334|consen 293 -----------------------------------NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPV 337 (559)
T ss_pred -----------------------------------CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcc
Confidence 2345788888888888886432111 1111 12234
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCC--C----------ceEE-EEeCCccc--EEEEEeeeeeeecCCCCceeee
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTT--G----------KFVA-VFRGHVGP--VYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~--~----------~~~~-~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
.|++++|+.++.=|.++-.|-.|+++.-.- | ..+. +++||... |..+.
T Consensus 338 ~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN----------------- 400 (559)
T KOG1334|consen 338 NITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN----------------- 400 (559)
T ss_pred cceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee-----------------
Confidence 589999998776555556777899995432 3 2233 48888643 33332
Q ss_pred eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|-|...|+++||.-|.|.||+-.+++.+.-+.|-..-|+||.=+|--..|||+|-|.-||||.
T Consensus 401 ---------FfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 401 ---------FFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWT 464 (559)
T ss_pred ---------eccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeec
Confidence 3688999999999999999999999999999988777889999999889999999999999995
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=1.5e-18 Score=161.32 Aligned_cols=138 Identities=29% Similarity=0.513 Sum_probs=113.3
Q ss_pred CcEEEEeeCCCeEEEEcCCCCC------CCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 329 PERLVSGSDDFTMFLWEPAVSK------QPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~------~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
.++++.+++||.|++|.+.... .+...+..|...|.++.|+| -...||++++|-+|++||+.+++....+.+|
T Consensus 640 ~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gH 719 (1012)
T KOG1445|consen 640 DERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGH 719 (1012)
T ss_pred hHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccC
Confidence 4679999999999999875432 34567889999999999999 4688999999999999999999999999999
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc-cccccCcc-cCEEEEEE
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL-KQDLPGHA-DEVFAVDW 479 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~-~~V~~l~~ 479 (500)
.+.|..+ +|||+|+.+|+.+.||+|++|+-++++. ++.-.|-. .+--.+.|
T Consensus 720 tdqIf~~---------------------------AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~w 772 (1012)
T KOG1445|consen 720 TDQIFGI---------------------------AWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILW 772 (1012)
T ss_pred cCceeEE---------------------------EECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEE
Confidence 9999887 8999999999999999999999877543 22222211 12245667
Q ss_pred cCCCCEEEEEeCCC
Q 010816 480 SPDGEKVASGGKDR 493 (500)
Q Consensus 480 s~dg~~l~s~~~D~ 493 (500)
--||++++..|.|+
T Consensus 773 acdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 773 ACDGRIVIVVGFDK 786 (1012)
T ss_pred EecCcEEEEecccc
Confidence 78999999988875
No 167
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=150.13 Aligned_cols=305 Identities=17% Similarity=0.251 Sum_probs=191.4
Q ss_pred ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 141 TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 141 ~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
.|.+.+.+|...|+|+.|..++ +|.+|..-|.|++|++.+.+.....--.+...|+.+.-.| ++.+.+-+.|.
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p------~d~l~tqgRd~ 77 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIP------NDSLDTQGRDP 77 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecC------CcchhhcCCCc
Confidence 4567788999999999998776 5999999999999999887654432225566676665433 35788899999
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
.+.+|++.....+. -|.-.+.++.|.+-. +...+... ..-.++-+.-...+.. ....-..+.+.++....
T Consensus 78 ~L~lw~ia~s~~i~---i~Si~~nslgFCrfS-l~~~~k~~eqll~yp~rgsde~h~~--D~g~~tqv~i~dd~~~~--- 148 (323)
T KOG0322|consen 78 LLILWTIAYSAFIS---IHSIVVNSLGFCRFS-LVKKPKNSEQLLEYPSRGSDETHKQ--DGGDTTQVQIADDSERS--- 148 (323)
T ss_pred eEEEEEccCcceEE---Eeeeeccccccccce-eccCCCcchhheecCCcccchhhhh--ccCccceeEccCchhcc---
Confidence 99999998755443 244455556554321 11111111 1111111110000000 00000011111110000
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---------CceeeecccCcEEEEEECC
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---------PKTRMTGHQQLVNHVYFSP 370 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---------~~~~~~~h~~~v~~l~~sp 370 (500)
..+..... . ........-.++.|..+|.+.+||+..+.. .......|..+|.++.|.+
T Consensus 149 --Klgsvmc~----------~-~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas 215 (323)
T KOG0322|consen 149 --KLGSVMCQ----------D-KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYAS 215 (323)
T ss_pred --ccCceeee----------e-ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeech
Confidence 00000000 0 000111123578899999999999876421 1223457899999999998
Q ss_pred CCCEEEEEeCCCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816 371 DGQWVASASFDKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s 448 (500)
.-..=++|+.+-.+..|++.. +.+.. ...+ ++ . .+.+..+...||++.+|+++
T Consensus 216 ~~~rGisgga~dkl~~~Sl~~s~gslq~-----~~e~-~l--------k-----------npGv~gvrIRpD~KIlATAG 270 (323)
T KOG0322|consen 216 SCDRGISGGADDKLVMYSLNHSTGSLQI-----RKEI-TL--------K-----------NPGVSGVRIRPDGKILATAG 270 (323)
T ss_pred hhcCCcCCCccccceeeeeccccCcccc-----cceE-Ee--------c-----------CCCccceEEccCCcEEeecc
Confidence 766677888888899998753 22210 0000 00 0 01122234579999999999
Q ss_pred CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 449 ~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|+.||||+.++...+..+.-|.+.|.+++|+||-..+|.+|+|.+|-+|.
T Consensus 271 WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 271 WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 999999999999999999999999999999999999999999999999996
No 168
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=153.18 Aligned_cols=302 Identities=17% Similarity=0.253 Sum_probs=198.3
Q ss_pred ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC------CCceeEEe-cCCCCCEEEEEEcCCCCEEEEEeC
Q 010816 98 NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN------TQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSK 170 (500)
Q Consensus 98 ~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~------~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~ 170 (500)
+.|.+-+.+|.++|.++.|+.++++||+|+.|..+++|+++ +.+++... ..|..-|.|++|......|.+|..
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~ 125 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGER 125 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCC
Confidence 34566778999999999999999999999999999999975 23444332 235578999999998899999999
Q ss_pred CCeEEEEeCCCCCcccccccCcc---cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHK---KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAVT 244 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v~ 244 (500)
+++|.+-|+++.+.+. ...|+ +.|..+..+|.. ..|++.+.++.|.+||.+..+ .+..+........
T Consensus 126 ~~~VI~HDiEt~qsi~--V~~~~~~~~~VY~m~~~P~D-----N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 126 WGTVIKHDIETKQSIY--VANENNNRGDVYHMDQHPTD-----NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred cceeEeeecccceeee--eecccCcccceeecccCCCC-----ceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 9999999999876543 22333 478888877753 479999999999999998654 1222222233445
Q ss_pred EEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 245 CVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 245 ~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
.+.|+|. .+|++.+..+-+.+||.+....- + .++.
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~---------~----------------------------------~~~~ 235 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARP---------V----------------------------------YQRS 235 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccch---------H----------------------------------Hhhh
Confidence 5666654 25667777777777776542100 0 0000
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~ 402 (500)
. ...+......-.++.|+|+|+.|.+--....-.+||.-+.++..--..|.
T Consensus 236 -------------~----------------~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N 286 (609)
T KOG4227|consen 236 -------------M----------------FKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHN 286 (609)
T ss_pred -------------c----------------cccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCC
Confidence 0 00000000112356788988877765444444556655443321111222
Q ss_pred ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc---------------------
Q 010816 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ--------------------- 461 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~--------------------- 461 (500)
..-|+ ....+ -...|. +..-+++|+.+-.|++|.+...
T Consensus 287 ~~GY~----------------N~~T~----KS~~F~-~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~ 345 (609)
T KOG4227|consen 287 PNGYC----------------NIKTI----KSMTFI-DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF 345 (609)
T ss_pred CCcce----------------eeeee----eeeeee-cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence 21111 11011 111232 3445899999999999987431
Q ss_pred --cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 462 --KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 462 --~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+..++||..-+..|.|+|....|++.|-.+.++||.
T Consensus 346 i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 346 IEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecceeEEEecccccccceeecCCcceEeccchhhheeccc
Confidence 11335789999999999999999999999999999994
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4.7e-19 Score=160.13 Aligned_cols=221 Identities=17% Similarity=0.247 Sum_probs=176.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
-.|++......++++|+..+.|+|||+..+.+...+++|...|++|.++.+..+||+++..|.|.|..+.++......-.
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~ 161 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI 161 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec
Confidence 34555555568999999999999999997777778899999999999999999999999999999999988754332222
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC--eEEEEeCCCeEEEEe
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWE 267 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd 267 (500)
+....|.-+.|+|..- ..+.+++.+|.|.+||+........ ...|..+...++|+|.+ +|++.+.|..|.+||
T Consensus 162 ~sgqsvRll~ys~skr----~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 162 DSGQSVRLLRYSPSKR----FLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCCeEEEeecccccc----eeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 2334555677776432 3577899999999999987766554 35799999999999865 688999999999999
Q ss_pred CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
.+..+....+. -.++...+++.++ +..|+.|+..|.|..||++
T Consensus 238 ~~s~~s~~~l~-y~~Plstvaf~~~------------------------------------G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 238 IRSQASTDRLT-YSHPLSTVAFSEC------------------------------------GTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred cccccccceee-ecCCcceeeecCC------------------------------------ceEEEeecCCceEEEEecc
Confidence 98665544443 2345666666654 4578999999999999999
Q ss_pred CCCCCceeeecccCcEEEEEECCCC
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
..+.+......|...|++++|-|..
T Consensus 281 ~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 281 STKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred cCCCCceEeeecccceeEEEeeecc
Confidence 9999999999999999999998764
No 170
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=6.4e-19 Score=152.31 Aligned_cols=282 Identities=15% Similarity=0.232 Sum_probs=185.5
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCccccc-ccCcc-cce
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNP-LSGHK-KWI 196 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~-~~v 196 (500)
..+|++-..|+|++||..++..+..+++|...+..+.|.. ....+.+|+.||+|++||+++.....+. ..++. ...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 5688888999999999999999999999999999999987 3567899999999999999876543322 22333 222
Q ss_pred EEEEeeeeecCCCCceEEEE----eCCCcEEEEECCCCeE-EEE-ecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeC
Q 010816 197 TGISWEPVHLNAPCRRFVSA----SKDGDARIWDVSLRKC-VIC-LSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWET 268 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~----s~dg~v~iwd~~~~~~-~~~-~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~ 268 (500)
.++. .+...+.++.| ..|-.|.+||++..+. +.. ...|...|+++.|.|. +.|++|+-||-|.|||+
T Consensus 121 ~~ld-----~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~ 195 (376)
T KOG1188|consen 121 ICLD-----LNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT 195 (376)
T ss_pred eEee-----ccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence 3332 22233445554 3567899999998766 443 3479999999999875 47999999999999997
Q ss_pred CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (500)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~ 348 (500)
.....-
T Consensus 196 ~~d~Ee-------------------------------------------------------------------------- 201 (376)
T KOG1188|consen 196 KKDNEE-------------------------------------------------------------------------- 201 (376)
T ss_pred CCCcch--------------------------------------------------------------------------
Confidence 542100
Q ss_pred CCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816 349 SKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (500)
Q Consensus 349 ~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 427 (500)
......-.|...|.++.|..++ +.|.+-+...+..+|+++.+.....+.... +.+.. .+--.+...+++
T Consensus 202 --DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~-----~~~~d---~r~~~~~dY~I~ 271 (376)
T KOG1188|consen 202 --DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD-----VSADD---LRKEDNCDYVIN 271 (376)
T ss_pred --hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc-----chhhh---HHhhhhhhheee
Confidence 0000111344568888898776 558888999999999999887543322110 00000 000000011111
Q ss_pred ccccceeeEEcC-CCCEEEEEEC-CCcEEEEEC---CC---ccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 428 MSCCMSLYSWSA-DSRLLLSGSK-DSTLKVWDI---RT---QKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 428 ~~~~~~~~~~s~-~~~~l~s~s~-d~~v~iwd~---~~---~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
..+| ++.+++.++. -+...++-+ .+ .+....+.| |..-|.++.|.-.+..+.|||+||.+.+|
T Consensus 272 --------~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 272 --------EHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred --------cccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 1233 3445555554 455555433 23 233445666 66677888898889999999999999999
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
.
T Consensus 344 k 344 (376)
T KOG1188|consen 344 K 344 (376)
T ss_pred e
Confidence 6
No 171
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=7.1e-19 Score=151.19 Aligned_cols=253 Identities=21% Similarity=0.326 Sum_probs=179.9
Q ss_pred CCcccEEEEEEcCCC----CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCC
Q 010816 106 GHTEAVLSVAFSPDG----RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 106 gh~~~V~~~~~sp~~----~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~ 180 (500)
.|.+.-..++|+.+. .+||.|+.-|.|+|.|+.+++....+.+|...|..+.|.|+. ++|++||.|..|++||++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 477788889998753 479999999999999999999998999999999999999974 789999999999999999
Q ss_pred CCCcccc--cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE------E-------------------
Q 010816 181 TGKPSGN--PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC------V------------------- 233 (500)
Q Consensus 181 ~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~------~------------------- 233 (500)
+..++.. -..+|...|.++.|++ ++.++++++.|.++++|++...+. .
T Consensus 167 ~~~Cv~VfGG~egHrdeVLSvD~~~-----~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~f 241 (385)
T KOG1034|consen 167 TDVCVAVFGGVEGHRDEVLSVDFSL-----DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHF 241 (385)
T ss_pred CCeEEEEecccccccCcEEEEEEcC-----CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccc
Confidence 9876532 3578999999999876 557999999999999999873211 0
Q ss_pred ---EEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEE---EEecCcce-eeeccccCCCC
Q 010816 234 ---ICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNS---LALSTEYA-LRTGAFDHTGK 305 (500)
Q Consensus 234 ---~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~---~~~~~~~~-~~~~~~~~~~~ 305 (500)
.+..-|..+|-|+.|-. +++++-+-++.|..|... -++.+...+......+- +....... ....++|.
T Consensus 242 p~fst~diHrnyVDCvrw~g-d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~--- 317 (385)
T KOG1034|consen 242 PDFSTTDIHRNYVDCVRWFG-DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP--- 317 (385)
T ss_pred ccccccccccchHHHHHHHh-hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH---
Confidence 01224666777777765 367888888899999762 11111111111110000 00000000 00001110
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeeecc--cCcEEEEEECCCCCEEEEEeCCC
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMTGH--QQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~~h--~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
....++.|.+.|.+++||+.....+. ..+..+ ...|...+||.||.+|+..+.|+
T Consensus 318 ----------------------~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~ 375 (385)
T KOG1034|consen 318 ----------------------WQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDG 375 (385)
T ss_pred ----------------------HHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCC
Confidence 12347889999999999998765532 222222 35688999999999999999999
Q ss_pred cEEEEeC
Q 010816 383 SIKLWNG 389 (500)
Q Consensus 383 ~i~lwd~ 389 (500)
+|.-||.
T Consensus 376 ~Vwrwdr 382 (385)
T KOG1034|consen 376 TVWRWDR 382 (385)
T ss_pred cEEEEEe
Confidence 9999985
No 172
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.81 E-value=1e-17 Score=141.79 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=171.8
Q ss_pred cEEEEEEcC--C-CCeEEEEe----CCCcEEEEeCC--CCceeEE-ecCCCCCEEEEEEcCCCC-----EEEEEeCCCeE
Q 010816 110 AVLSVAFSP--D-GRQLASGS----GDTTVRLWDLN--TQTPMFK-CTGHKNWVLCIAWSADGK-----HLVSGSKAGEL 174 (500)
Q Consensus 110 ~V~~~~~sp--~-~~~lat~~----~d~~i~iwd~~--~~~~~~~-~~~h~~~v~~v~~s~~~~-----~l~s~~~d~~i 174 (500)
++.++.|+. + ..+||.|+ ..+.|.|-.+. +++.+.. -..|.-+++.+.|.|+.+ +||+. +..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATS--SDFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcc--cCeE
Confidence 466777773 3 45788887 34566666543 2322211 126889999999999863 56654 3589
Q ss_pred EEEeCCC--CCcc------cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecCccccE
Q 010816 175 QCWDPQT--GKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSGHTLAV 243 (500)
Q Consensus 175 ~~wd~~~--~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~h~~~v 243 (500)
|+|.+.. ++.. ......+..++++..|+...+ +++.++|-|.+..|||++++. ....+-+|...|
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp----~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV 199 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDP----NLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV 199 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCc----ceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence 9998763 2211 112244667899999987544 589999999999999999863 355678999999
Q ss_pred EEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecC---CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 244 TCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGH---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 244 ~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
..++|..++ .+++.|.||++|+||++.-.....+... ..+...+++.+..
T Consensus 200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD------------------------- 254 (364)
T KOG0290|consen 200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD------------------------- 254 (364)
T ss_pred eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC-------------------------
Confidence 999998744 6999999999999999875433322211 2334444443321
Q ss_pred HhhhhhcCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCC
Q 010816 319 ERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~ 391 (500)
++.+++- .+...|.+-|++....+..++.+|+..|+.++|.|. ...|++++.|..+.+||+..
T Consensus 255 ----------pnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q 319 (364)
T KOG0290|consen 255 ----------PNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQ 319 (364)
T ss_pred ----------chHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEeccc
Confidence 2233332 234568889999998999999999999999999995 68999999999999999875
No 173
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.2e-18 Score=166.42 Aligned_cols=295 Identities=21% Similarity=0.322 Sum_probs=198.8
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC---CCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---KNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h---~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~ 180 (500)
+...+-..+.|+|-...++++.+.-.|+|||.+.++.+..+..+ ...|+.+.+-. |..+|++|+.||.|+||+--
T Consensus 1062 ~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1062 GNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred cCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccc
Confidence 44445667899999999999988889999999988876555433 35688888764 45689999999999999642
Q ss_pred -CC--Cc--cc--ccccCc----ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEe
Q 010816 181 -TG--KP--SG--NPLSGH----KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKW 248 (500)
Q Consensus 181 -~~--~~--~~--~~~~~~----~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~ 248 (500)
++ +. +. ..+.++ .+.-.-+.|.. .++.++++|.-..|+|||....+++..+. +....|+++.-
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ-----~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~ 1216 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ-----QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSA 1216 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhh-----hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecc
Confidence 21 11 00 011111 11112234432 34567777778999999998877766543 33445666654
Q ss_pred CC--CCeEEEEeCCCeEEEEeCCCCe---eEEEeecCCce--EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 249 GG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHW--VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 249 ~~--~~~l~t~~~dg~i~lwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+. .+.+++|..||.||+||.+... .+...+.|..+ |..+.+.+.
T Consensus 1217 ~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~----------------------------- 1267 (1387)
T KOG1517|consen 1217 DLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ----------------------------- 1267 (1387)
T ss_pred cccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC-----------------------------
Confidence 43 2478899999999999987653 34555666555 555544332
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCC-CCCceeeeccc--C-cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVS-KQPKTRMTGHQ--Q-LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~-~~~~~~~~~h~--~-~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~ 397 (500)
.-..+++|+.||.|++||++.. .........|- + ..+++..+++...+|+|+. +.|+||++. |+.+..
T Consensus 1268 ------G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 ------GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred ------CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence 1235999999999999999873 22222222332 2 4899999999999999999 999999984 555555
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~ 462 (500)
++.+.+.... .....+.++|+|-.-+||+|+.|.+|.||.....+
T Consensus 1340 ~k~n~~F~~q--------------------~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1340 IKYNPGFMGQ--------------------RIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cccCcccccC--------------------cCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 5433221100 01123556889999999999999999999765443
No 174
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.81 E-value=8.3e-18 Score=142.17 Aligned_cols=289 Identities=23% Similarity=0.301 Sum_probs=193.3
Q ss_pred CCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCC-CCEEEEEeCC-------CeEEEEeCCCCCc---------ccc
Q 010816 128 GDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSAD-GKHLVSGSKA-------GELQCWDPQTGKP---------SGN 187 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~-~~~l~s~~~d-------~~i~~wd~~~~~~---------~~~ 187 (500)
.|+.|.+-+++.+... ..+..|.+.|..++-+|- ...|+++-.+ -.+.||.+..... +..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4566777666543322 234457788999999885 4556665442 2478998753221 111
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEe-----cCccccEEEEEeCC--CCeEEEEeC
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICL-----SGHTLAVTCVKWGG--DGVIYTGSQ 259 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~-----~~h~~~v~~~~~~~--~~~l~t~~~ 259 (500)
.-..+.+.+.++.|.| +..++++.. |..|.+|++..... +..+ .+|....++-+|+| ++.-+....
T Consensus 118 Ldteavg~i~cvew~P-----ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~ 191 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEP-----NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS 191 (370)
T ss_pred CCHHHhCceeeEEEcC-----CCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC
Confidence 1224556899999998 234566554 88999999987654 2222 23455677788887 556666788
Q ss_pred CCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 260 DCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
|++++.||+++.+....+ ..|++.|..+.+.|+ ....++++++|
T Consensus 192 d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpn-----------------------------------kq~~lvt~gDd 236 (370)
T KOG1007|consen 192 DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPN-----------------------------------KQHILVTCGDD 236 (370)
T ss_pred CCcEEEEEccchhhhcchhhhhcceeeeccCCCC-----------------------------------ceEEEEEcCCC
Confidence 999999999987665544 468888888887764 24578999999
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
+.|++||.+..+.+...+.+|..+|.+|.|+|. .++|.+|+.|..|.+|...+-..- ..+.++.-
T Consensus 237 gyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE----------~qi~~~~d---- 302 (370)
T KOG1007|consen 237 GYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSE----------QQIEFEDD---- 302 (370)
T ss_pred ccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccc----------cccccccc----
Confidence 999999999999999999999999999999994 678899999999999976432100 01111000
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE-EEEeCCCcEE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV-ASGGKDRVLK 496 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~s~~~D~~v~ 496 (500)
. +-+++ .|..=|.=-+.. ..++++..|.+.|++++||.-..++ |+-|-||++-
T Consensus 303 ----------e-------se~e~--------~dseer~kpL~d-g~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 303 ----------E-------SESED--------EDSEERVKPLQD-GQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred ----------c-------ccCcc--------hhhHHhcccccc-cccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 0 00000 000001001111 2235667899999999999877775 6779999987
Q ss_pred E
Q 010816 497 L 497 (500)
Q Consensus 497 i 497 (500)
|
T Consensus 357 I 357 (370)
T KOG1007|consen 357 I 357 (370)
T ss_pred e
Confidence 6
No 175
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=142.42 Aligned_cols=257 Identities=21% Similarity=0.365 Sum_probs=187.4
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----C--cee-E----Eec-CCCCCEEEEEEc-------CCCCEEEEEeC
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNT-----Q--TPM-F----KCT-GHKNWVLCIAWS-------ADGKHLVSGSK 170 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----~--~~~-~----~~~-~h~~~v~~v~~s-------~~~~~l~s~~~ 170 (500)
...+.|+|||.-|.+-+.|..+++|++.. + .++ . .+. .....|..-+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45689999999999999999999999742 1 111 0 111 123457777774 67789999999
Q ss_pred CCeEEEEeCCCCCcccc-cccCcccce---EEEEeeeeecCCCCceEEEEeCCCcEEEEEC-CCCeE--EEEe-----cC
Q 010816 171 AGELQCWDPQTGKPSGN-PLSGHKKWI---TGISWEPVHLNAPCRRFVSASKDGDARIWDV-SLRKC--VICL-----SG 238 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~-~~~~~~~~v---~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~-~~~~~--~~~~-----~~ 238 (500)
|.-|++||.-+|+.... .-..|...+ .++.|+| ++.+++ ++....|+++|+ +.+.- +... .+
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~-----DGeqlf-aGykrcirvFdt~RpGr~c~vy~t~~~~k~g 205 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSP-----DGEQLF-AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFG 205 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecC-----CCCeEe-ecccceEEEeeccCCCCCCcchhhhhccccc
Confidence 99999999999975431 112233333 3556655 555554 567889999999 44421 1111 23
Q ss_pred ccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 239 HTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 239 h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
..+.+.|++|+|-. .++.|+...++-||.-..++.+..+-+|+..|+-+.+.++
T Consensus 206 q~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~ed------------------------ 261 (406)
T KOG2919|consen 206 QKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCED------------------------ 261 (406)
T ss_pred ccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccC------------------------
Confidence 36678899999853 6888999999999988888899999999999999998876
Q ss_pred HHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCCCCCCCceeeecccCc-EEE--EEECCCCCEEEEEeCCCcEEEEeCCC-
Q 010816 317 ALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQL-VNH--VYFSPDGQWVASASFDKSIKLWNGTT- 391 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~-v~~--l~~sp~g~~lasgs~Dg~i~lwd~~~- 391 (500)
+++|.+|+. |-.|..||++....+...+..|... --. ....|+|++||+|+.||.|++||+++
T Consensus 262 ------------Gn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~ 329 (406)
T KOG2919|consen 262 ------------GNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDL 329 (406)
T ss_pred ------------cCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCC
Confidence 356777765 7789999999888888888777652 223 45568999999999999999999998
Q ss_pred CceEEEEeCCcccEEEEE
Q 010816 392 GKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 392 ~~~~~~~~~h~~~v~~~~ 409 (500)
|..+.++..|..-++.+.
T Consensus 330 gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 330 GNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred CCccccccccccccccee
Confidence 666766666666666553
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.4e-17 Score=140.65 Aligned_cols=229 Identities=17% Similarity=0.325 Sum_probs=159.9
Q ss_pred ccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCC--CC-------ceeEEecCCCCCEEEEEEcCC--CCEEE
Q 010816 100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLN--TQ-------TPMFKCTGHKNWVLCIAWSAD--GKHLV 166 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~--~~-------~~~~~~~~h~~~v~~v~~s~~--~~~l~ 166 (500)
|...-+.|.+.|..+.|.+ -|+.+|+++.|++++||.-. .. .....+......|+.|.|.|. |-+||
T Consensus 51 ~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA 130 (361)
T KOG2445|consen 51 CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLA 130 (361)
T ss_pred EeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEE
Confidence 3344567999999999965 48999999999999999741 11 122345566788999999995 77899
Q ss_pred EEeCCCeEEEEeCCCCCc------------ccccccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCC
Q 010816 167 SGSKAGELQCWDPQTGKP------------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSL 229 (500)
Q Consensus 167 s~~~d~~i~~wd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~ 229 (500)
+++.||.+|||+.-.--. ...+...+.....+++|+|..... ..|+.|+.+ +.++||....
T Consensus 131 ~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~--p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 131 AASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHE--PLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccC--ceEEEEcccCCccccceEEEEecC
Confidence 999999999998543211 111233566778899999765432 356776665 4889997653
Q ss_pred C----eEEEEecCccccEEEEEeCCCC-----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 230 R----KCVICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 230 ~----~~~~~~~~h~~~v~~~~~~~~~-----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
. ..+.++.+|+.+|++++|.|+- .|++++.|| |+||.+..... .+..
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s--~i~~--------------------- 264 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARS--AIEE--------------------- 264 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccc--hhhh---------------------
Confidence 3 2355678999999999999862 588999999 99998753210 0000
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~ 380 (500)
+...++..-+.+ .-.....+.+|...|..+.|+-.|..|++.+.
T Consensus 265 -----------------------------ee~~~~~~~~~l-------~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 265 -----------------------------EEVLAPDLMTDL-------PVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred -----------------------------hcccCCCCcccc-------ceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 000011100000 01123345689999999999999999999999
Q ss_pred CCcEEEEeCC
Q 010816 381 DKSIKLWNGT 390 (500)
Q Consensus 381 Dg~i~lwd~~ 390 (500)
||.||+|...
T Consensus 309 DG~VRLWkan 318 (361)
T KOG2445|consen 309 DGCVRLWKAN 318 (361)
T ss_pred Cceeeehhhh
Confidence 9999999753
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.3e-18 Score=156.60 Aligned_cols=227 Identities=20% Similarity=0.302 Sum_probs=168.8
Q ss_pred EecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCC--------eeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 235 CLSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQG--------KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 235 ~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
++..|...|+++.|.+ .+.|++++.||+|++|++... +.+.++.+|..+|.|+++.+.
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n------------- 355 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSN------------- 355 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCC-------------
Confidence 4567888888888875 457999999999999999321 356788999999999988764
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC------C---CCceeeecccCcEEEEEECCCCCEEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS------K---QPKTRMTGHQQLVNHVYFSPDGQWVA 376 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~------~---~~~~~~~~h~~~v~~l~~sp~g~~la 376 (500)
.+.+.+|+.||+|+.|++... . .....+.||.+.|+.+++|+....|+
T Consensus 356 -----------------------~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Ll 412 (577)
T KOG0642|consen 356 -----------------------GEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLL 412 (577)
T ss_pred -----------------------ceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccccee
Confidence 467899999999999954321 1 23346789999999999999998999
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeee----------------eec-------CCCCceeeeeccc
Q 010816 377 SASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIY----------------CFR-------YPSNFYCVVDMSC 430 (500)
Q Consensus 377 sgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~----------------~~~-------~~~~~~~~~~~~~ 430 (500)
+++.||++|+|+...... .+|.. |.-+. .+.+.... ... +++.........+
T Consensus 413 scs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl-svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~ 490 (577)
T KOG0642|consen 413 SCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL-SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP 490 (577)
T ss_pred eecCCceEEeeccCCcCc-cccCCccccCCcc-eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence 999999999999876655 22322 22221 11111000 000 0000000011112
Q ss_pred cceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 431 CMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 431 ~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+..+.+.|++.+.+++..|+.|+++|..+++.+.....|...|+++++.|+|-+|++++.||.+++|.
T Consensus 491 ~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 491 QINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhh
Confidence 233455688889999999999999999999999999999999999999999999999999999999995
No 178
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1.2e-17 Score=154.47 Aligned_cols=274 Identities=18% Similarity=0.263 Sum_probs=188.4
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
..+.||++.|.|++..|.|..|++|+.||+|++|.+.+|+++.... -...|.+++|+|... ...+++ +.+..+-
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~---~~vLAv-A~~~~~~ 467 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSD---LCVLAV-AVGECVL 467 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCC---ceeEEE-EecCceE
Confidence 4567999999999999999999999999999999999999876432 245789999998542 223443 3333465
Q ss_pred EEECCCCeEEEEecCccccEEEEEeCCCCeEEEE----eCCCeEEEEeCCCC----eeEEEeecCCceEEEEEecCccee
Q 010816 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG----SQDCTIKVWETTQG----KLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~----~~dg~i~lwd~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
|-+...|..+.. + ..+..|.++ ..|+.+..|.-... +-++....|...|..+.++..
T Consensus 468 ivnp~~G~~~e~--~----------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk--- 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEV--G----------PTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK--- 532 (733)
T ss_pred EeCccccchhhh--c----------chhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---
Confidence 655443321110 0 001122222 23556677754311 113344456677777777654
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC---CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
+++|++... ...|.|+++..... +.-+....+.|.++.|+|.-
T Consensus 533 ---------------------------------GDYlatV~~~~~~~~VliHQLSK~~s-Q~PF~kskG~vq~v~FHPs~ 578 (733)
T KOG0650|consen 533 ---------------------------------GDYLATVMPDSGNKSVLIHQLSKRKS-QSPFRKSKGLVQRVKFHPSK 578 (733)
T ss_pred ---------------------------------CceEEEeccCCCcceEEEEecccccc-cCchhhcCCceeEEEecCCC
Confidence 345555433 35678887643321 12233334568999999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816 373 QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (500)
Q Consensus 373 ~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~ 452 (500)
.+|+.++. +.|++||+...++++.+......|..+ +.+|.|.-|+.|+.|+.
T Consensus 579 p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~m---------------------------sihp~GDnli~gs~d~k 630 (733)
T KOG0650|consen 579 PYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSM---------------------------SIHPNGDNLILGSYDKK 630 (733)
T ss_pred ceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeee---------------------------eecCCCCeEEEecCCCe
Confidence 88877654 689999998877665544333333333 56899999999999999
Q ss_pred EEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 453 LKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 453 v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+..||+.-. +..+.+.-|...|.+|+|++.=..+++|+.||++.|+++
T Consensus 631 ~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 631 MCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred eEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 999998754 566788889999999999999999999999999999875
No 179
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.1e-17 Score=144.63 Aligned_cols=271 Identities=16% Similarity=0.248 Sum_probs=186.0
Q ss_pred EeEEecc--cccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCCCCcee--EEecCCC-CCEEEEEEcCCCCE
Q 010816 92 FRIRPVN--RCSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHK-NWVLCIAWSADGKH 164 (500)
Q Consensus 92 ~~~~~~~--~~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~~~~--~~~~~h~-~~v~~v~~s~~~~~ 164 (500)
+++.... +....+++|.+.+..++|.. .+..+.+|+.||+||+||+...... .....|. .+..|++-+-++..
T Consensus 52 v~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~i 131 (376)
T KOG1188|consen 52 VRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNI 131 (376)
T ss_pred EEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCe
Confidence 4444333 35677899999999999988 4678999999999999999876544 3344555 56788887777778
Q ss_pred EEEEe----CCCeEEEEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEe
Q 010816 165 LVSGS----KAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICL 236 (500)
Q Consensus 165 l~s~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~ 236 (500)
+++|. .|-.|.+||++..+. ++.....|.+.|+++.|+|..+ ..+++||.||.|.++|+.... .+...
T Consensus 132 i~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p----nlLlSGSvDGLvnlfD~~~d~EeDaL~~v 207 (376)
T KOG1188|consen 132 IACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP----NLLLSGSVDGLVNLFDTKKDNEEDALLHV 207 (376)
T ss_pred EEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC----CeEEeecccceEEeeecCCCcchhhHHHh
Confidence 88775 367899999988766 6667789999999999999654 489999999999999987542 12222
Q ss_pred cCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 237 SGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 237 ~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
-.|...|.++.|.+++ .|.+-+...+..+|++..+.....+.... +..... ...
T Consensus 208 iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~--~~~~d~----------------------r~~ 263 (376)
T KOG1188|consen 208 INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPD--VSADDL----------------------RKE 263 (376)
T ss_pred hcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCcc--chhhhH----------------------Hhh
Confidence 3566789999999988 79999999999999998876443322110 000000 000
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCC-----CCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 315 KAALERYNKIKGNAPERLVSGSD-DFTMFLWEPA-----VSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~-----~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
....+..+.......+.++.++. -+...++-+. ........+.+ |...|+++.|...+.++.||+.||.+.+|
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 00011111121222334444433 4555444322 11223344544 78889999999999999999999999999
Q ss_pred eCC
Q 010816 388 NGT 390 (500)
Q Consensus 388 d~~ 390 (500)
..+
T Consensus 344 k~~ 346 (376)
T KOG1188|consen 344 KVE 346 (376)
T ss_pred ecC
Confidence 853
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.78 E-value=1.2e-16 Score=154.48 Aligned_cols=265 Identities=19% Similarity=0.331 Sum_probs=184.9
Q ss_pred CcEEEEeCCCC-ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCCCcc-----cccccCcccceEEEEee
Q 010816 130 TTVRLWDLNTQ-TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDPQTGKPS-----GNPLSGHKKWITGISWE 202 (500)
Q Consensus 130 ~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~v~~~~~~ 202 (500)
+.+.||++... .+-..+ .-...|.|+.|+|. ..+|+.|.++|.|.+||++.+... ......|...+..+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999876 333333 24678999999995 567888999999999999876541 22345788999999998
Q ss_pred eeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-----ec-------CccccEEEEEeCCC--CeEEEEeCCCeEEEEeC
Q 010816 203 PVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-----LS-------GHTLAVTCVKWGGD--GVIYTGSQDCTIKVWET 268 (500)
Q Consensus 203 ~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-----~~-------~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~ 268 (500)
.... ...|+++|.||.|..|+++.-.+... .. .-...++++.|.+. ..++.|+.+|.|.--+.
T Consensus 301 ~~~~---~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 301 QNEH---NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred ccCC---CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEec
Confidence 6332 25799999999999998865433110 01 12345788888653 36889999999877432
Q ss_pred CC---Ce-----eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 269 TQ---GK-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 269 ~~---~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
.. +. .+..+..|..+|.++..+|-+ ...|++++ |.+
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~-----------------------------------~k~fls~g-DW~ 421 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY-----------------------------------PKNFLSVG-DWT 421 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCc-----------------------------------cceeeeec-cce
Confidence 21 11 122344566677777666532 12345554 999
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
++||.......+...+..+.+.|.+++|||. ...||++..||.|.+||+.. .+.+|+.+....
T Consensus 422 vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~--------~~~~Pv~s~~~~-------- 485 (555)
T KOG1587|consen 422 VRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ--------DDEEPVLSQKVC-------- 485 (555)
T ss_pred eEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc--------cccCCccccccc--------
Confidence 9999866455666666777888999999995 46888999999999999853 334444433221
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
........|+++|++|++|...|++++|++.
T Consensus 486 ---------~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 486 ---------SPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ---------ccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1112233678999999999999999999985
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=2.7e-17 Score=144.86 Aligned_cols=162 Identities=24% Similarity=0.411 Sum_probs=133.2
Q ss_pred ccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAG 172 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~ 172 (500)
....||+++|..++|+|- ...||+||.|.+|.||++..+ +++..+.||...|--++|+|. .+.|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999995 567999999999999998543 456788999999999999996 46889999999
Q ss_pred eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc-EEEEEeCCC
Q 010816 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD 251 (500)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~ 251 (500)
+|.+||+.+|+.... +. |...|.+++|+. ++.++++.+.|+.|||||.++++.+..-.+|.+. -..+.|-.+
T Consensus 155 ~v~iWnv~tgeali~-l~-hpd~i~S~sfn~-----dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT-LD-HPDMVYSMSFNR-----DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCceeee-cC-CCCeEEEEEecc-----CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc
Confidence 999999999986543 33 999999999864 6779999999999999999999999887777543 223456667
Q ss_pred CeEEEEe----CCCeEEEEeCCC
Q 010816 252 GVIYTGS----QDCTIKVWETTQ 270 (500)
Q Consensus 252 ~~l~t~~----~dg~i~lwd~~~ 270 (500)
+.+++.+ .+..+-+||...
T Consensus 228 g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 228 GKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CceeeeccccccccceeccCccc
Confidence 7677655 467789998543
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.2e-16 Score=140.91 Aligned_cols=201 Identities=23% Similarity=0.391 Sum_probs=155.0
Q ss_pred EecCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCe-------eEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 235 CLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGK-------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 235 ~~~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
.+.||+.+|..++|+| |..|++||.|.+|.||++..+- .+..+.+|...|.-++++|.-
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA------------ 143 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTA------------ 143 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccc------------
Confidence 3579999999999987 5589999999999999987653 356778899999999888741
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~ 385 (500)
.+.|++++.|.+|.+|++........ + .|++.|.+++|+.||.+|++.+.|..||
T Consensus 144 -----------------------~NVLlsag~Dn~v~iWnv~tgeali~-l-~hpd~i~S~sfn~dGs~l~TtckDKkvR 198 (472)
T KOG0303|consen 144 -----------------------PNVLLSAGSDNTVSIWNVGTGEALIT-L-DHPDMVYSMSFNRDGSLLCTTCKDKKVR 198 (472)
T ss_pred -----------------------hhhHhhccCCceEEEEeccCCceeee-c-CCCCeEEEEEeccCCceeeeecccceeE
Confidence 34588999999999999877654433 3 3999999999999999999999999999
Q ss_pred EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE---CCCcEEEEECCCcc
Q 010816 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS---KDSTLKVWDIRTQK 462 (500)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s---~d~~v~iwd~~~~~ 462 (500)
|||.++++.+....+|.+.-..- ..|-.+|.++.+|- .+..+-|||-...+
T Consensus 199 v~dpr~~~~v~e~~~heG~k~~R--------------------------aifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKPAR--------------------------AIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred EEcCCCCcEeeecccccCCCcce--------------------------eEEeccCceeeeccccccccceeccCccccc
Confidence 99999999998888887752210 13456777555553 46788899865433
Q ss_pred c---cccccCcccCEEEEEEcCCCCEEEEE-eCCCcEEEec
Q 010816 463 L---KQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLKLWM 499 (500)
Q Consensus 463 ~---~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~iW~ 499 (500)
. ...+.. ...|.--=|.||.+.++.+ -.|+.||.|+
T Consensus 253 eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 253 EPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred CcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 2 334433 3456666688998888755 5689999876
No 183
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=3.4e-16 Score=146.71 Aligned_cols=241 Identities=20% Similarity=0.310 Sum_probs=171.5
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
....+++||.+.|.|++++.||+++|+|+.|..|.||+-.-.. +... .|++.|.|+.|+|-...|+||+.. ..-+|.
T Consensus 44 ~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG-~LkY-SH~D~IQCMsFNP~~h~LasCsLs-dFglWS 120 (1081)
T KOG1538|consen 44 TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG-ILKY-SHNDAIQCMSFNPITHQLASCSLS-DFGLWS 120 (1081)
T ss_pred ccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc-eeee-ccCCeeeEeecCchHHHhhhcchh-hccccC
Confidence 4567899999999999999999999999999999999854222 1222 599999999999999999998864 567887
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE--EecCccccEEEEEeCCCC----
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG---- 252 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~---- 252 (500)
.......+ ......+.+.+|.. ++..|+.|-.||+|.|-+-.....+. .-.|.+.+|.+++|+|..
T Consensus 121 ~~qK~V~K---~kss~R~~~CsWtn-----DGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 121 PEQKSVSK---HKSSSRIICCSWTN-----DGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred hhhhhHHh---hhhheeEEEeeecC-----CCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 76543222 12235677888853 67799999999999988654332222 223578899999998742
Q ss_pred --eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 253 --VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 253 --~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
.++...+..++..+.+. |+.+..- ..+.+.|. -. -...+++
T Consensus 193 ~di~aV~DW~qTLSFy~Ls-G~~Igk~-------r~L~FdP~-----------Ci------------------sYf~NGE 235 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLS-GKQIGKD-------RALNFDPC-----------CI------------------SYFTNGE 235 (1081)
T ss_pred cceEEEEeccceeEEEEec-ceeeccc-------ccCCCCch-----------hh------------------eeccCCc
Confidence 56777777777777664 3322110 01111110 00 0112467
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
.++.|+.|+.+.+|... ......+.....+|++++..|++++++.|+.||+|-.|++
T Consensus 236 y~LiGGsdk~L~~fTR~--GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD--GVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred EEEEccCCCceEEEeec--CeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence 89999999999998621 1222334446778999999999999999999999999874
No 184
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=7.2e-17 Score=142.82 Aligned_cols=125 Identities=33% Similarity=0.604 Sum_probs=105.3
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--------C-----C---ceeEEecCCCCCEEEEEEcCCCCEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--------T-----Q---TPMFKCTGHKNWVLCIAWSADGKHL 165 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--------~-----~---~~~~~~~~h~~~v~~v~~s~~~~~l 165 (500)
..|.+|...|+++.|+|+|.+||+|+.+|.|.+|-.. + . .....+.+|...|..++|+|++..+
T Consensus 59 s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l 138 (434)
T KOG1009|consen 59 SSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFL 138 (434)
T ss_pred ecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCcee
Confidence 5678999999999999999999999999999999765 2 1 1124567899999999999999999
Q ss_pred EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE
Q 010816 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC 232 (500)
Q Consensus 166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~ 232 (500)
++++.|..+++||+..|.... .+..|...+..++|.|.. +.+++-+.|...+.+.+...+.
T Consensus 139 ~s~s~dns~~l~Dv~~G~l~~-~~~dh~~yvqgvawDpl~-----qyv~s~s~dr~~~~~~~~~~~~ 199 (434)
T KOG1009|consen 139 VSGSVDNSVRLWDVHAGQLLA-ILDDHEHYVQGVAWDPLN-----QYVASKSSDRHPEGFSAKLKQV 199 (434)
T ss_pred eeeeccceEEEEEeccceeEe-eccccccccceeecchhh-----hhhhhhccCcccceeeeeeeee
Confidence 999999999999999997654 578899999999999854 4677888888777777655443
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=5.8e-17 Score=148.15 Aligned_cols=266 Identities=16% Similarity=0.255 Sum_probs=178.3
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeee----cCCCCceEEEEeCCCcEE
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH----LNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~s~s~dg~v~ 223 (500)
.|..-|.|+.|+.+...+.+++++..+.-||+.+..... ..-....+...-+ +.. -......|+.++.||.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~--~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEV--AKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhh--hhCCcccCCcccc-ccccccCCCCCcceEEEEcCCceEE
Confidence 466678899999887666665544445555554332211 1111111111000 100 111235799999999998
Q ss_pred EEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 224 IWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
|.+ +.++......+|.+.+.|-.|++||. |++++.||.|++|. ++|.+-.++.....+|.|+++.|+..
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~-------- 158 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSN-------- 158 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCC--------
Confidence 876 34555556778999999999999995 89999999999997 56666556666778899999987631
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
..+.+.+ +.+.+=. ........+...|.+.|.+++|+|..+++++|++|-
T Consensus 159 ---------------------------~vl~c~g--~h~~IKp-L~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~ 208 (737)
T KOG1524|consen 159 ---------------------------SIVFCQG--GHISIKP-LAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDF 208 (737)
T ss_pred ---------------------------ceEEecC--CeEEEee-cccccceeEEeccCcEEEEeecCccccceeecCCce
Confidence 1222222 2222221 122233445678999999999999999999999999
Q ss_pred cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~ 462 (500)
..++||.. |+.+..-..|.-+|+++ +|.|+ ..++.+|.. +.|
T Consensus 209 kfKvWD~~-G~~Lf~S~~~ey~ITSv---------------------------a~npd-~~~~v~S~n-t~R-------- 250 (737)
T KOG1524|consen 209 RFKIWDAQ-GANLFTSAAEEYAITSV---------------------------AFNPE-KDYLLWSYN-TAR-------- 250 (737)
T ss_pred eEEeeccc-CcccccCChhccceeee---------------------------eeccc-cceeeeeee-eee--------
Confidence 99999974 55555556688888777 67898 666666543 222
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+ . ....+.|+.++||+||..++.|...|.+.+
T Consensus 251 ~-~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 251 F-S--SPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred e-c--CCCccceEEEEEcCCCceeeccccCceEEE
Confidence 1 1 123567999999999999999998887643
No 186
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=1.3e-16 Score=143.40 Aligned_cols=249 Identities=13% Similarity=0.240 Sum_probs=174.3
Q ss_pred CcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCce--eEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 107 HTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTP--MFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 107 h~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~--~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
-.-+|.++.|.|+|. .+++++.-..+..||+.+.+. +....++. ..+.....++++++|+.++..|.|.+-...++
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~ 335 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK 335 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh
Confidence 356899999999999 899999999999999987643 23334554 45677888999999999999999999988887
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCC-eEEEEeCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~-~l~t~~~d 260 (500)
+.+... .-.+.|.++.|. .+++.+++++.+|.|++||++...|+..+.... ..-++++.+.++ ++++|+..
T Consensus 336 eli~s~--KieG~v~~~~fs-----Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 336 ELITSF--KIEGVVSDFTFS-----SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred hhhhee--eeccEEeeEEEe-----cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 654321 124567777776 356788999999999999999998887664321 111333434443 67778888
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
|.|.|||..+-..
T Consensus 409 GiVNIYd~~s~~~------------------------------------------------------------------- 421 (514)
T KOG2055|consen 409 GIVNIYDGNSCFA------------------------------------------------------------------- 421 (514)
T ss_pred ceEEEeccchhhc-------------------------------------------------------------------
Confidence 8888887532100
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC--CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF--DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~--Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
.....|...+..-...|+++.|+||++.||.+|. +..+|+-.+.+......|.....++.
T Consensus 422 ------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg------------ 483 (514)
T KOG2055|consen 422 ------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVG------------ 483 (514)
T ss_pred ------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCccc------------
Confidence 0001122222222345899999999999987765 56788877766554444443333322
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
.++.++|||.|.+||.|..+|.|++|.+.
T Consensus 484 ------------~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 484 ------------HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ------------ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 23445889999999999999999999763
No 187
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=4.5e-17 Score=147.31 Aligned_cols=291 Identities=21% Similarity=0.314 Sum_probs=208.9
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD 178 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd 178 (500)
..|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+.+...+ .||...|....|-|. ...+++++.||.+++=.
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 457899999999999999999999999999999999988877665 589888888888885 35789999999999876
Q ss_pred CC-CCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE---EecCccc---cEEEEEeCC
Q 010816 179 PQ-TGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI---CLSGHTL---AVTCVKWGG 250 (500)
Q Consensus 179 ~~-~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~---~~~~h~~---~v~~~~~~~ 250 (500)
+. ++... ...+..|...|.-++..|... ..|.+++.|+.+.-.|++.+.... +...+.. ...+++..|
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P 291 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDP 291 (559)
T ss_pred eccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCC
Confidence 53 33322 234567888888888777543 469999999999999998764322 2222322 445666665
Q ss_pred C--CeEEEEeCCCeEEEEeCCCCee------EEEeec------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 251 D--GVIYTGSQDCTIKVWETTQGKL------IRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 251 ~--~~l~t~~~dg~i~lwd~~~~~~------~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
. +.+++|+.|-.+++||.+.-.. +..+.. ...-|++++++
T Consensus 292 ~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ys-------------------------- 345 (559)
T KOG1334|consen 292 RNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYS-------------------------- 345 (559)
T ss_pred CCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEec--------------------------
Confidence 4 3689999999999999764221 111110 01122333222
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-----------Cc-eeeecccC--cEEEEE-ECCCCCEEEEEeCC
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-----------PK-TRMTGHQQ--LVNHVY-FSPDGQWVASASFD 381 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-----------~~-~~~~~h~~--~v~~l~-~sp~g~~lasgs~D 381 (500)
+.+..++++..|--|+++....... .. ...+||.. .|..+- |-|...++++||.-
T Consensus 346 ----------h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDC 415 (559)
T KOG1334|consen 346 ----------HDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDC 415 (559)
T ss_pred ----------CCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCcc
Confidence 1233456667777888885322111 11 22567764 366675 57899999999999
Q ss_pred CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
|.|-+|+-.+++++.-++|...-|+|+.. +|---.||+.+-|..||||--.
T Consensus 416 GhIFiW~K~t~eii~~MegDr~VVNCLEp---------------------------HP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 416 GHIFIWDKKTGEIIRFMEGDRHVVNCLEP---------------------------HPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ceEEEEecchhHHHHHhhcccceEeccCC---------------------------CCCCchhhccCCccceeeecCC
Confidence 99999999999999888887777777743 4555689999999999999753
No 188
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.8e-16 Score=141.34 Aligned_cols=201 Identities=22% Similarity=0.352 Sum_probs=140.5
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC
Q 010816 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG 191 (500)
Q Consensus 112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 191 (500)
.+++|+++|..|++|+.||++|||++.+-..+.....|...|.++.|+|||+.|++-+.| ..++|+.++|......-..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 689999999999999999999999988877777778899999999999999999999999 9999999988443211100
Q ss_pred cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-----eEEE-EeCCCeEEE
Q 010816 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-----VIYT-GSQDCTIKV 265 (500)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~t-~~~dg~i~l 265 (500)
.+.. ....+.|+.|+ ++++ ...-+.|+.
T Consensus 227 ~k~~----------------------------------------------~~~~cRF~~d~~~~~l~laa~~~~~~~v~~ 260 (398)
T KOG0771|consen 227 SKDE----------------------------------------------MFSSCRFSVDNAQETLRLAASQFPGGGVRL 260 (398)
T ss_pred ccch----------------------------------------------hhhhceecccCCCceEEEEEecCCCCceeE
Confidence 0000 00111222221 1111 112233444
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||+. +|+
T Consensus 261 ~~~~-------------------------------------------------------------------------~w~ 267 (398)
T KOG0771|consen 261 CDIS-------------------------------------------------------------------------LWS 267 (398)
T ss_pred EEee-------------------------------------------------------------------------eec
Confidence 4421 121
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-eCCcccEEEEEeeeeeeecCCCCcee
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYC 424 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~ 424 (500)
-. ......+...-...|.+++.|+||+++|.|+.||.|-|++..+-+.+... +.|.+.|+.+
T Consensus 268 ~~-~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~l---------------- 330 (398)
T KOG0771|consen 268 GS-NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGL---------------- 330 (398)
T ss_pred cc-cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeE----------------
Confidence 10 00000111112246899999999999999999999999999988876554 4688888777
Q ss_pred eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
.|+|+.+++++.+.|.++.|..+..
T Consensus 331 -----------tF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 331 -----------TFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred -----------EEcCCcCcccccccCCceeEEEEee
Confidence 4599999999999999999887654
No 189
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.74 E-value=7.3e-16 Score=149.05 Aligned_cols=244 Identities=18% Similarity=0.255 Sum_probs=176.0
Q ss_pred cccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCce--eE----EecCCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEe
Q 010816 108 TEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQTP--MF----KCTGHKNWVLCIAWSADG--KHLVSGSKAGELQCWD 178 (500)
Q Consensus 108 ~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~~--~~----~~~~h~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd 178 (500)
...|+|+.|+|. ..+||.|..+|.|.+||+..+.. .. ....|..++..+.|..+- .-+++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 568999999995 56788888999999999976543 22 223688999999997653 4599999999999998
Q ss_pred CCCCCccc-----cccc------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE---ECCCCe-----EEEEecCc
Q 010816 179 PQTGKPSG-----NPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW---DVSLRK-----CVICLSGH 239 (500)
Q Consensus 179 ~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw---d~~~~~-----~~~~~~~h 239 (500)
++.-.... .... .-...++++.|.+..+ ..|+.|+.+|.|.-= +.+... ....+..|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p----~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h 397 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP----NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITH 397 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCC----ceEEEEcCCcEEEEEeccCCccccccccccccccccc
Confidence 75322100 0000 1123567888877554 479999999988762 222221 12344567
Q ss_pred cccEEEEEeCCCC--eEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 240 TLAVTCVKWGGDG--VIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 240 ~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
.++|.++.++|=+ .+++++ |-++++|... ....+-.+..+...+.+++++|..
T Consensus 398 ~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptr----------------------- 453 (555)
T KOG1587|consen 398 IGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTR----------------------- 453 (555)
T ss_pred CcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcC-----------------------
Confidence 8899999988733 344555 9999999876 555666666677778999988752
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~ 391 (500)
+..|+++..||.+.+||+.... .+.....-+....+.+.|+++|+.|++|...|.+.+|++..
T Consensus 454 ------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 454 ------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ------------ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 4578999999999999986433 34444333455677888999999999999999999999854
No 190
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=6.7e-16 Score=151.89 Aligned_cols=286 Identities=15% Similarity=0.259 Sum_probs=190.0
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccC--cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 228 (500)
++-..+.|+|-...++++...-.|++||.+.++.....-.+ ....|+.+.+- +..++..+++|+.||.||||+--
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~li---Ne~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELI---NEQDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeee---cccchhheeeeccCceEEEeccc
Confidence 34567888888888999988889999999988764322111 12455555542 34566789999999999999642
Q ss_pred -----CCeEEEEecC---cc----ccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecC-CceEEEEEecCcce
Q 010816 229 -----LRKCVICLSG---HT----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYA 294 (500)
Q Consensus 229 -----~~~~~~~~~~---h~----~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 294 (500)
+.+.+....+ +. ..-.-+.|.. .|.|+++|.-..|||||...-..++.+... ..-++++....
T Consensus 1142 ~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~--- 1218 (1387)
T KOG1517|consen 1142 ADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADL--- 1218 (1387)
T ss_pred ccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccc---
Confidence 2233332221 11 1112245653 467888888899999999876665554322 22233322111
Q ss_pred eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC--CceeeecccCc--EEEEEECC
Q 010816 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--PKTRMTGHQQL--VNHVYFSP 370 (500)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~--~~~~~~~h~~~--v~~l~~sp 370 (500)
..++.+++|-.||.|++||.+.... .......|.+. |..+.+.+
T Consensus 1219 --------------------------------~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~ 1266 (1387)
T KOG1517|consen 1219 --------------------------------VHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQR 1266 (1387)
T ss_pred --------------------------------cCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeec
Confidence 1246799999999999999875443 45566788877 99999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816 371 DGQ-WVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (500)
Q Consensus 371 ~g~-~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 447 (500)
+|- .|++|+.||.|++||++...... ....|- +.....+.+..+++...+|+|
T Consensus 1267 ~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~------------------------~yGs~lTal~VH~hapiiAsG 1322 (1387)
T KOG1517|consen 1267 QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW------------------------EYGSALTALTVHEHAPIIASG 1322 (1387)
T ss_pred CCCcceeeeccCCeEEEEecccCcccccceeeecc------------------------ccCccceeeeeccCCCeeeec
Confidence 875 49999999999999998632111 111111 000112333457788899999
Q ss_pred ECCCcEEEEECCCcccc--cc---ccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 448 SKDSTLKVWDIRTQKLK--QD---LPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 448 s~d~~v~iwd~~~~~~~--~~---~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+. +.|+||++...++. +. +.+ -.+.+.++.|+|-.-.||.|..|.+|-||.
T Consensus 1323 s~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1323 SA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred Cc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence 99 99999998764331 11 111 234678999999988999999999999874
No 191
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=7.3e-17 Score=147.92 Aligned_cols=165 Identities=24% Similarity=0.380 Sum_probs=126.0
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW 177 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~w 177 (500)
.++|.||++.|.|++|+.+|.+||+|+.|..+.|||.-..++++.+ +||.+-|.|+.|-|. ..+++||..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 3568899999999999999999999999999999999877777654 699999999999984 5688999999999999
Q ss_pred eCCCCCc---------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEe---------cC
Q 010816 178 DPQTGKP---------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SG 238 (500)
Q Consensus 178 d~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~---------~~ 238 (500)
|+...+. .......|...|..++-.|..+ ..|-+++.||+++-+|++... |.... .+
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P----htfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~ 198 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP----HTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNP 198 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCC----ceEEEecCCcceeeecccCCccCCccccccHHHHHhch
Confidence 9975221 1223456777777776555332 479999999999999998632 11110 11
Q ss_pred ccccEEEEEeCCC--CeEEEEeCCCeEEEEeCC
Q 010816 239 HTLAVTCVKWGGD--GVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 239 h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~ 269 (500)
.-....|+..+|. .+|+.|+.|-..++||.+
T Consensus 199 ~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 199 QLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred hhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1123456666664 478999999999999964
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.3e-15 Score=144.10 Aligned_cols=293 Identities=22% Similarity=0.276 Sum_probs=191.2
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC--C--ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT--Q--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~--~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..|+-.++|.++||+++++|+|..||.|.+|.--. . .....+.-|...|.+++|+++|.+|+||+..+.+.+|...
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 35777899999999999999999999999996322 1 1223455788999999999999999999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---c--------cccEEEEEeC
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---H--------TLAVTCVKWG 249 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h--------~~~v~~~~~~ 249 (500)
+++ ++.++.-...|..+.++| ++..++..-.|..|.+-.........++.| . ..-.+-+.++
T Consensus 282 T~~--kqfLPRLgs~I~~i~vS~-----ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id 354 (792)
T KOG1963|consen 282 TGK--KQFLPRLGSPILHIVVSP-----DSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID 354 (792)
T ss_pred CCC--cccccccCCeeEEEEEcC-----CCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEc
Confidence 987 345667778899999886 445677777788888776543222211111 1 1223345555
Q ss_pred C-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 250 G-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 250 ~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
| .+.++-.+..|.|.+||+.+.+.+..+..-.. ..+
T Consensus 355 pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~-----n~~-------------------------------------- 391 (792)
T KOG1963|consen 355 PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDE-----NYS-------------------------------------- 391 (792)
T ss_pred CCCCceeecCCCceEEEEeccccceeeeEEEEee-----ccc--------------------------------------
Confidence 5 45677788889999999877665544321000 000
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--------CCC--cEEEEeCCCCceEEE-
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--------FDK--SIKLWNGTTGKFVAV- 397 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--------~Dg--~i~lwd~~~~~~~~~- 397 (500)
..|+ .+...+++++.+-.|.+++|.- .|| .++.|.......-..
