Query 010816
Match_columns 500
No_of_seqs 375 out of 3458
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 14:51:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010816.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010816hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 4E-51 1.4E-55 418.5 44.7 389 79-500 104-609 (611)
2 1nr0_A Actin interacting prote 100.0 2.5E-49 8.7E-54 405.1 52.6 392 99-499 50-564 (611)
3 1vyh_C Platelet-activating fac 100.0 2.3E-49 7.8E-54 385.6 41.8 308 100-499 100-408 (410)
4 1got_B GT-beta; complex (GTP-b 100.0 4.2E-48 1.4E-52 367.3 43.4 287 101-499 48-340 (340)
5 3ow8_A WD repeat-containing pr 100.0 5.4E-48 1.8E-52 363.0 39.4 286 102-499 26-318 (321)
6 2ymu_A WD-40 repeat protein; u 100.0 3.9E-47 1.3E-51 387.4 47.3 324 99-499 253-577 (577)
7 2pbi_B Guanine nucleotide-bind 100.0 4.2E-47 1.4E-51 362.1 42.3 288 101-499 57-354 (354)
8 2ynn_A Coatomer subunit beta'; 100.0 2.3E-46 7.8E-51 349.5 42.0 286 101-496 6-297 (304)
9 3iz6_a 40S ribosomal protein R 100.0 2E-47 6.8E-52 368.3 34.1 298 100-499 58-372 (380)
10 4gqb_B Methylosome protein 50; 100.0 7.5E-46 2.6E-50 351.0 36.7 284 105-500 27-329 (344)
11 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-45 6.3E-50 349.7 39.5 291 100-499 7-332 (345)
12 2ymu_A WD-40 repeat protein; u 100.0 1.3E-44 4.5E-49 368.7 48.0 324 99-499 212-536 (577)
13 4ery_A WD repeat-containing pr 100.0 4.4E-45 1.5E-49 342.4 40.6 292 100-499 15-309 (312)
14 1r5m_A SIR4-interacting protei 100.0 2E-45 6.8E-50 359.7 39.2 323 106-500 43-423 (425)
15 3frx_A Guanine nucleotide-bind 100.0 5.5E-45 1.9E-49 342.5 40.4 284 101-499 10-314 (319)
16 4g56_B MGC81050 protein; prote 100.0 2.2E-45 7.5E-50 350.5 36.2 312 115-500 12-341 (357)
17 2pm9_A Protein WEB1, protein t 100.0 4.2E-46 1.4E-50 363.8 25.8 327 108-500 12-412 (416)
18 2xzm_R RACK1; ribosome, transl 100.0 1E-43 3.6E-48 337.5 41.4 294 101-499 14-337 (343)
19 1pgu_A Actin interacting prote 100.0 1.7E-43 5.7E-48 363.2 45.3 365 97-499 149-611 (615)
20 1erj_A Transcriptional repress 100.0 7.7E-44 2.6E-48 344.8 39.4 287 106-499 62-386 (393)
21 2hes_X YDR267CP; beta-propelle 100.0 6.7E-44 2.3E-48 336.8 36.9 289 100-500 6-326 (330)
22 2oaj_A Protein SNI1; WD40 repe 100.0 6.8E-43 2.3E-47 370.3 47.9 360 105-499 55-658 (902)
23 4g56_B MGC81050 protein; prote 100.0 2.1E-43 7.3E-48 336.8 36.9 287 105-461 39-344 (357)
24 1gxr_A ESG1, transducin-like e 100.0 8.1E-43 2.8E-47 330.3 39.0 320 107-499 8-334 (337)
25 2ovr_B FBW7, F-BOX/WD repeat p 100.0 7.6E-42 2.6E-46 336.8 43.0 317 101-499 111-439 (445)
26 2oaj_A Protein SNI1; WD40 repe 100.0 8.3E-43 2.8E-47 369.7 38.3 188 105-302 14-233 (902)
27 3sfz_A APAF-1, apoptotic pepti 100.0 3.5E-42 1.2E-46 381.2 44.8 356 102-499 609-1031(1249)
28 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-42 7.8E-47 382.7 41.4 413 79-499 616-1155(1249)
29 4aow_A Guanine nucleotide-bind 100.0 2.2E-41 7.5E-46 321.1 42.1 286 100-499 30-334 (340)
30 3vl1_A 26S proteasome regulato 100.0 4.9E-43 1.7E-47 342.6 30.4 341 109-499 57-416 (420)
31 1pgu_A Actin interacting prote 100.0 1.5E-40 5.1E-45 341.2 46.1 355 99-500 54-570 (615)
32 3mkq_A Coatomer beta'-subunit; 100.0 6.3E-41 2.1E-45 355.5 42.5 351 102-499 7-420 (814)
33 2j04_B YDR362CP, TAU91; beta p 100.0 2.6E-43 8.9E-48 350.1 22.3 316 107-499 132-514 (524)
34 3dm0_A Maltose-binding peripla 100.0 1.1E-40 3.6E-45 346.8 40.0 285 102-500 376-691 (694)
35 3zwl_B Eukaryotic translation 100.0 4.1E-40 1.4E-44 315.7 40.9 284 103-499 27-343 (369)
36 1sq9_A Antiviral protein SKI8; 100.0 4.2E-41 1.4E-45 326.4 34.4 293 101-499 9-392 (397)
37 3v7d_B Cell division control p 100.0 8.5E-40 2.9E-44 324.0 43.8 320 102-498 115-459 (464)
38 1vyh_C Platelet-activating fac 100.0 2E-40 6.8E-45 322.5 37.5 290 79-459 109-410 (410)
39 3gre_A Serine/threonine-protei 100.0 8.8E-41 3E-45 328.5 31.6 333 98-499 52-437 (437)
40 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-39 4.5E-44 305.0 37.8 283 100-499 10-293 (313)
41 3ow8_A WD repeat-containing pr 100.0 8.7E-40 3E-44 307.0 35.3 246 101-458 73-319 (321)
42 3i2n_A WD repeat-containing pr 100.0 3.7E-40 1.3E-44 314.7 32.6 290 103-499 13-350 (357)
43 3ei3_B DNA damage-binding prot 100.0 6E-40 2.1E-44 316.7 34.4 303 103-500 68-380 (383)
44 1k8k_C P40, ARP2/3 complex 41 100.0 8.7E-40 3E-44 314.0 35.2 300 105-499 5-358 (372)
45 2pm7_B Protein transport prote 100.0 3.3E-39 1.1E-43 300.0 35.9 258 103-499 4-282 (297)
46 4gqb_B Methylosome protein 50; 100.0 1.7E-39 5.9E-44 307.3 34.4 245 106-463 80-334 (344)
47 4e54_B DNA damage-binding prot 100.0 6.3E-40 2.2E-44 321.9 31.3 293 103-499 114-427 (435)
48 4h5i_A Guanine nucleotide-exch 100.0 9.3E-40 3.2E-44 312.5 30.7 289 109-500 15-341 (365)
49 2ynn_A Coatomer subunit beta'; 100.0 4.5E-39 1.5E-43 300.1 33.0 247 187-499 7-256 (304)
50 3k26_A Polycomb protein EED; W 100.0 2.5E-40 8.5E-45 316.9 24.9 312 104-500 14-364 (366)
51 1gxr_A ESG1, transducin-like e 100.0 1.1E-37 3.6E-42 295.1 40.3 281 105-458 48-335 (337)
52 4a11_B DNA excision repair pro 100.0 4.3E-38 1.5E-42 306.0 37.7 329 101-499 36-402 (408)
53 1got_B GT-beta; complex (GTP-b 100.0 5.4E-38 1.9E-42 297.7 37.3 246 142-499 47-298 (340)
54 1r5m_A SIR4-interacting protei 100.0 2.9E-38 1E-42 308.8 35.5 298 131-500 26-359 (425)
55 3dwl_C Actin-related protein 2 100.0 4.4E-40 1.5E-44 316.9 22.1 299 106-500 9-377 (377)
56 4gga_A P55CDC, cell division c 100.0 2.1E-37 7.1E-42 302.6 40.7 277 111-500 108-393 (420)
57 4a11_B DNA excision repair pro 100.0 4.6E-38 1.6E-42 305.8 34.5 310 128-499 21-362 (408)
58 1yfq_A Cell cycle arrest prote 100.0 1.2E-38 4.2E-43 302.4 29.3 275 104-494 7-315 (342)
59 2pbi_B Guanine nucleotide-bind 100.0 3.6E-37 1.2E-41 293.5 38.8 273 77-457 63-354 (354)
60 2pm9_A Protein WEB1, protein t 100.0 3.8E-39 1.3E-43 314.6 25.6 317 105-461 64-415 (416)
61 3bg1_A Protein SEC13 homolog; 100.0 9.2E-39 3.2E-43 299.7 26.1 253 103-390 8-292 (316)
62 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-37 3.7E-42 306.1 34.8 270 105-499 130-411 (435)
63 3frx_A Guanine nucleotide-bind 100.0 2.5E-37 8.5E-42 290.3 35.7 259 101-461 58-318 (319)
64 4aez_A CDC20, WD repeat-contai 100.0 1.8E-37 6E-42 301.3 34.9 292 104-467 87-387 (401)
65 3dw8_B Serine/threonine-protei 100.0 2.5E-38 8.6E-43 311.8 29.0 306 106-499 26-443 (447)
66 4ggc_A P55CDC, cell division c 100.0 2.5E-36 8.5E-41 283.4 39.7 277 111-500 28-313 (318)
67 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.9E-37 1E-41 293.2 33.3 250 142-499 7-280 (345)
68 3mmy_A MRNA export factor; mRN 100.0 6.8E-37 2.3E-41 293.1 33.9 299 101-498 32-342 (368)
69 1erj_A Transcriptional repress 100.0 9.7E-37 3.3E-41 295.0 35.1 258 109-460 124-389 (393)
70 3iz6_a 40S ribosomal protein R 100.0 6.1E-38 2.1E-42 302.0 24.1 261 132-499 48-326 (380)
71 2hes_X YDR267CP; beta-propelle 100.0 6.6E-37 2.3E-41 288.9 30.3 244 106-391 56-328 (330)
72 3vl1_A 26S proteasome regulato 100.0 3.9E-36 1.3E-40 293.7 35.7 290 101-460 91-419 (420)
73 2j04_B YDR362CP, TAU91; beta p 100.0 1.6E-37 5.4E-42 308.5 24.3 284 103-460 202-517 (524)
74 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-36 3.9E-41 294.7 29.2 291 107-491 14-350 (588)
75 3mkq_A Coatomer beta'-subunit; 100.0 6.6E-36 2.3E-40 317.0 37.6 288 143-499 6-299 (814)
76 4aez_A CDC20, WD repeat-contai 100.0 6E-36 2.1E-40 290.4 33.9 283 145-500 86-378 (401)
77 2xzm_R RACK1; ribosome, transl 100.0 9.1E-36 3.1E-40 282.8 34.2 253 101-392 69-341 (343)
78 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.8E-35 1.3E-39 288.9 39.6 288 92-460 141-442 (445)
79 3f3f_A Nucleoporin SEH1; struc 100.0 1.9E-36 6.4E-41 287.6 28.9 291 102-499 5-334 (351)
80 3bg1_A Protein SEC13 homolog; 100.0 9.2E-37 3.1E-41 286.1 25.8 247 187-499 7-290 (316)
81 4ery_A WD repeat-containing pr 100.0 1.8E-34 6.1E-39 270.2 40.0 252 99-459 56-311 (312)
82 3v7d_B Cell division control p 100.0 6.6E-35 2.2E-39 288.9 38.2 269 92-409 144-440 (464)
83 3jrp_A Fusion protein of prote 100.0 1.9E-35 6.6E-40 284.3 30.3 255 100-459 3-286 (379)
84 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-34 3.7E-39 276.5 32.9 287 134-499 3-333 (355)
85 4gga_A P55CDC, cell division c 100.0 4.4E-34 1.5E-38 279.0 35.5 276 89-478 124-413 (420)
86 4aow_A Guanine nucleotide-bind 100.0 1.8E-33 6.2E-38 266.5 37.5 253 100-393 78-339 (340)
87 3dm0_A Maltose-binding peripla 100.0 3.6E-34 1.2E-38 297.7 35.7 267 101-459 423-692 (694)
88 3gre_A Serine/threonine-protei 100.0 2.2E-35 7.4E-40 290.0 24.1 324 115-489 34-391 (437)
89 4gq1_A NUP37; propeller, trans 100.0 2E-35 6.9E-40 285.6 23.2 276 158-495 97-383 (393)
90 3jrp_A Fusion protein of prote 100.0 4.6E-34 1.6E-38 274.7 30.9 251 142-499 3-284 (379)
91 2aq5_A Coronin-1A; WD40 repeat 100.0 6E-34 2E-38 276.5 28.8 284 111-463 37-345 (402)
92 1sq9_A Antiviral protein SKI8; 100.0 1.4E-33 4.7E-38 273.4 30.8 264 100-462 54-397 (397)
93 3dwl_C Actin-related protein 2 100.0 1.1E-34 3.7E-39 279.2 22.0 243 147-498 8-278 (377)
94 3lrv_A PRE-mRNA-splicing facto 100.0 7.8E-34 2.7E-38 269.5 25.9 278 115-499 43-330 (343)
95 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.1E-33 1.7E-37 274.1 32.4 300 109-499 5-388 (450)
96 3jro_A Fusion protein of prote 100.0 1.1E-33 3.9E-38 295.6 29.0 248 102-499 3-282 (753)
97 2j04_A TAU60, YPL007P, hypothe 100.0 4E-34 1.4E-38 277.0 23.4 259 148-499 13-294 (588)
98 3zwl_B Eukaryotic translation 100.0 4.6E-32 1.6E-36 259.6 36.4 255 99-466 65-352 (369)
99 3k26_A Polycomb protein EED; W 100.0 2.1E-33 7.1E-38 268.8 24.7 244 107-390 68-365 (366)
100 2xyi_A Probable histone-bindin 100.0 2.4E-32 8.1E-37 267.5 31.9 246 188-499 123-407 (430)
101 3dw8_B Serine/threonine-protei 100.0 7.7E-33 2.6E-37 272.6 28.6 248 148-499 26-370 (447)
102 3i2n_A WD repeat-containing pr 100.0 9.2E-33 3.2E-37 263.4 28.2 253 105-394 62-356 (357)
103 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-32 6E-37 263.1 30.0 252 100-393 44-363 (372)
104 3odt_A Protein DOA1; ubiquitin 100.0 1.5E-31 5.1E-36 250.1 35.4 248 100-466 51-302 (313)
105 4h5i_A Guanine nucleotide-exch 100.0 8E-33 2.7E-37 264.4 26.3 244 103-460 68-343 (365)
106 3ei3_B DNA damage-binding prot 100.0 2.7E-32 9.1E-37 263.2 30.2 248 137-499 60-336 (383)
107 2aq5_A Coronin-1A; WD40 repeat 100.0 8.7E-33 3E-37 268.3 26.3 276 154-499 38-339 (402)
108 2w18_A PALB2, fancn, partner a 100.0 5.1E-32 1.7E-36 246.6 29.4 283 110-499 41-354 (356)
109 3vu4_A KMHSV2; beta-propeller 100.0 2E-32 6.8E-37 260.8 27.8 299 103-462 14-338 (355)
110 3bws_A Protein LP49; two-domai 100.0 7.1E-31 2.4E-35 257.4 39.3 317 109-499 61-429 (433)
111 4ggc_A P55CDC, cell division c 100.0 3.1E-31 1.1E-35 248.6 35.2 259 89-461 44-316 (318)
112 2xyi_A Probable histone-bindin 100.0 3.1E-32 1.1E-36 266.7 27.8 251 103-392 123-411 (430)
113 2pm7_B Protein transport prote 100.0 2.4E-31 8.1E-36 246.9 30.3 218 99-390 44-284 (297)
114 4e54_B DNA damage-binding prot 100.0 1.4E-32 4.7E-37 269.7 21.7 284 80-394 121-433 (435)
115 1l0q_A Surface layer protein; 100.0 7E-30 2.4E-34 246.9 38.3 304 121-499 3-339 (391)
116 1p22_A F-BOX/WD-repeat protein 100.0 3.3E-30 1.1E-34 252.8 34.8 230 191-499 131-362 (435)
117 1yfq_A Cell cycle arrest prote 100.0 7.4E-31 2.5E-35 248.8 26.7 248 147-500 8-280 (342)
118 4gq1_A NUP37; propeller, trans 100.0 3.3E-31 1.1E-35 256.0 23.0 262 103-458 84-387 (393)
119 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-30 7.7E-35 245.7 24.0 225 209-499 47-289 (343)
120 3bws_A Protein LP49; two-domai 100.0 8.2E-29 2.8E-33 242.8 34.8 278 109-459 123-431 (433)
121 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-29 8E-34 238.6 29.6 262 100-396 49-342 (351)
122 2w18_A PALB2, fancn, partner a 100.0 4.9E-29 1.7E-33 227.0 26.9 259 100-458 78-355 (356)
123 3mmy_A MRNA export factor; mRN 100.0 2.5E-28 8.6E-33 233.5 30.8 251 135-500 24-302 (368)
124 1l0q_A Surface layer protein; 100.0 6.9E-27 2.4E-31 225.8 39.7 328 102-489 26-365 (391)
125 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.5E-28 1.9E-32 238.1 32.1 247 104-390 98-390 (450)
126 1nir_A Nitrite reductase; hemo 100.0 9.9E-28 3.4E-32 240.1 32.2 315 115-499 144-511 (543)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 1.9E-27 6.6E-32 231.0 26.3 299 109-484 63-410 (415)
128 2ecf_A Dipeptidyl peptidase IV 100.0 1.7E-26 5.7E-31 242.2 34.0 317 108-499 36-456 (741)
129 1k32_A Tricorn protease; prote 100.0 1.5E-26 5.2E-31 250.7 34.0 351 100-499 44-499 (1045)
130 3jro_A Fusion protein of prote 100.0 2.4E-27 8.3E-32 247.8 24.9 221 99-393 44-287 (753)
131 1nir_A Nitrite reductase; hemo 99.9 4E-25 1.4E-29 221.2 32.9 301 99-470 170-524 (543)
132 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-25 3.9E-30 235.1 26.8 311 110-489 18-427 (723)
133 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.4E-24 4.7E-29 210.9 28.0 279 151-499 63-384 (415)
134 1k32_A Tricorn protease; prote 99.9 6.9E-24 2.4E-28 229.9 33.7 341 100-499 237-634 (1045)
135 2z3z_A Dipeptidyl aminopeptida 99.9 7.9E-24 2.7E-28 220.6 29.9 311 111-499 28-432 (706)
136 2ojh_A Uncharacterized protein 99.9 9.3E-24 3.2E-28 195.1 23.2 254 125-493 17-293 (297)
137 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-23 7.5E-28 218.5 26.9 281 150-499 36-410 (741)
138 3vgz_A Uncharacterized protein 99.9 6E-22 2.1E-26 188.2 34.1 274 108-492 40-334 (353)
139 3u4y_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 188.1 31.6 275 115-499 4-301 (331)
140 2z3z_A Dipeptidyl aminopeptida 99.9 2.5E-22 8.7E-27 209.2 31.1 280 109-462 82-437 (706)
141 1ri6_A Putative isomerase YBHE 99.9 6.2E-22 2.1E-26 187.2 28.3 291 123-485 8-336 (343)
142 3o4h_A Acylamino-acid-releasin 99.9 2.6E-22 8.9E-27 204.2 26.5 275 108-499 21-312 (582)
143 1pby_B Quinohemoprotein amine 99.9 1.1E-21 3.6E-26 185.1 28.6 285 121-470 2-320 (337)
144 1z68_A Fibroblast activation p 99.9 4.9E-22 1.7E-26 207.5 24.1 311 113-499 20-440 (719)
145 1ri6_A Putative isomerase YBHE 99.9 8E-21 2.7E-25 179.5 26.3 271 164-499 7-305 (343)
146 1xfd_A DIP, dipeptidyl aminope 99.9 5.9E-22 2E-26 207.0 20.2 306 152-499 18-390 (723)
147 1jmx_B Amine dehydrogenase; ox 99.9 1.5E-20 5.2E-25 178.1 25.5 285 113-470 4-335 (349)
148 2ojh_A Uncharacterized protein 99.9 8.4E-21 2.9E-25 175.1 22.2 234 103-451 36-293 (297)
149 3pe7_A Oligogalacturonate lyas 99.9 1.6E-19 5.3E-24 173.9 27.4 296 134-499 14-379 (388)
150 1pby_B Quinohemoprotein amine 99.9 5.2E-20 1.8E-24 173.5 23.3 261 163-499 2-307 (337)
151 2oit_A Nucleoporin 214KDA; NH2 99.9 5.2E-20 1.8E-24 179.3 23.5 179 108-292 36-251 (434)
152 3hfq_A Uncharacterized protein 99.9 7.3E-19 2.5E-23 166.6 29.8 269 128-499 14-314 (347)
153 3u4y_A Uncharacterized protein 99.8 7.5E-19 2.6E-23 165.3 28.5 250 106-463 38-307 (331)
154 4a5s_A Dipeptidyl peptidase 4 99.8 2E-18 6.7E-23 180.4 31.0 306 110-490 18-434 (740)
155 2oit_A Nucleoporin 214KDA; NH2 99.8 7.8E-19 2.7E-23 170.9 24.2 212 130-461 23-279 (434)
156 3scy_A Hypothetical bacterial 99.8 3.1E-17 1.1E-21 156.2 34.9 265 107-480 48-360 (361)
157 3vgz_A Uncharacterized protein 99.8 5.8E-18 2E-22 160.6 28.7 235 150-499 40-300 (353)
158 3hfq_A Uncharacterized protein 99.8 4E-18 1.4E-22 161.5 26.5 254 107-464 38-323 (347)
159 1z68_A Fibroblast activation p 99.8 3.7E-19 1.3E-23 185.7 19.8 282 110-463 61-446 (719)
160 2oiz_A Aromatic amine dehydrog 99.8 1.4E-17 4.8E-22 158.2 28.5 296 119-484 14-360 (361)
161 3o4h_A Acylamino-acid-releasin 99.8 6.5E-19 2.2E-23 179.1 20.3 232 193-499 21-273 (582)
162 3scy_A Hypothetical bacterial 99.8 4.4E-17 1.5E-21 155.2 29.3 269 163-499 14-334 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.1E-17 1.4E-21 155.6 27.5 277 123-499 5-338 (365)
164 1jmx_B Amine dehydrogenase; ox 99.8 1.8E-17 6.1E-22 156.9 24.9 249 209-499 10-322 (349)
165 3azo_A Aminopeptidase; POP fam 99.8 3.7E-17 1.3E-21 168.9 25.3 258 102-406 17-339 (662)
166 3pe7_A Oligogalacturonate lyas 99.8 4E-17 1.4E-21 157.0 23.5 298 102-458 24-380 (388)
167 3c5m_A Oligogalacturonate lyas 99.8 4.3E-17 1.5E-21 157.2 22.9 289 135-499 15-379 (396)
168 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.1E-16 7.3E-21 150.6 21.9 154 108-269 39-223 (365)
169 3fvz_A Peptidyl-glycine alpha- 99.7 3.5E-15 1.2E-19 139.9 29.8 244 108-460 23-322 (329)
170 3fvz_A Peptidyl-glycine alpha- 99.7 1.6E-15 5.3E-20 142.3 27.2 254 150-499 23-319 (329)
171 4a5s_A Dipeptidyl peptidase 4 99.7 1.2E-16 4.2E-21 166.8 20.9 297 152-490 18-381 (740)
172 2gop_A Trilobed protease; beta 99.7 3.3E-15 1.1E-19 141.3 27.3 270 109-473 15-342 (347)
173 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.7E-19 132.5 31.0 240 105-392 26-281 (286)
174 3azo_A Aminopeptidase; POP fam 99.7 9.6E-16 3.3E-20 158.3 25.0 291 146-498 19-363 (662)
175 3c5m_A Oligogalacturonate lyas 99.7 4.2E-16 1.4E-20 150.2 19.6 294 110-462 37-386 (396)
176 1q7f_A NHL, brain tumor CG1071 99.7 2E-14 6.7E-19 132.0 29.9 233 192-499 28-277 (286)
177 2dg1_A DRP35, lactonase; beta 99.7 5.9E-15 2E-19 138.7 25.0 274 109-492 6-300 (333)
178 2z2n_A Virginiamycin B lyase; 99.7 1.4E-12 4.9E-17 120.1 38.0 281 105-461 11-296 (299)
179 2gop_A Trilobed protease; beta 99.7 2.5E-14 8.6E-19 135.2 26.0 254 151-499 15-328 (347)
180 2bkl_A Prolyl endopeptidase; m 99.6 2.2E-14 7.6E-19 148.7 24.8 273 118-463 77-400 (695)
181 2oiz_A Aromatic amine dehydrog 99.6 3.7E-14 1.3E-18 134.5 23.9 252 104-404 47-349 (361)
182 2z2n_A Virginiamycin B lyase; 99.6 5.3E-12 1.8E-16 116.2 37.7 276 148-497 12-291 (299)
183 2xdw_A Prolyl endopeptidase; a 99.6 2.6E-13 8.8E-18 141.1 30.6 274 118-462 81-416 (710)
184 1qks_A Cytochrome CD1 nitrite 99.6 5.3E-12 1.8E-16 126.0 36.9 315 117-499 164-535 (567)
185 3e5z_A Putative gluconolactona 99.6 9.9E-13 3.4E-17 121.2 27.6 229 192-497 26-282 (296)
186 2bkl_A Prolyl endopeptidase; m 99.6 4.9E-14 1.7E-18 146.0 20.2 244 105-394 117-400 (695)
187 2xdw_A Prolyl endopeptidase; a 99.6 3.4E-13 1.2E-17 140.2 26.3 245 105-393 121-416 (710)
188 3dsm_A Uncharacterized protein 99.6 2.4E-12 8.3E-17 120.4 28.4 255 170-499 15-299 (328)
189 2dg1_A DRP35, lactonase; beta 99.6 7.4E-12 2.5E-16 117.4 31.9 160 104-269 40-212 (333)
190 3e5z_A Putative gluconolactona 99.6 2.3E-12 7.8E-17 118.8 27.2 242 106-463 25-289 (296)
191 3no2_A Uncharacterized protein 99.6 1.4E-12 4.8E-17 118.4 25.0 213 209-489 4-230 (276)
192 2qc5_A Streptogramin B lactona 99.5 1.4E-10 4.6E-15 106.8 36.0 241 107-394 18-262 (300)
193 1rwi_B Serine/threonine-protei 99.5 6.5E-12 2.2E-16 113.9 25.7 226 209-499 34-261 (270)
194 3no2_A Uncharacterized protein 99.5 6.7E-12 2.3E-16 113.9 25.1 192 119-400 4-204 (276)
195 1rwi_B Serine/threonine-protei 99.5 7.7E-12 2.6E-16 113.4 25.6 240 110-393 25-266 (270)
196 2qc5_A Streptogramin B lactona 99.5 2.6E-10 8.8E-15 104.9 35.9 274 149-498 18-296 (300)
197 1yr2_A Prolyl oligopeptidase; 99.5 2.5E-12 8.7E-17 134.2 23.6 272 118-462 116-443 (741)
198 3dsm_A Uncharacterized protein 99.5 3.6E-11 1.2E-15 112.4 29.1 244 109-400 44-310 (328)
199 1qks_A Cytochrome CD1 nitrite 99.5 8.6E-11 2.9E-15 117.2 32.4 273 160-499 165-474 (567)
200 2mad_H Methylamine dehydrogena 99.5 1.1E-09 3.7E-14 103.9 37.3 274 116-466 28-356 (373)
201 1yr2_A Prolyl oligopeptidase; 99.5 4.9E-12 1.7E-16 132.0 22.1 245 106-394 160-444 (741)
202 3sjl_D Methylamine dehydrogena 99.4 1.1E-10 3.6E-15 109.4 28.4 296 115-482 39-384 (386)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.7E-15 107.6 28.2 232 196-499 20-296 (314)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.5E-10 1.2E-14 104.9 29.3 242 109-460 18-299 (314)
205 3q7m_A Lipoprotein YFGL, BAMB; 99.4 3.6E-10 1.2E-14 107.8 28.9 305 119-499 52-375 (376)
206 1yiq_A Quinohemoprotein alcoho 99.4 4.1E-11 1.4E-15 123.1 22.6 312 120-488 70-534 (689)
207 1xip_A Nucleoporin NUP159; bet 99.4 1.7E-11 5.8E-16 115.3 17.0 169 110-297 39-229 (388)
208 3g4e_A Regucalcin; six bladed 99.3 2E-09 6.8E-14 99.0 29.4 224 195-491 14-261 (297)
209 2mad_H Methylamine dehydrogena 99.3 4.9E-09 1.7E-13 99.4 31.8 274 159-499 29-347 (373)
210 3hrp_A Uncharacterized protein 99.3 2.7E-09 9.2E-14 102.6 27.8 249 151-458 131-408 (409)
211 3c75_H MADH, methylamine dehyd 99.3 2.4E-09 8.3E-14 102.1 26.6 282 118-467 82-409 (426)
212 3sjl_D Methylamine dehydrogena 99.3 6.6E-10 2.3E-14 104.1 21.5 241 113-400 82-372 (386)
213 1xip_A Nucleoporin NUP159; bet 99.3 1.6E-10 5.6E-15 108.6 17.4 172 152-410 39-221 (388)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 1E-08 3.5E-13 95.6 29.5 220 197-491 52-291 (326)
215 1kb0_A Quinohemoprotein alcoho 99.3 1.1E-09 3.6E-14 112.4 24.2 310 120-488 77-536 (677)
216 3iuj_A Prolyl endopeptidase; h 99.2 8E-10 2.7E-14 114.2 21.6 243 105-394 125-408 (693)
217 3g4e_A Regucalcin; six bladed 99.2 1.9E-08 6.6E-13 92.3 28.1 215 111-408 15-246 (297)
218 3hrp_A Uncharacterized protein 99.2 1.2E-08 4.2E-13 98.0 27.5 234 109-389 131-408 (409)
219 2qe8_A Uncharacterized protein 99.2 1.2E-09 4.1E-14 102.7 19.1 269 151-495 17-314 (343)
220 3hxj_A Pyrrolo-quinoline quino 99.1 2.2E-09 7.5E-14 100.2 18.9 296 114-498 25-320 (330)
221 3iuj_A Prolyl endopeptidase; h 99.1 1.1E-08 3.7E-13 105.7 25.4 241 148-462 126-407 (693)
222 3q7m_A Lipoprotein YFGL, BAMB; 99.1 1.8E-08 6.2E-13 96.0 24.1 262 119-457 102-375 (376)
223 2qe8_A Uncharacterized protein 99.1 1.1E-08 3.9E-13 96.0 20.6 231 109-394 17-281 (343)
224 3dr2_A Exported gluconolactona 99.1 9E-08 3.1E-12 88.2 25.3 154 108-271 44-225 (305)
225 2hz6_A Endoplasmic reticulum t 99.1 1.9E-10 6.4E-15 109.2 7.1 146 119-276 8-155 (369)
226 3dr2_A Exported gluconolactona 99.0 6.7E-08 2.3E-12 89.1 23.9 231 193-497 44-302 (305)
227 2hz6_A Endoplasmic reticulum t 99.0 1.1E-10 3.8E-15 110.8 5.2 204 209-484 8-216 (369)
228 2ghs_A AGR_C_1268P; regucalcin 99.0 3.1E-07 1.1E-11 85.4 28.3 220 111-380 51-291 (326)
229 3c75_H MADH, methylamine dehyd 99.0 4.2E-08 1.4E-12 93.6 22.6 274 160-499 82-399 (426)
230 1mda_H Methylamine dehydrogena 99.0 1.7E-08 5.8E-13 94.7 19.4 268 131-481 47-366 (368)
231 1kb0_A Quinohemoprotein alcoho 99.0 2.2E-08 7.4E-13 102.7 21.8 323 162-499 77-504 (677)
232 4a2l_A BT_4663, two-component 99.0 4.2E-06 1.4E-10 88.0 36.7 311 111-498 133-476 (795)
233 4a2l_A BT_4663, two-component 99.0 9.4E-06 3.2E-10 85.3 39.0 311 111-498 175-522 (795)
234 1yiq_A Quinohemoprotein alcoho 99.0 9.7E-08 3.3E-12 98.1 23.0 325 162-500 70-503 (689)
235 1kv9_A Type II quinohemoprotei 98.9 1.2E-07 4E-12 97.2 23.3 314 120-490 66-520 (668)
236 1mda_H Methylamine dehydrogena 98.9 1.3E-07 4.4E-12 88.7 19.1 238 113-404 69-359 (368)
237 3hxj_A Pyrrolo-quinoline quino 98.8 1.6E-07 5.5E-12 87.4 17.1 266 108-460 59-324 (330)
238 3v9f_A Two-component system se 98.7 0.00022 7.4E-09 74.7 37.2 309 109-493 163-516 (781)
239 3v9f_A Two-component system se 98.7 0.00024 8.3E-09 74.3 37.5 312 109-499 211-565 (781)
240 1w6s_A Methanol dehydrogenase 98.6 2.5E-05 8.6E-10 78.2 27.0 114 120-237 62-199 (599)
241 1kv9_A Type II quinohemoprotei 98.6 4.3E-06 1.5E-10 85.5 21.4 313 162-499 66-485 (668)
242 2ece_A 462AA long hypothetical 98.6 1.9E-05 6.5E-10 74.6 23.3 232 212-490 98-399 (462)
243 1flg_A Protein (quinoprotein e 98.6 2.4E-05 8.3E-10 78.4 25.8 114 120-236 68-200 (582)
244 2ad6_A Methanol dehydrogenase 98.5 3.7E-05 1.3E-09 77.0 26.0 112 120-237 62-193 (571)
245 2iwa_A Glutamine cyclotransfer 98.5 3.7E-05 1.3E-09 68.0 21.8 186 243-497 23-232 (266)
246 1npe_A Nidogen, entactin; glyc 98.5 0.00032 1.1E-08 62.7 28.5 249 164-484 3-263 (267)
247 1k3i_A Galactose oxidase precu 98.4 9.5E-06 3.2E-10 83.1 19.6 114 113-232 190-326 (656)
248 2ad6_A Methanol dehydrogenase 98.4 3.7E-05 1.3E-09 77.0 22.9 115 162-279 62-194 (571)
249 3nol_A Glutamine cyclotransfer 98.4 4.1E-05 1.4E-09 66.9 19.3 182 243-491 45-244 (262)
250 3nok_A Glutaminyl cyclase; bet 98.4 6.1E-05 2.1E-09 65.8 19.6 182 243-491 57-254 (268)
251 2ece_A 462AA long hypothetical 98.3 0.00038 1.3E-08 65.9 25.7 152 115-272 88-291 (462)
252 2iwa_A Glutamine cyclotransfer 98.3 0.00065 2.2E-08 60.1 24.5 157 110-278 22-189 (266)
253 1w6s_A Methanol dehydrogenase 98.2 0.00028 9.6E-09 70.7 23.9 117 162-279 62-200 (599)
254 3mbr_X Glutamine cyclotransfer 98.2 0.00049 1.7E-08 59.6 21.8 184 242-491 22-223 (243)
255 1npe_A Nidogen, entactin; glyc 98.2 0.0028 9.6E-08 56.5 27.8 233 122-399 3-246 (267)
256 1flg_A Protein (quinoprotein e 98.1 0.00047 1.6E-08 69.1 23.2 113 163-278 69-201 (582)
257 2fp8_A Strictosidine synthase; 98.1 0.0016 5.6E-08 59.9 25.3 241 152-460 20-313 (322)
258 1fwx_A Nitrous oxide reductase 98.1 0.0001 3.5E-09 72.3 16.8 250 212-491 104-407 (595)
259 2xe4_A Oligopeptidase B; hydro 98.1 0.00031 1.1E-08 73.0 21.1 157 106-270 170-354 (751)
260 3nol_A Glutamine cyclotransfer 98.1 0.00096 3.3E-08 58.3 20.7 150 211-400 54-210 (262)
261 2p4o_A Hypothetical protein; p 98.1 0.0066 2.2E-07 55.3 27.7 152 110-270 33-198 (306)
262 3nok_A Glutaminyl cyclase; bet 98.0 0.0016 5.4E-08 57.0 21.3 150 210-399 65-218 (268)
263 3mbr_X Glutamine cyclotransfer 98.0 0.0043 1.5E-07 53.7 22.7 156 110-278 22-187 (243)
264 1fwx_A Nitrous oxide reductase 97.9 0.0024 8.3E-08 62.6 22.9 67 432-499 279-358 (595)
265 2p4o_A Hypothetical protein; p 97.9 0.014 4.7E-07 53.2 27.9 225 196-492 34-278 (306)
266 2fp8_A Strictosidine synthase; 97.9 0.0057 1.9E-07 56.2 23.9 237 211-499 31-310 (322)
267 3amr_A 3-phytase; beta-propell 97.6 0.016 5.3E-07 53.0 21.4 187 253-499 42-260 (355)
268 2xbg_A YCF48-like protein; pho 97.6 0.049 1.7E-06 50.0 34.2 269 150-499 35-319 (327)
269 2xe4_A Oligopeptidase B; hydro 97.4 0.0097 3.3E-07 61.8 20.3 53 340-392 248-305 (751)
270 3v65_B Low-density lipoprotein 97.4 0.09 3.1E-06 49.5 28.9 244 112-400 80-327 (386)
271 3v64_C Agrin; beta propeller, 97.4 0.083 2.8E-06 49.0 29.8 245 109-399 34-283 (349)
272 3qqz_A Putative uncharacterize 97.4 0.06 2E-06 47.1 22.8 201 146-389 22-251 (255)
273 3tc9_A Hypothetical hydrolase; 97.2 0.17 6E-06 48.3 25.4 153 110-269 138-300 (430)
274 1k3i_A Galactose oxidase precu 97.2 0.014 4.7E-07 59.6 17.5 71 113-183 247-325 (656)
275 3v65_B Low-density lipoprotein 97.1 0.17 5.9E-06 47.6 28.0 216 218-498 94-314 (386)
276 3s94_A LRP-6, low-density lipo 97.1 0.31 1E-05 49.1 36.0 165 109-278 84-251 (619)
277 3v64_C Agrin; beta propeller, 97.1 0.19 6.7E-06 46.5 27.9 216 218-498 51-271 (349)
278 2xbg_A YCF48-like protein; pho 97.0 0.19 6.4E-06 46.1 33.9 145 108-265 35-187 (327)
279 4hw6_A Hypothetical protein, I 96.9 0.29 1E-05 46.8 23.6 47 212-259 154-200 (433)
280 4hw6_A Hypothetical protein, I 96.8 0.28 9.5E-06 46.9 22.1 192 244-499 142-371 (433)
281 3p5b_L Low density lipoprotein 96.8 0.38 1.3E-05 45.4 30.9 244 122-408 85-337 (400)
282 3sov_A LRP-6, low-density lipo 96.8 0.32 1.1E-05 44.3 27.3 230 129-400 12-247 (318)
283 1ijq_A LDL receptor, low-densi 96.7 0.35 1.2E-05 44.0 32.2 227 130-399 10-246 (316)
284 3amr_A 3-phytase; beta-propell 96.5 0.48 1.6E-05 43.3 23.8 144 119-268 39-208 (355)
285 3qqz_A Putative uncharacterize 96.4 0.44 1.5E-05 41.6 24.2 205 236-499 22-250 (255)
286 3pbp_A Nucleoporin NUP82; beta 96.3 0.51 1.7E-05 44.2 18.9 144 117-265 29-207 (452)
287 1n7d_A LDL receptor, low-densi 96.2 0.071 2.4E-06 54.6 14.7 228 129-399 385-622 (699)
288 3sov_A LRP-6, low-density lipo 96.1 0.76 2.6E-05 41.8 28.7 180 171-391 12-197 (318)
289 3ei3_A DNA damage-binding prot 95.9 2.6 8.7E-05 45.8 33.2 72 108-179 553-634 (1158)
290 1ijq_A LDL receptor, low-densi 95.8 1.1 3.6E-05 40.7 30.4 215 219-498 9-234 (316)
291 2p9w_A MAL S 1 allergenic prot 95.8 1.1 3.6E-05 40.7 20.5 77 362-460 138-215 (334)
292 3tc9_A Hypothetical hydrolase; 95.8 0.59 2E-05 44.6 17.9 152 244-459 140-300 (430)
293 2p9w_A MAL S 1 allergenic prot 95.6 1.2 4.2E-05 40.3 18.8 152 197-391 16-215 (334)
294 3m0c_C LDL receptor, low-densi 95.6 2.5 8.7E-05 43.6 31.1 231 128-400 402-641 (791)
295 3kya_A Putative phosphatase; s 95.3 2.2 7.6E-05 41.2 27.1 153 110-268 140-339 (496)
296 3pbp_A Nucleoporin NUP82; beta 95.1 1.4 4.9E-05 41.2 17.0 125 362-496 67-206 (452)
297 2be1_A Serine/threonine-protei 95.0 2 6.9E-05 39.2 18.1 115 163-279 11-139 (339)
298 4a0p_A LRP6, LRP-6, low-densit 95.0 3.4 0.00012 41.5 38.7 163 110-279 81-246 (628)
299 3s94_A LRP-6, low-density lipo 94.9 3.6 0.00012 41.2 34.1 231 128-400 16-252 (619)
300 1n7d_A LDL receptor, low-densi 94.8 0.11 3.9E-06 53.1 10.1 164 111-279 455-623 (699)
301 3p5b_L Low density lipoprotein 94.4 3.4 0.00012 38.9 31.7 180 171-392 91-278 (400)
302 3sre_A PON1, serum paraoxonase 94.1 3.5 0.00012 37.9 20.8 58 434-492 225-287 (355)
303 3m0c_C LDL receptor, low-densi 94.1 6.3 0.00021 40.8 28.1 181 171-393 403-591 (791)
304 4a0p_A LRP6, LRP-6, low-densit 94.0 5.7 0.0002 39.9 28.9 181 170-392 13-198 (628)
305 2xzh_A Clathrin heavy chain 1; 93.8 3.6 0.00012 37.1 26.8 208 249-496 75-326 (365)
306 2vpj_A Kelch-like protein 12; 93.7 3.3 0.00011 36.9 16.5 51 440-492 206-263 (301)
307 1bpo_A Protein (clathrin); cla 93.6 4.9 0.00017 37.9 28.5 159 337-496 123-325 (494)
308 2vpj_A Kelch-like protein 12; 93.0 4.6 0.00016 35.9 19.4 135 130-274 31-188 (301)
309 3kya_A Putative phosphatase; s 93.0 6.8 0.00023 37.8 24.3 154 197-389 142-339 (496)
310 1tl2_A L10, protein (tachylect 93.0 2.1 7.1E-05 36.2 12.4 67 109-180 41-115 (236)
311 1xi4_A Clathrin heavy chain; a 92.4 8.4 0.00029 42.2 18.9 157 338-495 124-324 (1630)
312 1tl2_A L10, protein (tachylect 91.8 1.9 6.5E-05 36.4 10.7 109 362-496 42-157 (236)
313 2ism_A Putative oxidoreductase 91.7 3.3 0.00011 38.1 13.7 103 361-490 31-153 (352)
314 3ii7_A Kelch-like protein 7; p 91.0 8 0.00027 34.4 20.5 143 122-274 14-182 (306)
315 3das_A Putative oxidoreductase 90.4 9 0.00031 35.0 15.0 34 361-394 32-65 (347)
316 2xn4_A Kelch-like protein 2; s 90.2 9.4 0.00032 33.8 17.2 52 440-493 204-262 (302)
317 3ii7_A Kelch-like protein 7; p 89.9 10 0.00034 33.7 16.5 51 440-492 200-257 (306)
318 3ei3_A DNA damage-binding prot 89.6 26 0.0009 38.0 39.6 111 110-227 515-634 (1158)
319 3a9g_A Putative uncharacterize 88.7 4.7 0.00016 37.1 12.0 31 361-393 29-59 (354)
320 2be1_A Serine/threonine-protei 88.6 1.8 6.2E-05 39.5 8.8 145 121-267 11-181 (339)
321 4asc_A Kelch repeat and BTB do 88.4 13 0.00045 33.1 17.5 51 440-492 196-253 (315)
322 1cru_A Protein (soluble quinop 88.2 9.8 0.00033 36.4 14.2 32 362-393 28-59 (454)
323 2xn4_A Kelch-like protein 2; s 88.0 14 0.00047 32.7 19.7 106 161-274 61-186 (302)
324 1zgk_A Kelch-like ECH-associat 88.0 12 0.0004 33.4 14.1 52 440-493 215-273 (308)
325 2g8s_A Glucose/sorbosone dehyd 87.3 16 0.00055 33.4 14.7 26 243-268 20-46 (353)
326 3ott_A Two-component system se 86.2 32 0.0011 35.2 31.2 113 150-273 21-133 (758)
327 2ism_A Putative oxidoreductase 83.8 26 0.00088 32.0 24.0 52 439-490 276-333 (352)
328 2woz_A Kelch repeat and BTB do 83.7 24 0.00081 31.5 15.7 51 440-492 206-263 (318)
329 1zgk_A Kelch-like ECH-associat 83.5 23 0.0008 31.3 18.3 146 119-274 24-197 (308)
330 3sre_A PON1, serum paraoxonase 83.2 27 0.00094 31.9 19.8 59 332-390 236-297 (355)
331 2g8s_A Glucose/sorbosone dehyd 81.3 7 0.00024 35.9 9.4 27 362-389 19-46 (353)
332 3sbq_A Nitrous-oxide reductase 80.6 4.8 0.00016 39.2 7.8 114 360-491 322-454 (638)
333 4asc_A Kelch repeat and BTB do 80.1 32 0.0011 30.6 20.1 137 130-274 13-178 (315)
334 2uvk_A YJHT; unknown function, 79.0 20 0.00068 32.6 11.8 40 452-493 286-327 (357)
335 4gq2_M Nucleoporin NUP120; bet 78.9 16 0.00055 38.7 12.2 39 361-399 236-274 (950)
336 2zwa_A Leucine carboxyl methyl 78.5 60 0.0021 32.9 16.3 28 366-393 544-579 (695)
337 4fhn_B Nucleoporin NUP120; pro 78.5 48 0.0016 36.0 16.0 37 363-399 240-276 (1139)
338 2xzh_A Clathrin heavy chain 1; 75.8 46 0.0016 30.1 31.6 229 128-405 47-304 (365)
339 1xi4_A Clathrin heavy chain; a 74.1 1.1E+02 0.0039 33.8 20.8 224 128-399 46-297 (1630)
340 3ott_A Two-component system se 70.5 98 0.0034 31.6 37.1 151 110-271 192-353 (758)
341 1cru_A Protein (soluble quinop 69.6 78 0.0027 30.0 21.1 29 243-271 29-58 (454)
342 2wg3_C Hedgehog-interacting pr 66.0 92 0.0032 29.6 13.1 29 362-390 15-44 (463)
343 3sbq_A Nitrous-oxide reductase 65.0 30 0.001 33.8 9.1 70 112-181 326-408 (638)
344 3zwu_A Alkaline phosphatase PH 63.5 16 0.00055 36.1 7.3 55 435-489 481-548 (592)
345 3qhy_B Beta-lactamase inhibito 63.5 76 0.0026 27.7 21.5 49 219-269 41-89 (282)
346 1bpo_A Protein (clathrin); cla 62.6 1.1E+02 0.0036 29.1 32.7 229 128-405 46-303 (494)
347 2zwa_A Leucine carboxyl methyl 59.7 1.5E+02 0.0052 29.9 14.2 108 119-231 451-579 (695)
348 3das_A Putative oxidoreductase 59.0 1.1E+02 0.0036 27.9 28.0 72 110-181 33-116 (347)
349 2wg3_C Hedgehog-interacting pr 55.9 1.4E+02 0.0048 28.4 14.9 51 111-161 16-79 (463)
350 3f7f_A Nucleoporin NUP120; nuc 54.5 22 0.00076 35.8 6.5 37 362-400 223-259 (729)
351 4fhn_B Nucleoporin NUP120; pro 53.5 42 0.0014 36.5 9.2 31 435-465 243-273 (1139)
352 4gq2_M Nucleoporin NUP120; bet 49.3 23 0.00079 37.5 6.2 37 109-145 236-272 (950)
353 3f7f_A Nucleoporin NUP120; nuc 48.0 31 0.0011 34.8 6.4 37 241-278 222-258 (729)
354 4a9v_A PHOX; hydrolase, beta-p 45.6 50 0.0017 32.3 7.3 56 434-489 480-548 (592)
355 3zwu_A Alkaline phosphatase PH 45.1 85 0.0029 31.0 9.0 58 111-168 478-548 (592)
356 3a9g_A Putative uncharacterize 44.7 1.8E+02 0.0061 26.3 26.7 52 439-490 275-330 (354)
357 3qhy_B Beta-lactamase inhibito 40.3 1.8E+02 0.0063 25.2 19.4 127 129-269 41-167 (282)
358 2uvk_A YJHT; unknown function, 39.8 2E+02 0.007 25.6 18.5 28 439-466 315-348 (357)
359 2woz_A Kelch repeat and BTB do 30.8 2.7E+02 0.0092 24.3 22.2 136 131-274 25-188 (318)
360 4a9v_A PHOX; hydrolase, beta-p 30.7 2.1E+02 0.0071 28.1 8.9 61 109-169 476-549 (592)
361 3s25_A Hypothetical 7-bladed b 30.6 2.8E+02 0.0095 24.4 19.2 30 366-395 150-180 (302)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4e-51 Score=418.51 Aligned_cols=389 Identities=20% Similarity=0.348 Sum_probs=304.7
Q ss_pred eeEEEEEEeecce--------------EeEEecccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCcee
Q 010816 79 EKVLSIVYQPQAV--------------FRIRPVNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPM 143 (500)
Q Consensus 79 ~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~ 143 (500)
..+..+.|.|... ..++....+..++.||.+.|.+++|+|++. +|++|+.|++|++||..+++..