T Consensus 392 -------~~~~------------------n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L 446 (792)
T KOG1963|consen 392 -------DGDV------------------NIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL 446 (792)
T ss_pred -------CCcc------------------eeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE
Confidence 0000 1122355666666677777653 222 467776543322111
Q ss_pred ----EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCcc----------
Q 010816 398 ----FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQK---------- 462 (500)
Q Consensus 398 ----~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~~---------- 462 (500)
..-|...+.... ..++... .+++++.||.++||-+...+
T Consensus 447 ~T~I~~PH~~~~vat~--------------------------~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~ 500 (792)
T KOG1963|consen 447 NTKINNPHGNAFVATI--------------------------FLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWT 500 (792)
T ss_pred EEEEecCCCceeEEEE--------------------------EecCcccceeEEeccCCeEEEEEEecccccCcCccceE
Confidence 112332222111 1233333 89999999999999874322
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+...-.-|+..+.+++|+.|| .+.++|.|++|.+|+
T Consensus 501 c~~i~sy~k~~i~a~~fs~dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 501 CKAIGSYHKTPITALCFSQDG-SLLAVSFDDTITIWD 536 (792)
T ss_pred EeeeeccccCcccchhhcCCC-cEEEEecCCEEEEec
Confidence 222222378889999999999 567788889999997
No 193
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.72 E-value=3e-15 Score=126.96 Aligned_cols=276 Identities=18% Similarity=0.278 Sum_probs=193.4
Q ss_pred CEEEEEEcC--C-CCEEEEEeC----CCeEEEEeC--CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 152 WVLCIAWSA--D-GKHLVSGSK----AGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 152 ~v~~v~~s~--~-~~~l~s~~~----d~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
++.++.|+. + ..+||.|+. .++|.+-.+ .+++........|..+++.+.|.|.........+++++ ..+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~L 123 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFL 123 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeE
Confidence 466777773 2 346777774 356666543 44444433345788899999999865444445565544 479
Q ss_pred EEEECCCC--eE--EEEe-----cCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCe---eEEEeecCCceEEEEE
Q 010816 223 RIWDVSLR--KC--VICL-----SGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGK---LIRELKGHGHWVNSLA 288 (500)
Q Consensus 223 ~iwd~~~~--~~--~~~~-----~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~---~~~~~~~~~~~v~~~~ 288 (500)
|+|.+... +. ...+ ..+..++++..|+. ..+|.+.+-|-+..+||+.+|. ...++..|...|..++
T Consensus 124 RlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 124 RLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIA 203 (364)
T ss_pred EEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEE
Confidence 99988632 11 1111 24567899999974 3578899999999999999873 3456788999999999
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--ccCcEEEE
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--HQQLVNHV 366 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~--h~~~v~~l 366 (500)
|.... .+.|++.+.||.+++||++..........+ .......+
T Consensus 204 f~~~s-----------------------------------~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL 248 (364)
T KOG0290|consen 204 FLKGS-----------------------------------RDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL 248 (364)
T ss_pred eccCc-----------------------------------cceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence 87531 357999999999999998764433222222 13467789
Q ss_pred EECC-CCCEEEEEeCC-CcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CC
Q 010816 367 YFSP-DGQWVASASFD-KSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SR 442 (500)
Q Consensus 367 ~~sp-~g~~lasgs~D-g~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~ 442 (500)
+|++ |-+++|+-..| ..|.|.|++. ...+..+++|.+.|+.+ +|.|. ..
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgI---------------------------aWaPhS~~ 301 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGI---------------------------AWAPHSSS 301 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccce---------------------------EecCCCCc
Confidence 9998 45788876665 4699999886 56688999999999888 56665 46
Q ss_pred EEEEEECCCcEEEEECCCccc------cccccCcccCEEEEEEcC-CCCEEEEEeCC
Q 010816 443 LLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSP-DGEKVASGGKD 492 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D 492 (500)
.|++++.|..+-+||+..--. +-... -.++|..+.|++ .+.+|+.+...
T Consensus 302 hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 302 HICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred eeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEecC
Confidence 899999999999999975221 11111 246899999995 46788887654
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=1.5e-14 Score=136.68 Aligned_cols=275 Identities=15% Similarity=0.204 Sum_probs=160.7
Q ss_pred EEEeCCCcEEEEeCCC-Cc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCC-CCCcccccccCcccceEE
Q 010816 124 ASGSGDTTVRLWDLNT-QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ-TGKPSGNPLSGHKKWITG 198 (500)
Q Consensus 124 at~~~d~~i~iwd~~~-~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~v~~ 198 (500)
++...|+.|.+||+.+ ++ .+..+. +.+....++++|++++|++++ .++.|.+|++. +++...............
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceE
Confidence 3446789999999964 32 223332 345677899999999987764 47889999986 333211000011122345
Q ss_pred EEeeeeecCCCCceEEEEe-CCCcEEEEECCCC----eEEEEecCccccEEEEEeCCCC-eE-EEEeCCCeEEEEeCCCC
Q 010816 199 ISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLR----KCVICLSGHTLAVTCVKWGGDG-VI-YTGSQDCTIKVWETTQG 271 (500)
Q Consensus 199 ~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~-~l-~t~~~dg~i~lwd~~~~ 271 (500)
+.++| +++.+++++ .++.|.+|++.+. +.+..+.+ .....++.+++++ .+ ++...++.|.+||+.+.
T Consensus 85 i~~~~-----~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 85 ISTDH-----QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred EEECC-----CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 55554 445565554 4889999998642 12222222 2334567788876 34 34556788999987642
Q ss_pred eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816 272 KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (500)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~ 351 (500)
..+...... .+
T Consensus 159 g~l~~~~~~-----------------------------------------------------------~~---------- 169 (330)
T PRK11028 159 GHLVAQEPA-----------------------------------------------------------EV---------- 169 (330)
T ss_pred CcccccCCC-----------------------------------------------------------ce----------
Confidence 211100000 00
Q ss_pred CceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCC--Cce--EEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 352 PKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 352 ~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~--~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
.... ......++|+|+|++++++.. ++.|.+|++.. ++. +..+..+ |...
T Consensus 170 --~~~~--g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-----------------p~~~---- 224 (330)
T PRK11028 170 --TTVE--GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-----------------PADF---- 224 (330)
T ss_pred --ecCC--CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-----------------CCcC----
Confidence 0000 112456899999999988776 89999999873 322 2221111 0000
Q ss_pred eccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccccccccCcc---cCEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHA---DEVFAVDWSPDGEKVASGGK-DRVLKLWM 499 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~---~~V~~l~~s~dg~~l~s~~~-D~~v~iW~ 499 (500)
........+.++|+|++|+++.. ++.|.+|++........+.+|. .....+.|+|||++|+++.. +++|.+|.
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence 00011122467999999998854 7899999986533211122221 13357899999999998775 89999985
No 195
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.72 E-value=5.5e-15 Score=127.52 Aligned_cols=329 Identities=19% Similarity=0.273 Sum_probs=198.2
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816 156 IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 156 v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 235 (500)
.+|||+|+++|+++.- .+.+=|.++-+... +..--+.|.-+-|.. ..+..+.....|+.|.+|++....-.-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q--lf~cldki~yieW~a----ds~~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQ--LFLCLDKIVYIEWKA----DSCHILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHH--HHHHHHHhhheeeec----cceeeeeeeeccceEEEEEeecceeEEE
Confidence 5799999999999866 67777766543211 001123445566653 2344566778899999999987665555
Q ss_pred ecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816 236 LSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (500)
Q Consensus 236 ~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (500)
+.....++.++.|+||| .|.+...|-.|.+|.+.+.+.. .++.....+..+++++++.+........-..+......
T Consensus 87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c 165 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSC 165 (447)
T ss_pred eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHHHHHhh
Confidence 66667889999999998 4677889999999999875543 23334445677888887654433222211111111100
Q ss_pred HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc-CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
+.-.+.+........-.-+-.+-++..+.+||....-. ...-|. -.+..++|+|.+++||.|+.|+.+|+.+--+.
T Consensus 166 ~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leyk---v~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW 242 (447)
T KOG4497|consen 166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYK---VYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW 242 (447)
T ss_pred HHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhe---eeeeeeccceeEEEeccccceEEeeccchhhhhhceeee
Confidence 00001010001000001122234455678898532221 111122 35788999999999999999999999775443
Q ss_pred ceEEEE------------------------------------eCCcccEEEEEeeee------eeecCCCCceeeeeccc
Q 010816 393 KFVAVF------------------------------------RGHVGPVYQIRFELI------YCFRYPSNFYCVVDMSC 430 (500)
Q Consensus 393 ~~~~~~------------------------------------~~h~~~v~~~~~~~~------~~~~~~~~~~~~~~~~~ 430 (500)
+....| ..|..+.....++.. ...+.+.. ..+-.+
T Consensus 243 k~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD---~pnPk~ 319 (447)
T KOG4497|consen 243 KPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTD---FPNPKC 319 (447)
T ss_pred eehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCC---CCCccc
Confidence 322211 111111111111100 00011111 112246
Q ss_pred cceeeEEcCCCCEEEEEEC--CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 431 CMSLYSWSADSRLLLSGSK--DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 431 ~~~~~~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++..++||+|..++++-.. -+.+-+||++..++...+. ....|.+..|+|...+|+.+....++++|.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 6788999999999998654 3678999999888766553 356799999999999999998888999994
No 196
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=8.1e-15 Score=146.65 Aligned_cols=321 Identities=21% Similarity=0.286 Sum_probs=199.3
Q ss_pred EecccccccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCCCCEEE
Q 010816 95 RPVNRCSATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLV 166 (500)
Q Consensus 95 ~~~~~~~~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~~~~l~ 166 (500)
++.+...+.|..|...|..++.++.. .+++|||.||+||+||...- +...++.--...+.++.+.+.++.+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 34556778888999999999988765 99999999999999997531 11222323456789999999999999
Q ss_pred EEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEE
Q 010816 167 SGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCV 246 (500)
Q Consensus 167 s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 246 (500)
.++.||.|++.++..-.... +.++ .+++=|....- ..|...
T Consensus 1115 v~t~DG~v~~~~id~~~~~~-------------------------~~~~-----~~ri~n~~~~g---------~vv~m~ 1155 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSK-------------------------RVAT-----QVRIPNLKKDG---------VVVSMH 1155 (1431)
T ss_pred EEcCCCeEEEEEcccccccc-------------------------ceee-----eeecccccCCC---------ceEEee
Confidence 99999999998875321000 0000 01111111111 112222
Q ss_pred EeCC--C-CeEEEEeCCCeEEEEeCCCCeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 247 KWGG--D-GVIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 247 ~~~~--~-~~l~t~~~dg~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+|.. . ..++.+..-+.|..||.++......++ ...+.|+++++++.
T Consensus 1156 a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~----------------------------- 1206 (1431)
T KOG1240|consen 1156 AFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPW----------------------------- 1206 (1431)
T ss_pred cccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCC-----------------------------
Confidence 2221 1 146667788899999998765554443 23346778877764
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC---CEEEEEe--CCCcEEEEeCCCCceEE
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG---QWVASAS--FDKSIKLWNGTTGKFVA 396 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g---~~lasgs--~Dg~i~lwd~~~~~~~~ 396 (500)
+..++.|...|.+.+||++.......--.++..+++.|..+|-. ...++++ ..+.|.+|+..+|.+-.
T Consensus 1207 -------~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~ 1279 (1431)
T KOG1240|consen 1207 -------CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQT 1279 (1431)
T ss_pred -------ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceE
Confidence 34789999999999999986554433344556788888877632 3444444 46789999999997766
Q ss_pred EEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc-----------
Q 010816 397 VFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK----------- 464 (500)
Q Consensus 397 ~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~----------- 464 (500)
++... ..+..+- ..|.+.... ......-...+...+.++.+|+.|..||.||....+..
T Consensus 1280 vl~~s~~~p~ls~--------~~Ps~~~~k-p~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~ 1350 (1431)
T KOG1240|consen 1280 VLWASDGAPILSY--------ALPSNDARK-PDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSY 1350 (1431)
T ss_pred EEEcCCCCcchhh--------hcccccCCC-CCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccc
Confidence 66544 2222111 112110000 00000011123344568999999999999996431100
Q ss_pred -------------------------------------cc--------ccCcccCEEEEEEcCC-CCEEEEEeCCCcEEEe
Q 010816 465 -------------------------------------QD--------LPGHADEVFAVDWSPD-GEKVASGGKDRVLKLW 498 (500)
Q Consensus 465 -------------------------------------~~--------~~~h~~~V~~l~~s~d-g~~l~s~~~D~~v~iW 498 (500)
.. -..|.+.|+++++-.. ...|++++.||.|+||
T Consensus 1351 ~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1351 STNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 00 0136667777765333 4588999999999999
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
.
T Consensus 1431 k 1431 (1431)
T KOG1240|consen 1431 K 1431 (1431)
T ss_pred C
Confidence 5
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=1.9e-15 Score=147.19 Aligned_cols=233 Identities=22% Similarity=0.264 Sum_probs=156.4
Q ss_pred CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCccc-ccccCcccceEEEEeeee
Q 010816 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSG-NPLSGHKKWITGISWEPV 204 (500)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~~ 204 (500)
+..|++||..... ...+..|...+.+..|+|||+.|+.++.+ ..|.+||+.+++... ....+| ...+.|+|
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSP- 257 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSP- 257 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECC-
Confidence 5789999987655 34566788889999999999999987754 369999998875321 112333 33567776
Q ss_pred ecCCCCceEEEE-eCCCcEEEE--ECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeec
Q 010816 205 HLNAPCRRFVSA-SKDGDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 205 ~~~~~~~~~~s~-s~dg~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
++++++.+ +.+|.+.|| |+..+.. ..+..+...+.+..|++|+. |+ ++..++..++|++.....
T Consensus 258 ----DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~------ 326 (429)
T PRK01742 258 ----DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG------ 326 (429)
T ss_pred ----CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC------
Confidence 45566665 467876655 6555543 34455666677889999874 44 444567777776432100
Q ss_pred CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h 359 (500)
.. ..+ ++
T Consensus 327 ------------------------------------------------------------~~------------~~l-~~ 333 (429)
T PRK01742 327 ------------------------------------------------------------GA------------SLV-GG 333 (429)
T ss_pred ------------------------------------------------------------Ce------------EEe-cC
Confidence 00 000 11
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (500)
.. ....|+|||++|+..+.++ +.+||+.+++.......+.. ...+|+|
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~~~-----------------------------~~~~~sP 381 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTFLD-----------------------------ESPSISP 381 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCCCC-----------------------------CCceECC
Confidence 11 2357899999998887765 55699988765422111100 1126899
Q ss_pred CCCEEEEEECCCcEEEEEC--CCccccccccCcccCEEEEEEcCC
Q 010816 440 DSRLLLSGSKDSTLKVWDI--RTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~--~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
+|++|+.++.++.+++|++ ..++..+.+.+|.+.+..++|||-
T Consensus 382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 9999999999999988875 357777888888888999999984
No 198
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=5.5e-15 Score=135.37 Aligned_cols=260 Identities=19% Similarity=0.345 Sum_probs=176.6
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-eEEecCCCCCEEEEEE--------cCCCCEEEEEeCCCeEEE
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-MFKCTGHKNWVLCIAW--------SADGKHLVSGSKAGELQC 176 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~--------s~~~~~l~s~~~d~~i~~ 176 (500)
-|+..|-|+.|+.+...+.+++.+..++-||+.+... +..+ ....|....+ -...+.++.++.||.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~--p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~i 89 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL--PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVI 89 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC--CcccCCccccccccccCCCCCcceEEEEcCCceEEE
Confidence 4677778999998888777777666666666643211 1111 1111111000 012357888899999998
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eE
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VI 254 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l 254 (500)
-+- .++. .....+|.+.+.+-.|+| ++.-+++++.||.|++|.- +|-...++.....+|.|++|.|+. .+
T Consensus 90 l~k-~~rV-E~sv~AH~~A~~~gRW~~-----dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 90 LNK-SARV-ERSISAHAAAISSGRWSP-----DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIV 161 (737)
T ss_pred ecc-cchh-hhhhhhhhhhhhhcccCC-----CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceE
Confidence 864 3332 345788999999999987 4457999999999999973 343333344556789999999875 34
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++.+ +.+.+=-+.....+-..+.|..-|.++.+++. .+.+++
T Consensus 162 ~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~------------------------------------s~lI~s 203 (737)
T KOG1524|consen 162 FCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQ------------------------------------SNIIAS 203 (737)
T ss_pred EecC--CeEEEeecccccceeEEeccCcEEEEeecCcc------------------------------------ccceee
Confidence 4433 45555455544445556789999999988764 357899
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
|+.|...++||.. ..+......|..+|++++|+|+ ..++.+|.. ++|+=.. ..+.|..+
T Consensus 204 gGED~kfKvWD~~--G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~p-----------~~GSifnl------ 262 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQ--GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TARFSSP-----------RVGSIFNL------ 262 (737)
T ss_pred cCCceeEEeeccc--CcccccCChhccceeeeeeccc-cceeeeeee-eeeecCC-----------CccceEEE------
Confidence 9999999999954 2344455678899999999999 777777664 3442222 22334443
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i 455 (500)
+||+||.+++.|...|.+.+
T Consensus 263 ---------------------sWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 263 ---------------------SWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---------------------EEcCCCceeeccccCceEEE
Confidence 79999999999999887654
No 199
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6.1e-14 Score=136.25 Aligned_cols=318 Identities=17% Similarity=0.214 Sum_probs=206.3
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG---KHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~---~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
-.|++|+++++... +..|+||...++.++..+.+|..++..+.+.|.. .++.+++.||.|++||...+...+....
T Consensus 22 avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 35899999887765 4589999999999999999999999999998864 4677999999999999988865442211
Q ss_pred CcccceEEEEeeeeecCCC---------CceEEEEeCC--CcEEEEECCCC--eEEEEecCccccEEEEEeCCCCeEEEE
Q 010816 191 GHKKWITGISWEPVHLNAP---------CRRFVSASKD--GDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDGVIYTG 257 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~---------~~~~~s~s~d--g~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~l~t~ 257 (500)
...+..+.+.|.....+ ...+.+.+.+ ++++=+.+.+. .....+.+|.. -.++.+++.+.+...
T Consensus 101 --~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 101 --NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI 177 (792)
T ss_pred --CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence 12222332222111100 0011111111 11111111110 00001112222 235666777777777
Q ss_pred eCCCeEEEEeCCCCeeEEE----eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 258 SQDCTIKVWETTQGKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
..+..+.+|+......... -..|.-.+++.+++|. +..++
T Consensus 178 ~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn------------------------------------~~~~A 221 (792)
T KOG1963|consen 178 VHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN------------------------------------ERYLA 221 (792)
T ss_pred EEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc------------------------------------cceEE
Confidence 7778888888776441110 1123333556666553 45788
Q ss_pred EeeCCCeEEEEcCCC---CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 334 SGSDDFTMFLWEPAV---SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 334 s~s~d~~v~~wd~~~---~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
+|..||.|.+|.-.. .......+.=|.+.|++++|+++|.+|.+|+..+.+-+|.+.+++. .-+.--.++|..
T Consensus 222 a~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k-qfLPRLgs~I~~--- 297 (792)
T KOG1963|consen 222 AGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK-QFLPRLGSPILH--- 297 (792)
T ss_pred EeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc-ccccccCCeeEE---
Confidence 999999999997433 1223345667889999999999999999999999999999998762 112212233333
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc-----------ccCEEEEEE
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-----------ADEVFAVDW 479 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-----------~~~V~~l~~ 479 (500)
+.+|||+.+.+....|+.|++-...+.+....+.|- .+-.+.+++
T Consensus 298 ------------------------i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~i 353 (792)
T KOG1963|consen 298 ------------------------IVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSI 353 (792)
T ss_pred ------------------------EEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEE
Confidence 367999999999999999999988665544433332 223567889
Q ss_pred cCCCCEEEEEeCCCcEEEec
Q 010816 480 SPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 480 s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|.-+.++-.+.-+.|.+|+
T Consensus 354 dpr~~~~vln~~~g~vQ~yd 373 (792)
T KOG1963|consen 354 DPRTNSLVLNGHPGHVQFYD 373 (792)
T ss_pred cCCCCceeecCCCceEEEEe
Confidence 99777888899999998876
No 200
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=6.6e-17 Score=155.05 Aligned_cols=235 Identities=26% Similarity=0.439 Sum_probs=183.3
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVW 266 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lw 266 (500)
.+.+|...|.++.|.. .|+++++|+.|..++||...+..|+....||.+.|+.++.+.++. +++++.|..|++|
T Consensus 185 rLlgH~naVyca~fDr-----tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDR-----TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHhhhhheeeeeecc-----ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence 3568888888888754 568999999999999999999999999999999999999987764 7789999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
.++++..+..+.+|...|++++++|. .+.+.||++++||.
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~----------------------------------------~sss~dgt~~~wd~ 299 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPR----------------------------------------ASSSDDGTCRIWDA 299 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCcc----------------------------------------ccCCCCCceEeccc
Confidence 99999999999999999999999873 36788999999997
Q ss_pred CCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 347 AVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 347 ~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
+.... +.-......+.+.++-|..++.-++||+.|+.-+.|...-..+ +...+ -|
T Consensus 300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~l---if------------- 357 (1113)
T KOG0644|consen 300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNLL---IF------------- 357 (1113)
T ss_pred cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhh------hccce---EE-------------
Confidence 62211 0000111235577888888999999999999988886543211 11100 00
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE-EEeCCCcEEEec
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM 499 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v~iW~ 499 (500)
.+.. +....+.+++-.+-.+.+|++.++.+...+.+|.+.++.+.++|-+..++ +++.||..-||+
T Consensus 358 -----~t~s-----sd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 358 -----VTRS-----SDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred -----Eecc-----ccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 0000 11124556677777889999999999999999999999999999877665 899999999997
No 201
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.67 E-value=5.1e-15 Score=135.72 Aligned_cols=192 Identities=18% Similarity=0.384 Sum_probs=131.8
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEec----CccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceE
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWV 284 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v 284 (500)
--++.|-.-|.|.+.|.......+.+. -....|+|+.|.+ ++.++.+-.+|.+.+||..-. . . .
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~---~---~----~ 255 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV---C---G----A 255 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc---c---c----C
Confidence 346667777888888865532211111 1246799999975 457888889999999986210 0 0 0
Q ss_pred EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~ 364 (500)
-.|.+. .. ..++.+ .|..|.-.....+.....--+..|+
T Consensus 256 ----t~p~~~-----------~~-------------------k~~~~f-------~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 256 ----TAPSYQ-----------AL-------------------KDGDQF-------AILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred ----CCCccc-----------cc-------------------CCCCee-------EEeeeeccccCCccceeEecccccc
Confidence 000000 00 001111 2222322222244444444456899
Q ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816 365 HVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 444 (500)
..+|+|||++||+.|.||.+||||..+-+++.+++.--+...++ .|||||+++
T Consensus 295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCv---------------------------cWSPDGKyI 347 (636)
T KOG2394|consen 295 EFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCV---------------------------CWSPDGKYI 347 (636)
T ss_pred ceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEE---------------------------EEcCCccEE
Confidence 99999999999999999999999998877776655444444444 799999999
Q ss_pred EEEECCCcEEEEECCCccccccccCcccCEEEEEEc
Q 010816 445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS 480 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 480 (500)
++|+.|-.|.||.+..++++..-.||+..|..|+|.
T Consensus 348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence 999999999999999999999999999999999998
No 202
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=139.77 Aligned_cols=125 Identities=29% Similarity=0.460 Sum_probs=105.1
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
..+.||++.|.|+.|+.||.+|+|||.|-.+.|||+-..+.....-.+|.+.|.++.|.|... .+.+++|+.|..|+
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tn---nriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTN---NRIVLSGAGDKLIK 120 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCC---CeEEEeccCcceEE
Confidence 357799999999999999999999999999999999877766666789999999999998643 46899999999999
Q ss_pred EEECCCC----------eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCC
Q 010816 224 IWDVSLR----------KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG 271 (500)
Q Consensus 224 iwd~~~~----------~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~ 271 (500)
++|+... .......-|...|-.++-.+++ .+.+++.||+|+-+|++..
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 9999742 2334455677777777777655 7999999999999999864
No 203
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1e-13 Score=121.72 Aligned_cols=224 Identities=15% Similarity=0.225 Sum_probs=154.1
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC--CCeEEEEeCCCCeeEEEeecCCceE
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWV 284 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~--dg~i~lwd~~~~~~~~~~~~~~~~v 284 (500)
++++..+..|+.|| -+++.................|--.-|+.. .++..+. -+.+++.+...+..+..+.. ...|
T Consensus 14 Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSS-LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-pt~I 90 (391)
T KOG2110|consen 14 NQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSS-LVAIVSIKQPRKLKVVHFKKKTTICEIFF-PTSI 90 (391)
T ss_pred ccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccc-eeEEEecCCCceEEEEEcccCceEEEEec-CCce
Confidence 34445566677776 467766543221111112233444556654 4333333 34588888887776665542 2345
Q ss_pred EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee--eecccCc
Q 010816 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR--MTGHQQL 362 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~--~~~h~~~ 362 (500)
.++.+. ..+++..-.+. |+++|+...+..... ...+...
T Consensus 91 L~VrmN--------------------------------------r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 91 LAVRMN--------------------------------------RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred EEEEEc--------------------------------------cceEEEEEccc-EEEEecccceeehhhhccCCCccc
Confidence 555443 23566555544 999998765433222 2245566
Q ss_pred EEEEEECCCCCEEEEEe--CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 363 VNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
+.++++++.+.+||-=+ .-|.|.+||..+.+.+..+.+|.+++.++ +|+++
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAal---------------------------afs~~ 184 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAAL---------------------------AFSPD 184 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEE---------------------------EECCC
Confidence 77777777778888532 35899999999999999999999999887 56999
Q ss_pred CCEEEEEECCCc-EEEEECCCccccccccCcc--cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 441 SRLLLSGSKDST-LKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 441 ~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|.+||+||..|+ ||||.+..++.+..++-.. ..|++++|+||+++|++.|..++|+|+.
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 999999999986 6999999998887765432 3689999999999999999999999985
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.63 E-value=3.2e-14 Score=122.53 Aligned_cols=232 Identities=19% Similarity=0.296 Sum_probs=163.2
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-C
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-K 183 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~-~ 183 (500)
.++|+|.+|++|+..+|.+-....|.||...... +.+.++.|...|+.|+|+|.++.|++|+.|..-.+|....+ +
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 4689999999999999999999999999887654 56788899999999999999999999999999999988433 3
Q ss_pred ccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE----EEecCccccEEEEEeCCCCe-EEEE
Q 010816 184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV----ICLSGHTLAVTCVKWGGDGV-IYTG 257 (500)
Q Consensus 184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-l~t~ 257 (500)
-.. ..+..++...+++.|.|.. .+|++||..+.|.||-.+...-- ..-+.+...|++++|.+++. +++|
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~e-----nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKE-----NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred eccceeEEEeccceeeEeecCcC-----ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 211 1245678889999999854 58999999999999987644321 11234567899999999985 6678
Q ss_pred eCCCeEEEEeCC------------------CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 258 SQDCTIKVWETT------------------QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 258 ~~dg~i~lwd~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
+.|+..|+|..- -|.++.++.....++..+.+++
T Consensus 165 s~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~---------------------------- 216 (361)
T KOG1523|consen 165 STDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP---------------------------- 216 (361)
T ss_pred ccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC----------------------------
Confidence 899999999631 0111112222333444444433
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
.++.++--+.|.++.+=|.....+.......-+-+..++.|-.+. .++.+++|
T Consensus 217 --------sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 217 --------SGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred --------CCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCC
Confidence 256788888899998888655432222222222455566664433 34555555
No 205
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.9e-13 Score=113.31 Aligned_cols=237 Identities=19% Similarity=0.290 Sum_probs=148.4
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---------CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQT---------GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
.|.+-+|+|.+++|+.|..+|.|.+..+++ |+..-.+..+|..++..+.|.. +.+++| .||.|
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-------~~Lls~-gdG~V 83 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-------DFLLSG-GDGLV 83 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-------hheeec-cCceE
Confidence 355668899999999999999999998653 2222234578999999998863 234444 55999
Q ss_pred EEEECCCCeE------EEE--ecCcc-----ccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEE
Q 010816 223 RIWDVSLRKC------VIC--LSGHT-----LAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLA 288 (500)
Q Consensus 223 ~iwd~~~~~~------~~~--~~~h~-----~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~ 288 (500)
+=|..+.... +.. ...|. ..|.++...| ++.+++++.|+.++-||+++|+..+++++|...+.++.
T Consensus 84 ~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv 163 (325)
T KOG0649|consen 84 YGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVV 163 (325)
T ss_pred EEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeee
Confidence 9887643211 000 01121 2355665553 45667777888888888888888777777766555543
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF 368 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~ 368 (500)
-
T Consensus 164 -------------------------------------------------------------------------------~ 164 (325)
T KOG0649|consen 164 -------------------------------------------------------------------------------G 164 (325)
T ss_pred -------------------------------------------------------------------------------e
Confidence 2
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448 (500)
Q Consensus 369 sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s 448 (500)
-.....+.+|++||++|+||.++++++.++..-..+- .+ +... ...+. +...+..+|++|+
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~-~l--------Rp~~--------g~wig--ala~~edWlvCGg 225 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN-LL--------RPDW--------GKWIG--ALAVNEDWLVCGG 225 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChh-hc--------Cccc--------CceeE--EEeccCceEEecC
Confidence 1122346788888888888888888777654322110 00 0000 01111 1234667888776
Q ss_pred CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 449 KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 449 ~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
. ...-+|++++-+....++ ...+|-.+.|-. +.++++|.-+-|.-|
T Consensus 226 G-p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 226 G-PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNHVQSY 271 (325)
T ss_pred C-CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccceeee
Confidence 4 458899999888766654 234577788864 356677765555555
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=8.5e-13 Score=116.07 Aligned_cols=237 Identities=18% Similarity=0.257 Sum_probs=155.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCcc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPS 185 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~ 185 (500)
...+..+.|+.+...|..|+.|| .+++..+............-.|..+-|+. .++|..+.+ ..+++.+.+.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCceE
Confidence 34567777999999999999887 67887765444332222334566677765 456555544 45888888766544
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---ccccEEEEEeCCCC-eEEE-EeCC
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYT-GSQD 260 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~t-~~~d 260 (500)
..... ...|.++.++. ++++.+=.+. |.|||++..+.+.++.. +...+.++..+.++ +++- ++.
T Consensus 82 Ce~~f--pt~IL~VrmNr-------~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~- 150 (391)
T KOG2110|consen 82 CEIFF--PTSILAVRMNR-------KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST- 150 (391)
T ss_pred EEEec--CCceEEEEEcc-------ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-
Confidence 32221 23455555432 4677665554 99999999887765532 33334444444332 2221 111
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
..|.
T Consensus 151 ----------------------------------------------------------------------------t~Gd 154 (391)
T KOG2110|consen 151 ----------------------------------------------------------------------------TSGD 154 (391)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 1344
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~-i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
|.+||... -.+...+..|.+.+.+++|+++|.+|||+|.-|+ |||+.+.+|+.+..|+--..++
T Consensus 155 V~l~d~~n-l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~-------------- 219 (391)
T KOG2110|consen 155 VVLFDTIN-LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPV-------------- 219 (391)
T ss_pred EEEEEccc-ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceee--------------
Confidence 55555432 2334556689999999999999999999999886 7999999999887775321111
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
.+..++|+|++++|++.|..++|++|.++.
T Consensus 220 -----------~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 220 -----------SIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred -----------EEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 123347899999999999999999998864
No 207
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.61 E-value=1.8e-13 Score=118.03 Aligned_cols=250 Identities=22% Similarity=0.331 Sum_probs=168.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (500)
Q Consensus 149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd 226 (500)
-..+|+|.+|++|...+|.+.....|.||...... .....+..|...|+++.|.|.. .++++|+.|+.-++|.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-----nrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-----NRIVTCSHDRNAYVWT 83 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-----CceeEccCCCCccccc
Confidence 35689999999999999999999999999877655 2345678899999999999854 4899999999999999
Q ss_pred CCCC---eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 227 VSLR---KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 227 ~~~~---~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
...+ +....+..++...+++.|+|.+ .+++|+....|.||-++... .|
T Consensus 84 ~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~EN---------dW------------------- 135 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEN---------DW------------------- 135 (361)
T ss_pred cCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEeccc---------ce-------------------
Confidence 8433 3455667788999999999865 68888888888887543210 00
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK 382 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg 382 (500)
|= . +..-..+...|++++|+|++-+||.||.|+
T Consensus 136 -----------------------------------------WV---s---KhikkPirStv~sldWhpnnVLlaaGs~D~ 168 (361)
T KOG1523|consen 136 -----------------------------------------WV---S---KHIKKPIRSTVTSLDWHPNNVLLAAGSTDG 168 (361)
T ss_pred -----------------------------------------eh---h---hhhCCccccceeeeeccCCcceecccccCc
Confidence 00 0 011123456799999999999999999999
Q ss_pred cEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeecCCCCceeee-eccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 383 SIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFRYPSNFYCVV-DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
..|++..- ++.... ....-..+.|..+ .... .....+..+.|+|+|..|+-.+.|..|.+=|.
T Consensus 169 k~rVfSay----IK~Vdekpap~pWgsk~PFG~l---------m~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da 235 (361)
T KOG1523|consen 169 KCRVFSAY----IKGVDEKPAPTPWGSKMPFGQL---------MSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDA 235 (361)
T ss_pred ceeEEEEe----eeccccCCCCCCCccCCcHHHH---------HHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeec
Confidence 99999632 110000 0000001111000 0000 11223444578999999999999999999987
Q ss_pred CCcc-ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 459 RTQK-LKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 459 ~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
.... ....+..-.-+..++.|-.+ +.++.+|.|
T Consensus 236 ~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 236 AGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred CCCchhccchhhccCCceeeEeecC-CceeecCCC
Confidence 7654 22222222245567777554 344555555
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2e-13 Score=122.09 Aligned_cols=196 Identities=22% Similarity=0.255 Sum_probs=138.3
Q ss_pred EEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 244 TCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 244 ~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
.+++|+.+| .+++|+.||++|+|+.++-..+.....|...|.++.++++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg----------------------------- 198 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG----------------------------- 198 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-----------------------------
Confidence 568888884 68899999999999988777777777788899999999873
Q ss_pred hhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCC-----CEEEEEeCCCcEEEEeCCCCceEE
Q 010816 323 KIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDG-----QWVASASFDKSIKLWNGTTGKFVA 396 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g-----~~lasgs~Dg~i~lwd~~~~~~~~ 396 (500)
..+++-+.| ..++|+..........- .+.......+.|+.|+ ..++.-..-+.|+.||+....--.
T Consensus 199 -------k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 199 -------KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred -------cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 467888888 89999987653222111 2233445667888776 333444445677777754321100
Q ss_pred EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCcccCEE
Q 010816 397 VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVF 475 (500)
Q Consensus 397 ~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~ 475 (500)
.++.. ........++.++.|++|+++|.|+.||.|-|++..+.+..+. -..|..-|+
T Consensus 271 ~l~~~----------------------~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT 328 (398)
T KOG0771|consen 271 FLRLR----------------------KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVT 328 (398)
T ss_pred ccchh----------------------hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeee
Confidence 00000 0001112344557799999999999999999999988766543 346989999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEe
Q 010816 476 AVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 476 ~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.|.|+||.+++++.+.|.+.++-
T Consensus 329 ~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred eEEEcCCcCcccccccCCceeEE
Confidence 99999999999999999887764
No 209
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=5.3e-12 Score=109.01 Aligned_cols=236 Identities=19% Similarity=0.297 Sum_probs=153.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc--ccccCcccceEEEEeeeeecCCCCceEE-EEeCC------CcE
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG--NPLSGHKKWITGISWEPVHLNAPCRRFV-SASKD------GDA 222 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~-s~s~d------g~v 222 (500)
...+++|+.|..-++.|..+| .++|+.+--+... +...+. -.+..+-| .++.++ .||.+ ..|
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G-~~~veMLf-------R~N~laLVGGg~~pky~pNkv 77 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGG-FKIVEMLF-------RSNYLALVGGGSRPKYPPNKV 77 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCc-hhhhhHhh-------hhceEEEecCCCCCCCCCceE
Confidence 345699999988887776554 7888875322110 001110 11111111 122332 34333 479
Q ss_pred EEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
.|||-...+++.++. -..+|.++.+..+..++ -..+.|.||... +.+.++.+.....+---++..+..
T Consensus 78 iIWDD~k~~~i~el~-f~~~I~~V~l~r~riVv--vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~-------- 146 (346)
T KOG2111|consen 78 IIWDDLKERCIIELS-FNSEIKAVKLRRDRIVV--VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS-------- 146 (346)
T ss_pred EEEecccCcEEEEEE-eccceeeEEEcCCeEEE--EecCeEEEEEcCCChhheeeeecccCCCceEeecCCC--------
Confidence 999977777777653 46789999988775433 346789999887 445555443221111111111110
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCCC-CceeeecccCcEEEEEECCCCCEEEEEe
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSKQ-PKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs 379 (500)
....++ -|-.-|.|.+-|+..... +.....+|...|.|++.+-+|.++||+|
T Consensus 147 --------------------------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 147 --------------------------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS 200 (346)
T ss_pred --------------------------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec
Confidence 011222 244568899988765443 4567889999999999999999999999
Q ss_pred CCCc-EEEEeCCCCceEEEEeC--CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816 380 FDKS-IKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 380 ~Dg~-i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw 456 (500)
..|+ |||||..+|+.+..++- ....++++ +|||+..+||++|.-|+++||
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~i---------------------------aFSp~~s~LavsSdKgTlHiF 253 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCI---------------------------AFSPNSSWLAVSSDKGTLHIF 253 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEE---------------------------EeCCCccEEEEEcCCCeEEEE
Confidence 9986 79999999999887753 23456666 679999999999999999999
Q ss_pred ECCC
Q 010816 457 DIRT 460 (500)
Q Consensus 457 d~~~ 460 (500)
.++.
T Consensus 254 ~l~~ 257 (346)
T KOG2111|consen 254 SLRD 257 (346)
T ss_pred Eeec
Confidence 9875
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=1.2e-13 Score=134.58 Aligned_cols=208 Identities=18% Similarity=0.187 Sum_probs=134.9
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCee--EEEeecCCceEEEEEecCc
Q 010816 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTE 292 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~ 292 (500)
+..|++||..... ...+..|...+.+..|+|||. |+.++.+ ..|++||+.+++. +..+.++ ...++++|+
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986544 445667778899999999984 5555443 4699999988753 2222222 224555554
Q ss_pred ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (500)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~ 371 (500)
+..++.+ +.++.+.||...........+..+...+....|+||
T Consensus 259 ------------------------------------G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpD 302 (429)
T PRK01742 259 ------------------------------------GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPD 302 (429)
T ss_pred ------------------------------------CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCC
Confidence 3345554 467766655432222234456667777889999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 372 GQWVASAS-FDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 372 g~~lasgs-~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
|+.|+..+ .+|..+||++... .....+ ++.+ + ..+|+|+|++|+.++.
T Consensus 303 G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~---------------------------~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 303 GQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--Y---------------------------SAQISADGKTLVMING 352 (429)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--C---------------------------CccCCCCCCEEEEEcC
Confidence 99877655 5788888876432 111111 1111 1 1257999999998887
Q ss_pred CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 450 DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 450 d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++ +.+||+.+++.......+ ....++|+|||+.|+.++.++.+++|.
T Consensus 353 ~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~ 399 (429)
T PRK01742 353 DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQ 399 (429)
T ss_pred CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEE
Confidence 66 555999887654322222 235678999999999999999888774
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=5.3e-13 Score=118.12 Aligned_cols=262 Identities=16% Similarity=0.268 Sum_probs=172.2
Q ss_pred CCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 151 NWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 151 ~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
..|..+.|.-++ ..|..++.|-.+............. ......+.|.++. .....+++|-.+|.+.
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~-------~~dg~Litc~~sG~l~ 128 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLK-------LADGTLITCVSSGNLQ 128 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchh-------hcCCEEEEEecCCcEE
Confidence 345666665443 3444444555555555443332211 1112223333332 2235789999999999
Q ss_pred EEECCCCe----EEEEecCccccEEEEEeCC--CCeEEEEeCC--CeEEEEeCCCCeeEEEeecCC---------ceEEE
Q 010816 224 IWDVSLRK----CVICLSGHTLAVTCVKWGG--DGVIYTGSQD--CTIKVWETTQGKLIRELKGHG---------HWVNS 286 (500)
Q Consensus 224 iwd~~~~~----~~~~~~~h~~~v~~~~~~~--~~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~~---------~~v~~ 286 (500)
+|....+. .+..+.-+ ..+..+.-.+ .+++++|+.. ..+++||+.+.+.+.+.+.-. -|+..
T Consensus 129 ~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 129 VRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 99987432 11112111 2233332222 2467779988 899999999875554433211 12222
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l 366 (500)
+.|- .+.+...|+++..-+.+++||.+....|...+.-....++++
T Consensus 208 i~Fl----------------------------------~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~ 253 (412)
T KOG3881|consen 208 IRFL----------------------------------EGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISST 253 (412)
T ss_pred ceec----------------------------------CCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceee
Confidence 2221 222356799999999999999998888888887778899999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816 367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 445 (500)
...|+|+++.+|..-|.+..||.+.++.... +++-.+.+.++.. +|...+||
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~---------------------------hp~~~~la 306 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC---------------------------HPTHPVLA 306 (412)
T ss_pred eecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE---------------------------cCCCceEE
Confidence 9999999999999999999999999998876 8888888887743 78889999
Q ss_pred EEECCCcEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816 446 SGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 446 s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
+++.|..|||+|+++.+++... --....+.+-+.++
T Consensus 307 s~GLDRyvRIhD~ktrkll~kv-YvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 307 SCGLDRYVRIHDIKTRKLLHKV-YVKSRLTFILLRDD 342 (412)
T ss_pred eeccceeEEEeecccchhhhhh-hhhccccEEEecCC
Confidence 9999999999999996654321 11234555555443
No 212
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.58 E-value=7e-15 Score=132.51 Aligned_cols=267 Identities=17% Similarity=0.294 Sum_probs=181.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
.-.-..+.|+.+|.+|+.|+.-|.|..+|+.+++..... .-...|..+.|... ..|++.....-+.||| ..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei--~v~Etv~Dv~~LHn------eq~~AVAQK~y~yvYD-~~ 199 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI--NVMETVRDVTFLHN------EQFFAVAQKKYVYVYD-NN 199 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee--ehhhhhhhhhhhcc------hHHHHhhhhceEEEec-CC
Confidence 444577899999999999999999999999988754321 12334556666432 2456666778899998 45
Q ss_pred CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
|..+.+++.| ..|..+.|-|..+ |++++..|.++.-|+.+|+.+..+......+..+...|-
T Consensus 200 GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~---------------- 262 (545)
T KOG1272|consen 200 GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPY---------------- 262 (545)
T ss_pred CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCc----------------
Confidence 6666666554 4677888888764 667888899999999999988776544444433333221
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
...+-.|...|+|.+|.+.. ..+...+..|...|.++++.++|+++||.+.|+.++|||
T Consensus 263 --------------------NaVih~GhsnGtVSlWSP~s-kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 263 --------------------NAVIHLGHSNGTVSLWSPNS-KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred --------------------cceEEEcCCCceEEecCCCC-cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 23466788999999999764 455667789999999999999999999999999999999
Q ss_pred CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-Cc--cccc
Q 010816 389 GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR-TQ--KLKQ 465 (500)
Q Consensus 389 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~-~~--~~~~ 465 (500)
++.-..+.++.. ..+... +++|. +-+++.|....|.||.-. .+ ....
T Consensus 322 lR~~~ql~t~~t-p~~a~~---------------------------ls~Sq--kglLA~~~G~~v~iw~d~~~~s~~~~~ 371 (545)
T KOG1272|consen 322 LRNFYQLHTYRT-PHPASN---------------------------LSLSQ--KGLLALSYGDHVQIWKDALKGSGHGET 371 (545)
T ss_pred eccccccceeec-CCCccc---------------------------ccccc--ccceeeecCCeeeeehhhhcCCCCCCc
Confidence 987665544432 111111 13333 345556666679999522 11 1111
Q ss_pred cccCc--ccCEEEEEEcCCCCEEEEEeCCC
Q 010816 466 DLPGH--ADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 466 ~~~~h--~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
....| .+.|..|.|-|-+..|..|..-|
T Consensus 372 pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 372 PYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred chhhhccCcccccceeccHHHeeeccccCC
Confidence 11122 23788888888766666555444
No 213
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.58 E-value=5.1e-12 Score=119.41 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=97.9
Q ss_pred ccEEEEEEcCCCCeEEEEe-CCCcEEEEeCCC-Ccee-EEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCc
Q 010816 109 EAVLSVAFSPDGRQLASGS-GDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKP 184 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~-~d~~i~iwd~~~-~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~~~~ 184 (500)
+....++++|++++|+.++ .++.|.+|++.. +... .......+....+.|+|++++|++++. ++.|.+|++++...
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~ 114 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI 114 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence 4566789999999987765 588999999863 3221 111112335678999999999988775 78999999864221
Q ss_pred ccccc--cCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEE-------EecCccccEEEEEeCCCCe-
Q 010816 185 SGNPL--SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVI-------CLSGHTLAVTCVKWGGDGV- 253 (500)
Q Consensus 185 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~-------~~~~h~~~v~~~~~~~~~~- 253 (500)
..... ..+.....++.+.| +++.+ ++...++.|.+||+.+...+. .... ......+.|++++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~p-----~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 115 PVAPIQIIEGLEGCHSANIDP-----DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCceeeccCCCcccEeEeCC-----CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCE
Confidence 11111 01112233444544 34444 566677999999997633221 1111 12345688999874
Q ss_pred EEEEeC-CCeEEEEeCCC
Q 010816 254 IYTGSQ-DCTIKVWETTQ 270 (500)
Q Consensus 254 l~t~~~-dg~i~lwd~~~ 270 (500)
++++.. +++|.+||+..
T Consensus 189 lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEecCCCEEEEEEEeC
Confidence 555554 89999999863
No 214
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=3.5e-13 Score=119.10 Aligned_cols=243 Identities=17% Similarity=0.264 Sum_probs=163.4
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.|...|+|++|....+.|.+|+.+++|..-|+++.+.+..+. ...+.|+.+..+|..+.|++.+.++.|.+||.+...
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 467899999999999999999999999999999988776543 233589999999999999999999999999987654
Q ss_pred ccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-------ecCccccEEEEEeCCCCe-
Q 010816 184 PSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-------LSGHTLAVTCVKWGGDGV- 253 (500)
Q Consensus 184 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-------~~~h~~~v~~~~~~~~~~- 253 (500)
....+ +.........+-|+|..+ ..+++.+..+-+-+||.+..+.... +......-..+.|+++|.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P----~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q 258 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETP----ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQ 258 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCc----eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCe
Confidence 21111 122234455666777543 5788999999999999986542211 111111113456777663
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEeecCCc-------eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 254 IYTGSQDCTIKVWETTQGKLIRELKGHGH-------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
+++--....-.+||+-..++...-..|.. .+.++++.
T Consensus 259 ~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~------------------------------------ 302 (609)
T KOG4227|consen 259 FMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFI------------------------------------ 302 (609)
T ss_pred ehhhhccCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeee------------------------------------
Confidence 43333333334556544332111111111 11111111
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCC----------------------CCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSK----------------------QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~----------------------~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i 384 (500)
....+++||++..|++|.+.... .....+.||...++.|.|+|...+|++.+..+.+
T Consensus 303 -~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~ 381 (609)
T KOG4227|consen 303 -DDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF 381 (609)
T ss_pred -cceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe
Confidence 12248899999999999863211 1123578999999999999999999999999999
Q ss_pred EEEeC
Q 010816 385 KLWNG 389 (500)
Q Consensus 385 ~lwd~ 389 (500)
+||..
T Consensus 382 KlWS~ 386 (609)
T KOG4227|consen 382 KLWSD 386 (609)
T ss_pred ecccc
Confidence 99974
No 215
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.56 E-value=5.9e-13 Score=115.87 Aligned_cols=334 Identities=17% Similarity=0.292 Sum_probs=192.2
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce-----eEEecCC------------CCCEEEEEEcCCC--CEEEEE
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP-----MFKCTGH------------KNWVLCIAWSADG--KHLVSG 168 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h------------~~~v~~v~~s~~~--~~l~s~ 168 (500)
.+-|.++.|..+|.+||||..+|.|.++.-+.... ...++.| ...|..+.|.+++ ..++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 56788999999999999999999999997543221 1123334 2357889998865 456777
Q ss_pred eCCCeEEEEeCCCCCcccc----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccE
Q 010816 169 SKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV 243 (500)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v 243 (500)
..|++|++|.+........ +..+....++++.. .+.+..|-.+- ..|... -.+|+.-|
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----------p~~~~~~~~ve------a~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----------PVEGRHDLEVE------ASPRRVYANAHTYHI 167 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeec-----------eeeccccceee------eeeeeeccccceeEe
Confidence 8999999998764322110 01111122222221 01111111110 011122 24788899
Q ss_pred EEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816 244 TCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (500)
Q Consensus 244 ~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (500)
.++.+++|...+....|=.|.+|++.-... ...-+.+.|.. -++...+.. ...
T Consensus 168 NSIS~NsD~Et~lSADdLRINLWnlei~d~---------sFnIVDIKP~n----------------mEeLteVIT--saE 220 (433)
T KOG1354|consen 168 NSISVNSDKETFLSADDLRINLWNLEIIDQ---------SFNIVDIKPAN----------------MEELTEVIT--SAE 220 (433)
T ss_pred eeeeecCccceEeeccceeeeeccccccCC---------ceeEEEccccC----------------HHHHHHHHh--hhc
Confidence 999999999888888899999999753211 11111222210 011111000 001
Q ss_pred hcCCCCcEEEEeeCCCeEEEEcCCCCCCCc---------------eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPK---------------TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~---------------~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
........++-+|..|+|++-|++...... ..+.+--..|..+.|+++|+++++-+. -+|++||
T Consensus 221 Fhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD 299 (433)
T KOG1354|consen 221 FHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWD 299 (433)
T ss_pred cCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEe
Confidence 111234678889999999999987432110 111222345888999999999998644 5899999
Q ss_pred C-CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc----
Q 010816 389 G-TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL---- 463 (500)
Q Consensus 389 ~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~---- 463 (500)
+ ...+.+.++..|..--..+ |..+-. .+..+ .--.+|+.++..+++||..+..++|++..+..
T Consensus 300 ~nme~~pv~t~~vh~~lr~kL------c~lYEn--D~Ifd----KFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~t 367 (433)
T KOG1354|consen 300 LNMEAKPVETYPVHEYLRSKL------CSLYEN--DAIFD----KFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFT 367 (433)
T ss_pred ccccCCcceEEeehHhHHHHH------HHHhhc--cchhh----eeEEEEcCCcceEecccccceEEEecCCCCcceeec
Confidence 9 5566676666554210000 000000 00000 00126888999999999999999999543221
Q ss_pred ----------------cccccCcc--------------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 464 ----------------KQDLPGHA--------------DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 ----------------~~~~~~h~--------------~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.....+.. ..++..+|+|..+.+|.+...+ ++|+.
T Consensus 368 l~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif~ 432 (433)
T KOG1354|consen 368 LEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIFQ 432 (433)
T ss_pred ccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEec
Confidence 01111111 1355678999998888877644 66653
No 216
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.5e-12 Score=128.97 Aligned_cols=276 Identities=18% Similarity=0.275 Sum_probs=177.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
-+++.+.++-. ++|+.|. --.|.+||..++..+......+...+. ...........++++++.-+.+..=+...
T Consensus 7 ~~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H---~~e~~~~l~~~~~v~~~~~~~v~~~~~~~ 80 (967)
T KOG0974|consen 7 LGPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVH---RGEGKVKLLSGKIVTCAKSDEVYVKEASN 80 (967)
T ss_pred cccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccc---cccccceeccceEEEEEeecceeecchhh
Confidence 34455555543 5666543 457999999877543221111111111 00000111234566665544444322221
Q ss_pred CeEEEEecCccccEEEEE-eCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEE-EEEecCcceeeeccccCCCCCC
Q 010816 230 RKCVICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVN-SLALSTEYALRTGAFDHTGKQY 307 (500)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~-~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~ 307 (500)
.. ...+..+ |.... +-.+..++.+..++.+-+||...+.....+........ +...-.
T Consensus 81 ~~-~~~~s~w---i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g---------------- 140 (967)
T KOG0974|consen 81 QI-IERFSDW---IFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIG---------------- 140 (967)
T ss_pred hh-hhhcccc---ccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEe----------------
Confidence 11 0001111 11111 12345788889999999999887766554433222111 111000
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
.+..+-++++|+.-+.|.+|++.....+ ..+.||.+.+-++.++.||+++++.|.|+++|+|
T Consensus 141 -----------------~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW 202 (967)
T KOG0974|consen 141 -----------------DSAEELYIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLW 202 (967)
T ss_pred -----------------ccCcEEEEEeccccccEEEEeccccCCc-ceecccCCceEEEEEccCCcEEEEEecCcceeee
Confidence 0112346888999999999998743333 3789999999999999999999999999999999
Q ss_pred eCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816 388 NGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 466 (500)
Q Consensus 388 d~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 466 (500)
++.+.+... +.-+|...+.++.+ .|+ .+++++.|-++++|+....+ +..
T Consensus 203 ~i~s~~~~~~~~fgHsaRvw~~~~---------------------------~~n--~i~t~gedctcrvW~~~~~~-l~~ 252 (967)
T KOG0974|consen 203 PIDSREVLGCTGFGHSARVWACCF---------------------------LPN--RIITVGEDCTCRVWGVNGTQ-LEV 252 (967)
T ss_pred ecccccccCcccccccceeEEEEe---------------------------ccc--eeEEeccceEEEEEecccce-ehh
Confidence 999988765 67789998887743 566 89999999999999655433 347
Q ss_pred ccCccc-CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 467 LPGHAD-EVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 467 ~~~h~~-~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+|.+ .++.++..++...++|++.|+.+++|+
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence 777864 689999999999999999999999996
No 217
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=7.8e-11 Score=111.22 Aligned_cols=295 Identities=20% Similarity=0.187 Sum_probs=164.7
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCccccccc
Q 010816 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~ 190 (500)
..+.|+|||+++.+++.||.|.++|+.+.+.+.....- .....+++++||++++++. .++.+.++|.++.+..+....
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 45789999999999999999999999999988777643 3467899999999998765 589999999988776543211
Q ss_pred C------cccceEEEEeeeeecCCCCceEEEEeCC-CcEEEEECCCCeEEE-EecCccccEEEEEeCCCCe-E-EEEeCC
Q 010816 191 G------HKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGV-I-YTGSQD 260 (500)
Q Consensus 191 ~------~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~-l-~t~~~d 260 (500)
+ ....+.++...| ....|+..-.| +.|.+-|....+.+. .............|++++. + ++...+
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~-----~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s 193 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASP-----GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS 193 (369)
T ss_dssp -EE-TTTS---EEEEEE-S-----SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG
T ss_pred ccccccccCCCceeEEecC-----CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc
Confidence 1 122444554333 22346555554 777777876543322 1111223445678888873 3 445567
Q ss_pred CeEEEEeCCCCeeEEEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 261 CTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
+.|-++|..+++.+..+.. |..++..+ .++.+...... . +.....++.-
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~-~-------------------------~~~~~~~~~i 246 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWAT-S-------------------------GLGYFAIPLI 246 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEE-E-------------------------BSSSSEEEEE
T ss_pred ceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEee-c-------------------------cccceecccc
Confidence 8999999999887665432 22222222 12221000000 0 0001111111
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE----eCCCcEEEEeCCCCceEEEEeCCcc-cEEEEEee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA----SFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFE 411 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg----s~Dg~i~lwd~~~~~~~~~~~~h~~-~v~~~~~~ 411 (500)
....+.+||....+ ....+...... .-+..+|+++++.+. ...+.|.++|.++.+.+..+....+ .+..+
T Consensus 247 g~~~v~v~d~~~wk-vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~--- 321 (369)
T PF02239_consen 247 GTDPVSVHDDYAWK-VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM--- 321 (369)
T ss_dssp E--TTT-STTTBTS-EEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE---
T ss_pred cCCccccchhhcCe-EEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc---
Confidence 11233345544322 23334333444 667889999999987 4458999999999877666542221 23333
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC--cEEEEECCCcccccccc
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~ 468 (500)
.|+++|+++..+..++ .|.+||..+.++++.++
T Consensus 322 ------------------------ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 322 ------------------------EFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp ------------------------EE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ------------------------EECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 5799999777665443 69999999998887665
No 218
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=2.9e-10 Score=107.42 Aligned_cols=292 Identities=20% Similarity=0.250 Sum_probs=163.5
Q ss_pred EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeee
Q 010816 124 ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEP 203 (500)
Q Consensus 124 at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~ 203 (500)
++-..++.|.|.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+++.......+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G------------ 77 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVG------------ 77 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S------------
T ss_pred EEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecC------------
Confidence 45567899999999999888888755444455789999999999999999999999877643211000
Q ss_pred eecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRELKGHG 281 (500)
Q Consensus 204 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~~~~~~ 281 (500)
..-..+++++||. ++ +...++.+.++|..+.+.++.+....
T Consensus 78 -------------------------------------~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 78 -------------------------------------GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp -------------------------------------SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred -------------------------------------CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 1123456666663 33 34467888888888877777654321
Q ss_pred -------ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816 282 -------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (500)
Q Consensus 282 -------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~ 354 (500)
..+.++..++. .++.+++--+.+.|.+-|.........
T Consensus 121 ~~~~~~~~Rv~aIv~s~~-----------------------------------~~~fVv~lkd~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPG-----------------------------------RPEFVVNLKDTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp E-TTTS---EEEEEE-SS-----------------------------------SSEEEEEETTTTEEEEEETTTSSCEEE
T ss_pred ccccccCCCceeEEecCC-----------------------------------CCEEEEEEccCCeEEEEEeccccccce
Confidence 12333322221 122333334446666666544333333
Q ss_pred eeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeC----CcccEEEEE---eeeeeeecCCCCc----
Q 010816 355 RMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRG----HVGPVYQIR---FELIYCFRYPSNF---- 422 (500)
Q Consensus 355 ~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~---~~~~~~~~~~~~~---- 422 (500)
....-........|+|++++++.+ -.+..|-++|..+++.+..+.. |.+++..+. +...+.......+
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ 245 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPL 245 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEE
T ss_pred eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceeccc
Confidence 333334556788999999987665 4567899999999988765432 444444332 1112221111110
Q ss_pred --------------eee--eeccccceeeEEcCCCCEEEEE----ECCCcEEEEECCCccccccccCcc-cCEEEEEEcC
Q 010816 423 --------------YCV--VDMSCCMSLYSWSADSRLLLSG----SKDSTLKVWDIRTQKLKQDLPGHA-DEVFAVDWSP 481 (500)
Q Consensus 423 --------------~~~--~~~~~~~~~~~~s~~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~ 481 (500)
..+ +.......-+..+|+++++... ...+.|.++|.++.+....+.... .++..+.|++
T Consensus 246 ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~ 325 (369)
T PF02239_consen 246 IGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNP 325 (369)
T ss_dssp EE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-T
T ss_pred ccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECC
Confidence 011 1111112223468999999988 345799999999987766654322 3588999999
Q ss_pred CCCEEEEEeCC--CcEEEec
Q 010816 482 DGEKVASGGKD--RVLKLWM 499 (500)
Q Consensus 482 dg~~l~s~~~D--~~v~iW~ 499 (500)
||+++..+..| +.|.+++
T Consensus 326 dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 326 DGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp TSSEEEEEEE--TTEEEEEE
T ss_pred CCCEEEEEEecCCCEEEEEE
Confidence 99977554443 3688876
No 219
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.7e-11 Score=117.89 Aligned_cols=233 Identities=17% Similarity=0.189 Sum_probs=140.1
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..|.+||....... .+..+...+.+.+|+|||+.|+..+. +..|.+||+.+|+...