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~ 183 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK 183 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence 4566677776532 223334455677899999999999999987 5999999999999999988888
Q ss_pred EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc------CcccceEEEEeeeeecCCCCceEEEEe
Q 010816 144 FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSAS 217 (500)
Q Consensus 144 ~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s 217 (500)
..+.+|...|.+++|+|||++|++|+.|++|++||..+++....... +|...|.+++|+| ++.++++++
T Consensus 184 ~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~s~s 258 (611)
T 1nr0_A 184 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-----DGTKIASAS 258 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECT-----TSSEEEEEE
T ss_pred eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECC-----CCCEEEEEe
Confidence 88999999999999999999999999999999999988875433212 7999999999987 456899999
Q ss_pred CCCcEEEEECCCCeEEE-------------------------------------------EecCccccEEEEEeCCCC-e
Q 010816 218 KDGDARIWDVSLRKCVI-------------------------------------------CLSGHTLAVTCVKWGGDG-V 253 (500)
Q Consensus 218 ~dg~v~iwd~~~~~~~~-------------------------------------------~~~~h~~~v~~~~~~~~~-~ 253 (500)
.|++|++||+++++++. .+.+|...|.+++|++++ .
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKT 338 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCE
Confidence 99999999998776543 345799999999999987 6
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCC-----------------------
Q 010816 254 IYTGSQDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSS----------------------- 309 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 309 (500)
|++++.|++|++||+.+++....+ ..|...|.+++++++..+..+..+.....+..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 418 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEE
T ss_pred EEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEE
Confidence 889999999999999998877665 56888899988887665544443321110000
Q ss_pred --HHH-HH------------HHHH------Hhhhh-hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816 310 --PEE-MK------------KAAL------ERYNK-IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367 (500)
Q Consensus 310 --~~~-~~------------~~~~------~~~~~-~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~ 367 (500)
+.. .. .... ..... ...+.+..+++|+.|++|++||+...........+|...|++++
T Consensus 419 ~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~ 498 (611)
T 1nr0_A 419 VSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 498 (611)
T ss_dssp ECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEE
T ss_pred EeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEE
Confidence 000 00 0000 00000 11234678999999999999997543221122368999999999
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCC-CceEEE--EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEE
Q 010816 368 FSPDGQWVASASFDKSIKLWNGTT-GKFVAV--FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLL 444 (500)
Q Consensus 368 ~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 444 (500)
|+|||++||+++.|++|++||+.+ ++++.. +.+|...|.++ +|+|+|++|
T Consensus 499 fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v---------------------------~fspdg~~l 551 (611)
T 1nr0_A 499 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV---------------------------SWSPDNVRL 551 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE---------------------------EECTTSSEE
T ss_pred ECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEE---------------------------EECCCCCEE
Confidence 999999999999999999999987 665543 34588888887 679999999
Q ss_pred EEEECCCcEEEEECCCcc-cc-ccccCc-ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 445 LSGSKDSTLKVWDIRTQK-LK-QDLPGH-ADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~-~~-~~~~~h-~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
|+|+.|++|+|||+.++. .. ..+.+| .+.|++++|+||++ |++++.|++|++|+.
T Consensus 552 asgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred EEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 999999999999998765 33 567789 89999999999998 999999999999973
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.5e-49 Score=405.13 Aligned_cols=392 Identities=21% Similarity=0.300 Sum_probs=292.7
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCC----C
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKA----G 172 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d----~ 172 (500)
....++.||.+.|++++|+|+|++||+|+.|++|+|||+.++. ....+.+|.++|.+++|+|+|++|++++.+ +
T Consensus 50 ~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~ 129 (611)
T 1nr0_A 50 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFG 129 (611)
T ss_dssp SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSE
T ss_pred ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCcee
Confidence 3456788999999999999999999999999999999997543 345678999999999999999999998865 4
Q ss_pred eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (500)
.|++||. ++.. ..+.+|...|.+++|+|.. ..++++|+.|++|++||...+++...+.+|...|.+++|+|++
T Consensus 130 ~v~~wd~--~~~~-~~l~gh~~~v~~v~f~p~~----~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg 202 (611)
T 1nr0_A 130 HVFLFDT--GTSN-GNLTGQARAMNSVDFKPSR----PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG 202 (611)
T ss_dssp EEEETTT--CCBC-BCCCCCSSCEEEEEECSSS----SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEeeC--CCCc-ceecCCCCCceEEEECCCC----CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC
Confidence 7888884 4333 3578999999999998842 1369999999999999999999999999999999999999987
Q ss_pred -eEEEEeCCCeEEEEeCCCCeeEEEee-------cCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHH------H
Q 010816 253 -VIYTGSQDCTIKVWETTQGKLIRELK-------GHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKA------A 317 (500)
Q Consensus 253 -~l~t~~~dg~i~lwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~ 317 (500)
.|++|+.|++|++||..+++.+..+. +|...|.+++++|+.. +.++..|.....+......... .
T Consensus 203 ~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~ 282 (611)
T 1nr0_A 203 SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282 (611)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCC
Confidence 58899999999999999999888874 7999999999998753 3444444332222100000000 0
Q ss_pred HH-hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEE
Q 010816 318 LE-RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVA 396 (500)
Q Consensus 318 ~~-~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~ 396 (500)
.. ....+. ..+..+++++.|+++++||..... ....+.+|...|++++|+|+|++|++++.|++|++||+.++++..
T Consensus 283 ~~~~~~~~~-~~~~~l~s~s~d~~i~~~~~~~~~-~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 283 IEDQQLGII-WTKQALVSISANGFINFVNPELGS-IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp GGGCEEEEE-ECSSCEEEEETTCCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred ccceeEEEE-EcCCEEEEEeCCCcEEEEeCCCCC-cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 00 000000 023457777788888888765432 344567999999999999999999999999999999999988766
Q ss_pred EE-eCCcccEEEEEeeee--------------------------------------------------------------
Q 010816 397 VF-RGHVGPVYQIRFELI-------------------------------------------------------------- 413 (500)
Q Consensus 397 ~~-~~h~~~v~~~~~~~~-------------------------------------------------------------- 413 (500)
.+ .+|...+.++.+...
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 55 456666666554100
Q ss_pred -----------eeecC-CCC----------ceee-------------eeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 414 -----------YCFRY-PSN----------FYCV-------------VDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 414 -----------~~~~~-~~~----------~~~~-------------~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
.+..+ |.+ ...+ ......+..++|+|+|++|++++.|++|++||+
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 00000 000 0000 011223455778888888888888888888888
Q ss_pred CC-cccccc--ccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 459 RT-QKLKQD--LPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 459 ~~-~~~~~~--~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+ +++... +.+|.+.|++++|+|||++|++||.|++|++|+
T Consensus 521 ~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 521 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence 76 554443 345999999999999999999999999999997
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.3e-49 Score=385.58 Aligned_cols=308 Identities=29% Similarity=0.453 Sum_probs=271.4
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
....+.||.++|++++|+|++++||+|+.|++|+|||+.++.....+.+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~ 179 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF 179 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
.+++... .+.+|...|.++.|.| ++..+++|+.|++|++||++++.++..+.+|...|.++.|++++ .+++|+
T Consensus 180 ~~~~~~~-~~~~h~~~V~~v~~~p-----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 180 QGFECIR-TMHGHDHNVSSVSIMP-----NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp TSSCEEE-CCCCCSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceeE-EEcCCCCCEEEEEEeC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 8876543 5788999999999987 34689999999999999999999999999999999999999887 588999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|++|++||+.+++....+..|...|.+++++|+........
T Consensus 254 ~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~-------------------------------------- 295 (410)
T 1vyh_C 254 NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISE-------------------------------------- 295 (410)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG--------------------------------------
T ss_pred CCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhh--------------------------------------
Confidence 999999999999999999999999999999887532100000
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
.. +. ......++|.+|++|+.|+.|++||+.+++++..+.+|...|.++
T Consensus 296 --------~~---------~~----~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v---------- 344 (410)
T 1vyh_C 296 --------AT---------GS----ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV---------- 344 (410)
T ss_dssp --------CC---------SC----C-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE----------
T ss_pred --------hc---------cc----cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEE----------
Confidence 00 00 001123458899999999999999999999999999999999887
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+|+|+|++|++|+.|++|++||+.+++.+..+.+|.+.|++++|+|++++|++|+.|++|++|
T Consensus 345 -----------------~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW 407 (410)
T 1vyh_C 345 -----------------LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407 (410)
T ss_dssp -----------------EECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEE
T ss_pred -----------------EEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence 568999999999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
+
T Consensus 408 ~ 408 (410)
T 1vyh_C 408 E 408 (410)
T ss_dssp C
T ss_pred e
Confidence 7
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.2e-48 Score=367.28 Aligned_cols=287 Identities=25% Similarity=0.454 Sum_probs=254.7
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..++.||.+.|.+++|+|++++|++|+.|++|+|||+.++..+..+..|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus 48 ~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~ 127 (340)
T 1got_B 48 RRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred heeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECc
Confidence 45678999999999999999999999999999999999999998899999999999999999999999999999999998
Q ss_pred CCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEE
Q 010816 181 TGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 181 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t 256 (500)
++.. ....+.+|...|.++.|.+. ..+++++.|++|++||+++++++..+.+|...|.+++|++++ .+++
T Consensus 128 ~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 128 TREGNVRVSRELAGHTGYLSCCRFLDD------NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp TCSBSCEEEEEEECCSSCEEEEEEEET------TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred cCCCcceeEEEecCCCccEEEEEECCC------CcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 7642 22346789999999998762 369999999999999999999999999999999999999987 5889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
|+.|++|++||+++++....
T Consensus 202 g~~d~~v~~wd~~~~~~~~~------------------------------------------------------------ 221 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQT------------------------------------------------------------ 221 (340)
T ss_dssp EETTSCEEEEETTTCSEEEE------------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCeeEEE------------------------------------------------------------
Confidence 99999999999877543322
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC--cccEEEEEeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH--VGPVYQIRFELIY 414 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h--~~~v~~~~~~~~~ 414 (500)
+.+|...|++++|+|++++|++|+.||.|++||+++++.+..+..+ ...+.++
T Consensus 222 -------------------~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~------ 276 (340)
T 1got_B 222 -------------------FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV------ 276 (340)
T ss_dssp -------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE------
T ss_pred -------------------EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE------
Confidence 2356778999999999999999999999999999998877665422 2344444
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
+|+|+|++|++|+.|+.|++||+.+++....+.+|.+.|.+++|+|+|++|+|||.|++
T Consensus 277 ---------------------~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 277 ---------------------SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp ---------------------EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ---------------------EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 67999999999999999999999999998999999999999999999999999999999
Q ss_pred EEEec
Q 010816 495 LKLWM 499 (500)
Q Consensus 495 v~iW~ 499 (500)
|+||+
T Consensus 336 i~iWd 340 (340)
T 1got_B 336 LKIWN 340 (340)
T ss_dssp EEEEC
T ss_pred EEecC
Confidence 99996
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.4e-48 Score=362.98 Aligned_cols=286 Identities=24% Similarity=0.430 Sum_probs=255.0
Q ss_pred ccccCCcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 102 ATIAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
..+.+|.+.|++++|+|+ +.+|+||+.|++|+|||+.++.. ...+.+|...|.+++|++++.++++++.|++|+
T Consensus 26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~ 105 (321)
T 3ow8_A 26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR 105 (321)
T ss_dssp EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 456799999999999985 67899999999999999987653 346789999999999999999999999999999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI 254 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l 254 (500)
+||+.+++... .+..|...+.++.|+| ++..+++|+.|+.|++||++.++....+..|...|.+++|++++ .|
T Consensus 106 lWd~~~~~~~~-~~~~~~~~~~~~~~sp-----dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 179 (321)
T 3ow8_A 106 LWDLENGKQIK-SIDAGPVDAWTLAFSP-----DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYL 179 (321)
T ss_dssp EEETTTTEEEE-EEECCTTCCCCEEECT-----TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEE
T ss_pred EEECCCCCEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEE
Confidence 99999887644 3566777788888876 55789999999999999999999999999999999999999987 58
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++|+.|+.|++||+++++.+..+
T Consensus 180 asg~~dg~i~iwd~~~~~~~~~~--------------------------------------------------------- 202 (321)
T 3ow8_A 180 ASGAIDGIINIFDIATGKLLHTL--------------------------------------------------------- 202 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEE---------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCcEEEEE---------------------------------------------------------
Confidence 89999999999999877654332
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+.+|...|.++
T Consensus 203 ----------------------~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~------ 254 (321)
T 3ow8_A 203 ----------------------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV------ 254 (321)
T ss_dssp ----------------------CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEE------
T ss_pred ----------------------cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEE------
Confidence 2455678899999999999999999999999999999999999999999887
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
+|+|++.+|++|+.|++|++||+++++++..+.+|.+.|++++|+|+|++|++++.|++
T Consensus 255 ---------------------~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 255 ---------------------AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE 313 (321)
T ss_dssp ---------------------EECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC
T ss_pred ---------------------EECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe
Confidence 56999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 010816 495 LKLWM 499 (500)
Q Consensus 495 v~iW~ 499 (500)
|++|+
T Consensus 314 i~vwd 318 (321)
T 3ow8_A 314 IHIYD 318 (321)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99997
No 6
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.9e-47 Score=387.38 Aligned_cols=324 Identities=37% Similarity=0.645 Sum_probs=290.2
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
.+...+.+|...|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 253 ~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~ 331 (577)
T 2ymu_A 253 QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 331 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 4556788999999999999999999999999999999975 456677889999999999999999999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~ 257 (500)
...... ..+.+|...+.+++|.| ++..+++++.|+.+++||. +++.+..+.+|...|.+++|++++ .|+++
T Consensus 332 ~~~~~~--~~~~~~~~~v~~~~~s~-----~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~ 403 (577)
T 2ymu_A 332 RNGQHL--QTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASA 403 (577)
T ss_dssp TTSCEE--EEECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred CCCCee--EEEeCCCCCEEEEEECC-----CCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEE
Confidence 865432 34678889999999876 4568999999999999995 567788889999999999999987 58899
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|+.|++||. +++.+..+..|...|.+++++|+ ...+++++.
T Consensus 404 ~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------~~~l~~~~~ 446 (577)
T 2ymu_A 404 SDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPD------------------------------------DQTIASASD 446 (577)
T ss_dssp ETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred eCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEcC
Confidence 99999999995 67888889999999999999875 357899999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
|++|++||.. ......+.+|...|.+++|+|++++||+++.|+.|++||. +++++..+.+|..+|.++
T Consensus 447 d~~v~~w~~~--~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l--------- 514 (577)
T 2ymu_A 447 DKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV--------- 514 (577)
T ss_dssp TSEEEEEETT--SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---------
T ss_pred CCEEEEEECC--CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEE---------
Confidence 9999999963 3445677899999999999999999999999999999995 788999999999999887
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+|+|+|++|++++.|+.|+|||. +++.+..+.+|.+.|++++|+|||++|+|+|.|++|++
T Consensus 515 ------------------~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~ 575 (577)
T 2ymu_A 515 ------------------AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKL 575 (577)
T ss_dssp ------------------EECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred ------------------EEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEE
Confidence 56999999999999999999996 67778889999999999999999999999999999999
Q ss_pred ec
Q 010816 498 WM 499 (500)
Q Consensus 498 W~ 499 (500)
|+
T Consensus 576 Wd 577 (577)
T 2ymu_A 576 WN 577 (577)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 7
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.2e-47 Score=362.10 Aligned_cols=288 Identities=26% Similarity=0.451 Sum_probs=252.4
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..++.||.+.|++++|+|++++||||+.|++|+|||..++.....+..|...|.+++|+|+|.+|++|+.|+.+++|++.
T Consensus 57 ~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 57 RRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred EEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 35678999999999999999999999999999999999998888888999999999999999999999999999999986
Q ss_pred CCCc-----ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC---C
Q 010816 181 TGKP-----SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---G 252 (500)
Q Consensus 181 ~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~ 252 (500)
.... ....+.+|...|.++.|.| +...+++++.|++|++||+++++++..+.+|...|.++.|+++ .
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTN-----SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred ccccccccccceeeeccCCcEEEEEEeC-----CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 5421 1223567899999999976 3458999999999999999999999999999999999999763 4
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
.|++|+.|++|++||+++++.+..
T Consensus 212 ~l~sgs~Dg~v~~wd~~~~~~~~~-------------------------------------------------------- 235 (354)
T 2pbi_B 212 TFVSGGCDKKAMVWDMRSGQCVQA-------------------------------------------------------- 235 (354)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEE--------------------------------------------------------
T ss_pred EEEEEeCCCeEEEEECCCCcEEEE--------------------------------------------------------
Confidence 789999999999999887654332
Q ss_pred EEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc--ccEEEEEe
Q 010816 333 VSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV--GPVYQIRF 410 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~--~~v~~~~~ 410 (500)
+.+|...|++++|+|++.+|++|+.|++|++||+++++.+..+..+. ..+.+
T Consensus 236 -----------------------~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~--- 289 (354)
T 2pbi_B 236 -----------------------FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASS--- 289 (354)
T ss_dssp -----------------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE---
T ss_pred -----------------------ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeE---
Confidence 23567789999999999999999999999999999988776665432 23333
Q ss_pred eeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe
Q 010816 411 ELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~ 490 (500)
++|+|+|++|++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|||++|++|+
T Consensus 290 ------------------------~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 290 ------------------------VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp ------------------------EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred ------------------------EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEc
Confidence 36799999999999999999999999998889999999999999999999999999
Q ss_pred CCCcEEEec
Q 010816 491 KDRVLKLWM 499 (500)
Q Consensus 491 ~D~~v~iW~ 499 (500)
.|++|++|+
T Consensus 346 ~D~~v~vW~ 354 (354)
T 2pbi_B 346 WDHTLRVWA 354 (354)
T ss_dssp TTSEEEEEC
T ss_pred CCCCEEecC
Confidence 999999995
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.3e-46 Score=349.53 Aligned_cols=286 Identities=25% Similarity=0.393 Sum_probs=250.7
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..++.+|.+.|.+++|+|++++||+|+.||+|+|||+.++..+..+.+|..+|.+++|+|++++|++|+.|++|++||+.
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~ 85 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred EEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 34678999999999999999999999999999999999999988999999999999999999999999999999999876
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~ 259 (500)
+++. +..+.+|...|.+++|++++ .|++|+.
T Consensus 86 ~~~~------------------------------------------------~~~~~~h~~~v~~~~~~~~~~~l~sgs~ 117 (304)
T 2ynn_A 86 TGEK------------------------------------------------VVDFEAHPDYIRSIAVHPTKPYVLSGSD 117 (304)
T ss_dssp TCCE------------------------------------------------EEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred CCcE------------------------------------------------EEEEeCCCCcEEEEEEcCCCCEEEEECC
Confidence 6532 22345788889999998876 6889999
Q ss_pred CCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 260 DCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 260 dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
|++|++||++++ .....+.+|...|.+++++|.. +..+++|+.|
T Consensus 118 D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~-----------------------------------~~~l~sgs~D 162 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD-----------------------------------PSTFASGCLD 162 (304)
T ss_dssp TSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTC-----------------------------------TTEEEEEETT
T ss_pred CCeEEEEECCCCcchhhhhcccCCcEEEEEECCCC-----------------------------------CCEEEEEeCC
Confidence 999999999877 4557788999999999998731 3579999999
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
++|++||+...........+|...+..++|+| ++.+|++|+.|++|++||+++++++..+.+|...|..+
T Consensus 163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~-------- 234 (304)
T 2ynn_A 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA-------- 234 (304)
T ss_dssp SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEE--------
T ss_pred CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEE--------
Confidence 99999998766555555567778899999987 77899999999999999999999999999999998877
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC--EEEEEeCCCc
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE--KVASGGKDRV 494 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~s~~~D~~ 494 (500)
+|+|++.+|++|+.||+|++||+++++..+.+..|...+++++|+|++. ++++|+.|+.
T Consensus 235 -------------------~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~ 295 (304)
T 2ynn_A 235 -------------------VFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF 295 (304)
T ss_dssp -------------------EECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEE
T ss_pred -------------------EECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCce
Confidence 5699999999999999999999999999999999999999999999875 5888887775
Q ss_pred EE
Q 010816 495 LK 496 (500)
Q Consensus 495 v~ 496 (500)
+.
T Consensus 296 ~~ 297 (304)
T 2ynn_A 296 TV 297 (304)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-47 Score=368.28 Aligned_cols=298 Identities=24% Similarity=0.460 Sum_probs=249.9
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
+..++.||.+.|++++|+|++++||+|+.|++|+|||+.++.....+.+|...|.+++|+|+|++|++|+.|+.+++||+
T Consensus 58 ~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~ 137 (380)
T 3iz6_a 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNL 137 (380)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEEC
T ss_pred EeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEEC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----cCccccEEEEEe
Q 010816 180 QTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-----SGHTLAVTCVKW 248 (500)
Q Consensus 180 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-----~~h~~~v~~~~~ 248 (500)
.+.. .....+.+|...+.++.|.|. ...++++|+.|++|++||+++++++..+ .+|...|.++.|
T Consensus 138 ~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~----~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~ 213 (380)
T 3iz6_a 138 SSQADRDGNMPVSRVLTGHKGYASSCQYVPD----QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSI 213 (380)
T ss_dssp CCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS----SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEE
T ss_pred CCCccccCCccceeeccCCCcceEEEEEecC----CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEe
Confidence 7532 123357789999999988763 2347999999999999999999888776 578888888888
Q ss_pred CC-C-CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 249 GG-D-GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 249 ~~-~-~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
++ + ..+++|+.|++|++||++..
T Consensus 214 ~~~~~~~l~sgs~D~~v~~wd~~~~------------------------------------------------------- 238 (380)
T 3iz6_a 214 NSLNANMFISGSCDTTVRLWDLRIT------------------------------------------------------- 238 (380)
T ss_dssp CSSSCCEEEEEETTSCEEEEETTTT-------------------------------------------------------
T ss_pred ecCCCCEEEEEECCCeEEEEECCCC-------------------------------------------------------
Confidence 65 3 36777888888888886531
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
......+.+|...|++++|+|+|++|++|+.||+|++||+++++.+..+..+....
T Consensus 239 -----------------------~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~- 294 (380)
T 3iz6_a 239 -----------------------SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN- 294 (380)
T ss_dssp -----------------------CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-
T ss_pred -----------------------CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-
Confidence 11223345788889999999999999999999999999999999888776543210
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc----cCcccCEEEEEEcCC
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL----PGHADEVFAVDWSPD 482 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~h~~~V~~l~~s~d 482 (500)
......+..++|+|+|++|++|+.||.|++||+..++....+ .+|.+.|++++|+||
T Consensus 295 -------------------~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~d 355 (380)
T 3iz6_a 295 -------------------DNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD 355 (380)
T ss_dssp -------------------CCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSS
T ss_pred -------------------ccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCC
Confidence 000112345589999999999999999999999888776555 689999999999999
Q ss_pred CCEEEEEeCCCcEEEec
Q 010816 483 GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 483 g~~l~s~~~D~~v~iW~ 499 (500)
|++|+|||.|++|++|+
T Consensus 356 g~~l~sgs~D~~i~iW~ 372 (380)
T 3iz6_a 356 GSALCTGSWDKNLKIWA 372 (380)
T ss_dssp SSEEEEECTTSCEEEEE
T ss_pred CCEEEEeeCCCCEEEEe
Confidence 99999999999999997
No 10
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=7.5e-46 Score=350.97 Aligned_cols=284 Identities=20% Similarity=0.247 Sum_probs=235.5
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-----------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-----------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-----------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
..|...|.+++|+|||++|++++ |+++++||... .........|...|.+++|+|++ .|++|+.||+
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 35778899999999999999887 77888887321 11111223467789999999985 7889999999
Q ss_pred EEEEeCCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816 174 LQCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (500)
Q Consensus 174 i~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (500)
|++||+++++... ....+|...|.+++|+| ++.++++|+.|++|++||+++++++..+.+|...|.++.|++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-----dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~ 179 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLS-----SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP 179 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence 9999999887543 23458999999999987 557899999999999999999999999999999999999998
Q ss_pred CC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 251 DG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 251 ~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
++ .+++++.|++|++||+++++....+..
T Consensus 180 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~------------------------------------------------- 210 (344)
T 4gqb_B 180 HKDSVFLSCSEDNRILLWDTRCPKPASQIGC------------------------------------------------- 210 (344)
T ss_dssp SCTTEEEEEETTSCEEEEETTSSSCEEECC--------------------------------------------------
T ss_pred CCCCceeeeccccccccccccccceeeeeec-------------------------------------------------
Confidence 75 588999999999999988765443210
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
..|...+.+++|+|+ +++||+|+.||.|++||+++++++..+.+|...|.+
T Consensus 211 ----------------------------~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~ 262 (344)
T 4gqb_B 211 ----------------------------SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262 (344)
T ss_dssp -------------------------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEE
T ss_pred ----------------------------ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEE
Confidence 123345788999994 678999999999999999999999999999999988
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCE-
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEK- 485 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~- 485 (500)
+ +|+|++ ++||+|+.|++|+|||++++++. .+.+|.+.|++++|+|+++.
T Consensus 263 v---------------------------~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 263 L---------------------------VFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp E---------------------------EECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTE
T ss_pred E---------------------------EEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeE
Confidence 8 568987 68999999999999999998765 46799999999999999874
Q ss_pred EEEEeCCCcEEEecC
Q 010816 486 VASGGKDRVLKLWMG 500 (500)
Q Consensus 486 l~s~~~D~~v~iW~~ 500 (500)
|+|||.|++|++|+.
T Consensus 315 las~s~D~~v~~w~v 329 (344)
T 4gqb_B 315 LTTVGWDHQVVHHVV 329 (344)
T ss_dssp EEEEETTSCEEEEEC
T ss_pred EEEEcCCCeEEEEEC
Confidence 679999999999973
No 11
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-45 Score=349.69 Aligned_cols=291 Identities=25% Similarity=0.491 Sum_probs=238.3
Q ss_pred ccccccCCcc-cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee---EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 100 CSATIAGHTE-AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM---FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 100 ~~~~~~gh~~-~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~---~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
+..++.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++... ....+|...|.+++|+|++++|++|+.|++++
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~ 86 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTC 86 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEE
Confidence 3456789988 9999999999999999999999999999877533 22368999999999999999999999999999
Q ss_pred EEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccccEEEEEeCCC
Q 010816 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTLAVTCVKWGGD 251 (500)
Q Consensus 176 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~ 251 (500)
+||..++.. ....+.+|...|.+++|+| ++..|++|+.|++|++||++.+ .++..+.+|...|.++.|+++
T Consensus 87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 161 (345)
T 3fm0_A 87 IWKKNQDDFECVTTLEGHENEVKSVAWAP-----SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPS 161 (345)
T ss_dssp EEEECCC-EEEEEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred EEEccCCCeEEEEEccCCCCCceEEEEeC-----CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCC
Confidence 999887642 2345789999999999987 4568999999999999999765 456778899999999999998
Q ss_pred C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 252 G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
+ .|++|+.|++|++||..+++...
T Consensus 162 ~~~l~s~s~d~~i~~w~~~~~~~~~------------------------------------------------------- 186 (345)
T 3fm0_A 162 QELLASASYDDTVKLYREEEDDWVC------------------------------------------------------- 186 (345)
T ss_dssp SSCEEEEETTSCEEEEEEETTEEEE-------------------------------------------------------
T ss_pred CCEEEEEeCCCcEEEEEecCCCEEE-------------------------------------------------------
Confidence 6 68899999999999976543110
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------------ceE
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG---------------KFV 395 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~---------------~~~ 395 (500)
...+.+|...|.+++|+|+|++||+|+.|++|++||.... +++
T Consensus 187 ----------------------~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
T 3fm0_A 187 ----------------------CATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI 244 (345)
T ss_dssp ----------------------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEE
T ss_pred ----------------------EEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcccee
Confidence 0123467888999999999999999999999999985321 223
Q ss_pred EEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc---------cc
Q 010816 396 AVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL---------KQ 465 (500)
Q Consensus 396 ~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~---------~~ 465 (500)
..+.+ |...|+++ +|+|++..|++++.|+.|++|+...... ..
T Consensus 245 ~~~~~~h~~~v~~v---------------------------~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~ 297 (345)
T 3fm0_A 245 CTLSGFHSRTIYDI---------------------------AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAH 297 (345)
T ss_dssp EEECSSCSSCEEEE---------------------------EECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEE
T ss_pred EEecCCCCCcEEEE---------------------------EEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEee
Confidence 33333 45555544 7899999999999999999999875431 12
Q ss_pred cccCcccCEEEEEEcCCC-CEEEEEeCCCcEEEec
Q 010816 466 DLPGHADEVFAVDWSPDG-EKVASGGKDRVLKLWM 499 (500)
Q Consensus 466 ~~~~h~~~V~~l~~s~dg-~~l~s~~~D~~v~iW~ 499 (500)
...+|.+.|++++|+|++ ..|||||.||+|++|+
T Consensus 298 ~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 298 LHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp ETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred ecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 346899999999999998 4999999999999997
No 12
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-44 Score=368.71 Aligned_cols=324 Identities=36% Similarity=0.624 Sum_probs=287.5
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
.+...+.+|.+.|.+++|+|++++|++++.|+.|++||.. ++.+..+.+|...|.+++|+|+++.|++++.|+.|++||
T Consensus 212 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 212 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN 290 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred cEEEEEecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEe
Confidence 3456778999999999999999999999999999999964 566778889999999999999999999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~ 257 (500)
... +. ...+.+|...|.+++|+| ++..+++++.|+.|++||.... .+..+.+|...|.+++|++++ .++++
T Consensus 291 ~~~-~~-~~~~~~h~~~v~~~~~~~-----~~~~l~t~~~d~~i~~w~~~~~-~~~~~~~~~~~v~~~~~s~~g~~l~~~ 362 (577)
T 2ymu_A 291 RNG-QL-LQTLTGHSSSVWGVAFSP-----DGQTIASASDDKTVKLWNRNGQ-HLQTLTGHSSSVWGVAFSPDGQTIASA 362 (577)
T ss_dssp TTS-CE-EEEECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCC-cE-EEEEecCCCCeEEEEECC-----CCCEEEEEeCCCeEEEEeCCCC-eeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 753 32 235678999999999876 4568999999999999998654 556788999999999999987 58889
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|+.|++||. +++.+..+..|...|.+++++++ +..+++++.
T Consensus 363 ~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d------------------------------------g~~l~~~~~ 405 (577)
T 2ymu_A 363 SDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPD------------------------------------GQTIASASD 405 (577)
T ss_dssp ETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTT------------------------------------SSCEEEEET
T ss_pred eCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCC------------------------------------CCEEEEEeC
Confidence 99999999995 67888889999999999999875 346899999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
|+.|++||.. ......+.+|...|.+++|+||+++|++++.|+.|++||. +++.+..+.+|..++.++
T Consensus 406 d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~--------- 473 (577)
T 2ymu_A 406 DKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGV--------- 473 (577)
T ss_dssp TSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEE---------
T ss_pred CCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEE---------
Confidence 9999999953 3445677899999999999999999999999999999996 678888899999998887
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
+|+|++++|++++.|+.|++||. +++.+..+.+|...|++++|+|||++|++++.|++|++
T Consensus 474 ------------------~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~l 534 (577)
T 2ymu_A 474 ------------------AFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL 534 (577)
T ss_dssp ------------------EECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred ------------------EEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEE
Confidence 56999999999999999999995 67778889999999999999999999999999999999
Q ss_pred ec
Q 010816 498 WM 499 (500)
Q Consensus 498 W~ 499 (500)
|+
T Consensus 535 wd 536 (577)
T 2ymu_A 535 WN 536 (577)
T ss_dssp EC
T ss_pred Ee
Confidence 97
No 13
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=4.4e-45 Score=342.44 Aligned_cols=292 Identities=34% Similarity=0.611 Sum_probs=256.4
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
...++.||.+.|.+++|+|++++||+|+.|+.|+||++.+++....+.+|...|.+++|+|++++|++|+.|+.|++||+
T Consensus 15 ~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred eEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence 34567899999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
.+++... .+.+|...|.++.|.| +...+++|+.|+.|++||+++++++..+..|..+|.++.|++++ .+++++
T Consensus 95 ~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 95 SSGKCLK-TLKGHSNYVFCCNFNP-----QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp TTCCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEE-EEcCCCCCEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 9887543 4678999999999987 44689999999999999999999999999999999999999886 688999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|+.|++||+++++.+..+.
T Consensus 169 ~d~~i~~wd~~~~~~~~~~~------------------------------------------------------------ 188 (312)
T 4ery_A 169 YDGLCRIWDTASGQCLKTLI------------------------------------------------------------ 188 (312)
T ss_dssp TTSCEEEEETTTCCEEEEEC------------------------------------------------------------
T ss_pred CCCcEEEEECCCCceeeEEe------------------------------------------------------------
Confidence 99999999998765443211
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
..+...+.+++|+|++++|++++.|+.|++||+.+++++..+.+|......+..
T Consensus 189 ------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------- 242 (312)
T 4ery_A 189 ------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFA-------- 242 (312)
T ss_dssp ------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCE--------
T ss_pred ------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEE--------
Confidence 122345788999999999999999999999999999999999888764322110
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe--CCCcEE
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG--KDRVLK 496 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~--~D~~v~ 496 (500)
....+++.+|++|+.||.|++||+++++.+..+.+|.+.|.+++|+|+++.|++++ .|++|+
T Consensus 243 ----------------~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 243 ----------------NFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp ----------------EEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred ----------------EEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEE
Confidence 01246789999999999999999999999999999999999999999999999997 699999
Q ss_pred Eec
Q 010816 497 LWM 499 (500)
Q Consensus 497 iW~ 499 (500)
+|+
T Consensus 307 ~W~ 309 (312)
T 4ery_A 307 LWK 309 (312)
T ss_dssp EEE
T ss_pred Eec
Confidence 997
No 14
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-45 Score=359.68 Aligned_cols=323 Identities=22% Similarity=0.348 Sum_probs=282.1
Q ss_pred CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeC----CCCc------eeEEecC----------CCCCEEEEEEcCCCCE
Q 010816 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDL----NTQT------PMFKCTG----------HKNWVLCIAWSADGKH 164 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~----~~~~------~~~~~~~----------h~~~v~~v~~s~~~~~ 164 (500)
.|.+.|.+++|+|+++ +||+|+.|+.|++||+ .++. ....+.. |.+.|.+++|+|++++
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 122 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNS 122 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSE
T ss_pred eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCE
Confidence 3558999999999999 9999999999999999 8777 3444443 6889999999999999
Q ss_pred EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc--
Q 010816 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA-- 242 (500)
Q Consensus 165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~-- 242 (500)
|++++.|+.|++|| .+++.. ..+.+|...|.++.|.| ++..+++++.|+.|++||+.+++.+..+..+...
T Consensus 123 l~~~~~dg~i~i~~-~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 195 (425)
T 1r5m_A 123 IVTGVENGELRLWN-KTGALL-NVLNFHRAPIVSVKWNK-----DGTHIISMDVENVTILWNVISGTVMQHFELKETGGS 195 (425)
T ss_dssp EEEEETTSCEEEEE-TTSCEE-EEECCCCSCEEEEEECT-----TSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEeCCCeEEEEe-CCCCee-eeccCCCccEEEEEECC-----CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence 99999999999999 444433 35678999999999987 4568999999999999999999999888888776
Q ss_pred -------------EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCC
Q 010816 243 -------------VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (500)
Q Consensus 243 -------------v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (500)
+.++.|++++.+++++.|+.|++||+.+++.+..+..|...|.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~----------------- 258 (425)
T 1r5m_A 196 SINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT----------------- 258 (425)
T ss_dssp ----------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT-----------------
T ss_pred ceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC-----------------
Confidence 88999999999999999999999999999998889899999999998875
Q ss_pred HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
+..+++++.|+.|++||.... .....+.+|...|.+++|+|++ +|++++.|+.|++||+
T Consensus 259 -------------------~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 259 -------------------NKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSL 317 (425)
T ss_dssp -------------------TTEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred -------------------CCEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence 347899999999999998654 3455667899999999999999 9999999999999999
Q ss_pred CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc-------
Q 010816 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK------- 462 (500)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~------- 462 (500)
.+++.+..+..|..++.++ +|+|++++|++++.||.|++||+++++
T Consensus 318 ~~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 370 (425)
T 1r5m_A 318 KQNTLLALSIVDGVPIFAG---------------------------RISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLY 370 (425)
T ss_dssp TTTEEEEEEECTTCCEEEE---------------------------EECTTSSEEEEEETTSCEEEEECHHHHC------
T ss_pred CCCcEeEecccCCccEEEE---------------------------EEcCCCCEEEEEECCCeEEEEECCCCccceeeee
Confidence 9999999999999888877 569999999999999999999999887
Q ss_pred -------------ccccccCccc--CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 463 -------------LKQDLPGHAD--EVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 463 -------------~~~~~~~h~~--~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.+..+.+|.. .|.+++|+|++++|++++.||.|++|+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 371 GNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp --------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred cccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 7888899976 9999999999999999999999999973
No 15
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.5e-45 Score=342.51 Aligned_cols=284 Identities=28% Similarity=0.466 Sum_probs=239.1
Q ss_pred cccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCC-----CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 101 SATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNT-----QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~-----~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
..++.||.+.|.+++|+|++ ++|++|+.|++|++||+.+ +.++..+.+|...|.+++|+|++++|++|+.|++|
T Consensus 10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v 89 (319)
T 3frx_A 10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL 89 (319)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence 34688999999999999965 8999999999999999864 23456788999999999999999999999999999
Q ss_pred EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--
Q 010816 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-- 252 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-- 252 (500)
++||+.+++... .+.+|...|.++.|.| ++..+++|+.|++|++||++ +.++..+.+|...|.++.|.+..
T Consensus 90 ~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 90 RLWDVATGETYQ-RFVGHKSDVMSVDIDK-----KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp EEEETTTTEEEE-EEECCSSCEEEEEECT-----TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC---
T ss_pred EEEECCCCCeeE-EEccCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCC
Confidence 999999887543 5778999999999976 45689999999999999996 56777889999999999998743
Q ss_pred -----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 253 -----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 253 -----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
.+++++.|+.|++||+.+++..
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~----------------------------------------------------- 189 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIE----------------------------------------------------- 189 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEE-----------------------------------------------------
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhh-----------------------------------------------------
Confidence 4777777777777776554322
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
..+.+|...|.+++|+|+|++|++|+.||.|++||+.+++.+..+..+ .++.+
T Consensus 190 --------------------------~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~ 242 (319)
T 3frx_A 190 --------------------------ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DEVFS 242 (319)
T ss_dssp --------------------------EEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SCEEE
T ss_pred --------------------------eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-CcEEE
Confidence 223467888999999999999999999999999999999998888754 45665
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc--------cCcccCEEEEEE
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL--------PGHADEVFAVDW 479 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------~~h~~~V~~l~~ 479 (500)
+ +|+|++.+|++++.++ +++|++..+.....+ ..|...+.+++|
T Consensus 243 ~---------------------------~~sp~~~~la~~~~~~-i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 243 L---------------------------AFSPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp E---------------------------EECSSSSEEEEEETTE-EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred E---------------------------EEcCCCCEEEEEcCCC-cEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 5 6799999999888654 999999876554433 235668999999
Q ss_pred cCCCCEEEEEeCCCcEEEec
Q 010816 480 SPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 480 s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|||++|++|+.|++|++|+
T Consensus 295 spdg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEE
T ss_pred CCCCCEEEEeecCceEEEEE
Confidence 99999999999999999997
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.2e-45 Score=350.52 Aligned_cols=312 Identities=20% Similarity=0.326 Sum_probs=237.5
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC------CCeEEEEeCCCCCcccc-
Q 010816 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK------AGELQCWDPQTGKPSGN- 187 (500)
Q Consensus 115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~------d~~i~~wd~~~~~~~~~- 187 (500)
.+.+++.+ +.++.+.....|++....+ .+|+..|.+++|+|||++|++|+. |+.|++|+..++.....
T Consensus 12 d~g~~~~~-~~~~g~~~~~~w~~p~~~p----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~ 86 (357)
T 4g56_B 12 DLGTENLY-FQSNGSSKGSAWGRPVTAP----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESL 86 (357)
T ss_dssp ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGG
T ss_pred CCCccceE-EecCCCccccccCCCCCCc----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeE
Confidence 44444544 4555677889999865433 479999999999999999999997 78899999887754322
Q ss_pred --cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE----EecCccccEEEEEeCCCC-eEEEEeCC
Q 010816 188 --PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 188 --~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
...+|...|.+++|.|. ..+++++.||+|+|||+.++++.. ...+|...|.+++|++++ .|++|+.|
T Consensus 87 ~~~~~~~~~~V~~~~~s~d------~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d 160 (357)
T 4g56_B 87 CTAGVQTEAGVTDVAWVSE------KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD 160 (357)
T ss_dssp CSEEEECSSCEEEEEEETT------TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred ecccCCCCCCEEEEEEcCC------CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 23468888999999873 368889999999999998876543 345899999999999987 68899999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
++|++||+.+++.+..+..|...|.+++++++. ...+++++.|++
T Consensus 161 g~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~-----------------------------------~~~~~s~~~dg~ 205 (357)
T 4g56_B 161 FSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGK-----------------------------------DTIFLSCGEDGR 205 (357)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECTTC-----------------------------------SSCEEEEETTSC
T ss_pred CeEEEEECCCCcEEEEEcCCCCCEEEEEEccCC-----------------------------------CceeeeeccCCc
Confidence 999999999999999999999999999987642 235889999999
Q ss_pred EEEEcCCCCCCCc-eeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 341 MFLWEPAVSKQPK-TRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 341 v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
|++||+....... .....|...+.+++|+|+ +.+||+|+.|+.|++||+++++++..+.+|..+|.++
T Consensus 206 v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l---------- 275 (357)
T 4g56_B 206 ILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGL---------- 275 (357)
T ss_dssp EEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEE----------
T ss_pred eEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEE----------
Confidence 9999987654432 234567788999999997 5789999999999999999999999999999999887
Q ss_pred CCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcC-CCCEEEEEeCCCcEE
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLK 496 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~ 496 (500)
+|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|++|+|+| |+++|+|||.|++|+
T Consensus 276 -----------------~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 276 -----------------AYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp -----------------EECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred -----------------EEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 568887 68999999999999999999887665 7999999999998 799999999999999
Q ss_pred EecC
Q 010816 497 LWMG 500 (500)
Q Consensus 497 iW~~ 500 (500)
+|+.
T Consensus 338 iW~~ 341 (357)
T 4g56_B 338 HHHL 341 (357)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9973
No 17
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-46 Score=363.81 Aligned_cols=327 Identities=16% Similarity=0.275 Sum_probs=277.8
Q ss_pred cccEEEEEEcCCCC-eEEEE----------eCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 108 TEAVLSVAFSPDGR-QLASG----------SGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 108 ~~~V~~~~~sp~~~-~lat~----------~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
...|.+++|+|+++ +||+| +.|+.|+|||+.++.. ......|...|.+++|+|++++|++++.|+.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v 91 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSL 91 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCE
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeE
Confidence 44678899999987 99999 8999999999987652 22223689999999999999999999999999
Q ss_pred EEEeCCC---CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe------EEEE---ecCcccc
Q 010816 175 QCWDPQT---GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK------CVIC---LSGHTLA 242 (500)
Q Consensus 175 ~~wd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~------~~~~---~~~h~~~ 242 (500)
++||+.+ +......+.+|...|.++.|+|. ....+++++.|+.|++||+.+++ .... +.+|...
T Consensus 92 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 92 ELYSTNEANNAINSMARFSNHSSSVKTVKFNAK----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp EEECCSSTTSCCCEEEECCCSSSCCCEEEECSS----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred EEeecccccccccchhhccCCccceEEEEEcCC----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999987 23233457789999999999873 24689999999999999998876 3332 3678999
Q ss_pred EEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecC------CceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 243 VTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGH------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 243 v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
|.+++|+++ ..+++++.|+.|++||+++++.+..+..+ ...+.+++++++.
T Consensus 168 v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------- 226 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKN--------------------- 226 (416)
T ss_dssp CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSC---------------------
T ss_pred eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCC---------------------
Confidence 999999987 37889999999999999999998888776 7789999988752
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeCCC---eEEEEcCCCCCCCceeee-cccCcEEEEEECC-CCCEEEEEeCCCcEEEEeC
Q 010816 315 KAALERYNKIKGNAPERLVSGSDDF---TMFLWEPAVSKQPKTRMT-GHQQLVNHVYFSP-DGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~d~---~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~ 389 (500)
...+++++.|+ .|++||+.....+...+. +|...|.+++|+| ++++|++++.||.|++||+
T Consensus 227 --------------~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 227 --------------STRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp --------------TTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred --------------CCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 24789999998 999999987656666777 8999999999999 9999999999999999999
Q ss_pred CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC-CEEEEEECCCcEEEEECCCcccccccc
Q 010816 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS-RLLLSGSKDSTLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~ 468 (500)
.+++.+..+.+|...+.++ +|+|++ .+|++++.|+.|++||+...+......
T Consensus 293 ~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~ 345 (416)
T 2pm9_A 293 ESAEQLSQFPARGNWCFKT---------------------------KFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQ 345 (416)
T ss_dssp SSCCEEEEEECSSSCCCCE---------------------------EECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-
T ss_pred CCCccceeecCCCCceEEE---------------------------EECCCCCCEEEEEecCCcEEEEEccCCCCCcccc
Confidence 9999999999999887766 679998 899999999999999998765432221
Q ss_pred -----------------------------------CcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 469 -----------------------------------GHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 469 -----------------------------------~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.|...+.+++|+|||++|++++.|++|+||+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 346 ETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ---------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred cccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 16677889999999999999999999999973
No 18
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-43 Score=337.53 Aligned_cols=294 Identities=24% Similarity=0.415 Sum_probs=229.8
Q ss_pred cccccCCcccEEEEEE-----cC-CCCeEEEEeCCCcEEEEeCCCC-------ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816 101 SATIAGHTEAVLSVAF-----SP-DGRQLASGSGDTTVRLWDLNTQ-------TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~-----sp-~~~~lat~~~d~~i~iwd~~~~-------~~~~~~~~h~~~v~~v~~s~~~~~l~s 167 (500)
..++.||.+.|++++| ++ ++++||||+.|++|+|||+.+. .+...+.+|...|.+++|+|++.+|++
T Consensus 14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s 93 (343)
T 2xzm_R 14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAIS 93 (343)
T ss_dssp EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEE
T ss_pred eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEE
Confidence 4567899999999999 77 8999999999999999998753 345678899999999999999999999
Q ss_pred EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---CccccEE
Q 010816 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---GHTLAVT 244 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---~h~~~v~ 244 (500)
|+.|++|++||+++++... .+.+|...|.++.|+| ++..+++++.|++|++||+... +..... +|...|.
T Consensus 94 ~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~v~~sp-----~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYK-RFVGHQSEVYSVAFSP-----DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVS 166 (343)
T ss_dssp EETTSEEEEEETTSSCEEE-EEECCCSCEEEEEECS-----STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEE
T ss_pred EcCCCcEEEEECCCCcEEE-EEcCCCCcEEEEEECC-----CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceee
Confidence 9999999999999887643 4678999999999987 4568999999999999999743 333333 7888999
Q ss_pred EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++.|++++... .. +.
T Consensus 167 ~~~~~~~~~~~----------------~~---------------~~---------------------------------- 181 (343)
T 2xzm_R 167 CVRYSPIMKSA----------------NK---------------VQ---------------------------------- 181 (343)
T ss_dssp EEEECCCCCSC----------------SC---------------CC----------------------------------
T ss_pred eeeeccccccc----------------cc---------------cC----------------------------------
Confidence 99998864100 00 00
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcc
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVG 403 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~ 403 (500)
.....+++++.|++|++||.. ......+.+|...|.+++|+|+|++||+|+.||.|++||+.. ......+. +..
T Consensus 182 --~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~ 256 (343)
T 2xzm_R 182 --PFAPYFASVGWDGRLKVWNTN--FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGS 256 (343)
T ss_dssp --SSCCEEEEEETTSEEEEEETT--TEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSS
T ss_pred --CCCCEEEEEcCCCEEEEEcCC--CceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCC
Confidence 001245566666666666621 222344568889999999999999999999999999999944 33333332 333
Q ss_pred cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc--cc-----------cCc
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DL-----------PGH 470 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~-----------~~h 470 (500)
.+.++ +|+|++.+++++ .|+.|++||+.+++... .+ .+|
T Consensus 257 ~v~~v---------------------------~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (343)
T 2xzm_R 257 TINQI---------------------------AFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK 308 (343)
T ss_dssp CEEEE---------------------------EECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS
T ss_pred cEEEE---------------------------EECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC
Confidence 45544 679999888755 57789999998765433 22 278
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 471 ADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...|.+++|+|+|++|++|+.||+|++|+
T Consensus 309 ~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 309 NPQCTSLAWNALGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp CCCEEEEEECSSSCCEEEEETTSEEEEEE
T ss_pred CCceEEEEECCCCCeEEEecCCceEEEEE
Confidence 88999999999999999999999999997
No 19
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-43 Score=363.21 Aligned_cols=365 Identities=18% Similarity=0.312 Sum_probs=298.6
Q ss_pred cccccccccCCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCC-CCEEEEEeCC
Q 010816 97 VNRCSATIAGHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSAD-GKHLVSGSKA 171 (500)
Q Consensus 97 ~~~~~~~~~gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~-~~~l~s~~~d 171 (500)
.......+.+|.+.|.+++|+|+++ ++++++.|+.|++||+.+++.+..+.+|.. .|.+++|+|+ +++|++++.|
T Consensus 149 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 228 (615)
T 1pgu_A 149 SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD 228 (615)
T ss_dssp TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT
T ss_pred CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC
Confidence 3445667889999999999999998 899999999999999999999999999999 9999999999 9999999999
Q ss_pred CeEEEEeCCCCCccccccc---CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc----cccEE
Q 010816 172 GELQCWDPQTGKPSGNPLS---GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH----TLAVT 244 (500)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h----~~~v~ 244 (500)
+.|++||+.+++....... +|...|.++.|. ++..+++++.|+.|++||+++++++..+..+ ...+.
T Consensus 229 g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 229 RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL------DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES------SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred CeEEEEECCCCCEeEEecccccccCCceEEEEEc------CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 9999999998876654325 899999999985 3468999999999999999999998888776 46788
Q ss_pred EEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH--------------
Q 010816 245 CVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP-------------- 310 (500)
Q Consensus 245 ~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 310 (500)
++.|..+..+++++.|+.|++||+.+++.+..+..|...|.++++ ++ +..+..+.....+...
T Consensus 303 ~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~ 379 (615)
T 1pgu_A 303 GVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP--LISGSYDGRIMEWSSSSMHQDHSNLIVSLD 379 (615)
T ss_dssp EEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT--TEEEETTSCEEETTTTEEECCCCSCEEEEE
T ss_pred EEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC--cEEECCCCeEEEEEchhhcCcccCceEEEE
Confidence 888876678999999999999999999999999888888888888 55 3332222111100000
Q ss_pred ---HHHH-----HHHHHh---------------------------------------------------hhhhcCCCCcE
Q 010816 311 ---EEMK-----KAALER---------------------------------------------------YNKIKGNAPER 331 (500)
Q Consensus 311 ---~~~~-----~~~~~~---------------------------------------------------~~~~~~~~~~~ 331 (500)
.... ...+.. ...+... +..
T Consensus 380 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 458 (615)
T 1pgu_A 380 NSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS-QNY 458 (615)
T ss_dssp CCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC-SSE
T ss_pred ECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc-CCE
Confidence 0000 000000 0000000 457
Q ss_pred EEEeeC-CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC-CcccEEEEE
Q 010816 332 LVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG-HVGPVYQIR 409 (500)
Q Consensus 332 ~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~ 409 (500)
+++++. |+.|++||..........+.+|...|.+++|+|+|++|++++.||.|++||+.+++.+..+.+ |..+|.++
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~- 537 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI- 537 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE-
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEE-
Confidence 788888 899999987643221145677899999999999999999999999999999999999998888 99998887
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcC----------CCCEEEEEECCCcEEEEECCCc-cccccccCcccCEEEEE
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSA----------DSRLLLSGSKDSTLKVWDIRTQ-KLKQDLPGHADEVFAVD 478 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----------~~~~l~s~s~d~~v~iwd~~~~-~~~~~~~~h~~~V~~l~ 478 (500)
+|+| ++++|++|+.|+.|++||+.++ +.+..+.+|.+.|++++
T Consensus 538 --------------------------~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~ 591 (615)
T 1pgu_A 538 --------------------------SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLL 591 (615)
T ss_dssp --------------------------EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEE
T ss_pred --------------------------EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEE
Confidence 5688 9999999999999999999987 77888999999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEec
Q 010816 479 WSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 479 ~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+|+++ |++++.|++|++|+
T Consensus 592 ~s~~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 592 WETPST-LVSSGADACIKRWN 611 (615)
T ss_dssp EEETTE-EEEEETTSCEEEEE
T ss_pred EcCCCC-eEEecCCceEEEEe
Confidence 999999 99999999999997
No 20
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7.7e-44 Score=344.83 Aligned_cols=287 Identities=31% Similarity=0.523 Sum_probs=242.5
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCC------------------CCEEEEEEcCCCCEEEE
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK------------------NWVLCIAWSADGKHLVS 167 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~------------------~~v~~v~~s~~~~~l~s 167 (500)
+|.+.|.+++|+|||++||+|+ |++++||++.++..+..+.+|. ..|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 7899999999988877766553 24999999999999999
Q ss_pred EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816 168 GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (500)
|+.|++|++||+.+++... .+.+|...|.++.|.| ++..+++++.|++|++||++++++...+. +...+.+++
T Consensus 141 ~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~p-----~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~ 213 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVM-ILQGHEQDIYSLDYFP-----SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVA 213 (393)
T ss_dssp EETTSCEEEEETTTTEEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEE
T ss_pred EcCCCeEEEEECCCCcEEE-EEccCCCCEEEEEEcC-----CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEE
Confidence 9999999999999876543 5788999999999987 44689999999999999999999887765 456789999
Q ss_pred eCC-CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhc
Q 010816 248 WGG-DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIK 325 (500)
Q Consensus 248 ~~~-~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (500)
|++ ++ .|++|+.|+.|++||+++++.+..+...
T Consensus 214 ~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~--------------------------------------------- 248 (393)
T 1erj_A 214 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSE--------------------------------------------- 248 (393)
T ss_dssp ECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC-----------------------------------------------
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcEEEeeccc---------------------------------------------
Confidence 987 54 6889999999999999887655433210
Q ss_pred CCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC------------c
Q 010816 326 GNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG------------K 393 (500)
Q Consensus 326 ~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~------------~ 393 (500)
.....+|...|.+++|+|+|++|++|+.|+.|++||+.+. .
T Consensus 249 ---------------------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~ 301 (393)
T 1erj_A 249 ---------------------------NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301 (393)
T ss_dssp -------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred ---------------------------ccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence 0112368889999999999999999999999999998763 3
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccC
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADE 473 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~ 473 (500)
+...+.+|...|.++ +|+|++.+|++|+.|+.|++||+++++.+..+.+|.+.
T Consensus 302 ~~~~~~~h~~~v~~~---------------------------~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~ 354 (393)
T 1erj_A 302 CEVTYIGHKDFVLSV---------------------------ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS 354 (393)
T ss_dssp EEEEEECCSSCEEEE---------------------------EECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred ceEEEecccCcEEEE---------------------------EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC
Confidence 455667777777666 56899999999999999999999999999999999999
Q ss_pred EEEEEEcC------CCCEEEEEeCCCcEEEec
Q 010816 474 VFAVDWSP------DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 474 V~~l~~s~------dg~~l~s~~~D~~v~iW~ 499 (500)
|.+++|++ ++++|+|||.|++|+||+
T Consensus 355 v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 355 VISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp EEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred EEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 99999986 688999999999999997
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-44 Score=336.77 Aligned_cols=289 Identities=22% Similarity=0.392 Sum_probs=226.7
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEe-cC-CCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKC-TG-HKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~-~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
+..++.+|.++|++++|+|+ +||+|+.|++|+|||+.++. ....+ .+ |...|.+++|+|++++|++|+.|++|+
T Consensus 6 ~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~ 83 (330)
T 2hes_X 6 LIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVS 83 (330)
T ss_dssp EEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred cceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEE
Confidence 34567899999999999998 99999999999999998753 33444 34 999999999999999999999999999
Q ss_pred EEeCCCCC------cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----CeEEEEecCccccEEE
Q 010816 176 CWDPQTGK------PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----RKCVICLSGHTLAVTC 245 (500)
Q Consensus 176 ~wd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----~~~~~~~~~h~~~v~~ 245 (500)
+||...+. .....+.+|...|.+++|+| ++.+|++|+.|++|++||++. .+++..+.+|...|.+
T Consensus 84 iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~ 158 (330)
T 2hes_X 84 IWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-----DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKH 158 (330)
T ss_dssp EEEC-------CCCEEEEEEC----CEEEEEECT-----TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEE
T ss_pred EEEcccCcCccccceeEEEEcCCCCcEEEEEECC-----CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEE
Confidence 99986432 11234678999999999987 456899999999999999943 3577888999999999
Q ss_pred EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
+.|+|++ .|++|+.|++|++||..++...
T Consensus 159 v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~-------------------------------------------------- 188 (330)
T 2hes_X 159 VIWHPSEALLASSSYDDTVRIWKDYDDDWE-------------------------------------------------- 188 (330)
T ss_dssp EEECSSSSEEEEEETTSCEEEEEEETTEEE--------------------------------------------------
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCCee--------------------------------------------------
Confidence 9999876 6889999999999986543100
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC--CCEEEEEeCCCcEEEEeCCCC--------ce
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD--GQWVASASFDKSIKLWNGTTG--------KF 394 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~--g~~lasgs~Dg~i~lwd~~~~--------~~ 394 (500)
....+.+|...|.+++|+|+ +.+|++|+.|++|++||+.++ .+
T Consensus 189 ---------------------------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 241 (330)
T 2hes_X 189 ---------------------------CVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVC 241 (330)
T ss_dssp ---------------------------EEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEE
T ss_pred ---------------------------EEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEE
Confidence 01224477888999999998 678999999999999998654 33
Q ss_pred EEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc--cc-ccccCc
Q 010816 395 VAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK--LK-QDLPGH 470 (500)
Q Consensus 395 ~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~-~~~~~h 470 (500)
...+.+ |...|+++ +|++++ +|++++.||.|++||..+++ .. ..+.+|
T Consensus 242 ~~~~~~~h~~~v~~v---------------------------~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h 293 (330)
T 2hes_X 242 EAILPDVHKRQVYNV---------------------------AWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH 293 (330)
T ss_dssp EEECCSCCSSCEEEE---------------------------EECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT
T ss_pred eeecccccccceEEE---------------------------EEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc
Confidence 444554 77777776 567655 89999999999999987763 22 234678
Q ss_pred cc-CEEEEEEcC--CCCEEEEEeCCCcEEEecC
Q 010816 471 AD-EVFAVDWSP--DGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 471 ~~-~V~~l~~s~--dg~~l~s~~~D~~v~iW~~ 500 (500)
.. .|.+++|+| +++.|++||.|++|+||+.
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred ccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 87 899999999 7899999999999999973
No 22
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-43 Score=370.32 Aligned_cols=360 Identities=14% Similarity=0.146 Sum_probs=274.4
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
..|..+|.+++|+| +++|++++.|++|+|||+.+++++..+. |...|.+++|+|++++|++|+.||+|++||+.+++.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~ 132 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL 132 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 35888999999999 8899999999999999999998887775 778999999999999999999999999999988764
Q ss_pred cc----------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---------------
Q 010816 185 SG----------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH--------------- 239 (500)
Q Consensus 185 ~~----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h--------------- 239 (500)
.. ..+.+|...|.+++|+|.. ...+++|+.|+.| +||+++++++..+.+|
T Consensus 133 ~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~----~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 133 SSFKLDNLQKSSFFPAARLSPIVSIQWNPRD----IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp EEEEECCHHHHHTCSSSCCCCCCEEEEETTE----EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTT
T ss_pred ccceeccccccccccccCCCCeEEEEEccCC----CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccc
Confidence 21 2357799999999999842 2478999999999 9999999998888766
Q ss_pred ---cccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEE--ee---c-------------CCceEEEEEecC----c-
Q 010816 240 ---TLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRE--LK---G-------------HGHWVNSLALST----E- 292 (500)
Q Consensus 240 ---~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~--~~---~-------------~~~~v~~~~~~~----~- 292 (500)
...|.+++|++++ .|++|+.|++|++||+++++.+.. +. . +..+|.++++++ +
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~ 287 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEY 287 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCC
Confidence 4779999999987 589999999999999999887653 21 1 234788888842 2
Q ss_pred -ceeeeccccCCC---------------------------------C-CC--------------C--CHH----------
Q 010816 293 -YALRTGAFDHTG---------------------------------K-QY--------------S--SPE---------- 311 (500)
Q Consensus 293 -~~~~~~~~~~~~---------------------------------~-~~--------------~--~~~---------- 311 (500)
..+..++.+... . .+ . .+.
T Consensus 288 ~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l 367 (902)
T 2oaj_A 288 TSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLI 367 (902)
T ss_dssp EEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEE
T ss_pred CEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeE
Confidence 112222111000 0 00 0 000
Q ss_pred -----------------------------------------------HHHHHHHHh----hhhhc-----------CCCC
Q 010816 312 -----------------------------------------------EMKKAALER----YNKIK-----------GNAP 329 (500)
Q Consensus 312 -----------------------------------------------~~~~~~~~~----~~~~~-----------~~~~ 329 (500)
......... ...+. ...+
T Consensus 368 ~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg 447 (902)
T 2oaj_A 368 LLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYG 447 (902)
T ss_dssp EEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEE
T ss_pred EEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccC
Confidence 000000000 00000 1124
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCc-eee---------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc------
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPK-TRM---------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK------ 393 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~-~~~---------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~------ 393 (500)
..+++|+.|++|++||+....... ..+ .+|...|.+|+|+|||++||+|+.||+|+|||+.+++
T Consensus 448 ~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~ 527 (902)
T 2oaj_A 448 TAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVEN 527 (902)
T ss_dssp EEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC-----
T ss_pred cEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccc
Confidence 579999999999999986553211 111 1788999999999999999999999999999988763
Q ss_pred ---------------------------------------eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816 394 ---------------------------------------FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434 (500)
Q Consensus 394 ---------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (500)
++.++.+|.++|+++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sv-------------------------- 581 (902)
T 2oaj_A 528 RPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI-------------------------- 581 (902)
T ss_dssp ----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEE--------------------------
T ss_pred cCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEE--------------------------
Confidence 244555566666555
Q ss_pred eEEcCCCCEEEEEECCCcEEEEECCCcccc-----cccc-CcccCEEEEEEc-----CCC---CEEEEEeCCCcEEEec
Q 010816 435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLK-----QDLP-GHADEVFAVDWS-----PDG---EKVASGGKDRVLKLWM 499 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~-----~~~~-~h~~~V~~l~~s-----~dg---~~l~s~~~D~~v~iW~ 499 (500)
+|||+| +||+|+.|++|+|||++++..+ ..+. +|.+.|++|+|+ ||| ++|++|+.|++|++|+
T Consensus 582 -afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd 658 (902)
T 2oaj_A 582 -NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYK 658 (902)
T ss_dssp -EECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEE
T ss_pred -EecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEE
Confidence 679999 9999999999999999887654 3454 899999999999 886 8999999999999997
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.1e-43 Score=336.78 Aligned_cols=287 Identities=17% Similarity=0.240 Sum_probs=235.6
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeC------CCcEEEEeCCCCcee----EEecCCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSG------DTTVRLWDLNTQTPM----FKCTGHKNWVLCIAWSADGKHLVSGSKAGEL 174 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~------d~~i~iwd~~~~~~~----~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i 174 (500)
.+|.+.|.+++|+|||++||+|+. |++|++|+..++.+. ....+|...|.+++|+|++. +++++.||+|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v 117 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV 117 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence 479999999999999999999997 788999998765432 33457899999999999975 5677889999
Q ss_pred EEEeCCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC
Q 010816 175 QCWDPQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD 251 (500)
Q Consensus 175 ~~wd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~ 251 (500)
++||+.+++... ....+|...|.+++|+| ++.++++|+.|+.|++||+++++++..+.+|...|.+++|+++
T Consensus 118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-----dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-----DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp EEC--------CCCCEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEeeccccceeEEEeeccCCCCCCEEEEEECC-----CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 999998876432 23457999999999987 4568999999999999999999999999999999999999876
Q ss_pred C--eEEEEeCCCeEEEEeCCCCeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 252 G--VIYTGSQDCTIKVWETTQGKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 252 ~--~l~t~~~dg~i~lwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
+ .+++++.|++|++||+++++....+. .+...+.+++++|+.
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~---------------------------------- 238 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEK---------------------------------- 238 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTS----------------------------------
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcc----------------------------------
Confidence 4 68999999999999999988766543 456678888887642
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
+..+++|+.|+.|++||+.... ....+.+|...|++++|+|++ ++||+|+.|++|+|||+++++++..+ +|.+.|+
T Consensus 239 -~~~la~g~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~ 315 (357)
T 4g56_B 239 -DDTFACGDETGNVSLVNIKNPD-SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVT 315 (357)
T ss_dssp -TTEEEEEESSSCEEEEESSCGG-GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEE
T ss_pred -cceEEEeecccceeEEECCCCc-EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEE
Confidence 3478999999999999986543 455678999999999999987 68999999999999999999887654 7999998
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCc
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
++ +|+| ++.+|++|+.|++|++|++.+.
T Consensus 316 ~v---------------------------afsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 316 GV---------------------------AWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EE---------------------------EECSSSTTEEEEEETTSCEEEEECC--
T ss_pred EE---------------------------EEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 87 5688 7999999999999999998654
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=8.1e-43 Score=330.30 Aligned_cols=320 Identities=16% Similarity=0.275 Sum_probs=275.1
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
|.++|.+++|+|||++++++..++.+.+|+...........+|...|.+++|+|++++|++++ |+.|++||+.+++...
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 467899999999999999998888777776665555555568999999999999999999999 9999999998775432
Q ss_pred ccc----cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816 187 NPL----SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (500)
Q Consensus 187 ~~~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~-~l~t~~~ 259 (500)
... .+|...+.++.|.| ++..+++++.|+.|++||+..++ ....+.+|...|.++.|++++ .+++++.
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLP-----DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECT-----TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeecccccCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 221 27889999999987 45689999999999999999877 667788999999999999876 6889999
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
|+.|++||+++++.+..+..|...+.+++++++ +..+++++.|+
T Consensus 162 dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~------------------------------------~~~l~~~~~dg 205 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQGHTDGASCIDISND------------------------------------GTKLWTGGLDN 205 (337)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------------------------------SSEEEEEETTS
T ss_pred CCcEEEEeCCCCceeeeeecccCceEEEEECCC------------------------------------CCEEEEEecCC
Confidence 999999999999999999999999999998875 35789999999
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
.|++||+..... .....+...+.+++|+|++++|++++.|+.|++||+.+++.. .+..|..++.++
T Consensus 206 ~i~~~d~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~----------- 271 (337)
T 1gxr_A 206 TVRSWDLREGRQ--LQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSL----------- 271 (337)
T ss_dssp EEEEEETTTTEE--EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEE-----------
T ss_pred cEEEEECCCCce--EeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEE-----------
Confidence 999999865432 223357788999999999999999999999999999988754 567788888777
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|+|++++|++++.||.|++||+.+++.... ..|...|.+++|+|++++|++++.|+.|++|+
T Consensus 272 ----------------~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 272 ----------------KFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ----------------EECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ----------------EECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 5699999999999999999999999887644 35788999999999999999999999999997
No 25
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=7.6e-42 Score=336.81 Aligned_cols=317 Identities=27% Similarity=0.515 Sum_probs=278.8
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.||.+.|.. ++++++++|++|+.||+|++||+.+++.+..+.+|...|.++.|+ +++|++|+.||+|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 3467899997643 355679999999999999999999999999999999999999997 5699999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD 260 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d 260 (500)
+++... .+.+|...|.++.|.+ ..+++|+.||.|++||+++++++..+.+|...|.++.|. ...+++|+.|
T Consensus 188 ~~~~~~-~~~~h~~~v~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d 258 (445)
T 2ovr_B 188 TGECIH-TLYGHTSTVRCMHLHE-------KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYD 258 (445)
T ss_dssp TTEEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETT
T ss_pred cCcEEE-EECCCCCcEEEEEecC-------CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC-CCEEEEEcCC
Confidence 887543 4678999999999853 479999999999999999999999999999999999994 4579999999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
|.|++||+++++.+..+..|...|.++.+. +..+++++.|+.