T Consensus 179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-------------------- 237 (429)
T PRK03629 179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-------------------- 237 (429)
T ss_pred eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------
Confidence 36888888765443 33456678999999999999886543 3457777766553211
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDC--TIKVWETTQGKLIRELKGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg--~i~lwd~~~~~~~~~~~~~~~ 282 (500)
+..+.++ +....|+|||. |+ +.+.+| .|.+||+.+++..+ +..+..
T Consensus 238 --------------------------l~~~~~~---~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~ 287 (429)
T PRK03629 238 --------------------------VASFPRH---NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRS 287 (429)
T ss_pred --------------------------ccCCCCC---cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCC
Confidence 0001111 12356777763 33 233344 48888988776543 322333
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CCeEEEE--cCCCCCCCceeeecc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLW--EPAVSKQPKTRMTGH 359 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~w--d~~~~~~~~~~~~~h 359 (500)
.+....++|+ +..++..+. ++...+| |+... ....+..+
T Consensus 288 ~~~~~~wSPD------------------------------------G~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~ 329 (429)
T PRK03629 288 NNTEPTWFPD------------------------------------SQNLAYTSDQAGRPQVYKVNINGG--APQRITWE 329 (429)
T ss_pred CcCceEECCC------------------------------------CCEEEEEeCCCCCceEEEEECCCC--CeEEeecC
Confidence 3445555554 234544443 3444444 54332 22333334
Q ss_pred cCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
........|+|||++|+..+.+ ..|.+||+.+++.......+. ....+
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~~-----------------------------~~~p~ 380 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTFL-----------------------------DETPS 380 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCCC-----------------------------CCCce
Confidence 4445678999999999876654 358889988776432111100 01126
Q ss_pred EcCCCCEEEEEECCCc---EEEEECCCccccccccCcccCEEEEEEcC
Q 010816 437 WSADSRLLLSGSKDST---LKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~---v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
|+|||++|+.++.++. +.++++ .++....+.+|.+.+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 8999999999998865 566776 4555566778888899999998
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=1.1e-11 Score=120.80 Aligned_cols=236 Identities=18% Similarity=0.205 Sum_probs=133.9
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..+.++|..... ...+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +.
T Consensus 176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--l~---------------- 236 (427)
T PRK02889 176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--VA---------------- 236 (427)
T ss_pred cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--ee----------------
Confidence 457777775433 33455677889999999999999877643 347777776553211 00
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCeEEEEe--CCCCeeEEEeecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWE--TTQGKLIRELKGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~i~lwd--~~~~~~~~~~~~~~~ 282 (500)
.....+.+..|+||+. | ++.+.++...+|. +..+. .+.+..+..
T Consensus 237 -------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~ 284 (427)
T PRK02889 237 -------------------------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG 284 (427)
T ss_pred -------------------------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC
Confidence 0011223456777763 3 3456666655554 43333 333333333
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecccC
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQ 361 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~ 361 (500)
......++++ +..++..+ .++...+|...........+..+..
T Consensus 285 ~~~~~~wSpD------------------------------------G~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~ 328 (427)
T PRK02889 285 IDTEPFFSPD------------------------------------GRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGS 328 (427)
T ss_pred CCcCeEEcCC------------------------------------CCEEEEEecCCCCcEEEEEECCCCceEEEecCCC
Confidence 3334445544 23344333 3455566654322222222222222
Q ss_pred cEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 362 LVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
.....+|||||++|+..+.++ .|.+||+.+++......+. . ....+|+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~---------------------------~~~p~~s 379 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--R---------------------------DESPSFA 379 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--C---------------------------ccCceEC
Confidence 344678999999998777654 6999999887643221110 0 0112689
Q ss_pred CCCCEEEEEECCC---cEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816 439 ADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 439 ~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
|||++|+.++.++ .+.+.++ .++....+..+.+.+...+|+|-
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCCCCCCCccCCC
Confidence 9999998877654 3455555 35555556566677788899873
No 221
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=1.8e-11 Score=113.70 Aligned_cols=285 Identities=17% Similarity=0.271 Sum_probs=178.0
Q ss_pred CCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 106 GHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHK--NWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
+|...-+.|..+|||+++ |||..--.|++||+..-.. .+..|. ..|.-.-.+.|-..++--..|.+|.+-.- -|
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--eeeecccccceeEEEeccchhhheEeecCceeeehhh-cC
Confidence 466677889999999975 6777889999999875432 222332 22333333334334444455666655421 11
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDC 261 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg 261 (500)
......+.. .-..+.++ ...|..++ ++....|+-.+++.|..+..+.-....+.++..++ .++|++|+.||
T Consensus 126 ~hy~~RIP~---~GRDm~y~----~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 126 RHYRTRIPK---FGRDMKYH----KPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred eeeeeecCc---CCcccccc----CCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCc
Confidence 111000000 00112222 12344444 44556777788888888877776778888888876 46778888899
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
.|..||.++...+..+..... |.
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~-v~-------------------------------------------------------- 220 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASS-VN-------------------------------------------------------- 220 (703)
T ss_pred eEEEecchhhhhheeeecccc-cC--------------------------------------------------------
Confidence 999999887654443321100 00
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc--cEEEEEeeeeeeecCC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--PVYQIRFELIYCFRYP 419 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~ 419 (500)
..+ .......|+++.|+.+|-.+++|..+|.|.|||+++.+.+.+ +.|.. +|..+
T Consensus 221 --------s~p---g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l----------- 277 (703)
T KOG2321|consen 221 --------SHP---GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKL----------- 277 (703)
T ss_pred --------CCc---cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeee-----------
Confidence 000 001123589999999999999999999999999999877653 45544 33333
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECC-CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.|.+.++.=...+.| ..++|||-.+++....+... ..+..+++-|++-.+.++-.+..+..+
T Consensus 278 ----------------~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 278 ----------------DWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTY 340 (703)
T ss_pred ----------------cccccCCCceEEecchHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeE
Confidence 344443332333344 56899999999887766543 348899999999999999888766543
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.47 E-value=8.7e-12 Score=110.57 Aligned_cols=245 Identities=13% Similarity=0.183 Sum_probs=165.3
Q ss_pred cccEEEEEEcCCCC--eEEEEeCCCcEEEEeCCCCceeE------EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 108 TEAVLSVAFSPDGR--QLASGSGDTTVRLWDLNTQTPMF------KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 108 ~~~V~~~~~sp~~~--~lat~~~d~~i~iwd~~~~~~~~------~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
...|.++.|.-+++ .|...+.|..+............ .....+.+|..+... | ..|++|-.+|.+++|..
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRHD 132 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEec
Confidence 44566777765543 45555566667766665443322 223445566666553 3 47888899999999998
Q ss_pred CCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCC--CcEEEEECCCCeEEEEecC-------cc--ccEEE
Q 010816 180 QTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKD--GDARIWDVSLRKCVICLSG-------HT--LAVTC 245 (500)
Q Consensus 180 ~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d--g~v~iwd~~~~~~~~~~~~-------h~--~~v~~ 245 (500)
+.+..-.. .+..+ ..+..+.-.+. ....+++||.. ..++|||++..+.+..-+. -. ..+++
T Consensus 133 k~~d~hss~l~~la~g-~g~~~~r~~~~----~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 133 KSGDLHSSKLIKLATG-PGLYDVRQTDT----DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred cCCccccccceeeecC-CceeeeccCCC----CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 75431100 01111 11222222221 22467779999 8999999988765543221 11 23456
Q ss_pred EEeCCC---CeEEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 246 VKWGGD---GVIYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 246 ~~~~~~---~~l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+.|-+. ..|++++.-+.+|+||.+.++ .+..+.....++.++...|.
T Consensus 208 i~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~----------------------------- 258 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPS----------------------------- 258 (412)
T ss_pred ceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCC-----------------------------
Confidence 777544 479999999999999998663 45555555566666655443
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
+..+++|..-+.+..||.+........+.+-.+.|+++..+|.+++||+++.|+.|||+|.++.+++
T Consensus 259 -------gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 259 -------GNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred -------CcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 4568889999999999998877777778888899999999999999999999999999999986554
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.46 E-value=4.1e-12 Score=108.80 Aligned_cols=108 Identities=31% Similarity=0.609 Sum_probs=83.6
Q ss_pred cCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 360 QQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasg--s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
...|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ......+ .|
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i---------------------------~w 108 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTI---------------------------SW 108 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEE---------------------------EE
Confidence 4469999999999987654 467899999996 55555443 2333333 68
Q ss_pred cCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816 438 SADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM 499 (500)
Q Consensus 438 s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~ 499 (500)
||+|++|+.|+.+ |.+.+||+++.+.+.... | ..+..++|+|||++|++++. |+.++||+
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 9999999998754 569999999888776654 3 34789999999999999875 78888886
No 224
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.2e-11 Score=120.79 Aligned_cols=233 Identities=19% Similarity=0.201 Sum_probs=137.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..|.+||.....+ ..+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++... +.
T Consensus 184 ~~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--l~---------------- 244 (433)
T PRK04922 184 YALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--VA---------------- 244 (433)
T ss_pred EEEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--ec----------------
Confidence 4689999865443 3455677789999999999999987643 357777776553210 00
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~ 282 (500)
.......+..|++||. | ++.+.+| .|.+||+.+++.. .+..+..
T Consensus 245 -------------------------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~ 292 (433)
T PRK04922 245 -------------------------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG 292 (433)
T ss_pred -------------------------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCC
Confidence 0011122456777763 3 3444444 5888898877643 3333333
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCe--EEEEcCCCCCCCceeeecc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFT--MFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~--v~~wd~~~~~~~~~~~~~h 359 (500)
.....+++++ +..++..+ .++. +++++..... ...+..+
T Consensus 293 ~~~~~~~spD------------------------------------G~~l~f~sd~~g~~~iy~~dl~~g~--~~~lt~~ 334 (433)
T PRK04922 293 IDTEPTWAPD------------------------------------GKSIYFTSDRGGRPQIYRVAASGGS--AERLTFQ 334 (433)
T ss_pred CccceEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCC--eEEeecC
Confidence 3334455543 23444444 3444 5555553322 2223223
Q ss_pred cCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
.......+|||||++|+..+.++ .|.+||+.+++... +. +.... ...+
T Consensus 335 g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~---------------------------~~p~ 385 (433)
T PRK04922 335 GNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLD---------------------------ESPS 385 (433)
T ss_pred CCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCC---------------------------CCce
Confidence 33345689999999998765443 69999998876542 21 11010 1126
Q ss_pred EcCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 437 WSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 437 ~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
|+|||++++..+.+ +.+.++++.. .....+..+.+.+...+|+|
T Consensus 386 ~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 386 FAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCCCCCCCCccCC
Confidence 89999988877654 3577788754 34455555566677888887
No 225
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.46 E-value=1.6e-11 Score=113.21 Aligned_cols=242 Identities=20% Similarity=0.244 Sum_probs=149.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee----EEecCCCCCEEEEEEc-----CCCCEEEEEeCCCeEEEEeCCC
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWS-----ADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s-----~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
+....++-.|++|+..-.+ .+.+|+...+..+ ....-....-.|-+|+ +++--|+.|-..|.+++.|+..
T Consensus 126 ~~~~~~~~~gd~lcFnvg~-~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGR-ELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEecCC-eEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 4445555567777665333 5788887643221 1111111223444553 4566778888889999998765
Q ss_pred CCcccccc----cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC--CCC-eE
Q 010816 182 GKPSGNPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG--GDG-VI 254 (500)
Q Consensus 182 ~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~-~l 254 (500)
.+.. ..+ .-.+..|+++.|.|... ..|+.+-.+|.+.+||...- ...+...|. +++ .+
T Consensus 205 ~~~s-klfne~r~i~ktsvT~ikWvpg~~----~~Fl~a~~sGnlyly~~~~~----------~~~t~p~~~~~k~~~~f 269 (636)
T KOG2394|consen 205 FEVS-KLFNEERLINKSSVTCIKWVPGSD----SLFLVAHASGNLYLYDKEIV----------CGATAPSYQALKDGDQF 269 (636)
T ss_pred hHHH-HhhhhcccccccceEEEEEEeCCC----ceEEEEEecCceEEeecccc----------ccCCCCcccccCCCCee
Confidence 3211 111 11246789999998543 47888899999999987311 111111111 111 11
Q ss_pred EEEeCCCeEEEEeC-CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 255 YTGSQDCTIKVWET-TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 255 ~t~~~dg~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
. |..|.- .+...+.....-...|..++++++ +.+|+
T Consensus 270 ~-------i~t~ksk~~rNPv~~w~~~~g~in~f~FS~D------------------------------------G~~LA 306 (636)
T KOG2394|consen 270 A-------ILTSKSKKTRNPVARWHIGEGSINEFAFSPD------------------------------------GKYLA 306 (636)
T ss_pred E-------EeeeeccccCCccceeEeccccccceeEcCC------------------------------------CceEE
Confidence 1 111110 011111111112224555555554 46799
Q ss_pred EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 412 (500)
+-|.||.++|||..... ....++.--....|++|||||++|++|++|--|.||....++.+....||+.+|..|+|..
T Consensus 307 ~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 307 TVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 99999999999965432 2223334456789999999999999999999999999999999999999999999999975
No 226
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=3.6e-11 Score=105.63 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=128.9
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
.+..++|++.-.-+|.+..|-+|+|||-....+...-..-...|.|++|-|.+ +.|+.|+ -+-|.+|.....-...
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~~-- 176 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNAN-- 176 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCcccccc--
Confidence 57788999988888999999999999987643322222345679999999975 4555555 4568999764211000
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEE
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVW 266 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lw 266 (500)
+.+.+...+.. .+..-.|| .+|+++.|.+||. +++++ .|..|.+|
T Consensus 177 -----------------------r~~~~~s~~~~---------qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iW 223 (445)
T KOG2139|consen 177 -----------------------RNIRMMSTHHL---------QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIW 223 (445)
T ss_pred -----------------------cccccccccch---------hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEE
Confidence 00011111111 11122455 7899999999985 66665 46789999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|..++..+.........+.-+.++|+ ++.++++.-|+..++|..
T Consensus 224 dpdtg~~~pL~~~glgg~slLkwSPd------------------------------------gd~lfaAt~davfrlw~e 267 (445)
T KOG2139|consen 224 DPDTGQKIPLIPKGLGGFSLLKWSPD------------------------------------GDVLFAATCDAVFRLWQE 267 (445)
T ss_pred cCCCCCcccccccCCCceeeEEEcCC------------------------------------CCEEEEecccceeeeehh
Confidence 99998766554344455667778776 457889999999999964
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~ 380 (500)
...... .+..-.++.|...+|+|+|.+|.-.+.
T Consensus 268 ~q~wt~-erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 268 NQSWTK-ERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ccccee-cceeccCCceeeeeecCCCCEEEEEEc
Confidence 332211 111122347899999999987765443
No 227
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=8.1e-10 Score=102.82 Aligned_cols=312 Identities=16% Similarity=0.228 Sum_probs=179.1
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
.+....+++++|+++|-+ .++.++|++..+...+..... ..+.++.|+|-|.+|.+= ..-.+|...+
T Consensus 35 ~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt~~~--~~~~~L~fSP~g~yL~T~---e~~~i~~~~~------- 101 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLCVEL--KKTYDLLFSPKGNYLLTW---EPWAIYGPKN------- 101 (566)
T ss_pred CcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEEecc--ceeeeeeecccccccccc---cccccccCCC-------
Confidence 346678899999987765 566899999888754443332 278999999999888651 0001111000
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~ 268 (500)
. ..-.+++|++.++.....+......-++..|+.|..+++---.+.+.+|+.
T Consensus 102 ----~------------------------~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~ 153 (566)
T KOG2315|consen 102 ----A------------------------SNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDL 153 (566)
T ss_pred ----C------------------------CCCceeeeeeccceehhheehhhhcCcccccccchhhhhhhhcceEEEEec
Confidence 0 023467777777444433333222225777888876665555678999987
Q ss_pred CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-----EeeCCCeEEE
Q 010816 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-----SGSDDFTMFL 343 (500)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~s~d~~v~~ 343 (500)
..-+.. .-+.|...+..+.++|... ...++ .++.-..+++
T Consensus 154 ~~f~~~-~~kl~~~~i~~f~lSpgp~----------------------------------~~~vAvyvPe~kGaPa~vri 198 (566)
T KOG2315|consen 154 GSFKTI-QHKLSVSGITMLSLSPGPE----------------------------------PPFVAVYVPEKKGAPASVRI 198 (566)
T ss_pred CCccce-eeeeeccceeeEEecCCCC----------------------------------CceEEEEccCCCCCCcEEEE
Confidence 653221 1223455666777666411 11111 2455667888
Q ss_pred EcCCCCCC--CceeeecccCcEEEEEECCCCC-E--EEEEeCCC---------cEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 344 WEPAVSKQ--PKTRMTGHQQLVNHVYFSPDGQ-W--VASASFDK---------SIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 344 wd~~~~~~--~~~~~~~h~~~v~~l~~sp~g~-~--lasgs~Dg---------~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
|....... +...-.-....=..+.|++-|. + |++..-|. ++++.+.+ |+...+--.-.++|+++.
T Consensus 199 ~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 199 YKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVT 277 (566)
T ss_pred eccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEE
Confidence 87542111 1111000112223467777664 2 23333343 57777777 332222112478898888
Q ss_pred eeee-----eeecCCCCceeeeeccc---------cceeeEEcCCCCEEEEEECC---CcEEEEECCCccccccccCccc
Q 010816 410 FELI-----YCFRYPSNFYCVVDMSC---------CMSLYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHAD 472 (500)
Q Consensus 410 ~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~ 472 (500)
+... .++-+-.....+.+..| .-..+-|+|.|++++.++.+ |.|-|||+...+++..+..-..
T Consensus 278 W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t 357 (566)
T KOG2315|consen 278 WSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT 357 (566)
T ss_pred ECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc
Confidence 7421 12211111111222211 11223589999999988865 7899999999888777665433
Q ss_pred CEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816 473 EVFAVDWSPDGEKVASGGK------DRVLKLWM 499 (500)
Q Consensus 473 ~V~~l~~s~dg~~l~s~~~------D~~v~iW~ 499 (500)
+-++|+|||++|+|++. |+-++||+
T Consensus 358 --t~~eW~PdGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 358 --TVFEWSPDGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred --eEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence 45789999999999876 67788886
No 228
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.44 E-value=3e-10 Score=109.46 Aligned_cols=307 Identities=13% Similarity=0.056 Sum_probs=185.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~ 198 (500)
.+..++.++.++.+.-+|..+++.+....-.......... ++..++.++.++.+..+|..+|+........ ..+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~- 138 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS--SEVL- 138 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC--ceee-
Confidence 3667888889999999999999887665433321122222 4678888999999999999998764321111 1111
Q ss_pred EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEE-----EEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816 199 ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT-----CVKWGGDGVIYTGSQDCTIKVWETTQGKL 273 (500)
Q Consensus 199 ~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~-----~~~~~~~~~l~t~~~dg~i~lwd~~~~~~ 273 (500)
-.|.. ....++.++.++.+..||.++++.+..+........ +... .++.++.+..++.+..+|..+|+.
T Consensus 139 --~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 139 --SPPLV---ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred --cCCEE---ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-ECCEEEEECCCCEEEEEEccCCCE
Confidence 11211 224677788899999999999987766543222111 1111 135788888899999999999876
Q ss_pred EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (500)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~ 353 (500)
+........ .. ... . . ...............++.++.++.++.+|....+...
T Consensus 213 ~W~~~~~~~---------~g-----~~~-----~---~-----~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W 265 (377)
T TIGR03300 213 LWEQRVALP---------KG-----RTE-----L---E-----RLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLW 265 (377)
T ss_pred eeeeccccC---------CC-----CCc-----h---h-----hhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEE
Confidence 654321000 00 000 0 0 0000000000013467778889999999976543221
Q ss_pred eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (500)
Q Consensus 354 ~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (500)
... .. .... ...++..+..++.||.+..+|..+|+.+-.......... +
T Consensus 266 ~~~--~~-~~~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~--------------------------s 314 (377)
T TIGR03300 266 KRD--AS-SYQG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQL--------------------------T 314 (377)
T ss_pred eec--cC-CccC--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcc--------------------------c
Confidence 111 11 1111 112467788888999999999999987643321111000 0
Q ss_pred eeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEe
Q 010816 434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+....+..+++++.||.++++|..+++.+..++.+...+.. ..+. + ..|+.++.||.|+.+
T Consensus 315 --sp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 315 --APAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred --cCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 00124668889999999999999999988777665544332 2222 3 469999999999876
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=1.2e-10 Score=114.16 Aligned_cols=232 Identities=16% Similarity=0.166 Sum_probs=137.5
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..|.+||..+..+ ..+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++...
T Consensus 182 ~~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-------------------- 240 (435)
T PRK05137 182 KRLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-------------------- 240 (435)
T ss_pred eEEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------
Confidence 3788888865443 456678889999999999999887764 3567777776553210
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCe--EEEEeCCCCeeEEEeecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~--i~lwd~~~~~~~~~~~~~~~ 282 (500)
+..+...+.+..|++||. | ++.+.++. |.+||+.++.. +.+..+..
T Consensus 241 -----------------------------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~ 290 (435)
T PRK05137 241 -----------------------------VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPA 290 (435)
T ss_pred -----------------------------eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCC
Confidence 111122334567888773 3 45555554 77778877654 33443433
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CC--CeEEEEcCCCCCCCceeeecc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DD--FTMFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d--~~v~~wd~~~~~~~~~~~~~h 359 (500)
......++|+ +..++..+ .+ ..|+++|..... ...+..+
T Consensus 291 ~~~~~~~spD------------------------------------G~~i~f~s~~~g~~~Iy~~d~~g~~--~~~lt~~ 332 (435)
T PRK05137 291 IDTSPSYSPD------------------------------------GSQIVFESDRSGSPQLYVMNADGSN--PRRISFG 332 (435)
T ss_pred ccCceeEcCC------------------------------------CCEEEEEECCCCCCeEEEEECCCCC--eEEeecC
Confidence 3444455544 23444433 23 357777754322 2334434
Q ss_pred cCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 360 QQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
...+....|+|||+.|+..+.+ ..|.+||+.++.. ..+.. ... ....+
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~---------------------------~~~p~ 383 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFL---------------------------VEGPT 383 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCC---------------------------CCCCe
Confidence 4556678899999999877654 3688888755432 21111 000 11237
Q ss_pred EcCCCCEEEEEECC------CcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 437 WSADSRLLLSGSKD------STLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 437 ~s~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
|+|||++|+..+.+ ..+.++|+..+.. ..+.. .+.+...+|+|
T Consensus 384 ~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~~~~~p~Wsp 432 (435)
T PRK05137 384 WAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT-PGDASDPAWSP 432 (435)
T ss_pred ECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccC-CCCccCcccCC
Confidence 89999998876543 2577788766544 33432 34466778887
No 230
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.5e-11 Score=108.00 Aligned_cols=202 Identities=24% Similarity=0.433 Sum_probs=130.9
Q ss_pred cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCC
Q 010816 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~ 270 (500)
..+..++|++ ++. .|+++..|-.|++||-+. ++...++ .....|+|++|.|.+ .|+.|+.. .|.+|....
T Consensus 99 ~dlr~~aWhq-H~~----~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQ-HII----AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSR 171 (445)
T ss_pred cceeeEeech-hhh----hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCc
Confidence 3456788887 332 588999999999999876 4443333 345679999998754 46666664 578896532
Q ss_pred CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~ 350 (500)
.-.. . +...+.....
T Consensus 172 tln~-------~------------------------------------------------r~~~~~s~~~---------- 186 (445)
T KOG2139|consen 172 TLNA-------N------------------------------------------------RNIRMMSTHH---------- 186 (445)
T ss_pred cccc-------c------------------------------------------------cccccccccc----------
Confidence 1000 0 0000000000
Q ss_pred CCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (500)
Q Consensus 351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 429 (500)
.....-.+| ..|+++.|.+||..+++++. |..|.|||+.++..+....-..+
T Consensus 187 ~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-------------------------- 239 (445)
T KOG2139|consen 187 LQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-------------------------- 239 (445)
T ss_pred hhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC--------------------------
Confidence 011122345 57999999999999999887 57899999999876543211112
Q ss_pred ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEE-EEeCCCcE
Q 010816 430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVL 495 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v 495 (500)
.++.+.|||||.+|.++.-|+..++|+...........-..+.|....|+|+|++|. +++..-++
T Consensus 240 -g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~l 305 (445)
T KOG2139|consen 240 -GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRL 305 (445)
T ss_pred -ceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceE
Confidence 223447899999999999999999996543322233333345899999999999864 45554443
No 231
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=1e-10 Score=101.19 Aligned_cols=224 Identities=13% Similarity=0.208 Sum_probs=139.4
Q ss_pred CCCceEEEEeCCCcEEEEECCCCeEEEEecCcc--ccEEEEEeCCCCeEEEEeCC------CeEEEEeCCCCeeEEEeec
Q 010816 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHT--LAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~t~~~d------g~i~lwd~~~~~~~~~~~~ 279 (500)
++..-|+.| .|.-.|||+....+......-+. -.+.-+-|..+-..+.||.+ +.+-|||-...+++.++..
T Consensus 15 QD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f 93 (346)
T KOG2111|consen 15 QDHSCFAVA-TDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSF 93 (346)
T ss_pred cCCceEEEE-ecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEEEEEe
Confidence 344445554 45558999986533221111111 12222223333233445444 5799999666666666543
Q ss_pred CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee--e
Q 010816 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM--T 357 (500)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~--~ 357 (500)
..+|.++.+.++ +++.. ..+.|++|...........+ .
T Consensus 94 -~~~I~~V~l~r~--------------------------------------riVvv-l~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 94 -NSEIKAVKLRRD--------------------------------------RIVVV-LENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred -ccceeeEEEcCC--------------------------------------eEEEE-ecCeEEEEEcCCChhheeeeecc
Confidence 345666666543 33332 34578888654222111111 1
Q ss_pred cccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816 358 GHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434 (500)
Q Consensus 358 ~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (500)
..+...-+++-+.+..+||.=| .-|.|+|-|+...+. .....+|.+.|.++
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv-------------------------- 187 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACV-------------------------- 187 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEE--------------------------
Confidence 1223333333333445555433 458899999876554 46778999998887
Q ss_pred eEEcCCCCEEEEEECCCc-EEEEECCCccccccccCc--ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 435 YSWSADSRLLLSGSKDST-LKVWDIRTQKLKQDLPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+-+|.++|++|..|+ |||||..+++++..++-. ...|++++|||+..+||.+|+-|+|+|+.
T Consensus 188 -~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 188 -ALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred -EEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 44779999999999986 799999999988776532 34799999999999999999999999974
No 232
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.1e-10 Score=113.55 Aligned_cols=161 Identities=19% Similarity=0.242 Sum_probs=99.4
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEe---CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE-eCCC--eEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAG--ELQ 175 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~---~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~--~i~ 175 (500)
..+..+.+.+.+.+|+|||+.||..+ .+..+.+|++.+++... +....+.+..+.|+|||+.|+.. +.++ .|.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~ 270 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 270 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEE
Confidence 34455667899999999999998654 34579999998775432 22233335568999999988754 4454 588
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-CcEEEE--ECCCCeEEEEecCccccEEEEEeCCCC
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIW--DVSLRKCVICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (500)
+||+.+++... +..+...+....|+| +++.++..+.+ +..+|| |+..+... .+..+.....+..|++||
T Consensus 271 ~~d~~tg~~~~--lt~~~~~~~~~~wSP-----DG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG 342 (429)
T PRK03629 271 VMDLASGQIRQ--VTDGRSNNTEPTWFP-----DSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDG 342 (429)
T ss_pred EEECCCCCEEE--ccCCCCCcCceEECC-----CCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCC
Confidence 89998876432 233334566778876 45567666543 444555 66555432 222233344567788887
Q ss_pred e-EEEEeC-C--CeEEEEeCCCC
Q 010816 253 V-IYTGSQ-D--CTIKVWETTQG 271 (500)
Q Consensus 253 ~-l~t~~~-d--g~i~lwd~~~~ 271 (500)
. |+..+. + ..|.+||+.++
T Consensus 343 ~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 343 KFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CEEEEEEccCCCceEEEEECCCC
Confidence 3 444333 2 24566666544
No 233
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.41 E-value=8.4e-11 Score=118.54 Aligned_cols=145 Identities=13% Similarity=0.237 Sum_probs=94.9
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCce-eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEE
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKT-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQI 408 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~-~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~ 408 (500)
.++.+..-+.+..||++....... +.....+.|++++.+|.+.+++.|...|.+-+||++=+..+..+.- +..++..+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHV 1244 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceE
Confidence 567778888999999875433221 1122346799999999999999999999999999988777765542 34555544
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCc----------------
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGH---------------- 470 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h---------------- 470 (500)
... .+.|.....++++ ..+.|-+|++.++.....+...
T Consensus 1245 ~~~------------------------~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~ 1300 (1431)
T KOG1240|consen 1245 WLC------------------------PTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDAR 1300 (1431)
T ss_pred Eee------------------------ccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCC
Confidence 321 1123334444444 4678999999887543332211
Q ss_pred ---ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 471 ---ADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 471 ---~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.-......+-.-+..+.+||.|..||.|+
T Consensus 1301 kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1301 KPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CCCcccceeeecccCCceeeecCCccceeecc
Confidence 11112233333456889999999999997
No 234
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.38 E-value=1.7e-12 Score=117.41 Aligned_cols=223 Identities=16% Similarity=0.204 Sum_probs=163.4
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEE
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS 286 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~ 286 (500)
..+++.++.|+..|.+-.+|..+++....+.- ...|.++.|-.+..+++..+..-+.+||- .|..+.-++.+. .|..
T Consensus 138 trnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHClk~~~-~v~r 214 (545)
T KOG1272|consen 138 TRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCLKRHI-RVAR 214 (545)
T ss_pred cCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeehhhcC-chhh
Confidence 34677899999999999999999887766542 44677888877777777888889999994 455555554432 2333
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l 366 (500)
+.|-|- --.|++++..|.++.-|+..++. ...+....+.+..+
T Consensus 215 LeFLPy------------------------------------HfLL~~~~~~G~L~Y~DVS~Gkl-Va~~~t~~G~~~vm 257 (545)
T KOG1272|consen 215 LEFLPY------------------------------------HFLLVAASEAGFLKYQDVSTGKL-VASIRTGAGRTDVM 257 (545)
T ss_pred hcccch------------------------------------hheeeecccCCceEEEeechhhh-hHHHHccCCccchh
Confidence 333221 12477888899999888766543 23333334567778
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
+-+|-...+-+|...|+|.+|.....+.+..+-.|.++|.++ ++.++|+++|+
T Consensus 258 ~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si---------------------------Av~~~G~YMaT 310 (545)
T KOG1272|consen 258 KQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI---------------------------AVDRGGRYMAT 310 (545)
T ss_pred hcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE---------------------------EECCCCcEEee
Confidence 888988889999999999999999988887777899999888 55899999999
Q ss_pred EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++.|..|+|||++.-..+.+... .-....+++|..| |..+|....|.||.
T Consensus 311 tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 311 TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWK 360 (545)
T ss_pred cccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeeeeh
Confidence 99999999999998664433322 1245677888654 45555555688885
No 235
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=9.2e-11 Score=114.30 Aligned_cols=206 Identities=17% Similarity=0.124 Sum_probs=125.2
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
..+.++|.. +.....+..+...+.+..|+||+. |+..+.+ ..|.+||+.+++.... ...........++|+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPD--- 250 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPD--- 250 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCC---
Confidence 457777764 333334446677888999999984 5544432 4599999988865432 222223345556654
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCE
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~ 374 (500)
+..+ ++.+.++...+|...........+..+........|+|||+.
T Consensus 251 ---------------------------------G~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~ 297 (427)
T PRK02889 251 ---------------------------------GRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRS 297 (427)
T ss_pred ---------------------------------CCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCE
Confidence 2334 356667776666543222233445555555677899999998
Q ss_pred EEEEeC-CCcEEEEeC--CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816 375 VASASF-DKSIKLWNG--TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (500)
Q Consensus 375 lasgs~-Dg~i~lwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~ 451 (500)
|+..+. +|...+|.+ .+++..... .+... ....+|||+|++|+..+.++
T Consensus 298 l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~---------------------------~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 298 IYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSY---------------------------NTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred EEEEecCCCCcEEEEEECCCCceEEEe-cCCCC---------------------------cCceEECCCCCEEEEEEccC
Confidence 886654 456666643 344321111 00000 01126899999999877654
Q ss_pred ---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 452 ---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 452 ---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
.|.+||+.+++......+ .......|+|||+.|+.++.++
T Consensus 350 g~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 350 GAFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred CcEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecC
Confidence 699999988765433222 2335789999999998877554
No 236
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.38 E-value=8.2e-10 Score=101.57 Aligned_cols=304 Identities=20% Similarity=0.301 Sum_probs=188.6
Q ss_pred ccEEEEEEcCCCCeEEEEeC---------------CCcEEEEeCCCCceeEEecCCCCC--EE-EEEEcCCCCEEEEEeC
Q 010816 109 EAVLSVAFSPDGRQLASGSG---------------DTTVRLWDLNTQTPMFKCTGHKNW--VL-CIAWSADGKHLVSGSK 170 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~---------------d~~i~iwd~~~~~~~~~~~~h~~~--v~-~v~~s~~~~~l~s~~~ 170 (500)
..|..+.|+|.+++|.|=+. ++.+.+||+.++..+..+.+...+ .. -+.|+-+.+++|=. .
T Consensus 72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v 150 (561)
T COG5354 72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V 150 (561)
T ss_pred CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence 45888999999999998643 235999999999988887766655 44 67888888777654 3
Q ss_pred CCeEEEEeCCCCCcccccccCcc-cceEEEEeeeeecCCCCceEE-----EEeCCCcEEEEECCCCeEEEEecCccccEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHK-KWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~-----s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~ 244 (500)
...+.++++ ++.....++..-. ..+....|+|.... ..|+ ..+.++.+++|.+..++.+.+-.--...-.
T Consensus 151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~---~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~ 226 (561)
T COG5354 151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNH---DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV 226 (561)
T ss_pred cCeEEEEec-CCccccCchhhccccceeeEEecCCCCC---ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc
Confidence 457899987 5443332222222 45666777776422 2233 257788999999986655443211111222
Q ss_pred EEEeCCCCe-E-E---EEe-------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 245 CVKWGGDGV-I-Y---TGS-------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 245 ~~~~~~~~~-l-~---t~~-------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
.+.|.+.|. | + +-. ....+.|++++. +.+........+|...++.|...
T Consensus 227 qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e-~~i~V~~~~~~pVhdf~W~p~S~------------------ 287 (561)
T COG5354 227 QLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE-RSIPVEKDLKDPVHDFTWEPLSS------------------ 287 (561)
T ss_pred EEEEecCCceEEEEEEEeeecccceeccceEEEEeecc-cccceeccccccceeeeecccCC------------------
Confidence 355655441 1 1 111 124567777653 33333334566788887766420
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeC
Q 010816 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNG 389 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~ 389 (500)
.--+++|-.+-.+.++|++.. ......+..-+.+.|||.+++++.++.| |.|-+||.
T Consensus 288 ----------------~F~vi~g~~pa~~s~~~lr~N----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~ 347 (561)
T COG5354 288 ----------------RFAVISGYMPASVSVFDLRGN----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDP 347 (561)
T ss_pred ----------------ceeEEecccccceeecccccc----eEEecCCcccccccccCcccEEEEecCCccccceEEecc
Confidence 112445566777777776532 1222333445678899999999998887 57999997
Q ss_pred CCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE------CCCcEEEEECCCcc
Q 010816 390 TTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS------KDSTLKVWDIRTQK 462 (500)
Q Consensus 390 ~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s------~d~~v~iwd~~~~~ 462 (500)
.....+. .+.+... +...|+||++++.+.- .|..|+|||+...+
T Consensus 348 ~~rf~~~~~~~~~n~-----------------------------s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 348 AGRFKVAGAFNGLNT-----------------------------SYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred CCceEEEEEeecCCc-----------------------------eEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 6543322 3332211 1125899999988764 37889999986544
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
.. +.+.+.|.|.|++.-+.+.+.
T Consensus 399 ~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 399 VF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred hh--------hhhhccccCCcccceeeccCC
Confidence 32 456778888887766665554
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=4.2e-10 Score=110.27 Aligned_cols=203 Identities=15% Similarity=0.109 Sum_probs=127.9
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe---CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
..|.++|..... ...+..|...+.+..|++||. |+..+ .+..|.+||+.+++.. .+......+....++|+.
T Consensus 182 ~~l~~~d~dg~~-~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG-- 257 (435)
T PRK05137 182 KRLAIMDQDGAN-VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDG-- 257 (435)
T ss_pred eEEEEECCCCCC-cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCC--
Confidence 378888875443 344556778899999999984 55444 3468999999887653 233333344455555542
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
..+ ++.+.++. |++||+... ....+..+........|+|||
T Consensus 258 ----------------------------------~~la~~~~~~g~~~Iy~~d~~~~--~~~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 258 ----------------------------------RKVVMSLSQGGNTDIYTMDLRSG--TTTRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred ----------------------------------CEEEEEEecCCCceEEEEECCCC--ceEEccCCCCccCceeEcCCC
Confidence 233 45555554 666776543 234455666667788999999
Q ss_pred CEEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 373 QWVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 373 ~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
+.|+..+. +| .|++||+.+++...... +.+.. ....|+|+|+.|+..+.
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~---------------------------~~~~~SpdG~~ia~~~~ 353 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRY---------------------------STPVWSPRGDLIAFTKQ 353 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcc---------------------------cCeEECCCCCEEEEEEc
Confidence 99887764 33 58888876655432221 11111 11268999999988765
Q ss_pred C---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 450 D---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 450 d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+ ..|.+||+.++.. ..+.. ...+....|+|||+.|+..+.+
T Consensus 354 ~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 354 GGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred CCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEcc
Confidence 4 3688888765543 22221 2245678999999998776543
No 238
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.35 E-value=2.1e-10 Score=98.28 Aligned_cols=152 Identities=28% Similarity=0.439 Sum_probs=103.3
Q ss_pred EEEEcCCCCeEEEEeC----------CCcEEEEeCCC-CceeEEec-CCCCCEEEEEEcCCCCEEEE--EeCCCeEEEEe
Q 010816 113 SVAFSPDGRQLASGSG----------DTTVRLWDLNT-QTPMFKCT-GHKNWVLCIAWSADGKHLVS--GSKAGELQCWD 178 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~----------d~~i~iwd~~~-~~~~~~~~-~h~~~v~~v~~s~~~~~l~s--~~~d~~i~~wd 178 (500)
.+.|+|+|++|+.-.. -+...||.++. +.+...+. ...++|.+++|+|+|+.+|. |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 5789999987764322 23455665532 22333332 23457999999999998765 44678999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC---CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I 254 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~---dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l 254 (500)
++ ++... .-+...++.+.|+|. ++.+++++. .|.+.+||.++.+.+..... ..++.++|+|+|. +
T Consensus 90 ~~-~~~i~---~~~~~~~n~i~wsP~-----G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~--~~~t~~~WsPdGr~~ 158 (194)
T PF08662_consen 90 VK-GKKIF---SFGTQPRNTISWSPD-----GRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH--SDATDVEWSPDGRYL 158 (194)
T ss_pred Cc-ccEeE---eecCCCceEEEECCC-----CCEEEEEEccCCCcEEEEEECCCCEEeecccc--CcEEEEEEcCCCCEE
Confidence 96 33322 223456778999884 457777764 46799999998888776543 3478999999984 5
Q ss_pred EEEe------CCCeEEEEeCCCCeeEEE
Q 010816 255 YTGS------QDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 255 ~t~~------~dg~i~lwd~~~~~~~~~ 276 (500)
++++ .|+.++||+. +|+.+..
T Consensus 159 ~ta~t~~r~~~dng~~Iw~~-~G~~l~~ 185 (194)
T PF08662_consen 159 ATATTSPRLRVDNGFKIWSF-QGRLLYK 185 (194)
T ss_pred EEEEeccceeccccEEEEEe-cCeEeEe
Confidence 5544 3789999997 4665543
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.30 E-value=2.6e-09 Score=93.00 Aligned_cols=328 Identities=19% Similarity=0.316 Sum_probs=179.0
Q ss_pred ccEEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCccc
Q 010816 109 EAVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 109 ~~V~~~~~sp~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~ 186 (500)
+.|.-+.|..|..++. ....|+.|.+|++...+-...+.....++.+++|||||+.+ .+...|-.|.+|.+.+.+...
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~ 128 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL 128 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence 5677788888876654 45688999999998776666666677889999999999654 566779999999998765432
Q ss_pred ccccCcccceEEEEeeeeec------CCCCceE---------------------EEE---e-CCCcEEEEECCCCeEEEE
Q 010816 187 NPLSGHKKWITGISWEPVHL------NAPCRRF---------------------VSA---S-KDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~------~~~~~~~---------------------~s~---s-~dg~v~iwd~~~~~~~~~ 235 (500)
+.-.+..+.+++|+|... ..+|..+ .+| + .+..+.+||--..-.+..
T Consensus 129 --~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 129 --LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred --ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence 222233445666655210 0011100 011 1 223456676433222211
Q ss_pred ecCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 236 LSGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 236 ~~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
. .-...+..++|+| +..|+.|+.|+.+|+-+--+=+....+- |-..+..-... .+. .+.-
T Consensus 207 Y-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~efl-hl~s~~dp~~~---~~~--------------ke~~ 267 (447)
T KOG4497|consen 207 Y-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFL-HLCSYHDPTLH---LLE--------------KETF 267 (447)
T ss_pred e-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhc-cchhccCchhh---hhh--------------hhhc
Confidence 1 1124577788998 4467789999999886533222211110 11001000000 000 0000
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC-------CC------CCCceeeecccCcEEEEEECCCCCEEEEEeC-
Q 010816 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPA-------VS------KQPKTRMTGHQQLVNHVYFSPDGQWVASASF- 380 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~-------~~------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~- 380 (500)
.........+...+.+ -...+|... .. ..+..........+.-++||+|..++|+-..
T Consensus 268 ~~~ql~~~cLsf~p~~--------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 268 SIVQLLHHCLSFTPTD--------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK 339 (447)
T ss_pred chhhhcccccccCCCc--------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence 0000000000000000 000111100 00 0011111122345778999999999998643
Q ss_pred -CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 381 -DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 381 -Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
-+.+.+||++..++..++.. ..+|. ...|.|....|+.......+++|...
T Consensus 340 ~PnalW~Wdlq~l~l~avLiQ-k~pir---------------------------af~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 340 YPNALWLWDLQNLKLHAVLIQ-KHPIR---------------------------AFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred CCceEEEEechhhhhhhhhhh-cccee---------------------------EEEeCCCCceEEEEcCCceEEEEcCC
Confidence 36799999987765433321 12222 22578888777777666779999877
Q ss_pred CccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 460 TQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 460 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
....+..- +..=.|..+.|.-+|..|+-.|.|.-
T Consensus 392 g~~~V~vP-~~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 392 GPRVVGVP-KKGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CceEEecC-CCCceeeeEEecCCCcEEEEEcCCce
Confidence 65554432 22235889999999999999999863
No 240
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.30 E-value=5.7e-10 Score=97.62 Aligned_cols=248 Identities=17% Similarity=0.267 Sum_probs=166.4
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-Ee-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
+...+.||.+.|.+...-|-..-+++.+.|.++|||--.+..+.. .+ ..-..+++++.+.++...|+.|-..|++.-+
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef 95 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEF 95 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence 345578999999999999999999999999999999533221111 11 1224678999999999999999999998887
Q ss_pred eCCCC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--cEEEEEeCCCC
Q 010816 178 DPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL--AVTCVKWGGDG 252 (500)
Q Consensus 178 d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~ 252 (500)
.+..- .........|...+..+-|.- ....+++.+.|..+.---.+.+..+ .++.- .-+++.+.-.
T Consensus 96 s~sedfnkm~~~r~~~~h~~~v~~~if~~-----~~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t~~~~d~~- 166 (404)
T KOG1409|consen 96 ALSEDFNKMTFLKDYLAHQARVSAIVFSL-----THEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPASALQFDAL- 166 (404)
T ss_pred EhhhhhhhcchhhhhhhhhcceeeEEecC-----CceeEEEeccccceEEEeeccCCcc---cceEeeccCCCCceeeE-
Confidence 65321 111223456777887776643 3356777787765532222222111 01100 0001111101
Q ss_pred eEEEEeCCCeEEEEeC--CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 253 VIYTGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
..+.|...|.|..-.+ ..-..+..+.+|...+.++.+.+. ..
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~------------------------------------~~ 210 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG------------------------------------QR 210 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC------------------------------------Cc
Confidence 2334444444433322 233456777888888888887653 35
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
.+.+|+.|..+.+||+-........+.+|.+.|..+..-+-.+.|.+++.||.|-+|+.+-.
T Consensus 211 ~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 211 LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 78999999999999998777778888999999999999888899999999999999997643
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.5e-10 Score=105.96 Aligned_cols=202 Identities=21% Similarity=0.288 Sum_probs=142.8
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeecCCc---eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
+++....||.+|+||...++..+.+....+ ...+..+. +.. +. + ..+....... ..+....
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~----L~~---~~------s--~~k~~~~~~~-~~~s~~t 70 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG----LSA---DY------S--PMKWLSLEKA-KKASLDT 70 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE----EEe---cc------c--hHHHHhHHHH-hhccCCc
Confidence 677888999999999999988777653221 11111111 000 00 0 1111111111 1122334
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
..++-|...|.|.+++....+...... ..|.+.|+++.++.+-..|.+++.|..+..|+..+++.++.+++....+.++
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceE
Confidence 567888899999999976544322222 4789999999999999999999999999999999999998888766555444
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCC-----C
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD-----G 483 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d-----g 483 (500)
..+|||..|++|+. .|++||+++++.+..++||.+.|.+++|..+ |
T Consensus 151 ---------------------------~is~D~~~l~~as~--~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G 201 (541)
T KOG4547|consen 151 ---------------------------CISPDGKILLTASR--QIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIG 201 (541)
T ss_pred ---------------------------EEcCCCCEEEeccc--eEEEEEccCceEEEEecCCCcceEEEEEEEecccccc
Confidence 45899999999884 6999999999999999999999999999877 5
Q ss_pred CEEE-EEeCCCcEEEec
Q 010816 484 EKVA-SGGKDRVLKLWM 499 (500)
Q Consensus 484 ~~l~-s~~~D~~v~iW~ 499 (500)
+++. +...+.-+-+|.
T Consensus 202 ~~vLssa~~~r~i~~w~ 218 (541)
T KOG4547|consen 202 KYVLSSAAAERGITVWV 218 (541)
T ss_pred ceeeeccccccceeEEE
Confidence 6554 445566666663
No 242
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.28 E-value=3.9e-11 Score=124.98 Aligned_cols=246 Identities=16% Similarity=0.243 Sum_probs=153.1
Q ss_pred eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 127 SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 127 ~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..++...-|..+....+ .+.+-..|.++.=+|...+-+||+.||.++.|....+..+...-.+....|+.+.|+.
T Consensus 2187 n~~~~~~tq~~~~~~~~--~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~--- 2261 (2439)
T KOG1064|consen 2187 NLPWLGSTQTSRGASVM--IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNH--- 2261 (2439)
T ss_pred cCCccccceecccceeE--eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcc---
Confidence 33444444444332222 2334566888888888889999999999999998766544332222235555555433
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEE
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNS 286 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~ 286 (500)
.++.+..+..||.+-+|.+. .+.....+-|+...+...|-. ..+++++
T Consensus 2262 --qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~-s~~~tag---------------------------- 2309 (2439)
T KOG1064|consen 2262 --QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG-SLLATAG---------------------------- 2309 (2439)
T ss_pred --cCCceeeeccCCceeecccC-CcceeccccCCccccceeeee-hhhhccc----------------------------
Confidence 34566667777777777665 222333333444433333322 1122211
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l 366 (500)
..+.++.+.+||..........-..|...++++
T Consensus 2310 -----------------------------------------------~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l 2342 (2439)
T KOG1064|consen 2310 -----------------------------------------------RSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVL 2342 (2439)
T ss_pred -----------------------------------------------cCCCCCcccchhcccCcccceeeeecCCCceEE
Confidence 023455666666433322222337899999999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
++-|..++|++|+.+|.|++||++..++..+++. +. ...++++
T Consensus 2343 ~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------------~~-~~~~f~~ 2385 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------------LD-TREYFVT 2385 (2439)
T ss_pred EEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------------hh-hhheeec
Confidence 9999999999999999999999988776655442 23 4568999
Q ss_pred EECCCcEEEEECCCccccccccC-c--cc--CE--EEEEEcCCCCEEEEEeCCCc
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPG-H--AD--EV--FAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~-h--~~--~V--~~l~~s~dg~~l~s~~~D~~ 494 (500)
|+..|.++||++....++..++. | .+ ++ ..+... ...+|.+||.|++
T Consensus 2386 ~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~-~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2386 GSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVG-QCNRIFSCGADGT 2439 (2439)
T ss_pred cCcccceEEEEccccchhhcCchhhcccchhhhcCceeeec-cCceEEEecCCCC
Confidence 99999999999988777766654 2 11 01 122222 3568999999974
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=9.7e-10 Score=107.55 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=125.2
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC---CCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
..|++||.... ....+..+...+.+..|++|+. |+..+. +..|.+||+.+++... +.........+.++|+
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpD--- 258 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPD--- 258 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCC---
Confidence 36888998543 3334555667788999999984 555553 3469999998776432 2222222234445443
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
+..+ ++.+.++ .|++||+.... ...+..+.......+|+|||
T Consensus 259 ---------------------------------G~~l~~~~s~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 259 ---------------------------------GRRLALTLSRDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred ---------------------------------CCEEEEEEeCCCCceEEEEECCCCC--eEECccCCCCccceEECCCC
Confidence 2233 3444444 58889876433 33445555556678999999
Q ss_pred CEEEEEeC-CCc--EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 373 QWVASASF-DKS--IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 373 ~~lasgs~-Dg~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
+.|+.++. +|. |+++|+.+++..... .+... ....+|+|+|++++..+.
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~---------------------------~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNY---------------------------NARASVSPDGKKIAMVHG 355 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEee-cCCCC---------------------------ccCEEECCCCCEEEEEEC
Confidence 98887764 444 666677666532211 11100 011378999999987764
Q ss_pred CC---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 450 DS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 450 d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++ .|.+||+.+++.. .+. +........|+|||++|+..+.+
T Consensus 356 ~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred CCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEec
Confidence 43 6999999887654 332 22234567999999998876654
No 244
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=7e-09 Score=96.51 Aligned_cols=319 Identities=17% Similarity=0.205 Sum_probs=172.0
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCC
Q 010816 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-----------AGELQCWDPQ 180 (500)
Q Consensus 112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-----------d~~i~~wd~~ 180 (500)
+-+.|||-|.+|+|--.- .|.+|--++-..+..+ .|. .|.-+.|||+.++|+|=+. -..++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEecc-ceeeecCccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 468999999999997554 4889965544333333 244 4889999999999998542 1579999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEE---
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG--- 257 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~--- 257 (500)
+|..... +..-.. ..+.|.-+.-+.+...++-... .+|.||+......+-.-.-.-..|....|+|.+.+++=
T Consensus 291 tG~lkrs-F~~~~~--~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtp 366 (698)
T KOG2314|consen 291 TGLLKRS-FPVIKS--PYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTP 366 (698)
T ss_pred ccchhcc-eeccCC--CccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcc
Confidence 9975432 111111 1112222222234445544443 67889987654332211112345667778887544321
Q ss_pred eCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 258 SQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 258 ~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
..+ ..+.+-.+.+++.+++..-+...-..+.+-..+...+...+... ... .
T Consensus 367 e~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~t-----------------------K~~---~ 420 (698)
T KOG2314|consen 367 ETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHT-----------------------KSK---V 420 (698)
T ss_pred cccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeec-----------------------ccc---c
Confidence 111 23444455554444433222111111111111111000000000 000 1
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCC-C---ceEEEEeCCcccEEE
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTT-G---KFVAVFRGHVGPVYQ 407 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~-~---~~~~~~~~h~~~v~~ 407 (500)
.+.--.+-|+.++....+.... .-...|...+|-|.|..+++-+.. .++.+|.+++ + +++..+..
T Consensus 421 ~g~f~n~eIfrireKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk------- 492 (698)
T KOG2314|consen 421 KGQFSNLEIFRIREKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK------- 492 (698)
T ss_pred cceEeeEEEEEeeccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc-------
Confidence 1112245566665544444332 345678899999999888765442 4677776653 1 11111110
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE---CCCcEEEEECCCcccccc-ccCcccCEEEEEEcCCC
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS---KDSTLKVWDIRTQKLKQD-LPGHADEVFAVDWSPDG 483 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s---~d~~v~iwd~~~~~~~~~-~~~h~~~V~~l~~s~dg 483 (500)
.....+.|+|.|++++.+. ..|.+.++|+.-..+... .+.|. .-+.+.|.|.|
T Consensus 493 ----------------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtG 549 (698)
T KOG2314|consen 493 ----------------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTG 549 (698)
T ss_pred ----------------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCC
Confidence 1112236899999998764 568899999874333222 23353 34678999999
Q ss_pred CEEEEEeCCCc
Q 010816 484 EKVASGGKDRV 494 (500)
Q Consensus 484 ~~l~s~~~D~~ 494 (500)
+++++++.-.+
T Consensus 550 RYvvT~ss~wr 560 (698)
T KOG2314|consen 550 RYVVTSSSSWR 560 (698)
T ss_pred CEEEEeeehhh
Confidence 99999987543
No 245
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.26 E-value=5.7e-10 Score=97.57 Aligned_cols=283 Identities=19% Similarity=0.355 Sum_probs=167.2
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----ccccccCcc------------cceEEEEeeeeecCCCCceE
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----SGNPLSGHK------------KWITGISWEPVHLNAPCRRF 213 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~ 213 (500)
..-|.+|.|..+|.+||+|..+|.|.++.-..... ....+..|. ..|..+.|.+.. ....|
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~---n~a~F 101 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDG---NLAEF 101 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCC---CccEE
Confidence 35688999999999999999999999996543221 111222332 356777887643 23478
Q ss_pred EEEeCCCcEEEEECCCCeEEEE-----ecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEE
Q 010816 214 VSASKDGDARIWDVSLRKCVIC-----LSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSL 287 (500)
Q Consensus 214 ~s~s~dg~v~iwd~~~~~~~~~-----~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~ 287 (500)
+....|.+|++|.+........ ..+....++++.. .+.+..|-.+.. .+.+.+ ..|.--|.++
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~-----p~~~~~~~~vea------~prRv~aNaHtyhiNSI 170 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL-----PVEGRHDLEVEA------SPRRVYANAHTYHINSI 170 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeec-----eeeccccceeee------eeeeeccccceeEeeee
Confidence 8899999999999865432110 0011111222111 111111111100 111111 2345556666
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce-------eeeccc
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-------RMTGHQ 360 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~-------~~~~h~ 360 (500)
.+..+. + ...+++|=.|.+|.+....+... .+..-.
T Consensus 171 S~NsD~------------------------------------E-t~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLt 213 (433)
T KOG1354|consen 171 SVNSDK------------------------------------E-TFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELT 213 (433)
T ss_pred eecCcc------------------------------------c-eEeeccceeeeeccccccCCceeEEEccccCHHHHH
Confidence 655432 2 34456778899998765433211 222234
Q ss_pred CcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEE----EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceee
Q 010816 361 QLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVA----VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLY 435 (500)
Q Consensus 361 ~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (500)
..|++..|+|. .++++-++.-|+|++-|++...+.. .+.....+ .+..-....-.+++.+
T Consensus 214 eVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp---------------~~rsffseiIsSISDv 278 (433)
T KOG1354|consen 214 EVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP---------------SSRSFFSEIISSISDV 278 (433)
T ss_pred HHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC---------------cchhhHHHHhhhhhce
Confidence 56888999995 5788888999999999998644321 11111111 1111111222345667
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCC-ccccccccCc------------ccCE---EEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 436 SWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGH------------ADEV---FAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h------------~~~V---~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|+++|+++++-.. -+|++||+.. .+.+...+-| ++.| +.++|+.++.++.|||-....+++.
T Consensus 279 KFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 279 KFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred EEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEec
Confidence 79999999987543 4799999843 3444443333 2333 5689999999999999999998875
No 246
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.26 E-value=2.5e-09 Score=100.32 Aligned_cols=171 Identities=22% Similarity=0.359 Sum_probs=126.2
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCcccc--cccCcccceEEEEee------ee---------ecCCCCceEEEEeCCCcE
Q 010816 160 ADGKHLVSGSKAGELQCWDPQTGKPSGN--PLSGHKKWITGISWE------PV---------HLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 160 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~~v~~~~~~------~~---------~~~~~~~~~~s~s~dg~v 222 (500)
|-..++|....||.+++||..+++.... +.....+.-+...|. |. ....+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4467899999999999999988764321 222222333444443 10 111233457788899999
Q ss_pred EEEECCCCeEEEEec--CccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 223 RIWDVSLRKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
.+|++..++....+. .|...|.++.++.+ +.|++++.|+.+..|+....+.
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-------------------------- 136 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-------------------------- 136 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee--------------------------
Confidence 999999888766654 68899999988765 5799999999999998765433
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS 379 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs 379 (500)
+++|.. .+..+.+++++|||..|++++
T Consensus 137 -----------------------------------------~~~~~~------------~~~~~~sl~is~D~~~l~~as 163 (541)
T KOG4547|consen 137 -----------------------------------------IRIWKE------------QKPLVSSLCISPDGKILLTAS 163 (541)
T ss_pred -----------------------------------------eeeecc------------CCCccceEEEcCCCCEEEecc
Confidence 233432 223467889999999999887
Q ss_pred CCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816 380 FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 380 ~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~ 411 (500)
+.|++||.++++.+..|.||.++|.++.|.
T Consensus 164 --~~ik~~~~~~kevv~~ftgh~s~v~t~~f~ 193 (541)
T KOG4547|consen 164 --RQIKVLDIETKEVVITFTGHGSPVRTLSFT 193 (541)
T ss_pred --ceEEEEEccCceEEEEecCCCcceEEEEEE
Confidence 579999999999999999999999999874
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=2.9e-10 Score=113.06 Aligned_cols=196 Identities=23% Similarity=0.339 Sum_probs=146.5
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----VLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.+.|....+.-+.+.++.+..++.+.|||......+......+.. ..-+.++++.-++++|+.-+.|.+|++. ..
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~-~d 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH-ED 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-cc
Confidence 445555667778889999999999999999876555444332221 2223456677789999999999999987 32
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEeCCCe
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQDCT 262 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~~dg~ 262 (500)
.....+.+|++.+.++.|+ .+++++++.|.|+++|+|++.+++... +.-+|+..|..+.|.++ .+++++.|-+
T Consensus 166 n~p~~l~GHeG~iF~i~~s-----~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n-~i~t~gedct 239 (967)
T KOG0974|consen 166 NKPIRLKGHEGSIFSIVTS-----LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN-RIITVGEDCT 239 (967)
T ss_pred CCcceecccCCceEEEEEc-----cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-eeEEeccceE
Confidence 2223578999999999875 367899999999999999999887765 56699999999999987 9999999999
Q ss_pred EEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 263 IKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
.++|+.. +..+..+.+|. .-+..++.++. .-..++++.|+++
T Consensus 240 crvW~~~-~~~l~~y~~h~g~~iw~~~~~~~------------------------------------~~~~vT~g~Ds~l 282 (967)
T KOG0974|consen 240 CRVWGVN-GTQLEVYDEHSGKGIWKIAVPIG------------------------------------VIIKVTGGNDSTL 282 (967)
T ss_pred EEEEecc-cceehhhhhhhhcceeEEEEcCC------------------------------------ceEEEeeccCcch
Confidence 9999653 44455555553 34555655543 2246788888888
Q ss_pred EEEcCC
Q 010816 342 FLWEPA 347 (500)
Q Consensus 342 ~~wd~~ 347 (500)
++|+..