T Consensus 259 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--------------------------------------~~~l~~~~~d~~ 300 (445)
T 2ovr_B 259 FMVKVWDPETETCLHTLQGHTNRVYSLQFD--------------------------------------GIHVVSGSLDTS 300 (445)
T ss_dssp SCEEEEEGGGTEEEEEECCCSSCEEEEEEC--------------------------------------SSEEEEEETTSC
T ss_pred CEEEEEECCCCcEeEEecCCCCceEEEEEC--------------------------------------CCEEEEEeCCCe
Confidence 999999999999999999999999888763 246899999999
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC---CcccEEEEEeeeeeeec
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG---HVGPVYQIRFELIYCFR 417 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~ 417 (500)
|++||+... .....+.+|...+.++.+ ++++|++|+.||.|++||+.+++.+..+.+ |..+|.++
T Consensus 301 i~i~d~~~~-~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~--------- 368 (445)
T 2ovr_B 301 IRVWDVETG-NCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL--------- 368 (445)
T ss_dssp EEEEETTTC-CEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE---------
T ss_pred EEEEECCCC-CEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE---------
Confidence 999998654 345567789999998887 467999999999999999999999999887 77778776
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-----cCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL-----PGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
+| ++++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+|++..|++|+.|
T Consensus 369 ------------------~~--~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~d 428 (445)
T 2ovr_B 369 ------------------QF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428 (445)
T ss_dssp ------------------EE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSS
T ss_pred ------------------EE--CCCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccC
Confidence 33 4689999999999999999999887766 5688899999999999999999999
Q ss_pred Cc----EEEec
Q 010816 493 RV----LKLWM 499 (500)
Q Consensus 493 ~~----v~iW~ 499 (500)
|+ |.+|+
T Consensus 429 g~~~~~l~v~d 439 (445)
T 2ovr_B 429 GTEETKLLVLD 439 (445)
T ss_dssp SSSCCEEEEEE
T ss_pred CCCccEEEEEE
Confidence 98 99987
No 26
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.3e-43 Score=369.68 Aligned_cols=188 Identities=12% Similarity=0.117 Sum_probs=158.1
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.||.+.|++++|+|++++||+|+.||+|+||+..+......+ .|..+|.+++|+| |++|++++.|++|++||+.+++.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~ 91 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV 91 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE
Confidence 489999999999999999999999999999999877665544 4888999999999 88999999999999999998876
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE-----------EEecCccccEEEEEeCCC--
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV-----------ICLSGHTLAVTCVKWGGD-- 251 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~-----------~~~~~h~~~v~~~~~~~~-- 251 (500)
... + .|...|.++.|+| ++..+++|+.||.|++||++++++. ..+.+|..+|.+++|+|+
T Consensus 92 ~~~-~-~~~~~V~~v~~sp-----~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~ 164 (902)
T 2oaj_A 92 LTT-V-FVPGKITSIDTDA-----SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI 164 (902)
T ss_dssp EEE-E-ECSSCEEEEECCT-----TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred EEE-E-cCCCCEEEEEECC-----CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence 543 2 2667899999876 4568999999999999999988764 234679999999999996
Q ss_pred CeEEEEeCCCeEEEEeCCCCeeEEEeecC------------------CceEEEEEecCcce-eeeccccC
Q 010816 252 GVIYTGSQDCTIKVWETTQGKLIRELKGH------------------GHWVNSLALSTEYA-LRTGAFDH 302 (500)
Q Consensus 252 ~~l~t~~~dg~i~lwd~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~-~~~~~~~~ 302 (500)
+.+++|+.|+.| +||+++++.++.+..| ...|.+++++|+.. +.++..|.
T Consensus 165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 478999999999 9999999988887655 46799999998753 34444443
No 27
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.5e-42 Score=381.17 Aligned_cols=356 Identities=22% Similarity=0.357 Sum_probs=299.7
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
..+.+|.+.|++++|+|++++||+|+.||+|+|||+.++..+..+.+|...|.+++|+|++++|++++.|++|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
++... .+.+|...|.++.|.|.. +...+++|+.|+.|++||+.+++++..+.+|...|.++.|++++ .+++++.|
T Consensus 689 ~~~~~-~~~~~~~~v~~~~~~~~~---~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKLVH-TYDEHSEQVNCCHFTNKS---NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp CCEEE-EEECCSSCEEEEEECSSS---SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CceEE-EEcCCCCcEEEEEEecCC---CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 87654 467899999999998732 33578999999999999999999999999999999999999987 68899999
Q ss_pred CeEEEEeCCCCeeEEEeecCCc-------------eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 261 CTIKVWETTQGKLIRELKGHGH-------------WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
|.|++||+.+++....+..... .+.++++++
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------------------------------------ 808 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA------------------------------------ 808 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT------------------------------------
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC------------------------------------
Confidence 9999999998887766543221 122222222
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
.+..+++++ ++.+.+||............+|...|.+++|+|+++++++++.||.|++||..++..+..+.+|.+.|.+
T Consensus 809 dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~ 887 (1249)
T 3sfz_A 809 DGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHG 887 (1249)
T ss_dssp TSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEc-CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEE
Confidence 234566655 7899999987665555555689999999999999999999999999999999999999999999999999
Q ss_pred EEeeeee----eecCCCCceeeee-------------------------------------------------cccccee
Q 010816 408 IRFELIY----CFRYPSNFYCVVD-------------------------------------------------MSCCMSL 434 (500)
Q Consensus 408 ~~~~~~~----~~~~~~~~~~~~~-------------------------------------------------~~~~~~~ 434 (500)
+.|..-. +.. ..+...+.+ ....+..
T Consensus 888 v~~spdg~~l~s~s-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 966 (1249)
T 3sfz_A 888 VMFSPDGSSFLTAS-DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSC 966 (1249)
T ss_dssp EEECTTSSEEEEEE-TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEE
T ss_pred EEECCCCCEEEEEe-CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEE
Confidence 9884210 000 000000110 1123556
Q ss_pred eEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++|+|+++++++|+.||.|++||+.+++....+.+|...|.+++|+|+|++|++++.|++|++|+
T Consensus 967 ~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 967 CCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp EEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 78999999999999999999999999999889999999999999999999999999999999997
No 28
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-42 Score=382.69 Aligned_cols=413 Identities=22% Similarity=0.333 Sum_probs=324.1
Q ss_pred eeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010816 79 EKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC 146 (500)
Q Consensus 79 ~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~ 146 (500)
..+..+.|.|.. ..+++.. ..+..++.+|.+.|.+++|+|++++||+|+.|++|+|||+.+++.+..+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 695 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEE
Confidence 445666666543 2344443 2345678899999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEE
Q 010816 147 TGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARI 224 (500)
Q Consensus 147 ~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i 224 (500)
.+|...|.+++|+| ++.++++|+.|+.|++||+.+++... .+.+|...|.++.|+| ++..+++++.||.|++
T Consensus 696 ~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~-~~~~h~~~v~~~~~sp-----~~~~l~s~s~dg~v~v 769 (1249)
T 3sfz_A 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN-TMFGHTNSVNHCRFSP-----DDELLASCSADGTLRL 769 (1249)
T ss_dssp ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE-EECCCSSCEEEEEECS-----STTEEEEEESSSEEEE
T ss_pred cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh-eecCCCCCEEEEEEec-----CCCEEEEEECCCeEEE
Confidence 99999999999999 45689999999999999999887653 4678999999999987 4568999999999999
Q ss_pred EECCCCeEEEEe-------------------------------------------------------cCccccEEEEEeC
Q 010816 225 WDVSLRKCVICL-------------------------------------------------------SGHTLAVTCVKWG 249 (500)
Q Consensus 225 wd~~~~~~~~~~-------------------------------------------------------~~h~~~v~~~~~~ 249 (500)
||+.+++....+ .+|...|.+++|+
T Consensus 770 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s 849 (1249)
T 3sfz_A 770 WDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS 849 (1249)
T ss_dssp EEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC
T ss_pred EeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc
Confidence 998776543322 1677788899999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce-eeeccccCCCCCCCCHHHHHHHHHH--------
Q 010816 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA-LRTGAFDHTGKQYSSPEEMKKAALE-------- 319 (500)
Q Consensus 250 ~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------- 319 (500)
+++ .+++++.|+.|++||+.++..+..+.+|..+|.+++++++.. +.++..+.....+............
T Consensus 850 p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 929 (1249)
T 3sfz_A 850 PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929 (1249)
T ss_dssp SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEE
Confidence 876 588899999999999999999999999999999999998764 4444444443333211100000000
Q ss_pred ---------------------------------hh-hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEE
Q 010816 320 ---------------------------------RY-NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNH 365 (500)
Q Consensus 320 ---------------------------------~~-~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~ 365 (500)
.. .......+..+++|+.||.|++||.... .....+.+|...|.+
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A 930 FQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp EETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCCC
T ss_pred EcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceEE
Confidence 00 0001234567899999999999998654 345567789999999
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee--------------eecCCCCceeeeecccc
Q 010816 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY--------------CFRYPSNFYCVVDMSCC 431 (500)
Q Consensus 366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 431 (500)
++|+|+|++|++++.||.|++||+.+++... +.+|...+.++.+..-. .................
T Consensus 1009 l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~ 1087 (1249)
T 3sfz_A 1009 IQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT 1087 (1249)
T ss_dssp EEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc
Confidence 9999999999999999999999999988764 56788889888764210 00000001111122344
Q ss_pred ceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 432 MSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 432 ~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+..++|+|++++|++++.|++|++||+.+++....+.+|.+.|++++|+|||++|++++.||+|++|+
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 66788999999999999999999999999999999999999999999999999999999999999997
No 29
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.2e-41 Score=321.05 Aligned_cols=286 Identities=27% Similarity=0.497 Sum_probs=232.3
Q ss_pred ccccccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCCCc-----eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 100 CSATIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNTQT-----PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~~~-----~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
+..+|.||++.|++|+|+|+ +++||||+.|++|+|||+.+.. +...+.+|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34578999999999999998 6899999999999999987643 45677899999999999999999999999999
Q ss_pred EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeCCCC
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~ 252 (500)
|++|+...+.... ....+...+....+.+ ....+++++.|+.+++||+..... .....+|...+.++.|++++
T Consensus 110 i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 110 LRLWDLTTGTTTR-RFVGHTKDVLSVAFSS-----DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp EEEEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred ceEEeecccceee-eecCCCCceeEEEEee-----cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 9999998765432 2334455555555544 446899999999999999976544 44467889999999997653
Q ss_pred ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
.+++++.|+.|++||+++++.+..
T Consensus 184 ~~~~~~s~~~d~~i~i~d~~~~~~~~~----------------------------------------------------- 210 (340)
T 4aow_A 184 SNPIIVSCGWDKLVKVWNLANCKLKTN----------------------------------------------------- 210 (340)
T ss_dssp SSCEEEEEETTSCEEEEETTTTEEEEE-----------------------------------------------------
T ss_pred CCcEEEEEcCCCEEEEEECCCCceeeE-----------------------------------------------------
Confidence 578899999999999877654322
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
+.+|...|++++|+|++++|++|+.||.|++||+.+++.+..+.++. .+..+
T Consensus 211 --------------------------~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~-~v~~~- 262 (340)
T 4aow_A 211 --------------------------HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD-IINAL- 262 (340)
T ss_dssp --------------------------ECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSS-CEEEE-
T ss_pred --------------------------ecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCc-eEEee-
Confidence 23567789999999999999999999999999999999888777653 45444
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc---------ccCcccCEEEEEEc
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD---------LPGHADEVFAVDWS 480 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~---------~~~h~~~V~~l~~s 480 (500)
.|+|++.++ +++.|+.|++||++++..... ..+|...|++++|+
T Consensus 263 --------------------------~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 315 (340)
T 4aow_A 263 --------------------------CFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS 315 (340)
T ss_dssp --------------------------EECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC
T ss_pred --------------------------ecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC
Confidence 568877655 566799999999988665433 34688899999999
Q ss_pred CCCCEEEEEeCCCcEEEec
Q 010816 481 PDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 481 ~dg~~l~s~~~D~~v~iW~ 499 (500)
|||++|++|+.||+|+||+
T Consensus 316 ~dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 316 ADGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp TTSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEeCCCEEEEEe
Confidence 9999999999999999997
No 30
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.9e-43 Score=342.62 Aligned_cols=341 Identities=18% Similarity=0.202 Sum_probs=273.2
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
..+++++|+|++++|++|+.|+.|++||+.++.....+..| ..+....|++++++|++|+.|+.|++||+.+++.. ..
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~ 134 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-EI 134 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-EE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-ee
Confidence 34557899999999999999999999999887665555555 44556678999999999999999999999877654 34
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEe
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWE 267 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd 267 (500)
+.+|...|.++.|+| ++..+++|+.|+.|++||+++++++..+.+|...|.+++|++++ .|++++.|+.|++||
T Consensus 135 ~~~h~~~v~~~~~~~-----~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 209 (420)
T 3vl1_A 135 DQAHVSEITKLKFFP-----SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209 (420)
T ss_dssp TTSSSSCEEEEEECT-----TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccCccEEEEECC-----CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeE
Confidence 678999999999987 44689999999999999999999999999999999999999886 688999999999999
Q ss_pred CCCCeeEEEeec---CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 268 TTQGKLIRELKG---HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 268 ~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+++++.+..+.. +...+.++++.+............ . .. .......+..+++|+.|+.|++|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~-v~-------------~~~~s~~~~~l~~~~~dg~i~i~ 274 (420)
T 3vl1_A 210 CGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTS-K-KN-------------NLEFGTYGKYVIAGHVSGVITVH 274 (420)
T ss_dssp TTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCC-C-CC-------------TTCSSCTTEEEEEEETTSCEEEE
T ss_pred CCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccC-c-cc-------------ceEEcCCCCEEEEEcCCCeEEEE
Confidence 999999888864 556788877765321100000000 0 00 00011235689999999999999
Q ss_pred cCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCCce-EEEEeC-CcccEEEEEeeeeeeecCCCC
Q 010816 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTGKF-VAVFRG-HVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~~~-~~~~~~-h~~~v~~~~~~~~~~~~~~~~ 421 (500)
|+...........+|...|.+++|+|++. +|++|+.||.|++||+.+++. +..+.+ |...+..+
T Consensus 275 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~------------- 341 (420)
T 3vl1_A 275 NVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV------------- 341 (420)
T ss_dssp ETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-------------
T ss_pred ECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-------------
Confidence 98776555555567889999999999998 999999999999999998754 667776 56666655
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCC---EEEEE
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGE---KVASG 489 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~---~l~s~ 489 (500)
+.+++++|++++.|+.|++|++...+ ....+.+|.+.|.+++|+|+++ .|+++
T Consensus 342 ---------------~~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 342 ---------------YFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp ---------------EEETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred ---------------EeCCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 24578899999999999999987632 1223557888999999999999 89999
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
|.++.+.+|+
T Consensus 407 g~~g~~~~~~ 416 (420)
T 3vl1_A 407 GKNNFCALYN 416 (420)
T ss_dssp ETTTEEEEEE
T ss_pred cCCceEEEEe
Confidence 9999999996
No 31
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.5e-40 Score=341.23 Aligned_cols=355 Identities=18% Similarity=0.285 Sum_probs=294.7
Q ss_pred cccccccCCccc-EEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC--------ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816 99 RCSATIAGHTEA-VLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ--------TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (500)
Q Consensus 99 ~~~~~~~gh~~~-V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~~~~l~s 167 (500)
.....+.+|.+. |.+++|+| ++++||+|+.||+|+|||+.++ ..+..+.+|..+|.+++|+|++++|++
T Consensus 54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 133 (615)
T 1pgu_A 54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133 (615)
T ss_dssp CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence 345678899999 99999999 9999999999999999999744 556677889999999999999999999
Q ss_pred EeCC----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc--
Q 010816 168 GSKA----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-- 241 (500)
Q Consensus 168 ~~~d----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~-- 241 (500)
++.+ +.|.+|| +++.. ..+.+|...|.++.|+|.. ...+++++.|+.|++||+.+++++..+.+|..
T Consensus 134 ~~~~~~~~~~v~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~----~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 134 VGEGRDNFGVFISWD--SGNSL-GEVSGHSQRINACHLKQSR----PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp EECCSSCSEEEEETT--TCCEE-EECCSCSSCEEEEEECSSS----SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred eccCCCCccEEEEEE--CCCcc-eeeecCCccEEEEEECCCC----CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 9988 7899998 34333 3567899999999998732 12799999999999999999999999999999
Q ss_pred -cEEEEEeCCC-C-eEEEEeCCCeEEEEeCCCCeeEEEe-e---cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 242 -AVTCVKWGGD-G-VIYTGSQDCTIKVWETTQGKLIREL-K---GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 242 -~v~~~~~~~~-~-~l~t~~~dg~i~lwd~~~~~~~~~~-~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
.|.+++|+++ + .+++++.|+.|++||+.+++.+..+ . .|...|.+++++ +
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~---------------------- 263 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D---------------------- 263 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S----------------------
T ss_pred ceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C----------------------
Confidence 9999999998 6 6888999999999999999999888 6 888899999876 4
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc----cCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h----~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
+..+++++.|+.|++||+.... ....+..+ ...+.++.|+ ++.++++++.||.|++||+.
T Consensus 264 --------------~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 264 --------------SQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp --------------SSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred --------------CCEEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECC
Confidence 3579999999999999986543 23334444 4678888886 89999999999999999999
Q ss_pred CCceEEEEeCCcccEEEEEeeee--------------------------eeecCC-------------------------
Q 010816 391 TGKFVAVFRGHVGPVYQIRFELI--------------------------YCFRYP------------------------- 419 (500)
Q Consensus 391 ~~~~~~~~~~h~~~v~~~~~~~~--------------------------~~~~~~------------------------- 419 (500)
+++.+..+.+|..++.++.+ .- .+...+
T Consensus 328 ~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 406 (615)
T 1pgu_A 328 HDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFG 406 (615)
T ss_dssp EEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECS
T ss_pred CCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCccc
Confidence 99998889888877777665 10 000000
Q ss_pred -----------------------------------------------------------CCceeee-------------e
Q 010816 420 -----------------------------------------------------------SNFYCVV-------------D 427 (500)
Q Consensus 420 -----------------------------------------------------------~~~~~~~-------------~ 427 (500)
.....+. .
T Consensus 407 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~ 486 (615)
T 1pgu_A 407 SQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP 486 (615)
T ss_dssp SCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC
T ss_pred CCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCC
Confidence 0000000 1
Q ss_pred ccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcC----------CCCEEEEEeCCCcEE
Q 010816 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSP----------DGEKVASGGKDRVLK 496 (500)
Q Consensus 428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~----------dg~~l~s~~~D~~v~ 496 (500)
....+..++|+|++++|++++.|+.|++||+.+++.+..+.+ |...|++++|+| ++++|++++.|++|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 122356688999999999999999999999999999988888 999999999999 999999999999999
Q ss_pred EecC
Q 010816 497 LWMG 500 (500)
Q Consensus 497 iW~~ 500 (500)
+|+.
T Consensus 567 iw~~ 570 (615)
T 1pgu_A 567 IYSV 570 (615)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9973
No 32
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.3e-41 Score=355.51 Aligned_cols=351 Identities=19% Similarity=0.260 Sum_probs=290.5
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
..+.+|.+.|.+++|+|++++||+|+.||.|+|||+.++..+..+.+|..+|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCC-CC-eEEEEe
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGG-DG-VIYTGS 258 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~-~~-~l~t~~ 258 (500)
++... .+.+|...|.++.|+| ++..+++++.||.|++||+..+ .....+.+|...|.++.|++ ++ .+++++
T Consensus 87 ~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 87 GEKVV-DFEAHPDYIRSIAVHP-----TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp CCEEE-EEECCSSCEEEEEECS-----SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred CcEEE-EEecCCCCEEEEEEeC-----CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 87654 4678999999999987 4468999999999999999887 77788889999999999998 55 688999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
.||.|++||+.++.....+..+. ..+..+++++. ..+..+++++.
T Consensus 161 ~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~----------------------------------~~~~~l~~~~~ 206 (814)
T 3mkq_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL----------------------------------PDKPYMITASD 206 (814)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS----------------------------------TTCCEEEEECT
T ss_pred CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC----------------------------------CCCCEEEEEeC
Confidence 99999999998887776665544 77888877762 01457999999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee--
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC-- 415 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-- 415 (500)
|+.|++||.... .....+.+|...|.+++|+|++++|++++.||.|++||..+++.+..+..|...+.++.+.....
T Consensus 207 dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 207 DLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp TSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred CCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 999999997654 34556778999999999999999999999999999999999999999999998998887632110
Q ss_pred ------------ecC----------CCCceee-----------------------------------eeccccceeeEEc
Q 010816 416 ------------FRY----------PSNFYCV-----------------------------------VDMSCCMSLYSWS 438 (500)
Q Consensus 416 ------------~~~----------~~~~~~~-----------------------------------~~~~~~~~~~~~s 438 (500)
... +.+.... ......+..++|+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 365 (814)
T 3mkq_A 286 YIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHS 365 (814)
T ss_dssp EEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEEC
T ss_pred EEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEEC
Confidence 000 0000000 0011124568899
Q ss_pred CCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+|+++++++ |+.+.+|++..... .+.+.+.+++|+|||++|++++.|++|++|+
T Consensus 366 pdg~~la~~~-~~~~~i~~~~~~~~-----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 366 PNGRFVTVVG-DGEYVIYTALAWRN-----KAFGKCQDFVWGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp TTSSEEEEEE-TTEEEEEETTTTEE-----EEEEECSEEEECTTSSCEEEECTTCCEEEEE
T ss_pred CCCCEEEEec-CCEEEEEECccccc-----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEE
Confidence 9999999998 89999999754332 2446678899999999999999999999984
No 33
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-43 Score=350.06 Aligned_cols=316 Identities=13% Similarity=0.104 Sum_probs=233.8
Q ss_pred CcccEEEEEEcCCC---------CeEEE-------------------EeCCCcEEEEeCCCCcee----EEecCCCCCEE
Q 010816 107 HTEAVLSVAFSPDG---------RQLAS-------------------GSGDTTVRLWDLNTQTPM----FKCTGHKNWVL 154 (500)
Q Consensus 107 h~~~V~~~~~sp~~---------~~lat-------------------~~~d~~i~iwd~~~~~~~----~~~~~h~~~v~ 154 (500)
+.+.|.+++|+|++ ++||+ ++.|++|+|||+.+++.. ..+.+|.+.|.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 45677777777765 45555 567899999999876542 34567889999
Q ss_pred EEEEcCC------CCEEEEEeCCCeEEEEeCCCCCcc----------cccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816 155 CIAWSAD------GKHLVSGSKAGELQCWDPQTGKPS----------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (500)
Q Consensus 155 ~v~~s~~------~~~l~s~~~d~~i~~wd~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~ 218 (500)
+++|+|+ +.+||+++.||+|++||+.++... ...+.+|...|.+++|++. ..+++|+.
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~------~~lasgs~ 285 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP------TTVVCGFK 285 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS------SEEEEEET
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC------CeEEEEeC
Confidence 9999996 579999999999999999876432 1145688999999999752 37999999
Q ss_pred CCcEEEEECCCCe-EEEEecCccccEEEE--EeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCc--eEEEEEecC
Q 010816 219 DGDARIWDVSLRK-CVICLSGHTLAVTCV--KWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGH--WVNSLALST 291 (500)
Q Consensus 219 dg~v~iwd~~~~~-~~~~~~~h~~~v~~~--~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~--~v~~~~~~~ 291 (500)
||+|++||++++. ....+.+|...|.++ .|++++ .|++|+.|++|+|||+++++....+.+|.. .|.+++++|
T Consensus 286 DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp 365 (524)
T 2j04_B 286 NGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP 365 (524)
T ss_dssp TSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET
T ss_pred CCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC
Confidence 9999999998764 445688999999999 577765 689999999999999998877666655542 467788876
Q ss_pred cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC
Q 010816 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD 371 (500)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~ 371 (500)
+ ...+++++.|++|++||++.... ...+.+|...|++|+|+|+
T Consensus 366 ~------------------------------------~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 366 Q------------------------------------IYSYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp T------------------------------------TTEEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSS
T ss_pred C------------------------------------cCeEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCC
Confidence 4 24689999999999999876443 3457789999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc--------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVG--------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~--------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
|++||+|+.||+|++||+..+ .+ .+|.. .+++ ++|+|+++.
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~---------------------------v~~sp~g~~ 457 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWK---------------------------WDYSIKDDK 457 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEE---------------------------CBCCSSSCE
T ss_pred CCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEE---------------------------eccCCCCCe
Confidence 999999999999999998654 21 22211 1222 256899885
Q ss_pred EEEEECCCcEEEEECC-CccccccccCcccCEEEEEEcCCCC---EEEEEeCCCcEEEec
Q 010816 444 LLSGSKDSTLKVWDIR-TQKLKQDLPGHADEVFAVDWSPDGE---KVASGGKDRVLKLWM 499 (500)
Q Consensus 444 l~s~s~d~~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~dg~---~l~s~~~D~~v~iW~ 499 (500)
+. . .| .+++|+.. ++.....+.+|...|++|+|+|+++ +||+|+.||+||||+
T Consensus 458 ~~-~-~~-~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 458 YR-I-DS-SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp EE-E-CC-CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred EE-c-cC-CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 52 2 22 23444433 4566778899999999999999964 999999999999996
No 34
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-40 Score=346.85 Aligned_cols=285 Identities=29% Similarity=0.503 Sum_probs=235.7
Q ss_pred ccccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCC-----ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 102 ATIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQ-----TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~-----~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
..+.+|++.|++++|+|++ ++|+||+.|++|+|||+.+. .....+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~ 455 (694)
T 3dm0_A 376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR 455 (694)
T ss_dssp EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence 3578999999999999875 78999999999999998753 23456789999999999999999999999999999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe---cCccccEEEEEeCCCC
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVKWGGDG 252 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~h~~~v~~~~~~~~~ 252 (500)
+||+.+++... .+.+|...|.++.|+| ++..+++|+.|++|++||.......... .+|...|.++.|++++
T Consensus 456 vwd~~~~~~~~-~~~~h~~~v~~~~~s~-----~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 456 LWDLAAGVSTR-RFVGHTKDVLSVAFSL-----DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEETTTTEEEE-EEECCSSCEEEEEECT-----TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEECCCCccee-EEeCCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 99999886543 4678999999999987 4568999999999999998655433322 4788999999999875
Q ss_pred ---eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 253 ---VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 253 ---~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
.+++|+.|++|++||+++++...
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~------------------------------------------------------ 555 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRS------------------------------------------------------ 555 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEE------------------------------------------------------
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEE------------------------------------------------------
Confidence 58899999999999987644322
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
.+.+|...|++++|+|+|++|++|+.||.|++||+.+++.+..+..+ ..+.++
T Consensus 556 -------------------------~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~- 608 (694)
T 3dm0_A 556 -------------------------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN-SVIHAL- 608 (694)
T ss_dssp -------------------------EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS-SCEEEE-
T ss_pred -------------------------EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC-CcEEEE-
Confidence 23467788999999999999999999999999999999887666543 345444
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc------------------
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------------------ 471 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------------------ 471 (500)
+|+|++.+|++++ |+.|+|||+++++.+..+..+.
T Consensus 609 --------------------------~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 661 (694)
T 3dm0_A 609 --------------------------CFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRK 661 (694)
T ss_dssp --------------------------EECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------C
T ss_pred --------------------------EEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCce
Confidence 6799998888766 5569999999887765543221
Q ss_pred -cCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 472 -DEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 472 -~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
-.+.+++|+|||++|++|+.||+|++|+.
T Consensus 662 ~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 662 VIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp CCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred eEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 13789999999999999999999999973
No 35
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-40 Score=315.71 Aligned_cols=284 Identities=19% Similarity=0.306 Sum_probs=240.3
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
.+.||.+.|++++|+|++++||+|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~ 106 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG 106 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCe-----------EEEEecCccc--cEE
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRK-----------CVICLSGHTL--AVT 244 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~-----------~~~~~~~h~~--~v~ 244 (500)
+..... . +...+.++.|.| ++..+++++.+ +.|++||+.... .+..+..|.. .+.
T Consensus 107 ~~~~~~-~-~~~~v~~~~~~~-----~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (369)
T 3zwl_B 107 QCVATW-K-SPVPVKRVEFSP-----CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT 179 (369)
T ss_dssp CEEEEE-E-CSSCEEEEEECT-----TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred cEEEEe-e-cCCCeEEEEEcc-----CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence 765432 2 778899999987 45689999988 999999986543 2223334444 677
Q ss_pred EEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816 245 CVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (500)
Q Consensus 245 ~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (500)
+++|++++ .+++++.||.|++||++++
T Consensus 180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~---------------------------------------------------- 207 (369)
T 3zwl_B 180 VAGWSTKGKYIIAGHKDGKISKYDVSNN---------------------------------------------------- 207 (369)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTT----------------------------------------------------
T ss_pred EEEEcCCCCEEEEEcCCCEEEEEECCCC----------------------------------------------------
Confidence 77777665 4666777777777776542
Q ss_pred hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (500)
Q Consensus 324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~ 403 (500)
......+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. +..
T Consensus 208 --------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~ 260 (369)
T 3zwl_B 208 --------------------------YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC 260 (369)
T ss_dssp --------------------------TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred --------------------------cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence 11122334567789999999999999999999999999999999888776 555
Q ss_pred cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC--------------cEEEEECCCccccccccC
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS--------------TLKVWDIRTQKLKQDLPG 469 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--------------~v~iwd~~~~~~~~~~~~ 469 (500)
++..+ +|+|+++++++++.++ .+++||+.+++....+.+
T Consensus 261 ~~~~~---------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~ 313 (369)
T 3zwl_B 261 PLNTA---------------------------VITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG 313 (369)
T ss_dssp CEEEE---------------------------EECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC
T ss_pred CceeE---------------------------EecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec
Confidence 55555 6799999999999988 899999999999999999
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|...|.+++|+|++++|++++.||+|++|+
T Consensus 314 ~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 314 HFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 999999999999999999999999999997
No 36
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.2e-41 Score=326.36 Aligned_cols=293 Identities=20% Similarity=0.261 Sum_probs=249.7
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc------eeEEecCCCCCEEEEEEcCC----C---CEEEE
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT------PMFKCTGHKNWVLCIAWSAD----G---KHLVS 167 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~------~~~~~~~h~~~v~~v~~s~~----~---~~l~s 167 (500)
...+.+|.+.|++++|+| ++|++|+.||+|+|||+.++. .+..+.+|...|.+++|+|+ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 346789999999999999 899999999999999999887 67788899999999999999 9 99999
Q ss_pred EeCCCeEEEEeCCCCCcc----cccccCc-----ccceEEEEeeeeecCCCCce-EEEEeCCCcEEEEECCC------Ce
Q 010816 168 GSKAGELQCWDPQTGKPS----GNPLSGH-----KKWITGISWEPVHLNAPCRR-FVSASKDGDARIWDVSL------RK 231 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~----~~~~~~~-----~~~v~~~~~~~~~~~~~~~~-~~s~s~dg~v~iwd~~~------~~ 231 (500)
++.|+.|++||+.+++.. ...+..| ...|.++.|.+... .++.. +++++.||.|++||++. ++
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND-RLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccC-CCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999887641 2345667 58999999982100 13457 99999999999999988 65
Q ss_pred EEE-----Ee-------cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecc
Q 010816 232 CVI-----CL-------SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGA 299 (500)
Q Consensus 232 ~~~-----~~-------~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 299 (500)
++. .+ ..|...|.+++|++++.+++++.|+.|++||+++++.+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-------------------- 225 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFES-------------------- 225 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEEC--------------------
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEec--------------------
Confidence 554 55 4588899999999988888899999999999987655443221
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---cCcEEEEEECCCCCEEE
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---QQLVNHVYFSPDGQWVA 376 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---~~~v~~l~~sp~g~~la 376 (500)
..+| ...|.+++|+|++++|+
T Consensus 226 --------------------------------------------------------~~~h~~~~~~i~~i~~~~~~~~l~ 249 (397)
T 1sq9_A 226 --------------------------------------------------------QHSMINNSNSIRSVKFSPQGSLLA 249 (397)
T ss_dssp --------------------------------------------------------CC---CCCCCEEEEEECSSTTEEE
T ss_pred --------------------------------------------------------cccccccCCccceEEECCCCCEEE
Confidence 0124 56799999999999999
Q ss_pred EEeCC---CcEEEEeCCCCceEEEEeC-------------CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 377 SASFD---KSIKLWNGTTGKFVAVFRG-------------HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 377 sgs~D---g~i~lwd~~~~~~~~~~~~-------------h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
+++.| +.|++||+.+++.+..+.+ |...+.++ +|+|+
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---------------------------~~~~~ 302 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSL---------------------------SFNDS 302 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEE---------------------------EECSS
T ss_pred EEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEE---------------------------EECCC
Confidence 99999 9999999999999999988 88887776 57999
Q ss_pred CCEEEEEECCCcEEEEECCCcccccccc------Cc---------------ccCEEEEEEcCCC----------CEEEEE
Q 010816 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLP------GH---------------ADEVFAVDWSPDG----------EKVASG 489 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~h---------------~~~V~~l~~s~dg----------~~l~s~ 489 (500)
+++|++++.|+.|++||+++++.+..+. +| ...|++++|+|+| ++|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 9999999999999999999999888888 78 8999999999998 799999
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
+.|+.|++|+
T Consensus 383 ~~dg~i~iw~ 392 (397)
T 1sq9_A 383 CLDRSIRWFR 392 (397)
T ss_dssp ETTTEEEEEE
T ss_pred cCCCcEEEEE
Confidence 9999999997
No 37
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.5e-40 Score=324.05 Aligned_cols=320 Identities=25% Similarity=0.425 Sum_probs=268.3
Q ss_pred ccccCCcccE-EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 102 ATIAGHTEAV-LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 102 ~~~~gh~~~V-~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
.++.||.+.| .++++ ++++|++|+.||+|++||+.+++.+..+.+|.+.|.+++|+|++ +|++|+.||+|++||+.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 4678999885 55555 67899999999999999999999999999999999999999988 99999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe-----------------------EEEEec
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK-----------------------CVICLS 237 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~-----------------------~~~~~~ 237 (500)
+++... .+.+|...|.++.|.+. .+...+++|+.|+.|++||++.+. .+..+.
T Consensus 192 ~~~~~~-~~~~h~~~v~~l~~~~~---~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 192 KGCCTH-VFEGHNSTVRCLDIVEY---KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp TTEEEE-EECCCSSCEEEEEEEES---SSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred CCcEEE-EECCCCCccEEEEEecC---CCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 887543 56789999999999863 244689999999999999998764 255678
Q ss_pred CccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816 238 GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (500)
+|...|.++... ...+++|+.|+.|++||+++++.+..+.+|...|.+++++++
T Consensus 268 ~~~~~v~~~~~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~------------------------- 321 (464)
T 3v7d_B 268 GHMASVRTVSGH-GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHE------------------------- 321 (464)
T ss_dssp CCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-------------------------
T ss_pred CccceEEEEcCC-CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCC-------------------------
Confidence 899999998655 347999999999999999999999999999999999998875
Q ss_pred HHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816 318 LERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~ 397 (500)
+..+++|+.|++|++||+... .....+.+|...|.+++|+ +.+|++|+.||.|++||+.+++....
T Consensus 322 -----------~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~ 387 (464)
T 3v7d_B 322 -----------RKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS 387 (464)
T ss_dssp -----------TTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -----------CCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee
Confidence 357999999999999998654 3456678999999999997 58999999999999999998776544
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCcccCEEE
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGHADEVFA 476 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h~~~V~~ 476 (500)
+. |...+ ...+|+|+++++++|+ |+.|++||+++++.+.. +.+|.+.|++
T Consensus 388 ~~-~~~~~---------------------------~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~ 438 (464)
T 3v7d_B 388 YH-HTNLS---------------------------AITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWS 438 (464)
T ss_dssp EE-CTTCC---------------------------CEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEE
T ss_pred ec-CCCCc---------------------------cEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEE
Confidence 32 22221 2236789999999999 99999999999998875 6778999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEe
Q 010816 477 VDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 477 l~~s~dg~~l~s~~~D~~v~iW 498 (500)
++|+ ++..+++++.|+.+.+|
T Consensus 439 v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 439 VNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEEE-TTEEEEEEEETTEEEEE
T ss_pred EEec-CCEEEEEEEeCCeEEEE
Confidence 9997 33455566778877665
No 38
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2e-40 Score=322.52 Aligned_cols=290 Identities=26% Similarity=0.515 Sum_probs=237.7
Q ss_pred eeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe
Q 010816 79 EKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC 146 (500)
Q Consensus 79 ~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~ 146 (500)
..+..+.|.|.. ..+++.. ..+..++.+|.+.|.+++|+|++++||+|+.|++|+|||+.+..++..+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~ 188 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECC
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEE
Confidence 456667776642 3345543 3456788999999999999999999999999999999999999988889
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd 226 (500)
.+|...|.+++|+|++++|++|+.|++|++||+.++.... .+.+|...|..+.|.| ++..+++|+.|++|++||
T Consensus 189 ~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~-~~~~h~~~v~~~~~~~-----~g~~l~s~s~D~~v~vwd 262 (410)
T 1vyh_C 189 HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK-TFTGHREWVRMVRPNQ-----DGTLIASCSNDQTVRVWV 262 (410)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEE
T ss_pred cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-EEeCCCccEEEEEECC-----CCCEEEEEcCCCeEEEEE
Confidence 9999999999999999999999999999999999987654 4678999999998865 456899999999999999
Q ss_pred CCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCC
Q 010816 227 VSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQ 306 (500)
Q Consensus 227 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 306 (500)
+.++++...+.+|...|.++.|++++....... ..+....
T Consensus 263 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~---------~~~~~~~------------------------------- 302 (410)
T 1vyh_C 263 VATKECKAELREHRHVVECISWAPESSYSSISE---------ATGSETK------------------------------- 302 (410)
T ss_dssp TTTCCEEEEECCCSSCEEEEEECCSCGGGGGGG---------CCSCC---------------------------------
T ss_pred CCCCceeeEecCCCceEEEEEEcCcccccchhh---------hcccccc-------------------------------
Confidence 999999999999999999999998642110000 0000000
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEE
Q 010816 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKL 386 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~l 386 (500)
.....+..+++|+.|++|++||+.... ....+.+|...|++++|+|+|++|++|+.||.|++
T Consensus 303 -----------------~~~~~g~~l~sgs~D~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 303 -----------------KSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364 (410)
T ss_dssp ----------------------CCEEEEEETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred -----------------ccCCCCCEEEEEeCCCeEEEEECCCCc-eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 000113467888888888888875432 34566789999999999999999999999999999
Q ss_pred EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
||+.+++++..+.+|...|.++ +|+|++.+|++|+.|++|++|+++
T Consensus 365 wd~~~~~~~~~~~~h~~~v~~l---------------------------~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 365 WDYKNKRCMKTLNAHEHFVTSL---------------------------DFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ECCTTSCCCEEEECCSSCEEEE---------------------------EECSSSSCEEEEETTSEEEEEC--
T ss_pred EECCCCceEEEEcCCCCcEEEE---------------------------EEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999999999999887 569999999999999999999863
No 39
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.8e-41 Score=328.47 Aligned_cols=333 Identities=14% Similarity=0.174 Sum_probs=248.0
Q ss_pred ccccccc-cCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCC---Cc---eeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816 98 NRCSATI-AGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNT---QT---PMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (500)
Q Consensus 98 ~~~~~~~-~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~---~~---~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 169 (500)
+.+...+ .+|.+.|++++|+| ++++||+|+.|++|+|||+.+ +. +...+ +|...|.+++|+|++++|++|+
T Consensus 52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s 130 (437)
T 3gre_A 52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSS 130 (437)
T ss_dssp CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEE
T ss_pred ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEe
Confidence 3445566 89999999999999 999999999999999999865 32 23333 5999999999999999999999
Q ss_pred CCCeEEEEeCC---CCCcccccccCcccceEEEEeeee-----------ecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816 170 KAGELQCWDPQ---TGKPSGNPLSGHKKWITGISWEPV-----------HLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 170 ~d~~i~~wd~~---~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 235 (500)
.|++|++||+. +++... ...+| .+..+.|.|. ....++..+++|+.|+.|++||+++++++..
T Consensus 131 ~dg~i~vwd~~~~~~~~~~~-~~~~~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 131 KDGQIIVLKVNHYQQESEVK-FLNCE--CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp TTSEEEEEEEEEEEETTEEE-EEEEE--EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CCCEEEEEEeccccCCceee-ccccc--eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 99999999984 443321 11112 3333333320 1233567899999999999999999999999
Q ss_pred ecC--ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816 236 LSG--HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (500)
Q Consensus 236 ~~~--h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (500)
+.+ |...|++++|++++ .|++|+.||.|++||+++++.+..+. .|...|.++++++.+.
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s----------------- 270 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYG----------------- 270 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTC-----------------
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccC-----------------
Confidence 988 89999999999887 58899999999999999999998886 7778899998776421
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce-----------------------eeec--ccCcEEEE
Q 010816 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT-----------------------RMTG--HQQLVNHV 366 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~-----------------------~~~~--h~~~v~~l 366 (500)
..+..+++|+.|++|++||+........ .+.+ |...|.++
T Consensus 271 ---------------~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 271 ---------------KNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp ---------------TTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred ---------------CCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 1234789999999999999864431110 1122 77779999
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
+|+ ++++|++|+.|+.|++||+.+++.+..+.+|......+.. ..++++..+++.
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 390 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIP------------------------TQVTANLTMLLR 390 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEE------------------------EEEETTEEEEEE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEE------------------------EEeecceEEEEE
Confidence 999 7899999999999999999999999988887644222211 123445444444
Q ss_pred EECCCcEEEEECCCccccccccCcccCEEEEEEcCC--CCEEEEEeCCCcEEEec
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPD--GEKVASGGKDRVLKLWM 499 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d--g~~l~s~~~D~~v~iW~ 499 (500)
. |+............|.+.|++++|+++ +..|++|+.||+|+||.
T Consensus 391 ~--------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 391 K--------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp E--------CC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred e--------cccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 3 333333334455679999999999998 78999999999999995
No 40
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-39 Score=304.97 Aligned_cols=283 Identities=27% Similarity=0.417 Sum_probs=243.3
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
+..++.+|.+.|.+++| |++++||+|+.||.|++||+.++.....+..|...|.+++|+|++++|++++.|+.|++|++
T Consensus 10 ~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~ 88 (313)
T 3odt_A 10 LSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPL 88 (313)
T ss_dssp EEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred HHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEe
Confidence 34567899999999999 99999999999999999999998888888899999999999999999999999999999998
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
...... +.+..+.+|...|.++.|. ++.+++++.
T Consensus 89 ~~~~~~---------------------------------------------~~~~~~~~~~~~i~~~~~~-~~~l~~~~~ 122 (313)
T 3odt_A 89 FATSGE---------------------------------------------DPLYTLIGHQGNVCSLSFQ-DGVVISGSW 122 (313)
T ss_dssp TCCTTS---------------------------------------------CC-CEECCCSSCEEEEEEE-TTEEEEEET
T ss_pred eecCCC---------------------------------------------CcccchhhcccCEEEEEec-CCEEEEEeC
Confidence 653211 1112235677788888884 457888999
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
|+.|++|| .++....+..|...+.++.+.+. .+..+++++.|+
T Consensus 123 d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-----------------------------------~~~~l~~~~~d~ 165 (313)
T 3odt_A 123 DKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-----------------------------------SENKFLTASADK 165 (313)
T ss_dssp TSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-----------------------------------TTTEEEEEETTS
T ss_pred CCCEEEEc--CCcEEEecccCCCceeEEEEccC-----------------------------------CCCEEEEEECCC
Confidence 99999998 66777788888888888877652 145799999999
Q ss_pred eEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 340 TMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
.+++||.. .....+.. |...+.+++|+|++. +++++.||.|++||+.+++.+..+.+|.+++.++
T Consensus 166 ~i~i~d~~---~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~---------- 231 (313)
T 3odt_A 166 TIKLWQND---KVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCI---------- 231 (313)
T ss_dssp CEEEEETT---EEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE----------
T ss_pred CEEEEecC---ceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEE----------
Confidence 99999932 23344455 889999999999998 9999999999999999999999999999999887
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+|+|++ .|++++.||.|++||+++++....+..|...|.+++|+|+++ +++++.|+.|++|
T Consensus 232 -----------------~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw 292 (313)
T 3odt_A 232 -----------------KLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIF 292 (313)
T ss_dssp -----------------EECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEE
T ss_pred -----------------EEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEE
Confidence 568999 589999999999999999999999999999999999999998 6789999999999
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
+
T Consensus 293 ~ 293 (313)
T 3odt_A 293 S 293 (313)
T ss_dssp E
T ss_pred e
Confidence 7
No 41
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.7e-40 Score=307.05 Aligned_cols=246 Identities=27% Similarity=0.457 Sum_probs=222.8
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.||...|.+++|+|++.++++++.|++|++||+.+++++..+..|...+.+++|+|++++|++|+.|+.|++||++
T Consensus 73 ~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~ 152 (321)
T 3ow8_A 73 QWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE 152 (321)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT
T ss_pred eeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC
Confidence 34578999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeC
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQ 259 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~ 259 (500)
+++... .+..|...+.+++|+| ++..+++|+.|+.|++||+++++++..+.+|..+|.+++|++++ .|++|+.
T Consensus 153 ~~~~~~-~~~~~~~~v~~~~~sp-----dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 226 (321)
T 3ow8_A 153 SGKKEY-SLDTRGKFILSIAYSP-----DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226 (321)
T ss_dssp TCSEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT
T ss_pred CCceeE-EecCCCceEEEEEECC-----CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC
Confidence 887543 4567788899999987 55789999999999999999999999999999999999999987 5888999
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
|+.|++||+++++...
T Consensus 227 dg~i~iwd~~~~~~~~---------------------------------------------------------------- 242 (321)
T 3ow8_A 227 DGYIKIYDVQHANLAG---------------------------------------------------------------- 242 (321)
T ss_dssp TSCEEEEETTTCCEEE----------------------------------------------------------------
T ss_pred CCeEEEEECCCcceeE----------------------------------------------------------------
Confidence 9999999987654322
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCC
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
.+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+.+|.+.|.++
T Consensus 243 ---------------~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v----------- 296 (321)
T 3ow8_A 243 ---------------TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGV----------- 296 (321)
T ss_dssp ---------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEE-----------
T ss_pred ---------------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEE-----------
Confidence 234677789999999999999999999999999999999999999999999888
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
+|+|++++|++++.|+.|++||.
T Consensus 297 ----------------~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 297 ----------------KYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------EECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------EECCCCCEEEEEeCCCeEEEEeC
Confidence 56999999999999999999996
No 42
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.7e-40 Score=314.70 Aligned_cols=290 Identities=18% Similarity=0.313 Sum_probs=236.1
Q ss_pred cccCCcccEEEEEEcCCCCeE-EEEeC---CCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCC---CCEEEEEeCCCeE
Q 010816 103 TIAGHTEAVLSVAFSPDGRQL-ASGSG---DTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSAD---GKHLVSGSKAGEL 174 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~l-at~~~---d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~---~~~l~s~~~d~~i 174 (500)
.+.+|.+.|.+++|+|++..+ ++|+. |+.|+|||+.++..... ..+|...|.+++|+|+ +++|++|+.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 346799999999999999655 55655 99999999998776533 3379999999999998 6999999999999
Q ss_pred EEEeCCCCCcccccccCcccceEEEEeeee-ecCCCCceEEEEeCCCcEEEEECCCCe-EEEEecCccc----cEEEEE-
Q 010816 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPV-HLNAPCRRFVSASKDGDARIWDVSLRK-CVICLSGHTL----AVTCVK- 247 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~~~h~~----~v~~~~- 247 (500)
++||+.+++.....+.+|...|.++.|.+. .++.++..+++++.|+.|++||++.+. .+..+..|.. .+.++.
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 172 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF 172 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence 999999887344567889999999988753 334566789999999999999999876 6666665544 788888
Q ss_pred ---eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816 248 ---WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (500)
Q Consensus 248 ---~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (500)
|++++ .+++++.|+.|++||+++++...
T Consensus 173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~------------------------------------------------ 204 (357)
T 3i2n_A 173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRW------------------------------------------------ 204 (357)
T ss_dssp ECCCC-CCCEEEEEETTSEEEEEETTTTEEEE------------------------------------------------
T ss_pred EeccCCCCCEEEEEccCCeEEEEECccCceee------------------------------------------------
Confidence 55554 57788888889998887654211
Q ss_pred hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC---CCCEEEEEeCCCcEEEEeCCCCceEEEEe-
Q 010816 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP---DGQWVASASFDKSIKLWNGTTGKFVAVFR- 399 (500)
Q Consensus 324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp---~g~~lasgs~Dg~i~lwd~~~~~~~~~~~- 399 (500)
...|...|.+++|+| ++.+|++|+.||.|++||+++++.+..+.
T Consensus 205 --------------------------------~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 205 --------------------------------ETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp --------------------------------EEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred --------------------------------ecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence 123556789999999 99999999999999999998876544443
Q ss_pred ----CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCc-------------
Q 010816 400 ----GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQ------------- 461 (500)
Q Consensus 400 ----~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~------------- 461 (500)
+|...+.++ +|+|++. +|++|+.||.|++||++.+
T Consensus 253 ~~~~~~~~~v~~~---------------------------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~ 305 (357)
T 3i2n_A 253 VSEKAHKSTVWQV---------------------------RHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEM 305 (357)
T ss_dssp EEEECCSSCEEEE---------------------------EEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCC
T ss_pred eccCCCcCCEEEE---------------------------EECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCcc
Confidence 888888777 5689998 8999999999999998753
Q ss_pred ------cccccccCcccCEEEEEEcCCCCEEE-EEeCCCcEEEec
Q 010816 462 ------KLKQDLPGHADEVFAVDWSPDGEKVA-SGGKDRVLKLWM 499 (500)
Q Consensus 462 ------~~~~~~~~h~~~V~~l~~s~dg~~l~-s~~~D~~v~iW~ 499 (500)
+.+..+.+|.+.|++++|+|+|++|+ +++.|+.|++|+
T Consensus 306 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 306 GVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred ccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEE
Confidence 34556788999999999999999998 899999999997
No 43
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6e-40 Score=316.72 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=239.4
Q ss_pred cccCCcccEEEEEEcCCC-CeEEEEeCCCcEEEEeCCCCceeEEec--CCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 010816 103 TIAGHTEAVLSVAFSPDG-RQLASGSGDTTVRLWDLNTQTPMFKCT--GHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~-~~lat~~~d~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd 178 (500)
.+.+|.+.|.+++|+|++ ++||+|+.|+.|+|||+.++.....+. +|...|.+++|+| ++++|++++.|+.|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 467899999999999999 999999999999999999887766554 7999999999999 789999999999999999
Q ss_pred CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEE
Q 010816 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY 255 (500)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (500)
+.+..... ....+|...|.++.|+| ++..+++|+.|+.|++||+ .++++..+.+|...|.+++|++++ .++
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 221 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSV-----SRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMA 221 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEET-----TTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEE
T ss_pred CCCCceEEEeccCCCCCCeEEEEECC-----CCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEE
Confidence 98532211 11234557899999987 4568999999999999999 577888899999999999999987 688
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+++.|+.|++||+++++..
T Consensus 222 s~~~d~~i~iwd~~~~~~~------------------------------------------------------------- 240 (383)
T 3ei3_B 222 TSSVDATVKLWDLRNIKDK------------------------------------------------------------- 240 (383)
T ss_dssp EEETTSEEEEEEGGGCCST-------------------------------------------------------------
T ss_pred EEeCCCEEEEEeCCCCCcc-------------------------------------------------------------
Confidence 9999999999998653210
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
... ....+|...|.+++|+| ++.+|++++.|+.|++||+.+++.+..+.+|......
T Consensus 241 --------------~~~-~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~------- 298 (383)
T 3ei3_B 241 --------------NSY-IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQ------- 298 (383)
T ss_dssp --------------TCE-EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCT-------
T ss_pred --------------cce-EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccc-------
Confidence 000 11125777899999999 9999999999999999999998887777665432110
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC--cccCEEEEEEcCCCCEEEEEeCC
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG--HADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~--h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
.................++|+|++++ +|+.|+.|++||+.+++.+..+.+ |...+..++|+|+|++|++|+ |
T Consensus 299 ---~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d 372 (383)
T 3ei3_B 299 ---HLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-G 372 (383)
T ss_dssp ---TSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-T
T ss_pred ---cccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-C
Confidence 00000000011112233467888887 888999999999999999888877 456777889999999999997 9
Q ss_pred CcEEEecC
Q 010816 493 RVLKLWMG 500 (500)
Q Consensus 493 ~~v~iW~~ 500 (500)
+.|++|+.
T Consensus 373 ~~i~iw~~ 380 (383)
T 3ei3_B 373 FNILIWNR 380 (383)
T ss_dssp TEEEEEEC
T ss_pred CcEEEEec
Confidence 99999973
No 44
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=8.7e-40 Score=314.05 Aligned_cols=300 Identities=16% Similarity=0.247 Sum_probs=245.3
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
..|.++|.+++|+|++++||+|+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|++||+.++
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 84 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR 84 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence 4589999999999999999999999999999999887 77888899999999999999999999999999999999877
Q ss_pred Cccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCccccEEEEEeCCCC-eEEE
Q 010816 183 KPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 183 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~~~v~~~~~~~~~-~l~t 256 (500)
+... ..+..|...+.++.|.| ++..+++++.|+.|++||++.+. ......+|...|.++.|++++ .+++
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 159 (372)
T 1k8k_C 85 TWKPTLVILRINRAARCVRWAP-----NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA 159 (372)
T ss_dssp EEEEEEECCCCSSCEEEEEECT-----TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred eeeeeEEeecCCCceeEEEECC-----CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE
Confidence 5322 23467888999999986 45689999999999999998765 233346789999999999886 6889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
++.|+.|++||++.........
T Consensus 160 ~~~dg~i~~~d~~~~~~~~~~~---------------------------------------------------------- 181 (372)
T 1k8k_C 160 GSCDFKCRIFSAYIKEVEERPA---------------------------------------------------------- 181 (372)
T ss_dssp EETTSCEEEEECCCTTTSCCCC----------------------------------------------------------
T ss_pred EcCCCCEEEEEccccccccccc----------------------------------------------------------
Confidence 9999999999986432100000
Q ss_pred CCCeEEEEcC-CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 337 DDFTMFLWEP-AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 337 ~d~~v~~wd~-~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
...|.. .........+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|..++.++
T Consensus 182 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~------- 250 (372)
T 1k8k_C 182 ----PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAV------- 250 (372)
T ss_dssp ----CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEE-------
T ss_pred ----ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEE-------
Confidence 000000 00112233445788899999999999999999999999999999999999999999888877
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC--ccc------------------------------
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT--QKL------------------------------ 463 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~--~~~------------------------------ 463 (500)
+|+|++++|++| .|+.|++|++.. ++.
T Consensus 251 --------------------~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 251 --------------------TFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp --------------------EEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred --------------------EEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 568999988887 999999999977 321
Q ss_pred --c------ccc-cCcccCEEEEEEc-CCC---CEEEEEeCCCcEEEec
Q 010816 464 --K------QDL-PGHADEVFAVDWS-PDG---EKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 --~------~~~-~~h~~~V~~l~~s-~dg---~~l~s~~~D~~v~iW~ 499 (500)
. ..+ .+|.+.|++++|+ ++| ++|+||+.||+|++|+
T Consensus 310 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp ---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 0 223 4899999999976 676 9999999999999997
No 45
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-39 Score=299.98 Aligned_cols=258 Identities=22% Similarity=0.380 Sum_probs=197.9
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEe
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCWD 178 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~wd 178 (500)
.+.||.+.|.+++|+|+|++||+|+.|++|+|||+.+. +++..+.+|.++|.+++|+++ +++|++|+.|++|++||
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd 83 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWK 83 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEE
Confidence 46799999999999999999999999999999999753 567788999999999999864 88999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC---CeEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD---GVIY 255 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~ 255 (500)
+++++.. .+..+.+|...|.+++|+++ ..|+
T Consensus 84 ~~~~~~~----------------------------------------------~~~~~~~h~~~v~~v~~~p~~~g~~l~ 117 (297)
T 2pm7_B 84 EENGRWS----------------------------------------------QIAVHAVHSASVNSVQWAPHEYGPMLL 117 (297)
T ss_dssp BSSSCBC----------------------------------------------CCEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred cCCCceE----------------------------------------------EEEEeecCCCceeEEEeCcCCCCcEEE
Confidence 8765311 01123467788899999885 3688
Q ss_pred EEeCCCeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 256 TGSQDCTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.|++|++||++++.. ...+..|...|.+++++|.....
T Consensus 118 s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~------------------------------------- 160 (297)
T 2pm7_B 118 VASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE------------------------------------- 160 (297)
T ss_dssp EEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------------------------------------
T ss_pred EEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc-------------------------------------
Confidence 999999999999876421 12233444444444443321000
Q ss_pred EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc----eEEEEeCCcccEEEEE
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIR 409 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~h~~~v~~~~ 409 (500)
++ .+ ...+++++||+|+.|++|++||+++++ +...+.+|...|.++
T Consensus 161 ----~~------------------~~-------~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v- 210 (297)
T 2pm7_B 161 ----DG------------------EH-------NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV- 210 (297)
T ss_dssp --------------------------------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE-
T ss_pred ----cc------------------cC-------CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEE-
Confidence 00 00 001236799999999999999998876 667889999999888
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCC---CEEEEEECCCcEEEEECCCccc---cccc--cCcccCEEEEEEcC
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLLLSGSKDSTLKVWDIRTQKL---KQDL--PGHADEVFAVDWSP 481 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~s~d~~v~iwd~~~~~~---~~~~--~~h~~~V~~l~~s~ 481 (500)
+|+|++ .+||+|+.|++|+|||++.... ...+ .+|.+.|++++|+|
T Consensus 211 --------------------------~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 264 (297)
T 2pm7_B 211 --------------------------AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSL 264 (297)
T ss_dssp --------------------------EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECS
T ss_pred --------------------------EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECC
Confidence 568884 8999999999999999876431 1222 56888999999999
Q ss_pred CCCEEEEEeCCCcEEEec
Q 010816 482 DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 482 dg~~l~s~~~D~~v~iW~ 499 (500)
+|++||+++.|++|+||+
T Consensus 265 ~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 265 SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp SSCCEEEEETTSCEEEEE
T ss_pred CCCEEEEEcCCCcEEEEE
Confidence 999999999999999996
No 46
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=307.32 Aligned_cols=245 Identities=21% Similarity=0.301 Sum_probs=203.4
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE----ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK----CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~----~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
.|...|.+++|+|++ .|++|+.||+|+|||+.+++.+.. +.+|.+.|.+++|+|+|++|++|+.|++|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999985 688999999999999998876543 458999999999999999999999999999999999
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCC--eEEEE
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDG--VIYTG 257 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~--~l~t~ 257 (500)
++... .+.+|...|.++.|+|.. ...|++|+.|++|++||++++++...+. .|...+.+++|++++ ++++|
T Consensus 159 ~~~~~-~~~~h~~~V~~~~~~~~~----~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg 233 (344)
T 4gqb_B 159 QVVLS-SYRAHAAQVTCVAASPHK----DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG 233 (344)
T ss_dssp TEEEE-EECCCSSCEEEEEECSSC----TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred CcEEE-EEcCcCCceEEEEecCCC----CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence 87654 578999999999998743 2478999999999999999998887764 455678899998743 57788
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|++|++||+++++.+.
T Consensus 234 ~~dg~v~~wd~~~~~~~~-------------------------------------------------------------- 251 (344)
T 4gqb_B 234 DENGTVSLVDTKSTSCVL-------------------------------------------------------------- 251 (344)
T ss_dssp ETTSEEEEEESCC--CCE--------------------------------------------------------------
T ss_pred ccCCcEEEEECCCCcEEE--------------------------------------------------------------
Confidence 999999999987654332
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
.+.+|...|++++|+|++ ++||+|+.|++|+|||..+++++ .+.+|.+.|+++
T Consensus 252 -----------------~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v-------- 305 (344)
T 4gqb_B 252 -----------------SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDA-------- 305 (344)
T ss_dssp -----------------EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEE--------
T ss_pred -----------------EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEE--------
Confidence 234677789999999998 68999999999999999998865 478999999888
Q ss_pred cCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCCccc
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~~~~ 463 (500)
+|+|+++ +|++|+.|++|++|++.+...
T Consensus 306 -------------------~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 306 -------------------TWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp -------------------EECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred -------------------EEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 5699886 678999999999999977544
No 47
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.3e-40 Score=321.87 Aligned_cols=293 Identities=19% Similarity=0.269 Sum_probs=226.5
Q ss_pred cccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCce--eEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEe
Q 010816 103 TIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTP--MFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd 178 (500)
...+|...|+||+|+| ++++||+|+.||+|+|||+.++.. ...+.+|.+.|.+|+|+| ++++|++|+.||+|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 4567899999999999 567999999999999999987654 344568999999999998 689999999999999999
Q ss_pred CCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC--eEE
Q 010816 179 PQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG--VIY 255 (500)
Q Consensus 179 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (500)
++++.... .....+...+.++.|+| ++..+++|+.||.|++||++. +.+..+.+|...|.+++|++++ .++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSA-----SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEET-----TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred ccCCceeEEeccCCCCccEEEEEECC-----CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEE
Confidence 97654221 11223344567777766 456899999999999999864 5667788999999999999865 578
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+|+.|+.|++||+++++...
T Consensus 268 s~s~d~~v~iwd~~~~~~~~------------------------------------------------------------ 287 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKA------------------------------------------------------------ 287 (435)
T ss_dssp EEETTSBCCEEETTTCCSSS------------------------------------------------------------
T ss_pred EecCcceeeEEecccccccc------------------------------------------------------------
Confidence 89999999999987643110
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
......+|...|++++|+|+|.+|++|+.||.|++||+.++++...+..|......-
T Consensus 288 ----------------~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~------- 344 (435)
T 4e54_B 288 ----------------SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQH------- 344 (435)
T ss_dssp ----------------CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSS-------
T ss_pred ----------------eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccccccc-------
Confidence 011224688899999999999999999999999999999998887777765421100
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEE------------CCCcEEEEECCCccccccc-cCcccCEEEE-EEcC
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS------------KDSTLKVWDIRTQKLKQDL-PGHADEVFAV-DWSP 481 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s------------~d~~v~iwd~~~~~~~~~~-~~h~~~V~~l-~~s~ 481 (500)
.. .....|+|++.++++++ .++.|++||..+++.+..+ .+|...|.++ +|+|
T Consensus 345 ---~~-----------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 345 ---LT-----------PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp ---SC-----------CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred ---ce-----------eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 00 00113445555444443 3467999999999887765 4688888887 6999
Q ss_pred CCCEEEEEeCCCcEEEec
Q 010816 482 DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 482 dg~~l~s~~~D~~v~iW~ 499 (500)
+|++|++|+ |++|+||+
T Consensus 411 dg~~lasg~-d~~i~iW~ 427 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWS 427 (435)
T ss_dssp TSSCEEEEC-SSEEEECC
T ss_pred CCCEEEEEc-CCcEEEEE
Confidence 999999876 78999997
No 48
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.3e-40 Score=312.47 Aligned_cols=289 Identities=12% Similarity=0.103 Sum_probs=218.8
Q ss_pred ccEEEEEEcCCCCeEEEEeCCC-------cEEEEeCCCCce----------eEEecCCCCCEEEEEEcCCCCEEEEEeCC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDT-------TVRLWDLNTQTP----------MFKCTGHKNWVLCIAWSADGKHLVSGSKA 171 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~-------~i~iwd~~~~~~----------~~~~~~h~~~v~~v~~s~~~~~l~s~~~d 171 (500)
-||++++|+||+++||+|++|. .|++|++..... ...+.+|...|.+++++ ++.+++|+.+
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~ 92 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE 92 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence 4899999999999999998654 599999875432 13467888999988774 5677777654
Q ss_pred CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE----EEE-----ecCcccc
Q 010816 172 GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VIC-----LSGHTLA 242 (500)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~----~~~-----~~~h~~~ 242 (500)
+..++| +++.|+.+|+|++..... ... ...+...
T Consensus 93 ~~~~l~-------------------------------------s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (365)
T 4h5i_A 93 NSTKIT-------------------------------------QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDY 135 (365)
T ss_dssp CHHHHH-------------------------------------HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCC
T ss_pred CccEEE-------------------------------------EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccC
Confidence 433322 233344455555432211 000 1234456
Q ss_pred EEEEEeCCCCe-EE--EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 243 VTCVKWGGDGV-IY--TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 243 v~~~~~~~~~~-l~--t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
+.+++|+|||. ++ +++.|++|++||+.+++.+..+. |...|.+++++|+
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspd--------------------------- 187 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTD--------------------------- 187 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTT---------------------------
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccC---------------------------
Confidence 88999999985 33 45589999999999999888876 6678999999886
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC----cEEEEeCCCCce-
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK----SIKLWNGTTGKF- 394 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg----~i~lwd~~~~~~- 394 (500)
+..+++++.++.+.+|.............+|...|.+++|+|+++++++++.|+ .+++|+...+..
T Consensus 188 ---------g~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~ 258 (365)
T 4h5i_A 188 ---------GKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS 258 (365)
T ss_dssp ---------SSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE
T ss_pred ---------CceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec
Confidence 346788886665555543322222234567888999999999999999999987 688999877653
Q ss_pred ---EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc-ccCc
Q 010816 395 ---VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD-LPGH 470 (500)
Q Consensus 395 ---~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~h 470 (500)
...+.+|..+|+++ +|+|+|++||+|+.|++|+|||+++++.+.. +.+|
T Consensus 259 ~~~~~~~~~~~~~V~~~---------------------------~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH 311 (365)
T 4h5i_A 259 VLRSKQVTNRFKGITSM---------------------------DVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH 311 (365)
T ss_dssp EEEEEEEESSCSCEEEE---------------------------EECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS
T ss_pred ceeeeeecCCCCCeEeE---------------------------EECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc
Confidence 34567888888777 6799999999999999999999999998876 5899
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 471 ADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 471 ~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
...|++|+|||||++|||||.|++||||+.
T Consensus 312 ~~~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 312 SFAITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred cCCEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 999999999999999999999999999973
No 49
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.5e-39 Score=300.14 Aligned_cols=247 Identities=24% Similarity=0.421 Sum_probs=219.2
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKV 265 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~l 265 (500)
..+.+|...|.+++|+| ++..+++++.||+|++||+.++.++..+.+|..+|.++.|++++ .|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp-----~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHP-----TEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECS-----SSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECC-----CCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEE
Confidence 35678999999999987 45689999999999999999999999999999999999999876 6899999999999
Q ss_pred EeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 266 WETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 266 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
||+.+++.+..+.+|...|.+++++|+ ...+++|+.|++|++||
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~~------------------------------------~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHPT------------------------------------KPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSS------------------------------------SSEEEEEETTSCEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcCC------------------------------------CCEEEEECCCCeEEEEE
Confidence 999999999999999999999999875 34799999999999999
Q ss_pred CCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceEEEEe-CCcccEEEEEeeeeeeecCCCCce
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFVAVFR-GHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
+.........+.+|...|.+++|+| ++.+|++|+.|++|++||+.++.....+. +|...+..+.+
T Consensus 126 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~------------- 192 (304)
T 2ynn_A 126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY------------- 192 (304)
T ss_dssp GGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEE-------------
T ss_pred CCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEE-------------
Confidence 8765555567889999999999999 67999999999999999998877655554 45566665533
Q ss_pred eeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+++.+|++|+.|++|++||+++++++..+.+|...|.+++|+|++++|++|+.|++|++|+
T Consensus 193 ------------~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 193 ------------YPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp ------------CCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ------------EEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 1135788999999999999999999999999999999999999999999999999999999997
No 50
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.5e-40 Score=316.94 Aligned_cols=312 Identities=18% Similarity=0.287 Sum_probs=243.6
Q ss_pred ccCCcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCceeEEecC-----CCCCEEEEEEcCC----CCEEEEEeC
Q 010816 104 IAGHTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTG-----HKNWVLCIAWSAD----GKHLVSGSK 170 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~~----~~~l~s~~~ 170 (500)
..+|.++|.+++|+|+ ...+++++.++.|+|||+.++..+..+.. |...|.+++|+|+ +.+|++|+.
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~ 93 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS 93 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence 4589999999999994 45677777777999999998776655543 6688999999999 679999999
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe---cCccccEEEEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL---SGHTLAVTCVK 247 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~---~~h~~~v~~~~ 247 (500)
||.|++||+.+++... .+.+|...|.++.|+|. +...+++++.||.|++||+++++.+..+ .+|...|.++.
T Consensus 94 dg~i~v~d~~~~~~~~-~~~~~~~~i~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~ 168 (366)
T 3k26_A 94 RGIIRIINPITMQCIK-HYVGHGNAINELKFHPR----DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSAD 168 (366)
T ss_dssp TCEEEEECTTTCCEEE-EEESCCSCEEEEEECSS----CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEE
T ss_pred CCEEEEEEchhceEee-eecCCCCcEEEEEECCC----CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEE
Confidence 9999999999887654 46789999999999872 3458999999999999999999998888 78999999999
Q ss_pred eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 248 WGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 248 ~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
|++++ .|++++.||.|++||+++++....+... +.+.++.
T Consensus 169 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~~~~~~--------------------------------- 209 (366)
T 3k26_A 169 YDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES------YDYNPNK--------------------------------- 209 (366)
T ss_dssp ECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH------HTCCGGG---------------------------------
T ss_pred ECCCCCEEEEecCCCCEEEEECCCCcccccccee------EEecCCC---------------------------------
Confidence 99876 6889999999999999876543322210 0000100
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce------------
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF------------ 394 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~------------ 394 (500)
..+... .... .........+|...|.+++|+ +++|++++.|+.|++||+.+++.
T Consensus 210 ---~~~~~~----~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 275 (366)
T 3k26_A 210 ---TNRPFI----SQKI-----HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNV 275 (366)
T ss_dssp ---CSSCCC----CEEE-----CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCE
T ss_pred ---Cccccc----ceee-----ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcch
Confidence 000000 0000 011223345688999999998 78999999999999999987654
Q ss_pred --EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC--CCEEEEEECCCcEEEEECCCccccc----c
Q 010816 395 --VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD--SRLLLSGSKDSTLKVWDIRTQKLKQ----D 466 (500)
Q Consensus 395 --~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~s~s~d~~v~iwd~~~~~~~~----~ 466 (500)
+..+.+|...+.++ +|+|+ +++|++|+.||.|++||+.+++... .
T Consensus 276 ~~~~~~~~~~~~v~~~---------------------------~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 276 TILGRFDYSQCDIWYM---------------------------RFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp EEEEEEECSSCCSSCC---------------------------CCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred heeccccccCCcEEEE---------------------------EEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence 44555555444333 56788 9999999999999999999876544 6
Q ss_pred ccCc--ccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 467 LPGH--ADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 467 ~~~h--~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
+.+| ...|++++|+|++++|++++.||.|++|+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 7777 789999999999999999999999999973
No 51
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-37 Score=295.07 Aligned_cols=281 Identities=22% Similarity=0.412 Sum_probs=242.2
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce---eEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP---MFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~---~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
.+|.+.|.+++|+|++++|++++ |+.|++||+.++.. +..+. +|...|.+++|+|++++|++++.|+.|++||+
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 37999999999999999999998 99999999987542 23333 79999999999999999999999999999999
Q ss_pred CCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816 180 QTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (500)
Q Consensus 180 ~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~ 257 (500)
.+++. ....+..|...+.++.|.| ++..+++++.|+.|++||+++++.+..+.+|...|.++.|++++ .++++
T Consensus 127 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 201 (337)
T 1gxr_A 127 AAPTPRIKAELTSSAPACYALAISP-----DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201 (337)
T ss_dssp CCC--EEEEEEECSSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCcceeeecccCCCceEEEEECC-----CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEE
Confidence 88763 2234667888899999977 45689999999999999999999999999999999999999887 68899
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|+.|++||+++++.+..+. +...+.+++++++ +..+++++.
T Consensus 202 ~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~------------------------------------~~~l~~~~~ 244 (337)
T 1gxr_A 202 GLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT------------------------------------GEWLAVGME 244 (337)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT------------------------------------SSEEEEEET
T ss_pred ecCCcEEEEECCCCceEeeec-CCCceEEEEECCC------------------------------------CCEEEEEcC
Confidence 999999999999998877764 5667888888765 357899999
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
|+.+++||..... ...+..|...|.+++|+|++++|++++.||.|++||+.+++.+.. ..|...+.++
T Consensus 245 ~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~-~~~~~~v~~~--------- 312 (337)
T 1gxr_A 245 SSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ-SKESSSVLSC--------- 312 (337)
T ss_dssp TSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-EECSSCEEEE---------
T ss_pred CCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE-ecCCCcEEEE---------
Confidence 9999999986543 346778999999999999999999999999999999999987744 3466666665
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
+|+|++++|++++.||.|++|++
T Consensus 313 ------------------~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 313 ------------------DISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ------------------EECTTSCEEEEEETTSCEEEEEE
T ss_pred ------------------EECCCCCEEEEecCCCeEEEEEE
Confidence 67999999999999999999986
No 52
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.3e-38 Score=305.97 Aligned_cols=329 Identities=18% Similarity=0.298 Sum_probs=237.5
Q ss_pred cccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCceeEEe-------------cCCCCCEEEEEEcC-CCCEE
Q 010816 101 SATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKC-------------TGHKNWVLCIAWSA-DGKHL 165 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~~~~-------------~~h~~~v~~v~~s~-~~~~l 165 (500)
...+.+|.+.|.+++|+| ++++||+|+.||.|+|||+.++.....+ .+|...|.+++|+| ++.+|
T Consensus 36 ~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 36 RDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp EEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred eeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 345678999999999999 9999999999999999999876554332 25999999999999 77899
Q ss_pred EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEE
Q 010816 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC 245 (500)
Q Consensus 166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 245 (500)
++++.|+.|++||+.+++.... ..+...+.++.|.|.. .+...+++++.|+.|++||+++++++..+.+|...|.+
T Consensus 116 ~s~~~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~ 191 (408)
T 4a11_B 116 TSSSFDKTLKVWDTNTLQTADV--FNFEETVYSHHMSPVS--TKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILA 191 (408)
T ss_dssp EEEETTSEEEEEETTTTEEEEE--EECSSCEEEEEECSSC--SSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEE
T ss_pred EEEeCCCeEEEeeCCCCcccee--ccCCCceeeeEeecCC--CCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEE
Confidence 9999999999999998765432 2356778888887743 24458999999999999999999999999999999999
Q ss_pred EEeCCCC--eEEEEeCCCeEEEEeCCCCe-eEEEe---------------ecCCceEEEEEecCcceeeeccccCCCCCC
Q 010816 246 VKWGGDG--VIYTGSQDCTIKVWETTQGK-LIREL---------------KGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (500)
Q Consensus 246 ~~~~~~~--~l~t~~~dg~i~lwd~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (500)
++|++++ .+++|+.||.|++||++++. .+..+ ..|...|.+++++++
T Consensus 192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------- 256 (408)
T 4a11_B 192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD--------------- 256 (408)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT---------------
T ss_pred EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC---------------
Confidence 9999987 48899999999999998765 33433 456777888888764
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee----ecccCcEEEEEECCCCCEEEEEeCCCc
Q 010816 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM----TGHQQLVNHVYFSPDGQWVASASFDKS 383 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~----~~h~~~v~~l~~sp~g~~lasgs~Dg~ 383 (500)
+..+++++.|+.|++||+.......... ......+........+..+++++.|+.
T Consensus 257 ---------------------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
T 4a11_B 257 ---------------------GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST 315 (408)
T ss_dssp ---------------------SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE
T ss_pred ---------------------CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE
Confidence 3579999999999999987544321111 011111222222334566777789999
Q ss_pred EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 384 IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 384 i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
|++||+.+++.+..+.+|.+.|.++ +|+|++++|++|+.||.|++||+++++.
T Consensus 316 i~v~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 316 IAVYTVYSGEQITMLKGHYKTVDCC---------------------------VFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp EEEEETTTCCEEEEECCCSSCEEEE---------------------------EEETTTTEEEEEETTSCEEEEEECC---
T ss_pred EEEEECcCCcceeeeccCCCeEEEE---------------------------EEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 9999999999999999999999887 5699999999999999999999999877
Q ss_pred cccccCcccCEEEEEEcC-CCCEEEEEeCCCcEEEec
Q 010816 464 KQDLPGHADEVFAVDWSP-DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 464 ~~~~~~h~~~V~~l~~s~-dg~~l~s~~~D~~v~iW~ 499 (500)
+.....+.. ...+.+ +...+.+++.|+.+++|.
T Consensus 369 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 369 VPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp -------------------------------------
T ss_pred cCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 655443322 122333 334556788899999996
No 53
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-38 Score=297.67 Aligned_cols=246 Identities=24% Similarity=0.431 Sum_probs=216.4
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (500)
Q Consensus 142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~ 221 (500)
....+.+|.+.|.+++|+|++++|++|+.||+|++||..+++... .+..|...|.++.|+| ++..+++|+.|+.
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~s~~~d~~ 120 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH-AIPLRSSWVMTCAYAP-----SGNYVACGGLDNI 120 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE-EEECSSSCEEEEEECT-----TSSEEEEEETTCE
T ss_pred hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce-EeecCCccEEEEEECC-----CCCEEEEEeCCCe
Confidence 445788999999999999999999999999999999998887543 4667888999999987 4568999999999
Q ss_pred EEEEECCCC----eEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeee
Q 010816 222 ARIWDVSLR----KCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 222 v~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
+++||+.+. .....+.+|...|.++.|.+++.+++++.|++|++||+.+++.+..
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~--------------------- 179 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTT--------------------- 179 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE---------------------
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEE---------------------
Confidence 999999765 4566788999999999999999999999999999999987654332
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las 377 (500)
+.+|...|.+++|+|++++|++
T Consensus 180 ----------------------------------------------------------~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 180 ----------------------------------------------------------FTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ----------------------------------------------------------ECCCSSCEEEEEECTTSSEEEE
T ss_pred ----------------------------------------------------------EcCCCCceEEEEECCCCCEEEE
Confidence 2356777999999999999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 378 gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
|+.|+.|++||+++++++..+.+|...|.++ +|+|++.+|++|+.|++|++||
T Consensus 202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v---------------------------~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 202 GACDASAKLWDVREGMCRQTFTGHESDINAI---------------------------CFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEE---------------------------EECTTSSEEEEEETTSCEEEEE
T ss_pred EeCCCcEEEEECCCCeeEEEEcCCcCCEEEE---------------------------EEcCCCCEEEEEcCCCcEEEEE
Confidence 9999999999999999999999999999887 5699999999999999999999
Q ss_pred CCCcccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 458 IRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 458 ~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+++++....+. .+...|.+++|+|+|++|++|+.|+.|++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWD 298 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEE
Confidence 99877665543 3345799999999999999999999999997
No 54
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=308.79 Aligned_cols=298 Identities=20% Similarity=0.346 Sum_probs=244.3
Q ss_pred cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC----CCCCc------cc---ccccC-----
Q 010816 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP----QTGKP------SG---NPLSG----- 191 (500)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~----~~~~~------~~---~~~~~----- 191 (500)
.+.+|++...........|.+.|.+++|+|+++ +|++|+.|+.|++||+ .+++. .. ..+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (425)
T 1r5m_A 26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG 105 (425)
T ss_dssp --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence 456788876666655566789999999999999 9999999999999999 87762 11 12222
Q ss_pred -cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC
Q 010816 192 -HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (500)
Q Consensus 192 -~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~ 269 (500)
|...|.++.|+| ++..+++++.||.|++|| ..++.+..+.+|...|.++.|++++ .|++++.|+.|++||+.