T Consensus 283 k~~~l~ 288 (967)
T KOG0974|consen 283 KLWDLN 288 (967)
T ss_pred hhhhhh
Confidence 888753
No 248
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.24 E-value=1.7e-08 Score=93.11 Aligned_cols=322 Identities=16% Similarity=0.167 Sum_probs=180.4
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---------------
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA--------------- 171 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d--------------- 171 (500)
-.-++..+.+||.|.+|++.... .|.+|.-.....+..+. | ..|..+.|+|++++|.+=+..
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 34578889999999999987544 49999877666444443 3 358999999999999885433
Q ss_pred CeEEEEeCCCCCcccccccCcccc--e-EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---cccEEE
Q 010816 172 GELQCWDPQTGKPSGNPLSGHKKW--I-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTC 245 (500)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~--v-~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~v~~ 245 (500)
..+.+||..+|..+.. +.+-... . .-+.|+-.+ .-+.++ ....+.|+++ ++... ...-+ ...|..
T Consensus 108 n~~~vwd~~sg~iv~s-f~~~~q~~~~Wp~~k~s~~D--~y~ARv----v~~sl~i~e~-t~n~~-~~p~~~lr~~gi~d 178 (561)
T COG5354 108 NNVFVWDIASGMIVFS-FNGISQPYLGWPVLKFSIDD--KYVARV----VGSSLYIHEI-TDNIE-EHPFKNLRPVGILD 178 (561)
T ss_pred CceeEEeccCceeEee-ccccCCcccccceeeeeecc--hhhhhh----ccCeEEEEec-CCccc-cCchhhccccceee
Confidence 3589999998865432 1111111 0 122333211 111223 2346888886 32211 11111 234566
Q ss_pred EEeCCCC---eEE-----EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHH
Q 010816 246 VKWGGDG---VIY-----TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 246 ~~~~~~~---~l~-----t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
..|+|.+ .|+ ..+.++++++|.+..++.+.+-.--...-..+.+.+.+. +..-...+..
T Consensus 179 FsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~k------------ 246 (561)
T COG5354 179 FSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTK------------ 246 (561)
T ss_pred EEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeee------------
Confidence 6677652 222 256778888998876655443211110011111111110 0000000000
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF 394 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~ 394 (500)
. +... -...+++|+++.....+.. .+-.++|...+|.|.++.+++.+ .+..+.++|++.. +
T Consensus 247 ---------s-nKsy----fgesnLyl~~~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 247 ---------S-NKSY----FGESNLYLLRITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred ---------c-ccce----eccceEEEEeeccccccee--ccccccceeeeecccCCceeEEecccccceeecccccc-e
Confidence 0 0000 0123566776653222222 25578899999999887776554 6788889988654 2
Q ss_pred EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC---CcEEEEECCCccccc-cccCc
Q 010816 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQ-DLPGH 470 (500)
Q Consensus 395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~-~~~~h 470 (500)
...+ ..++-+. ..|||.+++++.++.| |.|-+||....-... .+.+-
T Consensus 310 ~~~~--Pe~~rNT---------------------------~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~ 360 (561)
T COG5354 310 RFYF--PEQKRNT---------------------------IFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL 360 (561)
T ss_pred EEec--CCccccc---------------------------ccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC
Confidence 2211 1111111 1479999999998876 679999976644332 44443
Q ss_pred ccCEEEEEEcCCCCEEEEEeC------CCcEEEecC
Q 010816 471 ADEVFAVDWSPDGEKVASGGK------DRVLKLWMG 500 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~~ 500 (500)
+ -.-+.|+||++++.+... |..|+||+.
T Consensus 361 n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 361 N--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred C--ceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence 2 234689999999877643 778999973
No 249
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=99.23 E-value=4.9e-11 Score=80.79 Aligned_cols=62 Identities=34% Similarity=0.599 Sum_probs=57.5
Q ss_pred eEEEEEECCCC--CcCCCcEeecCCCCHHHHHHHHHHHh-cCCCCCceeEEecCeeeecchhhhH
Q 010816 10 NVMCLLTDPEG--NPLGAPMYFPQNAGPQQLSQIVNKLL-NNEEKLPYAFYISDHELLVPLGSYL 71 (500)
Q Consensus 10 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
||+++|.++++ .+++.|+.+|.++.+.+|+.++|+|+ ..+++.||+|++++.+++.+|++++
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~~l 65 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEEPVPFDFLINGEELRTSLEEHL 65 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCCCCcEEEEECCEEeechHHHhC
Confidence 68999998876 89999999999999999999999999 7888999999999999999998864
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.4e-09 Score=96.22 Aligned_cols=295 Identities=19% Similarity=0.251 Sum_probs=174.1
Q ss_pred cEEEEEEcCCCCeEEEE-----eCC-----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 110 AVLSVAFSPDGRQLASG-----SGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~-----~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
.+.++.|+|-|.+|.|= ..+ ..+++|+++++.....+....+.-.+..|+.|..+.| --..+.+++|+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dEsl~a-rlv~nev~f~~~ 153 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNGWVPQFSIDESLAA-RLVSNEVQFYDL 153 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcCcccccccchhhhh-hhhcceEEEEec
Confidence 67899999999988753 223 3577999998544433332222225889998865332 223568999998
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEE-----EEeCCCcEEEEECCCCeE-----EEEecCccccEEEEEeC
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-----SASKDGDARIWDVSLRKC-----VICLSGHTLAVTCVKWG 249 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----s~s~dg~v~iwd~~~~~~-----~~~~~~h~~~v~~~~~~ 249 (500)
...+.... .-|...++...++|... ...++ .+|.-+.|+||....... .++|.. ..--.+.|+
T Consensus 154 ~~f~~~~~--kl~~~~i~~f~lSpgp~---~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFk--adkvqm~WN 226 (566)
T KOG2315|consen 154 GSFKTIQH--KLSVSGITMLSLSPGPE---PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFK--ADKVQMKWN 226 (566)
T ss_pred CCccceee--eeeccceeeEEecCCCC---CceEEEEccCCCCCCcEEEEeccccccccchhhhccccc--cceeEEEec
Confidence 76443322 22455666666666411 11222 246667899998762211 011110 111234565
Q ss_pred CCC--eEEEEe--CC---------CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 250 GDG--VIYTGS--QD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 250 ~~~--~l~t~~--~d---------g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
.-| +|+.++ -| .++++.++. |.....--....+|.++.+++... .
T Consensus 227 ~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~-----------E---------- 284 (566)
T KOG2315|consen 227 KLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGR-----------E---------- 284 (566)
T ss_pred cCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCC-----------E----------
Confidence 433 333332 22 356666655 222221122356788888876531 0
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCc
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGK 393 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~ 393 (500)
--++-|-....+.++|++-. +... -.++.-+++-|+|.|++|+.++.+ |.+-+||+.+.+
T Consensus 285 -------------F~VvyGfMPAkvtifnlr~~--~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K 347 (566)
T KOG2315|consen 285 -------------FAVVYGFMPAKVTIFNLRGK--PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK 347 (566)
T ss_pred -------------EEEEEecccceEEEEcCCCC--EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh
Confidence 01334555667888886531 2222 224556789999999999998876 789999999887
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC------CCcEEEEECCCccccccc
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK------DSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~------d~~v~iwd~~~~~~~~~~ 467 (500)
++..++.... +.+.|+|||++++++.. |+.++||+.....+....
T Consensus 348 ~i~~~~a~~t-----------------------------t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~ 398 (566)
T KOG2315|consen 348 LIAKFKAANT-----------------------------TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKM 398 (566)
T ss_pred hccccccCCc-----------------------------eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhh
Confidence 7766554322 22379999999999874 788999998654433221
Q ss_pred cCcccCEEEEEEcCC
Q 010816 468 PGHADEVFAVDWSPD 482 (500)
Q Consensus 468 ~~h~~~V~~l~~s~d 482 (500)
- ..+.+.+.|-|-
T Consensus 399 f--~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 399 F--KSELLQVEWRPF 411 (566)
T ss_pred h--hHhHhheeeeec
Confidence 1 115778888753
No 251
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=9.1e-11 Score=108.65 Aligned_cols=214 Identities=22% Similarity=0.370 Sum_probs=146.3
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
.+.||+..|..++--.+.+-+++++.|++|++|.++. ..+.++.+.|+.+|.++.|-.+-++++++ ||.|.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcce
Confidence 4679999999998878888899999999999998753 34677888999999999999988888776 89999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (500)
+||+--|+...+. -|.|.+ +....|.|+.-.....++
T Consensus 808 lWDPFigr~Laq~-----------~dapk~--------------------------------~a~~~ikcl~nv~~~ili 844 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQM-----------EDAPKE--------------------------------GAGGNIKCLENVDRHILI 844 (1034)
T ss_pred eecccccchhHhh-----------hcCccc--------------------------------CCCceeEecccCcchhee
Confidence 9998766543221 111110 001112222211112333
Q ss_pred E-EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 256 T-GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 256 t-~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
. ++...+|+++|.+.+....+++.
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kV------------------------------------------------------- 869 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKV------------------------------------------------------- 869 (1034)
T ss_pred eeccchhhheeeecccccceeeEEe-------------------------------------------------------
Confidence 3 47788999999877654433221
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
... .+....+++++..+.|+++|.+-..|.|-+.|.++|+.+..++--+-...++
T Consensus 870 ------------cna-------~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllql------ 924 (1034)
T KOG4190|consen 870 ------------CNA-------PGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQL------ 924 (1034)
T ss_pred ------------ccC-------CCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhh------
Confidence 000 1122447889999999999999999999999999999887665332222221
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE-EECCCccc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV-WDIRTQKL 463 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i-wd~~~~~~ 463 (500)
+ .|..+.|+....|.++-+ |....+..
T Consensus 925 ---------------------a-apsdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 925 ---------------------A-APSDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred ---------------------c-CchhHHHHhhcccceeEeeehhcCCee
Confidence 1 467778888888888888 87655443
No 252
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.17 E-value=1.4e-08 Score=99.54 Aligned_cols=232 Identities=19% Similarity=0.222 Sum_probs=129.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
..|.++|...... ..+..+...+.+..|+|||++|+.++.+ ..|.+||+.+++... +.
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--~~---------------- 230 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--VA---------------- 230 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--ee----------------
Confidence 3577888764433 3455567778999999999999877644 367777776553210 00
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCC--eEEEEeCCCCeeEEEeecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDC--TIKVWETTQGKLIRELKGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~ 282 (500)
.+...+.+..|++|+. | ++.+.++ .|.+||+.++...+ +..+..
T Consensus 231 -------------------------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~ 278 (417)
T TIGR02800 231 -------------------------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPG 278 (417)
T ss_pred -------------------------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCC
Confidence 1111223355666652 3 3344433 57778877664332 222222
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CC--eEEEEcCCCCCCCceeeecc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~--~v~~wd~~~~~~~~~~~~~h 359 (500)
......++++ +..++..+. ++ .|+++|..... ...+..+
T Consensus 279 ~~~~~~~s~d------------------------------------g~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~ 320 (417)
T TIGR02800 279 IDTEPSWSPD------------------------------------GKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFR 320 (417)
T ss_pred CCCCEEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCC--EEEeecC
Confidence 2222233322 234444332 33 57777764332 2334444
Q ss_pred cCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 360 QQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
...+....|+|+|++|+.++.++ .|.+||+.++.... +..... ....+
T Consensus 321 ~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~----------------------------~~~p~ 371 (417)
T TIGR02800 321 GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGL----------------------------DESPS 371 (417)
T ss_pred CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCC----------------------------CCCce
Confidence 55667889999999999888876 78899987754321 111100 01126
Q ss_pred EcCCCCEEEEEECCC---cEEEEECCCccccccccCcccCEEEEEEc
Q 010816 437 WSADSRLLLSGSKDS---TLKVWDIRTQKLKQDLPGHADEVFAVDWS 480 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 480 (500)
|+|+|++|+.++.++ .+++.+.. ++....+..+.+.+..++|+
T Consensus 372 ~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~ws 417 (417)
T TIGR02800 372 FAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAWS 417 (417)
T ss_pred ECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCCC
Confidence 899999988877654 35555543 33334444444455555553
No 253
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.17 E-value=3.2e-08 Score=95.45 Aligned_cols=236 Identities=14% Similarity=0.104 Sum_probs=141.6
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~ 198 (500)
++..++.++.++.+.-+|..+++.+...... ..+.+.-.. .+..++.++.++.+..||.++|+....... .......
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~ 180 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR-VTPALTL 180 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc-CCCceee
Confidence 4677888889999999999998887654422 222211111 345777788899999999999875432111 0000000
Q ss_pred EE-eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-----cc-----cEE-EEEeCCCCeEEEEeCCCeEEEE
Q 010816 199 IS-WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-----TL-----AVT-CVKWGGDGVIYTGSQDCTIKVW 266 (500)
Q Consensus 199 ~~-~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-----~~-----~v~-~~~~~~~~~l~t~~~dg~i~lw 266 (500)
.. -.|.. ....++.+..++.+..+|.++++.+....-. .. .+. +... .++.++.++.+|.+..|
T Consensus 181 ~~~~sp~~---~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~ 256 (377)
T TIGR03300 181 RGSASPVI---ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAAL 256 (377)
T ss_pred cCCCCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEE
Confidence 00 01111 1236777888899999999988766543210 00 010 1111 25678889999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|..+|+.+....... ..... ..+..++.++.||.++.+|.
T Consensus 257 d~~tG~~~W~~~~~~--~~~p~--------------------------------------~~~~~vyv~~~~G~l~~~d~ 296 (377)
T TIGR03300 257 DLRSGRVLWKRDASS--YQGPA--------------------------------------VDDNRLYVTDADGVVVALDR 296 (377)
T ss_pred ECCCCcEEEeeccCC--ccCce--------------------------------------EeCCEEEEECCCCeEEEEEC
Confidence 999988765443110 00000 01346777888999999997
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~ 403 (500)
...+.......-......+... .+..|++++.||.|+++|..+|+.+..++.+..
T Consensus 297 ~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 297 RSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred CCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 6543221110000011111111 467889999999999999999999887775543
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.6e-08 Score=99.08 Aligned_cols=232 Identities=18% Similarity=0.182 Sum_probs=126.3
Q ss_pred cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (500)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (500)
.+.++|...... ..+..+...+.+..|+|||+.|+..+.+ + .|.+||+.+++... +.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--lt----------------- 258 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--VT----------------- 258 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--ec-----------------
Confidence 566777765543 2344567788999999999988876543 2 46666766543210 00
Q ss_pred CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCe--EEEEeCCCCeeEEEeecCCce
Q 010816 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCT--IKVWETTQGKLIRELKGHGHW 283 (500)
Q Consensus 208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~--i~lwd~~~~~~~~~~~~~~~~ 283 (500)
.+.++ .....|++||. | ++.+.++. |.++|+.+++.. .+..+...
T Consensus 259 ---------------------------~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~ 307 (448)
T PRK04792 259 ---------------------------SFPGI---NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAI 307 (448)
T ss_pred ---------------------------CCCCC---cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCC
Confidence 00111 12345676663 3 33455554 667787766543 33333333
Q ss_pred EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceeeeccc
Q 010816 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMTGHQ 360 (500)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~~~h~ 360 (500)
.....++++. ..++ ++..++ .++++|+.... ...+....
T Consensus 308 ~~~p~wSpDG------------------------------------~~I~f~s~~~g~~~Iy~~dl~~g~--~~~Lt~~g 349 (448)
T PRK04792 308 DTEPSWHPDG------------------------------------KSLIFTSERGGKPQIYRVNLASGK--VSRLTFEG 349 (448)
T ss_pred ccceEECCCC------------------------------------CEEEEEECCCCCceEEEEECCCCC--EEEEecCC
Confidence 3444455432 2333 332233 45555654332 22222222
Q ss_pred CcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
......+|+|||++|+..+.+ + .|.++|+.+++... +..... ....+|
T Consensus 350 ~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~----------------------------d~~ps~ 400 (448)
T PRK04792 350 EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRL----------------------------DESPSV 400 (448)
T ss_pred CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCC----------------------------CCCceE
Confidence 223456899999998876553 3 45566777765422 111000 001158
Q ss_pred cCCCCEEEEEECC-C--cEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 438 SADSRLLLSGSKD-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 438 s~~~~~l~s~s~d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
+|||+.|+..+.+ + .+++++. .++....+..+.+.+...+|+|
T Consensus 401 spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 401 APNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 9999988876644 3 3667776 4555566666666777888987
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.15 E-value=1.5e-08 Score=99.38 Aligned_cols=204 Identities=18% Similarity=0.185 Sum_probs=123.9
Q ss_pred CcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 220 GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 220 g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
..|.++|..... ...+..+...+.+..|++|+. |+.++.+ ..|++||+.+++..... .+...+..++++++.
T Consensus 170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg-- 245 (417)
T TIGR02800 170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDG-- 245 (417)
T ss_pred ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCCCccceEECCCC--
Confidence 357777775333 333445666788889999984 4444432 47999999887543322 222333445555442
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
..+ ++.+.++ .|++||+.... ...+..+........|+|||
T Consensus 246 ----------------------------------~~l~~~~~~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg 289 (417)
T TIGR02800 246 ----------------------------------SKLAVSLSKDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDG 289 (417)
T ss_pred ----------------------------------CEEEEEECCCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCC
Confidence 233 3444443 58888865432 23344444445567899999
Q ss_pred CEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 373 QWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 373 ~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
+.|+..+.. + .|+++|+.+++... +..+.... ....|+|+|++++.++.
T Consensus 290 ~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~~~---------------------------~~~~~spdg~~i~~~~~ 341 (417)
T TIGR02800 290 KSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGGYN---------------------------ASPSWSPDGDLIAFVHR 341 (417)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc---------------------------cCeEECCCCCEEEEEEc
Confidence 988776653 3 57888877665432 11111111 12368999999999888
Q ss_pred CC---cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 450 DS---TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 450 d~---~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
++ .|.+||+.++... .+... .......|+|||++|+.++.++
T Consensus 342 ~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~l~~~~~~~ 386 (417)
T TIGR02800 342 EGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRMILYATTRG 386 (417)
T ss_pred cCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCEEEEEEeCC
Confidence 76 7899998875442 22222 2234568999999998877654
No 256
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.15 E-value=4.9e-10 Score=107.33 Aligned_cols=295 Identities=24% Similarity=0.336 Sum_probs=181.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-ceeEEecCCCC--CEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-TPMFKCTGHKN--WVLCIAWSADG--KHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-~~~~~~~~h~~--~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+++.++.++|.|+-+|.++.-| +.|-|+... .+..-+ .|-. .|..+.|+|.. .+-+.......-.+|++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l-~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWL-HHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceee-eccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 45677889999999999887665 445565432 222111 2222 36677888753 34444445566778987643
Q ss_pred C--cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccccEEEEEeCC-CCeEEEEe
Q 010816 183 K--PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTLAVTCVKWGG-DGVIYTGS 258 (500)
Q Consensus 183 ~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~~v~~~~~~~-~~~l~t~~ 258 (500)
. .+...+.+|...++.+.|+|.+. ..+++++.|..+..||++... .+..+..-...-+.+.|+- ++.+++.+
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~p----dVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass 177 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHP----DVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS 177 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCC----cceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence 2 33345789999999999998654 479999999999999998754 3333333333445677763 45566777
Q ss_pred CCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 259 QDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 259 ~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
..+.|++||++.|. .+..+++|-..|..+++... ....+.+++.
T Consensus 178 hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~-----------------------------------~~s~~~s~~~ 222 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRF-----------------------------------KYSEIMSSSN 222 (1081)
T ss_pred cCCceEEEeccCCCcceEEecccceeeehHHHhhh-----------------------------------hhhhhcccCC
Confidence 88899999998774 56677776666655544321 1235788999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC--EEEE--E-------eCCCcEEEEeCCCC-ceEEEEeCCcccE
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ--WVAS--A-------SFDKSIKLWNGTTG-KFVAVFRGHVGPV 405 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~--~las--g-------s~Dg~i~lwd~~~~-~~~~~~~~h~~~v 405 (500)
|++|+.||-............-..+|..-.|-|-|. .+.- | --+.....|+..++ +.+..|.||...|
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V 302 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVV 302 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHH
Confidence 999999997544333222222233455555555332 2221 1 11222334554443 5688999998877
Q ss_pred EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
....+..- ..|..+ +.--.-+|++=|.|.++|+|-+..
T Consensus 303 ~eFlWR~r--------~e~~~d---------~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 303 LEFLWRKR--------KECDGD---------YDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred HHHhhhhc--------ccccCC---------CCccceeEEEeecCCceEeeeccH
Confidence 65433110 001100 111223799999999999998754
No 257
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=3.4e-08 Score=96.95 Aligned_cols=233 Identities=17% Similarity=0.183 Sum_probs=128.0
Q ss_pred cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (500)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (500)
.|.++|.+++.+ ..+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....
T Consensus 180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--l~~~~-------------- 242 (430)
T PRK00178 180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--ITNFE-------------- 242 (430)
T ss_pred EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--ccCCC--------------
Confidence 477778776544 3444567789999999999999876644 257777776654211 10000
Q ss_pred CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCC--eEEEEeCCCCeeEEEeecCCce
Q 010816 208 APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDC--TIKVWETTQGKLIRELKGHGHW 283 (500)
Q Consensus 208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg--~i~lwd~~~~~~~~~~~~~~~~ 283 (500)
..+....|+|||. |+ +.+.++ .|.+||+.+++..+ +..+...
T Consensus 243 ---------------------------------g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~ 288 (430)
T PRK00178 243 ---------------------------------GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAI 288 (430)
T ss_pred ---------------------------------CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCC
Confidence 1112345666652 32 333343 57777877665432 3322222
Q ss_pred EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCC--eEEEEcCCCCCCCceeeeccc
Q 010816 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDF--TMFLWEPAVSKQPKTRMTGHQ 360 (500)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~--~v~~wd~~~~~~~~~~~~~h~ 360 (500)
.....++++ +..++..+ .++ .|+++++..... ..+....
T Consensus 289 ~~~~~~spD------------------------------------g~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~ 330 (430)
T PRK00178 289 DTEPFWGKD------------------------------------GRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVG 330 (430)
T ss_pred cCCeEECCC------------------------------------CCEEEEEECCCCCceEEEEECCCCCE--EEeecCC
Confidence 333344443 22333333 233 466666543321 2222111
Q ss_pred CcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 361 QLVNHVYFSPDGQWVASASFD-K--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
.......|+|||++|+..+.+ + .|.+||+.+++....... .. .....|
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~---------------------------~~~p~~ 381 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SL---------------------------DESPSV 381 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CC---------------------------CCCceE
Confidence 223456899999999877653 3 588889887754221110 00 001268
Q ss_pred cCCCCEEEEEECC-C--cEEEEECCCccccccccCcccCEEEEEEcCC
Q 010816 438 SADSRLLLSGSKD-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 438 s~~~~~l~s~s~d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 482 (500)
+|||++++..+.+ + .+.++++.. ...+.+..+.+.+...+|+|-
T Consensus 382 spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 382 APNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 9999999877654 2 466667643 333445555566778888873
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=1.9e-08 Score=86.52 Aligned_cols=223 Identities=20% Similarity=0.325 Sum_probs=135.4
Q ss_pred EEEEeCCCcEEEEECCCCeEEEEecCc---ccc---EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeE--EEeecCCce
Q 010816 213 FVSASKDGDARIWDVSLRKCVICLSGH---TLA---VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLI--RELKGHGHW 283 (500)
Q Consensus 213 ~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~---v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~--~~~~~~~~~ 283 (500)
++-+-.+|.|.++..........+++- ... ..++.|+..+ .++++..+|.+.+-+....... +..+.|.-.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 455566788888866543333333321 111 2356676544 4777778888875444333332 355666554
Q ss_pred EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-ceeeecccCc
Q 010816 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMTGHQQL 362 (500)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-~~~~~~h~~~ 362 (500)
.....++. ..++.+.+|++|+.+..||.+.+... .....-|...
T Consensus 168 ~Wta~f~~-----------------------------------~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G 212 (339)
T KOG0280|consen 168 AWTAKFSD-----------------------------------KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG 212 (339)
T ss_pred eeeeeccc-----------------------------------CCCceEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence 44433322 23578899999999999999844432 2335668888
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 363 VNHVYFSP-DGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 363 v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
|.++.-+| .+.+|++|++|-.|++||.+. ++.+..-+ -.+.|+.+.. +|.
T Consensus 213 V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~---------------------------~p~ 264 (339)
T KOG0280|consen 213 VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKH---------------------------HPE 264 (339)
T ss_pred eEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-cccceEEEEe---------------------------cch
Confidence 99998876 688999999999999999884 55543221 1255666533 222
Q ss_pred --CCEEEEEECCCcEEEEECCCc--c---ccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEE-Eec
Q 010816 441 --SRLLLSGSKDSTLKVWDIRTQ--K---LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLK-LWM 499 (500)
Q Consensus 441 --~~~l~s~s~d~~v~iwd~~~~--~---~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~-iW~ 499 (500)
+.+|+++-..| .+|-+.+.+ + .+.....|.+-.+.-+|......||||+ .|+.++ +|.
T Consensus 265 ~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 265 IFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWL 331 (339)
T ss_pred hhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeee
Confidence 22333333333 455555432 2 2334566777788888855556788875 477755 774
No 259
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=4.2e-10 Score=117.58 Aligned_cols=188 Identities=16% Similarity=0.295 Sum_probs=142.1
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.-|-..|.++.=+|...+-+||+.||.|++|.+..+..+.... .-...|+.+.|+.+|+.+..+..||.+.+|.....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk- 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK- 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCc-
Confidence 3455678888889999999999999999999998887765543 22378999999999999999999999999987622
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEE---eCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCCC-eEEE
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA---SKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~---s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~-~l~t 256 (500)
.......|+.....+.|-. ..++++ +.++.+.+||.-.. .++. ..|...++++++.|.. .|++
T Consensus 2284 -~~~s~qchnk~~~Df~Fi~-------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllis 2353 (2439)
T KOG1064|consen 2284 -PYTSWQCHNKALSDFRFIG-------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLIS 2353 (2439)
T ss_pred -ceeccccCCccccceeeee-------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEe
Confidence 2223466777766666543 134443 46789999996432 2333 6799999999999875 5889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
||.+|.|++||++..+..+.++. . ...+.+++|+
T Consensus 2354 ggr~G~v~l~D~rqrql~h~~~~--------------------------------------------~--~~~~~f~~~s 2387 (2439)
T KOG1064|consen 2354 GGRKGEVCLFDIRQRQLRHTFQA--------------------------------------------L--DTREYFVTGS 2387 (2439)
T ss_pred cCCcCcEEEeehHHHHHHHHhhh--------------------------------------------h--hhhheeeccC
Confidence 99999999999987665543321 0 0246799999
Q ss_pred CCCeEEEEcCCCC
Q 010816 337 DDFTMFLWEPAVS 349 (500)
Q Consensus 337 ~d~~v~~wd~~~~ 349 (500)
..|.++||++...
T Consensus 2388 s~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2388 SEGNIKIWRLSEF 2400 (2439)
T ss_pred cccceEEEEcccc
Confidence 9999999997654
No 260
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.12 E-value=4e-08 Score=95.42 Aligned_cols=241 Identities=16% Similarity=0.105 Sum_probs=130.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE---EEeCCC--eEEEEeCCCCCcccccccCcccceEEEEeeee
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV---SGSKAG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~---s~~~d~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (500)
..|.+.|.+.+.+. .+......+.+-.|+|||+.++ +...++ .|.+.++.+|+... +...........|+|
T Consensus 165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--lt~~~g~~~~p~wSP- 240 (428)
T PRK01029 165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--ILALQGNQLMPTFSP- 240 (428)
T ss_pred ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--eecCCCCccceEECC-
Confidence 35667777665443 3444455667889999997532 333344 46677887765322 222233334566766
Q ss_pred ecCCCCceEEEEeC-CC----cEEEEECCCC---eEEEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCCeeE
Q 010816 205 HLNAPCRRFVSASK-DG----DARIWDVSLR---KCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLI 274 (500)
Q Consensus 205 ~~~~~~~~~~s~s~-dg----~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~~~~ 274 (500)
++++++..+. +| .+.+|++..+ .......++........|+|||. |+..+ .+|..++|....
T Consensus 241 ----DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~---- 312 (428)
T PRK01029 241 ----RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQI---- 312 (428)
T ss_pred ----CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC----
Confidence 4556665432 22 3444666542 22222222223345667888874 44333 455444442110
Q ss_pred EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (500)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~ 354 (500)
........
T Consensus 313 ------------------------------------------------------------------------~~~g~~~~ 320 (428)
T PRK01029 313 ------------------------------------------------------------------------DPEGQSPR 320 (428)
T ss_pred ------------------------------------------------------------------------cccccceE
Confidence 00000001
Q ss_pred eeecccCcEEEEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccc
Q 010816 355 RMTGHQQLVNHVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCC 431 (500)
Q Consensus 355 ~~~~h~~~v~~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (500)
.+..+...+....|||||+.|+..+.+ ..|.+||+.+++......+ ...+
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~-------------------------- 373 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENK-------------------------- 373 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCc--------------------------
Confidence 111222234567899999999876553 3699999988865432211 1111
Q ss_pred ceeeEEcCCCCEEEEEEC---CCcEEEEECCCccccccccCcccCEEEEEEcCCC
Q 010816 432 MSLYSWSADSRLLLSGSK---DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDG 483 (500)
Q Consensus 432 ~~~~~~s~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg 483 (500)
....|+|||+.|+..+. +..|.++|+.+++..... ...+.+...+|+|-.
T Consensus 374 -~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 374 -ESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred -cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 11368999998875443 346888898877654333 334556678898854
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=9.2e-07 Score=93.16 Aligned_cols=336 Identities=16% Similarity=0.194 Sum_probs=201.3
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEE----eCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLW----DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-- 180 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iw----d~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~-- 180 (500)
..+.|.++++-++...++.+..+|.|.+. +..+...- ....-...|.+++||||+..|+.+..++++.+.+..
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd 152 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFD 152 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccce
Confidence 35789999999999999999999999999 44433221 111235689999999999999999999988775321
Q ss_pred -------------C--------CCcccccccC------------------------cccceEEEEeeeeecCCCCceEEE
Q 010816 181 -------------T--------GKPSGNPLSG------------------------HKKWITGISWEPVHLNAPCRRFVS 215 (500)
Q Consensus 181 -------------~--------~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~~~~~~~~s 215 (500)
. |+.. +.+.| +...-..++|.. ++..|++
T Consensus 153 ~i~E~~l~~~~~~~~~~VsVGWGkKe-TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRG-----DG~yFAV 226 (928)
T PF04762_consen 153 PISEVPLDSDDFGESKHVSVGWGKKE-TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRG-----DGEYFAV 226 (928)
T ss_pred EEEEeecCccccCCCceeeeccCccc-CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECC-----CCcEEEE
Confidence 0 0000 00000 222344566754 6677777
Q ss_pred EeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC----CeEEEEeCCCCeeEEEee----cCC
Q 010816 216 ASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD----CTIKVWETTQGKLIRELK----GHG 281 (500)
Q Consensus 216 ~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d----g~i~lwd~~~~~~~~~~~----~~~ 281 (500)
.+. -+.+|||+-+ |....+-..-.+--.+++|.|.|.++++..- ..|.+|. ++|-....+. ...
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence 654 2578999854 5433332222223357899999876665542 5677776 4554444432 335
Q ss_pred ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC-ceeee-cc
Q 010816 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP-KTRMT-GH 359 (500)
Q Consensus 282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~-~~~~~-~h 359 (500)
..|..+.|+.+. +.|+..-.|. |.+|-..+.... +..+. ..
T Consensus 305 ~~v~~l~Wn~ds------------------------------------~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 305 EKVIELAWNSDS------------------------------------EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred ceeeEEEECCCC------------------------------------CEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 567788887653 3444444443 889976543321 11121 22
Q ss_pred cCcEEEEEECC-CCCEEEEEeCCCcEEEEeC----CCC--------ceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 360 QQLVNHVYFSP-DGQWVASASFDKSIKLWNG----TTG--------KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 360 ~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~----~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
...+..+.|+| +...|...+.+|.+..++. ..+ ..+.+..|..-.++.++. ....|......+
T Consensus 348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~----a~VPPPMs~~~l 423 (928)
T PF04762_consen 348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR----AVVPPPMSSYEL 423 (928)
T ss_pred CCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc----cCCCchHhceEE
Confidence 23355599999 4566777777777766543 211 123333333322222221 123345556667
Q ss_pred eccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc--------cccccC----------cccCEEEEEEcCCCCEEEE
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL--------KQDLPG----------HADEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~--------~~~~~~----------h~~~V~~l~~s~dg~~l~s 488 (500)
..+..+..++|++++..+|+-..||.+.+|....... ...+.. -...+..+.|..+...++.
T Consensus 424 ~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (928)
T PF04762_consen 424 ELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL 503 (928)
T ss_pred cCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence 7778888899999998899999999999998543211 111111 1234677888777766666
Q ss_pred EeCC
Q 010816 489 GGKD 492 (500)
Q Consensus 489 ~~~D 492 (500)
...+
T Consensus 504 ~~~~ 507 (928)
T PF04762_consen 504 SDSD 507 (928)
T ss_pred EecC
Confidence 5554
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.11 E-value=8.9e-10 Score=105.63 Aligned_cols=293 Identities=18% Similarity=0.312 Sum_probs=170.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-CcccccccCc-ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG-KPSGNPLSGH-KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
.+++..+..+|.|+-++.++.-|-. +-|+... .... .+..- .-.|-.+.|+|.. ...+-+.......-.+|++
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~-i~dld~p~~ppr-~l~h~tpw~vad~qws~h~---a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLY-IIDLDDPFTPPR-WLHHITPWQVADVQWSPHP---AKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeE-EEeccCCCCCce-eeeccCcchhcceecccCC---CCceeEEecCcchhhhhhh
Confidence 4567888999999988888876643 3344322 1111 11111 1123455676632 1223444445556678887
Q ss_pred CC---CeEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeeecccc
Q 010816 228 SL---RKCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 228 ~~---~~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
.. ...-..+.||...|+.+.|.+.. .+++++-|-.+..||++.... +.....-...-..+.+.-
T Consensus 99 A~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwny---------- 168 (1081)
T KOG0309|consen 99 AKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNY---------- 168 (1081)
T ss_pred hcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecc----------
Confidence 43 34456678999999999998753 689999999999999987532 111110000001111110
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASF 380 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~ 380 (500)
....+.+.+..+.+++||.+.+..+...+++|...|+.++|.. -...+.+.+.
T Consensus 169 --------------------------k~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~ 222 (1081)
T KOG0309|consen 169 --------------------------KDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN 222 (1081)
T ss_pred --------------------------cCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence 0113455666778999999988888888999999999999976 3456889999
Q ss_pred CCcEEEEeCCCCceE-EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 381 DKSIKLWNGTTGKFV-AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
||+|+.||....... ........++..-++-+... -++...+ ..+..+-----++.-..|+..
T Consensus 223 d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~------g~~~mp~----------~G~n~v~~~~c~n~d~e~n~~ 286 (1081)
T KOG0309|consen 223 DGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE------GYCIMPM----------VGGNMVPQLRCENSDLEWNVF 286 (1081)
T ss_pred CCceeeecccccccccceeccccCcceeccccccCc------eeEeccc----------cCCeeeeeccccchhhhhccc
Confidence 999999998753211 11111223333322211100 0011000 011110000011122334443
Q ss_pred C-ccccccccCcccCEEEEEEcCCC----------CEEEEEeCCCcEEEec
Q 010816 460 T-QKLKQDLPGHADEVFAVDWSPDG----------EKVASGGKDRVLKLWM 499 (500)
Q Consensus 460 ~-~~~~~~~~~h~~~V~~l~~s~dg----------~~l~s~~~D~~v~iW~ 499 (500)
+ .+.+..+.||.+.|...-|-..+ -.|+|=|.|.++|+|.
T Consensus 287 ~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWp 337 (1081)
T KOG0309|consen 287 DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWP 337 (1081)
T ss_pred cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeee
Confidence 3 34567889999988777665432 3799999999999995
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.09 E-value=1.3e-08 Score=89.26 Aligned_cols=245 Identities=18% Similarity=0.284 Sum_probs=152.8
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~ 221 (500)
+..++||.+.|+....-|...-+++++.|.++++|- .+.++.-..........++++.+.+ ..++++.|-..|+
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-----e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-----ESRRLYVGQDNGT 91 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-----cceEEEEEEecce
Confidence 345678888888888888888899999999999994 3444432222222234455665544 3467888888888
Q ss_pred EEEEECCC----CeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816 222 ARIWDVSL----RKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 222 v~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
+.-+.+.. ...++....|...|..+.|+-. ..+++.+.|..+.---.+.|..+..
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~-------------------- 151 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGG-------------------- 151 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccc--------------------
Confidence 87775532 2233334568888888888743 4577777776654322222221100
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEE
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA 376 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~la 376 (500)
++..+..... -+|+ .......|...|+.+.+-++
T Consensus 152 ----------------------------------Y~~~~~~t~~--~~d~-----~~~fvGd~~gqvt~lr~~~~----- 185 (404)
T KOG1409|consen 152 ----------------------------------YNFETPASAL--QFDA-----LYAFVGDHSGQITMLKLEQN----- 185 (404)
T ss_pred ----------------------------------eEeeccCCCC--ceee-----EEEEecccccceEEEEEeec-----
Confidence 0000000000 0000 00011123333333333322
Q ss_pred EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816 377 SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 377 sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw 456 (500)
....+.++++|.++++++ +|.+..+.|.+|..|..|.+|
T Consensus 186 --------------~~~~i~~~~~h~~~~~~l---------------------------~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 186 --------------GCQLITTFNGHTGEVTCL---------------------------KWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred --------------CCceEEEEcCcccceEEE---------------------------EEcCCCcEEEeccccCceEEE
Confidence 234456678888888776 678888899999999999999
Q ss_pred ECCCccc-cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 457 DIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 457 d~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+-..+. ...+.+|.+.|..+..-+--+.|.+++.||.|.+|+
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 9876543 346778999999888877789999999999999997
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.07 E-value=9.8e-08 Score=91.69 Aligned_cols=266 Identities=17% Similarity=0.330 Sum_probs=163.6
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce------e---------EEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------M---------FKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~------~---------~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
....|++|+....++|.|+.||.+++-.+.+... + ..+.||+..|..+.|+.+.+.|-+...+|.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCce
Confidence 4578999999999999999999999998765321 1 246699999999999999999999999999
Q ss_pred EEEEeCCCCCcccccc-cCcccceEEEEeeeeecCCCCceE---------EEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816 174 LQCWDPQTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRF---------VSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~---------~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v 243 (500)
|.+|-+-+|......+ ...+..|.+++|+. ++.++ +.|+-||. |||.-+. ++. -.
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~-----dG~kIcIvYeDGavIVGsvdGN-RIwgKeL-------kg~--~l 159 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNL-----DGTKICIVYEDGAVIVGSVDGN-RIWGKEL-------KGQ--LL 159 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcC-----CCcEEEEEEccCCEEEEeeccc-eecchhc-------chh--ec
Confidence 9999988776433222 23455678899964 33444 44555543 5554321 111 12
Q ss_pred EEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce--eeeccccCCCCCCCCHHHHHHHHHHh
Q 010816 244 TCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA--LRTGAFDHTGKQYSSPEEMKKAALER 320 (500)
Q Consensus 244 ~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (500)
..+.|++|.. ++.+-..|.+.+||.... ....++. ...|+.-....... +....+.+ + +
T Consensus 160 ~hv~ws~D~~~~Lf~~ange~hlydnqgn-F~~Kl~~-~c~Vn~tg~~s~~~~kia~i~w~~-g---------------~ 221 (1189)
T KOG2041|consen 160 AHVLWSEDLEQALFKKANGETHLYDNQGN-FERKLEK-DCEVNGTGIFSNFPTKIAEIEWNT-G---------------P 221 (1189)
T ss_pred cceeecccHHHHHhhhcCCcEEEeccccc-HHHhhhh-ceEEeeeeeecCCCccccceeecc-C---------------c
Confidence 2467888763 455667799999986532 1111110 00011111110000 00000000 0 0
Q ss_pred hhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC---------cEEEEeCCC
Q 010816 321 YNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK---------SIKLWNGTT 391 (500)
Q Consensus 321 ~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg---------~i~lwd~~~ 391 (500)
+.. ..+....++.+-..|.+.+-.......|...-.+ -.+....|+++|..||.++.|. .|..|.. -
T Consensus 222 ~~~-v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~ 297 (1189)
T KOG2041|consen 222 YQP-VPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-Y 297 (1189)
T ss_pred ccc-CCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEecc-c
Confidence 000 1112346888999999888765544444443333 4577889999999999988753 3455543 3
Q ss_pred CceEEEEeCCcccEEEEEee
Q 010816 392 GKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 392 ~~~~~~~~~h~~~v~~~~~~ 411 (500)
|+.+.+++.....|+.+.++
T Consensus 298 G~i~gtlkvpg~~It~lsWE 317 (1189)
T KOG2041|consen 298 GHIVGTLKVPGSCITGLSWE 317 (1189)
T ss_pred hhheEEEecCCceeeeeEEc
Confidence 66677777766667776654
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.9e-07 Score=91.75 Aligned_cols=202 Identities=17% Similarity=0.150 Sum_probs=119.7
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
.+.++|...+. ...+..+...+....|++||. |+..+.+ ..|.+||+.+++... +......+....++|+
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpD---- 253 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPD---- 253 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCC----
Confidence 46677776443 333445667788999999984 5444432 368889998876433 2222222334455544
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 373 (500)
+..++ +.+.++ .|+++|+.... ...+..+........|+|||+
T Consensus 254 --------------------------------G~~la~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~ 299 (430)
T PRK00178 254 --------------------------------GSKLAFVLSKDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGR 299 (430)
T ss_pred --------------------------------CCEEEEEEccCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCC
Confidence 23343 444444 57778875432 234455555566789999999
Q ss_pred EEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816 374 WVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (500)
Q Consensus 374 ~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d 450 (500)
.|+..+. +| .|+++|+.+++....... .. .....+|+|+|+.|+..+.+
T Consensus 300 ~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~---------------------------~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 300 TLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GN---------------------------YNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEeecC-CC---------------------------CccceEECCCCCEEEEEEcc
Confidence 8876654 33 577778777654321110 00 00112689999999877653
Q ss_pred -C--cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 451 -S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 451 -~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+ .|.+||+.+++... +.. ........|+|||+.|+..+.+
T Consensus 352 ~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 352 DGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred CCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCCEEEEEEec
Confidence 3 57889998876532 221 1122356899999999876544
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.03 E-value=4.1e-08 Score=84.42 Aligned_cols=178 Identities=18% Similarity=0.182 Sum_probs=116.1
Q ss_pred cEEEEEEcC---CCC-eEEEEeCCCcEEEEeCCCCceeEEecCC---C---CCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 110 AVLSVAFSP---DGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH---K---NWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 110 ~V~~~~~sp---~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h---~---~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
.++.+.|.- +|. .|+-+-.+|.|.++..........+.+- . .-..++.|++.+..+++...+|.+..-+.
T Consensus 71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~ 150 (339)
T KOG0280|consen 71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE 150 (339)
T ss_pred ccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec
Confidence 344454432 333 4666677888999876543333333221 1 12457889999999999999998884443
Q ss_pred CCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEEE-ecCccccEEEEEeCCC--CeE
Q 010816 180 QTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVIC-LSGHTLAVTCVKWGGD--GVI 254 (500)
Q Consensus 180 ~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~~-~~~h~~~v~~~~~~~~--~~l 254 (500)
..+... .+..+.|....--..|+..++ +.+.+||.|+.+..||++ .++++.. .+-|+..|.++.-++. .+|
T Consensus 151 t~~~le~vq~wk~He~E~Wta~f~~~~p----nlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 151 TEMVLEKVQTWKVHEFEAWTAKFSDKEP----NLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ceeeeeecccccccceeeeeeecccCCC----ceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceE
Confidence 332211 134667776665555554332 578999999999999999 4445544 4568899999987764 379
Q ss_pred EEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCc
Q 010816 255 YTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTE 292 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~ 292 (500)
+||+.|-.|++||.+ .++.+...+ ....|..+..+|.
T Consensus 227 ~TGsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPE 264 (339)
T ss_pred EEeccccceeeeehhcccCccccCc-cccceEEEEecch
Confidence 999999999999998 455543322 2245666665553
No 267
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.01 E-value=3.2e-06 Score=78.37 Aligned_cols=269 Identities=14% Similarity=0.081 Sum_probs=147.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEeCCCCCcccccccCcccc----
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK----------AGELQCWDPQTGKPSGNPLSGHKKW---- 195 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~----------d~~i~~wd~~~~~~~~~~~~~~~~~---- 195 (500)
++|.+.|..+.+.+..+..-..+-. + ++||++.|+.+.. +..|.+||..+.+.......+.+-.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 7899999999887766653333322 4 8999998877655 7899999999987654332211100
Q ss_pred --eEEEEeeeeecCCCCceEEEEe--CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCC-
Q 010816 196 --ITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ- 270 (500)
Q Consensus 196 --v~~~~~~~~~~~~~~~~~~s~s--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~- 270 (500)
-..+.+ +.+++.+.... .+..|-+.|+.+++.+..+.--. ...-.. .++....+-+.||......+.+
T Consensus 105 ~~~~~~~l-----s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~-t~e~~~~~~~~Dg~~~~v~~d~~ 177 (352)
T TIGR02658 105 TYPWMTSL-----TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP-TANDTFFMHCRDGSLAKVGYGTK 177 (352)
T ss_pred CccceEEE-----CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE-ecCCccEEEeecCceEEEEecCC
Confidence 012222 33555555444 37899999999988877654211 111111 1122222333444433322221
Q ss_pred CeeEEEeecCCceEEEEE-ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816 271 GKLIRELKGHGHWVNSLA-LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~ 349 (500)
|+ .. ..... +..+. + ..+..+ ......+..+..... |+|.+.|+...
T Consensus 178 g~-~~--------~~~~~vf~~~~-------~---~v~~rP------------~~~~~dg~~~~vs~e-G~V~~id~~~~ 225 (352)
T TIGR02658 178 GN-PK--------IKPTEVFHPED-------E---YLINHP------------AYSNKSGRLVWPTYT-GKIFQIDLSSG 225 (352)
T ss_pred Cc-eE--------EeeeeeecCCc-------c---ccccCC------------ceEcCCCcEEEEecC-CeEEEEecCCC
Confidence 11 10 00000 00000 0 000000 000001233434334 99999885332
Q ss_pred CC----Cceeeec-------ccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 350 KQ----PKTRMTG-------HQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 350 ~~----~~~~~~~-------h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
.. ....+.. ......-++++|+++.+..... .+.|.++|..+++.+..+..- .....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~i 304 (352)
T TIGR02658 226 DAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSI 304 (352)
T ss_pred cceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeE
Confidence 11 1111110 1222334999999988877432 257999999999988766531 233333
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccc
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~ 467 (500)
+++||++ +|++.+ .++.|.++|..+++.++.+
T Consensus 305 ---------------------------avS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 305 ---------------------------NVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred ---------------------------EECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 5699999 888776 5788999999999887766
No 268
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.4e-07 Score=91.56 Aligned_cols=352 Identities=15% Similarity=0.111 Sum_probs=195.0
Q ss_pred ccccccCCcccEEEEEEcCCC------------CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC---CC-C
Q 010816 100 CSATIAGHTEAVLSVAFSPDG------------RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA---DG-K 163 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~------------~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~---~~-~ 163 (500)
..+.+.-|...|+.+.|.|-. -+||++.-.|.|.+||......+..+..|.+++..+.|-+ ++ .
T Consensus 47 ~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd 126 (1062)
T KOG1912|consen 47 LIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRD 126 (1062)
T ss_pred hhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchh
Confidence 345667789999999998731 2578888899999999988877777888999999999975 34 5
Q ss_pred EEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-------CCeEEEEe
Q 010816 164 HLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKCVICL 236 (500)
Q Consensus 164 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-------~~~~~~~~ 236 (500)
.|+.-....++.+|+..+|......-.+| ....++.+.|++. +.|..-+..|.+-+-+.- .++..+..
T Consensus 127 ~LlaIh~ss~lvLwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~----rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~ 201 (1062)
T KOG1912|consen 127 VLLAIHGSSTLVLWNTDTGEKFWKYDYSH-EILSCFRVDPFDS----RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQIT 201 (1062)
T ss_pred eeEEecCCcEEEEEEccCCceeeccccCC-cceeeeeeCCCCc----ceEEEEccCceEEEEeccCCCCCCCCceeEEEe
Confidence 67777778899999999997654322233 3455677777543 345555555655555431 12222222
Q ss_pred cCccc------------c-------------EEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816 237 SGHTL------------A-------------VTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (500)
Q Consensus 237 ~~h~~------------~-------------v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~ 290 (500)
..|.. . ....+|+|.- .++....-..+.++|++-..++.........+.-+.+-
T Consensus 202 sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vl 281 (1062)
T KOG1912|consen 202 SDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVL 281 (1062)
T ss_pred cCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEec
Confidence 22221 0 0012234321 23344556678888876555554443332222222222
Q ss_pred CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-----cCcEEE
Q 010816 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-----QQLVNH 365 (500)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-----~~~v~~ 365 (500)
|+ ...+.+.+...||.+.+|-.............| ...+.+
T Consensus 282 P~----------------------------------~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~ 327 (1062)
T KOG1912|consen 282 PD----------------------------------PRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHV 327 (1062)
T ss_pred cC----------------------------------CCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEE
Confidence 22 234678999999999999643321111110000 111222
Q ss_pred -----------EEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc-EEEEEeeeee-------------eecCC
Q 010816 366 -----------VYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRFELIY-------------CFRYP 419 (500)
Q Consensus 366 -----------l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~-------------~~~~~ 419 (500)
..-.|. ...++.--.+|.+.+|.+..|+.-........+ +..+.|.... .-..+
T Consensus 328 vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~ 407 (1062)
T KOG1912|consen 328 VRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHS 407 (1062)
T ss_pred EeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCC
Confidence 222343 334444445778889988866532111110000 0001110000 00011
Q ss_pred CCceeeeeccc-cceeeEEcCCC-------CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 420 SNFYCVVDMSC-CMSLYSWSADS-------RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 420 ~~~~~~~~~~~-~~~~~~~s~~~-------~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.+..+.....- ..+...-.|.| .++|.|...|+|.++|+.++...+.+..|...|.++.|-... .|++.+.
T Consensus 408 sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~s-slvSfsy 486 (1062)
T KOG1912|consen 408 SGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNS-SLVSFSY 486 (1062)
T ss_pred CCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccce-eEEEeee
Confidence 11111110000 00111111222 278889999999999999999999999999999999997653 4555543
No 269
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=8.9e-08 Score=81.35 Aligned_cols=233 Identities=17% Similarity=0.103 Sum_probs=146.1
Q ss_pred EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeC--CCCeEEEEeCCCeEEEEeCCCCee
Q 010816 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG--GDGVIYTGSQDCTIKVWETTQGKL 273 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~~l~t~~~dg~i~lwd~~~~~~ 273 (500)
+++.|-|..+-..|..++.|+.-|...+|...+.+. ++....|...|+-+.-. ....+..++.|.+++++++..+..
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~ 150 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSN 150 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcc
Confidence 466777777777888999999999999999986543 23333344433322111 112467789999999998765433
Q ss_pred EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (500)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~ 353 (500)
-..+......+.+++.+++ +..+++-++...|..|.+.......
T Consensus 151 ~~~~h~~~~~~ns~~~snd------------------------------------~~~~~~Vgds~~Vf~y~id~~sey~ 194 (344)
T KOG4532|consen 151 KFAVHNQNLTQNSLHYSND------------------------------------PSWGSSVGDSRRVFRYAIDDESEYI 194 (344)
T ss_pred cceeeccccceeeeEEcCC------------------------------------CceEEEecCCCcceEEEeCCcccee
Confidence 2222111122555555554 3455666667777777665433221
Q ss_pred --eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE-----EEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 354 --TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-----AVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 354 --~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
......++.=-+.+|+.....+|++..||++.|||++..... .+-..|.+.+...+|
T Consensus 195 ~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~F---------------- 258 (344)
T KOG4532|consen 195 ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRF---------------- 258 (344)
T ss_pred eeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEe----------------
Confidence 123333444567889999999999999999999999864322 223357888877765
Q ss_pred eccccceeeEEcCCC--CEEEEEECCCcEEEEECCCcccccc-------ccCcccC-EEEEEEcCCCCEEEEEeCC
Q 010816 427 DMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQD-------LPGHADE-VFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~-------~~~h~~~-V~~l~~s~dg~~l~s~~~D 492 (500)
++.| .+|...-.-+.+++.|+++.+-.+. ...|... ++.-.|+.++..+.+.+++
T Consensus 259 -----------sl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 259 -----------SLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred -----------cCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccch
Confidence 3333 3455455556789999988654332 2234433 7888888888777766654
No 270
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.98 E-value=1.5e-06 Score=84.17 Aligned_cols=308 Identities=10% Similarity=0.061 Sum_probs=174.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCC--CCEE-----EEEEcC--CCCEEEEEeCCCeEEEEeCCCCCccccccc
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK--NWVL-----CIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
+..++.++.++.+.-+|.++++.+....-.. .... .+.-.| ++..++.++.++.+..+|.++|+..-....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 5677778888888889998888776543211 0000 000011 356788888999999999999986543211
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-----EEEEeCCCCeEEEEeCCCeEEE
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIKV 265 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~t~~~dg~i~l 265 (500)
. ..+. -.|.. ...+++.+..++.+.-+|..+++.+.......... .+... .++.++.++.++.+..
T Consensus 149 ~--~~~~---ssP~v---~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a 219 (394)
T PRK11138 149 A--GEAL---SRPVV---SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT-AFGGAIVGGDNGRVSA 219 (394)
T ss_pred C--Ccee---cCCEE---ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-ECCEEEEEcCCCEEEE
Confidence 1 1111 11211 12467778889999999999998876654321100 00011 1356777888999999
Q ss_pred EeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 266 WETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+|..+|+.+......... ...+. ........+ . ...+.++.++.++.+...
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~-------------~~~~~~~sP------------~---v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEID-------------RLVDVDTTP------------V---VVGGVVYALAYNGNLVAL 271 (394)
T ss_pred EEccCChhhheeccccCCCccchh-------------cccccCCCc------------E---EECCEEEEEEcCCeEEEE
Confidence 999988765543211000 00000 000000000 0 013456677788888888
Q ss_pred cCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424 (500)
Q Consensus 345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 424 (500)
|....+.......+. ...+. ..+..|..++.||.+..+|..+|+.+-....-.....
T Consensus 272 d~~tG~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~------------------ 328 (394)
T PRK11138 272 DLRSGQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLL------------------ 328 (394)
T ss_pred ECCCCCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcc------------------
Confidence 876554322211111 11111 2466777888999999999999876432211000000
Q ss_pred eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEec
Q 010816 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+... -.+..++.++.||.++..|..+++.+....-....+.+ ..+ .+..|+.++.||.|+.+.
T Consensus 329 --------~sp~--v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~ 392 (394)
T PRK11138 329 --------TAPV--LYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAIT 392 (394)
T ss_pred --------cCCE--EECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEe
Confidence 0000 12557788999999999999999887654332222332 122 245899999999988764
No 271
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=2.5e-07 Score=89.92 Aligned_cols=213 Identities=16% Similarity=0.103 Sum_probs=113.4
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCCe---E-EEEeCCC--eEEEEeCCCCeeEEEeecCCceEEEEEecCcce
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV---I-YTGSQDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~---l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 294 (500)
.|.+.|...+.... +......+.+-.|+|||. + ++...++ .|.+.++.+|+..+... .........++|++
T Consensus 166 ~l~~~d~dG~~~~~-lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~g~~~~p~wSPDG- 242 (428)
T PRK01029 166 ELWSVDYDGQNLRP-LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQGNQLMPTFSPRK- 242 (428)
T ss_pred eEEEEcCCCCCceE-cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CCCCccceEECCCC-
Confidence 45666654433222 323344556778999973 2 3444444 47777887765433221 22223345566553
Q ss_pred eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-C----CCeEEEEcCCCC--CCCceeeecccCcEEEEE
Q 010816 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-D----DFTMFLWEPAVS--KQPKTRMTGHQQLVNHVY 367 (500)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~----d~~v~~wd~~~~--~~~~~~~~~h~~~v~~l~ 367 (500)
..++..+ . +-.+..|++... ..+.....++.......+
T Consensus 243 -----------------------------------~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~ 287 (428)
T PRK01029 243 -----------------------------------KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS 287 (428)
T ss_pred -----------------------------------CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence 2333222 1 223344665432 112222222223446789
Q ss_pred ECCCCCEEEEEe-CCCcEEEE--eCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 368 FSPDGQWVASAS-FDKSIKLW--NGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 368 ~sp~g~~lasgs-~Dg~i~lw--d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
|+|||+.|+..+ .+|...+| ++.. +.....+..+... .....|||||+.
T Consensus 288 wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~---------------------------~~~p~wSPDG~~ 340 (428)
T PRK01029 288 FSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN---------------------------SSCPAWSPDGKK 340 (428)
T ss_pred ECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC---------------------------ccceeECCCCCE
Confidence 999999888765 46655555 4332 1112222211111 122378999999
Q ss_pred EEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC-C--CcEEEec
Q 010816 444 LLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK-D--RVLKLWM 499 (500)
Q Consensus 444 l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D--~~v~iW~ 499 (500)
|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+..+. + ..|++|+
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 9877653 368999998887643 3323345678899999998875433 2 3455553
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=3.3e-07 Score=89.82 Aligned_cols=201 Identities=18% Similarity=0.146 Sum_probs=114.2
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEe-CCC--eEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGS-QDC--TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg--~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
.+.++|...... ..+..+...+.+..|+|||. |+..+ .++ .|.+||+.+++.... ...........++|+
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPD---- 272 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPD---- 272 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCC----
Confidence 566667644332 23334556778889999984 44433 333 588889887764322 111112223445544
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCC
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~ 373 (500)
+..+ ++.+.++. |+++|+... ....+..+.......+|+|||+
T Consensus 273 --------------------------------G~~La~~~~~~g~~~Iy~~dl~tg--~~~~lt~~~~~~~~p~wSpDG~ 318 (448)
T PRK04792 273 --------------------------------GKKLALVLSKDGQPEIYVVDIATK--ALTRITRHRAIDTEPSWHPDGK 318 (448)
T ss_pred --------------------------------CCEEEEEEeCCCCeEEEEEECCCC--CeEECccCCCCccceEECCCCC
Confidence 2334 34555664 666776533 2334445555567789999999
Q ss_pred EEEEEeC-CC--cEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 374 WVASASF-DK--SIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 374 ~lasgs~-Dg--~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
.|+..+. ++ .|+++|+.+++.... +.++. ....+|+|||++|+..+.
T Consensus 319 ~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-----------------------------~~~~~~SpDG~~l~~~~~ 369 (448)
T PRK04792 319 SLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQ-----------------------------NLGGSITPDGRSMIMVNR 369 (448)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEEecCCCC-----------------------------CcCeeECCCCCEEEEEEe
Confidence 8876654 33 466677777654322 11110 011268999999887665
Q ss_pred C-C--cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 450 D-S--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 450 d-~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+ + .|.++|+.+++... +.... ......|+|||+.|+..+.+
T Consensus 370 ~~g~~~I~~~dl~~g~~~~-lt~~~-~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 370 TNGKFNIARQDLETGAMQV-LTSTR-LDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred cCCceEEEEEECCCCCeEE-ccCCC-CCCCceECCCCCEEEEEEec
Confidence 3 4 45567877765432 22211 12245799999998765543
No 273
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=5e-08 Score=84.50 Aligned_cols=289 Identities=18% Similarity=0.306 Sum_probs=161.8
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-e----eEEecCCC------------CCEEEEEEcCCC--CEEEEE
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-P----MFKCTGHK------------NWVLCIAWSADG--KHLVSG 168 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-~----~~~~~~h~------------~~v~~v~~s~~~--~~l~s~ 168 (500)
.+.|+++.|...|.+||+|...|.|.++.-+... + +..+++|+ ..|..+.|-.++ ..++..
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 5679999999999999999999999999765322 1 12244553 347788887654 356677
Q ss_pred eCCCeEEEEeCCCCCcccccccCc--------ccceEEEEe--eeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816 169 SKAGELQCWDPQTGKPSGNPLSGH--------KKWITGISW--EPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (500)
Q Consensus 169 ~~d~~i~~wd~~~~~~~~~~~~~~--------~~~v~~~~~--~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 238 (500)
+.|++|++|.+.........-... .+++++..- .|. .+ ....++++ .- .|+| -..
T Consensus 106 tNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lpr-ls-~hd~iiaa-~p--~rvy----------aNa 170 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPR-LS-EHDEIIAA-KP--CRVY----------ANA 170 (460)
T ss_pred cCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhccc-cc-ccceEEEe-cc--ceec----------ccc
Confidence 899999999876442110000000 011111000 000 00 00011111 10 0111 246
Q ss_pred ccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 239 h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
|..-+.++.+++|...+..+.|=.|.+|++.-..
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D---------------------------------------------- 204 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIID---------------------------------------------- 204 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccC----------------------------------------------
Confidence 7778888999888777777788889999864211
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEE-
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVA- 396 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~- 396 (500)
+...|-|+.. ..+..-...|++..|+|. .+.+.-++..|.|++-|++...+..
T Consensus 205 --------------------~sFnIVDiKP-----~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 205 --------------------GSFNIVDIKP-----HNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred --------------------CceEEEeccC-----ccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 1111111110 011122234666778884 4666777788999999987433211
Q ss_pred ---EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc-cccccccCc--
Q 010816 397 ---VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGH-- 470 (500)
Q Consensus 397 ---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h-- 470 (500)
.+.....++. .........+++.+.|+++|+++++-+. -+|+|||.+.. .++++.+-|
T Consensus 260 ~~klfe~~~D~v~---------------~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~ 323 (460)
T COG5170 260 SKKLFELTIDGVD---------------VDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD 323 (460)
T ss_pred chhhhhhccCccc---------------chhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence 0110001100 0000111234555678999999987654 47999998753 334444333
Q ss_pred ----------ccCE---EEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 471 ----------ADEV---FAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 471 ----------~~~V---~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.+.| +.+.||.|.+.+.+|+-.+...++
T Consensus 324 l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 324 LMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred HHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence 2344 457899998888888877665554
No 274
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=3.6e-08 Score=92.27 Aligned_cols=174 Identities=18% Similarity=0.319 Sum_probs=125.3
Q ss_pred eEeEEe-cccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe------cCCCC-----CEEEEEE
Q 010816 91 VFRIRP-VNRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC------TGHKN-----WVLCIAW 158 (500)
Q Consensus 91 ~~~~~~-~~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~------~~h~~-----~v~~v~~ 158 (500)
++|++. .++.+..+.-..+.+++|.+++-..+||+|+.||.|..||..+......+ ..|.+ .|+++.|
T Consensus 157 vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F 236 (703)
T KOG2321|consen 157 VYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKF 236 (703)
T ss_pred eEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEe
Confidence 444432 23344555566789999999999999999999999999998765433322 12333 4999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (500)
Q Consensus 159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 238 (500)
+.+|-.+++|..+|.+.|||+++.++....-.+..-++..+.|.+.. ....+++. ....++|||-.+++....+..
T Consensus 237 ~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~---~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 237 RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD---QQNKVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred cCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC---CCceEEec-chHHhhhcccccCCceeeccc
Confidence 99999999999999999999999887654445556778889997742 22344443 346889999999987766544
Q ss_pred ccccEEEEEeCC-CCeEEEEeCCCeEEEEeCC
Q 010816 239 HTLAVTCVKWGG-DGVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 239 h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~ 269 (500)
. ..+..+++-+ .|.+++|-.+..+..|=+.
T Consensus 313 t-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP 343 (703)
T KOG2321|consen 313 T-SDLNDFCFVPGSGMFFTANESSKMHTYYIP 343 (703)
T ss_pred c-CCcCceeeecCCceEEEecCCCcceeEEcc
Confidence 3 3366666655 4678888887777666443
No 275
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=2.8e-08 Score=89.13 Aligned_cols=161 Identities=17% Similarity=0.306 Sum_probs=110.4
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEecCCCCCEEEEEEcCCCCEEE---EEeCCCeEEEEeCCCCCc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCTGHKNWVLCIAWSADGKHLV---SGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~~h~~~v~~v~~s~~~~~l~---s~~~d~~i~~wd~~~~~~ 184 (500)
+..+..+|.+++||.+..+....+.++....+ +.....-...-.++.|-.+...+. .++....+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 44456778888888888777776776654332 111111111223334433333333 355566777777665443
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCCeEEEEeCCCeE
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDGVIYTGSQDCTI 263 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~l~t~~~dg~i 263 (500)
.+.-||-..+..+.|+| +.+.++++..|..||+-....-..+.. .-||..-|..++..++..|++||.|+++
T Consensus 145 --~~~lGhvSml~dVavS~-----D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 145 --EPILGHVSMLLDVAVSP-----DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTL 217 (390)
T ss_pred --chhhhhhhhhheeeecC-----CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCCcE
Confidence 46789999999999987 447899999999999876543333322 3489999999999888889999999999
Q ss_pred EEEeCCCCeeEEEee
Q 010816 264 KVWETTQGKLIRELK 278 (500)
Q Consensus 264 ~lwd~~~~~~~~~~~ 278 (500)
++||+.+|+.+.++.
T Consensus 218 r~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 218 RLWDITSGKLLDTCD 232 (390)
T ss_pred EEEecccCCcccccc
Confidence 999999999886543
No 276
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.89 E-value=1.7e-05 Score=75.29 Aligned_cols=234 Identities=15% Similarity=0.253 Sum_probs=126.7
Q ss_pred CCceEEEEeC----CCcEEEEECCCC--eE--EEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCC-CeeEEEe
Q 010816 209 PCRRFVSASK----DGDARIWDVSLR--KC--VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQ-GKLIREL 277 (500)
Q Consensus 209 ~~~~~~s~s~----dg~v~iwd~~~~--~~--~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~-~~~~~~~ 277 (500)
+.+++.+... ++.|..|++... +. +.........-..++.++++. |+++. .+|+|.++++.. |......
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 3445555544 578888887653 32 222221122234577777763 44444 689999999876 4433221
Q ss_pred --ecC-----------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEE
Q 010816 278 --KGH-----------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFL 343 (500)
Q Consensus 278 --~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~ 343 (500)
..+ ..-..++.++|+ +.. +++.-....|++
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pd------------------------------------g~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPD------------------------------------GRFVYVPDLGADRVYV 170 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TT------------------------------------SSEEEEEETTTTEEEE
T ss_pred eecccCCCCCcccccccccceeEEECCC------------------------------------CCEEEEEecCCCEEEE
Confidence 101 111223333332 223 333334457888
Q ss_pred EcCCCCCCCce---e-eecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCC--CCceE--EEEeCCcccEEEEEeeeee
Q 010816 344 WEPAVSKQPKT---R-MTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TGKFV--AVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 344 wd~~~~~~~~~---~-~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~--~~~~~--~~~~~h~~~v~~~~~~~~~ 414 (500)
|+......... . ........+.+.|+|+|+++... -.++.|.++++. ++... ......
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~------------- 237 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL------------- 237 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC-------------
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec-------------
Confidence 87654432111 1 12334557899999999887555 457889999877 44321 111100
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECC--Cccc--cccccCcccCEEEEEEcCCCCEEEEE
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIR--TQKL--KQDLPGHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~--~~~~--~~~~~~h~~~V~~l~~s~dg~~l~s~ 489 (500)
+.. .......+.+.++|||++|+++. .++.|-+|++. ++++ +..++.....-..+.++|+|++|+++
T Consensus 238 ----~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 238 ----PEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp ----ETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred ----ccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 000 00011234456799999988876 45689999983 2333 22333223346789999999999987
Q ss_pred e-CCCcEEEec
Q 010816 490 G-KDRVLKLWM 499 (500)
Q Consensus 490 ~-~D~~v~iW~ 499 (500)
. .++.|.+|+
T Consensus 310 ~~~s~~v~vf~ 320 (345)
T PF10282_consen 310 NQDSNTVSVFD 320 (345)
T ss_dssp ETTTTEEEEEE
T ss_pred ecCCCeEEEEE
Confidence 6 456787764
No 277
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=2.8e-05 Score=71.83 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=99.1
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCcccEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
+++.++.-|. |..++.+.... .....+|...|.-..+..+++-++.|..|| .+-|||..+++... +...-+.|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~---~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~ 405 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDG---YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIE 405 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCC---eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceE
Confidence 4556655554 44555543322 123346777798889998888999999999 89999998887543 334444555
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 486 (500)
.+ ..+|+|++++.+.....+-+.|+.+++....-+...+-|+.++|||++++|
T Consensus 406 av---------------------------~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 406 AV---------------------------KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred EE---------------------------EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 44 348999999999999999999999988765444556789999999999999
Q ss_pred EEEeCCC
Q 010816 487 ASGGKDR 493 (500)
Q Consensus 487 ~s~~~D~ 493 (500)
|-+=-+|
T Consensus 459 AYafP~g 465 (668)
T COG4946 459 AYAFPEG 465 (668)
T ss_pred EEecCcc
Confidence 9886665
No 278
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=4.1e-06 Score=90.08 Aligned_cols=273 Identities=16% Similarity=0.183 Sum_probs=152.7
Q ss_pred EEEEcCC-CCeEEEEeCCCcEEEEeCCCCceeEEecC--C------------CCCEEEEEEcCCCCEEEEEe-CCCeEEE
Q 010816 113 SVAFSPD-GRQLASGSGDTTVRLWDLNTQTPMFKCTG--H------------KNWVLCIAWSADGKHLVSGS-KAGELQC 176 (500)
Q Consensus 113 ~~~~sp~-~~~lat~~~d~~i~iwd~~~~~~~~~~~~--h------------~~~v~~v~~s~~~~~l~s~~-~d~~i~~ 176 (500)
.++++++ ++..++-+..+.|++||..+.. +....+ . -.....+++.++++.|+.+. ..+.|+.
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 5788875 5566666778899999986543 222211 1 12357889999888766654 4577999
Q ss_pred EeCCCCCccccc--------ccCcc-------cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---
Q 010816 177 WDPQTGKPSGNP--------LSGHK-------KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--- 238 (500)
Q Consensus 177 wd~~~~~~~~~~--------~~~~~-------~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--- 238 (500)
+|..++...... ..+.. ..-.++++.|. .+..+++.+.++.|++||...+.... +.+
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~----~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~ 725 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV----NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGY 725 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC----CCeEEEEECCCCeEEEEECCCCeEEE-EecCCc
Confidence 998765421100 00000 01124455441 33567888888999999988765432 111
Q ss_pred ------cc------ccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816 239 ------HT------LAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (500)
Q Consensus 239 ------h~------~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 304 (500)
+. .....+++++++ .+++.+.++.|++||+.++.... +.+ ...+. +
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~-~~g-g~~~~-----~------------- 785 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRL-LAG-GDPTF-----S------------- 785 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEE-EEe-ccccc-----C-------------
Confidence 11 123457888876 34455667899999987654211 000 00000 0
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (500)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i 384 (500)
....-.|..|+. .... ...| ...++++++|.++++-+.++.|
T Consensus 786 ------------------------~~l~~fG~~dG~----------g~~~-~l~~---P~Gvavd~dG~LYVADs~N~rI 827 (1057)
T PLN02919 786 ------------------------DNLFKFGDHDGV----------GSEV-LLQH---PLGVLCAKDGQIYVADSYNHKI 827 (1057)
T ss_pred ------------------------cccccccCCCCc----------hhhh-hccC---CceeeEeCCCcEEEEECCCCEE
Confidence 000000111110 0000 0112 3478999999999999999999
Q ss_pred EEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 385 KLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 385 ~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
++||..++...... +....- +. .+. .....-.....++++++|+++++-+.++.|++||+.+++.
T Consensus 828 rviD~~tg~v~tia-G~G~~G----~~--------dG~-~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 828 KKLDPATKRVTTLA-GTGKAG----FK--------DGK-ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCeEEEEe-ccCCcC----CC--------CCc-ccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 99999887665332 211100 00 000 0000001123346789999988888999999999988654
No 279
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=4.4e-06 Score=72.39 Aligned_cols=246 Identities=17% Similarity=0.201 Sum_probs=132.9
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCC---CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 114 VAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKN---WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 114 ~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
++.+++|+.||.- .|..|.|=..++. ..+..++.+.+ .=+.++||||+.+||.+...|+|+++|+..... ...
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 5677899988875 5666777654432 12223332222 236799999999999999999999999864322 111
Q ss_pred c------cCcccceEEEEeeeeecCCC-CceEEEEeCCCcEEEEECCCC-----eEE--EEecC-ccccEEEEEeCCCC-
Q 010816 189 L------SGHKKWITGISWEPVHLNAP-CRRFVSASKDGDARIWDVSLR-----KCV--ICLSG-HTLAVTCVKWGGDG- 252 (500)
Q Consensus 189 ~------~~~~~~v~~~~~~~~~~~~~-~~~~~s~s~dg~v~iwd~~~~-----~~~--~~~~~-h~~~v~~~~~~~~~- 252 (500)
. ......|.++.|.+...+.. +..++.-..+|.++-|-+..+ +.. ..+.. +...|.++.|++..
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~ 160 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR 160 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence 1 11234566666655443222 346777778888877765321 222 22333 35689999998874
Q ss_pred eEEEEeCC-CeEEEEeCCCCeeEEEeecCCceEEEEEe---cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 253 VIYTGSQD-CTIKVWETTQGKLIRELKGHGHWVNSLAL---STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 253 ~l~t~~~d-g~i~lwd~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
.|+.||.. ..-..+.. ....+.+-.+ .|-+.... ..
T Consensus 161 LLlVgG~~~~~~~~s~a-----------~~~GLtaWRiL~~~Pyyk~v~-~~---------------------------- 200 (282)
T PF15492_consen 161 LLLVGGCEQNQDGMSKA-----------SSCGLTAWRILSDSPYYKQVT-SS---------------------------- 200 (282)
T ss_pred EEEEeccCCCCCccccc-----------cccCceEEEEcCCCCcEEEcc-cc----------------------------
Confidence 45555432 21000000 0000111000 01000000 00
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
++.+...+ .+..+|.+.. .....+....++.|..|..||||.+||+...+|.|.+|++.+.++...++-++.|
T Consensus 201 ~~~~~~~~--~~~~~~~~~~-~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eqP 273 (282)
T PF15492_consen 201 EDDITASS--KRRGLLRIPS-FKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQP 273 (282)
T ss_pred Cccccccc--cccceeeccc-eeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhCC
Confidence 00000000 0011221110 0000111234577999999999999999999999999999988877776655554
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.80 E-value=1.8e-05 Score=73.48 Aligned_cols=236 Identities=14% Similarity=0.107 Sum_probs=131.5
Q ss_pred EcCCCCeEEEEeC----------CCcEEEEeCCCCceeEEecCCCC-------CEEEEEEcCCCCEEEEEe-C-CCeEEE
Q 010816 116 FSPDGRQLASGSG----------DTTVRLWDLNTQTPMFKCTGHKN-------WVLCIAWSADGKHLVSGS-K-AGELQC 176 (500)
Q Consensus 116 ~sp~~~~lat~~~----------d~~i~iwd~~~~~~~~~~~~h~~-------~v~~v~~s~~~~~l~s~~-~-d~~i~~ 176 (500)
++||++.|+.+.. +..|.+||..+.+.+..+.-... ....++++|||++|+... . +..|.+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 9999998887755 78999999999988876653222 234788999999998765 3 689999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEE----EEecCccccEEEE-EeCC
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCV----ICLSGHTLAVTCV-KWGG 250 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~----~~~~~h~~~v~~~-~~~~ 250 (500)
.|+.+++.....-..-...+.. . ....+..-+.||......+.. ++.. ..+.+...++..- .|.+
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~--t-------~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFP--T-------ANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEE--e-------cCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 9999887654321111111100 0 001222233444443332221 1110 0111101111000 2233
Q ss_pred -CCeEEEEeCCCeEEEEeCCCCee-----EEEeecC-------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816 251 -DGVIYTGSQDCTIKVWETTQGKL-----IRELKGH-------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (500)
Q Consensus 251 -~~~l~t~~~dg~i~lwd~~~~~~-----~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (500)
++..+..+..|+|.+-|+..... ...+... .....-++++++
T Consensus 204 ~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d------------------------- 258 (352)
T TIGR02658 204 KSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRA------------------------- 258 (352)
T ss_pred CCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCC-------------------------
Confidence 56555555559999999654321 1111100 000111333322
Q ss_pred HHhhhhhcCCCCcEEEE-ee---------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEe-CCCcEE
Q 010816 318 LERYNKIKGNAPERLVS-GS---------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS-FDKSIK 385 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~s-~s---------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs-~Dg~i~ 385 (500)
+.++.. .. ..+.|.++|....+.......+ ..+..++++|||+ +|.+.. .++.|.
T Consensus 259 -----------g~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 259 -----------RDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLY 325 (352)
T ss_pred -----------CCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEE
Confidence 122332 21 1246888887655444333444 3688999999999 777665 578899
Q ss_pred EEeCCCCceEEEE
Q 010816 386 LWNGTTGKFVAVF 398 (500)
Q Consensus 386 lwd~~~~~~~~~~ 398 (500)
++|..+++.+...
T Consensus 326 ViD~~t~k~i~~i 338 (352)
T TIGR02658 326 IFDAETGKELSSV 338 (352)
T ss_pred EEECcCCeEEeee
Confidence 9999999988776
No 281
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.80 E-value=6.8e-05 Score=71.14 Aligned_cols=245 Identities=17% Similarity=0.218 Sum_probs=141.5
Q ss_pred EEEEEEcCCCCeEEEEeC----CCcEEEEeCCCC--ce--eEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCC
Q 010816 111 VLSVAFSPDGRQLASGSG----DTTVRLWDLNTQ--TP--MFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQT 181 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~----d~~i~iwd~~~~--~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~ 181 (500)
-..++++|++++|.+... ++.|..|++... .. +............++++|++++|+++.+ +|.|.++++..
T Consensus 39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~ 118 (345)
T PF10282_consen 39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD 118 (345)
T ss_dssp ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence 445789999999998876 578999988754 22 2222223445677999999999999875 79999999876
Q ss_pred -CCccccc-cc-----------CcccceEEEEeeeeecCCCCceEEE-EeCCCcEEEEECCCCe--EE--EEec-Ccccc
Q 010816 182 -GKPSGNP-LS-----------GHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVSLRK--CV--ICLS-GHTLA 242 (500)
Q Consensus 182 -~~~~~~~-~~-----------~~~~~v~~~~~~~~~~~~~~~~~~s-~s~dg~v~iwd~~~~~--~~--~~~~-~h~~~ 242 (500)
|...... .. .......++.+.| +++.+++ .-....|++|++.... .. ..+. .....
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-----dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-----DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-----TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECC-----CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 3221110 00 0112234455544 4444444 3334578899886554 21 1111 22234
Q ss_pred EEEEEeCCCCe--EEEEeCCCeEEEEeCC--CCee--EEEeecC------CceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 243 VTCVKWGGDGV--IYTGSQDCTIKVWETT--QGKL--IRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 243 v~~~~~~~~~~--l~t~~~dg~i~lwd~~--~~~~--~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
-+.+.|++++. .++...+++|.++++. ++.. ++.+... ......+.++++
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd------------------ 255 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD------------------ 255 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT------------------
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC------------------
Confidence 56788999873 3456678899999887 4432 2222110 012334444443
Q ss_pred HHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEEEcCCCCCCCce---eeecccCcEEEEEECCCCCEEEEEe-CCCcEE
Q 010816 311 EEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVSKQPKT---RMTGHQQLVNHVYFSPDGQWVASAS-FDKSIK 385 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~wd~~~~~~~~~---~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~ 385 (500)
+.+ .++.....+|.+|++........ .........+.++++|+|++|+++. .++.|.
T Consensus 256 ------------------g~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~ 317 (345)
T PF10282_consen 256 ------------------GRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVS 317 (345)
T ss_dssp ------------------SSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred ------------------CCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEE
Confidence 223 34445677888998743322211 2222234578999999999998776 467899
Q ss_pred EEeC--CCCceEE
Q 010816 386 LWNG--TTGKFVA 396 (500)
Q Consensus 386 lwd~--~~~~~~~ 396 (500)
+|++ .+|.+..
T Consensus 318 vf~~d~~tG~l~~ 330 (345)
T PF10282_consen 318 VFDIDPDTGKLTP 330 (345)
T ss_dssp EEEEETTTTEEEE
T ss_pred EEEEeCCCCcEEE
Confidence 9865 5676543
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.80 E-value=6.7e-05 Score=79.43 Aligned_cols=271 Identities=16% Similarity=0.217 Sum_probs=142.8
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC----C---------C--cee--------EE-------------------
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN----T---------Q--TPM--------FK------------------- 145 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~----~---------~--~~~--------~~------------------- 145 (500)
...|.+++||||+.+||...+++++.+-+-. . + +++ ..
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 4589999999999999999999888775321 0 0 000 00
Q ss_pred ------ecCCCCCEEEEEEcCCCCEEEEEeC---C---CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceE
Q 010816 146 ------CTGHKNWVLCIAWSADGKHLVSGSK---A---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (500)
Q Consensus 146 ------~~~h~~~v~~v~~s~~~~~l~s~~~---d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 213 (500)
+. +...-..++|-.||.++|+.+. . ..+|+|+.+ |.... ....-.+--.+++|.|.. ..+
T Consensus 200 ~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~s-tSE~v~gLe~~l~WrPsG-----~lI 271 (928)
T PF04762_consen 200 KVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQS-TSEPVDGLEGALSWRPSG-----NLI 271 (928)
T ss_pred ccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEe-ccccCCCccCCccCCCCC-----CEE
Confidence 11 2334567899999999998764 2 479999976 43211 111111222457888743 455
Q ss_pred EEEeC---CCcEEEEEC---CCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeE--EEeecC-CceE
Q 010816 214 VSASK---DGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI--RELKGH-GHWV 284 (500)
Q Consensus 214 ~s~s~---dg~v~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~--~~~~~~-~~~v 284 (500)
++... ...|.+|.- +.+.....+......|..+.|++|+.+++......|.+|-..+.... +++... ...+
T Consensus 272 A~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~~~~~~~~ 351 (928)
T PF04762_consen 272 ASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIRFSSSESV 351 (928)
T ss_pred EEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEEccCCCCC
Confidence 55432 245556652 22222222224556789999999987665555556999987765532 222211 2223
Q ss_pred EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC-CCCcEEEEeeCCC-eEEEEcCCCCC--CCc-eeeecc
Q 010816 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG-NAPERLVSGSDDF-TMFLWEPAVSK--QPK-TRMTGH 359 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~s~d~-~v~~wd~~~~~--~~~-~~~~~h 359 (500)
..+.|++..+.........+......-. .....-.+ .+.+.-..+--|| ++++-..+... .|. .....-
T Consensus 352 ~~~~Wdpe~p~~L~v~t~~g~~~~~~~~------~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~ 425 (928)
T PF04762_consen 352 NFVKWDPEKPLRLHVLTSNGQYEIYDFA------WDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELEL 425 (928)
T ss_pred CceEECCCCCCEEEEEecCCcEEEEEEE------EEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcC
Confidence 3466776543322111111100000000 00000000 0001111111222 23333322211 111 112233
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
+..|.+++|++++..+|+-..||.|.+|.....
T Consensus 426 ~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 426 PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 577999999999988999999999999986543
No 283
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.79 E-value=1.1e-08 Score=62.38 Aligned_cols=37 Identities=54% Similarity=0.997 Sum_probs=34.5
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEe
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWD 136 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd 136 (500)
+..++.+|.+.|.+++|+|++.+|++|+.|++|+|||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567889999999999999999999999999999997
No 284
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=4.7e-06 Score=78.17 Aligned_cols=90 Identities=21% Similarity=0.307 Sum_probs=60.6
Q ss_pred cEEEEEEcCCCCeEEEEeC-----------CCcEEEEeCCCCceeEEecCCCC--CE-EEEEEcCCCCEEEEEeCCCeEE
Q 010816 110 AVLSVAFSPDGRQLASGSG-----------DTTVRLWDLNTQTPMFKCTGHKN--WV-LCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~-----------d~~i~iwd~~~~~~~~~~~~h~~--~v-~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
.|.-+.|||+.++|+|-+. ...++|||+.+|..+..+..... .+ .-..||.|++++|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4888999999999998752 25799999999987765543211 12 23689999999987665 5788
Q ss_pred EEeCCCCCcccccccCc---ccceEEEEeeee
Q 010816 176 CWDPQTGKPSGNPLSGH---KKWITGISWEPV 204 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~---~~~v~~~~~~~~ 204 (500)
||+..+-.. +..- -..|....|+|.
T Consensus 330 IyEtpsf~l----ld~Kslki~gIr~FswsP~ 357 (698)
T KOG2314|consen 330 IYETPSFML----LDKKSLKISGIRDFSWSPT 357 (698)
T ss_pred EEecCceee----ecccccCCccccCcccCCC
Confidence 887654211 1111 123556677774
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=1.5e-08 Score=61.86 Aligned_cols=38 Identities=34% Similarity=0.785 Sum_probs=35.4
Q ss_pred cccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 462 KLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 462 ~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+++.++.+|.+.|++++|+|++..|++++.|++|++|+
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45677889999999999999999999999999999996
No 286
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.75 E-value=8.5e-06 Score=78.97 Aligned_cols=262 Identities=12% Similarity=0.086 Sum_probs=150.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc-ce
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLC-IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WI 196 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~-v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v 196 (500)
++..++.++.++.+.-+|.++++.+....... .+.+ ... .+..++.+..++.+..+|.++|+..-........ ..
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 35567778889999999999998877654322 2221 111 2456777888999999999999764322111000 00
Q ss_pred EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc----c---cEEEEEeC---CCCeEEEEeCCCeEEEE
Q 010816 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT----L---AVTCVKWG---GDGVIYTGSQDCTIKVW 266 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~----~---~v~~~~~~---~~~~l~t~~~dg~i~lw 266 (500)
.. .-.|.. ....++.++.++.+...|..+++.+....-.. . ....+..+ .++.++.++.+|.+.-+
T Consensus 196 ~~-~~sP~v---~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~al 271 (394)
T PRK11138 196 RG-ESAPAT---AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVAL 271 (394)
T ss_pred cC-CCCCEE---ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEE
Confidence 00 001211 12356677888999999988887654432100 0 00000011 25678888899999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|..+|+.+....... ...+. ..++.++.++.++.+...|.
T Consensus 272 d~~tG~~~W~~~~~~--~~~~~--------------------------------------~~~~~vy~~~~~g~l~ald~ 311 (394)
T PRK11138 272 DLRSGQIVWKREYGS--VNDFA--------------------------------------VDGGRIYLVDQNDRVYALDT 311 (394)
T ss_pred ECCCCCEEEeecCCC--ccCcE--------------------------------------EECCEEEEEcCCCeEEEEEC
Confidence 999998765432110 00000 01345777778888888887
Q ss_pred CCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816 347 AVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (500)
Q Consensus 347 ~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 425 (500)
...+...... ..+. ...+..+ .+..|..++.||.+...|..+|+.+...+-....+..-
T Consensus 312 ~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~----------------- 371 (394)
T PRK11138 312 RGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSE----------------- 371 (394)
T ss_pred CCCcEEEcccccCCC-cccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeC-----------------
Confidence 5443211110 0110 1111111 25677888999999999999999876655332222110
Q ss_pred eeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 426 VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 426 ~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
.. ..+..|+.++.||.++.++.
T Consensus 372 ---------P~--~~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 372 ---------PV--VADDKLLIQARDGTVYAITR 393 (394)
T ss_pred ---------CE--EECCEEEEEeCCceEEEEeC
Confidence 00 12447888899998887753
No 287
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=8.3e-06 Score=87.75 Aligned_cols=163 Identities=11% Similarity=0.077 Sum_probs=96.2
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCce-------eeec------ccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKT-------RMTG------HQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~-------~~~~------h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
..+++.+.++.|++||......... ...+ .-.....++++|+|+ ++++-+.++.|++||+.++...
T Consensus 696 ~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 696 KVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred eEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 4556777788899998643321000 0001 112356799999998 5556667799999999887542
Q ss_pred EEEeCCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-------
Q 010816 396 AVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL------- 467 (500)
Q Consensus 396 ~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~------- 467 (500)
....+... +.....+... .... ....-.....++++++|.++++-+.++.|++||..++......
T Consensus 776 ~~~gg~~~~~~~l~~fG~~------dG~g-~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~ 848 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDH------DGVG-SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF 848 (1057)
T ss_pred EEEecccccCcccccccCC------CCch-hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence 21111100 0000000000 0000 0000011223467899998888889999999999876653211
Q ss_pred ------cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 468 ------PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 468 ------~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+.......++++++|+.+++-+.+++|++|+
T Consensus 849 ~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 849 KDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred CCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence 11223567899999999889989999999996
No 288
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=2e-07 Score=78.90 Aligned_cols=116 Identities=20% Similarity=0.284 Sum_probs=79.7
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEe--CCcc--
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR--GHVG-- 403 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~--~h~~-- 403 (500)
...+++|+.||.+-+||.+....+...+..|+..++.+.|+| ++..|.+++.||.+..||..+.-+-...+ +|..
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WL 271 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWL 271 (319)
T ss_pred ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccc
Confidence 456888999999999999888778888999999999999999 67899999999999999987522211111 1111
Q ss_pred ---cEEE-EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 404 ---PVYQ-IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 404 ---~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
++.+ +..+.+. .+...++.+|.--|..|++|+.-+.|++++
T Consensus 272 sgD~v~s~i~i~~ll-------------~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 272 SGDPVKSRIEITSLL-------------PSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred cCCcccceEeeeccc-------------cccceeeeeeeccCceEEeccccceEEEec
Confidence 1111 1111100 011223334555678899999888888875
No 289
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.69 E-value=4.7e-08 Score=91.09 Aligned_cols=204 Identities=14% Similarity=0.259 Sum_probs=128.8
Q ss_pred EEecCccccEEEEE-eCCCCeEEEEeCCCeEEEEeCCC-------CeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 234 ICLSGHTLAVTCVK-WGGDGVIYTGSQDCTIKVWETTQ-------GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 234 ~~~~~h~~~v~~~~-~~~~~~l~t~~~dg~i~lwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
..+.||+..|..++ .+.++.+++++.|.+|++|.++. ..+..++..|..+|.++.+-.+
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~------------- 795 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLAD------------- 795 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeec-------------
Confidence 34678988888764 34556799999999999998753 1244556677777777655432
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee----ecccCcEEEEEECCCCCEEEEE-eC
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASA-SF 380 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~----~~h~~~v~~l~~sp~g~~lasg-s~ 380 (500)
.-...|.|+.+.+||+.......... .+....|.|+- +-+...+..| +.
T Consensus 796 -------------------------lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 796 -------------------------LRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSA 849 (1034)
T ss_pred -------------------------cceeeeccCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccc
Confidence 11345678999999986543322111 11122344432 2234444444 77
Q ss_pred CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
..+|+++|.+.++....++..+.+... .....++..+.|..+|.|=..|.|-+.|.++
T Consensus 850 eSTVKl~DaRsce~~~E~kVcna~~Pn----------------------a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~ 907 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTCELKVCNAPGPN----------------------ALTRAIAVADKGNKLAAALSNGCIAILDARN 907 (1034)
T ss_pred hhhheeeecccccceeeEEeccCCCCc----------------------hheeEEEeccCcchhhHHhcCCcEEEEecCC
Confidence 899999999999887766643222110 0011124578999999999999999999999
Q ss_pred ccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE-ec
Q 010816 461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL-WM 499 (500)
Q Consensus 461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i-W~ 499 (500)
|+.+..++.-.-....++ -|..+.|+....|.++-+ |.
T Consensus 908 G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 908 GKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred CceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeeh
Confidence 998776654433334443 244456666666666666 54
No 290
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.68 E-value=5.4e-07 Score=86.79 Aligned_cols=252 Identities=18% Similarity=0.270 Sum_probs=151.8
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
.....|++|+.+..++|+|+.||.+++-.+.+...-. .... ++..+ +
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-----~~~g-----------------laa~s-----------n 60 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-----NKSG-----------------LAAAS-----------N 60 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-----cccc-----------------ccccc-----------c
Confidence 3457899999999999999999999999876543211 0000 11111 1
Q ss_pred CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEe--ecCCceEEEEEecCcceeeeccccCCCCC
Q 010816 230 RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (500)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (500)
-..-+++.||+..|.-+.|+.+.. |-+...+|.|.+|-+-.|....++ ......|.++++..++.-....+.
T Consensus 61 LsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe----- 135 (1189)
T KOG2041|consen 61 LSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE----- 135 (1189)
T ss_pred cchhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-----
Confidence 111234679999999999987654 666778999999998888765444 234556777777665321111110
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l 386 (500)
...++.|+-||. +||.-. +.+. ....+.|++|.+.+..+-..|.+.+
T Consensus 136 ----------------------DGavIVGsvdGN-RIwgKe--------Lkg~--~l~hv~ws~D~~~~Lf~~ange~hl 182 (1189)
T KOG2041|consen 136 ----------------------DGAVIVGSVDGN-RIWGKE--------LKGQ--LLAHVLWSEDLEQALFKKANGETHL 182 (1189)
T ss_pred ----------------------cCCEEEEeeccc-eecchh--------cchh--eccceeecccHHHHHhhhcCCcEEE
Confidence 113556666665 566422 1111 1346789999998888888899999
Q ss_pred EeCCCCce--------EE---EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEE
Q 010816 387 WNGTTGKF--------VA---VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKV 455 (500)
Q Consensus 387 wd~~~~~~--------~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~i 455 (500)
||-+..-. +. .+......+..+.+. . ....-..|+.-.||.+-..|.+.|
T Consensus 183 ydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~-------------~------g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 183 YDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN-------------T------GPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred ecccccHHHhhhhceEEeeeeeecCCCccccceeec-------------c------CccccCCCCCCEEEEEEcCceehh
Confidence 99764211 10 000000011111110 0 000011467788999999998887
Q ss_pred EECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 456 WDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 456 wd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
-.-... +..-.-.| -.|....|+++|..||.+|.|.
T Consensus 244 MR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~ 280 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDS 280 (1189)
T ss_pred hhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcc
Confidence 644332 22111112 3577889999999999998764
No 291
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.67 E-value=1.7e-05 Score=76.72 Aligned_cols=181 Identities=15% Similarity=0.115 Sum_probs=105.1
Q ss_pred cEEEEEeCCCCe--EEEEeC---CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 242 AVTCVKWGGDGV--IYTGSQ---DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 242 ~v~~~~~~~~~~--l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
......|+||+. ++..+. +..|.++|+.+|+...... .........++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~---------------------- 245 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS---------------------- 245 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC----------------------
Confidence 566788999884 443333 3568889998876544332 233334455666531
Q ss_pred HHHhhhhhcCCCCcEEEEeeC--CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-C--cEEEEeCCC
Q 010816 317 ALERYNKIKGNAPERLVSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-K--SIKLWNGTT 391 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~--d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-g--~i~lwd~~~ 391 (500)
..+++.+. +..|+++|+.... ...+..+........|+|||+.|+-.+.. + .|++.|+.+
T Consensus 246 -------------~la~~~~~~g~~~Iy~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 246 -------------KLLLTMAPKGQPDIYLYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred -------------EEEEEEccCCCcEEEEEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 12223332 3456666754332 23344444333456899999988766542 3 577778777
Q ss_pred CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC---------CcEEEEECCCcc
Q 010816 392 GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---------STLKVWDIRTQK 462 (500)
Q Consensus 392 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---------~~v~iwd~~~~~ 462 (500)
++....... +. ....|||+|+.|+..+.. ..|.+.|+.+++
T Consensus 311 g~~~rlt~~--g~----------------------------~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 311 GSVEQVVFH--GK----------------------------NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCeEeCccC--CC----------------------------cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 654322110 00 001689999988876654 367888888776
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
.. .+... .......|+|||+.|+..+.+
T Consensus 361 ~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 361 IR-RLTAN-GVNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred eE-ECCCC-CCcCCeEECCCCCEEEEEEcc
Confidence 53 33322 122357899999988766543
No 292
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.67 E-value=1e-07 Score=85.70 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=81.7
Q ss_pred EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeee
Q 010816 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (500)
Q Consensus 125 t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (500)
.++....+.+|....+.+. ..-||-.-++.|+|+||+++++++..|.+|++=....--.+....-||+..|..++..+
T Consensus 127 kagD~~~~di~s~~~~~~~-~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE-PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred ecCCceeeeeecccccCcc-hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-
Confidence 3455667778877654433 34589999999999999999999999999999765443333345678999999988654
Q ss_pred ecCCCCceEEEEeCCCcEEEEECCCCeEEEEe
Q 010816 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICL 236 (500)
Q Consensus 205 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~ 236 (500)
...+++||.|+++++||+++++++.++
T Consensus 205 -----~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 -----NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred -----CceeeecCCCCcEEEEecccCCccccc
Confidence 345899999999999999999887544
No 293
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=2.3e-06 Score=83.39 Aligned_cols=262 Identities=15% Similarity=0.143 Sum_probs=165.2
Q ss_pred eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-------------eEEEEeCCCe
Q 010816 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-------------VIYTGSQDCT 262 (500)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------------~l~t~~~dg~ 262 (500)
-.++.|+|. +.++-|+. ..|.+-|..+-+.+..+..|...|+.+.|.+.. .|+++.-.|.
T Consensus 18 ~~A~Dw~~~------GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~Gr 90 (1062)
T KOG1912|consen 18 RNAADWSPS------GLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGR 90 (1062)
T ss_pred ccccccCcc------ceEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCc
Confidence 456777663 35555554 578888999999999999999999999997522 4677888899
Q ss_pred EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816 263 IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~ 342 (500)
|.+||...+..+..+..+..++..+.+-+.. ....+.++.-....++.
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~r--------------------------------d~Srd~LlaIh~ss~lv 138 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPAR--------------------------------DDSRDVLLAIHGSSTLV 138 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeecc--------------------------------CcchheeEEecCCcEEE
Confidence 9999999888888888888888777665421 01124566666677889
Q ss_pred EEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCC-------CceEEEEeCCcccEEEEEeeeee
Q 010816 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTT-------GKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
+|+...+......-.+| ....|+.+.| |.+.+..-+..|.+-+-+.-. |+...+-..|...- .+..+...
T Consensus 139 LwntdtG~k~Wk~~ys~-~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~-~lere~at 216 (1062)
T KOG1912|consen 139 LWNTDTGEKFWKYDYSH-EILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLA-HLERETAT 216 (1062)
T ss_pred EEEccCCceeeccccCC-cceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchh-hhhhhhhc
Confidence 99866554433333333 3456788898 777787777777776665321 22222222222100 00000000
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC--EEEEEeCC
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKD 492 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~s~~~D 492 (500)
. ...+.......+......++|+|.-+-++-...-..+.++|++-...+...+-..+.+.-++|-|+++ .|++...|
T Consensus 217 ~-ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~n 295 (1062)
T KOG1912|consen 217 G-NSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSN 295 (1062)
T ss_pred c-ccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecC
Confidence 0 00000000000001123356788766555556677899999988777776666666677788888754 68999999
Q ss_pred CcEEEec
Q 010816 493 RVLKLWM 499 (500)
Q Consensus 493 ~~v~iW~ 499 (500)
|.+.||.
T Consensus 296 G~ltirv 302 (1062)
T KOG1912|consen 296 GRLTIRV 302 (1062)
T ss_pred CeEEEEE
Confidence 9999984
No 294
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.63 E-value=2.7e-05 Score=69.81 Aligned_cols=225 Identities=18% Similarity=0.118 Sum_probs=128.7
Q ss_pred CCcEEEEeCCCCceeEEecCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 129 DTTVRLWDLNTQTPMFKCTGH--KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
+|+|..||..+++.+....-- .....+. ..++++.+++++.++.|..||..+|+.......... +... |.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~---~~-- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA---PV-- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG---EE--
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce---ee--
Confidence 688999999888887765421 1222221 223567888889999999999999975432111100 0000 11
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEe-cCc----c-ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecC
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICL-SGH----T-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGH 280 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~h----~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~ 280 (500)
.....++.++.++.++.+|..+++.+... ... . .......+. ++.++.+..++.|..+|..+|+.+......
T Consensus 74 -~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~ 151 (238)
T PF13360_consen 74 -VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG 151 (238)
T ss_dssp -EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS
T ss_pred -ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC
Confidence 12346677778889999999999988763 322 1 111122222 457888888999999999999988776543
Q ss_pred CceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc
Q 010816 281 GHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH 359 (500)
Q Consensus 281 ~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h 359 (500)
.... ..+....+... ...- ....+..++.++.+.-+|........ ...
T Consensus 152 ~~~~~~~~~~~~~~~~---------------------------~~~~-~~~~v~~~~~~g~~~~~d~~tg~~~w-~~~-- 200 (238)
T PF13360_consen 152 EPRGSSPISSFSDING---------------------------SPVI-SDGRVYVSSGDGRVVAVDLATGEKLW-SKP-- 200 (238)
T ss_dssp TT-SS--EEEETTEEE---------------------------EEEC-CTTEEEEECCTSSEEEEETTTTEEEE-EEC--
T ss_pred CCCCCcceeeeccccc---------------------------ceEE-ECCEEEEEcCCCeEEEEECCCCCEEE-Eec--
Confidence 3211 00000000000 0000 01245566666643333765543211 111
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
...+.. ...+++..|+.++.++.|..||+++|+.+
T Consensus 201 ~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 201 ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 112222 13467788888889999999999999875
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.59 E-value=8.2e-08 Score=84.46 Aligned_cols=129 Identities=14% Similarity=0.226 Sum_probs=100.7
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCC
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~ 180 (500)
.++.|.+++|...++++..|+..|.|-..|+... .+...+ -|...|+|+..-. ++.+|++.+.+|+|++||.+
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 4568999999999999999999999999999754 233333 5889999988766 67899999999999999987
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS 237 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~ 237 (500)
.-++.. ......+.|+..+..|.+.....+.+++++.|...|||.+..+..+.++.
T Consensus 330 ~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 330 ATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 544311 12223344566667777877778889999999999999999988776654
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.57 E-value=2.8e-07 Score=81.17 Aligned_cols=127 Identities=16% Similarity=0.224 Sum_probs=95.0
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCC---CceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce---EEEEeCC
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKF---VAVFRGH 401 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~---~~~~~~h 401 (500)
...+..|..+|.|...|++...+ ....-.-|...|+++..-. ++++|.+.+.+|+|++||.+--++ +..+.||
T Consensus 264 ~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH 343 (425)
T KOG2695|consen 264 DNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH 343 (425)
T ss_pred CCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc
Confidence 35688999999999999875421 1223345888899987766 789999999999999999987666 8899999
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc----CEEEE
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD----EVFAV 477 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~----~V~~l 477 (500)
.....-+.+ -..+....+++++.|-..|||.+..+.++.+++--.. .++++
T Consensus 344 vN~~a~l~~-------------------------~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv 398 (425)
T KOG2695|consen 344 VNLSAYLPA-------------------------HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSV 398 (425)
T ss_pred ccccccccc-------------------------ccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccce
Confidence 765433322 1256677888999999999999999988877654332 34556
Q ss_pred EEc
Q 010816 478 DWS 480 (500)
Q Consensus 478 ~~s 480 (500)
+|.
T Consensus 399 ~~~ 401 (425)
T KOG2695|consen 399 AFD 401 (425)
T ss_pred ehh
Confidence 654
No 297
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.57 E-value=7.4e-07 Score=75.56 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=90.5
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc-CcccceEEEEeeeeecCCCCceEEEEeCC------C
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS-GHKKWITGISWEPVHLNAPCRRFVSASKD------G 220 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~s~s~d------g 220 (500)
.|..+-.+-.-+-.+..++++..||.+.+.+.+.-........ -|.+ .++..... ...++..+.- +
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~-----~as~~~~~--~~~~i~s~~~g~~n~~d 159 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSG-----SASRKICR--HGNSILSGGCGNWNAQD 159 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhccccccc-----ccccceee--cccEEecCCcceEeecc
Confidence 3443333333333467899999999999998764211110000 0100 00000000 0123332222 3
Q ss_pred cEEEEECCCCeEEEEecCccccEEEEEeCC--CCeEEEEeCCCeEEEEeCCCCee-EEEeecCCceEEEEEecCcceeee
Q 010816 221 DARIWDVSLRKCVICLSGHTLAVTCVKWGG--DGVIYTGSQDCTIKVWETTQGKL-IRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
..+.|+++..+....-......|++++-.| ...+++|+.||.+-+||.+.... ...++.|+.++..+-|+|.
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk----- 234 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK----- 234 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCC-----
Confidence 445666654333222122223377776655 45788999999999999987643 2345677777877777764
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
.++.|++++.||.+..||..
T Consensus 235 ------------------------------~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 235 ------------------------------NPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ------------------------------CchheeEecCCCcEEEEcCC
Confidence 36789999999999999964
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.55 E-value=0.00058 Score=61.51 Aligned_cols=219 Identities=18% Similarity=0.182 Sum_probs=123.0
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC-CCCeEEEEeCCCeEEEEeCCCCeeEEEeec-----CCceE
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWV 284 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~-----~~~~v 284 (500)
..+++--..+.|..|+..+++........ + ..+.+. +++.++.+..++. .++|..+++....... .....
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~-~G~~~~~~~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGEVEVIDLPG--P-NGMAFDRPDGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEESSS--E-EEEEEECTTSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEEEEcCCCEEEEEECCCCeEEEEecCC--C-ceEEEEccCCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCC
Confidence 45566666788999998887654322222 3 344444 6788888877554 5559888865443332 23455
Q ss_pred EEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEE
Q 010816 285 NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVN 364 (500)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~ 364 (500)
+.+++.++..+-.+........ ....+.+..++.. . ....+...-...+
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~----------------------------~~~~g~v~~~~~~-~--~~~~~~~~~~~pN 137 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGAS----------------------------GIDPGSVYRIDPD-G--KVTVVADGLGFPN 137 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTT----------------------------CGGSEEEEEEETT-S--EEEEEEEEESSEE
T ss_pred ceEEEcCCCCEEEEecCCCccc----------------------------cccccceEEECCC-C--eEEEEecCccccc
Confidence 6666666543221111000000 0000445555543 1 1222223345578
Q ss_pred EEEECCCCCEEE-EEeCCCcEEEEeCCCCc--eE--EEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 365 HVYFSPDGQWVA-SASFDKSIKLWNGTTGK--FV--AVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 365 ~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~--~~--~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
.++|+|+++.|. +-+..+.|..+++.... .. ..+. ..... ...-.+++.
T Consensus 138 Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------g~pDG~~vD 192 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------------GYPDGLAVD 192 (246)
T ss_dssp EEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------------CEEEEEEEB
T ss_pred ceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------------cCCCcceEc
Confidence 999999998765 56677889998875321 11 1110 00000 001123567
Q ss_pred CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE-cCCCCEEEEEe
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGG 490 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg~~l~s~~ 490 (500)
.+|++.++....+.|.++|.. ++.+..+.--...+++++| .++.+.|+..+
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 889988888889999999987 7766655444458899999 57777776554
No 299
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.54 E-value=0.00015 Score=67.23 Aligned_cols=140 Identities=19% Similarity=0.180 Sum_probs=103.3
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCC-cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDT-TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~-~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
-||.+.|.-..+.-+++-++.|..|| .+-|+|..+++.. .....-+.|.++..+++|++++.+-....|.+.|+.+|+
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 47888899999999999999999999 8999999887643 344556779999999999999998888889999999987
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (500)
... .-....+.|+.+.|+|. .+.++-+-.+ ..|+++|+..++....... ++.=.+-+|.+|+
T Consensus 435 v~~-idkS~~~lItdf~~~~n-----sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~-ta~DfsPaFD~d~ 500 (668)
T COG4946 435 VRL-IDKSEYGLITDFDWHPN-----SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP-TAYDFSPAFDPDG 500 (668)
T ss_pred eeE-ecccccceeEEEEEcCC-----ceeEEEecCcceeeeeEEEEecCCCeEEEecCC-cccccCcccCCCC
Confidence 532 23445678899999873 3455554444 4789999988776543221 1112234566666
No 300
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.53 E-value=0.00026 Score=63.56 Aligned_cols=265 Identities=14% Similarity=0.199 Sum_probs=148.5
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeC---CCcEEEEeCCC--CceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-CeEE
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNT--QTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-GELQ 175 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~---d~~i~iwd~~~--~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~ 175 (500)
+..+.+..+-++|+|+.+.|.++.. +|.|.-|.++. ++..+ .......+-.-++++++|++|+++.+. |.|.
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 3456777889999999999988854 57788887764 33221 111122334789999999999998875 7788
Q ss_pred EEeCCC-CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-
Q 010816 176 CWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV- 253 (500)
Q Consensus 176 ~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~- 253 (500)
++-+++ |.. ..+.++.-+ ...+-....-..| +.+..+.|++.
T Consensus 115 v~p~~~dG~l---------~~~v~~~~h------------------------~g~~p~~rQ~~~h---~H~a~~tP~~~~ 158 (346)
T COG2706 115 VYPLQADGSL---------QPVVQVVKH------------------------TGSGPHERQESPH---VHSANFTPDGRY 158 (346)
T ss_pred EEEcccCCcc---------ccceeeeec------------------------CCCCCCccccCCc---cceeeeCCCCCE
Confidence 887754 221 111111000 0000000001112 55667888884
Q ss_pred EEEEe-CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 254 IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 254 l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
|++.+ .-..|.+|++..|++...-.
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~------------------------------------------------------ 184 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADP------------------------------------------------------ 184 (346)
T ss_pred EEEeecCCceEEEEEcccCccccccc------------------------------------------------------
Confidence 44432 22357778776554321100
Q ss_pred EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCC-ceEEEEeCCcccEEEEEe
Q 010816 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~ 410 (500)
..+ .....-+.|.|+|++++..... .+++|-+|..... ..+..++.+.
T Consensus 185 ---------------------~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~-------- 234 (346)
T COG2706 185 ---------------------AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTID-------- 234 (346)
T ss_pred ---------------------ccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeec--------
Confidence 000 0112346789999999886655 4899999998763 2222221110
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCC--ccc--cccccCcccCEEEEEEcCCCCE
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRT--QKL--KQDLPGHADEVFAVDWSPDGEK 485 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~--~~~--~~~~~~h~~~V~~l~~s~dg~~ 485 (500)
..|.. .......+.+..++||++|.++.. ...|-+|.+.. +++ ....+-+...--.+.|+|+|++
T Consensus 235 ------tlP~d----F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 235 ------TLPED----FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred ------cCccc----cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 00111 112233445567999999998763 23677776643 322 2222223222357789999999
Q ss_pred EEEEeCCC-cEEEe
Q 010816 486 VASGGKDR-VLKLW 498 (500)
Q Consensus 486 l~s~~~D~-~v~iW 498 (500)
|+.++.|+ .|.++
T Consensus 305 Liaa~q~sd~i~vf 318 (346)
T COG2706 305 LIAANQKSDNITVF 318 (346)
T ss_pred EEEEccCCCcEEEE
Confidence 99988764 45554
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.52 E-value=9.5e-05 Score=66.25 Aligned_cols=220 Identities=15% Similarity=0.109 Sum_probs=127.8
Q ss_pred CCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816 219 DGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
+|+|..||..+++.+....-- .....+.....++.+++++.++.+..||..+|+.+..............
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~-------- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPV-------- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEE--------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceee--------
Confidence 678899999999887765321 1222222333467888889999999999999998776653211000000
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-c--CcEEEEEECCCCC
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-Q--QLVNHVYFSPDGQ 373 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~--~~v~~l~~sp~g~ 373 (500)
.....++.++.++.++.+|....+......... + ..........++.
T Consensus 74 ------------------------------~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 123 (238)
T PF13360_consen 74 ------------------------------VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGD 123 (238)
T ss_dssp ------------------------------EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETT
T ss_pred ------------------------------ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecC
Confidence 013456667788888888866554433311111 0 1112222233478
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeCCcccE-EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc
Q 010816 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPV-YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST 452 (500)
Q Consensus 374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~ 452 (500)
.++.+..++.|..+|+++|+.+..+.....+. ..+.. ....... ....++ .+..++.++.
T Consensus 124 ~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~-----------------~~~~~~~-~~~~~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 124 RLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS-----------------FSDINGS-PVISDG-RVYVSSGDGR 184 (238)
T ss_dssp EEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE-----------------ETTEEEE-EECCTT-EEEEECCTSS
T ss_pred EEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee-----------------ecccccc-eEEECC-EEEEEcCCCe
Confidence 88888889999999999999987776543221 00000 0000000 012234 6666666775
Q ss_pred -EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 453 -LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 453 -v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.+ |+++++.+-... ...+..+ ..+++..|+.++.|+.|..|+
T Consensus 185 ~~~~-d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 185 VVAV-DLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp EEEE-ETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred EEEE-ECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence 555 999887543222 1222221 346778888888999999886
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.46 E-value=2.1e-05 Score=67.32 Aligned_cols=124 Identities=18% Similarity=0.245 Sum_probs=84.8
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccC--cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC-ceE-EEEeCCcccEE
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ--LVNHVYFSPDGQWVASASFDKSIKLWNGTTG-KFV-AVFRGHVGPVY 406 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~--~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~-~~~-~~~~~h~~~v~ 406 (500)
.+..++.|.++++.++...... ..-|-. .+++++++||++++++.+....|-.|.+... +.+ .+..+.+.
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~---~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~--- 203 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNK---FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS--- 203 (344)
T ss_pred ceeeccCCcceeEEEEecCccc---ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC---
Confidence 3667788888888876543221 222332 3789999999999999999999999987653 222 21111100
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc-----ccccccCcccCEEEEEEcC
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~ 481 (500)
..++ ..+|+.....+|++..||++-|||++... ...+-+.|++.+..+.|++
T Consensus 204 ------------D~gF-----------~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl 260 (344)
T KOG4532|consen 204 ------------DHGF-----------YNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSL 260 (344)
T ss_pred ------------CCce-----------eeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecC
Confidence 0011 12678889999999999999999998632 2233456899999999998
Q ss_pred CC
Q 010816 482 DG 483 (500)
Q Consensus 482 dg 483 (500)
-|
T Consensus 261 ~g 262 (344)
T KOG4532|consen 261 YG 262 (344)
T ss_pred CC
Confidence 54
No 303
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.37 E-value=5.9e-07 Score=88.60 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=66.9
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-eEEEEe
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G-ELQCWD 178 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-~i~~wd 178 (500)
..++..|+..-+|++|+-+.+.|+.|+..|.|+++++.+|.......+|..+|+-+.=+.||..+++.+.- . -..+|+
T Consensus 1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhc
Confidence 35677889999999999999999999999999999999998888888999999999888888877664432 2 356776
Q ss_pred CC
Q 010816 179 PQ 180 (500)
Q Consensus 179 ~~ 180 (500)
..
T Consensus 1174 ~~ 1175 (1516)
T KOG1832|consen 1174 AS 1175 (1516)
T ss_pred cc
Confidence 54
No 304
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.36 E-value=1.4e-05 Score=69.69 Aligned_cols=217 Identities=18% Similarity=0.284 Sum_probs=121.7
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCe-----eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGK-----LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
.-|+++.|...| ++++|...|.|.+|.-.... ....++.|.....-+ .+. ++
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL--------------------kSl-ei- 84 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL--------------------KSL-EI- 84 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhh--------------------hhc-cH-
Confidence 457888887664 68888888999999754322 112233332110000 000 00
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC------------------CCCc-----------------------
Q 010816 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS------------------KQPK----------------------- 353 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~------------------~~~~----------------------- 353 (500)
..-+.............++....|.+|++|.+... ..+.
T Consensus 85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~ 164 (460)
T COG5170 85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC 164 (460)
T ss_pred HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence 00011111223334567888889999999986432 1000
Q ss_pred e-eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816 354 T-RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (500)
Q Consensus 354 ~-~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (500)
. ....|+.-+++++|+.|...+.++ .|=.|.+|++.-.. |.-.|..++.+ ++. +...-+
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D-------~sFnIVDiKP~---------nme---eLteVI 224 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIID-------GSFNIVDIKPH---------NME---ELTEVI 224 (460)
T ss_pred eeccccceeEeeeeeecCchheeeec-cceeeeeccccccC-------CceEEEeccCc---------cHH---HHHHHH
Confidence 0 013467778999999999888875 67789999986421 11111111110 000 000112
Q ss_pred eeeEEcCC-CCEEEEEECCCcEEEEECCCccc------cc--c--------ccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 433 SLYSWSAD-SRLLLSGSKDSTLKVWDIRTQKL------KQ--D--------LPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 433 ~~~~~s~~-~~~l~s~s~d~~v~iwd~~~~~~------~~--~--------~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
+...|+|. ...+.-.+..|+|++-|++...+ +. . +.+-.+.|..+.|+++|+++++-+- .+|
T Consensus 225 tSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltv 303 (460)
T COG5170 225 TSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTV 303 (460)
T ss_pred hhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceE
Confidence 22245665 34666677889999999984211 11 1 1122346788999999999888765 689
Q ss_pred EEecC
Q 010816 496 KLWMG 500 (500)
Q Consensus 496 ~iW~~ 500 (500)
+||+.
T Consensus 304 kiwDv 308 (460)
T COG5170 304 KIWDV 308 (460)
T ss_pred EEEec
Confidence 99974
No 305
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5e-05 Score=74.83 Aligned_cols=156 Identities=20% Similarity=0.247 Sum_probs=108.7
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
.+.+.|+++ .++.||-|..+|.|.+.+..... .....|... ..+|.+++|||.||+|.+-.+-+.+...
T Consensus 39 ~D~is~~av--~~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~- 107 (846)
T KOG2066|consen 39 NDAISCCAV--HDKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT- 107 (846)
T ss_pred hhHHHHHHh--hcceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce-
Confidence 345566666 35679999999999999875432 222234332 5579999999999999998776655321
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC---CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~ 264 (500)
...-..++.+++++|......+++|++||..| +.++.-+ ....+ .+....++|.++.|..+ .|+.++.+| |+
T Consensus 108 -~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~-lIAWand~G-v~ 182 (846)
T KOG2066|consen 108 -QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN-LIAWANDDG-VK 182 (846)
T ss_pred -eEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc-EEEEecCCC-cE
Confidence 11234678899999876666788999999999 7776532 11222 34555789999999854 666666655 89
Q ss_pred EEeCCCCeeEEEeec
Q 010816 265 VWETTQGKLIRELKG 279 (500)
Q Consensus 265 lwd~~~~~~~~~~~~ 279 (500)
+||+.+++.+..++.