T Consensus 106 ~~~~~v~~~~~s~-----~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 179 (425)
T 1r5m_A 106 KTTNQVTCLAWSH-----DGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI 179 (425)
T ss_dssp --CBCEEEEEECT-----TSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT
T ss_pred CCCCceEEEEEcC-----CCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC
Confidence 677999999987 456899999999999999 6778888899999999999999887 58899999999999999
Q ss_pred CCeeEEEeecCCce---------------EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 270 QGKLIRELKGHGHW---------------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 270 ~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
+++.+..+..+... +.++.+++ ...+++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~ 222 (425)
T 1r5m_A 180 SGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD-------------------------------------DDKFVI 222 (425)
T ss_dssp TTEEEEEECCC---------------CCCBSCCEEEE-------------------------------------TTEEEE
T ss_pred CCcEEEEeeccccCccceeeccccCCcceeeEEEEcC-------------------------------------CCEEEE
Confidence 99988887766544 33333322 346899
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
++.|+.|++||+... .....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...+.++
T Consensus 223 ~~~~g~i~~~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~------ 295 (425)
T 1r5m_A 223 PGPKGAIFVYQITEK-TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSA------ 295 (425)
T ss_dssp ECGGGCEEEEETTCS-SCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEE------
T ss_pred EcCCCeEEEEEcCCC-ceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEE------
Confidence 999999999998754 3455677899999999999999999999999999999999999999999999988877
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
+|+|++ ++++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.
T Consensus 296 ---------------------~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 353 (425)
T 1r5m_A 296 ---------------------SWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ 353 (425)
T ss_dssp ---------------------EEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred ---------------------EECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence 568999 9999999999999999999998889999999999999999999999999999
Q ss_pred EEEecC
Q 010816 495 LKLWMG 500 (500)
Q Consensus 495 v~iW~~ 500 (500)
|++|+.
T Consensus 354 i~i~~~ 359 (425)
T 1r5m_A 354 VNVYDL 359 (425)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999973
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-40 Score=316.91 Aligned_cols=299 Identities=14% Similarity=0.216 Sum_probs=228.7
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC--ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ--TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.|.++|.+++|+|++++||+|+.|+.|+|||+.++ .++..+.+|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 36779999999999999999999999999999987 6677788999999999999999999999999999999998876
Q ss_pred --cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe---EEEEecC-ccccEEEEEeCCCC-eEEE
Q 010816 184 --PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK---CVICLSG-HTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 184 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~---~~~~~~~-h~~~v~~~~~~~~~-~l~t 256 (500)
.....+.+|...|.++.|+| ++..+++++.|+.|++||++.++ +...+.+ |...|.+++|++++ .|++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSP-----NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCT-----TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred ceeeeeEecccCCceEEEEECC-----CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 11234678999999999987 45689999999999999999877 4667777 99999999999986 6889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
++.|+.|++||+..+.........
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~-------------------------------------------------------- 187 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEAS-------------------------------------------------------- 187 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSC--------------------------------------------------------
T ss_pred EeCCCEEEEEEEEecccCCCcccc--------------------------------------------------------
Confidence 999999999998754321100000
Q ss_pred CCCeEEEEcCCC-CCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce----EEEEeCCcccEEEEEee
Q 010816 337 DDFTMFLWEPAV-SKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF----VAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 337 ~d~~v~~wd~~~-~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~----~~~~~~h~~~v~~~~~~ 411 (500)
.|.... .......+ +|...|.+++|+|+|++|++++.||.|++||+.+++. +..+.+|..++.++
T Consensus 188 ------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~--- 257 (377)
T 3dwl_C 188 ------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSL--- 257 (377)
T ss_dssp ------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEE---
T ss_pred ------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEE---
Confidence 000000 00111223 7889999999999999999999999999999999987 77888999988887
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc--cc-------------------------
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK--LK------------------------- 464 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~------------------------- 464 (500)
+|+|++++|++|+.|+.+ +|+..... ..
T Consensus 258 ------------------------~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (377)
T 3dwl_C 258 ------------------------LWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEE 312 (377)
T ss_dssp ------------------------EEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-
T ss_pred ------------------------EEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccc
Confidence 568999999999877766 66654211 00
Q ss_pred -------------------------ccccCcccCEEEEEEcCCC-C---EEEEEeCCCcEEEecC
Q 010816 465 -------------------------QDLPGHADEVFAVDWSPDG-E---KVASGGKDRVLKLWMG 500 (500)
Q Consensus 465 -------------------------~~~~~h~~~V~~l~~s~dg-~---~l~s~~~D~~v~iW~~ 500 (500)
.....|.+.|+++.+.+++ . .|+|||.||+|++|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 313 GPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp ------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0112399999999976543 3 6999999999999974
No 56
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.1e-37 Score=302.58 Aligned_cols=277 Identities=29% Similarity=0.517 Sum_probs=231.2
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
+..|+|+++ +.||+|. |++|+|||..+++....+ .+|...|++|+|+|+|++|++|+.||+|++||+++++... .
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~-~ 184 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N 184 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-E
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE-E
Confidence 567999975 5777765 999999999999876544 5788899999999999999999999999999999987654 4
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw 266 (500)
+.+|...+.++.|++ ..+++|+.|+.+++||.... ..+..+.+|...+..+.|.+++ .+++++.|+.+++|
T Consensus 185 ~~~h~~~v~~~s~~~-------~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~ 257 (420)
T 4gga_A 185 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257 (420)
T ss_dssp ECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred EeCCCCceEEEeeCC-------CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEE
Confidence 678999999988854 57999999999999998864 4567788999999999999876 58889999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|..+++..
T Consensus 258 ~~~~~~~~------------------------------------------------------------------------ 265 (420)
T 4gga_A 258 PSAPGEGG------------------------------------------------------------------------ 265 (420)
T ss_dssp ESSCCSSC------------------------------------------------------------------------
T ss_pred eecccccc------------------------------------------------------------------------
Confidence 98764311
Q ss_pred CCCCCCceeeecccCcEEEEEECCCC-CEEEE--EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDG-QWVAS--ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g-~~las--gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
.........|...|.+++|+|++ .++++ |+.|++|++||+.+++++..+..|.. +.++
T Consensus 266 ---~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~-v~~~--------------- 326 (420)
T 4gga_A 266 ---WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSI--------------- 326 (420)
T ss_dssp ---SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC-EEEE---------------
T ss_pred ---ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc-eeee---------------
Confidence 01122344677889999999965 56655 45799999999999999888776643 3333
Q ss_pred eeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.|+|+++.+++++ .|+.|+|||+.+++.+..+.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus 327 ------------~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 327 ------------LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp ------------EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ------------eecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5689999888765 7999999999999999999999999999999999999999999999999973
No 57
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.6e-38 Score=305.81 Aligned_cols=310 Identities=19% Similarity=0.272 Sum_probs=253.8
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCcccccc------------cCccc
Q 010816 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKPSGNPL------------SGHKK 194 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~------------~~~~~ 194 (500)
.++.+++|+++.......+.+|.+.|.+++|+| ++++|++|+.||.|++||+.+++...... .+|..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred ccCcceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 355688898888888888889999999999999 99999999999999999999876543221 36999
Q ss_pred ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC----eEEEEeCCCeEEEEeCCC
Q 010816 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG----VIYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~t~~~dg~i~lwd~~~ 270 (500)
.|.++.|.|. +...+++++.|+.|++||+.+++....+. +...+.++.|.+.+ .+++++.|+.|++||+.+
T Consensus 101 ~v~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 101 SVETVQWYPH----DTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp CEEEEEECTT----CTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cEEEEEEccC----CCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 9999999873 33579999999999999999998887765 67788899887643 689999999999999999
Q ss_pred CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~ 350 (500)
++.+..+..|...|.+++++++. ...+++++.|+.|++||++...
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRY-----------------------------------DYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSC-----------------------------------TTEEEEEETTSCEEEEETTCSS
T ss_pred cceeeeecCCCCcEEEEEECCCC-----------------------------------CcEEEEEcCCCcEEEEECCCCC
Confidence 99999999999999999998752 2258899999999999987654
Q ss_pred CCceee---------------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 351 QPKTRM---------------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 351 ~~~~~~---------------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
.....+ .+|...|.+++|+|++++|++++.||.|++||+.+++....+.++.....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--------- 291 (408)
T 4a11_B 221 GCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS--------- 291 (408)
T ss_dssp CCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC---------
T ss_pred cccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc---------
Confidence 333332 57889999999999999999999999999999999876544333221100
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
............+..+++++.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.||.|
T Consensus 292 -------------~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i 358 (408)
T 4a11_B 292 -------------KKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNI 358 (408)
T ss_dssp -------------SSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred -------------cccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeE
Confidence 0000000112345567777889999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 010816 496 KLWM 499 (500)
Q Consensus 496 ~iW~ 499 (500)
++|+
T Consensus 359 ~iw~ 362 (408)
T 4a11_B 359 LAWV 362 (408)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
No 58
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-38 Score=302.39 Aligned_cols=275 Identities=15% Similarity=0.186 Sum_probs=237.4
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEecCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEeC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCTGHKNWVLCIAWSADGK-HLVSGSKAGELQCWDP 179 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~d~~i~~wd~ 179 (500)
..+|.+.|.+++|+|++++|++++.|+.|+|||+.++. +.....+|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~ 86 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL 86 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence 45899999999999999999999999999999998776 3445568999999999999999 9999999999999999
Q ss_pred -CCCCcccccccC--cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC---------CeEEEEecCccccEEEEE
Q 010816 180 -QTGKPSGNPLSG--HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL---------RKCVICLSGHTLAVTCVK 247 (500)
Q Consensus 180 -~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~---------~~~~~~~~~h~~~v~~~~ 247 (500)
.+++. ..+.+ |...|.++.|.| ...+++++.|+.|++||++. ++++..+. |...|.++.
T Consensus 87 ~~~~~~--~~~~~~~~~~~v~~l~~~~------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 87 IGSPSF--QALTNNEANLGICRICKYG------DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp SSSSSE--EECBSCCCCSCEEEEEEET------TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred ccCCce--EeccccCCCCceEEEEeCC------CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 87754 34667 999999999987 25899999999999999987 66665555 888999999
Q ss_pred eCCCCeEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 248 WGGDGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 248 ~~~~~~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
|++++ +++++.|+.|++||+++ +...
T Consensus 158 ~~~~~-l~~~~~d~~i~i~d~~~~~~~~---------------------------------------------------- 184 (342)
T 1yfq_A 158 TNSSR-LIVGMNNSQVQWFRLPLCEDDN---------------------------------------------------- 184 (342)
T ss_dssp ECSSE-EEEEESTTEEEEEESSCCTTCC----------------------------------------------------
T ss_pred ecCCc-EEEEeCCCeEEEEECCcccccc----------------------------------------------------
Confidence 99887 88999999999999875 3210
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCC------ceEEEEe
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTG------KFVAVFR 399 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~------~~~~~~~ 399 (500)
.......|...+.+++|+| ++++|++++.||.|++|++... +....++
T Consensus 185 -------------------------~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~ 239 (342)
T 1yfq_A 185 -------------------------GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR 239 (342)
T ss_dssp -------------------------CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred -------------------------ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeee
Confidence 0011224556789999999 9999999999999999999887 7778888
Q ss_pred CCcc---------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc
Q 010816 400 GHVG---------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 470 (500)
Q Consensus 400 ~h~~---------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h 470 (500)
+|.. ++.++ +|+|++++|++|+.||.|++||+.+++.+..+.+|
T Consensus 240 ~~~~~~~~~~~~~~i~~~---------------------------~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 292 (342)
T 1yfq_A 240 CHRLNLKDTNLAYPVNSI---------------------------EFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292 (342)
T ss_dssp CCCCCTTCCSSCCCEEEE---------------------------EECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred cccccccccccceeEEEE---------------------------EEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence 8765 66665 67999999999999999999999999999999998
Q ss_pred -ccCEEEEEEcCCCCEEEEEeCCCc
Q 010816 471 -ADEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 471 -~~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
...|.+++ |++++|++++.|++
T Consensus 293 h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 293 NEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp SSSEEEEEE--ECSSEEEEEEECTH
T ss_pred cCCCceEec--CCCCeEEEEecCCc
Confidence 99999999 99999999999998
No 59
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.6e-37 Score=293.46 Aligned_cols=273 Identities=22% Similarity=0.362 Sum_probs=229.0
Q ss_pred CeeeEEEEEEeecc----------eEeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----
Q 010816 77 SVEKVLSIVYQPQA----------VFRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---- 140 (500)
Q Consensus 77 ~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---- 140 (500)
+...+..+.+.|.. ..+++.. ......+..|...|.+++|+|++.+||+|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~ 142 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN 142 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc
Confidence 34456677776643 3445543 2344566789999999999999999999999999999998643
Q ss_pred --ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816 141 --TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (500)
Q Consensus 141 --~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~ 218 (500)
.....+.+|...|.+++|+|++..|++++.|++|++||+++++... .+.+|...|.++.|.|. .++..|++|+.
T Consensus 143 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~---~~g~~l~sgs~ 218 (354)
T 2pbi_B 143 MAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQ-SFHGHGADVLCLDLAPS---ETGNTFVSGGC 218 (354)
T ss_dssp SGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEE-EEECCSSCEEEEEECCC---SSCCEEEEEET
T ss_pred ccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEE-EEcCCCCCeEEEEEEeC---CCCCEEEEEeC
Confidence 2345667899999999999999999999999999999999887643 56789999999998763 23468999999
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeee
Q 010816 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
||.|++||+++++++..+.+|...|.+++|+|++ .|++|+.|++|++||+++++.+..+..
T Consensus 219 Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~------------------ 280 (354)
T 2pbi_B 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSK------------------ 280 (354)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC------------------
T ss_pred CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC------------------
Confidence 9999999999999999999999999999999876 688999999999999987654322110
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las 377 (500)
..+...+.+++|+|+|++|++
T Consensus 281 -----------------------------------------------------------~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 281 -----------------------------------------------------------ESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp -----------------------------------------------------------TTCCSCEEEEEECTTSSEEEE
T ss_pred -----------------------------------------------------------CCcccceeEEEEeCCCCEEEE
Confidence 011234788999999999999
Q ss_pred EeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 378 ASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 378 gs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
|+.|+.|++||+.+++.+..+.+|.++|.++ +|+|+|++|++|+.|++|+||+
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l---------------------------~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILFGHENRVSTL---------------------------RVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEECCCCcEEEE---------------------------EECCCCCEEEEEcCCCCEEecC
Confidence 9999999999999999999999999999888 5699999999999999999995
No 60
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-39 Score=314.56 Aligned_cols=317 Identities=17% Similarity=0.267 Sum_probs=246.4
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC----CceeEEecCCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEeC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT----QTPMFKCTGHKNWVLCIAWSAD-GKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~----~~~~~~~~~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~wd~ 179 (500)
.+|...|.+++|+|++++||+|+.|+.|++||+.+ ...+..+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 36899999999999999999999999999999987 4577788899999999999998 899999999999999999
Q ss_pred CCCC------ccc--ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc------cccEEE
Q 010816 180 QTGK------PSG--NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH------TLAVTC 245 (500)
Q Consensus 180 ~~~~------~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h------~~~v~~ 245 (500)
.+++ ... ....+|...|.++.|+|.. ...+++++.|+.|++||+++++++..+..| ...|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~ 219 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL----AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSV 219 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC----TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCC----CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEE
Confidence 8876 222 1246788999999998731 358999999999999999999998888776 789999
Q ss_pred EEeCCCC--eEEEEeCCC---eEEEEeCCCC-eeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 246 VKWGGDG--VIYTGSQDC---TIKVWETTQG-KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 246 ~~~~~~~--~l~t~~~dg---~i~lwd~~~~-~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
++|++++ .+++++.|+ .|++||++++ ..+..+. .|...|.++++++.
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------------------- 273 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQ-------------------------- 273 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSS--------------------------
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCC--------------------------
Confidence 9999986 688999998 9999999986 5667777 89999999998872
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceEEE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~~~~ 397 (500)
.+..+++++.|+.|++||+... .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.++.....
T Consensus 274 ---------~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~ 343 (416)
T 2pm9_A 274 ---------DEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLD 343 (416)
T ss_dssp ---------CSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSC
T ss_pred ---------CCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcc
Confidence 1346899999999999998654 4456678999999999999999 8999999999999999987654221
Q ss_pred EeC--CcccEEEEE-eeeee----eecCCC-CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 398 FRG--HVGPVYQIR-FELIY----CFRYPS-NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 398 ~~~--h~~~v~~~~-~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
... ......... +.... ..+... ...........+..++|+|+|++|++|+.|+.|+||++.+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 344 EQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp C----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 111 000000000 00000 000000 00000001223445689999999999999999999998763
No 61
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.2e-39 Score=299.66 Aligned_cols=253 Identities=21% Similarity=0.369 Sum_probs=207.5
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEe
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~~wd 178 (500)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++. .+..+.+|.+.|.+++|++ ++++|++|+.|++|++||
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 467999999999999999999999999999999998764 4567889999999999986 489999999999999999
Q ss_pred CCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE---EEEecCccccEEEEEeCCC---
Q 010816 179 PQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC---VICLSGHTLAVTCVKWGGD--- 251 (500)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~---~~~~~~h~~~v~~~~~~~~--- 251 (500)
+++++. ....+.+|...|.+++|+|.. .+..+++|+.|++|++||++.+.. ...+.+|...|.++.|+++
T Consensus 88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~---~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 88 EENGTWEKSHEHAGHDSSVNSVCWAPHD---YGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp CSSSCCCEEEEECCCSSCCCEEEECCTT---TCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred CCCCcceEEEEccCCCCceEEEEECCCC---CCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 988742 223467899999999998742 245899999999999999987532 3456789999999999886
Q ss_pred ---------------CeEEEEeCCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHH
Q 010816 252 ---------------GVIYTGSQDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEM 313 (500)
Q Consensus 252 ---------------~~l~t~~~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (500)
..|++|+.|++|++||++.+ +.+..+.+|..+|.+++++|+..
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~------------------- 225 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG------------------- 225 (316)
T ss_dssp ------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-------------------
T ss_pred ccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-------------------
Confidence 36899999999999999755 45677889999999999987521
Q ss_pred HHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC---CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 314 KKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS---KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~---~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
.....+++++.|++|++|++... ......+.+|...|.+++|+|+|++||+++.|+.|++|+..
T Consensus 226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 01357999999999999997652 11234467789999999999999999999999999999975
No 62
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=306.10 Aligned_cols=270 Identities=30% Similarity=0.560 Sum_probs=235.7
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+|...|.+++| ++++|++|+.||+|++||+.+++....+.+|...|.+++| ++++|++|+.||+|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 467788999887 8999999999999999999999999999999999999999 788999999999999999999876
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE---EEecCccccEEEEEeCCCCeEEEEeCCC
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV---ICLSGHTLAVTCVKWGGDGVIYTGSQDC 261 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~---~~~~~h~~~v~~~~~~~~~~l~t~~~dg 261 (500)
.. .+.+|...|.++.|++ ..+++|+.||.|++||++++... ..+.+|...|.++.|. ...+++|+.||
T Consensus 206 ~~-~~~~h~~~v~~l~~~~-------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg 276 (435)
T 1p22_A 206 LN-TLIHHCEAVLHLRFNN-------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD-DKYIVSASGDR 276 (435)
T ss_dssp EE-EECCCCSCEEEEECCT-------TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE-TTEEEEEETTS
T ss_pred EE-EEcCCCCcEEEEEEcC-------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC-CCEEEEEeCCC
Confidence 54 4678999999999853 48999999999999999887654 6678999999999994 45889999999
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
.|++||+++++.+..+
T Consensus 277 ~i~vwd~~~~~~~~~~---------------------------------------------------------------- 292 (435)
T 1p22_A 277 TIKVWNTSTCEFVRTL---------------------------------------------------------------- 292 (435)
T ss_dssp EEEEEETTTCCEEEEE----------------------------------------------------------------
T ss_pred eEEEEECCcCcEEEEE----------------------------------------------------------------
Confidence 9999998876554332
Q ss_pred EEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816 342 FLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 421 (500)
.+|...|.+++| ++++|++|+.||.|++||+.+++++..+.+|...+.++.
T Consensus 293 ---------------~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~------------ 343 (435)
T 1p22_A 293 ---------------NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIR------------ 343 (435)
T ss_dssp ---------------ECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE------------
T ss_pred ---------------cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEE------------
Confidence 245556777777 478999999999999999999999999999999988773
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc---------ccccccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK---------LKQDLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
| ++.+|++|+.||.|++||+++++ ....+.+|.+.|++++| ++++|++|+.|
T Consensus 344 ---------------~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~D 404 (435)
T 1p22_A 344 ---------------F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHD 404 (435)
T ss_dssp ---------------C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSS
T ss_pred ---------------e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCC
Confidence 2 78899999999999999997765 66778899999999999 77899999999
Q ss_pred CcEEEec
Q 010816 493 RVLKLWM 499 (500)
Q Consensus 493 ~~v~iW~ 499 (500)
|+|++|+
T Consensus 405 g~i~iwd 411 (435)
T 1p22_A 405 DTILIWD 411 (435)
T ss_dssp SEEEEEC
T ss_pred CEEEEEE
Confidence 9999997
No 63
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-37 Score=290.33 Aligned_cols=259 Identities=24% Similarity=0.429 Sum_probs=211.5
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.+|...|.+++|+|++++|++|+.|++|+|||+.+++++..+.+|...|.+++|+|++.+|++|+.|++|++||++
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~ 137 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137 (319)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCcccccccCcccceEEEEeeeeecC-CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLN-APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
.. .. ..+.+|...|.++.|.|.... .+...+++++.|+.|++||++..+....+.+|...|.+++|++++ .|++|+
T Consensus 138 ~~-~~-~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~ 215 (319)
T 3frx_A 138 GQ-CL-ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG 215 (319)
T ss_dssp SC-EE-EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEE
T ss_pred CC-eE-EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEe
Confidence 43 22 346789999999999875321 234579999999999999999999999999999999999999987 588999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|++|++||+.+++.+..+.
T Consensus 216 ~dg~i~iwd~~~~~~~~~~~------------------------------------------------------------ 235 (319)
T 3frx_A 216 KDGEIMLWNLAAKKAMYTLS------------------------------------------------------------ 235 (319)
T ss_dssp TTCEEEEEETTTTEEEEEEE------------------------------------------------------------
T ss_pred CCCeEEEEECCCCcEEEEec------------------------------------------------------------
Confidence 99999999998765443221
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
+...|.+++|+|++.+|++++.+ .+++|++..+..+..++.+....
T Consensus 236 --------------------~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~------------- 281 (319)
T 3frx_A 236 --------------------AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY------------- 281 (319)
T ss_dssp --------------------CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC-------------
T ss_pred --------------------CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc-------------
Confidence 12357899999999999988765 59999998877766554321100
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
.......+..++|+|+|++|++|+.|+.|+|||+.+.
T Consensus 282 ------~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 282 ------SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp ------CGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred ------ccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 0000111233478999999999999999999998653
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.8e-37 Score=301.25 Aligned_cols=292 Identities=19% Similarity=0.345 Sum_probs=240.1
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~ 182 (500)
..+|.+.+....+++++..+++++.|+.|++||+.++.....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 346776654444444456789999999999999999887766654 8899999999999999999999999999999988
Q ss_pred CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEEEecCccccEEEEEeCCCC-eEEEEeCC
Q 010816 183 KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 183 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
+... .+.+|...|.++.|.+ ..+++|+.||.|++||++ ....+..+.+|...|.++.|++++ .|++|+.|
T Consensus 167 ~~~~-~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d 238 (401)
T 4aez_A 167 TKLR-TMAGHQARVGCLSWNR-------HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND 238 (401)
T ss_dssp CEEE-EECCCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred eEEE-EecCCCCceEEEEECC-------CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence 7554 4668999999999953 489999999999999998 567788889999999999999886 68899999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CC
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD 338 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d 338 (500)
+.|++||+++++.+..+..|...|.+++++++. ...+++++ .|
T Consensus 239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~-----------------------------------~~ll~~~~gs~d 283 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ-----------------------------------SNLLATGGGTMD 283 (401)
T ss_dssp SCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-----------------------------------TTEEEEECCTTT
T ss_pred CeEEEccCCCCCccEEecCCcceEEEEEECCCC-----------------------------------CCEEEEecCCCC
Confidence 999999999999999999999999999998752 24567755 79
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE--eCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeee
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA--SFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg--s~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~ 414 (500)
+.|++||...... ...+ .+...|.+++|+|++++|+++ +.||.|++||+.+++... .+.+|.+.|.++
T Consensus 284 ~~i~i~d~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~------ 355 (401)
T 4aez_A 284 KQIHFWNAATGAR-VNTV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS------ 355 (401)
T ss_dssp CEEEEEETTTCCE-EEEE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEE------
T ss_pred CEEEEEECCCCCE-EEEE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEE------
Confidence 9999999875432 2233 466789999999999999994 489999999999876654 466888877766
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 467 (500)
+|+|+|++|++++.||.|++||+.+++.+...
T Consensus 356 ---------------------~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 356 ---------------------ALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ---------------------EECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred ---------------------EECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 67999999999999999999999988776543
No 65
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.5e-38 Score=311.80 Aligned_cols=306 Identities=15% Similarity=0.291 Sum_probs=232.9
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCC------------CCEEEEEEcCCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHK------------NWVLCIAWSADG 162 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~------------~~v~~v~~s~~~ 162 (500)
.|.+.|.+++|+|+|++||+|+.||.|+|||+.++. ....+.+|. ..|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 468899999999999999999999999999998766 466788998 889999999998
Q ss_pred --CEEEEEeCCCeEEEEeCCCCCcc---------------------------------------cccccCcccceEEEEe
Q 010816 163 --KHLVSGSKAGELQCWDPQTGKPS---------------------------------------GNPLSGHKKWITGISW 201 (500)
Q Consensus 163 --~~l~s~~~d~~i~~wd~~~~~~~---------------------------------------~~~~~~~~~~v~~~~~ 201 (500)
.+|++++.|++|++||+.+++.. .....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 79999999999999998653321 0114679999999999
Q ss_pred eeeecCCCCceEEEEeCCCcEEEEECCC-CeEEE-------EecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCC
Q 010816 202 EPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVI-------CLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQG 271 (500)
Q Consensus 202 ~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~ 271 (500)
+| ++..+++| .|+.|++||++. ++++. .+.+|...|.+++|++++ .|++|+.||.|++||++++
T Consensus 186 ~~-----~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 186 NS-----DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CT-----TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred cC-----CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 87 44678888 899999999984 44444 256899999999999985 7999999999999999887
Q ss_pred ee----EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 272 KL----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 272 ~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
+. +..+..|..+
T Consensus 260 ~~~~~~~~~~~~~~~~---------------------------------------------------------------- 275 (447)
T 3dw8_B 260 ALCDRHSKLFEEPEDP---------------------------------------------------------------- 275 (447)
T ss_dssp SSSCTTCEEECCC-------------------------------------------------------------------
T ss_pred ccccceeeEeccCCCc----------------------------------------------------------------
Confidence 64 3333222110
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
.....+.+|...|.+++|+|+|++|++++. +.|++||+.+ ++.+..+.+|...+..+.. .+..
T Consensus 276 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~------~~~~------ 339 (447)
T 3dw8_B 276 ---SNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS------LYEN------ 339 (447)
T ss_dssp -----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH------HHHT------
T ss_pred ---cccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc------cccc------
Confidence 001123456778999999999999999999 9999999997 8888888887542210000 0000
Q ss_pred eccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc---------------------------------CcccC
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP---------------------------------GHADE 473 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---------------------------------~h~~~ 473 (500)
+.-.....++|+|++++|++|+.||.|++||+.+++... +. .+...
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKK 418 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSC
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCcccccccccccccCCc
Confidence 000001124789999999999999999999998876532 11 23457
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 474 VFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 474 V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|..++|+|+|+.||+++.++ +++|.
T Consensus 419 i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 419 ILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp CCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred eeEEEECCCCCEEEEEecce-eeeec
Confidence 89999999999999999887 66664
No 66
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.5e-36 Score=283.40 Aligned_cols=277 Identities=28% Similarity=0.502 Sum_probs=224.7
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
..+|+||+++ +||+| .|++|+|||+.+++.+..+ .+|...|.+++|+|++++|++|+.|++|++||+++++... .
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~-~ 104 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR-N 104 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-E
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEE-E
Confidence 4678999986 67766 5999999999999877654 4788899999999999999999999999999999987654 4
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEE
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVW 266 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lw 266 (500)
+.+|...+.++.+.+ ..+++++.++.+++|+.... ..+..+.+|...+.++.+.+++ .+++++.|++|++|
T Consensus 105 ~~~h~~~~~~~~~~~-------~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 177 (318)
T 4ggc_A 105 MTSHSARVGSLSWNS-------YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177 (318)
T ss_dssp EECCSSCEEEEEEET-------TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecCccceEEEeecCC-------CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEE
Confidence 678888887766543 57999999999999998765 4566788999999999998876 68899999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|+++++...
T Consensus 178 d~~~~~~~~----------------------------------------------------------------------- 186 (318)
T 4ggc_A 178 PSAPGEGGW----------------------------------------------------------------------- 186 (318)
T ss_dssp ESSCBTTBS-----------------------------------------------------------------------
T ss_pred ECCCCcccc-----------------------------------------------------------------------
Confidence 987653210
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCC-E--EEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQ-W--VASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY 423 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~-~--lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 423 (500)
........|...|.+++++|++. . +++++.|+.|++||........... +...+..+
T Consensus 187 ----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~--------------- 246 (318)
T 4ggc_A 187 ----VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSI--------------- 246 (318)
T ss_dssp ----CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEE---------------
T ss_pred ----cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeee---------------
Confidence 01112234556788899998664 3 3567789999999998887665443 33444433
Q ss_pred eeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 424 CVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 424 ~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.|+|++..+++++ .|+.|++||+++++.+..+.+|.+.|++++|+|||++|+|||.|++|+||+.
T Consensus 247 ------------~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 247 ------------LWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ------------EEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ------------eecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5688888887765 7999999999999999999999999999999999999999999999999973
No 67
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-37 Score=293.16 Aligned_cols=250 Identities=25% Similarity=0.476 Sum_probs=209.9
Q ss_pred eeEEecCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeC
Q 010816 142 PMFKCTGHKN-WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASK 218 (500)
Q Consensus 142 ~~~~~~~h~~-~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~ 218 (500)
.+..+.+|.. .|.+++|+|+|++||+|+.|++|++||..++... .....+|...|.+++|+| ++.++++|+.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp-----~g~~l~s~s~ 81 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSP-----CGNYLASASF 81 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECT-----TSSEEEEEET
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECC-----CCCEEEEEEC
Confidence 4556788987 9999999999999999999999999999876532 223468999999999987 4568999999
Q ss_pred CCcEEEEECCCC--eEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 219 DGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 219 dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
|+++++||+..+ +++..+.+|...|.+++|++++ .|++|+.|++|++||+.++.....
T Consensus 82 D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~------------------- 142 (345)
T 3fm0_A 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC------------------- 142 (345)
T ss_dssp TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE-------------------
T ss_pred CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE-------------------
Confidence 999999998876 5678899999999999999986 688999999999999865421110
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 375 (500)
...+.+|...|.+++|+|++++|
T Consensus 143 ---------------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 143 ---------------------------------------------------------VSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp ---------------------------------------------------------EEEECCCCSCEEEEEECSSSSCE
T ss_pred ---------------------------------------------------------EEEecCcCCCeEEEEECCCCCEE
Confidence 11234677889999999999999
Q ss_pred EEEeCCCcEEEEeCCCCc--eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcE
Q 010816 376 ASASFDKSIKLWNGTTGK--FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTL 453 (500)
Q Consensus 376 asgs~Dg~i~lwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v 453 (500)
++|+.|+.|++||..+++ +...+.+|...|.++ +|+|+|++|++|+.|++|
T Consensus 166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l---------------------------~~sp~g~~l~s~s~D~~v 218 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDDWVCCATLEGHESTVWSL---------------------------AFDPSGQRLASCSDDRTV 218 (345)
T ss_dssp EEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEE---------------------------EECTTSSEEEEEETTSCE
T ss_pred EEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEE---------------------------EECCCCCEEEEEeCCCeE
Confidence 999999999999998875 457889999999887 569999999999999999
Q ss_pred EEEECCCc---------------cccccccC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 454 KVWDIRTQ---------------KLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 454 ~iwd~~~~---------------~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|||.... +++..+.+ |...|++++|+|++..|++++.|+.|++|+
T Consensus 219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~ 280 (345)
T 3fm0_A 219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ 280 (345)
T ss_dssp EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred EEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 99996432 12223444 888999999999999999999999999995
No 68
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.8e-37 Score=293.12 Aligned_cols=299 Identities=15% Similarity=0.171 Sum_probs=231.4
Q ss_pred cccccCCcccEEEEEEcCC---CCeEEEEeCCCcEEEEeCCC-Ccee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 010816 101 SATIAGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNT-QTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQ 175 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~---~~~lat~~~d~~i~iwd~~~-~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~ 175 (500)
...+.+|.+.|.+++|+|+ |++||+|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 32 ~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~ 111 (368)
T 3mmy_A 32 IEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAK 111 (368)
T ss_dssp EECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEE
Confidence 3467899999999999999 69999999999999999987 4444 67789999999999999999999999999999
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEE
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 255 (500)
+||+.+++... ..+|...|.++.|.+ ..++..+++++.|+.|++||+++++++..+..|. .+.++.+..+ .++
T Consensus 112 iwd~~~~~~~~--~~~~~~~v~~~~~~~---~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~-~~~ 184 (368)
T 3mmy_A 112 MWDLSSNQAIQ--IAQHDAPVKTIHWIK---APNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIYP-MAV 184 (368)
T ss_dssp EEETTTTEEEE--EEECSSCEEEEEEEE---CSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEETT-EEE
T ss_pred EEEcCCCCcee--eccccCceEEEEEEe---CCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecCC-eeE
Confidence 99999887543 567899999999954 2245679999999999999999998888887765 5666666654 677
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+++.|+.+++||+...........
T Consensus 185 ~~~~~~~i~~~~~~~~~~~~~~~~-------------------------------------------------------- 208 (368)
T 3mmy_A 185 VATAERGLIVYQLENQPSEFRRIE-------------------------------------------------------- 208 (368)
T ss_dssp EEEGGGCEEEEECSSSCEEEEECC--------------------------------------------------------
T ss_pred EEeCCCcEEEEEeccccchhhhcc--------------------------------------------------------
Confidence 888999999999875432111000
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC----CEEEEEeCCCcEEEEeCCCC---ceEEEEeCCcccEEEE
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKLWNGTTG---KFVAVFRGHVGPVYQI 408 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g----~~lasgs~Dg~i~lwd~~~~---~~~~~~~~h~~~v~~~ 408 (500)
..+...+.++++.++. ..+++++.||.|++||+... +.+..+.+|.......
T Consensus 209 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (368)
T 3mmy_A 209 ---------------------SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNT 267 (368)
T ss_dssp ---------------------CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----
T ss_pred ---------------------ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccc
Confidence 0011123333333333 23999999999999999887 5677788887621100
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEE
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 488 (500)
.. ......+..++|+|++++|++|+.||.|++||+++++.+..+.+|...|.+++|+|+|++|++
T Consensus 268 ~~---------------~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 332 (368)
T 3mmy_A 268 SA---------------PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAY 332 (368)
T ss_dssp CC---------------CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEE
T ss_pred cc---------------cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEE
Confidence 00 000011233378999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEe
Q 010816 489 GGKDRVLKLW 498 (500)
Q Consensus 489 ~~~D~~v~iW 498 (500)
++.|+..+.|
T Consensus 333 ~s~d~~~~~~ 342 (368)
T 3mmy_A 333 ASSYDWSKGH 342 (368)
T ss_dssp EECCCSTTCG
T ss_pred Eecccccccc
Confidence 9999855544
No 69
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=9.7e-37 Score=295.01 Aligned_cols=258 Identities=26% Similarity=0.455 Sum_probs=211.9
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
..|.+++|+|++++||+|+.|++|+|||+.+++.+..+.+|...|.+++|+|++++|++|+.|++|++||+++++....
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~- 202 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT- 202 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEE-
Confidence 3599999999999999999999999999999998889999999999999999999999999999999999998865432
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-------cCccccEEEEEeCCCC-eEEEEeCC
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-------SGHTLAVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-------~~h~~~v~~~~~~~~~-~l~t~~~d 260 (500)
..+...+..+.|.|. ++..+++|+.|+.|++||++++.++..+ .+|...|.+++|++++ .|++|+.|
T Consensus 203 -~~~~~~v~~~~~~~~----~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d 277 (393)
T 1erj_A 203 -LSIEDGVTTVAVSPG----DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD 277 (393)
T ss_dssp -EECSSCEEEEEECST----TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT
T ss_pred -EEcCCCcEEEEEECC----CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC
Confidence 234567888888762 4568999999999999999998887766 5799999999999987 68899999
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
++|++||++++........
T Consensus 278 ~~v~~wd~~~~~~~~~~~~------------------------------------------------------------- 296 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKT------------------------------------------------------------- 296 (393)
T ss_dssp SEEEEEEC------------------------------------------------------------------------
T ss_pred CEEEEEECCCCCCcccccC-------------------------------------------------------------
Confidence 9999999876432111000
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
.........+.+|...|.+++|+|++.+|++|+.|+.|++||..+++.+..+.+|.+.|.++.+...
T Consensus 297 ------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~------- 363 (393)
T 1erj_A 297 ------PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG------- 363 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS-------
T ss_pred ------CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC-------
Confidence 0000112345688999999999999999999999999999999999999999999999998865210
Q ss_pred CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
..|+|++.+|++|+.|++|+||+++.
T Consensus 364 --------------~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 --------------SSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp --------------CTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred --------------cCcCCCCCEEEEECCCCcEEECcccc
Confidence 02467899999999999999999754
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=6.1e-38 Score=301.98 Aligned_cols=261 Identities=22% Similarity=0.379 Sum_probs=218.4
Q ss_pred EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCc
Q 010816 132 VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR 211 (500)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 211 (500)
+..|+..+..+...+.+|.+.|.+++|+|++++|+||+.|++|++||+.+++... .+..|...|.+++|+| ++.
T Consensus 48 ~~~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~-~~~~h~~~v~~~~~s~-----~g~ 121 (380)
T 3iz6_a 48 AVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH-AIKLHCPWVMECAFAP-----NGQ 121 (380)
T ss_dssp CCCCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE-EEECCCTTCCCCEECT-----TSS
T ss_pred ccccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce-EEecCCCCEEEEEECC-----CCC
Confidence 3345555556667889999999999999999999999999999999998886543 4678999999999877 457
Q ss_pred eEEEEeCCCcEEEEECCCCe-------EEEEecCccccEEEEEeCCC--CeEEEEeCCCeEEEEeCCCCeeEEEeecCCc
Q 010816 212 RFVSASKDGDARIWDVSLRK-------CVICLSGHTLAVTCVKWGGD--GVIYTGSQDCTIKVWETTQGKLIRELKGHGH 282 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~~-------~~~~~~~h~~~v~~~~~~~~--~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~ 282 (500)
.+++|+.|+.+++||+.... ....+.+|...|.++.|.++ ..|++|+.|++|++||+.+++.+..+..
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~--- 198 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS--- 198 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC---
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec---
Confidence 89999999999999986532 33457799999999999875 3699999999999999988765433210
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~ 362 (500)
....+|...