T Consensus 183 vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPP 197 (846)
T ss_pred EEeccccceeeccCC
Confidence 999988877766543
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.8e-05 Score=72.51 Aligned_cols=265 Identities=17% Similarity=0.146 Sum_probs=152.3
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--CCcccccccCcccceEEEEeeeeecCCCCceEEEEeC-CCcEEEE
Q 010816 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGDARIW 225 (500)
Q Consensus 149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iw 225 (500)
|.+.|+.+.-+ -.+++++++.||.++.|.... |......+..|...+.++.- +.++..+.+.+. |..+|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~-----S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV-----SYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc-----cccceeEeeccCcccceeEE
Confidence 66666665443 457999999999999997532 22222223455555555442 234556778676 9999999
Q ss_pred ECCCCeEEEEecC--ccccEEEEEeCCC-C--eEEE-EeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeee
Q 010816 226 DVSLRKCVICLSG--HTLAVTCVKWGGD-G--VIYT-GSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 226 d~~~~~~~~~~~~--h~~~v~~~~~~~~-~--~l~t-~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
|+.....+..++- -...+.++ .++. . .|+. .-.++.+.++|-..+.+ ...-.-|..+|..+...+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa----- 155 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQA----- 155 (558)
T ss_pred EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecc-----
Confidence 9986554322211 11122222 1221 1 3333 34678899999765432 2233456777777665543
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-Cce-------------eeecccCcE
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-PKT-------------RMTGHQQLV 363 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-~~~-------------~~~~h~~~v 363 (500)
.+.+++....|.|..|.....-+ +.. .+.......
T Consensus 156 -------------------------------~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~p 204 (558)
T KOG0882|consen 156 -------------------------------GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEP 204 (558)
T ss_pred -------------------------------ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCc
Confidence 23466666778899997652110 100 011123446
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-----Cccc-----EEEEEeeeeeeecCCCCceeeee----cc
Q 010816 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-----HVGP-----VYQIRFELIYCFRYPSNFYCVVD----MS 429 (500)
Q Consensus 364 ~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-----h~~~-----v~~~~~~~~~~~~~~~~~~~~~~----~~ 429 (500)
.++.|+|+|..+++-+.|..|++++..+|+++..+.. |..+ +..+.+. .......+ .+
T Consensus 205 ts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Velg--------RRmaverelek~~~ 276 (558)
T KOG0882|consen 205 TSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELG--------RRMAVERELEKHGS 276 (558)
T ss_pred cceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehh--------hhhhHHhhHhhhcC
Confidence 7899999999999999999999999999987765532 1110 1111110 00000000 01
Q ss_pred ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
...+...|...|.+|+-|+.=| |++.++.++++.+
T Consensus 277 ~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 277 TVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred cccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 1122235677888998887665 7888887765543
No 307
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.32 E-value=1.5e-05 Score=79.44 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=121.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 010816 161 DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (500)
Q Consensus 161 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~ 240 (500)
++..++-|+.-..+..+|+++.+..+..-.+ ...+.=+.. .++.+.+|...|+|-+-|.++.+.+.++..|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR~-------Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMRY-------NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeecc-CCceEEEEe-------cCcEEEeecccceEEeecCCcCceeeeeeccc
Confidence 3456777777777888888776543321111 111333322 34578889999999999999999999999999
Q ss_pred ccEEEEEeCCCCeEEEEeC---------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816 241 LAVTCVKWGGDGVIYTGSQ---------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (500)
Q Consensus 241 ~~v~~~~~~~~~~l~t~~~---------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (500)
+.|++....+ +.|+++|. |.-|+|||+++-+.+.-+.-+..+ .-+.
T Consensus 218 ~siSDfDv~G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flr----------------------- 272 (1118)
T KOG1275|consen 218 GSISDFDVQG-NLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLR----------------------- 272 (1118)
T ss_pred cceeeeeccC-CeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhh-----------------------
Confidence 9999887664 46777763 556899999875544322211111 0000
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
+.+.-...++..|..|...+-|...-..+ ..........+..+++|++|+.+|.|..+|.|.+|.
T Consensus 273 ------------f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 273 ------------FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ------------hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 11122456888888888888874332222 222233345589999999999999999999999997
No 308
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.31 E-value=0.00058 Score=66.22 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=21.0
Q ss_pred EEECCCCCEEEEEeCC---------CcEEEEeCCCCce
Q 010816 366 VYFSPDGQWVASASFD---------KSIKLWNGTTGKF 394 (500)
Q Consensus 366 l~~sp~g~~lasgs~D---------g~i~lwd~~~~~~ 394 (500)
..|||||++|+..+.. ..|.+.|+.+++.
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe
Confidence 4899999998876654 2577777776653
No 309
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.27 E-value=0.003 Score=56.87 Aligned_cols=206 Identities=17% Similarity=0.205 Sum_probs=121.0
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE
Q 010816 155 CIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233 (500)
Q Consensus 155 ~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~ 233 (500)
++.|.+ ++.++++--..+.|..|+..++........+ ..++.+.. .+ ..++.+...+ +.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~----~~-g~l~v~~~~~-~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDR----PD-GRLYVADSGG-IAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEEC----TT-SEEEEEETTC-EEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEc----cC-CEEEEEEcCc-eEEEecCCCcEE
Confidence 567887 6666677667899999999887543222222 34444431 12 4566666544 455598887543
Q ss_pred EEec----C-ccccEEEEEeCCCCeEEEEeCC---------CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 234 ICLS----G-HTLAVTCVKWGGDGVIYTGSQD---------CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 234 ~~~~----~-h~~~v~~~~~~~~~~l~t~~~d---------g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
.... . .......+++.++|.|+.+... |.|..++.. ++... +...-..-+.++++++.
T Consensus 74 ~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg------ 145 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDG------ 145 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTS------
T ss_pred EEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcc------
Confidence 3322 2 3456788999999977665532 456666665 44322 22223334566666642
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC-C--ceee---ecccCcEEEEEECCCCC
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ-P--KTRM---TGHQQLVNHVYFSPDGQ 373 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~-~--~~~~---~~h~~~v~~l~~sp~g~ 373 (500)
...+++-+..+.|..++...... . ...+ .........+++..+|+
T Consensus 146 -----------------------------~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 146 -----------------------------KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp -----------------------------SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred -----------------------------hheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 11334666777788777653332 1 1111 11122477899999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 374 WVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 374 ~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
+.++.-..+.|.++|.+ |+.+..+.......+++
T Consensus 197 l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 197 LWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred EEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 88888888999999987 88877665443344444
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.24 E-value=0.00066 Score=60.99 Aligned_cols=122 Identities=22% Similarity=0.304 Sum_probs=78.5
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEe-----CCCcEEEEeCC-CCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGS-----GDTTVRLWDLN-TQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~-----~d~~i~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
..+.|| -.|||||++|.+.- ..|.|-|||.. +-+.+..+..|.-.-..+.+.|||+.|+.+ +|-|.
T Consensus 50 RHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVA--NGGI~ 121 (305)
T PF07433_consen 50 RHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVA--NGGIE 121 (305)
T ss_pred CEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEE--cCCCc
Confidence 456777 46999999999873 45789999998 555666777777777889999999888775 22221
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE--e--cCccccEEEEEeCCC
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC--L--SGHTLAVTCVKWGGD 251 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~--~--~~h~~~v~~~~~~~~ 251 (500)
- .+++|+.. +=...++-++...|..+++.+.. + .-|...|.-+++.++
T Consensus 122 T-hpd~GR~k---------------------------LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~ 173 (305)
T PF07433_consen 122 T-HPDSGRAK---------------------------LNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGD 173 (305)
T ss_pred c-CcccCcee---------------------------cChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCC
Confidence 0 11111110 11112334445555566665544 3 336778889999988
Q ss_pred CeEEEEeC
Q 010816 252 GVIYTGSQ 259 (500)
Q Consensus 252 ~~l~t~~~ 259 (500)
|.++.|.+
T Consensus 174 G~V~~a~Q 181 (305)
T PF07433_consen 174 GTVAFAMQ 181 (305)
T ss_pred CcEEEEEe
Confidence 87776654
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.20 E-value=0.0046 Score=61.66 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=152.6
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCC------CEE--EEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc-c
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN------WVL--CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL-S 190 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~------~v~--~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~ 190 (500)
+..+..++.++.+.-.|..+++.+........ .+. .+... ++..++.++.++.|..+|.++|+..-..- .
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 44566777889999999988887765542221 010 01111 22678888899999999999997653221 1
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEe---------CCCcEEEEECCCCeEEEEecCccc--------------------
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSAS---------KDGDARIWDVSLRKCVICLSGHTL-------------------- 241 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s---------~dg~v~iwd~~~~~~~~~~~~h~~-------------------- 241 (500)
.+...-..+.-.|... ..+++.++ .++.+...|..+++.+..+.....
T Consensus 140 ~~~~~~~~i~ssP~v~---~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 140 DQVPPGYTMTGAPTIV---KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred CCcCcceEecCCCEEE---CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 1100000111122111 13444443 367888999999887765532110
Q ss_pred cEE-EEEeC-CCCeEEEEeCCC------------------eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 242 AVT-CVKWG-GDGVIYTGSQDC------------------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 242 ~v~-~~~~~-~~~~l~t~~~dg------------------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
.+. +.... ..+.++.++.++ .|.-.|..+|+.....+........+.....-.+...
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~--- 293 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI--- 293 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec---
Confidence 010 12222 245777777665 6888888888877665422111110000000000000
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE---
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--- 378 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg--- 378 (500)
..+.+.....++.++.+|.+...|....+........ ...++.+| ..+..+
T Consensus 294 --------------------~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~vyv~~~~ 347 (488)
T cd00216 294 --------------------KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLVYLGAFH 347 (488)
T ss_pred --------------------cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceEEEcccc
Confidence 0001111235677888999998887765543322111 11233344 222222
Q ss_pred ---------------eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 379 ---------------SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 379 ---------------s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
..+|.+.-.|..+|+.+-......... ...+ ....... .....+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~-~~~~----------------g~~~~~~--~~~~~g~~ 408 (488)
T cd00216 348 IPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD-SWNI----------------GFPHWGG--SLATAGNL 408 (488)
T ss_pred ccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc-cccc----------------CCcccCc--ceEecCCe
Confidence 245778888888887654333210000 0000 0000000 00125678
Q ss_pred EEEEECCCcEEEEECCCcccccccc
Q 010816 444 LLSGSKDSTLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 444 l~s~s~d~~v~iwd~~~~~~~~~~~ 468 (500)
++.++.||.++.+|.++++.+-+.+
T Consensus 409 v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 409 VFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred EEEECCCCeEEEEECCCCceeeEEE
Confidence 8889999999999999998875543
No 312
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.19 E-value=3.6e-05 Score=73.61 Aligned_cols=75 Identities=31% Similarity=0.472 Sum_probs=63.3
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.....|.|++++|+.+.|+.|+.||+|.+||...+... +....-....++|+|+|..+++|+..|.+++||..-+
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 35678999999999999999999999999998766433 2234455788999999999999999999999998644
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.00026 Score=64.34 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=69.5
Q ss_pred ccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeC
Q 010816 102 ATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDP 179 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~ 179 (500)
..+.+|...|..++|+|..+ ++..++-+..|+|.|+++...+..+..| ..+.+++|.-|. .++..|...|.|.+||+
T Consensus 187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 45678999999999999988 6788899999999999998888777777 789999998765 56778888999999999
Q ss_pred CCCC
Q 010816 180 QTGK 183 (500)
Q Consensus 180 ~~~~ 183 (500)
+..+
T Consensus 266 R~~~ 269 (463)
T KOG1645|consen 266 RQPE 269 (463)
T ss_pred cCCC
Confidence 7654
No 314
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.16 E-value=7.2e-05 Score=74.70 Aligned_cols=179 Identities=17% Similarity=0.268 Sum_probs=120.6
Q ss_pred CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 252 GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
..++.|+....+..+|+++.+..+........+.-+. .++..
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--------------------------------------~Nnr~ 189 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--------------------------------------YNNRN 189 (1118)
T ss_pred cceeecchhhheeeeecccceeeeeeeccCCceEEEE--------------------------------------ecCcE
Confidence 3567777777888899998877665443222222221 12346
Q ss_pred EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeCCc
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---------Dg~i~lwd~~~~~~~~~~~~h~ 402 (500)
+.+|...|+|.+-|+.. -.....+..|++.|.. |+-.|++|++++. |.-|+|||++.-+.+.-+.-+.
T Consensus 190 lf~G~t~G~V~LrD~~s-~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~ 266 (1118)
T KOG1275|consen 190 LFCGDTRGTVFLRDPNS-FETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY 266 (1118)
T ss_pred EEeecccceEEeecCCc-Cceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc
Confidence 88999999999999764 3456778899998875 4557999999876 4568999988766554333333
Q ss_pred ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-CCEEEEEECCCcEEEEECCC---ccc-cccccCcccCEEEE
Q 010816 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD-SRLLLSGSKDSTLKVWDIRT---QKL-KQDLPGHADEVFAV 477 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~s~s~d~~v~iwd~~~---~~~-~~~~~~h~~~V~~l 477 (500)
++ .| +.|.|. ...++.++..|...+-|..+ ... +.-+..-...+.++
T Consensus 267 ~P----~f------------------------lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~f 318 (1118)
T KOG1275|consen 267 GP----QF------------------------LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAF 318 (1118)
T ss_pred Cc----hh------------------------hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeE
Confidence 33 00 123333 34688888889999988432 211 11111123458899
Q ss_pred EEcCCCCEEEEEeCCCcEEEec
Q 010816 478 DWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 478 ~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++|++|+.||.|..+|.|.+|.
T Consensus 319 DiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 319 DISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EecCCCceEEEecccCcEeeec
Confidence 9999999999999999999994
No 315
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=2.6e-05 Score=71.57 Aligned_cols=204 Identities=19% Similarity=0.286 Sum_probs=129.6
Q ss_pred ceEEEEeCCCcEEEEECCC---CeEEEEecCccccEEEEEeCCCCeE-EEEeC-CCeEEEEeCCCCeeEEEee-----cC
Q 010816 211 RRFVSASKDGDARIWDVSL---RKCVICLSGHTLAVTCVKWGGDGVI-YTGSQ-DCTIKVWETTQGKLIRELK-----GH 280 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~l-~t~~~-dg~i~lwd~~~~~~~~~~~-----~~ 280 (500)
..+++++.||.++.|--.. -..+..+..|...|.+++.+.++.+ .+.+. |..++++|+.+-..+.-++ +.
T Consensus 21 ~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~ 100 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGF 100 (558)
T ss_pred heEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCc
Confidence 5788999999999997543 1334556678888888888888865 45566 8999999987543321111 11
Q ss_pred CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCCeEEEEcCCCCC-CCceeeec
Q 010816 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDFTMFLWEPAVSK-QPKTRMTG 358 (500)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~~v~~wd~~~~~-~~~~~~~~ 358 (500)
..++.+ + +..-..++ +.-.++.+.++|..... +......-
T Consensus 101 a~wv~s----k----------------------------------Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkkl 142 (558)
T KOG0882|consen 101 AEWVTS----K----------------------------------GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKL 142 (558)
T ss_pred eEEecC----C----------------------------------CCeeeeEEeecccCCCcEEECCcCCcCccceeccc
Confidence 111100 0 00111233 33457889999976554 33344556
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
|..+|.++.++|.+..+.+....|.|.-|.... -+... ..+.|+ +..-...+.........+.+.|
T Consensus 143 H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr---------~~l~~~----~K~eTdLy~f~K~Kt~pts~Ef 209 (558)
T KOG0882|consen 143 HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPR---------TNLNFE----LKHETDLYGFPKAKTEPTSFEF 209 (558)
T ss_pred ccCceEEEEeeccccceeeccccceeEeecCCCcccCcc---------cccccc----ccccchhhcccccccCccceEE
Confidence 899999999999999999999999999998763 11000 000110 0001111222222233455578
Q ss_pred cCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
+|+|..+++-+.|..|++++.+++++++
T Consensus 210 sp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 210 SPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccccCcccccCcccEEEEEEeccchhhh
Confidence 9999999999999999999999877543
No 316
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.11 E-value=0.00052 Score=59.84 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=101.2
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-------CCCCEEEEEEcCC------CCEEEEEeCCCeEEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-------HKNWVLCIAWSAD------GKHLVSGSKAGELQC 176 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~s~~------~~~l~s~~~d~~i~~ 176 (500)
.-..++||||+.+||.+...|+|+++|+.... ++.+.. -...|..+.|.+. ...|+.-.++|.++-
T Consensus 45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 45578999999999999999999999997633 233221 2345777777542 235777788998888
Q ss_pred EeCCCCCccc-------ccccCcccceEEEEeeeeecCCCCceEEEEe-CC----------CcEEEEECCCCeE------
Q 010816 177 WDPQTGKPSG-------NPLSGHKKWITGISWEPVHLNAPCRRFVSAS-KD----------GDARIWDVSLRKC------ 232 (500)
Q Consensus 177 wd~~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~d----------g~v~iwd~~~~~~------ 232 (500)
|-+..+.... .....+...|.++.|+|.+ +.|+.|| .. .-+.-|.+-.+..
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-----~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~ 198 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-----RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVT 198 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-----CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcc
Confidence 8764332111 1112235678888888754 2333332 11 1234454321100
Q ss_pred --------------E---E---Ee---cCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816 233 --------------V---I---CL---SGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 233 --------------~---~---~~---~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
. . .+ ......|..+..+|||. |++...+|.|.+|++..-+..+....
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~ 269 (282)
T PF15492_consen 199 SSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ 269 (282)
T ss_pred ccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence 0 0 00 11245677888899985 77789999999999987666555443
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.0024 Score=66.46 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=56.4
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
.+.|.++.|..++.-++.+..+|.|.+-|.++..... ...-...|.+++||||++.++-.+.++++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 3689999999999999999999999999887654321 122356899999999999999998888877653
No 318
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.03 E-value=7.3e-06 Score=81.17 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=88.3
Q ss_pred eEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816 231 KCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (500)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (500)
+...+++.|+...+|++|+.+ +.|+.|+..|.|++|++.+|........|+..|+-+..+.++..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~-------------- 1157 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGST-------------- 1157 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcce--------------
Confidence 445667889999999999864 57899999999999999999988888888888877654433211
Q ss_pred HHHHHHHHHHhhhhhcCCCCcEEEEeeCC-CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 310 PEEMKKAALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
.+.+++.. .-..+|++.....+...+. .-.++.|+...+.-+.|.......+||
T Consensus 1158 ---------------------~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YD 1212 (1516)
T KOG1832|consen 1158 ---------------------QLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYD 1212 (1516)
T ss_pred ---------------------eeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEe
Confidence 12222222 2355787655444433332 345788887765556666666789999
Q ss_pred CCCCceEEE
Q 010816 389 GTTGKFVAV 397 (500)
Q Consensus 389 ~~~~~~~~~ 397 (500)
++++..+.+
T Consensus 1213 vqT~~~l~t 1221 (1516)
T KOG1832|consen 1213 VQTCSPLQT 1221 (1516)
T ss_pred cccCcHHHH
Confidence 999876554
No 319
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.0059 Score=55.14 Aligned_cols=212 Identities=14% Similarity=0.200 Sum_probs=119.3
Q ss_pred CCcEEEEECCCCeE---EEEecCccccEEEEEeCCCC-eEEEEeC---CCeEEEEeCCC--CeeEE--EeecCCceEEEE
Q 010816 219 DGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGDG-VIYTGSQ---DCTIKVWETTQ--GKLIR--ELKGHGHWVNSL 287 (500)
Q Consensus 219 dg~v~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~~-~l~t~~~---dg~i~lwd~~~--~~~~~--~~~~~~~~v~~~ 287 (500)
++-|.+|++.+..- ...+..+....+-++|++++ .|+++-. +|.|.-|.+.. |++.. .....+.+-.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 46788888764321 11223455667788899887 5666544 46666665543 44321 111111111233
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCC--ceeeecccCc--
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP--KTRMTGHQQL-- 362 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~--~~~~~~h~~~-- 362 (500)
+++++ +..++++. .-|.|.++.+...... ...+..|...
T Consensus 95 svd~~------------------------------------g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p 138 (346)
T COG2706 95 SVDED------------------------------------GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGP 138 (346)
T ss_pred EECCC------------------------------------CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCC
Confidence 33332 23344443 3566777765432211 1122233333
Q ss_pred --------EEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816 363 --------VNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (500)
Q Consensus 363 --------v~~l~~sp~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (500)
+....|.|++++|++.+.. -.|.+|++..|.+...-...- .-....-
T Consensus 139 ~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v------------------------~~G~GPR 194 (346)
T COG2706 139 HERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV------------------------KPGAGPR 194 (346)
T ss_pred CccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc------------------------CCCCCcc
Confidence 7788999999999987652 369999998876532111100 0011122
Q ss_pred eeEEcCCCCEEEEEE-CCCcEEEEECCC--ccc--cc---cccC---cccCEEEEEEcCCCCEEEEEe
Q 010816 434 LYSWSADSRLLLSGS-KDSTLKVWDIRT--QKL--KQ---DLPG---HADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s-~d~~v~iwd~~~--~~~--~~---~~~~---h~~~V~~l~~s~dg~~l~s~~ 490 (500)
-++|+|++++..... .+++|-+|.... ++. ++ .++. -.....++..++||++|..+.
T Consensus 195 Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 195 HIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred eEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEec
Confidence 347899999988765 589999998876 322 11 1221 123567889999999998763
No 320
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.00024 Score=70.16 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=98.1
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEeCCC-CCccccccc
Q 010816 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD-----GKHLVSGSKAGELQCWDPQT-GKPSGNPLS 190 (500)
Q Consensus 117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~-----~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~ 190 (500)
..+|.++|||+.||+|.|-.+-+........ ...++.+++++|+ .+.+++|+.-| +.++.-.= |......+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~ 157 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS 157 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeee
Confidence 3469999999999999999887766554433 5678999999998 67899999988 76664210 111111345
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE------EEEEeCCCCeEEEEeCCCeEE
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------TCVKWGGDGVIYTGSQDCTIK 264 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v------~~~~~~~~~~l~t~~~dg~i~ 264 (500)
.-.+.|.++.|.- ..++-++.+ -|++||..+++.+..+......+ ..+.|.++..|+.| +..+|+
T Consensus 158 ~~eG~I~~i~W~g-------~lIAWand~-Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~ 228 (846)
T KOG2066|consen 158 EGEGPIHSIKWRG-------NLIAWANDD-GVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVK 228 (846)
T ss_pred cCccceEEEEecC-------cEEEEecCC-CcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEE
Confidence 5678899999963 345555555 48999999888776554332222 24677777666654 555788
Q ss_pred EEeCC
Q 010816 265 VWETT 269 (500)
Q Consensus 265 lwd~~ 269 (500)
+..++
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88776
No 321
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.94 E-value=0.0015 Score=62.37 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=128.5
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR- 230 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~- 230 (500)
.|..++|.++...|+.|...|.|-+|.+...+.... .....-....+.+...+ ++.-.+-|+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~l~di~~r~ 68 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN---REQPPDLDYNFRRFSLN-----------NSPGKLTDISDRA 68 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE---------------------S--GG-----------GSS-SEEE-GGG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc---cCCCcccCccccccccc-----------CCCcceEEehhhC
Confidence 488999999988999999999999998754332110 00000011111111111 111222333221
Q ss_pred --------eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee--c------CCceEEEEEecCcce
Q 010816 231 --------KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK--G------HGHWVNSLALSTEYA 294 (500)
Q Consensus 231 --------~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~--~------~~~~v~~~~~~~~~~ 294 (500)
.....+....++|++++.+.-|.++.|..+|.+.|.|+|....+..-. . ....+.++.|...
T Consensus 69 ~~~~~~gf~P~~l~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm-- 146 (395)
T PF08596_consen 69 PPSLKEGFLPLTLLDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVM-- 146 (395)
T ss_dssp -TT-SEEEEEEEEE---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEE--
T ss_pred CcccccccCchhheeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEE--
Confidence 223334455789999999888999999999999999999888765422 1 1223444444310
Q ss_pred eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC--CCCcee----eecccCcEEEEE-
Q 010816 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS--KQPKTR----MTGHQQLVNHVY- 367 (500)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~--~~~~~~----~~~h~~~v~~l~- 367 (500)
... +..+ ..-.++.|...|.+.+|.+... ...... ...+.+.|..+.
T Consensus 147 --~~~----~D~y--------------------SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~ 200 (395)
T PF08596_consen 147 --TLG----GDGY--------------------SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIP 200 (395)
T ss_dssp --E-T----TSSS--------------------EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEE
T ss_pred --ecC----CCcc--------------------cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEE
Confidence 000 0000 0125788888999999876421 111111 113445554443
Q ss_pred ECCC-C-------------------CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816 368 FSPD-G-------------------QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (500)
Q Consensus 368 ~sp~-g-------------------~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 427 (500)
|+.+ | +.++....+..+|++...+.+...... ..+..+-..
T Consensus 201 i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~----------------- 261 (395)
T PF08596_consen 201 INADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSA----------------- 261 (395)
T ss_dssp EETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEE-----------------
T ss_pred EECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee--ccccccceE-----------------
Confidence 3221 1 123333446678888887766543222 111111100
Q ss_pred ccccceeeEE--cCCCCEEEEEECCCcEEEEECCCccccccccCc----ccCEEEEEEcCCCCEEEEEeCC
Q 010816 428 MSCCMSLYSW--SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 428 ~~~~~~~~~~--s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~dg~~l~s~~~D 492 (500)
..+.+ ...+..|++-..+|.|++|.+-..+.+....-. ...+....++++|+.++-.|..
T Consensus 262 -----~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gps 327 (395)
T PF08596_consen 262 -----SVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPS 327 (395)
T ss_dssp -----EEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSS
T ss_pred -----EEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCcc
Confidence 00000 124557888889999999999876665443321 1223345678888877666554
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00027 Score=70.19 Aligned_cols=70 Identities=21% Similarity=0.310 Sum_probs=61.0
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
+++++|+|..-.||.|-.-|.+.+|...+.+.-.....|..+|.-+.||++|..|+++..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4569999999999999999999999987655444445799999999999999999999999999999765
No 323
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0005 Score=62.50 Aligned_cols=129 Identities=10% Similarity=0.117 Sum_probs=86.3
Q ss_pred EEEEECCCCeEEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 222 ARIWDVSLRKCVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 222 v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
+++.+..+.+....+.+|...|..++|+|. |.+..++.+..|+|.|+++...+..+..+ ..+.++++.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDld------- 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLD------- 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccC-------
Confidence 444444444444456778889999999985 46888999999999999998777776655 55667666543
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc--cCcEEEEE------ECCC
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH--QQLVNHVY------FSPD 371 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h--~~~v~~l~------~sp~ 371 (500)
....+.+|-..|.|.++|++....+...+.+. ..+|..++ ..+.
T Consensus 247 ----------------------------e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~ 298 (463)
T KOG1645|consen 247 ----------------------------ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTS 298 (463)
T ss_pred ----------------------------CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccc
Confidence 13468889999999999998877665554442 22343333 2334
Q ss_pred CCEEEEEeCCCcEEEEe
Q 010816 372 GQWVASASFDKSIKLWN 388 (500)
Q Consensus 372 g~~lasgs~Dg~i~lwd 388 (500)
|.+|+..+.+ +..|+
T Consensus 299 gglLv~~lt~--l~f~e 313 (463)
T KOG1645|consen 299 GGLLVFALTV--LQFYE 313 (463)
T ss_pred cceEEeeehh--hhhhh
Confidence 5666655544 34444
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0036 Score=62.73 Aligned_cols=201 Identities=13% Similarity=0.174 Sum_probs=113.6
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCcccc-EEEEEeCCC-CeEEEEeCCC-----eEEEEeCCCC------eeEE
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-VTCVKWGGD-GVIYTGSQDC-----TIKVWETTQG------KLIR 275 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~-~~l~t~~~dg-----~i~lwd~~~~------~~~~ 275 (500)
....++.|+.+|.|.+.+-+ .+.+..+..+... |..+....+ ..|++.+.|+ .+++||+..- .++.
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~ 112 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLY 112 (933)
T ss_pred CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceee
Confidence 34578899999998887733 3333555555555 333322222 3677766554 5899998642 1221
Q ss_pred E--eec-----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC
Q 010816 276 E--LKG-----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAV 348 (500)
Q Consensus 276 ~--~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~ 348 (500)
. +.. ...++.+++++.+ -..++.|-.+|.|..+.-..
T Consensus 113 ~~ri~~~~np~~~~p~s~l~Vs~~------------------------------------l~~Iv~Gf~nG~V~~~~GDi 156 (933)
T KOG2114|consen 113 EHRIFTIKNPTNPSPASSLAVSED------------------------------------LKTIVCGFTNGLVICYKGDI 156 (933)
T ss_pred eeeeeccCCCCCCCcceEEEEEcc------------------------------------ccEEEEEecCcEEEEEcCcc
Confidence 1 111 1223334444332 23578888999998885321
Q ss_pred --CCCC-ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEEEeeeeeeecCCCCcee
Q 010816 349 --SKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQIRFELIYCFRYPSNFYC 424 (500)
Q Consensus 349 --~~~~-~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 424 (500)
.+.. .........+|+.+++..++..++-...-..|.+|.+.... ...++..|..++.+..
T Consensus 157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss--------------- 221 (933)
T KOG2114|consen 157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSS--------------- 221 (933)
T ss_pred hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeee---------------
Confidence 1111 11223345789999999988763333344578999887333 2445666777766653
Q ss_pred eeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc-CcccCE
Q 010816 425 VVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP-GHADEV 474 (500)
Q Consensus 425 ~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~h~~~V 474 (500)
+++....+++++.. .+.+|+......-..+. ||....
T Consensus 222 ------------~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 222 ------------FSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred ------------cCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence 34444435554443 58888877655444555 665433
No 325
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.00015 Score=69.64 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=76.0
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVL-CIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
.|.-+.|+|.-.++|++..+|.+.+..+. .+.+..+.-|...++ +++|.|||+.||.|-.||+|++-|.++|......
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSF 100 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceecc
Confidence 46778999999999999999999999887 556667766777777 9999999999999999999999999988655443
Q ss_pred ccCcccceEEEEeee
Q 010816 189 LSGHKKWITGISWEP 203 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~ 203 (500)
.......|..+.|.+
T Consensus 101 ~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 101 LFSVETDISKGIWDR 115 (665)
T ss_pred ccccccchheeeccc
Confidence 344556677777753
No 326
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.76 E-value=0.019 Score=57.28 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=67.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceE--EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT--GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h 239 (500)
+..++.++.++.+...|..+|+..-........... .+.-.+... .+..+++.++.++.|.-+|.++++.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 446777778899999999888754322111100000 000000000 01157788889999999999999887665432
Q ss_pred cc-----cEEE-EEeCCCCeEEEEe---------CCCeEEEEeCCCCeeEEEeec
Q 010816 240 TL-----AVTC-VKWGGDGVIYTGS---------QDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 240 ~~-----~v~~-~~~~~~~~l~t~~---------~dg~i~lwd~~~~~~~~~~~~ 279 (500)
.. .+.+ .... ++.++.++ .++.+.-+|..+|+.+.....
T Consensus 140 ~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 140 DQVPPGYTMTGAPTIV-KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCcCcceEecCCCEEE-CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 21 0111 1111 35565554 367888999999988776543
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0083 Score=60.27 Aligned_cols=223 Identities=13% Similarity=0.145 Sum_probs=126.5
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC-EEEEEEcCCCCEEEEEeCCC-----eEEEEeCCCCCccccc
Q 010816 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLVSGSKAG-----ELQCWDPQTGKPSGNP 188 (500)
Q Consensus 115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~ 188 (500)
.|++.+..+|.|+.+|.|.+.+-.- ..+..++.+... |..+-...+..+|++.+.|+ .+++||++..+...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~-- 106 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN-- 106 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc-eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC--
Confidence 3678899999999999998887421 222445556655 44443333446888877765 48999986432100
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEe
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWE 267 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd 267 (500)
. | .++ +..+++....+ -...++++++.+.+ ..++.|-.+|.|..+.
T Consensus 107 -----s--------P--------~c~-----~~~ri~~~~np-------~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~ 153 (933)
T KOG2114|consen 107 -----S--------P--------QCL-----YEHRIFTIKNP-------TNPSPASSLAVSEDLKTIVCGFTNGLVICYK 153 (933)
T ss_pred -----C--------c--------cee-----eeeeeeccCCC-------CCCCcceEEEEEccccEEEEEecCcEEEEEc
Confidence 0 0 000 11222221111 12345666666544 3577888899998874
Q ss_pred --CC--CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816 268 --TT--QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (500)
Q Consensus 268 --~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~ 343 (500)
.. .|.........+.+|+.+++..+... -.++ .....|.+
T Consensus 154 GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s----------------------------------~lFv--~Tt~~V~~ 197 (933)
T KOG2114|consen 154 GDILRDRGSRQDYSHRGKEPITGLALRSDGKS----------------------------------VLFV--ATTEQVML 197 (933)
T ss_pred CcchhccccceeeeccCCCCceeeEEecCCce----------------------------------eEEE--EecceeEE
Confidence 11 11112222334557777776543211 0122 22345777
Q ss_pred EcCCCCCCCcee-eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe-CCcccEEEEEee
Q 010816 344 WEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFE 411 (500)
Q Consensus 344 wd~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~ 411 (500)
|.+.... +... +..|...++|.++++....+++++. ..+.+|+....+....|. ||+.....+.+.
T Consensus 198 y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~~~g 265 (933)
T KOG2114|consen 198 YSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVFSFG 265 (933)
T ss_pred EEecCCC-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEEecC
Confidence 7765333 3333 6667788999999986654544433 369999988766666777 777665555443
No 328
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.75 E-value=0.00016 Score=69.32 Aligned_cols=74 Identities=22% Similarity=0.311 Sum_probs=58.6
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 358 ~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
..+..|.+.+++|+...|+.|+.||+|.+||...+....+ + .....+.++|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k----------------------------a~~~P~~iaW 307 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-K----------------------------AEFIPTLIAW 307 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-e----------------------------ecccceEEEE
Confidence 4566799999999999999999999999999876532211 0 0112344689
Q ss_pred cCCCCEEEEEECCCcEEEEECCC
Q 010816 438 SADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
+|+|.++++|+..|.+.+||+.-
T Consensus 308 Hp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 308 HPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred cCCCcEEEEEcCCceEEEEEeec
Confidence 99999999999999999999864
No 329
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.00026 Score=68.97 Aligned_cols=112 Identities=21% Similarity=0.275 Sum_probs=79.8
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA 439 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 439 (500)
...|.--+++..+.+++.|+.-|.+++|+-..++....-.+-...+. .+...|+
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~--------------------------~~~~vs~ 86 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGIT--------------------------CVRSVSS 86 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceE--------------------------EEEEecc
Confidence 34455556778899999999999999999877765332111111111 1124578
Q ss_pred CCCEEEEEECCCcEEEEECCCccc---cc--cc-cCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 440 DSRLLLSGSKDSTLKVWDIRTQKL---KQ--DL-PGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~~~~~~---~~--~~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+..++|.|+..|.|-++.+..... +. .+ ..|...|++++|++|+..+++|..-|+|.+
T Consensus 87 ~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~ 150 (726)
T KOG3621|consen 87 VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVL 150 (726)
T ss_pred hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEE
Confidence 888999999999999998765321 11 11 226789999999999999999999998864
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.65 E-value=0.0081 Score=62.71 Aligned_cols=108 Identities=18% Similarity=0.397 Sum_probs=72.2
Q ss_pred EEEEECCCCCEEEEEe----CC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 364 NHVYFSPDGQWVASAS----FD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 364 ~~l~~sp~g~~lasgs----~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
++++|--||.++|+.. .+ +.|++||.+ |.+-.+ ..++ ......++|-
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~----se~~-----------------------~~l~~~LsWk 250 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST----SEPV-----------------------EGLQHSLSWK 250 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc----cCcc-----------------------cccccceeec
Confidence 4688999999999842 23 899999976 432110 0111 0112345899
Q ss_pred CCCCEEEEEE---CCCcEEEEECCC---ccccccccCcccCEEEEEEcCCCCEEEE---EeCCCcEEEec
Q 010816 439 ADSRLLLSGS---KDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVAS---GGKDRVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s---~d~~v~iwd~~~---~~~~~~~~~h~~~V~~l~~s~dg~~l~s---~~~D~~v~iW~ 499 (500)
|.|.++|+-. +|+.|.+|.-.. ++..-.++....+|..++|+.++..||. ......|++|.
T Consensus 251 Psgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt 320 (1265)
T KOG1920|consen 251 PSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWT 320 (1265)
T ss_pred CCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEE
Confidence 9999999854 466899997543 3333334444445899999999999988 55566699995
No 331
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.61 E-value=0.00021 Score=42.42 Aligned_cols=37 Identities=38% Similarity=0.609 Sum_probs=32.6
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
+...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667889999999999999999999999999996
No 332
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.58 E-value=0.00014 Score=43.17 Aligned_cols=36 Identities=42% Similarity=0.718 Sum_probs=31.6
Q ss_pred cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 464 KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 ~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 344557888999999999999999999999999996
No 333
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.55 E-value=4.4e-05 Score=73.29 Aligned_cols=200 Identities=16% Similarity=0.275 Sum_probs=115.5
Q ss_pred CCCEEEEEEcCCC--CEEEEEeCCCeEEEEeCCCCCcc-cccccCcccceEEEEeeeeecCCCCceEEEE----eCCCcE
Q 010816 150 KNWVLCIAWSADG--KHLVSGSKAGELQCWDPQTGKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSA----SKDGDA 222 (500)
Q Consensus 150 ~~~v~~v~~s~~~--~~l~s~~~d~~i~~wd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~----s~dg~v 222 (500)
...+.|++++-+. ..++.|..+|.|.+-..+..... .....+|-...++++|++.+. ..++.| -.|..+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDt----n~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDT----NHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccH----HHHHhhhhhhcccCCc
Confidence 4567777776543 47788999999988876543222 233556777788899988632 345544 356789
Q ss_pred EEEECCCCeE----EEEecC-ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceee
Q 010816 223 RIWDVSLRKC----VICLSG-HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALR 296 (500)
Q Consensus 223 ~iwd~~~~~~----~~~~~~-h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 296 (500)
.|||+.++-. -..|.+ --....+++|..+. .+++|.....+.++|++.... +........+..+.+.|-
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk~vqG~tVdp~---- 206 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTKYVQGITVDPF---- 206 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhhhhcccceecCC----
Confidence 9999976511 111222 22234466676544 466777788999999874311 000011112222222220
Q ss_pred eccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc-CCCCCCCceeeecc----cCcEEEEEECCC
Q 010816 297 TGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE-PAVSKQPKTRMTGH----QQLVNHVYFSPD 371 (500)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd-~~~~~~~~~~~~~h----~~~v~~l~~sp~ 371 (500)
.+++++ ...|+.+-+|| .+.-+.+...+... .+.+..++|+|.
T Consensus 207 -------------------------------~~nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 207 -------------------------------SPNYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred -------------------------------CCCcee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 123444 44599999999 44333333222222 235889999994
Q ss_pred -CCEEEEEeC-CCcEEEEeCC
Q 010816 372 -GQWVASASF-DKSIKLWNGT 390 (500)
Q Consensus 372 -g~~lasgs~-Dg~i~lwd~~ 390 (500)
..++++.+. .++|+++|+.
T Consensus 255 rtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 255 RTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CcchhhhhccCcceEEEeccc
Confidence 345555555 4789999865
No 334
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.51 E-value=0.07 Score=48.31 Aligned_cols=61 Identities=25% Similarity=0.380 Sum_probs=43.1
Q ss_pred ccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 430 CCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
..+..+++++++.++++.| .-+.+.+||..+++++....- ..+..|+-.+++ +++|.|.-.
T Consensus 217 ~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~G~ 278 (305)
T PF07433_consen 217 GYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQGQ 278 (305)
T ss_pred CceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCCcc
Confidence 3355567899998887766 567899999999998776542 346677777666 666665543
No 335
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.48 E-value=0.0042 Score=63.71 Aligned_cols=142 Identities=20% Similarity=0.289 Sum_probs=92.0
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
......|+-.|+..|+.+...+.+... |..++-...++ ...++..+.|
T Consensus 500 ~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~a-------------------------------qlt~e~tflG 548 (794)
T PF08553_consen 500 PNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFA-------------------------------QLTNEQTFLG 548 (794)
T ss_pred CCCCCceEEEecCCCcEEEEeecCCCcceeEeccccccc-------------------------------ccCCCceEEE
Confidence 345678888999999999988766543 44443322110 0112346778
Q ss_pred eCCCeEEEEcCCCCCCCceeee----cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~ 411 (500)
-.++.++.||++.......... .......|++-+.+| +||.|+.+|.||+||-...+....+.+-..||..|
T Consensus 549 ls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~i--- 624 (794)
T PF08553_consen 549 LSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGI--- 624 (794)
T ss_pred ECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEE---
Confidence 8899999999987542211111 223457788777666 69999999999999954333334455666777666
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
..+.||+++++.+.. .+-|+++
T Consensus 625 ------------------------Dvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 625 ------------------------DVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred ------------------------EecCCCcEEEEeecc-eEEEEEE
Confidence 347899998876654 4555554
No 336
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.41 E-value=4.1e-05 Score=73.49 Aligned_cols=160 Identities=22% Similarity=0.402 Sum_probs=101.4
Q ss_pred cccCCcccEEEEEEcC-CCCeEEEEe----CCCcEEEEeCCCC--cee--EEecC-CCCCEEEEEEcCCCCEEEEEeCCC
Q 010816 103 TIAGHTEAVLSVAFSP-DGRQLASGS----GDTTVRLWDLNTQ--TPM--FKCTG-HKNWVLCIAWSADGKHLVSGSKAG 172 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp-~~~~lat~~----~d~~i~iwd~~~~--~~~--~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~ 172 (500)
+..+|..+.++++|++ |.+.||.|- .|..+.|||+.+. .|. ..+.+ -.....+++|-.+.++|++|....
T Consensus 97 ~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr 176 (783)
T KOG1008|consen 97 VTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSR 176 (783)
T ss_pred ecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccc
Confidence 3467888999999998 456777772 4678999999876 222 11222 334566888988888999999889
Q ss_pred eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE-CCCCeEEEEecCc-----cccEEEE
Q 010816 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD-VSLRKCVICLSGH-----TLAVTCV 246 (500)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd-~~~~~~~~~~~~h-----~~~v~~~ 246 (500)
.++++|++..-.... .-.++.+.++...|... .+++ ...||.|.+|| .+.-+......-| ...+..+
T Consensus 177 ~~~ifdlRqs~~~~~--svnTk~vqG~tVdp~~~----nY~c-s~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVS--SVNTKYVQGITVDPFSP----NYFC-SNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhhhhhhh--hhhhhhcccceecCCCC----Ccee-ccccCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 999999863211111 11223445555555322 2444 45599999999 3332211111111 2347888
Q ss_pred EeCC--CCeEEEEeCC-CeEEEEeCC
Q 010816 247 KWGG--DGVIYTGSQD-CTIKVWETT 269 (500)
Q Consensus 247 ~~~~--~~~l~t~~~d-g~i~lwd~~ 269 (500)
+|.| .|.+++...| ++|+++|+.
T Consensus 250 aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 250 AYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred EeccCCcchhhhhccCcceEEEeccc
Confidence 9987 4677777765 689999874
No 337
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.38 E-value=0.14 Score=48.81 Aligned_cols=67 Identities=25% Similarity=0.257 Sum_probs=46.2
Q ss_pred cCCCCeEEEE---------eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816 117 SPDGRQLASG---------SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 117 sp~~~~lat~---------~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 185 (500)
|||+++++.. +..+.+.|||+++++... +......+....|+|+|+.++-.. ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 5777776653 234578899999865432 222256788899999999988775 688999988776443
No 338
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.26 E-value=0.25 Score=49.33 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=76.9
Q ss_pred CCeEEEEcCCC----CCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816 338 DFTMFLWEPAV----SKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412 (500)
Q Consensus 338 d~~v~~wd~~~----~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 412 (500)
++.|.+.|... .... ...-.-......++++|||++++++ ..+.+|.|.|+.+.+... .+.-.+-..+.-
T Consensus 295 gn~V~VID~~t~~~~~~~v-~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~--~~~~~~~~~vva-- 369 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSAL-TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF--DGKIKPRDAVVA-- 369 (635)
T ss_pred CCEEEEEECCccccCCcce-EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh--hccCCccceEEE--
Confidence 56788999765 1111 1222223557789999999987655 458999999998754311 000000000000
Q ss_pred eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC----------ccccccccCccc-----CEEEE
Q 010816 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHAD-----EVFAV 477 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~-----~V~~l 477 (500)
...........+|.++|....|-..|..|-.||+.+ ...+.++.-|.. ..-+=
T Consensus 370 ------------evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~ 437 (635)
T PRK02888 370 ------------EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGE 437 (635)
T ss_pred ------------eeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCC
Confidence 000001111236788898888889999999999876 233343433322 11111
Q ss_pred EEcCCCCEEEEEe
Q 010816 478 DWSPDGEKVASGG 490 (500)
Q Consensus 478 ~~s~dg~~l~s~~ 490 (500)
.-.|||+||++..
T Consensus 438 t~~~dgk~l~~~n 450 (635)
T PRK02888 438 TKEADGKWLVSLN 450 (635)
T ss_pred cCCCCCCEEEEcc
Confidence 2367888888764
No 339
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.25 E-value=0.27 Score=49.46 Aligned_cols=111 Identities=18% Similarity=0.172 Sum_probs=64.7
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEE---E-------EEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVL---C-------IAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~---~-------v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
+..|+.++.++.|.=.|..+++.+....... ..+. + +++ .+..++.++.|+.+...|.++|+..-..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 4567777778888888998888776543211 1111 1 122 2356778889999999999999865322
Q ss_pred cc-CcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816 189 LS-GHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICL 236 (500)
Q Consensus 189 ~~-~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~ 236 (500)
-. .+... ..+.-.|.-. ..+++.+. .+|.|.-+|.++++.+-.+
T Consensus 147 ~~~~~~~~-~~~tssP~v~---~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 147 KNGDYKAG-YTITAAPLVV---KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred cccccccc-ccccCCcEEE---CCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 11 11100 0111122211 12445443 3688999999998876553
No 340
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.09 E-value=0.29 Score=46.96 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-------------------------------------------eeEEe
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-------------------------------------------PMFKC 146 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-------------------------------------------~~~~~ 146 (500)
.|+.+.|.++..-||.|-..|.|.||.+...+ |+..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999999999999999999998652110 11122
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
....++|++++.| |=.++|.|..+|.+.|.|++...
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe
Confidence 2346789999997 55599999999999999996544
No 341
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.09 E-value=0.3 Score=46.90 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=40.9
Q ss_pred eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816 356 MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
+......+.+++.+|++++.|+...=|+|.++|+.++..++.+||-...
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA 351 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA 351 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc
Confidence 3344556889999999999999877899999999999999999986543
No 342
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.04 E-value=0.12 Score=50.24 Aligned_cols=112 Identities=13% Similarity=0.210 Sum_probs=53.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE-E
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW-D 226 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw-d 226 (500)
........++++|+|+.++. +.||.-.++.....+. ...+.-....|.+ ..+|++-...++|+|+ +
T Consensus 30 ~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~------k~~G~g~~~vw~~------~n~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRN------KAFGSGLSFVWSS------RNRYAVLESSSTIKIYKN 96 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEE------EEEEE-SEEEE-T------SSEEEEE-TTS-EEEEET
T ss_pred CCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCcc------cccCceeEEEEec------CccEEEEECCCeEEEEEc
Confidence 34556789999999998888 4577777776332211 1122233455654 2468877778888886 3
Q ss_pred CCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe
Q 010816 227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL 277 (500)
Q Consensus 227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~ 277 (500)
..... ...+.- ...+..+.. |.++....++.|.+||+.+++.++.+
T Consensus 97 ~~~~~-~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~~~i~~i 142 (443)
T PF04053_consen 97 FKNEV-VKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETGKLIRRI 142 (443)
T ss_dssp TEE-T-T------SS-EEEEE----SSSEEEEETTEEEEE-TTT--EEEEE
T ss_pred Ccccc-ceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHcceeeEE
Confidence 32111 111111 112333322 44444444457888888887766543
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.0015 Score=65.24 Aligned_cols=105 Identities=20% Similarity=0.346 Sum_probs=79.0
Q ss_pred EEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816 366 VYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441 (500)
Q Consensus 366 l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 441 (500)
.+|+|...++|+++. .|+|.||- ++|+.- ..+. .+-..+.+.|+|..
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq----------r~Vt------------------~P~hatSLCWHpe~ 71 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ----------RDVT------------------YPVHATSLCWHPEE 71 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCC----------cccc------------------cceehhhhccChHH
Confidence 478999999988764 35666662 333321 1110 01112335789998
Q ss_pred CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 442 RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 442 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
-.|+.|=.-|.+.+|...+.+.......|...|..+.||++|..|.|+..-|.|.+|.
T Consensus 72 ~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 72 FVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred HHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 8999998899999999988777666677999999999999999999999999999995
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0017 Score=54.87 Aligned_cols=104 Identities=20% Similarity=0.178 Sum_probs=67.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d 450 (500)
-+..+++|+.||.|++|.... +..|...+ ...++.+.+ .+ .--.++.+..+++.|
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~------~g~~~d~~-~s~~e~i~~---------------~I---p~~~~~~~~c~~~~d 123 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNL------EGAHSDRV-CSGEESIDL---------------GI---PNGRDSSLGCVGAQD 123 (238)
T ss_pred cCceEEeecccceEEEecCCc------cchHHHhh-hccccccee---------------cc---ccccccceeEEeccC
Confidence 356799999999999998752 11111111 111111111 00 112244578889999
Q ss_pred CcEEEEECCCccccccccCcc-cCEEEEEEcCCCCEEEEE--eCCCcEEEec
Q 010816 451 STLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASG--GKDRVLKLWM 499 (500)
Q Consensus 451 ~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~s~--~~D~~v~iW~ 499 (500)
|.||.|+++..+.+.....|. ..+..+..+..++.|+++ |.|.+++.|.
T Consensus 124 g~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 124 GRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred CceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcc
Confidence 999999999988887777777 555555556666788888 8888888886
No 345
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.95 E-value=0.12 Score=51.45 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=78.3
Q ss_pred EEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816 115 AFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (500)
Q Consensus 115 ~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 193 (500)
=++|||+.+... -..+.+.+.|.++.+...+..--. ...-++++++|+++++.+++. +.+......-.+-.
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNs-------E~G~tl~em~a~e~ 270 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNS-------EEGVTLAEMMAAER 270 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCc-------ccCcceeeeccccC
Confidence 356788766433 345678888888766555443222 235678899999998887532 11211111001111
Q ss_pred cceEEEEeee-eecCCCCceEEEEeCCCcEEEEECCC-----CeEEEEecCccccEEEEEeCCCCe--EEEEeCCCeEEE
Q 010816 194 KWITGISWEP-VHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLAVTCVKWGGDGV--IYTGSQDCTIKV 265 (500)
Q Consensus 194 ~~v~~~~~~~-~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~--l~t~~~dg~i~l 265 (500)
..+..+.|.. .....+++.... .++.|.+.|.++ .+.+..+. -......+.++|||. ++++..+.++.+
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSV 347 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTV 347 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEE
Confidence 1122222110 011122322222 356799999887 33333332 223345678899984 556667899999
Q ss_pred EeCCCC
Q 010816 266 WETTQG 271 (500)
Q Consensus 266 wd~~~~ 271 (500)
.|+.+.
T Consensus 348 IDv~k~ 353 (635)
T PRK02888 348 IDVRKL 353 (635)
T ss_pred EEChhh
Confidence 998653
No 346
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.95 E-value=0.23 Score=43.24 Aligned_cols=135 Identities=17% Similarity=0.112 Sum_probs=77.5
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEE
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS 200 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~ 200 (500)
.+++.|+..+.++--|..++....... -...+.+-+.- -|+.++.|.+.|.+.+-+.++|...........-.+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~--- 98 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR--- 98 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc---
Confidence 456667777777777776666544321 12223222211 3678999999999999999998643321111111111
Q ss_pred eeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCCCeE
Q 010816 201 WEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQDCTI 263 (500)
Q Consensus 201 ~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~dg~i 263 (500)
+. ...+...+..|+.|++....|.++..|+...+-....-.+-...+ ++.|+.+...|.+
T Consensus 99 --a~-~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~v 159 (354)
T KOG4649|consen 99 --AQ-CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAV 159 (354)
T ss_pred --eE-EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceE
Confidence 11 112456788899999999999999998876542211111111222 4556666555544
No 347
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.95 E-value=0.31 Score=44.83 Aligned_cols=273 Identities=17% Similarity=0.162 Sum_probs=126.3
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCccccc-cc-CcccceE
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNP-LS-GHKKWIT 197 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~-~~-~~~~~v~ 197 (500)
+.+.|+|.++++.+-.+.. +..-.+..+||++.+++++ ..-.|.+||..+-...... +. .|...
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~-- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ-- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B----
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe--
Confidence 3688888888776554432 2233466789999888643 3446999999875432211 11 11110
Q ss_pred EEEee-eeecCCCCceEEE--EeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCee
Q 010816 198 GISWE-PVHLNAPCRRFVS--ASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKL 273 (500)
Q Consensus 198 ~~~~~-~~~~~~~~~~~~s--~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~ 273 (500)
.+... -...+.+++.++. .+-..+|-|-|+..++.+.++.- ..+..+--.++..+.+-+.||++....+. .|+.
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 00000 0001112222221 12223444455555555443321 11222222234457888999998888876 4554
Q ss_pred EEEeecCCceEEEEEecCcc-ee-eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816 274 IRELKGHGHWVNSLALSTEY-AL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (500)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~ 351 (500)
.+... . .|.++. .+ ....+ ......++--+..|.|+--|+.....
T Consensus 171 ~~~~t-------~-~F~~~~dp~f~~~~~-------------------------~~~~~~~~F~Sy~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 171 AQKST-------K-VFDPDDDPLFEHPAY-------------------------SRDGGRLYFVSYEGNVYSADLSGDSA 217 (342)
T ss_dssp EEEEE-------E-ESSTTTS-B-S--EE-------------------------ETTTTEEEEEBTTSEEEEEEETTSSE
T ss_pred eEeec-------c-ccCCCCcccccccce-------------------------ECCCCeEEEEecCCEEEEEeccCCcc
Confidence 32110 1 122110 00 00000 01123444456677776655433221
Q ss_pred Cc-eee---e---cccCcE----EEEEECCCCCEEEEE---eCCC-------cEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 352 PK-TRM---T---GHQQLV----NHVYFSPDGQWVASA---SFDK-------SIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 352 ~~-~~~---~---~h~~~v----~~l~~sp~g~~lasg---s~Dg-------~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
.. ... . .-..+- .-+++++..+.|..- +.++ .|.++|+.+++.+..+.. ..++.++
T Consensus 218 ~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si-- 294 (342)
T PF06433_consen 218 KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSI-- 294 (342)
T ss_dssp EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEE--
T ss_pred cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceE--
Confidence 00 000 0 001111 126677654433332 1222 488889999888776652 1122223
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccccC
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPG 469 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~~ 469 (500)
+.+.+.+ +|++.+ .++.+.+||..+++++.++.+
T Consensus 295 -------------------------~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 295 -------------------------AVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp -------------------------EEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred -------------------------EEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3355554 554444 578999999999998877654
No 348
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.0047 Score=52.31 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=68.3
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE-EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-cEE
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVY 406 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~-l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-~v~ 406 (500)
...++.|+.+|.|.+|..............-...|.+ +.--.++.+..+++.||.||.|+...++.+.....|+. ++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 3568999999999999865322211111111222322 22334567889999999999999998888776666652 221
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE--ECCCcEEEEECCC
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG--SKDSTLKVWDIRT 460 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~--s~d~~v~iwd~~~ 460 (500)
.. ..+..+++++.+ |.|..++.|++..
T Consensus 150 ~~---------------------------ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 EL---------------------------IVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ee---------------------------EEecCCceEEeeccccchhhhhcchhh
Confidence 11 224567778887 8888888888764
No 349
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.87 E-value=0.088 Score=51.04 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=54.7
Q ss_pred EEEEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCc--EEEEeCCCCceEEEEeCCcccE
Q 010816 331 RLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKS--IKLWNGTTGKFVAVFRGHVGPV 405 (500)
Q Consensus 331 ~~~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~--i~lwd~~~~~~~~~~~~h~~~v 405 (500)
.+++...|+. |++.|+.... ..++......-..=.|+|||+.|+-.+. .|. |.+++.+.+.... +.-..+.
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~- 327 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGG- 327 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCC-
Confidence 4556666665 4555654433 2223333333335579999998886654 443 5555655543311 1100000
Q ss_pred EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-Cc--EEEEECCCcc
Q 010816 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-ST--LKVWDIRTQK 462 (500)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~--v~iwd~~~~~ 462 (500)
. ....|||||++++..+.+ |. |.+.|+.++.
T Consensus 328 ------------------------~--~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 328 ------------------------N--SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred ------------------------C--cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 0 012579999999977743 43 6666665554
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.84 E-value=0.53 Score=45.92 Aligned_cols=138 Identities=14% Similarity=0.136 Sum_probs=74.6
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE-eCCCCCccccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW-DPQTGKPSGNP 188 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w-d~~~~~~~~~~ 188 (500)
....+.++|+|+.++. ++||...|+.....+.... +.-....|.+.+ .+|+-...++|.++ +.+........
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT----
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEc
Confidence 3567899999999888 6788888888443333221 223457788844 57776668889996 33221100001
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~ 268 (500)
+. ..+..+- .+..+... .++.|.+||..+++.+..+.-. +|..+.|++++.+++-..+..+.+++.
T Consensus 107 ~~---~~~~~If--------~G~LL~~~-~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~ 172 (443)
T PF04053_consen 107 LP---FSVEKIF--------GGNLLGVK-SSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKY 172 (443)
T ss_dssp -S---S-EEEEE---------SSSEEEE-ETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE
T ss_pred CC---cccceEE--------cCcEEEEE-CCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEe
Confidence 11 1122221 12344444 4448999999999998877643 488999999986665555667777764
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.84 E-value=0.47 Score=45.22 Aligned_cols=147 Identities=19% Similarity=0.247 Sum_probs=76.6
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecC-------C---------CCCEEEEEEcCCCCEEEEEeC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTG-------H---------KNWVLCIAWSADGKHLVSGSK 170 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~-------h---------~~~v~~v~~s~~~~~l~s~~~ 170 (500)
...+....|+|+|+.+|-.. ++.|.+++..++.... +..| - -+.-..+-|||||++||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 45677899999999999875 5789999887664331 1112 0 012256889999999988765
Q ss_pred C-CeEEEEeCC---CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--cEEEEECCCCeEEE-E-e---cCc
Q 010816 171 A-GELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVSLRKCVI-C-L---SGH 239 (500)
Q Consensus 171 d-~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg--~v~iwd~~~~~~~~-~-~---~~h 239 (500)
| ..|+.+.+. .... ..-.+..+.+ |. .|..+- .+.|+|+.+++... . . ..-
T Consensus 121 d~~~v~~~~~~~~~~~~~-------~yp~~~~~~Y-Pk----------~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~ 182 (353)
T PF00930_consen 121 DEREVPEYPLPDYSPPDS-------QYPEVESIRY-PK----------AGDPNPRVSLFVVDLASGKTTELDPPNSLNPQ 182 (353)
T ss_dssp E-TTS-EEEEEEESSSTE-------SS-EEEEEE---B----------TTS---EEEEEEEESSSTCCCEE---HHHHTS
T ss_pred CCcCCceEEeeccCCccc-------cCCccccccc-CC----------CCCcCCceEEEEEECCCCcEEEeeeccccCCC
Confidence 4 334443321 1100 0001222222 10 112222 35567887776422 1 1 233
Q ss_pred cccEEEEEeCCCCe-EEE--EeCCC---eEEEEeCCCCee
Q 010816 240 TLAVTCVKWGGDGV-IYT--GSQDC---TIKVWETTQGKL 273 (500)
Q Consensus 240 ~~~v~~~~~~~~~~-l~t--~~~dg---~i~lwd~~~~~~ 273 (500)
...+..+.|.+++. ++. ..++. .+.++|..++..