T Consensus 199 -----------------------------------------------------------------------~~~~~h~~~ 207 (380)
T 3iz6_a 199 -----------------------------------------------------------------------EFPSGHTAD 207 (380)
T ss_dssp -----------------------------------------------------------------------CSSSSCCSC
T ss_pred -----------------------------------------------------------------------ccCCCCccC
Confidence 011367788
Q ss_pred EEEEEECC-CCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 363 VNHVYFSP-DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 363 v~~l~~sp-~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
|.+++|+| ++++|++|+.|+.|++||++ .++.+..+.+|.+.|.++ +|+|+
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v---------------------------~~~p~ 260 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSV---------------------------KFFPD 260 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEE---------------------------EECTT
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEE---------------------------EEecC
Confidence 99999987 88999999999999999998 567888999999998877 56999
Q ss_pred CCEEEEEECCCcEEEEECCCccccccccCcc-------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA-------DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~-------~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+++|++|+.|++|++||+++++.+..+..+. ..|.+++|+|+|++|++|+.|+.|++|+
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd 326 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWD 326 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEE
Confidence 9999999999999999999988766554432 3489999999999999999999999997
No 71
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-37 Score=288.86 Aligned_cols=244 Identities=25% Similarity=0.368 Sum_probs=194.9
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-------CceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-------QTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
+|.+.|.+++|+|++++||+|+.|++|+|||+.. ..++..+.+|...|.+++|+|++++|++|+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 4999999999999999999999999999999853 245567889999999999999999999999999999999
Q ss_pred CCCC-Cc--ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCC--
Q 010816 179 PQTG-KP--SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD-- 251 (500)
Q Consensus 179 ~~~~-~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~-- 251 (500)
+... .. ....+.+|...|.++.|+| ++..|++|+.|++|++||...+ +++..+.+|...|.++.|+++
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p-----~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 210 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHP-----SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG 210 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECS-----SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECC-----CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC
Confidence 9533 21 1234678999999999987 3468999999999999998766 678889999999999999987
Q ss_pred C-eEEEEeCCCeEEEEeCCCC--------eeEEEeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 252 G-VIYTGSQDCTIKVWETTQG--------KLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 252 ~-~l~t~~~dg~i~lwd~~~~--------~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+ .|++|+.|++|++||+..+ .....+.. |...|.++++++.
T Consensus 211 ~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------------------------- 261 (330)
T 2hes_X 211 VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----------------------------- 261 (330)
T ss_dssp SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT-----------------------------
T ss_pred eeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC-----------------------------
Confidence 4 5899999999999998654 33444444 7788888887642
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCC--CCceeeecccC-cEEEEEECC--CCCEEEEEeCCCcEEEEeCCC
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQ-LVNHVYFSP--DGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~--~~~~~~~~h~~-~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~~ 391 (500)
..+++++.|++|++||..... .......+|.. .|++++|+| ++++||+|+.||.|++||+++
T Consensus 262 --------~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 262 --------GLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp --------SCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred --------CEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 358999999999999975432 11123357877 899999999 789999999999999999864
No 72
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.9e-36 Score=293.72 Aligned_cols=290 Identities=19% Similarity=0.274 Sum_probs=235.6
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.+| ..+....|+|++++||+|+.|+.|+|||+.++.....+.+|...|.+++|+|++++|++|+.|+.|++||+.
T Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~ 169 (420)
T 3vl1_A 91 SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK 169 (420)
T ss_dssp TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 3445556 455566789999999999999999999999988888788999999999999999999999999999999999
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC---ccccEEEEE----------
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG---HTLAVTCVK---------- 247 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~---------- 247 (500)
+++... .+.+|...|.++.|+| ++..+++++.|+.|++||+++++++..+.. |...|.++.
T Consensus 170 ~~~~~~-~~~~h~~~v~~~~~~~-----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 243 (420)
T 3vl1_A 170 DGSNPR-TLIGHRATVTDIAIID-----RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLH 243 (420)
T ss_dssp TCCCCE-EEECCSSCEEEEEEET-----TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCG
T ss_pred CCcCce-EEcCCCCcEEEEEEcC-----CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceee
Confidence 887654 4678999999999987 456899999999999999999999888874 344555554
Q ss_pred -----------eCCCC-eEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 248 -----------WGGDG-VIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 248 -----------~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
|++++ .|++|+.||.|++||+++++....+. .|...|.+++++++.
T Consensus 244 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------- 302 (420)
T 3vl1_A 244 EISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN--------------------- 302 (420)
T ss_dssp GGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC---------------------
T ss_pred ecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCC---------------------
Confidence 45666 68899999999999999988776664 578889999988752
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 315 KAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
...+++|+.|+.|++||+.....+...+.+ |...|.++.+ +++++|++++.|+.|++||+...+
T Consensus 303 --------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 303 --------------ANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp --------------TTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred --------------CCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 227999999999999999876665566665 6778888855 578899999999999999987642
Q ss_pred e---------EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC---EEEEEECCCcEEEEECCC
Q 010816 394 F---------VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR---LLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 394 ~---------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~l~s~s~d~~v~iwd~~~ 460 (500)
. ...+.+|.+.+ ..++|+|++. .+++++.+|.+.+|+++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v---------------------------~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAV---------------------------SQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCC---------------------------CEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccceeccCccEEccCCcce---------------------------EEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 2 11223333333 3447899999 788888899999999864
No 73
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-37 Score=308.53 Aligned_cols=284 Identities=12% Similarity=0.064 Sum_probs=219.0
Q ss_pred cccCCcccEEEEEEcCC------CCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCCCCEEEEEEcCCCCEE
Q 010816 103 TIAGHTEAVLSVAFSPD------GRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHL 165 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~------~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~l 165 (500)
++.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. +...+.+|...|.+++|+++ ..|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeE
Confidence 46788999999999997 5799999999999999997653 23467899999999999986 489
Q ss_pred EEEeCCCeEEEEeCCCCCcccccccCcccceEEEE--eeeeecCCCC-ceEEEEeCCCcEEEEECCCCeEEEEecCccc-
Q 010816 166 VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGIS--WEPVHLNAPC-RRFVSASKDGDARIWDVSLRKCVICLSGHTL- 241 (500)
Q Consensus 166 ~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~-~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~- 241 (500)
++|+.||+|++||++++......+.+|...|.+++ |.| ++ ..|++||.|++|+|||+++++++..+.+|..
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~-----~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD-----FEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT-----TSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC-----CCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 99999999999999887544445788999999994 443 33 5799999999999999998887766767653
Q ss_pred -cEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 242 -AVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 242 -~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
.|.+++|+|++ .+++++.|++|++||++++..+..+.+|...|.+++++|+.
T Consensus 356 ~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g-------------------------- 409 (524)
T 2j04_B 356 SNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH-------------------------- 409 (524)
T ss_dssp CSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSC--------------------------
T ss_pred CcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCC--------------------------
Confidence 47889999976 68889999999999999998888888999999999998862
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-----ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCc
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-----HQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGK 393 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-----h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~ 393 (500)
..+++|+.|++|++||+... ....... +...+.+++|+|+|+.+.. .| .+++|+.. ++.
T Consensus 410 ----------~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~--~~-~~~~~~~~~~g~ 474 (524)
T 2j04_B 410 ----------PMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDDKYRI--DS-SYEVYPLTVNDV 474 (524)
T ss_dssp ----------CBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSCEEEE--CC-CCCCCC------
T ss_pred ----------CeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCCeEEc--cC-CceecccccCCc
Confidence 45899999999999997542 1111111 1224789999999986532 22 34455443 567
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC---CEEEEEECCCcEEEEECCC
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l~s~s~d~~v~iwd~~~ 460 (500)
++..+.+|.++|.++ +|+|++ .++|+|+.||.||||+++.
T Consensus 475 ~~~~l~gh~~~V~~V---------------------------afsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 475 SKAKIDAHGINITCT---------------------------KWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp -------CCCSCCCE---------------------------EECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ceeeecCCCceEEEE---------------------------ECCCCCCccHHHHhhccCceEEEEEccc
Confidence 778889999888777 678985 4999999999999999754
No 74
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=294.72 Aligned_cols=291 Identities=13% Similarity=0.121 Sum_probs=227.0
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
-...|.+++|+|||+++||++.|++|+ |....+.+ .+|...|.+++|+|+| .++.+.+|+.+...
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--- 78 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC---
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCce---
Confidence 357899999999999999999999999 76655544 7999999999999998 46666666543222
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccc-----cEEEEEeCCCC-eEEEEeCC
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTL-----AVTCVKWGGDG-VIYTGSQD 260 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~-----~v~~~~~~~~~-~l~t~~~d 260 (500)
.....|...|.+++|+| ++.++++++.||.|++||... ++..+. |.. .|.+++|+||| .|++|+.|
T Consensus 79 ~~~~~~~~~V~~vawSP-----dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 79 LLNSQPVCYPRVCKPSP-----IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp SSTTSCSCCEEEEEECS-----SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred EeecCCCCcEEEEEECC-----CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 12225588899999998 557899999999999999544 666666 665 59999999998 58899999
Q ss_pred CeEEEEeCCCCee-------EEEe----ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 261 CTIKVWETTQGKL-------IREL----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 261 g~i~lwd~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
|+|++||+.++.. +..+ .+|..+|.+++++|+
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------------------------------------- 193 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------------------------------------- 193 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT-------------------------------------
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC-------------------------------------
Confidence 9999999998753 5666 567789999999875
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCC--ceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQP--KTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~--~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
. +++++.|+++++||+...... ...+ .+|...|.+++|+ |+.||+++ |++|++||+.+++......+|...++
T Consensus 194 g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~ 269 (588)
T 2j04_A 194 V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFH 269 (588)
T ss_dssp E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCC
T ss_pred c-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEE
Confidence 2 788999999999998665421 2335 4788999999999 68999987 69999999998887444448999888
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEE--cCCCCEEEEEECCCcEEEEECC------------------------C
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSW--SADSRLLLSGSKDSTLKVWDIR------------------------T 460 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~~~~~l~s~s~d~~v~iwd~~------------------------~ 460 (500)
.+. + +|++..|++++.||+ ++|... .
T Consensus 270 ~va---------------------------~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 270 IIP---------------------------LNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp EEE---------------------------ETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTT
T ss_pred EEE---------------------------eeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCC
Confidence 874 4 566666666666666 666542 2
Q ss_pred ccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 461 QKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 461 ~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
+. ...+.+ ...|++++|||||+.+|+++.
T Consensus 322 ~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 322 NE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred Cc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 22 223333 456999999999999999875
No 75
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.6e-36 Score=316.95 Aligned_cols=288 Identities=23% Similarity=0.363 Sum_probs=253.1
Q ss_pred eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 143 MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 143 ~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
...+.+|.+.|.+++|+|++++|++++.||.|++||+.+++... .+.+|...|.++.|+| ++..+++++.||.|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~-~~~~~~~~v~~~~~s~-----~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR-SIQVTETPVRAGKFIA-----RKNWIIVGSDDFRI 79 (814)
T ss_dssp EEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE-EEECCSSCEEEEEEEG-----GGTEEEEEETTSEE
T ss_pred ceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE-EEecCCCcEEEEEEeC-----CCCEEEEEeCCCeE
Confidence 45678999999999999999999999999999999999886544 4668999999999998 34689999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
++||+.+++.+..+.+|...|++++|++++ .|++++.||.|++||+.++ .....+..|...|.+++++|..
T Consensus 80 ~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~------- 152 (814)
T 3mkq_A 80 RVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD------- 152 (814)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTE-------
T ss_pred EEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCC-------
Confidence 999999999999999999999999999987 6889999999999999887 6677888999999999998721
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEE
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASA 378 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasg 378 (500)
+..+++++.|++|++||+............+...+.+++|+| ++.+|++|
T Consensus 153 ----------------------------~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ 204 (814)
T 3mkq_A 153 ----------------------------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (814)
T ss_dssp ----------------------------EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEE
T ss_pred ----------------------------CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEE
Confidence 346899999999999998765554444445558899999999 99999999
Q ss_pred eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 379 SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 379 s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
+.||.|++||+.+++.+..+.+|.+.+.++ +|+|++.+|++++.||.|++||+
T Consensus 205 ~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~---------------------------~~~~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 205 SDDLTIKIWDYQTKSCVATLEGHMSNVSFA---------------------------VFHPTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp CTTSEEEEEETTTTEEEEEEECCSSCEEEE---------------------------EECSSSSEEEEEETTSCEEEEET
T ss_pred eCCCEEEEEECCCCcEEEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEeCCCeEEEEEC
Confidence 999999999999999999999999988877 57999999999999999999999
Q ss_pred CCccccccccCcccCEEEEEEcCCCCE--EEEEeCCCcEEEec
Q 010816 459 RTQKLKQDLPGHADEVFAVDWSPDGEK--VASGGKDRVLKLWM 499 (500)
Q Consensus 459 ~~~~~~~~~~~h~~~V~~l~~s~dg~~--l~s~~~D~~v~iW~ 499 (500)
.+++....+..|...+++++|+|+|+. +++++ |+.+.+|+
T Consensus 258 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 258 STYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp TTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred CCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 999999999999999999999999874 55555 55566664
No 76
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6e-36 Score=290.43 Aligned_cols=283 Identities=25% Similarity=0.465 Sum_probs=238.2
Q ss_pred EecCCCCC--EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcE
Q 010816 145 KCTGHKNW--VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDA 222 (500)
Q Consensus 145 ~~~~h~~~--v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v 222 (500)
...+|... +.+++|++ ..+++++.|+.|++||+.+++........|...|.+++|+| ++..+++|+.||.|
T Consensus 86 ~~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-----~~~~l~~~~~dg~i 158 (401)
T 4aez_A 86 DAPGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSH-----DGSFLSVGLGNGLV 158 (401)
T ss_dssp ECTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-----TSSEEEEEETTSCE
T ss_pred eCCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-----CCCEEEEECCCCeE
Confidence 34456544 55577765 56888999999999999998866544455889999999987 45689999999999
Q ss_pred EEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 223 RIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 223 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
++||+.+++.+..+.+|...|.++.|++ ..+++|+.||.|++||++ .+..+..+..|...|.+++++++
T Consensus 159 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 228 (401)
T 4aez_A 159 DIYDVESQTKLRTMAGHQARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD--------- 228 (401)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT---------
T ss_pred EEEECcCCeEEEEecCCCCceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC---------
Confidence 9999999999999999999999999964 589999999999999998 55677888899999999999875
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEe-
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASAS- 379 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs- 379 (500)
+..+++|+.|+.|++||+... .....+.+|...|.+++|+|++ .++++|+
T Consensus 229 ---------------------------~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~g 280 (401)
T 4aez_A 229 ---------------------------GLQLASGGNDNVVQIWDARSS-IPKFTKTNHNAAVKAVAWCPWQSNLLATGGG 280 (401)
T ss_dssp ---------------------------SSEEEEEETTSCEEEEETTCS-SEEEEECCCSSCCCEEEECTTSTTEEEEECC
T ss_pred ---------------------------CCEEEEEeCCCeEEEccCCCC-CccEEecCCcceEEEEEECCCCCCEEEEecC
Confidence 357999999999999998753 3455677899999999999976 5667765
Q ss_pred -CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEE
Q 010816 380 -FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVW 456 (500)
Q Consensus 380 -~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iw 456 (500)
.|+.|++||+.+++.+..+. |...+.++ +|+|++++|++++ .||.|++|
T Consensus 281 s~d~~i~i~d~~~~~~~~~~~-~~~~v~~~---------------------------~~s~~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 281 TMDKQIHFWNAATGARVNTVD-AGSQVTSL---------------------------IWSPHSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp TTTCEEEEEETTTCCEEEEEE-CSSCEEEE---------------------------EECSSSSEEEEEECTTTCEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEEe-CCCcEEEE---------------------------EECCCCCeEEEEeecCCCcEEEE
Confidence 79999999999999888776 44556555 6799999999954 89999999
Q ss_pred ECCCcccc--ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 457 DIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 457 d~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
|+.+++.. ..+.+|...|.+++|+|+|++|++++.|+.|++|+.
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99886544 346789999999999999999999999999999973
No 77
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.1e-36 Score=282.78 Aligned_cols=253 Identities=21% Similarity=0.366 Sum_probs=206.6
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.+|...|.+++|+|++.+|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+.
T Consensus 69 ~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~ 148 (343)
T 2xzm_R 69 HKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL 148 (343)
T ss_dssp EEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS
T ss_pred cchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcc-cccccCcccceEEEEeeeeecC-----CCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-e
Q 010816 181 TGKPS-GNPLSGHKKWITGISWEPVHLN-----APCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-V 253 (500)
Q Consensus 181 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~ 253 (500)
..... .....+|...|.++.|.|.... .....+++++.|+.|++|| ...+....+.+|...|.+++|++++ +
T Consensus 149 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~ 227 (343)
T 2xzm_R 149 GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKY 227 (343)
T ss_dssp SCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSE
T ss_pred CCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCE
Confidence 43211 1123478899999999885321 1235799999999999999 4567777889999999999999987 6
Q ss_pred EEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 254 IYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
|++|+.|+.|++||+.. ......+ .+...|.+++++|+. .+
T Consensus 228 l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~-------------------------------------~~ 269 (343)
T 2xzm_R 228 IATGGKDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKL-------------------------------------QW 269 (343)
T ss_dssp EEEEETTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSS-------------------------------------CE
T ss_pred EEEEcCCCeEEEEECCCCcccceee-cCCCcEEEEEECCCC-------------------------------------CE
Confidence 88999999999999954 3333433 245568889888752 24
Q ss_pred EEeeCCCeEEEEcCCCCCCCc-eee-----------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 333 VSGSDDFTMFLWEPAVSKQPK-TRM-----------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~~~~~~~-~~~-----------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
++++.|+.+++||+....... ..+ .+|...|.+++|+|+|++|++|+.||.|++|+++++
T Consensus 270 la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 270 VAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp EEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred EEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 456678889999986543221 112 268889999999999999999999999999998654
No 78
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.8e-35 Score=288.94 Aligned_cols=288 Identities=31% Similarity=0.536 Sum_probs=248.6
Q ss_pred EeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe
Q 010816 92 FRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS 169 (500)
Q Consensus 92 ~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~ 169 (500)
.+++.. ..+...+.+|.+.|.+++|+ +++|++|+.||+|++||+.+++.+..+.+|...|.++.|+ ++.|++|+
T Consensus 141 i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s 216 (445)
T 2ovr_B 141 LKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGS 216 (445)
T ss_dssp EEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEe
Confidence 344443 34566788999999999997 6799999999999999999999999999999999999995 57899999
Q ss_pred CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (500)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~ 249 (500)
.|++|++||+.+++... .+.+|...+.++.|. +..+++|+.||.|++||+++++++..+.+|...|.++.|
T Consensus 217 ~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~~-------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~- 287 (445)
T 2ovr_B 217 RDATLRVWDIETGQCLH-VLMGHVAAVRCVQYD-------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF- 287 (445)
T ss_dssp TTSEEEEEESSSCCEEE-EEECCSSCEEEEEEC-------SSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-
T ss_pred CCCEEEEEECCCCcEEE-EEcCCcccEEEEEEC-------CCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-
Confidence 99999999999887653 467899999999872 357999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 250 GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 250 ~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
....+++|+.|+.|++||+++++.+..+..|...+.++.+.+
T Consensus 288 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~-------------------------------------- 329 (445)
T 2ovr_B 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD-------------------------------------- 329 (445)
T ss_dssp CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--------------------------------------
T ss_pred CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeC--------------------------------------
Confidence 345799999999999999999999999998888888776542
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeec---ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-----eCC
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTG---HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF-----RGH 401 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~---h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-----~~h 401 (500)
..+++|+.|+.|++||+.... ....+.+ |...|.+++|+ +++|++|+.||.|++||+.+++.+..+ .+|
T Consensus 330 ~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 406 (445)
T 2ovr_B 330 NILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 406 (445)
T ss_dssp TEEEEEETTSCEEEEETTTCC-EEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGG
T ss_pred CEEEEEeCCCeEEEEECCCCc-EEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCC
Confidence 468999999999999986543 3344444 88899999996 689999999999999999999998877 356
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCc----EEEEECCC
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDST----LKVWDIRT 460 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~----v~iwd~~~ 460 (500)
.+.+.++ +|+|++.++++|+.||+ |.+||...
T Consensus 407 ~~~v~~~---------------------------~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 407 GGVVWRI---------------------------RASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCEEEEE---------------------------EECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CceEEEE---------------------------EecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 7777776 56999999999999998 99999864
No 79
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1.9e-36 Score=287.58 Aligned_cols=291 Identities=20% Similarity=0.337 Sum_probs=210.3
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc----eeEEecCCCCCEEEEEEcC--CCCEEEEEeCCCeEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT----PMFKCTGHKNWVLCIAWSA--DGKHLVSGSKAGELQ 175 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~s~--~~~~l~s~~~d~~i~ 175 (500)
..+.||.+.|++++|+|++++||+|+.||.|+|||+.++. ....+.+|...|.+++|+| ++++|++|+.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 3567999999999999999999999999999999998763 4556789999999999999 699999999999999
Q ss_pred EEeCCCCCc--------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----------
Q 010816 176 CWDPQTGKP--------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL----------- 236 (500)
Q Consensus 176 ~wd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~----------- 236 (500)
+||+.+++. ....+.+|...|.++.|.|.. .+..+++++.|+.|++||+++++.+..+
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~ 161 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH---LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSI 161 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSC
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCC---CCcEEEEecCCCcEEEecCCChHHhcccccccccccccc
Confidence 999987642 123466899999999998741 1468999999999999999877643322
Q ss_pred --cCccccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 237 --SGHTLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 237 --~~h~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
.+|...+.++.|+++ ..+++++.|+.+.+|+...++..
T Consensus 162 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~------------------------------------ 205 (351)
T 3f3f_A 162 PPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLH------------------------------------ 205 (351)
T ss_dssp CCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEE------------------------------------
T ss_pred ccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCcee------------------------------------
Confidence 156677888888774 35777777777766655433211
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC----CEEEEEeCCCcEEE
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG----QWVASASFDKSIKL 386 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g----~~lasgs~Dg~i~l 386 (500)
....+.+|...|.+++|+|++ ++|++|+.||.|++
T Consensus 206 -----------------------------------------~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i 244 (351)
T 3f3f_A 206 -----------------------------------------VAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI 244 (351)
T ss_dssp -----------------------------------------EEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred -----------------------------------------eeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence 012344678889999999998 89999999999999
Q ss_pred EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE----EEECCCcEEEEECCCcc
Q 010816 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL----SGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~----s~s~d~~v~iwd~~~~~ 462 (500)
||+.++........+....... ..++....++ .+.....+.+|+....+
T Consensus 245 wd~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (351)
T 3f3f_A 245 FKITEKLSPLASEESLTNSNMF---------------------------DNSADVDMDAQGRSDSNTEEKAELQSNLQVE 297 (351)
T ss_dssp EEEEECC------------------------------------------------------------------CCSEEEE
T ss_pred EeCCCCcCccccCCcccceecc---------------------------CCCcccccccccccccccceeeeeccccccc
Confidence 9998765433222211111110 1122222222 33345566778777778
Q ss_pred ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 463 LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 463 ~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+..+.+|.+.|++++|+|++++|++++.||.|++|+
T Consensus 298 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 298 LLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp EEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred EEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 8888999999999999999999999999999999997
No 80
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.2e-37 Score=286.06 Aligned_cols=247 Identities=25% Similarity=0.327 Sum_probs=202.5
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCC---CCeEEEEeCCC
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGG---DGVIYTGSQDC 261 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~---~~~l~t~~~dg 261 (500)
..+.+|...|.+++|+| ++.++++|+.|++|++||++++. ++..+.+|...|.+++|++ ...|++|+.|+
T Consensus 7 ~~~~~H~~~V~~v~~s~-----~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDY-----YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp -------CCEEEEEECG-----GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred eecccccCeEEEeeEcC-----CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 34678999999999987 45689999999999999998764 4677899999999999975 35799999999
Q ss_pred eEEEEeCCCCe--eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 262 TIKVWETTQGK--LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 262 ~i~lwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
+|++||+++++ ....+.+|...|.+++++|+. .+..+++|+.|+
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~----------------------------------~g~~lasgs~D~ 127 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHD----------------------------------YGLILACGSSDG 127 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTT----------------------------------TCSCEEEECSSS
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCC----------------------------------CCcEEEEEcCCC
Confidence 99999998874 566778899999999998741 134689999999
Q ss_pred eEEEEcCCCCCCC--ceeeecccCcEEEEEECCC-----------------CCEEEEEeCCCcEEEEeCCCC---ceEEE
Q 010816 340 TMFLWEPAVSKQP--KTRMTGHQQLVNHVYFSPD-----------------GQWVASASFDKSIKLWNGTTG---KFVAV 397 (500)
Q Consensus 340 ~v~~wd~~~~~~~--~~~~~~h~~~v~~l~~sp~-----------------g~~lasgs~Dg~i~lwd~~~~---~~~~~ 397 (500)
+|++||....... ...+.+|...|.+++|+|+ +++||+|+.|+.|++||++.+ +.+..
T Consensus 128 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~ 207 (316)
T 3bg1_A 128 AISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207 (316)
T ss_dssp CEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC
T ss_pred CEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeee
Confidence 9999998654221 3445689999999999997 478999999999999999765 46678
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC----CEEEEEECCCcEEEEECCCcc----ccccccC
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS----RLLLSGSKDSTLKVWDIRTQK----LKQDLPG 469 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~l~s~s~d~~v~iwd~~~~~----~~~~~~~ 469 (500)
+++|..+|.++ +|+|++ .+|++|+.|++|+|||+.+.. ....+.+
T Consensus 208 l~~h~~~V~~v---------------------------~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 208 LEAHSDWVRDV---------------------------AWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp CBCCSSCEEEE---------------------------ECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred cccCCCceEEE---------------------------EecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 89999999888 457876 899999999999999987631 1234567
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|.+.|++++|+|+|++|++++.|++|+||+
T Consensus 261 ~~~~v~~v~~sp~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 261 FNDVVWHVSWSITANILAVSGGDNKVTLWK 290 (316)
T ss_dssp CSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence 889999999999999999999999999996
No 81
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-34 Score=270.23 Aligned_cols=252 Identities=29% Similarity=0.538 Sum_probs=215.4
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
.+...+.+|...|.+++|+|++++|++|+.|+.|++||+.+++++..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 56 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd 135 (312)
T 4ery_A 56 KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135 (312)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEE
T ss_pred ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCC-eEEE
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDG-VIYT 256 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~l~t 256 (500)
+++++... .+..|...|.++.|+| ++..+++++.|+.|++||+++++++..+. .+...+.+++|++++ .+++
T Consensus 136 ~~~~~~~~-~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 209 (312)
T 4ery_A 136 VKTGKCLK-TLPAHSDPVSAVHFNR-----DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA 209 (312)
T ss_dssp TTTCCEEE-EECCCSSCEEEEEECT-----TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE
T ss_pred CCCCEEEE-EecCCCCcEEEEEEcC-----CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEE
Confidence 99887543 4678889999999976 45689999999999999999988877654 566789999999986 6889
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
++.|+.|++||+++++.+..+..|....
T Consensus 210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------------------------------------------- 237 (312)
T 4ery_A 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEK---------------------------------------------------- 237 (312)
T ss_dssp EETTTEEEEEETTTTEEEEEECSSCCSS----------------------------------------------------
T ss_pred EcCCCeEEEEECCCCcEEEEEEecCCce----------------------------------------------------
Confidence 9999999999999887766554332100
Q ss_pred CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCF 416 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 416 (500)
..+......+++.+|++|+.||.|++||+.+++.+..+.+|...+.++
T Consensus 238 ------------------------~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~-------- 285 (312)
T 4ery_A 238 ------------------------YCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST-------- 285 (312)
T ss_dssp ------------------------SCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEE--------
T ss_pred ------------------------EEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEE--------
Confidence 001112234678899999999999999999999999999999998887
Q ss_pred cCCCCceeeeeccccceeeEEcCCCCEEEEEE--CCCcEEEEECC
Q 010816 417 RYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS--KDSTLKVWDIR 459 (500)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s--~d~~v~iwd~~ 459 (500)
+|+|++.+|++++ .|++|++|+..
T Consensus 286 -------------------~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 286 -------------------ACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp -------------------EECSSSSEEEEEECTTTCCEEEEECC
T ss_pred -------------------eecCcCCceEEEEccCCccEEEecCC
Confidence 5699999999997 69999999853
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=6.6e-35 Score=288.91 Aligned_cols=269 Identities=26% Similarity=0.428 Sum_probs=229.0
Q ss_pred EeEEec--ccccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEc--CCCCEEEE
Q 010816 92 FRIRPV--NRCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWS--ADGKHLVS 167 (500)
Q Consensus 92 ~~~~~~--~~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s--~~~~~l~s 167 (500)
.+++.. ..+..++.+|.+.|.+++|+|++ +|++|+.||+|++||+.++.++..+.+|...|.+++|+ +++++|++
T Consensus 144 i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s 222 (464)
T 3v7d_B 144 IRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVT 222 (464)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEE
T ss_pred EEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEE
Confidence 344443 34556788999999999999998 99999999999999999999999999999999999998 57889999
Q ss_pred EeCCCeEEEEeCCCCCccc----------------------ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816 168 GSKAGELQCWDPQTGKPSG----------------------NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~----------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw 225 (500)
|+.|++|++||+.++.... ..+.+|...+.++.. ++..+++|+.|+.|++|
T Consensus 223 ~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 223 GSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-------HGNIVVSGSYDNTLIVW 295 (464)
T ss_dssp EETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-------ETTEEEEEETTSCEEEE
T ss_pred EcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-------CCCEEEEEeCCCeEEEE
Confidence 9999999999998765321 234567777777643 24689999999999999
Q ss_pred ECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCC
Q 010816 226 DVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTG 304 (500)
Q Consensus 226 d~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 304 (500)
|+++++++..+.+|...|.++.|++++ .+++|+.||.|++||+.+++.+..+.+|...|.++.+++
T Consensus 296 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------- 362 (464)
T 3v7d_B 296 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD------------- 362 (464)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS-------------
T ss_pred ECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC-------------
Confidence 999999999999999999999999876 689999999999999999999999999999999988753
Q ss_pred CCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816 305 KQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSI 384 (500)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i 384 (500)
..+++++.|++|++||+..... .....|...+..++|+|++++|++|+ ||.|
T Consensus 363 -------------------------~~l~s~s~dg~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i 414 (464)
T 3v7d_B 363 -------------------------KFLVSAAADGSIRGWDANDYSR--KFSYHHTNLSAITTFYVSDNILVSGS-ENQF 414 (464)
T ss_dssp -------------------------SEEEEEETTSEEEEEETTTCCE--EEEEECTTCCCEEEEEECSSEEEEEE-TTEE
T ss_pred -------------------------CEEEEEeCCCcEEEEECCCCce--eeeecCCCCccEEEEEeCCCEEEEec-CCeE
Confidence 3699999999999999875432 22234666788889999999999998 8999
Q ss_pred EEEeCCCCceEEE-EeCCcccEEEEE
Q 010816 385 KLWNGTTGKFVAV-FRGHVGPVYQIR 409 (500)
Q Consensus 385 ~lwd~~~~~~~~~-~~~h~~~v~~~~ 409 (500)
++||+.+++++.. +.+|.+.|.++.
T Consensus 415 ~iwd~~~g~~~~~~~~~~~~~v~~v~ 440 (464)
T 3v7d_B 415 NIYNLRSGKLVHANILKDADQIWSVN 440 (464)
T ss_dssp EEEETTTCCEEESCTTTTCSEEEEEE
T ss_pred EEEECCCCcEEehhhccCCCcEEEEE
Confidence 9999999999875 567888887774
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=284.32 Aligned_cols=255 Identities=21% Similarity=0.413 Sum_probs=204.6
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQ 175 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~ 175 (500)
+...+.||.+.|.+++|+|++++||+|+.||.|+|||+. +...+..+.+|...|.+++|+++ +++|++|+.||.|+
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~ 82 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence 345678999999999999999999999999999999997 45666778899999999999987 89999999999999
Q ss_pred EEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEecCccccEEEEEeCCC-
Q 010816 176 CWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLSGHTLAVTCVKWGGD- 251 (500)
Q Consensus 176 ~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~~h~~~v~~~~~~~~- 251 (500)
+||+.+++. ....+.+|...|.++.|+|.. .+..+++++.|+.|++||++.. .....+.+|...|.++.|++.
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE---YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCC---CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 999988752 223466789999999998741 1468999999999999999877 345567789999999999983
Q ss_pred -------------CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 252 -------------GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 252 -------------~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
..+++++.|+.|++||++++....
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~------------------------------------------- 196 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY------------------------------------------- 196 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEE-------------------------------------------
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcce-------------------------------------------
Confidence 356666677777777654432110
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCC---CCEEEEEeCCCcEEEEeCCCCc--
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPD---GQWVASASFDKSIKLWNGTTGK-- 393 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~---g~~lasgs~Dg~i~lwd~~~~~-- 393 (500)
.....+.+|...|.+++|+|+ +.+|++++.||.|++||+.++.
T Consensus 197 --------------------------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 197 --------------------------------VLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp --------------------------------EEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred --------------------------------eeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc
Confidence 011234578889999999999 8999999999999999998864
Q ss_pred -eEEEEe--CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 394 -FVAVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 394 -~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
....+. .|...+.++ +|+|++++|++++.||.|++|++.
T Consensus 245 ~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRA---------------------------SWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp CEEEESSSSCCSSCEEEE---------------------------EECSSSCCEEEEESSSSEEEEEEE
T ss_pred ceeeeeccccCCCcEEEE---------------------------EEcCCCCEEEEecCCCcEEEEeCC
Confidence 222222 256666555 679999999999999999999986
No 84
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=1.1e-34 Score=276.48 Aligned_cols=287 Identities=16% Similarity=0.168 Sum_probs=205.7
Q ss_pred EEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceE
Q 010816 134 LWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF 213 (500)
Q Consensus 134 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 213 (500)
||++.+..++.....|...|.+++|+|||++|++|+.|+ +++||..+++.... .+...+..+.+.+. ....+
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~---~~~~~~~~~~~~~~----~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS---QEMRHLSKVRMLHR----TNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE---EECSCCCEEEECTT----SSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee---eecCCeEEEEEcCC----CCEEE
Confidence 566667777777788999999999999999999998775 78999887654321 11123444544431 12234
Q ss_pred EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCC-eeEEEeecCCceEEEEEecCc
Q 010816 214 VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQG-KLIRELKGHGHWVNSLALSTE 292 (500)
Q Consensus 214 ~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~-~~~~~~~~~~~~v~~~~~~~~ 292 (500)
++++.|++|++||..+++++..+. |...|.++.++++..++ ..|+.|++||+.++ +.+..+.. +...+++++
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~--~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~- 147 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVV--SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN- 147 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEE--EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-
T ss_pred EEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEE--EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-
Confidence 678889999999999999988876 56789999999875443 34789999999987 55554443 222222222
Q ss_pred ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE--eeCCCeEEEEcCCCCC--------------CC-cee
Q 010816 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS--GSDDFTMFLWEPAVSK--------------QP-KTR 355 (500)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~s~d~~v~~wd~~~~~--------------~~-~~~ 355 (500)
..++. |+.||.|++||+.... .+ ...
T Consensus 148 -------------------------------------~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~ 190 (355)
T 3vu4_A 148 -------------------------------------GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVL 190 (355)
T ss_dssp -------------------------------------TEEEEEESSCTTCEEEEECCC------------------CCEE
T ss_pred -------------------------------------cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEE
Confidence 13443 7899999999987543 12 567
Q ss_pred eecccCcEEEEEECCCCCEEEEEeCCCc-EEEEeCCCCceEEEEe-C-CcccEEEEEeeeeeeecCCCCceeeeeccccc
Q 010816 356 MTGHQQLVNHVYFSPDGQWVASASFDKS-IKLWNGTTGKFVAVFR-G-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCM 432 (500)
Q Consensus 356 ~~~h~~~v~~l~~sp~g~~lasgs~Dg~-i~lwd~~~~~~~~~~~-~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (500)
+.+|...|++++|+|+|++||+|+.|++ |++||+.+++++..++ + |.++|.++
T Consensus 191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~------------------------ 246 (355)
T 3vu4_A 191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM------------------------ 246 (355)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEE------------------------
T ss_pred EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEE------------------------
Confidence 8899999999999999999999999998 9999999999999998 6 99999888
Q ss_pred eeeEEcCCCCEEEEEECCCcEEEEECCCccccc--ccc---------------------CcccCEEEEEEcCCCCEEEEE
Q 010816 433 SLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ--DLP---------------------GHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 433 ~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~--~~~---------------------~h~~~V~~l~~s~dg~~l~s~ 489 (500)
+|+|+|++|++++.|++|++||++...... .+. ++......++|++||+.|+++
T Consensus 247 ---~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 247 ---KWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp ---EECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred ---EECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 579999999999999999999997643211 111 111223668999999999999
Q ss_pred eCCCcEEEec
Q 010816 490 GKDRVLKLWM 499 (500)
Q Consensus 490 ~~D~~v~iW~ 499 (500)
+.||.+++|+
T Consensus 324 ~~dg~~~~~~ 333 (355)
T 3vu4_A 324 PHTRMIETFK 333 (355)
T ss_dssp TTTTEEEEEE
T ss_pred eCCCeEEEEE
Confidence 9999999996
No 85
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.4e-34 Score=279.00 Aligned_cols=276 Identities=23% Similarity=0.396 Sum_probs=218.7
Q ss_pred cceEeEEecc--ccccc--ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE
Q 010816 89 QAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164 (500)
Q Consensus 89 ~~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 164 (500)
+...++|... .+... +.+|.+.|++|+|+|+|++||+|+.||+|+|||+.+++++..+.+|...+.+++|+ +.+
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~ 201 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYI 201 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCE
Confidence 3455666543 33333 45788999999999999999999999999999999999999999999999999884 679
Q ss_pred EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe----EEEEecCcc
Q 010816 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK----CVICLSGHT 240 (500)
Q Consensus 165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h~ 240 (500)
|++|+.|+.+++||..........+.+|...+..+.|.| .+..+++++.|+.+++||...++ .+.....|.
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~-----~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~ 276 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 276 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecC-----CCCeeeeeeccccceEEeeccccccceeeeeecccC
Confidence 999999999999999877665556788999999998876 45689999999999999998764 345677899
Q ss_pred ccEEEEEeCCCC--eEEE--EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 241 LAVTCVKWGGDG--VIYT--GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 241 ~~v~~~~~~~~~--~l~t--~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
..|.+++|++++ .+++ |+.|++|++||+.+++....+.
T Consensus 277 ~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~-------------------------------------- 318 (420)
T 4gga_A 277 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-------------------------------------- 318 (420)
T ss_dssp SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--------------------------------------
T ss_pred CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--------------------------------------
Confidence 999999998754 4444 4589999999998876544322
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF 394 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~ 394 (500)
+...+.++.|+|+++.+++++ .|+.|++||+.++++
T Consensus 319 ------------------------------------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 319 ------------------------------------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp ------------------------------------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ------------------------------------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcE
Confidence 113467788999998887765 799999999999999
Q ss_pred EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCE
Q 010816 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEV 474 (500)
Q Consensus 395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V 474 (500)
+..+++|.+.|.++ +|+|+|++|+||+.|++|+|||+......+....+...+
T Consensus 357 v~~l~gH~~~V~~l---------------------------~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~ 409 (420)
T 4gga_A 357 VAELKGHTSRVLSL---------------------------TMSPDGATVASAAADETLRLWRCFELDPARRREREKASA 409 (420)
T ss_dssp EEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTTEEEEECCSCSSCC----------
T ss_pred EEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCc
Confidence 99999999999888 569999999999999999999998766555544454444
Q ss_pred EEEE
Q 010816 475 FAVD 478 (500)
Q Consensus 475 ~~l~ 478 (500)
....
T Consensus 410 ~~~s 413 (420)
T 4gga_A 410 AKSS 413 (420)
T ss_dssp ----
T ss_pred cccc
Confidence 3333
No 86
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.8e-33 Score=266.47 Aligned_cols=253 Identities=26% Similarity=0.421 Sum_probs=215.5
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP 179 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~ 179 (500)
+..++.+|.+.|.+++|+|++++|++|+.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||.