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~ 222 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET 222 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce
Confidence 45678889988775 443 33332 355667666543
No 352
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.78 E-value=0.48 Score=44.51 Aligned_cols=94 Identities=17% Similarity=0.128 Sum_probs=37.4
Q ss_pred eCCCCceeEEecCCCC-----CEEEEEEcCCCCEEEEE-eCCCe--EEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816 136 DLNTQTPMFKCTGHKN-----WVLCIAWSADGKHLVSG-SKAGE--LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (500)
Q Consensus 136 d~~~~~~~~~~~~h~~-----~v~~v~~s~~~~~l~s~-~~d~~--i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (500)
|..|+..+..++.+.. ..+.=+|.+||++|+-+ ..||. +.+-|+.+++..+..-... ....+..++|
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g-~~~~g~~~s~---- 90 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG-DNTFGGFLSP---- 90 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-T----
T ss_pred CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC-CCccceEEec----
Confidence 4556666655543222 22223577889766554 44654 5556888776433211111 1111222222
Q ss_pred CCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816 208 APCRRFVSASKDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 208 ~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 235 (500)
..+.++-......++-.|+.+.+....
T Consensus 91 -~~~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 91 -DDRALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp -TSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred -CCCeEEEEECCCeEEEEECCcCcEEEE
Confidence 223443344456777788887765333
No 353
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.01 Score=57.64 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=67.7
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
..+..+.|+|.-.++|.+..+|.|-+..+. .+-+.++.-|..++. +.++|.||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~--------------------------~sL~W~~D 73 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVT--------------------------ASLCWRPD 73 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccc--------------------------eeeeecCC
Confidence 346778999999999999999988877665 333333333333332 23489999
Q ss_pred CCEEEEEECCCcEEEEECCCccccccc-cCcccCEEEEEEcC
Q 010816 441 SRLLLSGSKDSTLKVWDIRTQKLKQDL-PGHADEVFAVDWSP 481 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s~ 481 (500)
|++||.|-.||+|++.|++++..+... ..-...|...-|++
T Consensus 74 GkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 74 GKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 999999999999999999998766542 11234677777764
No 354
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.72 E-value=0.35 Score=42.13 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=69.4
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc-cc
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH-TL 241 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h-~~ 241 (500)
.+++.|+-.+.+..-|..+|+......-+-.-.-..+. -++.++.|...|.+++.+.+++.....+..- ..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v--------vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV--------VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE--------ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 46677777888888888888654332222211111111 1245788999999999999998655544321 11
Q ss_pred cEEE-EEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816 242 AVTC-VKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281 (500)
Q Consensus 242 ~v~~-~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~ 281 (500)
.+.+ ++++ .+.|+.|+.|++.+.-|.++...+...+-.+
T Consensus 96 k~~a~~d~~-~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 96 KVRAQCDFD-GGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred ccceEEcCC-CceEEEecCCCcEEEecccccceEEecccCC
Confidence 2222 2232 3678999999999999998877776655433
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.71 E-value=0.039 Score=52.72 Aligned_cols=53 Identities=26% Similarity=0.448 Sum_probs=43.1
Q ss_pred CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
...++++||.+|.||+||-...+...-++|-..+|..++.+.||++|+.....
T Consensus 440 ~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t 492 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT 492 (644)
T ss_pred CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence 34589999999999999975555556688989999999999999998765543
No 356
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.69 E-value=0.68 Score=45.00 Aligned_cols=40 Identities=13% Similarity=0.207 Sum_probs=31.8
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
...+..+++||+|+++|.-..+|.+.+.+..-.+.+..+.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 3579999999999999999999999998765555544443
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.68 E-value=0.15 Score=38.39 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=57.8
Q ss_pred EEEEEECC---CC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 363 VNHVYFSP---DG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 363 v~~l~~sp---~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
|+++++.. || +-|++||.|..||+|+-. +.+..+..+. .+..+ ...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~-~v~~L---------------------------~~~ 51 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETD-KVTSL---------------------------CSL 51 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEeccc-ceEEE---------------------------EEc
Confidence 45565543 43 689999999999999754 3333333222 22222 112
Q ss_pred CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc---CCC-CEEEEEeCCCcEE
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS---PDG-EKVASGGKDRVLK 496 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s---~dg-~~l~s~~~D~~v~ 496 (500)
.+..++.|-.+|+|-+|+-......-+ + +..+.++.+. .|| .-|++|=.+|.|-
T Consensus 52 -~~~~F~Y~l~NGTVGvY~~~~RlWRiK-S--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 52 -GGGRFAYALANGTVGVYDRSQRLWRIK-S--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred -CCCEEEEEecCCEEEEEeCcceeeeec-c--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 235688899999999997644332211 1 2235555432 233 2578887778764
No 358
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.65 E-value=0.047 Score=56.32 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=77.3
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCc-EEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCc-eEEEEeCCcccEEEE
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQL-VNHVYFSP-----DGQWVASASFDKSIKLWNGTTGK-FVAVFRGHVGPVYQI 408 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~-v~~l~~sp-----~g~~lasgs~Dg~i~lwd~~~~~-~~~~~~~h~~~v~~~ 408 (500)
.....++-.|+..++ .......|.+. |..++-.. +..--..|-.++.+..||.+-.. .+..-..|
T Consensus 501 ~~~~~ly~mDLe~GK-VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k------- 572 (794)
T PF08553_consen 501 NNPNKLYKMDLERGK-VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK------- 572 (794)
T ss_pred CCCCceEEEecCCCc-EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc-------
Confidence 345667777765443 23333334332 44433211 12234566678889999987532 11100111
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 488 (500)
.+....++.|. +.+ ...+||.|+.+|.||+||--..+....++|-.++|.+|+.+.||+||+.
T Consensus 573 ------~Y~~~~~Fs~~----------aTt-~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwila 635 (794)
T PF08553_consen 573 ------QYSSKNNFSCF----------ATT-EDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILA 635 (794)
T ss_pred ------ccccCCCceEE----------Eec-CCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEE
Confidence 11111222221 223 3458999999999999996544445567888899999999999999877
Q ss_pred EeCCC
Q 010816 489 GGKDR 493 (500)
Q Consensus 489 ~~~D~ 493 (500)
.....
T Consensus 636 Tc~ty 640 (794)
T PF08553_consen 636 TCKTY 640 (794)
T ss_pred eecce
Confidence 66544
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.56 E-value=0.01 Score=61.28 Aligned_cols=80 Identities=23% Similarity=0.314 Sum_probs=61.6
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
.++.|+..|.+...|....-.+...-..-+.+|++++|+.+|..++.|-.+|.|.+||...++.+..+..|..+...+-+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~ 180 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIF 180 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEE
Confidence 46778888888887765432221222223568999999999999999999999999999999999988888887766643
No 360
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.55 E-value=0.6 Score=42.68 Aligned_cols=148 Identities=15% Similarity=0.139 Sum_probs=83.7
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc---------
Q 010816 118 PDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP--------- 188 (500)
Q Consensus 118 p~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--------- 188 (500)
..++.|+.|..+| +.++++......... .+...|..+...++-+.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i-~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI-LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeE-eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence 3578899998888 899998322222222 1233499999999877776665 599999997653322100
Q ss_pred ----ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-----eEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816 189 ----LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-----KCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 189 ----~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
.......+...+ ........+.+.....+.+.+|..... +....+. -...+.++.|..+ .++.|..
T Consensus 82 ~~~~~~~~~~~v~~f~---~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~~-~i~v~~~ 156 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFA---VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLGN-KICVGTS 156 (275)
T ss_pred cccccccccCCeeEEe---eccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeCC-EEEEEeC
Confidence 001111222222 001112234445555668888877542 2333332 2356778888844 5555554
Q ss_pred CCeEEEEeCCCCeeE
Q 010816 260 DCTIKVWETTQGKLI 274 (500)
Q Consensus 260 dg~i~lwd~~~~~~~ 274 (500)
+ ...+.|+.++...
T Consensus 157 ~-~f~~idl~~~~~~ 170 (275)
T PF00780_consen 157 K-GFYLIDLNTGSPS 170 (275)
T ss_pred C-ceEEEecCCCCce
Confidence 4 4677888876543
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.39 E-value=0.013 Score=36.58 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=28.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
..|.+++|+|...+||.|+.||.|.+|.+ +++
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 45899999999999999999999999988 443
No 362
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.31 E-value=0.31 Score=36.74 Aligned_cols=94 Identities=18% Similarity=0.271 Sum_probs=54.7
Q ss_pred eCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816 248 WGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (500)
Q Consensus 248 ~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (500)
|..+ ..|+.|+.|..||+|+- ...+.++.... .|.++....
T Consensus 10 ~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~-~v~~L~~~~---------------------------------- 52 (111)
T PF14783_consen 10 FDGDGENELLVGSDDFEIRVFKG--DEIVAEITETD-KVTSLCSLG---------------------------------- 52 (111)
T ss_pred cCCCCcceEEEecCCcEEEEEeC--CcEEEEEeccc-ceEEEEEcC----------------------------------
Confidence 3444 46999999999999974 35555555433 344433221
Q ss_pred CCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEE-CCC--C-CEEEEEeCCCcEE
Q 010816 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYF-SPD--G-QWVASASFDKSIK 385 (500)
Q Consensus 326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~-sp~--g-~~lasgs~Dg~i~ 385 (500)
...|+.+..+|+|-+|+..... . +.+. +..+.++++ ..+ | .-|++|=.+|.|-
T Consensus 53 ---~~~F~Y~l~NGTVGvY~~~~Rl--W-RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 53 ---GGRFAYALANGTVGVYDRSQRL--W-RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---CCEEEEEecCCEEEEEeCccee--e-eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3468888889998888742211 1 1111 122555543 333 3 3577877777664
No 363
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.23 E-value=0.022 Score=35.62 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=28.4
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN 138 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~ 138 (500)
...|.+++|+|...+||.|..||.|.|+.+.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999984
No 364
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.18 E-value=0.064 Score=53.05 Aligned_cols=117 Identities=17% Similarity=0.202 Sum_probs=86.8
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
...|.--+++..+++++.|+.-|.+.+|+-.++.... ...+-.+.+..+..+++..++|.|+..|.|.++-++.+....
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~ 112 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD 112 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence 3445555677789999999999999999987765432 223344556667788888888999999999999776643221
Q ss_pred c-----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 187 N-----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
. .-..|...|+++.|++ +..++.+|...|+|..-.+..
T Consensus 113 ~~~~t~~d~~~~~rVTal~Ws~-----~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 LDYVTPCDKSHKCRVTALEWSK-----NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceeeccccccCCceEEEEEecc-----cccEEeecCCCceEEEEEech
Confidence 1 1234788999999987 445899999999998877766
No 365
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.16 E-value=1.4 Score=44.45 Aligned_cols=117 Identities=13% Similarity=0.046 Sum_probs=65.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE---EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG---ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 238 (500)
+..|+.++.++.|.-.|..+|+..-+........+.. .............+++.++.|+.+.-.|..+++.+.....
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 3466667777888888888886543211110000100 0000000001124677888999999999999988765432
Q ss_pred --cc--ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEee
Q 010816 239 --HT--LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 239 --h~--~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~ 278 (500)
+. ..+++.-.-.++.++.+.. +|.|.-+|..+|+.+..+.
T Consensus 149 ~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 149 GDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 11 1122111111456666543 6899999999999876653
No 366
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.02 E-value=0.077 Score=53.77 Aligned_cols=103 Identities=20% Similarity=0.182 Sum_probs=60.6
Q ss_pred CcEEEEEECCCCCEEEEEe------CCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816 361 QLVNHVYFSPDGQWVASAS------FDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs------~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (500)
..+.+.++||||+.+|..- .|. .|.+++. .+.......+. ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~-----------------------------~~ 399 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH-----------------------------SL 399 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC-----------------------------CC
Confidence 4578899999999887665 243 4444443 22211111111 12
Q ss_pred eeeEEcCCCCEEEEEECC------------CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 433 SLYSWSADSRLLLSGSKD------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 433 ~~~~~s~~~~~l~s~s~d------------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+..+|+|+|+.+++.+.. +.+.+.++..++... ...+.|..+.|||||++|+... +++|++
T Consensus 400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 223789998877776532 233333444444332 2345799999999999988765 366654
No 367
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.01 E-value=0.26 Score=50.02 Aligned_cols=148 Identities=17% Similarity=0.174 Sum_probs=81.5
Q ss_pred CcccEEEEEEcCCCCeEEEEe------CCCc--EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-------
Q 010816 107 HTEAVLSVAFSPDGRQLASGS------GDTT--VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------- 171 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~------~d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------- 171 (500)
....+.+.+++|||+.+|... .|+. +.+++..... .....+. ....-.|+|||+.|++.+..
T Consensus 348 ~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 348 QMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 334678999999999887654 2444 4444543322 2122332 37788999998888776532
Q ss_pred -----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE---EECCCCeE-E---EEe-cC
Q 010816 172 -----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI---WDVSLRKC-V---ICL-SG 238 (500)
Q Consensus 172 -----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i---wd~~~~~~-~---~~~-~~ 238 (500)
+.+.+.++..+.... .....|..+.|+| ++.+++... ++.|.+ -....+.. + ..+ .+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSp-----DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS----RVPGPISELQLSR-----DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred ccCCCceEEEEeccCchhhh----ccCCCcCeEEECC-----CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 222222443332211 2245688999987 445555443 466665 22223321 1 011 12
Q ss_pred ccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816 239 HTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267 (500)
Q Consensus 239 h~~~v~~~~~~~~~~l~t~~~dg~i~lwd 267 (500)
-...+.++.|.+++.|+.+..++.-.+|.
T Consensus 495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred cCCccccceEecCCEEEEEecCCCCceEE
Confidence 22335778898888777766555444443
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.1 Score=49.94 Aligned_cols=148 Identities=17% Similarity=0.181 Sum_probs=92.8
Q ss_pred CCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC--EE-----EEEeCCCeEEEEeCCCCCccccccc
Q 010816 119 DGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK--HL-----VSGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 119 ~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--~l-----~s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
+.++|. ++.....++--|++.++.+-..+-|.. |.-+.+.|+.+ .| +.|-.|..|.-||++-.........
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 444444 344455677778888888877776665 77788888743 22 3455688899999863221000011
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~ 268 (500)
......+.-.|+..... ..+.++.||.+|.||+||-.....-..+.+-..+|..+..+.+|..+.|..+..+-+-++
T Consensus 423 q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred eccccccccccceeeec-CCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 11111222222222222 235799999999999999643333445677778899888888887777778888877775
No 369
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.32 Score=46.69 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=55.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS- 441 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~- 441 (500)
|..+..++.|..+|-.+.+|.+.++=.+....-..++.-+..|.|-.+.. ...++... ..-.+-..+|+|+.
T Consensus 106 V~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i------~~~~ftss-~~ltl~Qa~WHP~S~ 178 (741)
T KOG4460|consen 106 VYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPV------AERFFTSS-TSLTLKQAAWHPSSI 178 (741)
T ss_pred EEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecc------cceeeccC-CceeeeeccccCCcc
Confidence 67788999999999999999877764322211122222222233221111 01111100 01112234789886
Q ss_pred --CEEEEEECCCcEEEEECCCcccccc
Q 010816 442 --RLLLSGSKDSTLKVWDIRTQKLKQD 466 (500)
Q Consensus 442 --~~l~s~s~d~~v~iwd~~~~~~~~~ 466 (500)
..|..-+.|+.||+||+...+.+..
T Consensus 179 ~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 179 LDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred CCceEEEEecCcEEEEEecCCcchhhc
Confidence 6788889999999999987665543
No 370
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.83 E-value=2.6 Score=44.35 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=68.8
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcc-------cceEEEEeeeee-----------cCCCCceEEEEeCCCcEE
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-------KWITGISWEPVH-----------LNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-------~~v~~~~~~~~~-----------~~~~~~~~~s~s~dg~v~ 223 (500)
+..|+.++.++.|.-.|.++|+.+-+...... ....++.+.... .....++++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 55777788888898889888875432111000 001122221100 011234788899999999
Q ss_pred EEECCCCeEEEEecCccccE----------------EEEEeCCCCeEEEEeC----------CCeEEEEeCCCCeeEEEe
Q 010816 224 IWDVSLRKCVICLSGHTLAV----------------TCVKWGGDGVIYTGSQ----------DCTIKVWETTQGKLIREL 277 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h~~~v----------------~~~~~~~~~~l~t~~~----------dg~i~lwd~~~~~~~~~~ 277 (500)
-.|.++++.+..+.. +..| ++.-.--++.++.|+. +|.|+-+|..+|+.+..+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999988765532 1111 1100011456777653 688999999999988765
Q ss_pred e
Q 010816 278 K 278 (500)
Q Consensus 278 ~ 278 (500)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 371
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=95.73 E-value=0.88 Score=42.73 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=75.4
Q ss_pred CcEEEEECCCC----eEEEEe--cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCe-eEEEeec-CCceEEEEEecC
Q 010816 220 GDARIWDVSLR----KCVICL--SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGK-LIRELKG-HGHWVNSLALST 291 (500)
Q Consensus 220 g~v~iwd~~~~----~~~~~~--~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~-~~~~~~~-~~~~v~~~~~~~ 291 (500)
|.+.++++... ..+..+ ....++|+++.-- ++.|+.+ ..+.|.+|++...+ ....... ....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~- 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF- 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc-
Confidence 88999999873 122211 2345778888755 4454443 45899999988776 4332211 12234444332
Q ss_pred cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee--cccCcEEEEEEC
Q 010816 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--GHQQLVNHVYFS 369 (500)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~--~h~~~v~~l~~s 369 (500)
++.++.|.....+.++...........+. ....++.++.|-
T Consensus 139 -------------------------------------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l 181 (321)
T PF03178_consen 139 -------------------------------------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL 181 (321)
T ss_dssp -------------------------------------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE
T ss_pred -------------------------------------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe
Confidence 24677777766666653222111111111 234568888888
Q ss_pred CCCCEEEEEeCCCcEEEEeCC
Q 010816 370 PDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 370 p~g~~lasgs~Dg~i~lwd~~ 390 (500)
++++.++.+..+|.+.++...
T Consensus 182 ~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 182 VDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -SSSEEEEEETTSEEEEEEE-
T ss_pred cCCcEEEEEcCCCeEEEEEEC
Confidence 777799999999999999765
No 372
>PHA02713 hypothetical protein; Provisional
Probab=95.63 E-value=1.9 Score=43.86 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=35.5
Q ss_pred eEEEEcCCC-CCC-CceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCc
Q 010816 340 TMFLWEPAV-SKQ-PKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 340 ~v~~wd~~~-~~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~ 402 (500)
.+..||+.. ... ....+.........+.+ +|+..++|+.|+ .+..||..+.+.......|.
T Consensus 481 ~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 481 CIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred eEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 466788765 221 11222222222222333 688899999998 78888888877655444443
No 373
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.51 E-value=2.6 Score=40.98 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=26.1
Q ss_pred ccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~ 269 (500)
..+.++.|..+..|+.-..||.+++||+.
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 67888999988889999999999999986
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.049 Score=56.51 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=69.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC
Q 010816 371 DGQWVASASFDKSIKLWNGTTG-KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK 449 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~ 449 (500)
.+..++.|+.-|.+-..|.... .....-..-.++|.++ +|+.+|++++.|-.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsv---------------------------afn~dg~~l~~G~~ 150 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSV---------------------------AFNQDGSLLLAGLG 150 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceee---------------------------EecCCCceeccccC
Confidence 5667888888888888876542 1111111123444444 67999999999999
Q ss_pred CCcEEEEECCCccccccccCccc---CEEEEEEcCCCCEEEEEeCCCc
Q 010816 450 DSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 450 d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
+|.|.+||+..++..+.+..|.. .|..+.|..++..+.++..-|.
T Consensus 151 ~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 151 DGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred CCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 99999999999888877666654 4556677788888888888775
No 375
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.21 E-value=0.61 Score=45.33 Aligned_cols=111 Identities=25% Similarity=0.364 Sum_probs=60.5
Q ss_pred EEEEcCCCCeEEEE-eCCCcEEEE--eCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCe--EEEEeCCCCCccc
Q 010816 113 SVAFSPDGRQLASG-SGDTTVRLW--DLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGE--LQCWDPQTGKPSG 186 (500)
Q Consensus 113 ~~~~sp~~~~lat~-~~d~~i~iw--d~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~--i~~wd~~~~~~~~ 186 (500)
.-+|+|||++||-. ..||...|| |+.++. +..+..-.+.-..=.|+|||+.++-.+. .|. |.+.|++.+....
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 45899999988755 456665554 666555 2233332333336679999998876554 444 5555666554322
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeC-CCc--EEEEECCCCe
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASK-DGD--ARIWDVSLRK 231 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~--v~iwd~~~~~ 231 (500)
....+.... ...|+ +++++++..+. +|. |.+.|+.++.
T Consensus 321 iT~~~~~~~--~p~~S-----pdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 321 LTFSGGGNS--NPVWS-----PDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred eeccCCCCc--CccCC-----CCCCEEEEEeccCCceeeEEeccCCCC
Confidence 222221111 22333 35667766554 343 5555655444
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.21 E-value=0.71 Score=45.18 Aligned_cols=101 Identities=22% Similarity=0.290 Sum_probs=61.7
Q ss_pred EEEEEECCCCCEEEEE-eCCC----cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 363 VNHVYFSPDGQWVASA-SFDK----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 363 v~~l~~sp~g~~lasg-s~Dg----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
+....+||||+++|-+ +..| .++++|+.+|+.+... +....+ ..+.|
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------i~~~~~----------------------~~~~W 177 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------IENPKF----------------------SSVSW 177 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------EEEEES----------------------EEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------cccccc----------------------ceEEE
Confidence 4467899999998855 3444 5999999999765321 111111 11378
Q ss_pred cCCCCEEEEEECCC-----------cEEEEECCCcccc--ccccCcccC--EEEEEEcCCCCEEEEEeC
Q 010816 438 SADSRLLLSGSKDS-----------TLKVWDIRTQKLK--QDLPGHADE--VFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 438 s~~~~~l~s~s~d~-----------~v~iwd~~~~~~~--~~~~~h~~~--V~~l~~s~dg~~l~s~~~ 491 (500)
.++++.|+....|. .|++|++.+.... -.+.+.... ...+..++|+++|+....
T Consensus 178 ~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~ 246 (414)
T PF02897_consen 178 SDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSS 246 (414)
T ss_dssp CTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEE
T ss_pred eCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEE
Confidence 99988776665433 3788888765432 222332222 568899999999875433
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.14 E-value=3.6 Score=40.28 Aligned_cols=74 Identities=24% Similarity=0.310 Sum_probs=47.9
Q ss_pred ccEEEEEEcCCCCeEEEE-eCC----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC-----------
Q 010816 109 EAVLSVAFSPDGRQLASG-SGD----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG----------- 172 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~-~~d----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~----------- 172 (500)
-.+...+++|||++||-+ +.. .+++|.|+++++.+...-... ....+.|.+|++.|+-...+.
T Consensus 124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 344578899999998855 322 469999999987654221111 112399999988776554332
Q ss_pred eEEEEeCCCCC
Q 010816 173 ELQCWDPQTGK 183 (500)
Q Consensus 173 ~i~~wd~~~~~ 183 (500)
.|..|++.++.
T Consensus 203 ~v~~~~~gt~~ 213 (414)
T PF02897_consen 203 QVYRHKLGTPQ 213 (414)
T ss_dssp EEEEEETTS-G
T ss_pred EEEEEECCCCh
Confidence 37778876654
No 378
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.73 E-value=2.9 Score=39.29 Aligned_cols=130 Identities=16% Similarity=0.143 Sum_probs=76.5
Q ss_pred CcEEEEeCCCC----ceeE--EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEee
Q 010816 130 TTVRLWDLNTQ----TPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWE 202 (500)
Q Consensus 130 ~~i~iwd~~~~----~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~ 202 (500)
|.|.++++... ..+. ......++|++++-- ++ +|+.+. .+.|.+|++...+ ............+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999873 1221 123457889998865 34 444433 5899999988766 2221111122244444432
Q ss_pred eeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEec--CccccEEEEEeCCC-CeEEEEeCCCeEEEEeCC
Q 010816 203 PVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLS--GHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 203 ~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~--~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~ 269 (500)
..+++.|..-..+.++.... ...+..+. .....++++.+-.+ ..++.+..+|.+.++...
T Consensus 139 -------~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 -------KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp -------TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred -------ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 24788888888888774432 22222222 23456788887633 388899999999998754
No 379
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.63 E-value=3.1 Score=42.39 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=32.3
Q ss_pred CCCEEEEEECCC-----cEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 440 DSRLLLSGSKDS-----TLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 440 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
++.+.+.|+.|+ +|..||.++.+.... +......+..+.+ +++..+.||.|+.
T Consensus 475 ~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 475 NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN 534 (571)
T ss_pred CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence 677888888776 378899887665432 2222333333333 4567778887764
No 380
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=5.1 Score=38.64 Aligned_cols=130 Identities=18% Similarity=0.198 Sum_probs=83.1
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
..+....+..|.+.|............+. ....++++|+++.+..+.. ++++.+.|..+++.+.....-..+ ..
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~ 164 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TG 164 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ce
Confidence 34555557888888854433322222333 4567899999977766554 688999999888876653322222 11
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccc-c----ccCcccCEEEEEEcC
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQ-D----LPGHADEVFAVDWSP 481 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~-~----~~~h~~~V~~l~~s~ 481 (500)
.+++|+|..++.+. .++.|.+.|.......+ . ..-+ ..-..+.++|
T Consensus 165 ---------------------------~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-~~P~~i~v~~ 216 (381)
T COG3391 165 ---------------------------VAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-TGPAGIAVDP 216 (381)
T ss_pred ---------------------------EEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-CCCceEEECC
Confidence 25689999666655 78899999987766553 1 1111 2235788999
Q ss_pred CCCEEEEEeC
Q 010816 482 DGEKVASGGK 491 (500)
Q Consensus 482 dg~~l~s~~~ 491 (500)
+|+++...-.
T Consensus 217 ~g~~~yV~~~ 226 (381)
T COG3391 217 DGNRVYVAND 226 (381)
T ss_pred CCCEEEEEec
Confidence 9997765543
No 381
>PHA02713 hypothetical protein; Provisional
Probab=94.20 E-value=2.1 Score=43.54 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=25.9
Q ss_pred CCCEEEEEECCC--cEEEEECCCccccccccCccc
Q 010816 440 DSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHAD 472 (500)
Q Consensus 440 ~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~ 472 (500)
+|++.+.|+.|+ .+..||..+.+.....+.|..
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 788999999888 788999988887665555543
No 382
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.08 E-value=2.1 Score=38.47 Aligned_cols=106 Identities=24% Similarity=0.263 Sum_probs=61.5
Q ss_pred cEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 362 LVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
.+.+.+++++|+.+|... ....++++..... ....+.+. .+...+|+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~-~~~~~~g~-----------------------------~l~~PS~d 74 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP-VRPVLTGG-----------------------------SLTRPSWD 74 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc-ceeeccCC-----------------------------cccccccc
Confidence 578899999999887665 2234555443221 11111111 11223688
Q ss_pred CCCCEEEEEECCCcEEEEE-CCCccccc---cccCcccCEEEEEEcCCCCEEEEEe---CCCcEEE
Q 010816 439 ADSRLLLSGSKDSTLKVWD-IRTQKLKQ---DLPGHADEVFAVDWSPDGEKVASGG---KDRVLKL 497 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd-~~~~~~~~---~~~~h~~~V~~l~~s~dg~~l~s~~---~D~~v~i 497 (500)
+++...+....+...+++. ...++... ....-.+.|.++.+||||.++|... .+++|.+
T Consensus 75 ~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v 140 (253)
T PF10647_consen 75 PDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV 140 (253)
T ss_pred CCCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE
Confidence 9988777777677777774 33332211 1122222899999999999988665 3455544
No 383
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.79 E-value=4.7 Score=35.96 Aligned_cols=167 Identities=12% Similarity=0.190 Sum_probs=89.0
Q ss_pred ccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 104 IAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
+.|-.+.+..|+|+|+.. ++|.....+.|...+.. ++.+....-. -+..-.|++..++.++++--.++.+.+.++..
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 345555699999999866 45555667788777764 4555443221 34578889988887777766689998888743
Q ss_pred CCc-cc---------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC---CeEEEE--e------cCcc
Q 010816 182 GKP-SG---------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---RKCVIC--L------SGHT 240 (500)
Q Consensus 182 ~~~-~~---------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~---~~~~~~--~------~~h~ 240 (500)
... .. .....++..+.+++|.|.. ++|+.+-...-.+++.+.. ...+.. . ....
T Consensus 96 ~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-----~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 96 DTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-----NRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp --TT--EEEEEEEE---S---SS--EEEEEETTT-----TEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred cccccchhhceEEecccccCCCcceEEEEEcCCC-----CEEEEEeCCCChhhEEEccccCccceeecccccccccccee
Confidence 211 00 0112355678999998743 3565565555566666543 111111 1 1123
Q ss_pred ccEEEEEeCCC-C-eEEEEeCCCeEEEEeCCCCeeEEEe
Q 010816 241 LAVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL 277 (500)
Q Consensus 241 ~~v~~~~~~~~-~-~l~t~~~dg~i~lwd~~~~~~~~~~ 277 (500)
..++++++.+. + .++.......|-.+| .+|+.+..+
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 45677888764 2 566677788888888 567665544
No 384
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.74 E-value=9.1 Score=39.11 Aligned_cols=104 Identities=20% Similarity=0.300 Sum_probs=55.2
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-C-----eEEEEeCCCCCc
Q 010816 119 DGRQLASGSGD------TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-G-----ELQCWDPQTGKP 184 (500)
Q Consensus 119 ~~~~lat~~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-----~i~~wd~~~~~~ 184 (500)
.+.+++.||.+ ..+..||..++.-.. .+. ....-.++++. ++...++|+.| | ++-.||+.+.+.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45566777766 357788887663221 111 22223334443 45777888888 3 467788876653
Q ss_pred ccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCC-----cEEEEECCCCe
Q 010816 185 SGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSLRK 231 (500)
Q Consensus 185 ~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg-----~v~iwd~~~~~ 231 (500)
... ++....... +++ ...+..++.||.|| ++-.||..+.+
T Consensus 362 ~~~a~M~~~R~~~-~v~------~l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 362 TPVAPMNTKRSDF-GVA------VLDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred eccCCccCccccc-eeE------EECCEEEEEeccccccccccEEEecCCCCc
Confidence 221 111111100 111 11345788899886 46667776554
No 385
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.56 E-value=1.5 Score=38.96 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=43.5
Q ss_pred EEcCCCCEEEEEECC-----CcEEEEECCCc-cccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 436 SWSADSRLLLSGSKD-----STLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d-----~~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.|||||.+|+..-.| |.|-|||.+.+ +.+..++.|.-.--.+.|.+||+.|+.+..
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 479999999987655 67999998743 345667777666678899999999987754
No 386
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.49 E-value=12 Score=39.59 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=44.7
Q ss_pred CCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 440 DSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+|+++|. -...|++|+..+.+.++.-..|...+..+...-.|..++.|+--+.+.+
T Consensus 839 ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 839 NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL 894 (1096)
T ss_pred CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence 6776664 4567999999988777766678888999999888999999988776654
No 387
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.40 E-value=0.33 Score=29.36 Aligned_cols=31 Identities=29% Similarity=0.323 Sum_probs=26.3
Q ss_pred ccEEEEEEcCCC---CeEEEEeCCCcEEEEeCCC
Q 010816 109 EAVLSVAFSPDG---RQLASGSGDTTVRLWDLNT 139 (500)
Q Consensus 109 ~~V~~~~~sp~~---~~lat~~~d~~i~iwd~~~ 139 (500)
++|.+++|+|+. .+||.+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 5899988889999999974
No 388
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.01 E-value=6 Score=36.44 Aligned_cols=154 Identities=16% Similarity=0.209 Sum_probs=73.5
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGK 183 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~ 183 (500)
.+-.+.+..+..++||++++.++.-....-||--...=...-..-...|..+.|+|++.+.+.+ ..|.|++=+ .....
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3445778899999999999988766666778754321111122345789999999998776654 788888776 22221
Q ss_pred ccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEE
Q 010816 184 PSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTG 257 (500)
Q Consensus 184 ~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~ 257 (500)
.-. .+.....-.+..++|.+ +...+++| ..|.+.. ....++.-..-. .-......+.|..+..-+.-
T Consensus 220 ~w~~~~~~~~~~~~~~ld~a~~~-----~~~~wa~g-g~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l 292 (302)
T PF14870_consen 220 TWSEPIIPIKTNGYGILDLAYRP-----PNEIWAVG-GSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL 292 (302)
T ss_dssp EE---B-TTSS--S-EEEEEESS-----SS-EEEEE-STT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE
T ss_pred ccccccCCcccCceeeEEEEecC-----CCCEEEEe-CCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEE
Confidence 111 11112223466777765 23345544 4444432 222333222111 12334667777666666667
Q ss_pred eCCCeEEEE
Q 010816 258 SQDCTIKVW 266 (500)
Q Consensus 258 ~~dg~i~lw 266 (500)
+.+|.|--|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 778876544
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=92.83 E-value=7.4 Score=35.45 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=78.7
Q ss_pred CceEEEEeCCCcEEEEECC-CCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee----------
Q 010816 210 CRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK---------- 278 (500)
Q Consensus 210 ~~~~~s~s~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~---------- 278 (500)
+.+++.|..+| +.+++.. ........ +...|..+...++-.++..=.|+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccc
Confidence 45788888888 8999983 22222222 2233777777665333333346999999986533222100
Q ss_pred ----cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---
Q 010816 279 ----GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ--- 351 (500)
Q Consensus 279 ----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~--- 351 (500)
.....+...+ ..........+......++.+|.......
T Consensus 84 ~~~~~~~~~v~~f~----------------------------------~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~ 129 (275)
T PF00780_consen 84 PTKLPETKGVSFFA----------------------------------VNGGHEGSRRLCVAVKKKILIYEWNDPRNSFS 129 (275)
T ss_pred cccccccCCeeEEe----------------------------------eccccccceEEEEEECCEEEEEEEECCccccc
Confidence 0000011100 00011122344444555888776544211
Q ss_pred CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816 352 PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 352 ~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 398 (500)
...+--.-.+.+.+++|. ++.|+.|..+ ...+.|+.++.....+
T Consensus 130 ~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 130 KLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred ceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 111222334678888888 6677777655 4788898877655443
No 390
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.68 E-value=8.2 Score=35.59 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=54.1
Q ss_pred ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
..-...+..+..++||+++++++......-||.-.......-+.....|.. ..
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~---------------------------~g 193 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQS---------------------------MG 193 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEE---------------------------EE
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehh---------------------------ce
Confidence 344466888889999999999877666678875432222222222233333 36
Q ss_pred EcCCCCEEEEEECCCcEEEEEC-CCccc----cccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 437 WSADSRLLLSGSKDSTLKVWDI-RTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~v~iwd~-~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
|+|++.+.+.+ ..|.|++=+. ...+. ......-.-.+..++|.+++...++|+..
T Consensus 194 f~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 194 FSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp E-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred ecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 78888776644 7777777661 11111 11111122348999999998777766654
No 391
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.61 E-value=0.16 Score=51.83 Aligned_cols=86 Identities=17% Similarity=0.248 Sum_probs=55.6
Q ss_pred CCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE
Q 010816 369 SPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS 448 (500)
Q Consensus 369 sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s 448 (500)
-++.-++..+-.++.|++....+... ..+++|...+..+.|- ..++ ...-..||||..+|.++
T Consensus 192 ~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~-------~~g~---------~~l~~lSpDGtv~a~a~ 254 (1283)
T KOG1916|consen 192 AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFF-------AEGV---------LKLASLSPDGTVFAWAI 254 (1283)
T ss_pred ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHH-------hhch---------hhheeeCCCCcEEEEee
Confidence 34667888888889998887665432 4466787776665431 0011 11113599999999999
Q ss_pred CCCcEEEEECC-----CccccccccCcc
Q 010816 449 KDSTLKVWDIR-----TQKLKQDLPGHA 471 (500)
Q Consensus 449 ~d~~v~iwd~~-----~~~~~~~~~~h~ 471 (500)
.||.++.|.+. ..++...+..|.
T Consensus 255 ~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 255 SDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred cCCccceeeeeeeccccHhhhhccCCCC
Confidence 99999999764 223444555565
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=92.52 E-value=7.7 Score=34.90 Aligned_cols=141 Identities=20% Similarity=0.201 Sum_probs=81.3
Q ss_pred cEEEEEEcCCCCeEEEEe---CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCCcc
Q 010816 110 AVLSVAFSPDGRQLASGS---GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD-PQTGKPS 185 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~---~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd-~~~~~~~ 185 (500)
.+.+.+++++++.+|... ....+.++......... +.+ ..+..-+|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887665 33345555443322221 122 3677889999987777766667777773 3333322
Q ss_pred cccccCc--ccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECC---CC--e----EEEEecCccccEEEEEeCCC
Q 010816 186 GNPLSGH--KKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS---LR--K----CVICLSGHTLAVTCVKWGGD 251 (500)
Q Consensus 186 ~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~---~~--~----~~~~~~~h~~~v~~~~~~~~ 251 (500)
....... ...|.++.++| ++.+++.-. .++.|.+--+. .+ . ...........+.++.|.++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSp-----DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSP-----DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred eEEecccccCCceEEEEECC-----CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 1111111 12788888876 455655443 34666665442 12 0 11111233457889999988
Q ss_pred CeEEEEe
Q 010816 252 GVIYTGS 258 (500)
Q Consensus 252 ~~l~t~~ 258 (500)
+.|+...
T Consensus 177 ~~L~V~~ 183 (253)
T PF10647_consen 177 STLVVLG 183 (253)
T ss_pred CEEEEEe
Confidence 8766544
No 393
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=92.17 E-value=0.072 Score=54.25 Aligned_cols=70 Identities=17% Similarity=0.186 Sum_probs=50.8
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEE
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIA-----------WSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~-----------~s~~~~~l~s~~~d~~i~~w 177 (500)
.-|.-+.|.++.-++..+-.+++|++-++.+... ..+.+|..++..++ .+|||+.++.++.||.+++|
T Consensus 184 ~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~ 262 (1283)
T KOG1916|consen 184 QLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFY 262 (1283)
T ss_pred ceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCcccee
Confidence 4456666777778888888899999887764322 22345777766554 48899999999999998888
Q ss_pred eC
Q 010816 178 DP 179 (500)
Q Consensus 178 d~ 179 (500)
-+
T Consensus 263 Qi 264 (1283)
T KOG1916|consen 263 QI 264 (1283)
T ss_pred ee
Confidence 65
No 394
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.04 E-value=6.2 Score=35.31 Aligned_cols=116 Identities=24% Similarity=0.361 Sum_probs=67.4
Q ss_pred EEEEcCCCCCCCc-------eeeecccCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCC-ceEEEEeCCcccEEE
Q 010816 341 MFLWEPAVSKQPK-------TRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTG-KFVAVFRGHVGPVYQ 407 (500)
Q Consensus 341 v~~wd~~~~~~~~-------~~~~~h~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~~-~~~~~~~~h~~~v~~ 407 (500)
..++|......++ ..+.+|. .|||||.+|...-.| |.|-|||.+.+ +.+..+.+|.-.-..
T Consensus 93 ~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHe 166 (366)
T COG3490 93 AMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHE 166 (366)
T ss_pred EEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcce
Confidence 3456655443332 2345555 699999999876554 67899998754 224445554322222
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC------------------CcEEEEECCCccccc--cc
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD------------------STLKVWDIRTQKLKQ--DL 467 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d------------------~~v~iwd~~~~~~~~--~~ 467 (500)
+ .|.+||+.++.+... -..-+-|..++++++ ++
T Consensus 167 v---------------------------~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 167 V---------------------------TLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred e---------------------------EEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 2 467899988876531 123345555666554 23
Q ss_pred c--CcccCEEEEEEcCCCCEEEEE
Q 010816 468 P--GHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 468 ~--~h~~~V~~l~~s~dg~~l~s~ 489 (500)
+ -+.-.|-.++..+||...+-+
T Consensus 220 p~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 220 PASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred chhhhhcceeeeeeCCCCcEEEEE
Confidence 3 234456777777777655543
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.03 E-value=0.7 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.6
Q ss_pred cEEEEEECCC-C--CEEEEEeCCCcEEEEeCCC
Q 010816 362 LVNHVYFSPD-G--QWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 362 ~v~~l~~sp~-g--~~lasgs~Dg~i~lwd~~~ 391 (500)
.|+++.|||+ + .+|+.+-.-+.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 5789999985 4 5899888889999999985
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.90 E-value=3 Score=43.48 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=51.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD- 440 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 440 (500)
.|..|.++|+|.+||..|..|...+.=.+....-..+++-...+.+-.+ .....++ ..+.+-.+..+.|+|.
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~------~v~~~~~-~~~~~~~i~qv~WhP~s 158 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTV------PVDERFF-TSNSSLEIKQVRWHPWS 158 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEE------Eechhhc-cCCCCceEEEEEEcCCC
Confidence 4888999999999999988775544322221111112222222221111 0000110 1111223444578876
Q ss_pred --CCEEEEEECCCcEEEEECCC
Q 010816 441 --SRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 441 --~~~l~s~s~d~~v~iwd~~~ 460 (500)
+..|+.-..|+++|+||+..
T Consensus 159 ~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 159 ESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCeEEEEecCCEEEEEecCC
Confidence 57999999999999999965
No 397
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.76 E-value=11 Score=34.96 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=62.4
Q ss_pred cccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCC--CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816 358 GHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTT--GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434 (500)
Q Consensus 358 ~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (500)
.+-..-+.|+||||++.|..+.. .+.|.-|++.. +..-. . ...+.+. . .....-.
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~------~-~~~~~~~------~---------~~G~PDG 217 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGG------R-RGFVDFD------E---------EPGLPDG 217 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCC------c-ceEEEcc------C---------CCCCCCc
Confidence 33445678999999977766544 57888887653 21100 0 0000000 0 0000000
Q ss_pred eEEcCCCCEEEEEECCC-cEEEEECCCccccccccCcccCEEEEEE-cCCCCEEEEEeCC
Q 010816 435 YSWSADSRLLLSGSKDS-TLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDGEKVASGGKD 492 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg~~l~s~~~D 492 (500)
.+...+|.+-+++-.+| .|.+|+.. ++++....-....+++++| .|+.+.|...+..
T Consensus 218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 12245666665555554 89999988 7777665555566788888 4556666655543
No 398
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=91.73 E-value=11 Score=34.94 Aligned_cols=41 Identities=20% Similarity=0.285 Sum_probs=27.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCC-cEEEEeCCCCceEEEEeCCc
Q 010816 361 QLVNHVYFSPDGQWVASASFDK-SIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg-~i~lwd~~~~~~~~~~~~h~ 402 (500)
...-.++...+|.+-+++-.+| .|.+|+.. |+++..++-..
T Consensus 213 G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 213 GLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred CCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC
Confidence 3344566777787775554554 88999887 88877666543
No 399
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.24 E-value=7.2 Score=39.76 Aligned_cols=106 Identities=19% Similarity=0.264 Sum_probs=68.8
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----C---
Q 010816 159 SADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----R--- 230 (500)
Q Consensus 159 s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~--- 230 (500)
+.-++..+.-+....+.|||...+.......-...+.|..+.|... .++..+++.|....|.++.-.. .
T Consensus 38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst---~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTST---PDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeec---CCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 3334433333344579999998876443333345678999999864 3556788888999999985421 1
Q ss_pred -eEEEE--ecCcc-ccEEEEEeCCCCeEEEEeCCCeEEEEeC
Q 010816 231 -KCVIC--LSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWET 268 (500)
Q Consensus 231 -~~~~~--~~~h~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~ 268 (500)
..+.. +..|+ .+|.+..|.++|.++.|+. +.+.|+|-
T Consensus 115 w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG-Nqlfv~dk 155 (631)
T PF12234_consen 115 WAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG-NQLFVFDK 155 (631)
T ss_pred cceeEEEEeecCCCCCccceeEecCCeEEEEeC-CEEEEECC
Confidence 11221 23444 5788999999998887664 56778774
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=91.15 E-value=5.7 Score=40.45 Aligned_cols=106 Identities=15% Similarity=0.247 Sum_probs=63.7
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
+.-|.-++.-++-+....+.|||.+.+.+.. .| ...+.|..+.+ ...|+|+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDW-------------------------tst~d~qs 88 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDW-------------------------TSTPDGQS 88 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeecee-------------------------eecCCCCE
Confidence 3344444444444444579999998876432 22 23455555544 23689999
Q ss_pred EEEEECCCcEEEEECCC---------ccccc--cccCcc-cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 444 LLSGSKDSTLKVWDIRT---------QKLKQ--DLPGHA-DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 444 l~s~s~d~~v~iwd~~~---------~~~~~--~~~~h~-~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+++.|..+.|.+|--.. ...++ .+..|. .+|.+..|.++|..++.+| +.+.|++
T Consensus 89 iLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 89 ILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD 154 (631)
T ss_pred EEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence 99999999999985311 01111 123344 4788999999986554443 4566654
No 401
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.78 E-value=0.034 Score=52.63 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=94.1
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcccccccC
Q 010816 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSG 191 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~ 191 (500)
...|-|.+..++.++.+..+..||-..+.-+ . ...++....++|..+++.++. +-..+.+.+||+.+.......+.+
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~~l-e-~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg 116 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQVIL-E-LNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG 116 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcceec-c-cCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence 4456777777899999999999986543221 1 123445567888888776554 556789999998765322111111
Q ss_pred cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEE
Q 010816 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIK 264 (500)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~ 264 (500)
... -.=..|++.. ..++.+-..|.+.|++..+.+.+.....|...++++++..+++.+.++.|..+.
T Consensus 117 ~~s-~sll~wsKg~-----~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 117 TSS-KSLLAWSKGT-----PELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred cch-HHHHhhccCC-----ccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 111 0114455433 234556678899999988877666666699999999999888877777665443
No 402
>PRK10115 protease 2; Provisional
Probab=90.50 E-value=25 Score=36.93 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=47.3
Q ss_pred cEEEEEEcCCCCeEEEEeC-----CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEe
Q 010816 110 AVLSVAFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA------GELQCWD 178 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d------~~i~~wd 178 (500)
.+..+.++||+++||-+.. ...+++-|+.++..+...-.... ..++|.+|++.|+-...+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 4667889999999886632 23588889988764322211111 459999999877655432 3577788
Q ss_pred CCCC
Q 010816 179 PQTG 182 (500)
Q Consensus 179 ~~~~ 182 (500)
+.++
T Consensus 206 lgt~ 209 (686)
T PRK10115 206 IGTP 209 (686)
T ss_pred CCCC
Confidence 8776
No 403
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.12 E-value=7.3 Score=35.09 Aligned_cols=116 Identities=8% Similarity=0.173 Sum_probs=75.6
Q ss_pred ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
.|-...+.++.|+|+.+.|.+......-.||=..+|.++.+..-.. + .-...+.
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-----~---------------------~DpE~Ie 135 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-----F---------------------SDPETIE 135 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-----c---------------------CChhHeE
Confidence 3445569999999999999888887777777667788776543110 0 0001124
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCcccc----------ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 437 WSADSRLLLSGSKDSTLKVWDIRTQKLK----------QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~----------~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
|..+|++.++--.++.+.++.+..+... .....-+..--.++|+|.++.|..+-+-+=++|+
T Consensus 136 yig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~ 207 (316)
T COG3204 136 YIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIF 207 (316)
T ss_pred EecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEE
Confidence 5667777777777888888776544211 1111124566789999999998888776655554
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.65 E-value=6.8 Score=38.05 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=46.1
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
..+++.+|..|-|++|| +.+......+.+-...|..+..+.+|.++.+.+.. .+-+-|+.
T Consensus 573 sGyIa~as~kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 45799999999999999 34445555667777889999999999988776553 56666654
No 405
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=89.07 E-value=19 Score=33.51 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.5
Q ss_pred cEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEE-eCCCcEEEecC
Q 010816 452 TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASG-GKDRVLKLWMG 500 (500)
Q Consensus 452 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~-~~D~~v~iW~~ 500 (500)
.|-++|+.+++.+..++. ...+.++..+.|.+ +|++. ..++.+.+|+.
T Consensus 270 eVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~ 319 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDA 319 (342)
T ss_dssp EEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEET
T ss_pred EEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeC
Confidence 377789999998887763 23577888888766 66554 45789999874
No 406
>PRK13684 Ycf48-like protein; Provisional
Probab=89.05 E-value=20 Score=33.77 Aligned_cols=150 Identities=13% Similarity=0.151 Sum_probs=79.7
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEE-EEeCCCCceeEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVR-LWDLNTQTPMFKC-TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~-iwd~~~~~~~~~~-~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 185 (500)
...+.++.+.|++.+++++. .|.+. -+|- .++..... ..-...+.++.+.+++..++.+ ..|.+++=....|..-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45788999999987776654 34333 2221 12211111 2334678899999998876654 4676653223333321
Q ss_pred cccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEEeC
Q 010816 186 GNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 186 ~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
.... ......+.++.+.+ + ..+..++.+|.+.. ....++.-.... +-......+.|..++..+..+.
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~-----~-~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT-----P-GEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccCCccccccceeeEEEcC-----C-CCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 1100 01122345565544 2 24555666775543 333333322221 1123466677776667777888
Q ss_pred CCeEEEEe
Q 010816 260 DCTIKVWE 267 (500)
Q Consensus 260 dg~i~lwd 267 (500)
.|.|--|+
T Consensus 322 ~G~il~~~ 329 (334)
T PRK13684 322 RGVLLRYV 329 (334)
T ss_pred CceEEEec
Confidence 88887665
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=88.74 E-value=6.9 Score=40.33 Aligned_cols=117 Identities=13% Similarity=0.152 Sum_probs=76.5
Q ss_pred cEEEEEEcC--CCCeEEEEeCCCcEEEEeCCC-------C-------------ceeEEecCCCCCEEEEEEc--CCCCEE
Q 010816 110 AVLSVAFSP--DGRQLASGSGDTTVRLWDLNT-------Q-------------TPMFKCTGHKNWVLCIAWS--ADGKHL 165 (500)
Q Consensus 110 ~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~v~~s--~~~~~l 165 (500)
.|.-+.... ....|+.+..||.|.+|.+++ . +|.+.+. -...+..++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554433 445788999999999997521 0 1222332 23468889988 777888
Q ss_pred EEEeCCCeEEEEeCCC--CCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEEC
Q 010816 166 VSGSKAGELQCWDPQT--GKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDV 227 (500)
Q Consensus 166 ~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~ 227 (500)
|.++....|.||-... .+.....-..|...|.+++|.+......+. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8888888888875433 221111122356778999998866444333 6778899999999887
No 408
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=88.70 E-value=8.3 Score=38.27 Aligned_cols=119 Identities=13% Similarity=0.295 Sum_probs=69.3
Q ss_pred cccCcEEEEEECCC----CCEEEEEeCCCcEEEEeCCC-----CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816 358 GHQQLVNHVYFSPD----GQWVASASFDKSIKLWNGTT-----GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (500)
Q Consensus 358 ~h~~~v~~l~~sp~----g~~lasgs~Dg~i~lwd~~~-----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
|.-.-|..++|.|- ...|.+......|.+|.+.. .+.+..-..+-+. .+.+..
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-----------------~~pvLp- 115 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-----------------PFPVLP- 115 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-----------------CcccCC-
Confidence 44456889999984 33455556788999998642 2222111000000 000111
Q ss_pred cccceeeEEcCCCCEEEEEECCCcEEEEECCC--ccccccccCcccCEEEEEEcCCCCEEEEE-eCCCcEEEec
Q 010816 429 SCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVASG-GKDRVLKLWM 499 (500)
Q Consensus 429 ~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~dg~~l~s~-~~D~~v~iW~ 499 (500)
....|+|....|+.-.....-.+++++. .+....+.+ .+.|.+.+|..||++|+.+ |..-.-+||+
T Consensus 116 ----QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~-~G~IhCACWT~DG~RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 116 ----QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT-SGLIHCACWTKDGQRLVVAVGSSLHSYIWD 184 (671)
T ss_pred ----CcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC-CceEEEEEecCcCCEEEEEeCCeEEEEEec
Confidence 1125899998888765554444565543 233334433 4679999999999999876 4444567786
No 409
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=88.55 E-value=18 Score=32.38 Aligned_cols=207 Identities=14% Similarity=0.195 Sum_probs=92.6
Q ss_pred ecCccccEEEEEeCCC-CeEEE-EeCCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 236 ~~~h~~~v~~~~~~~~-~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
+.+-...++.++|.++ +.|++ ....+.|.-.+. +|+.++.+.-.+ .....++...
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g--------------------- 74 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG--------------------- 74 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S---------------------
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC---------------------
Confidence 4455566899999985 55554 566777877776 577777664332 2223333221
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCC--ce---ee-----ecccCcEEEEEECCCCCEEEEEeCC
Q 010816 313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQP--KT---RM-----TGHQQLVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~--~~---~~-----~~h~~~v~~l~~sp~g~~lasgs~D 381 (500)
...++..+ .++.+.+++....... .. .+ ..+...+..++|+|.++.|..+-..
T Consensus 75 ----------------~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 75 ----------------NGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKER 138 (248)
T ss_dssp ----------------TTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEES
T ss_pred ----------------CCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCC
Confidence 22344444 4777777776322111 11 11 1233458899999987777777666
Q ss_pred CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCC
Q 010816 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~ 460 (500)
.-.++|.+.... ....+........ ......+ ...+.+++.|.. ++++-......+..+| ..
T Consensus 139 ~P~~l~~~~~~~-------~~~~~~~~~~~~~-----~~~~~~~----~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~ 201 (248)
T PF06977_consen 139 KPKRLYEVNGFP-------GGFDLFVSDDQDL-----DDDKLFV----RDLSGLSYDPRTGHLLILSDESRLLLELD-RQ 201 (248)
T ss_dssp SSEEEEEEESTT--------SS--EEEE-HHH-----H-HT--S----S---EEEEETTTTEEEEEETTTTEEEEE--TT
T ss_pred CChhhEEEcccc-------Cccceeecccccc-----cccccee----ccccceEEcCCCCeEEEEECCCCeEEEEC-CC
Confidence 555666543210 0000000000000 0000000 112344556654 4555555666777777 34
Q ss_pred cccccc--ccC--c-----ccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 461 QKLKQD--LPG--H-----ADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 461 ~~~~~~--~~~--h-----~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
++.+.. +.. | -..--.++|.++| .|...++-+..+++
T Consensus 202 G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G-~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 202 GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDG-NLYIVSEPNLFYRF 247 (248)
T ss_dssp --EEEEEE-STTGGG-SS---SEEEEEE-TT---EEEEETTTEEEEE
T ss_pred CCEEEEEEeCCcccCcccccCCccEEEECCCC-CEEEEcCCceEEEe
Confidence 443322 221 1 1234689999998 56666677766654
No 410
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.19 E-value=22 Score=34.05 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=33.2
Q ss_pred eEEcCCCCEEEEEECC-------------------CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 435 YSWSADSRLLLSGSKD-------------------STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d-------------------~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+.|.|||.+.++-+.. +.|..++..+++......++ .-.+.++|+|+|+.+++-..+
T Consensus 129 l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 129 LAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 3567888766654421 34555555544432222333 335689999999887764433
No 411
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=87.81 E-value=2.1 Score=25.25 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=19.4
Q ss_pred cCEEEEEEcCCCCEEEEEe-CC--CcEEEec
Q 010816 472 DEVFAVDWSPDGEKVASGG-KD--RVLKLWM 499 (500)
Q Consensus 472 ~~V~~l~~s~dg~~l~s~~-~D--~~v~iW~ 499 (500)
..-....|||||++|+-++ .+ |.-.||.
T Consensus 9 ~~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 9 GDDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SSEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred ccccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 4557889999999987554 44 6777763
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.76 E-value=5.1 Score=41.89 Aligned_cols=73 Identities=19% Similarity=0.223 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeC---------CCCceeEEe-----------cCCCCCEEEEEEcCC---CCEEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDL---------NTQTPMFKC-----------TGHKNWVLCIAWSAD---GKHLV 166 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~---------~~~~~~~~~-----------~~h~~~v~~v~~s~~---~~~l~ 166 (500)
.|..|.++|+|++||-.|..|.+.+.=. +.+.....+ ..+...|..+.|+|. +.+|+
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~ 165 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV 165 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence 5888999999999999888765444311 112221111 234567999999986 57899
Q ss_pred EEeCCCeEEEEeCCCC
Q 010816 167 SGSKAGELQCWDPQTG 182 (500)
Q Consensus 167 s~~~d~~i~~wd~~~~ 182 (500)
.-..|+++|+||+...
T Consensus 166 vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 166 VLTSDNTLRLYDISDP 181 (717)
T ss_pred EEecCCEEEEEecCCC
Confidence 9999999999998654
No 413
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.69 E-value=10 Score=32.90 Aligned_cols=100 Identities=12% Similarity=0.182 Sum_probs=61.8
Q ss_pred EEEEECCCCCEE-EEEeCCCcEEEEe--CCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 364 NHVYFSPDGQWV-ASASFDKSIKLWN--GTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 364 ~~l~~sp~g~~l-asgs~Dg~i~lwd--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
+.++|+.+.+.+ .+-+.+-.|.-|| ..+|.... ...+..++-........|.+. +...+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn-----r~~i~dlrk~~~~e~~~PDGm-------------~ID~e 222 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN-----RKVIFDLRKSQPFESLEPDGM-------------TIDTE 222 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccC-----cceeEEeccCCCcCCCCCCcc-------------eEccC
Confidence 567788776544 4556677887787 56665421 112222221100000111111 12446
Q ss_pred CCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC
Q 010816 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP 481 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 481 (500)
|.+.++.-+.++|...|..+++.+..+.--...|++++|-.
T Consensus 223 G~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 223 GNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred CcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 78888888889999999999999877666678999999964
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.65 E-value=4.2 Score=35.56 Aligned_cols=64 Identities=14% Similarity=0.303 Sum_probs=48.4
Q ss_pred EcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-------c-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 116 FSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-------T-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 116 ~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-------~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
+..++++|..-..+|.+++||+.+++.+..- . .....|..+..+.+|.-|++-+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 4567889999999999999999887654321 1 3456788889998888777665 5778888765
No 415
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.39 E-value=5.5 Score=38.62 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=73.5
Q ss_pred CCCEEE-EEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec----------------------CCCCceeeee
Q 010816 371 DGQWVA-SASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR----------------------YPSNFYCVVD 427 (500)
Q Consensus 371 ~g~~la-sgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~----------------------~~~~~~~~~~ 427 (500)
|..+|. .|+....++--|++.|+.+..+..|...+- .+.+-..+. ...+...+..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvV--qy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVV--QYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCccee--ecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 444443 555666777778888998888877765432 222111110 0001111111
Q ss_pred ccccceeeEEc----CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 428 MSCCMSLYSWS----ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 428 ~~~~~~~~~~s----~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.....+...|| ....++|.||.-|-||+||.-..+....+++-...|..+..+.+|+++.+...
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 11112222232 34569999999999999997776666678888889999999999999876655
No 416
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.58 E-value=25 Score=31.90 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=92.6
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
+.|-...|.++.|+|+.+.|++......-.||=-..|..+.+. .+. .....+.|..++.++++-=.++.+.+..+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 3455566999999999999998887777777755556555433 222 2234567777777777766777777776544
Q ss_pred CCccc------ccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE---EEEecCcc-------cc
Q 010816 182 GKPSG------NPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHT-------LA 242 (500)
Q Consensus 182 ~~~~~------~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~h~-------~~ 242 (500)
..... .++ ...+....+++|.|.. ++|..+-.-.-++|+.+..... +.....++ ..
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-----~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-----HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCC-----ceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeec
Confidence 32110 011 1126677899998743 4666666666666665542210 00111111 23
Q ss_pred EEEEEeCC--CCeEEEEeCCCeEEEEeC
Q 010816 243 VTCVKWGG--DGVIYTGSQDCTIKVWET 268 (500)
Q Consensus 243 v~~~~~~~--~~~l~t~~~dg~i~lwd~ 268 (500)
|+.+.|++ +..++-+..++.+.-.|.
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~ 262 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDL 262 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEec
Confidence 55566663 334555666666666664
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.18 E-value=6.2 Score=34.55 Aligned_cols=61 Identities=13% Similarity=0.230 Sum_probs=46.4
Q ss_pred cCCCCEEEEEECCCcEEEEECCCcccccc-------cc-------CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQD-------LP-------GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-------~~-------~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..++.+|++-..+|.+++||+.+++.... +. .....|..+..+.+|.-|++-+. |..+.|+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~ 93 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYS 93 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEec
Confidence 45788999999999999999998765322 21 34467889999999988877654 6677775
No 418
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.01 E-value=51 Score=35.04 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=66.8
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC--------EEEEEEc----------------CCCCEEEEEeCCCeEE
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW--------VLCIAWS----------------ADGKHLVSGSKAGELQ 175 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~--------v~~v~~s----------------~~~~~l~s~~~d~~i~ 175 (500)
+..|..++.++.|.-.|..+++.+.+..-.... ...+++. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777777888888888888777655322110 1112221 1345888899999999
Q ss_pred EEeCCCCCcccccccCcccce-------------EEEEeeeeecCCCCceEEEEeC----------CCcEEEEECCCCeE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWI-------------TGISWEPVHLNAPCRRFVSASK----------DGDARIWDVSLRKC 232 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v-------------~~~~~~~~~~~~~~~~~~s~s~----------dg~v~iwd~~~~~~ 232 (500)
-.|.++|+..... +.+..+ ..+.-.|.- ....++.|+. +|.|+-+|.++++.
T Consensus 274 ALDA~TGk~~W~f--g~~G~vdl~~~~g~~~~g~~~~ts~P~V---~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 274 ALDADTGKLCEDF--GNNGTVDLTAGMGTTPPGYYYPTSPPLV---AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred EEECCCCCEEEEe--cCCCceeeecccCcCCCcccccccCCEE---ECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 9999999765321 111111 001111111 1235666643 68899999999998
Q ss_pred EEEec
Q 010816 233 VICLS 237 (500)
Q Consensus 233 ~~~~~ 237 (500)
+-.+.
T Consensus 349 ~W~~~ 353 (764)
T TIGR03074 349 VWAWD 353 (764)
T ss_pred eeEEe
Confidence 87654
No 419
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=85.81 E-value=15 Score=28.86 Aligned_cols=118 Identities=9% Similarity=0.133 Sum_probs=67.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCCCCcccc------cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC
Q 010816 157 AWSADGKHLVSGSKAGELQCWDPQTGKPSGN------PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR 230 (500)
Q Consensus 157 ~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~ 230 (500)
.|.....-|++++.-|+|.|.++........ .+-.-+..|++++-.+.........++.|+ ..++..||+...
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N 83 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENN 83 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccC
Confidence 4544455788888889999998764422111 111223556676655554434444555555 467899999876
Q ss_pred eEEEEecCccccEEEEEeC---C-CCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816 231 KCVICLSGHTLAVTCVKWG---G-DGVIYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~---~-~~~l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
.-++.. .-...|.++.+. . +..++..+.+..|.-||....+...+
T Consensus 84 ~d~Fyk-e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 84 SDLFYK-EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT 132 (136)
T ss_pred chhhhh-hCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence 554322 223456666552 1 23455555567788888655444443
No 420
>PHA03098 kelch-like protein; Provisional
Probab=85.18 E-value=42 Score=34.12 Aligned_cols=51 Identities=14% Similarity=0.176 Sum_probs=26.3
Q ss_pred CCCEEEEEECC--------CcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKD--------STLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d--------~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++.+++.|+.+ ..+.+||..+.+.... ++........+.+ +++.++.||.+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~ 497 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK 497 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence 56666666643 2388899887654321 2111111122223 56666777654
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=84.58 E-value=17 Score=35.20 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=54.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCC---------------C
Q 010816 146 CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAP---------------C 210 (500)
Q Consensus 146 ~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------------~ 210 (500)
+......+.++..+|++.+.|+...=|.|.++|+.++..+. ..+|..+. .+.|........ .
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr-mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR-MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh-hhccCccc--eEEEEEeecccccccccccccCCCCcce
Confidence 44556678999999999888887777999999998876443 34443332 122221111000 0
Q ss_pred -ceEEEEeCCCcEEEEECCCCeEEEEe
Q 010816 211 -RRFVSASKDGDARIWDVSLRKCVICL 236 (500)
Q Consensus 211 -~~~~s~s~dg~v~iwd~~~~~~~~~~ 236 (500)
-.++-+-.-|.|.||+++++..+..+
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~ 406 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAF 406 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEE
Confidence 12344566788999998887665543
No 422
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.11 E-value=36 Score=32.83 Aligned_cols=118 Identities=13% Similarity=0.177 Sum_probs=66.9
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc---cCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
....++|.++.||+|.+.||.--.|++|.+.+....+...... ..-+..|.+..|... ..++.-+. .-+-
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s------~e~A~i~~-~G~e 135 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS------TEIAFITD-QGIE 135 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC------eeEEEEec-CCeE
Confidence 3456799999999999999999999999999874322211111 122345777888642 23333333 2244
Q ss_pred EEECCC-CeEEEEecCccccEEEEEeCCCCe--EE-EEeCCCeEEEEeCCCC
Q 010816 224 IWDVSL-RKCVICLSGHTLAVTCVKWGGDGV--IY-TGSQDCTIKVWETTQG 271 (500)
Q Consensus 224 iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~--l~-t~~~dg~i~lwd~~~~ 271 (500)
+|.+.. ...+...+.|+..|.-..|.++.. ++ ++-..+++.=+.++++
T Consensus 136 ~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 136 FYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 554321 122233345666676666776642 22 2324455554555444
No 423
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.81 E-value=5.7 Score=40.55 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=30.6
Q ss_pred cEEEEEECC----CCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 362 LVNHVYFSP----DGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 362 ~v~~l~~sp----~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
.+..+++++ +..+|++-+.|+++|+||+.+++++.+..-.
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 456667766 6789999999999999999999997765433
No 424
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=81.68 E-value=52 Score=31.75 Aligned_cols=206 Identities=16% Similarity=0.179 Sum_probs=117.4
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe---CCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS---QDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~~~ 287 (500)
.++....+..|.+.|..+.+......--. .-..+++++++ .++.+. .++++.+.|..+++..........+ ..+
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~ 165 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGV 165 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceE
Confidence 56666667899999977666554432111 23456677765 444433 3788999998888877765433333 445
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee---eecccCcEE
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR---MTGHQQLVN 364 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~---~~~h~~~v~ 364 (500)
++.++. ....++-..++++.+.|.......... ...-.....
T Consensus 166 a~~p~g-----------------------------------~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~ 210 (381)
T COG3391 166 AVDPDG-----------------------------------NKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPA 210 (381)
T ss_pred EECCCC-----------------------------------CeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCc
Confidence 554432 112344456788888885432211000 011122345
Q ss_pred EEEECCCCCEEEEEeCC---CcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 365 HVYFSPDGQWVASASFD---KSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 365 ~l~~sp~g~~lasgs~D---g~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
.+.++|+|..+...-.. +.+...|..++..... +..-.. .......+|+
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~---------------------------~~~~v~~~p~ 263 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG---------------------------APRGVAVDPA 263 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC---------------------------CCCceeECCC
Confidence 68899999866554333 5888888887765442 111000 0111245899
Q ss_pred CCEEEEEEC-CCcEEEEECCCccccccccCccc---CEEEEEEcC
Q 010816 441 SRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWSP 481 (500)
Q Consensus 441 ~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s~ 481 (500)
|..+.+... .+.|.+.|..+............ .+..+++.+
T Consensus 264 g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 264 GKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 999888854 48899999888766554433322 244444444
No 425
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.40 E-value=39 Score=32.70 Aligned_cols=149 Identities=18% Similarity=0.224 Sum_probs=59.4
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccC-cEEEEEECCC--CCE-EEEEeCCCcEEEEeC-CCCceEEEEeCCcccEEEEEe
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQ-LVNHVYFSPD--GQW-VASASFDKSIKLWNG-TTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~-~v~~l~~sp~--g~~-lasgs~Dg~i~lwd~-~~~~~~~~~~~h~~~v~~~~~ 410 (500)
..-.++.+||....+..+..-.+.+. ....|.|..+ ..+ ++.+....+|..|-- ..++... ..|-.+.-
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a------~kVi~ip~ 292 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA------EKVIDIPA 292 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE------EEEEEE--
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee------eEEEECCC
Confidence 34468999998765443333333222 3567777643 333 344444555655533 3343211 11111111
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCc---cccccc--------------cC--c
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQ---KLKQDL--------------PG--H 470 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~---~~~~~~--------------~~--h 470 (500)
..+..-..|............++.+..|.|.++|..... +|.||.||+... ++...+ .+ -
T Consensus 293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l 372 (461)
T PF05694_consen 293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL 372 (461)
T ss_dssp EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence 110000001100001111233455567899999998874 899999999752 221110 00 0
Q ss_pred ccCEEEEEEcCCCCEEEEEe
Q 010816 471 ADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~ 490 (500)
.+...-+..|-||++|....
T Consensus 373 ~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 373 RGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp -S----EEE-TTSSEEEEE-
T ss_pred CCCCCeEEEccCCeEEEEEe
Confidence 12335677888999987654
No 426
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.07 E-value=30 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=23.3
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
.+.|+|.|||+++++ ...|.|++++ ..+.
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~ 32 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGS 32 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCc
Confidence 578999999988776 5699999999 4444
No 427
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=79.76 E-value=58 Score=31.10 Aligned_cols=81 Identities=12% Similarity=0.092 Sum_probs=36.1
Q ss_pred cCCCCceEEEEeC-CC--cEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816 206 LNAPCRRFVSASK-DG--DARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQDCTIKVWETTQGKLIRELKGHG 281 (500)
Q Consensus 206 ~~~~~~~~~s~s~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~ 281 (500)
+..++++|+.+|. || .+.+.|+.+++..+...+..........+++ ..++-......++--|+.+.+....+....
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~ 122 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPD 122 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--T
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCc
Confidence 3445656655544 54 5666688887765544332111101122333 344434455677888888877655555555
Q ss_pred ceEEE
Q 010816 282 HWVNS 286 (500)
Q Consensus 282 ~~v~~ 286 (500)
.++..
T Consensus 123 ~~~g~ 127 (386)
T PF14583_consen 123 DWKGY 127 (386)
T ss_dssp TEEEE
T ss_pred ccccc
Confidence 55543
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.40 E-value=7.5 Score=23.10 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCCEEEEEE-CCCcEEEEECCCccccccccC
Q 010816 439 ADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPG 469 (500)
Q Consensus 439 ~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~ 469 (500)
|+++.|+++. .++.|.++|..+++....+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4666666655 578999999988777655443
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=78.25 E-value=12 Score=22.22 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCCCeEEEEe-CCCcEEEEeCCCCceeEEec
Q 010816 118 PDGRQLASGS-GDTTVRLWDLNTQTPMFKCT 147 (500)
Q Consensus 118 p~~~~lat~~-~d~~i~iwd~~~~~~~~~~~ 147 (500)
|++++|.++. .+++|.++|..+.+.+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 5777666655 68899999998877665544
No 430
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=77.79 E-value=6.7 Score=21.84 Aligned_cols=26 Identities=31% Similarity=0.659 Sum_probs=21.7
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816 251 DGVIYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 251 ~~~l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
++.++.++.+|.+..+|..+|+.+..
T Consensus 6 ~~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCCCEEEEEEcccCcEEEE
Confidence 56788899999999999998887654
No 431
>PHA03098 kelch-like protein; Provisional
Probab=77.44 E-value=87 Score=31.85 Aligned_cols=24 Identities=8% Similarity=0.256 Sum_probs=16.7
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCce
Q 010816 371 DGQWVASASFD-----KSIKLWNGTTGKF 394 (500)
Q Consensus 371 ~g~~lasgs~D-----g~i~lwd~~~~~~ 394 (500)
++.+++.|+.+ ..+.+||..+.+.
T Consensus 487 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 487 NNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 67777777764 4678888776654
No 432
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.10 E-value=23 Score=29.69 Aligned_cols=29 Identities=10% Similarity=0.334 Sum_probs=24.1
Q ss_pred ccEEEEEeCCCC-------eEEEEeCCCeEEEEeCC
Q 010816 241 LAVTCVKWGGDG-------VIYTGSQDCTIKVWETT 269 (500)
Q Consensus 241 ~~v~~~~~~~~~-------~l~t~~~dg~i~lwd~~ 269 (500)
..+.+++|+|.| .|++.+.++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 368889999865 58889999999999765
No 433
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.53 E-value=13 Score=21.77 Aligned_cols=30 Identities=27% Similarity=0.351 Sum_probs=19.1
Q ss_pred CCCCCEEEEEEcCCCCEEEEEe-CC--CeEEEE
Q 010816 148 GHKNWVLCIAWSADGKHLVSGS-KA--GELQCW 177 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~-~d--~~i~~w 177 (500)
.....-....|+|||+.|+-++ .+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3455678889999999887554 34 555554
No 434
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.26 E-value=26 Score=34.36 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=22.0
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLW 135 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iw 135 (500)
.|..+..++.|..+|-+|.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 47788899999999999999977665
No 435
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=1.1e+02 Score=33.99 Aligned_cols=34 Identities=3% Similarity=0.035 Sum_probs=29.0
Q ss_pred cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816 358 GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 358 ~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~ 391 (500)
.+.++|..+++...-+.+.+=+..|+|++||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 5567888899988888888889999999999876
No 436
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=75.33 E-value=84 Score=30.63 Aligned_cols=147 Identities=13% Similarity=0.104 Sum_probs=78.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCC--CC-----
Q 010816 120 GRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQT--GK----- 183 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~-----~~~~l~s~~~d~~i~~wd~~~--~~----- 183 (500)
...++.||.+|.++||+..... .+.--..-..+|..+..-. +...||. =--.++.+|.+.. |.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCc
Confidence 4589999999999999975432 1221223457888776532 1223433 3456778887632 11
Q ss_pred c-ccccccCcccce--EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC
Q 010816 184 P-SGNPLSGHKKWI--TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ 259 (500)
Q Consensus 184 ~-~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~ 259 (500)
. .-.....|.-.- .++..-|+.-......+..-+.||.+.+++-+.......+.+.- --..+.|.+ ...+++++.
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-lPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFL-LPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCC-CCcCeEEeecCCEEEEecC
Confidence 0 001122233222 22333343322223567788999999999876544333332211 111233433 246777777
Q ss_pred CCeEEEEeC
Q 010816 260 DCTIKVWET 268 (500)
Q Consensus 260 dg~i~lwd~ 268 (500)
+..+.-|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 777776653
No 437
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.78 E-value=91 Score=30.77 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=24.8
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
..+.|+|.|||++|++--..|.|++++..++
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 4578999999998887655799999986554
No 438
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.57 E-value=9.5 Score=40.93 Aligned_cols=62 Identities=19% Similarity=0.279 Sum_probs=41.0
Q ss_pred EEcCCC-CEEEEEECCCcEEEEECCCccc-cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 436 SWSADS-RLLLSGSKDSTLKVWDIRTQKL-KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 436 ~~s~~~-~~l~s~s~d~~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.|.|.- ...|....|+.|++..+..... ...++ -...+++++|+|.|+.++.|-..|++.-|
T Consensus 162 ~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy 225 (1405)
T KOG3630|consen 162 VWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQY 225 (1405)
T ss_pred cccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEe
Confidence 355543 2345566788888876643222 22222 23467999999999999999998887644
No 439
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.75 E-value=91 Score=30.30 Aligned_cols=103 Identities=10% Similarity=0.167 Sum_probs=61.0
Q ss_pred ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE----EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816 357 TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV----AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (500)
....+.|.++.||+|.+.||.--.|.+|.+++....+.. ...+..+..|..
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlG------------------------- 117 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILG------------------------- 117 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEE-------------------------
Confidence 334568999999999999999999999999987432211 111111111222
Q ss_pred eeeEEcCCCCEEEEEECCCcEEEEECCC-ccccccccCcccCEEEEEEcCCCCEEEE
Q 010816 433 SLYSWSADSRLLLSGSKDSTLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 433 ~~~~~s~~~~~l~s~s~d~~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~s 488 (500)
+.|+.+ .-+|.-+..| +.+|.... .+.++....|+..|.-..|.++.+.+.-
T Consensus 118 --F~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL 170 (657)
T KOG2377|consen 118 --FCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILL 170 (657)
T ss_pred --EEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEee
Confidence 245444 3444444443 56665433 2223444567777888888887665433
No 440
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.93 E-value=91 Score=29.90 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCeEEEEe-----------CCC-cEEEEeCCC--Cce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 111 VLSVAFSPDGRQLASGS-----------GDT-TVRLWDLNT--QTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~-----------~d~-~i~iwd~~~--~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
...|+|.++|+++++-. ..+ .|.+++-.+ +.. ...+...-.....+++.++| +++ ++.+...
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~i~ 93 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPDIL 93 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCeEE
Confidence 45789999999877643 223 677775432 221 12222223345778888888 444 4444433
Q ss_pred EEEeC
Q 010816 175 QCWDP 179 (500)
Q Consensus 175 ~~wd~ 179 (500)
++.|.
T Consensus 94 ~~~d~ 98 (367)
T TIGR02604 94 FLRDK 98 (367)
T ss_pred EEeCC
Confidence 44454
No 441
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=71.77 E-value=24 Score=36.57 Aligned_cols=61 Identities=16% Similarity=0.206 Sum_probs=39.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCc--ccc-ccccCcccCEEEEEEcCCC---C---EEEEEeCCCcEEEec
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQ--KLK-QDLPGHADEVFAVDWSPDG---E---KVASGGKDRVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~--~~~-~~~~~h~~~V~~l~~s~dg---~---~l~s~~~D~~v~iW~ 499 (500)
...+++|+++....|.||-.... +.. ..-..|..-|.+|+|-++. . ++++++-.|.+.+|+
T Consensus 175 ~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 175 KKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred CcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 56778888888888888754331 111 1111244457888886653 2 788999999988875
No 442
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=70.10 E-value=1.3e+02 Score=30.46 Aligned_cols=117 Identities=16% Similarity=0.205 Sum_probs=65.0
Q ss_pred CCcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCC-----CCceeEEecCC---CCCE--EEEEEcCCCCEEEEEeCC
Q 010816 106 GHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLN-----TQTPMFKCTGH---KNWV--LCIAWSADGKHLVSGSKA 171 (500)
Q Consensus 106 gh~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~-----~~~~~~~~~~h---~~~v--~~v~~s~~~~~l~s~~~d 171 (500)
|.-+-|..+.|.|- ...|.+......|.||.+. ..+.+..-..+ .-+| ..+-|+|....|+.-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 34456889999985 3355566778899999874 22222211111 1111 245688988877665444
Q ss_pred CeEEEEeCCCCC-cccccccCcccceEEEEeeeeecCCCCceEEE-EeCCCcEEEEECC
Q 010816 172 GELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVS-ASKDGDARIWDVS 228 (500)
Q Consensus 172 ~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s-~s~dg~v~iwd~~ 228 (500)
..=.+.++.... .++.-+ ...+.|.+.+|.+ ++.+++. .+..=.-+|||-.
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~-----DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK-----DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecC-----cCCEEEEEeCCeEEEEEecCc
Confidence 333344443221 111112 3356788999976 4445544 4555567899864
No 443
>PHA02790 Kelch-like protein; Provisional
Probab=69.89 E-value=1.3e+02 Score=30.26 Aligned_cols=21 Identities=0% Similarity=0.161 Sum_probs=13.4
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
+|...+.|+ .+.+||..+.+.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~W 427 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNTW 427 (480)
T ss_pred CCEEEEECC---ceEEecCCCCcE
Confidence 566666663 467788776654
No 444
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=69.81 E-value=15 Score=21.50 Aligned_cols=27 Identities=19% Similarity=0.464 Sum_probs=22.8
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
.++.++.||.+.-.|..+|+.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 567779999999999999998877653
No 445
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=69.36 E-value=45 Score=27.85 Aligned_cols=34 Identities=12% Similarity=0.316 Sum_probs=25.8
Q ss_pred ceEEEEeeeeecCCC-CceEEEEeCCCcEEEEECC
Q 010816 195 WITGISWEPVHLNAP-CRRFVSASKDGDARIWDVS 228 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~-~~~~~s~s~dg~v~iwd~~ 228 (500)
.+.+++|+|...... ...|++-..++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 688999999765443 3467788899999998754
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.34 E-value=9.1 Score=41.06 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=62.1
Q ss_pred ccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC--Ccc
Q 010816 109 EAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG--KPS 185 (500)
Q Consensus 109 ~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~--~~~ 185 (500)
....++.|+|.-. ..|....|+.|++..+....+...--.-...++|++|+|.|+.++.|-..|++.-|.+.-. +.+
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~i 235 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEI 235 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecc
Confidence 3456778888643 4556667888888766533222111124567899999999999999999999999976432 111
Q ss_pred cccccCcccceEEEEeee
Q 010816 186 GNPLSGHKKWITGISWEP 203 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~ 203 (500)
..+-......|.++.|..
T Consensus 236 p~Pp~~e~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLS 253 (1405)
T ss_pred cCCCcCCCcceeEEEEec
Confidence 111112257788999864
No 447
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=69.20 E-value=1.2e+02 Score=29.67 Aligned_cols=153 Identities=16% Similarity=0.258 Sum_probs=79.8
Q ss_pred CcEEEEeeCCCeEEEEcCCCCC-CCcee--eecccCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 329 PERLVSGSDDFTMFLWEPAVSK-QPKTR--MTGHQQLVNHVYFSP-----DGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~-~~~~~--~~~h~~~v~~l~~sp-----~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
.+.++.||..|.++|+++.... .+... ...-..+|..+.... +...||. =.-+.+.+|.+... .+
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~------~g 109 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLV------DG 109 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEec------CC
Confidence 4689999999999999985433 11111 123346677776532 2233433 45566677765210 11
Q ss_pred C--cccEEEEEeeeeeeecCCCCceeeeeccccceeeEE-cCC-CCEEEEEECCCcEEEEECCCccccccccCcccCEEE
Q 010816 401 H--VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW-SAD-SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA 476 (500)
Q Consensus 401 h--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~ 476 (500)
+ .+.-+.+ +..+....+...+.+. .-.| ... -.++..=+.||.+.+|+-+.......+++. ---.-
T Consensus 110 ~~~~g~~~~L--~~~yeh~l~~~a~nm~-------~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-llPgP 179 (418)
T PF14727_consen 110 TVEHGNQYQL--ELIYEHSLQRTAYNMC-------CGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDF-LLPGP 179 (418)
T ss_pred CcccCcEEEE--EEEEEEecccceeEEE-------EEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCC-CCCcC
Confidence 1 0111111 1111111111111110 0011 112 457888899999999997765544444441 11123
Q ss_pred EEEcCCCCEEEEEeCCCcEEEe
Q 010816 477 VDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 477 l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+.+.+.-..|++++.+..+.-+
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Y 201 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECY 201 (418)
T ss_pred eEEeecCCEEEEecCceeEEEe
Confidence 5677777788888887776654
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=68.86 E-value=12 Score=38.27 Aligned_cols=39 Identities=31% Similarity=0.377 Sum_probs=29.4
Q ss_pred ccEEEEEEcC----CCCeEEEEeCCCcEEEEeCCCCceeEEec
Q 010816 109 EAVLSVAFSP----DGRQLASGSGDTTVRLWDLNTQTPMFKCT 147 (500)
Q Consensus 109 ~~V~~~~~sp----~~~~lat~~~d~~i~iwd~~~~~~~~~~~ 147 (500)
..+..+++++ +..+|++-+.|+++|+||+.++.++....
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence 4566677777 77899999999999999999998866543
No 449
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=68.40 E-value=1.2e+02 Score=29.63 Aligned_cols=16 Identities=19% Similarity=0.136 Sum_probs=10.5
Q ss_pred EEEEeCCCeEEEEeCC
Q 010816 254 IYTGSQDCTIKVWETT 269 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~ 269 (500)
.+....|..+.+|+..
T Consensus 39 ~Aw~~~d~~l~vW~Y~ 54 (422)
T PF08801_consen 39 RAWIVVDNRLYVWNYS 54 (422)
T ss_dssp EEEEEETTEEEEEE--
T ss_pred EEEEEECCEEEEEecc
Confidence 3445667899999974
No 450
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.62 E-value=73 Score=29.13 Aligned_cols=92 Identities=22% Similarity=0.402 Sum_probs=51.8
Q ss_pred CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE------CCCcEEE
Q 010816 382 KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS------KDSTLKV 455 (500)
Q Consensus 382 g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s------~d~~v~i 455 (500)
..|.+||..+.+......+-.+.|..+. |..+.+++++|. ....+-.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~---------------------------~~~~~~Llv~G~ft~~~~~~~~la~ 68 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQ---------------------------WASNNQLLVGGNFTLNGTNSSNLAT 68 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEE---------------------------EecCCEEEEEEeeEECCCCceeEEE
Confidence 3588999887766554444455666663 444556666665 3456778
Q ss_pred EECCCccccccccC----cccCEEEEEEc-CCCCEEE-EEe---CCCcEEEecC
Q 010816 456 WDIRTQKLKQDLPG----HADEVFAVDWS-PDGEKVA-SGG---KDRVLKLWMG 500 (500)
Q Consensus 456 wd~~~~~~~~~~~~----h~~~V~~l~~s-~dg~~l~-s~~---~D~~v~iW~~ 500 (500)
||..+......-.+ -.++|..+.+. .|+..+. .|. .+..|..|++
T Consensus 69 yd~~~~~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 69 YDFKNQTWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred EecCCCeeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 99887665322111 23567777663 3444343 332 2335666664
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=66.97 E-value=25 Score=30.30 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=33.9
Q ss_pred CeEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCEEEEEEcCCCCEEEEE
Q 010816 121 RQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSG 168 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~ 168 (500)
+.|+.+...+.|.+|++.+. +++..+.. -+.|..+.++..|++|+|-
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEE
Confidence 44545466778999999843 33444433 3789999999999999984
No 452
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=66.77 E-value=69 Score=31.11 Aligned_cols=33 Identities=9% Similarity=0.319 Sum_probs=20.9
Q ss_pred cCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCC
Q 010816 360 QQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTG 392 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~ 392 (500)
...|+.+.+|.|.++|..+.. +|.||.||+..-
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 355889999999999987776 899999999864
No 453
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=66.58 E-value=1.7e+02 Score=30.84 Aligned_cols=148 Identities=18% Similarity=0.239 Sum_probs=72.9
Q ss_pred EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC----------------CceEEEEeCCcccEE
Q 010816 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT----------------GKFVAVFRGHVGPVY 406 (500)
Q Consensus 343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~----------------~~~~~~~~~h~~~v~ 406 (500)
..|+.....+...+..-.+.|...+||.|.+.++....++.|-+++-.- ++.+.+-=|.. -+
T Consensus 95 ~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkk--et 172 (1243)
T COG5290 95 VNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKK--ET 172 (1243)
T ss_pred EcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeeccc--ch
Confidence 3444322233333334456788899999999888888888888876210 11111100000 00
Q ss_pred EEEeeee-eeecCCCCce-----eeeeccccceeeEEcCCCCEEEEEECC----CcEEEEECCCccccccccCcccCEEE
Q 010816 407 QIRFELI-YCFRYPSNFY-----CVVDMSCCMSLYSWSADSRLLLSGSKD----STLKVWDIRTQKLKQDLPGHADEVFA 476 (500)
Q Consensus 407 ~~~~~~~-~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~l~s~s~d----~~v~iwd~~~~~~~~~~~~h~~~V~~ 476 (500)
+.+-... ...+.|+.-+ .+.........+.|..|.++.+.+..+ ..+|+|..+ |++-..-..-.+.-..
T Consensus 173 qfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~ 251 (1243)
T COG5290 173 QFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQ 251 (1243)
T ss_pred hccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhc
Confidence 0000000 0111221111 112222334455677788888777654 246677532 2211110111222245
Q ss_pred EEEcCCCCEEEEEeCCC
Q 010816 477 VDWSPDGEKVASGGKDR 493 (500)
Q Consensus 477 l~~s~dg~~l~s~~~D~ 493 (500)
++|-|+|..++|-+.||
T Consensus 252 LSWkpqgS~~ati~td~ 268 (1243)
T COG5290 252 LSWKPQGSKYATIGTDG 268 (1243)
T ss_pred cccccCCceeeeeccCC
Confidence 89999999999988665
No 454
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=66.51 E-value=1.3e+02 Score=29.20 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=76.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc----
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS---- 185 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~---- 185 (500)
...+..++++.+++.+..-...+-||-.... .... ..-...+..+.|.+++..++++ .+|.+. |....++..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~-~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHN-RASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEec-CCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCcccccc
Confidence 4455677888777766443333344432110 1111 1234568899999998877665 455543 333333211
Q ss_pred ccccc--CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEEeCC
Q 010816 186 GNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQD 260 (500)
Q Consensus 186 ~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~d 260 (500)
..... .....+.++.+.+ .+.++.++..|.+.... ..++.-.... +-......+.|.+++..+..+.+
T Consensus 318 f~~~~~~~~~~~l~~v~~~~------d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~ 390 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRS------KKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGND 390 (398)
T ss_pred eeecccCCCCcceEEEEEcC------CCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCC
Confidence 00011 0112355565542 23466677778766653 2232211111 12345678888877777888888
Q ss_pred CeEEEE
Q 010816 261 CTIKVW 266 (500)
Q Consensus 261 g~i~lw 266 (500)
|.|--|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 887554
No 455
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=64.21 E-value=1e+02 Score=27.13 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=35.8
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEe
Q 010816 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRF 410 (500)
Q Consensus 366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~ 410 (500)
+++..+|++.++.-..++|...|+.+|+.+..++-....+++..|
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 455668888888888899999999999999888766666666544
No 456
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=63.76 E-value=1.1e+02 Score=27.50 Aligned_cols=156 Identities=19% Similarity=0.159 Sum_probs=83.1
Q ss_pred EEEEEEcCCCCeEEEEeCCC--cEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 111 VLSVAFSPDGRQLASGSGDT--TVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~--~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
...+.|..+|.++-+.+.-| .|+.+|+.+++.+....-.. ----.++.. +++...-.-.++...+||..+-+....
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEE
Confidence 44678878888888887655 79999999987654332111 111122222 223333345678899999887654332
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc--cc---cEEEEEeCCCCeEEE-EeCCC
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--TL---AVTCVKWGGDGVIYT-GSQDC 261 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h--~~---~v~~~~~~~~~~l~t-~~~dg 261 (500)
.-....++ +++ .++..++.+.....++.+|..+.+....+.-. .. .+.-+.|. +|.|++ .-...
T Consensus 126 ~~y~~EGW--GLt-------~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 126 FPYPGEGW--GLT-------SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EE-SSS----EEE-------ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSS
T ss_pred EecCCcce--EEE-------cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCC
Confidence 11111221 222 23456666666678999998877655443321 12 23445554 455554 33445
Q ss_pred eEEEEeCCCCeeEEEe
Q 010816 262 TIKVWETTQGKLIREL 277 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~ 277 (500)
.|..-|..+|+....+
T Consensus 196 ~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWI 211 (264)
T ss_dssp EEEEEETTT-BEEEEE
T ss_pred eEEEEeCCCCeEEEEE
Confidence 5666677777765543
No 457
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=63.66 E-value=21 Score=19.16 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=16.2
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
...++++++|+++++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777777766666666553
No 458
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.87 E-value=1.4e+02 Score=28.18 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=37.2
Q ss_pred CCCEEEEEECCCcEEEEECCCcccc----ccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 440 DSRLLLSGSKDSTLKVWDIRTQKLK----QDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 440 ~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
.|.+|++.-..+.|....+...... ..+.....++..+++.|||...++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4556666655667777776533211 12334445799999999999999989899885
No 459
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=62.52 E-value=24 Score=20.60 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 375 VASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 375 lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
+..++.||.|+-.|.++|+.+-.++
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4556899999999999999876554
No 460
>PHA02790 Kelch-like protein; Provisional
Probab=60.98 E-value=1.9e+02 Score=29.06 Aligned_cols=104 Identities=9% Similarity=-0.043 Sum_probs=48.7
Q ss_pred CCCeEEEEeCCC-----cEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC--CeEEEEeCCCCCcccc-c
Q 010816 119 DGRQLASGSGDT-----TVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA--GELQCWDPQTGKPSGN-P 188 (500)
Q Consensus 119 ~~~~lat~~~d~-----~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d--~~i~~wd~~~~~~~~~-~ 188 (500)
++..++.||.++ ++..||..+..-.. .+.........+. -++...+.|+.+ ..+..||+.+++.... +
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 455567776543 46678876543211 1111111111222 366666777754 3577888765432111 1
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCC---cEEEEECCCCe
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRK 231 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~ 231 (500)
+.........+. .++..++.||.++ .+..||.++.+
T Consensus 349 l~~~r~~~~~~~-------~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 349 LLKPRCNPAVAS-------INNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred CCCCCcccEEEE-------ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 111111111111 1345677777653 46678876543
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.35 E-value=2.2e+02 Score=29.76 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=25.1
Q ss_pred ceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 432 ~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
....+.||+.++|+-=..+|.|.+-+....+...
T Consensus 219 ~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 219 VVKISVSPNRRFLALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred EEEEEEcCCcceEEEEecCCcEEEEecchhhhhh
Confidence 3445678999999988889988888776655443
No 462
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=59.09 E-value=1.1e+02 Score=31.66 Aligned_cols=69 Identities=14% Similarity=0.311 Sum_probs=44.6
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
....+++++-+|.|+-++.+..||+|++|++...+....+. -..+-..+.|...| |+++..|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-EAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-hcCCccceeeeccc--eEEEeccchhheee
Confidence 35567889999999999999999999999986544321111 11222334454433 55555666666664
No 463
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=58.68 E-value=1.4e+02 Score=27.98 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=59.6
Q ss_pred EEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 363 VNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~D------g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
..+|++.++|.++++.-.+ ..|+.++.. |+.+..+.-...-. ....-..-.........++
T Consensus 87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~------------~~~~~~~~~~~N~G~E~la 153 (326)
T PF13449_consen 87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFL------------PDANGTSGRRNNRGFEGLA 153 (326)
T ss_pred hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccc------------cccCccccccCCCCeEEEE
Confidence 4466777788888877777 788888866 66554432110000 0000000111223344567
Q ss_pred EcCCCCEEEEEEC-----CC--c-------EEEE--ECCC-c----cccccccC-----cccCEEEEEEcCCCCEEEE
Q 010816 437 WSADSRLLLSGSK-----DS--T-------LKVW--DIRT-Q----KLKQDLPG-----HADEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 437 ~s~~~~~l~s~s~-----d~--~-------v~iw--d~~~-~----~~~~~~~~-----h~~~V~~l~~s~dg~~l~s 488 (500)
++|+|+.|.++.. |+ . ++|+ |..+ + +....+.. ....|..+.+-++++.|+-
T Consensus 154 ~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 154 VSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred ECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 8999996555432 22 1 4554 4443 2 12223332 3456888888898887653
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=58.42 E-value=33 Score=29.61 Aligned_cols=52 Identities=13% Similarity=0.255 Sum_probs=36.9
Q ss_pred CCC-CEEEEEECCCcEEEEECCC--ccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 439 ADS-RLLLSGSKDSTLKVWDIRT--QKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 439 ~~~-~~l~s~s~d~~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
..| +.|..+.....|.+|++.. .+.+..++- -+.|..+.++..|++|+|-=.
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEe
Confidence 344 5555556667899999883 344455543 378999999999999998633
No 465
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=57.81 E-value=8 Score=37.43 Aligned_cols=60 Identities=15% Similarity=0.206 Sum_probs=49.1
Q ss_pred eEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
+.|++.+..++.+-..+.+.||+..+.+.......|.+++.+++|.+.+ +.+.++.|.++
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L 182 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTL 182 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHH
Confidence 4789999999999999999999988877766665599999999999975 56777776543
No 466
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.78 E-value=2e+02 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=28.4
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~ 290 (500)
+..+-|+.+.+|+..++.....+.+-.+.|..+.+-
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~Lv 128 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLV 128 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCccccccchhhhheeeeee
Confidence 345778999999999988888887777777777643
No 467
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=57.34 E-value=1.5e+02 Score=26.78 Aligned_cols=116 Identities=12% Similarity=0.122 Sum_probs=59.8
Q ss_pred EEEEeCCCCeEE-EEeCCC--eEEEEeCCCCeeEEEeecCCc-eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 244 TCVKWGGDGVIY-TGSQDC--TIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 244 ~~~~~~~~~~l~-t~~~dg--~i~lwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
..+.|..++.|+ +.+.-| .|+.+|+.+|+..+...-... .-..++...
T Consensus 48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~---------------------------- 99 (264)
T PF05096_consen 48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG---------------------------- 99 (264)
T ss_dssp EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET----------------------------
T ss_pred ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC----------------------------
Confidence 446664555544 555544 789999999987765432211 111111111
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
.....-.-.++..++||...-+. ...+. ....=+.++ .||..|+.+.....++.+|..+.+....+.
T Consensus 100 ---------d~l~qLTWk~~~~f~yd~~tl~~-~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 100 ---------DKLYQLTWKEGTGFVYDPNTLKK-IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp ---------TEEEEEESSSSEEEEEETTTTEE-EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred ---------CEEEEEEecCCeEEEEccccceE-EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 11223344677888888653221 11111 122234455 466667766667789999998877766554
Q ss_pred C
Q 010816 400 G 400 (500)
Q Consensus 400 ~ 400 (500)
.
T Consensus 167 V 167 (264)
T PF05096_consen 167 V 167 (264)
T ss_dssp -
T ss_pred E
Confidence 3
No 468
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=57.09 E-value=1.4e+02 Score=26.56 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=22.3
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCcccccccc
Q 010816 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 468 (500)
..|+|++++.+..+. .|||..+.+.++.++
T Consensus 177 llPdG~lFi~an~~s--~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 177 LLPDGNLFIFANRGS--IIYDYKTNTVVRTLP 206 (243)
T ss_pred EcCCCCEEEEEcCCc--EEEeCCCCeEEeeCC
Confidence 479999999998765 677888776655443
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=55.55 E-value=1.7e+02 Score=26.99 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=43.2
Q ss_pred EeeCCCeEEEEcCCCCCCCceee--ecccCcEEEEEECC------CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRM--TGHQQLVNHVYFSP------DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~--~~h~~~v~~l~~sp------~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~ 403 (500)
.|..-|.|-++|..- ....++ .+.-..-+.|+..| .|.+|+----||+|..||..+|+.+..++...+
T Consensus 217 ~G~G~G~VdvFd~~G--~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 217 AGAGLGYVNVFTLNG--QLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred cCCCcceEEEEcCCC--cEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCC
Confidence 444556777887542 222222 12223345566644 567777766799999999999998888776443
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=54.59 E-value=32 Score=35.35 Aligned_cols=60 Identities=8% Similarity=0.171 Sum_probs=38.2
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.-+|.|+-++.++.||.|++|+....+..+.+.. ..+-..+.|... -|+++..|.++.-|
T Consensus 21 qshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-~~p~~nlv~tnh--gl~~~tsdrr~la~ 80 (1636)
T KOG3616|consen 21 QSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-AKPKENLVFTNH--GLVTATSDRRALAW 80 (1636)
T ss_pred eecCCCceEEEEecCCcEEEEeecccchhhhhhh-cCCccceeeecc--ceEEEeccchhhee
Confidence 3469999999999999999999765443222211 122234555543 36677777666555
No 471
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=52.73 E-value=2.9e+02 Score=28.77 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=28.2
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDL 137 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~ 137 (500)
.+.|..+.|.++++.++..-.+|.|.+||.
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~ 158 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDF 158 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEec
Confidence 568999999999999999999999999998
No 472
>PRK13615 lipoprotein LpqB; Provisional
Probab=51.91 E-value=2.3e+02 Score=28.92 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=22.2
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 364 NHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 364 ~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
.+++.++++..+|....++.++++...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~ 363 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD 363 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC
Confidence 678999999999988778878777654
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=50.93 E-value=2.2e+02 Score=26.78 Aligned_cols=55 Identities=15% Similarity=0.314 Sum_probs=37.9
Q ss_pred EEcCCCCEEEEEECC------CcEEEEECCCccccccc--c-------------CcccCEEEEEEcCCCCEEEEEeC
Q 010816 436 SWSADSRLLLSGSKD------STLKVWDIRTQKLKQDL--P-------------GHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d------~~v~iwd~~~~~~~~~~--~-------------~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
++.++|.++++.-.+ ..|+.++.. ++....+ + ..+...-+++++|||+.|.++-.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 456788888887777 788888866 4443222 1 13456789999999997776644
No 474
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=46.79 E-value=2.3e+02 Score=25.94 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=56.7
Q ss_pred CcccEEEEEEcCCCCeEEEEe------CCCcEEEEeCCCCceeEEecC-----CCCCEEEEEEcC-CCC-EEEEEe-C--
Q 010816 107 HTEAVLSVAFSPDGRQLASGS------GDTTVRLWDLNTQTPMFKCTG-----HKNWVLCIAWSA-DGK-HLVSGS-K-- 170 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~------~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~-~~~-~l~s~~-~-- 170 (500)
-.+.|.++.|..+.++++.|. ....+..||..+..- ..+.+ -.++|..+.+.. |+. ..+.|. .
T Consensus 35 i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g 113 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANG 113 (281)
T ss_pred ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCcEEEEEeeccCCceEEEeceecCC
Confidence 467899999998888888774 355688999877642 12222 246788888753 333 444433 2
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeee
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPV 204 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~ 204 (500)
+..|..||-.+-.............|.++.+-|.
T Consensus 114 ~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 114 STFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred CceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 3357777643322222212223456677766665
No 475
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=46.30 E-value=2.7e+02 Score=26.60 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=65.4
Q ss_pred EEEEEeCCCeEEEEeCCCCCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-c
Q 010816 164 HLVSGSKAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-L 241 (500)
Q Consensus 164 ~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~ 241 (500)
.+..+..||.|...|..+++..-. ........+. .|... ...++..++.++.+..+|.++++.+....... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~----~~~~~--~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS----GPILG--SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSP 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceecc----CceEE--eCCeEEEecccceEEEEECCCCcEEEEEecCCCe
Confidence 455557888888888888764311 1111001111 11111 12468889999989999998888777665554 1
Q ss_pred cEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee
Q 010816 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 242 ~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~ 278 (500)
.+.......++.++.++.++.+.-.|..+|+......
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEe
Confidence 1222223345667777678888888888887765543
No 476
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=44.17 E-value=42 Score=19.71 Aligned_cols=21 Identities=19% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 010816 371 DGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~ 391 (500)
.+..+..++.||.++.+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788889999999998753
No 477
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=43.18 E-value=1.2e+02 Score=21.91 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=22.7
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCcEEEEeCC
Q 010816 361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGT 390 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~ 390 (500)
...+.+.++|++++|..++ ..+.|++|...
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4467899999998886654 56889988754
No 478
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=42.63 E-value=1.4e+02 Score=27.66 Aligned_cols=69 Identities=23% Similarity=0.358 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCE-----EEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWV-----LCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v-----~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
|.+|...++|.+|+|+-.-.+|.+.|-.+++.+..+.|....= ...+|-.|-+.+-....++.|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 7788888999999999888899999988988888876652211 11333334444444566788888875
No 479
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=42.47 E-value=3.1e+02 Score=26.19 Aligned_cols=70 Identities=19% Similarity=0.231 Sum_probs=43.2
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCc--cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCC
Q 010816 212 RFVSASKDGDARIWDVSLRKCVICLSGH--TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG 281 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~ 281 (500)
++..+..+|.+.-.|..+++.+.....- ...+..-....+|.++.++.++.+..+|..+|+.+.......
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~ 141 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGG 141 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCC
Confidence 4455566776766676666543221111 112222222337889999999988889988898877665544
No 480
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=41.50 E-value=59 Score=17.55 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=19.9
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 473 EVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 473 ~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.|.+++-++ .+++.+..-+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 577777765 5889998889999973
No 481
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=39.79 E-value=3.7e+02 Score=26.20 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=35.1
Q ss_pred EEcCCCCEEEEEECCCcEEEEECCCcccccc--ccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 436 SWSADSRLLLSGSKDSTLKVWDIRTQKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.+.+++..++ ++..|.+....-........ -..-....+.+.|.++++ ....|.+|.|.-|.+
T Consensus 334 ~~~~d~~~~a-~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~~~ 398 (398)
T PLN00033 334 GYRSKKEAWA-AGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRYLG 398 (398)
T ss_pred EEcCCCcEEE-EECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEeCC
Confidence 4556666554 55667666553222221111 122235688999977755 455666788877754
No 482
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.53 E-value=5.8e+02 Score=28.47 Aligned_cols=29 Identities=21% Similarity=0.403 Sum_probs=24.9
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCC
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLN 138 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~ 138 (500)
.-..++|+|.-.++|.|..+|.|++|-..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEeccc
Confidence 34568999999999999999999999654
No 483
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.62 E-value=3.3e+02 Score=25.28 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.8
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
+++|...++|.+|+|.-.-..|.+.|.++|+.+-.+.|.
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 778888899999999988899999999999998888765
No 484
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=38.02 E-value=1.7e+02 Score=26.98 Aligned_cols=64 Identities=11% Similarity=0.147 Sum_probs=43.0
Q ss_pred EEcCCCCEEEEEECCCcEEEEECC-------CccccccccC-----cccCEEEEEEcCCCC------------EEEEEeC
Q 010816 436 SWSADSRLLLSGSKDSTLKVWDIR-------TQKLKQDLPG-----HADEVFAVDWSPDGE------------KVASGGK 491 (500)
Q Consensus 436 ~~s~~~~~l~s~s~d~~v~iwd~~-------~~~~~~~~~~-----h~~~V~~l~~s~dg~------------~l~s~~~ 491 (500)
+++|.+.+-++....+...+||.. ...+.-.+++ .....+.+.|+.... .++.+++
T Consensus 29 a~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tE 108 (336)
T TIGR03118 29 SYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVTE 108 (336)
T ss_pred EecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEeC
Confidence 678888888888888899999986 1223333332 123456677764322 3678899
Q ss_pred CCcEEEec
Q 010816 492 DRVLKLWM 499 (500)
Q Consensus 492 D~~v~iW~ 499 (500)
||+|.=|.
T Consensus 109 dGTisaW~ 116 (336)
T TIGR03118 109 DGTLSGWA 116 (336)
T ss_pred CceEEeec
Confidence 99998885
No 485
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=36.97 E-value=1.4e+02 Score=31.56 Aligned_cols=135 Identities=15% Similarity=0.173 Sum_probs=75.0
Q ss_pred eEEEEeCCCcEEEEeCCC--Ccee-EE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEE--------EeCCCCCcccccc
Q 010816 122 QLASGSGDTTVRLWDLNT--QTPM-FK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQC--------WDPQTGKPSGNPL 189 (500)
Q Consensus 122 ~lat~~~d~~i~iwd~~~--~~~~-~~-~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~--------wd~~~~~~~~~~~ 189 (500)
.+..|+.++.|.|+.-.. ++.. .. ...-...+.++.+++. -+..|.-||++-. ||.+-.+. +
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~----~ 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNIS----I 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccc----c
Confidence 466788889999987652 1111 11 1122345666666553 2344444555544 43321110 0
Q ss_pred cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEEEEEeCCCCeEEEEeCCCeEEEE
Q 010816 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~dg~i~lw 266 (500)
..-..+|.+..+ ..-++.++.+|.|.++...+......+. .|...|+++.+..++..++=.....++++
T Consensus 623 ~~g~lPvrsla~--------~ed~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlf 694 (925)
T KOG3522|consen 623 PTGSLPVRSLAF--------QEDFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLF 694 (925)
T ss_pred ccCCccccchhh--------hhceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEe
Confidence 111122222222 2347788999999999987755444333 35568999999888876555555567777
Q ss_pred eCCC
Q 010816 267 ETTQ 270 (500)
Q Consensus 267 d~~~ 270 (500)
+..+
T Consensus 695 htet 698 (925)
T KOG3522|consen 695 HTET 698 (925)
T ss_pred cccc
Confidence 6544
No 486
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=36.75 E-value=2.2e+02 Score=22.69 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=51.4
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCc--------eeEEecCCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEeCC
Q 010816 114 VAFSPDGRQLASGSGDTTVRLWDLNTQT--------PMFKCTGHKNWVLCIAWSA-----DGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~--------~~~~~~~h~~~v~~v~~s~-----~~~~l~s~~~d~~i~~wd~~ 180 (500)
-+|.....-|+.++.-|.|.|++..... .+..+ .-.+.|++++-.+ +.+.|+.|+ ...+..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 3565666678888888899999875432 22222 2456677775433 234566655 5689999998
Q ss_pred CCCcccccccCcccceEEEEee
Q 010816 181 TGKPSGNPLSGHKKWITGISWE 202 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~ 202 (500)
...... .+.-.+.|+++.+-
T Consensus 82 ~N~d~F--yke~~DGvn~i~~g 101 (136)
T PF14781_consen 82 NNSDLF--YKEVPDGVNAIVIG 101 (136)
T ss_pred cCchhh--hhhCccceeEEEEE
Confidence 765432 22334556666554
No 487
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=2.9e+02 Score=24.02 Aligned_cols=68 Identities=24% Similarity=0.172 Sum_probs=34.2
Q ss_pred CCCeEEEEeC--CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCccc
Q 010816 119 DGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 119 ~~~~lat~~~--d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~ 186 (500)
+|.++.+.+. ...|++||+.+++.+...+-....+..=....-|+.+. -.-.+|.-..+|..+-++..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 4556666654 34699999998877654321111110000000122222 22346777788877655443
No 488
>PRK10115 protease 2; Provisional
Probab=35.42 E-value=5.7e+02 Score=27.14 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=42.8
Q ss_pred CEEEEEEcCCCCEEEEEeC-C----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC------C
Q 010816 152 WVLCIAWSADGKHLVSGSK-A----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD------G 220 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~-d----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d------g 220 (500)
.+..+.|+|||++|+-+.. + ..|++-|+.+|......+.+-. ..+.|.+. ++.|+-...+ .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~---~~~~w~~D-----~~~~~y~~~~~~~~~~~ 199 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE---PSFVWAND-----SWTFYYVRKHPVTLLPY 199 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc---eEEEEeeC-----CCEEEEEEecCCCCCCC
Confidence 3667889999998875432 2 3588889988864333333222 45788652 2334333222 3
Q ss_pred cEEEEECCCC
Q 010816 221 DARIWDVSLR 230 (500)
Q Consensus 221 ~v~iwd~~~~ 230 (500)
.|+.+++.++
T Consensus 200 ~v~~h~lgt~ 209 (686)
T PRK10115 200 QVWRHTIGTP 209 (686)
T ss_pred EEEEEECCCC
Confidence 6777788776
No 489
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=34.68 E-value=1e+02 Score=22.41 Aligned_cols=51 Identities=29% Similarity=0.375 Sum_probs=30.1
Q ss_pred EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEE--eCCCcEEEe
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG--GKDRVLKLW 498 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~--~~D~~v~iW 498 (500)
+..+|.+..||..+++..--+.+- .--+.|+.++|+..++.+ +.-...|.|
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~Et~~~Ri~ryw 85 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAETGRYRILRYW 85 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence 334567788999887754333331 234789999999977655 334455555
No 490
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=34.41 E-value=1.5e+02 Score=28.95 Aligned_cols=160 Identities=16% Similarity=0.212 Sum_probs=84.8
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce----eEEe-cCCC-CCEE-EEEEcCCCCEEEEEeCCCeEEE
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP----MFKC-TGHK-NWVL-CIAWSADGKHLVSGSKAGELQC 176 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~----~~~~-~~h~-~~v~-~v~~s~~~~~l~s~~~d~~i~~ 176 (500)
+..-..+|..+-..|||++|..-+. ..+.|+++.+... +... .+.. ..|. .+..-..|.-|+.++.||.|.-
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQ 294 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQ 294 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceee
Confidence 4444567788889999998877665 6788998865321 1111 1100 0111 1111224556788889999888
Q ss_pred E-eCCCCCcccccccCcccceEEEEeeee-----ecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816 177 W-DPQTGKPSGNPLSGHKKWITGISWEPV-----HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (500)
Q Consensus 177 w-d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (500)
| |...+.. +.-.| +....+.|. ......+-|++-...|++.++.....+.+..-. --....-+++++
T Consensus 295 WFdvr~~~~---p~l~h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~~~~~~~~~Sp 367 (733)
T COG4590 295 WFDVRRDGQ---PHLNH---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AYQAPQLVAMSP 367 (733)
T ss_pred eeeeecCCC---Cccee---eeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hhcCcceeeeCc
Confidence 8 5443321 11111 111111111 111223457777888888877654433332111 112344567787
Q ss_pred CCeEEEEeCCCeEEEEeCCCC
Q 010816 251 DGVIYTGSQDCTIKVWETTQG 271 (500)
Q Consensus 251 ~~~l~t~~~dg~i~lwd~~~~ 271 (500)
++--+..-+.|.|+++.+.+.
T Consensus 368 ~~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 368 NQAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred ccchheeecCCceEEEEecCC
Confidence 764444566688999877654
No 491
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=34.34 E-value=3.5e+02 Score=24.38 Aligned_cols=55 Identities=16% Similarity=0.116 Sum_probs=38.2
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEecCccccEE---EEEeC-CCCeEEEEeCCCeEEE
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT---CVKWG-GDGVIYTGSQDCTIKV 265 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~---~~~~~-~~~~l~t~~~dg~i~l 265 (500)
.-++.|..+|.|.|.|.+....+....-...++. .-.|. -|..|+.+++||.|.+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEE
Confidence 3588999999999999887766655443333332 12343 5667888899998865
No 492
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=32.75 E-value=8e+02 Score=28.07 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=22.5
Q ss_pred cccCCcccEEEEEEcC--CC-CeEE----EEeCCCcEEEEeCC
Q 010816 103 TIAGHTEAVLSVAFSP--DG-RQLA----SGSGDTTVRLWDLN 138 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp--~~-~~la----t~~~d~~i~iwd~~ 138 (500)
...||..+|-|..... ++ ++|| ..+.||++.|=|.+
T Consensus 342 mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 342 MGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred ccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 3468888888876643 22 2332 34578888887753
No 493
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=31.29 E-value=1.7e+02 Score=23.39 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred cccEEEEEEcCCCCeEEEEe-CCCcEEEEeCCCCcee-EEecC--CCCCEEEEEEcC
Q 010816 108 TEAVLSVAFSPDGRQLASGS-GDTTVRLWDLNTQTPM-FKCTG--HKNWVLCIAWSA 160 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~-~d~~i~iwd~~~~~~~-~~~~~--h~~~v~~v~~s~ 160 (500)
...+.---+.+|.+.|..++ +|++|+.|.+....+. ..+.. ...+...++|-|
T Consensus 10 s~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 10 SSGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp -SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred CCceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 44566777889988877665 7999999999876442 22221 234445555555
No 494
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.24 E-value=6.6e+02 Score=26.60 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=31.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
..+..++.||+.++||--..+|.|.+-+....+++..+.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 347788999999999999999999998877766655443
No 495
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=30.77 E-value=4.5e+02 Score=24.51 Aligned_cols=25 Identities=0% Similarity=-0.106 Sum_probs=15.1
Q ss_pred CCCCEEEEEeCCCc----EEEEeCCCCce
Q 010816 370 PDGQWVASASFDKS----IKLWNGTTGKF 394 (500)
Q Consensus 370 p~g~~lasgs~Dg~----i~lwd~~~~~~ 394 (500)
.++++.+.|+.++. +..||..+.+.
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred ECCEEEEEcCCCCccccceEEEecCCCee
Confidence 45677777776642 45667665543
No 496
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=30.53 E-value=4.9e+02 Score=28.07 Aligned_cols=93 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred cEEEEEEcC-CCCeEEEEeCCCcEEEEeC-----CCCceeEEecCCCCCE------E----EEEEcCCCCEEEEEeCCCe
Q 010816 110 AVLSVAFSP-DGRQLASGSGDTTVRLWDL-----NTQTPMFKCTGHKNWV------L----CIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 110 ~V~~~~~sp-~~~~lat~~~d~~i~iwd~-----~~~~~~~~~~~h~~~v------~----~v~~s~~~~~l~s~~~d~~ 173 (500)
+...++|+| +.+.||.....|.-.||++ .....+.....+.+.+ . .+.|.++-+.|+.++ ...
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r~~ 225 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-RSK 225 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-CCc
Q ss_pred EEEEeCCCCCccc-ccccCcccceEEEEeee
Q 010816 174 LQCWDPQTGKPSG-NPLSGHKKWITGISWEP 203 (500)
Q Consensus 174 i~~wd~~~~~~~~-~~~~~~~~~v~~~~~~~ 203 (500)
+.++|+++..... ........+|..+.-.|
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~ 256 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSP 256 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecC
No 497
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=28.07 E-value=2.8e+02 Score=22.12 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=42.8
Q ss_pred EEEEeCCCcEEEEeCCCCceeEEecCCC-CCEEEE-----------EEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 123 LASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCI-----------AWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 123 lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~v-----------~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+.+..||.|.|++..+++.+..+...+ +-|..+ ....+..+-++--.||.+.+-|..||+.
T Consensus 44 ~f~d~~~G~v~V~~~~~G~~va~~~~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~ 117 (135)
T TIGR03054 44 VFEDRPDGAVAVVETPDGRLVAILEPGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWS 117 (135)
T ss_pred EEecCCCCeEEEEECCCCCEEEEecCCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcE
Confidence 4556688999999998888887774332 222211 1234556778888899999999988864
No 498
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=27.95 E-value=4.4e+02 Score=28.60 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=30.5
Q ss_pred EEcCCCCEEEE-EECCC-----cEEEEECCCc-cccccccCcccCEEEEEEcCCCCE
Q 010816 436 SWSADSRLLLS-GSKDS-----TLKVWDIRTQ-KLKQDLPGHADEVFAVDWSPDGEK 485 (500)
Q Consensus 436 ~~s~~~~~l~s-~s~d~-----~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~dg~~ 485 (500)
+|||||+.||- .+.++ .|++-|+.+. .-+-+++..+..|..-...++|..
T Consensus 356 ~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt 412 (912)
T TIGR02171 356 DISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDT 412 (912)
T ss_pred cCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCe
Confidence 68999999997 56555 4888888752 222334444455554445555543
No 499
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=26.98 E-value=2.8e+02 Score=29.75 Aligned_cols=83 Identities=20% Similarity=0.058 Sum_probs=53.0
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe---CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
+.|.++....-+.+++..-.||+|.++|..+-+.+.... .....+.++.- ..+.+|.. . ....++|
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~---~Gf~fp~~-------~-~~~~vaf 328 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQ---AGFHFPCI-------Q-PPLHVAF 328 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccc---cccccccC-------C-CCceEEE
Confidence 457788877778899999999999999998876654330 11111222100 00111110 0 2334589
Q ss_pred cCCCCEEEEEECCCcEE
Q 010816 438 SADSRLLLSGSKDSTLK 454 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~ 454 (500)
||++.-++.-..+|.++
T Consensus 329 SPt~c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 329 SPTMCSLVQIDEDGKTK 345 (753)
T ss_pred CcccceEEEEecCCCce
Confidence 99999999999999866
No 500
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=26.87 E-value=2.6e+02 Score=27.69 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=36.7
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEec-----CCCCCEEEEEEcCCC
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKCT-----GHKNWVLCIAWSADG 162 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~~-----~h~~~v~~v~~s~~~ 162 (500)
.-+.|+|.|||++|++--..|.|++++-.++.. +..+. .-.+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 456899999999888776679999998654322 21111 125678889998873
Done!