T Consensus 78 ~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~ 157 (340)
T 4aow_A 78 PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNT 157 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECT
T ss_pred eeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEe
Confidence 34567899999999999999999999999999999999998888888888999999999999999999999999999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS 258 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~ 258 (500)
...........+|...+..+.|.+.. ....+++++.|+.|++||++.++++..+.+|...|++++|++++ .|++|+
T Consensus 158 ~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 234 (340)
T 4aow_A 158 LGVCKYTVQDESHSEWVSCVRFSPNS---SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234 (340)
T ss_dssp TSCEEEEECSSSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCceEEEEeccccCcccceEEccCC---CCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence 87655555677899999999887643 33578899999999999999999999999999999999999986 688999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.|+.|++||+++++.+..+..+ ..+.++.++++ ..+++++.|
T Consensus 235 ~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~-------------------------------------~~~~~~~~d 276 (340)
T 4aow_A 235 KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPN-------------------------------------RYWLCAATG 276 (340)
T ss_dssp TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSS-------------------------------------SSEEEEEET
T ss_pred CCCeEEEEEeccCceeeeecCC-ceEEeeecCCC-------------------------------------CceeeccCC
Confidence 9999999999999988887754 46777777653 246788889
Q ss_pred CeEEEEcCCCCCC--------CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 339 FTMFLWEPAVSKQ--------PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 339 ~~v~~wd~~~~~~--------~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
+.|++||+..... ......+|...|++++|+|+|++|++|+.||.|+|||+++|.
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 9999999764321 112345788999999999999999999999999999998874
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3.6e-34 Score=297.69 Aligned_cols=267 Identities=28% Similarity=0.492 Sum_probs=211.4
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 101 SATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 101 ~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
...+.||...|.+++|+|++++|++|+.|++|+|||+.++.....+.+|...|.+++|+|++++|++|+.|++|++||..
T Consensus 423 ~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 423 QRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred cceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECC
Confidence 45678999999999999999999999999999999999999988999999999999999999999999999999999986
Q ss_pred CCCcc--cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEE
Q 010816 181 TGKPS--GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTG 257 (500)
Q Consensus 181 ~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~ 257 (500)
..... .....+|...|.++.|+|.. ....+++|+.|++|++||++..++...+.+|...|++++|++++ .|++|
T Consensus 503 ~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg 579 (694)
T 3dm0_A 503 GECKYTISEGGEGHRDWVSCVRFSPNT---LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASG 579 (694)
T ss_dssp SCEEEEECSSTTSCSSCEEEEEECSCS---SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCcceeeccCCCCCCCcEEEEEEeCCC---CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 54221 12235788999999998743 12479999999999999999999999999999999999999987 68899
Q ss_pred eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC
Q 010816 258 SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 258 ~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.|++|++||+++++.+..+.
T Consensus 580 ~~Dg~i~iwd~~~~~~~~~~~----------------------------------------------------------- 600 (694)
T 3dm0_A 580 GKDGVVLLWDLAEGKKLYSLE----------------------------------------------------------- 600 (694)
T ss_dssp ETTSBCEEEETTTTEEEECCB-----------------------------------------------------------
T ss_pred eCCCeEEEEECCCCceEEEec-----------------------------------------------------------
Confidence 999999999998875432211
Q ss_pred CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
+...|.+++|+|++.+|++++ |+.|++||+++++++..++.+..........
T Consensus 601 ---------------------~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------ 652 (694)
T 3dm0_A 601 ---------------------ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADN------ 652 (694)
T ss_dssp ---------------------CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--------------
T ss_pred ---------------------CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccc------
Confidence 123478999999999888775 5569999999999988877653321100000
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR 459 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~ 459 (500)
............+..++|+|+|++|++|+.||.|+||++.
T Consensus 653 --~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 653 --SGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred --cccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 0000000001123456899999999999999999999975
No 88
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=290.03 Aligned_cols=324 Identities=15% Similarity=0.184 Sum_probs=241.7
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEe-cCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC---CCccc-cc
Q 010816 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKC-TGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT---GKPSG-NP 188 (500)
Q Consensus 115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~---~~~~~-~~ 188 (500)
.|+|+++.+++++ .|+. +++.+..+ .+|.+.|.+++|+| ++++|++|+.||+|++||+.+ +.... ..
T Consensus 34 ~f~~~~~~~~~~~------~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~ 106 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL 106 (437)
T ss_dssp GGCCCCCCCCCCC------GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred hcCCccccccccc------cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence 4678888887765 4884 45667777 89999999999999 999999999999999999876 43222 12
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC---CCeEEEEecC------------ccccEEEEE--eCCC
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS---LRKCVICLSG------------HTLAVTCVK--WGGD 251 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~---~~~~~~~~~~------------h~~~v~~~~--~~~~ 251 (500)
..+|...|.++.|.| +...+++|+.||.|++||+. .+++...+.+ +...+.++. ++++
T Consensus 107 ~~~h~~~v~~~~~~~-----~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 107 TYDCSSTVTQITMIP-----NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp EEECSSCEEEEEECT-----TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred eccCCCCEEEEEEeC-----CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 226899999999986 44689999999999999994 5544443333 334455555 3344
Q ss_pred C-eEEEEeCCCeEEEEeCCCCeeEEEeec--CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 252 G-VIYTGSQDCTIKVWETTQGKLIRELKG--HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 252 ~-~l~t~~~dg~i~lwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
+ .+++|+.|+.|++||+++++.+..+.. |...|.+++++++
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~------------------------------------ 225 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE------------------------------------ 225 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT------------------------------------
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC------------------------------------
Confidence 4 688999999999999999999999987 7889999998875
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeee-cccCcEEEEEEC----CCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQQLVNHVYFS----PDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~~~v~~l~~s----p~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~ 403 (500)
+..+++|+.|++|++||++... ....+. +|...|.+++|+ |++.+|++|+.||.|++||+.+++++..+.+|..
T Consensus 226 ~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 304 (437)
T 3gre_A 226 CCVLILGTTRGIIDIWDIRFNV-LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDE 304 (437)
T ss_dssp SCEEEEEETTSCEEEEETTTTE-EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSS
T ss_pred CCEEEEEcCCCeEEEEEcCCcc-EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCC
Confidence 3579999999999999987633 233333 777889999665 5688999999999999999999999999999987
Q ss_pred cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCccc---CEEEEEEc
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHAD---EVFAVDWS 480 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~---~V~~l~~s 480 (500)
.+..+.+........... ..-......+..++|+ ++++|++|+.|+.|++||+.+++....+.+|.. .+....++
T Consensus 305 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (437)
T 3gre_A 305 QPSMEHFLPIEKGLEELN-FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVT 382 (437)
T ss_dssp CCCGGGGSCBCSSGGGCC-CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEE
T ss_pred CCccceecccccccccce-ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEee
Confidence 765443322110000000 0001123446667888 789999999999999999999998888887643 34555666
Q ss_pred CCCCEEEEE
Q 010816 481 PDGEKVASG 489 (500)
Q Consensus 481 ~dg~~l~s~ 489 (500)
++..+++..
T Consensus 383 ~~~~~~~~~ 391 (437)
T 3gre_A 383 ANLTMLLRK 391 (437)
T ss_dssp TTEEEEEEE
T ss_pred cceEEEEEe
Confidence 665554443
No 89
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=2e-35 Score=285.56 Aligned_cols=276 Identities=11% Similarity=0.055 Sum_probs=183.0
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCCCcc----cccccCcccceEEEEeeeeecC---CCCceEEEEeCCCcEEEEECCCC
Q 010816 158 WSADGKHLVSGSKAGELQCWDPQTGKPS----GNPLSGHKKWITGISWEPVHLN---APCRRFVSASKDGDARIWDVSLR 230 (500)
Q Consensus 158 ~s~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~s~s~dg~v~iwd~~~~ 230 (500)
+.+++.+|++|+.|++|++||.+++... ...+.+|...|.+++|+|.... .+++.|++||.|++|+|||++++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~ 176 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE 176 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC
Confidence 3445668999999999999999887542 2357899999999999985432 24568999999999999999998
Q ss_pred eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 231 KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 231 ~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
.++..+.+|..+|.+++|+|++ .|++|+.|++|++||+++++.......+.......
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~--------------------- 235 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW--------------------- 235 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC---------------------
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce---------------------
Confidence 8888888999999999999875 58999999999999999887654433221110000
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC-CCCCEEEEEeCCCcEEEE
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASFDKSIKLW 387 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~lasgs~Dg~i~lw 387 (500)
..+..... ........+|...+.++.|+ |+|+.|++++.|+++++|
T Consensus 236 -----------------------~~s~~~~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vw 282 (393)
T 4gq1_A 236 -----------------------LLTLNTLP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRW 282 (393)
T ss_dssp -----------------------SEEEESGG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEE
T ss_pred -----------------------EEeccccc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEE
Confidence 00000000 00111234677888899986 799999999999999999
Q ss_pred eCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEEECCCcccccc
Q 010816 388 NGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLKQD 466 (500)
Q Consensus 388 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~ 466 (500)
|+.+++....+.+|...+..+.+..-.. .............+.+ ++.++++|+.||.|+|||+.+++....
T Consensus 283 d~~~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 283 NLFANNDYNEISDSTMKLGPKNLLPNVQ--------GISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp EC-------------------CCSCSEE--------EECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred ECccCCCCceEeeecCccccEEEccccc--------cccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 9999988888888887776654421100 0000011111112222 455777888999999999999988888
Q ss_pred ccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 467 LPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 467 ~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
+.+|...|.+++|||||++||+++.||.+
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~Gv~ 383 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGSVL 383 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 88899999999999999999999998854
No 90
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-34 Score=274.67 Aligned_cols=251 Identities=20% Similarity=0.353 Sum_probs=206.2
Q ss_pred eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc-ccccccCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 142 PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 142 ~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
++..+.+|.+.|.+++|+|++++|++|+.||.|++||+..+.. ....+.+|...|.++.|.+.. ++..+++++.||
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~~l~s~~~dg 79 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK---FGTILASCSYDG 79 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG---GCSEEEEEETTS
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC---CCCEEEEeccCC
Confidence 3455779999999999999999999999999999999974321 223567899999999997531 246899999999
Q ss_pred cEEEEECCCCe--EEEEecCccccEEEEEeCCC--C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 221 DARIWDVSLRK--CVICLSGHTLAVTCVKWGGD--G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 221 ~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~--~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
.|++||+..++ .+..+.+|...|.+++|+++ + .+++++.|+.|++||+.++....
T Consensus 80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-------------------- 139 (379)
T 3jrp_A 80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS-------------------- 139 (379)
T ss_dssp CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC--------------------
T ss_pred EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee--------------------
Confidence 99999999887 77788899999999999987 4 68899999999999987642110
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-----
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP----- 370 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp----- 370 (500)
...+.+|...|.+++|+|
T Consensus 140 ---------------------------------------------------------~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 140 ---------------------------------------------------------PIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp ---------------------------------------------------------EEEEECCTTCEEEEEECCCC---
T ss_pred ---------------------------------------------------------eEEecCCCCceEEEEEcCccccc
Confidence 011234556677777777
Q ss_pred --------CCCEEEEEeCCCcEEEEeCCCCc----eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEc
Q 010816 371 --------DGQWVASASFDKSIKLWNGTTGK----FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWS 438 (500)
Q Consensus 371 --------~g~~lasgs~Dg~i~lwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 438 (500)
++.+|++|+.||.|++||++++. ++..+.+|..+|.++ +|+
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~---------------------------~~s 215 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDV---------------------------AWS 215 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEE---------------------------EEC
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEE---------------------------EEC
Confidence 79999999999999999998764 456778899888877 568
Q ss_pred CC---CCEEEEEECCCcEEEEECCCcc-----ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 439 AD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 439 ~~---~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+ +.+|++++.||.|++||+++++ .......|...|++++|+|+|++|++++.||.|++|+
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence 99 8999999999999999998863 2233445888999999999999999999999999997
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=6e-34 Score=276.54 Aligned_cols=284 Identities=22% Similarity=0.326 Sum_probs=228.2
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEEeCCCC----ceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 111 VLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQ----TPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 111 V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~----~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
...++++|+...+ ++++.||.|+||++... ..+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 3458888887644 46789999999999654 23445678999999999999 899999999999999999988742
Q ss_pred ------ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe--cCccccEEEEEeCCCC-eEE
Q 010816 185 ------SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL--SGHTLAVTCVKWGGDG-VIY 255 (500)
Q Consensus 185 ------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~-~l~ 255 (500)
....+.+|...|.++.|+|.. ...+++++.|+.|++||+++++++..+ .+|...|.+++|++++ .|+
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTA----QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSB----TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCC----CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 223467899999999998742 247999999999999999999999999 8999999999999887 689
Q ss_pred EEeCCCeEEEEeCCCCeeEEEe-ecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 256 TGSQDCTIKVWETTQGKLIREL-KGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+++.|+.|++||+++++.+..+ ..|... +..+.++++ +..++
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~l~ 236 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE------------------------------------GKILT 236 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST------------------------------------TEEEE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC------------------------------------CcEEE
Confidence 9999999999999999998888 667654 777777664 34577
Q ss_pred Ee---eCCCeEEEEcCCCCCCCcee-eecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCce-EEEEeCC--cccE
Q 010816 334 SG---SDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTTGKF-VAVFRGH--VGPV 405 (500)
Q Consensus 334 s~---s~d~~v~~wd~~~~~~~~~~-~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~~-~~~~~~h--~~~v 405 (500)
+| +.|+.|++||......+... ...|...+.+++|+|++++|+ +|+.||.|++||+.+++. +..+..| ..++
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v 316 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQ 316 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCC
T ss_pred EeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcc
Confidence 77 78999999998775543333 336778899999999999986 455799999999998873 4444433 3555
Q ss_pred EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc
Q 010816 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
.++ +|+|++.++++ .|+.+++|++.+++.
T Consensus 317 ~~~---------------------------~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 317 RGM---------------------------GYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SEE---------------------------EECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred cce---------------------------EEeccccccee--cceeEEEEEcCCCcE
Confidence 444 67999988874 567999999877543
No 92
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.4e-33 Score=273.40 Aligned_cols=264 Identities=16% Similarity=0.203 Sum_probs=216.9
Q ss_pred ccccccCCcccEEEEEEcCC----C---CeEEEEeCCCcEEEEeCCCCce-----eEEecCC-----CCCEEEEEEc---
Q 010816 100 CSATIAGHTEAVLSVAFSPD----G---RQLASGSGDTTVRLWDLNTQTP-----MFKCTGH-----KNWVLCIAWS--- 159 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~----~---~~lat~~~d~~i~iwd~~~~~~-----~~~~~~h-----~~~v~~v~~s--- 159 (500)
+...+.+|...|.+++|+|+ + ++|++++.|+.|++||+.++.. +..+.+| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 133 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASN 133 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeecc
Confidence 45567899999999999999 9 9999999999999999988876 7788888 5999999999
Q ss_pred -CCCCE-EEEEeCCCeEEEEeCCC------CCcccc----cc-------cCcccceEEEEeeeeecCCCCceEEEEeCCC
Q 010816 160 -ADGKH-LVSGSKAGELQCWDPQT------GKPSGN----PL-------SGHKKWITGISWEPVHLNAPCRRFVSASKDG 220 (500)
Q Consensus 160 -~~~~~-l~s~~~d~~i~~wd~~~------~~~~~~----~~-------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg 220 (500)
|++++ |++++.|+.|++||+.+ ++.... .+ ..|...+.++.|.| ++ .+++++.|+
T Consensus 134 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~-~l~~~~~dg 207 (397)
T 1sq9_A 134 DRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE-----RG-LIATGFNNG 207 (397)
T ss_dssp ----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT-----TS-EEEEECTTS
T ss_pred CCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC-----Cc-eEEEEeCCC
Confidence 99999 99999999999999987 554330 22 45788899999976 44 899999999
Q ss_pred cEEEEECCCCeEEEEecC---c---cccEEEEEeCCCC-eEEEEeCC---CeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816 221 DARIWDVSLRKCVICLSG---H---TLAVTCVKWGGDG-VIYTGSQD---CTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (500)
Q Consensus 221 ~v~iwd~~~~~~~~~~~~---h---~~~v~~~~~~~~~-~l~t~~~d---g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~ 290 (500)
.|++||+++++.+..+.. | ...|.+++|++++ .|++++.| +.|++||+++++.+..+......
T Consensus 208 ~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~------- 280 (397)
T 1sq9_A 208 TVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHS------- 280 (397)
T ss_dssp EEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC----------
T ss_pred cEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCccc-------
Confidence 999999999999999998 9 9999999999876 68889999 99999999988766554321000
Q ss_pred CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (500)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp 370 (500)
. ........|...|.+++|+|
T Consensus 281 ---------------------------------------~--------------------~~~~~~~~~~~~v~~~~~~~ 301 (397)
T 1sq9_A 281 ---------------------------------------S--------------------QASLGEFAHSSWVMSLSFND 301 (397)
T ss_dssp ----------------------------------------------------------------CCBSBSSCEEEEEECS
T ss_pred ---------------------------------------c--------------------cccccccccCCcEEEEEECC
Confidence 0 00001224778899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceEEEEe------CC---------------cccEEEEEeeeeeeecCCCCceeeeecc
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKFVAVFR------GH---------------VGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~~~~~~------~h---------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 429 (500)
++++|++++.||.|++||+.+++.+..+. +| ..+|.++
T Consensus 302 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~--------------------- 360 (397)
T 1sq9_A 302 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDV--------------------- 360 (397)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEE---------------------
T ss_pred CCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEE---------------------
Confidence 99999999999999999999999999999 77 7777766
Q ss_pred ccceeeEEcCCC----------CEEEEEECCCcEEEEECCCcc
Q 010816 430 CCMSLYSWSADS----------RLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 430 ~~~~~~~~s~~~----------~~l~s~s~d~~v~iwd~~~~~ 462 (500)
+|+|++ ++|++|+.||.|++||+++++
T Consensus 361 ------~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 361 ------KFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ------EEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ------EeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 678998 799999999999999987653
No 93
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-34 Score=279.20 Aligned_cols=243 Identities=16% Similarity=0.197 Sum_probs=196.3
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC-cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEE
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK-PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIW 225 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iw 225 (500)
..+.++|.+++|+|++++|++|+.|+.|++||+.++. .....+.+|...|.++.|+| ++.++++++.|+.|++|
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~d~~v~vw 82 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAP-----KSNRIVTCSQDRNAYVY 82 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECT-----TTCCEEEEETTSSEEEC
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeC-----CCCEEEEEeCCCeEEEE
Confidence 3467789999999999999999999999999998873 33346788999999999987 34689999999999999
Q ss_pred ECCCCe---EEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeecccc
Q 010816 226 DVSLRK---CVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 226 d~~~~~---~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
|+.+++ ....+.+|...|.+++|++++ .|++++.|+.|++||+.+++..
T Consensus 83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--------------------------- 135 (377)
T 3dwl_C 83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--------------------------- 135 (377)
T ss_dssp ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C---------------------------
T ss_pred EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc---------------------------
Confidence 999877 677788999999999999876 6889999999999998654310
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEEeC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~ 380 (500)
.....+.+ |...|.+++|+|++++|++++.
T Consensus 136 -------------------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 136 -------------------------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp -------------------------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred -------------------------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeC
Confidence 00112233 7788999999999999999999
Q ss_pred CCcEEEEeCCC------------------CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816 381 DKSIKLWNGTT------------------GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (500)
Q Consensus 381 Dg~i~lwd~~~------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 442 (500)
|+.|++||+.. ++++..+ +|.+.+.++ +|+|+++
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~---------------------------~~sp~~~ 218 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAV---------------------------GFSPSGN 218 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEE---------------------------EECTTSS
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEE---------------------------EECCCCC
Confidence 99999999853 4455555 777777666 6799999
Q ss_pred EEEEEECCCcEEEEECCCccc----cccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 443 LLLSGSKDSTLKVWDIRTQKL----KQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~~~~----~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
+|++++.|+.|++||+++++. +..+.+|...|.+++|+|+|++|++++.|+.+.+|
T Consensus 219 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 219 ALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQ 278 (377)
T ss_dssp CEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEEC
T ss_pred EEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEE
Confidence 999999999999999999887 78889999999999999999999999888877444
No 94
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-34 Score=269.51 Aligned_cols=278 Identities=12% Similarity=0.077 Sum_probs=216.2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc
Q 010816 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK 194 (500)
Q Consensus 115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 194 (500)
.+.+++.+|++|+.||+|++||+.+++.+..+. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~------------- 104 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGN------------- 104 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTT-------------
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccC-------------
Confidence 445678899999999999999999988877665 466788888887 99999999999998642
Q ss_pred ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCC--CC-eEEEEeCCCeEEEEeCCC
Q 010816 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGG--DG-VIYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~--~~-~l~t~~~dg~i~lwd~~~ 270 (500)
.+.+||+.+++.+..+. +|...|.++.|++ ++ .+++++.||+|++||+++
T Consensus 105 --------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 105 --------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp --------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred --------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 34667777777555544 7778999999998 65 688899999999999999
Q ss_pred CeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816 271 GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (500)
Q Consensus 271 ~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~ 349 (500)
++.+.... .+...+.+++++|+ +..+++|+.|+.|++||++..
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pd------------------------------------g~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKD------------------------------------SLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTT------------------------------------SCEEEEECTTSCEEEEESSCT
T ss_pred CcEEEEEecCCCCceEEEEECCC------------------------------------CCEEEEEcCCCEEEEEECCCC
Confidence 98876663 34557888888875 357899999999999999876
Q ss_pred CCCceeeec-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816 350 KQPKTRMTG-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (500)
Q Consensus 350 ~~~~~~~~~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
......+.+ |...|++++|+|+|.+|++++ |+.|++||+++++.+..+..+......+.
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~------------------- 262 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTG------------------- 262 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----C-------------------
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeeccccccccccc-------------------
Confidence 655355666 999999999999999999999 45999999998876544443221111100
Q ss_pred cccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccccccccCcccCEEEEEEcC---CCCEEEEEeCCCcEEEec
Q 010816 429 SCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSP---DGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 429 ~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~---dg~~l~s~~~D~~v~iW~ 499 (500)
...++|+|+|++|++++. |+.|++|++.+....... ..+..+.|+| +++.|++++.|+.++++.
T Consensus 263 ---~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~ 330 (343)
T 3lrv_A 263 ---TVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL 330 (343)
T ss_dssp ---CEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred ---ceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEE
Confidence 022478999999999998 999999998665432221 4577888998 889999999999998863
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=274.06 Aligned_cols=300 Identities=17% Similarity=0.114 Sum_probs=221.9
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc---eeEEec--------------------------------------
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT---PMFKCT-------------------------------------- 147 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~---~~~~~~-------------------------------------- 147 (500)
.++.+++|+|+|++|+++ .++.|++||+.+++ .+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999976666 57799999998887 444433
Q ss_pred ----------------CCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--CCCccccccc--CcccceEEEEeeeeec
Q 010816 148 ----------------GHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQ--TGKPSGNPLS--GHKKWITGISWEPVHL 206 (500)
Q Consensus 148 ----------------~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~--~~~~~~~~~~--~~~~~v~~~~~~~~~~ 206 (500)
+|.+.|.+++|+|++++| ++++.|+.|++||+. +++.... +. .|...|.++.|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~~~~~v~~~~~sp--- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL-RKRFCFSKRPNAISIAE--- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEE-EEEEECSSCEEEEEECT---
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeee-eecccCCCCceEEEEcC---
Confidence 234479999999999996 899999999999998 6665432 33 5668899999987
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEE----EecCccccEEEEEeCCC---C-eEEEEeCCCeEEEEeCCCCeeEEEee
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVI----CLSGHTLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~---~-~l~t~~~dg~i~lwd~~~~~~~~~~~ 278 (500)
++..+++|+.||.+++|++..+.... .+.+|...|.+++|+++ + .|++|+.|+.|++||+.+++.+..
T Consensus 160 --~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~-- 235 (450)
T 2vdu_B 160 --DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK-- 235 (450)
T ss_dssp --TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--
T ss_pred --CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--
Confidence 45689999999999999998776443 67789999999999998 6 688999999999999876543221
Q ss_pred cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (500)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~ 358 (500)
.+.+
T Consensus 236 ----------------------------------------------------------------------------~~~~ 239 (450)
T 2vdu_B 236 ----------------------------------------------------------------------------WLFG 239 (450)
T ss_dssp ----------------------------------------------------------------------------ECCC
T ss_pred ----------------------------------------------------------------------------eecC
Confidence 1236
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCce--eeeeccccceeeE
Q 010816 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFY--CVVDMSCCMSLYS 436 (500)
Q Consensus 359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 436 (500)
|...|.+++|+ ++++|++|+.|+.|++||+.+++++..+..+... ..+.+.. ...+..+. ........+..++
T Consensus 240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-KPYLNDQ---HLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-GGGCCTT---SBC----------CBCCCEEEEE
T ss_pred CCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-hhhhhhc---ccccccccccccccceEEEEEEE
Confidence 77889999999 9999999999999999999999988877643210 0000000 00000000 0001122345568
Q ss_pred EcCCCCEEEEEE-CCCcEEEEEC--CCc---cccccccCcccCEEEEEEcCCCCEEEEEeC------CCcEEEec
Q 010816 437 WSADSRLLLSGS-KDSTLKVWDI--RTQ---KLKQDLPGHADEVFAVDWSPDGEKVASGGK------DRVLKLWM 499 (500)
Q Consensus 437 ~s~~~~~l~s~s-~d~~v~iwd~--~~~---~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~------D~~v~iW~ 499 (500)
|+|++++|++++ .|+.|++|++ ..+ +.+..+.+| +.|.+++|+|++.+++.++. +..|++|.
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 899999999999 8999999999 555 566677788 88999999996533333343 45578774
No 96
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=295.64 Aligned_cols=248 Identities=23% Similarity=0.423 Sum_probs=202.3
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCC--CCceeEEecCCCCCEEEEEEcCC--CCEEEEEeCCCeEEEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLN--TQTPMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAGELQCW 177 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~--~~~~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~~i~~w 177 (500)
..+.||.+.|++++|+|++++|++|+.||+|+|||+. +......+.+|.++|.+++|+|+ +++|++|+.||.|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 4578999999999999999999999999999999997 44566778899999999999988 8999999999999999
Q ss_pred eCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC--C-eE
Q 010816 178 DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD--G-VI 254 (500)
Q Consensus 178 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l 254 (500)
|+.+++. ..+..+.+|...|.++.|+++ + .+
T Consensus 83 d~~~~~~----------------------------------------------~~~~~~~~h~~~V~~v~~sp~~~~~~l 116 (753)
T 3jro_A 83 KEENGRW----------------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPLL 116 (753)
T ss_dssp EEETTEE----------------------------------------------EEEEEECCCSSCEEEEEECCGGGCSEE
T ss_pred ECCCCcc----------------------------------------------cccccccCCCCCeEEEEECCCCCCCEE
Confidence 8765421 012234568888999999986 4 68
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++|+.||.|++||++++...
T Consensus 117 ~sgs~dg~I~vwdl~~~~~~------------------------------------------------------------ 136 (753)
T 3jro_A 117 LVASSDGKVSVVEFKENGTT------------------------------------------------------------ 136 (753)
T ss_dssp EEEETTSEEEEEECCSSSCC------------------------------------------------------------
T ss_pred EEEeCCCcEEEEEeecCCCc------------------------------------------------------------
Confidence 89999999999998764211
Q ss_pred eeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-------------CCCEEEEEeCCCcEEEEeCCCC----ceEEE
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-------------DGQWVASASFDKSIKLWNGTTG----KFVAV 397 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-------------~g~~lasgs~Dg~i~lwd~~~~----~~~~~ 397 (500)
....+.+|...|.+++|+| ++.+|++|+.||.|++||+.++ .....
T Consensus 137 -----------------~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 199 (753)
T 3jro_A 137 -----------------SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLEST 199 (753)
T ss_dssp -----------------CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEE
T ss_pred -----------------ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeee
Confidence 0112235566677777777 6899999999999999999877 55677
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC---CCEEEEEECCCcEEEEECCCcc-----ccccccC
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD---SRLLLSGSKDSTLKVWDIRTQK-----LKQDLPG 469 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~---~~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~ 469 (500)
+.+|.++|.++ +|+|+ +.+|++|+.||.|++||+.+++ ......+
T Consensus 200 ~~~h~~~V~~l---------------------------~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 252 (753)
T 3jro_A 200 LEGHSDWVRDV---------------------------AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK 252 (753)
T ss_dssp ECCCSSCEEEE---------------------------EECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSC
T ss_pred ecCCCCcEEEE---------------------------EeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCC
Confidence 88999998887 56899 8999999999999999998864 3344556
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 470 HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 470 h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|.+.|++++|+|+|++|++|+.||.|++|+
T Consensus 253 ~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 253 FPDVLWRASWSLSGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp CSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred CCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence 889999999999999999999999999997
No 97
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-34 Score=277.04 Aligned_cols=259 Identities=10% Similarity=0.135 Sum_probs=207.7
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
....+|.+|+|+|||+++||++.|++|+ |...++. +.+|...|.+++|+|.. .++.+.+|+
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~----l~gh~~~v~~V~FsPdg------------~~~~~~~~~- 73 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD----INCNSKNLFHVKEFPLE------------FENKLDFEL- 73 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC----CSSBGGGTEEEEEECCC------------CCCTTTTSC-
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccce----ecCCCccEEEEEECCCC------------CcceEEEEe-
Confidence 4567899999999999999999999999 7666543 47899999999998732 344444444
Q ss_pred CCCeEEEEec-CccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEEeecCCc-----eEEEEEecCcceeeeccc
Q 010816 228 SLRKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAF 300 (500)
Q Consensus 228 ~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~ 300 (500)
+++...+. +|...|.+++|+|+|. |++++.||.|++||... .+..+. |.. .+.+++++|+
T Consensus 74 --~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPD-------- 140 (588)
T 2j04_A 74 --AQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPI-------- 140 (588)
T ss_dssp --CCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSS--------
T ss_pred --CCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCC--------
Confidence 33322333 5688899999999985 99999999999999543 566666 554 4999999986
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC------Cceee----ecccCcEEEEEECC
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------PKTRM----TGHQQLVNHVYFSP 370 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~------~~~~~----~~h~~~v~~l~~sp 370 (500)
+..+++|+.||+|++||+..... ....+ .+|.++|.+++|+|
T Consensus 141 ----------------------------G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP 192 (588)
T 2j04_A 141 ----------------------------ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE 192 (588)
T ss_dssp ----------------------------SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET
T ss_pred ----------------------------CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcC
Confidence 45799999999999999876532 12333 67889999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce---EEEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKF---VAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~---~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
|| +++++.|++|++||+.+++. ..+++ +|...|.++ +|+ |+.||+
T Consensus 193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv---------------------------aFs--g~~LAS 241 (588)
T 2j04_A 193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL---------------------------KIV--DYKVVL 241 (588)
T ss_dssp TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE---------------------------EEE--TTEEEE
T ss_pred Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE---------------------------EEE--CCEEEE
Confidence 99 88899999999999988773 35564 777777666 567 689998
Q ss_pred EECCCcEEEEECCCccccccccCcccCEEEEEE--cCCCCEEEEEeCCCcEEEec
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW--SPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~s~~~D~~v~iW~ 499 (500)
++ +++|++||+.+++......+|.+.|+.++| +||+..|++++.||+ ++|.
T Consensus 242 a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 242 TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 87 699999999988774333389999999999 999999999999999 9995
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-32 Score=259.62 Aligned_cols=255 Identities=16% Similarity=0.269 Sum_probs=216.9
Q ss_pred cccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-----Ce
Q 010816 99 RCSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-----GE 173 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~ 173 (500)
.+...+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.+ +.
T Consensus 65 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~ 143 (369)
T 3zwl_B 65 ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143 (369)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCE
T ss_pred hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCE
Confidence 4556788999999999999999999999999999999999998887776 88999999999999999999999 99
Q ss_pred EEEEeCCCCCccc----------ccccCccc--ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc
Q 010816 174 LQCWDPQTGKPSG----------NPLSGHKK--WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT 240 (500)
Q Consensus 174 i~~wd~~~~~~~~----------~~~~~~~~--~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~ 240 (500)
|++||+..+.... ..+..|.. .+.++.|.| ++..+++++.||.|++||+++ .+.+..+..|.
T Consensus 144 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 218 (369)
T 3zwl_B 144 INIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-----KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE 218 (369)
T ss_dssp EEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-----GGCEEEEEETTSEEEEEETTTTTEEEEEEECCS
T ss_pred EEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC-----CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC
Confidence 9999987664321 12234444 788888877 346899999999999999998 78888899999
Q ss_pred ccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHH
Q 010816 241 LAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALE 319 (500)
Q Consensus 241 ~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (500)
..|.++.|++++ .|++++.|+.|++||+.+++.+..+.
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----------------------------------------- 257 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----------------------------------------- 257 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------------------------------------
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-----------------------------------------
Confidence 999999999887 58889999999999998766544322
Q ss_pred hhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC--------------cEE
Q 010816 320 RYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--------------SIK 385 (500)
Q Consensus 320 ~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--------------~i~ 385 (500)
+...+.+++|+|+++++++++.++ .++
T Consensus 258 ---------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 298 (369)
T 3zwl_B 258 ---------------------------------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEAR 298 (369)
T ss_dssp ---------------------------------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEE
T ss_pred ---------------------------------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeE
Confidence 233467788888888888888877 899
Q ss_pred EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
+||..+++.+..+.+|.+.|.++ +|+|++++|++++.||.|++|+++.+....
T Consensus 299 ~~d~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 299 FYHKIFEEEIGRVQGHFGPLNTV---------------------------AISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EEETTTCCEEEEEECCSSCEEEE---------------------------EECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred EEecCCCcchhheecccCcEEEE---------------------------EECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 99999999999999999999887 569999999999999999999998765544
Q ss_pred c
Q 010816 466 D 466 (500)
Q Consensus 466 ~ 466 (500)
.
T Consensus 352 ~ 352 (369)
T 3zwl_B 352 K 352 (369)
T ss_dssp C
T ss_pred H
Confidence 3
No 99
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-33 Score=268.78 Aligned_cols=244 Identities=20% Similarity=0.309 Sum_probs=204.7
Q ss_pred CcccEEEEEEcCC----CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEeCCC
Q 010816 107 HTEAVLSVAFSPD----GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSA-DGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 107 h~~~V~~~~~sp~----~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~~~~l~s~~~d~~i~~wd~~~ 181 (500)
|.+.|.+++|+|+ +++|++|+.||.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6788999999999 67999999999999999999999999999999999999999 899999999999999999998
Q ss_pred CCccccc--ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-----------------------
Q 010816 182 GKPSGNP--LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL----------------------- 236 (500)
Q Consensus 182 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~----------------------- 236 (500)
++..... +.+|...|.++.|+| ++..+++++.|+.|++||+++++....+
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDL-----LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred CeEEEEecccccccCceeEEEECC-----CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 8654432 268999999999987 4568999999999999999876544322
Q ss_pred -----cCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee--------------EEEeecCCceEEEEEecCcceeee
Q 010816 237 -----SGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL--------------IRELKGHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 237 -----~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~--------------~~~~~~~~~~v~~~~~~~~~~~~~ 297 (500)
.+|...|.++.|+ ...+++++.|+.|++||+.++.. +..+..|...|.+++++++.
T Consensus 223 ~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---- 297 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF---- 297 (366)
T ss_dssp SEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT----
T ss_pred ccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC----
Confidence 3489999999999 56899999999999999887643 55666666666666665530
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC---Cceeeecc--cCcEEEEEECCCC
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ---PKTRMTGH--QQLVNHVYFSPDG 372 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~---~~~~~~~h--~~~v~~l~~sp~g 372 (500)
.+..+++|+.|+.|++||+..... ....+.+| ...|++++|+|++
T Consensus 298 ------------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 347 (366)
T 3k26_A 298 ------------------------------WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDS 347 (366)
T ss_dssp ------------------------------TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTS
T ss_pred ------------------------------CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCC
Confidence 145799999999999999876542 22356666 7899999999999
Q ss_pred CEEEEEeCCCcEEEEeCC
Q 010816 373 QWVASASFDKSIKLWNGT 390 (500)
Q Consensus 373 ~~lasgs~Dg~i~lwd~~ 390 (500)
++|++++.||.|++||+.
T Consensus 348 ~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 348 SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SEEEEEETTSEEEEEEC-
T ss_pred CeEEEEeCCCEEEEEEec
Confidence 999999999999999975
No 100
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-32 Score=267.50 Aligned_cols=246 Identities=22% Similarity=0.412 Sum_probs=210.5
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC----------CeEEEEecCccccEEEEEeCCCC--eEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL----------RKCVICLSGHTLAVTCVKWGGDG--VIY 255 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~~~~~~~~--~l~ 255 (500)
....|...|++++|.|.. ...+++++.||.|++||+.. ...+..+.+|...|.+++|++++ .|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~----~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQN----ACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EEEEESSCCSEEEEETTE----EEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred EEEcCCCcEEEEEECCCC----CcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 356788999999998732 35799999999999999986 56778888999999999999875 699
Q ss_pred EEeCCCeEEEEeCCCCee-------EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 256 TGSQDCTIKVWETTQGKL-------IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
+|+.||.|++||+..+.. ...+..|...|.++++++..
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----------------------------------- 243 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH----------------------------------- 243 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC-----------------------------------
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC-----------------------------------
Confidence 999999999999987422 35567888899999988731
Q ss_pred CcEEEEeeCCCeEEEEcCCCCC--CCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCC-CceEEEEeCCccc
Q 010816 329 PERLVSGSDDFTMFLWEPAVSK--QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTT-GKFVAVFRGHVGP 404 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~--~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~-~~~~~~~~~h~~~ 404 (500)
...+++++.|+.|++||++... .....+..|...|++++|+|++. +|++|+.||.|++||+++ +..+..+.+|.++
T Consensus 244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~ 323 (430)
T 2xyi_A 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE 323 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC
Confidence 3578999999999999988653 45556778999999999999986 799999999999999998 5678889999999
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCC--------------ccccccccC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRT--------------QKLKQDLPG 469 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~--------------~~~~~~~~~ 469 (500)
+.++ +|+|++. +|++++.|+.|+|||+.. .+++..+.+
T Consensus 324 v~~i---------------------------~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (430)
T 2xyi_A 324 IFQV---------------------------QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGG 376 (430)
T ss_dssp EEEE---------------------------EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCC
T ss_pred EEEE---------------------------EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCC
Confidence 8887 5689885 799999999999999987 355667788
Q ss_pred cccCEEEEEEcCCCC-EEEEEeCCCcEEEec
Q 010816 470 HADEVFAVDWSPDGE-KVASGGKDRVLKLWM 499 (500)
Q Consensus 470 h~~~V~~l~~s~dg~-~l~s~~~D~~v~iW~ 499 (500)
|.+.|.+++|+|+++ .|++++.|+.|++|+
T Consensus 377 h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~ 407 (430)
T 2xyi_A 377 HTAKISDFSWNPNEPWIICSVSEDNIMQVWQ 407 (430)
T ss_dssp CSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred CCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence 999999999999999 899999999999996
No 101
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=7.7e-33 Score=272.56 Aligned_cols=248 Identities=16% Similarity=0.337 Sum_probs=196.9
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----------ccccccCcc------------cceEEEEeeeee
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SGNPLSGHK------------KWITGISWEPVH 205 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~~~~~~~~------------~~v~~~~~~~~~ 205 (500)
.|.+.|.+++|+|+|++||+|+.||.|++||+.+++. ....+.+|. ..|.++.|.|..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999987752 223466887 889999998742
Q ss_pred cCCCCceEEEEeCCCcEEEEECCCCeEE---------------------------------------EE-ecCccccEEE
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSLRKCV---------------------------------------IC-LSGHTLAVTC 245 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~ 245 (500)
....+++++.|+.|++||+..+... .. ..+|...|.+
T Consensus 106 ---~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 182 (447)
T 3dw8_B 106 ---NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINS 182 (447)
T ss_dssp ---SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCE
T ss_pred ---CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEE
Confidence 1157999999999999998765432 12 3678899999
Q ss_pred EEeCCCCe-EEEEeCCCeEEEEeCCCCe-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816 246 VKWGGDGV-IYTGSQDCTIKVWETTQGK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (500)
Q Consensus 246 ~~~~~~~~-l~t~~~dg~i~lwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (500)
++|++++. |++| .|+.|++||+.++. .+..
T Consensus 183 ~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~----------------------------------------------- 214 (447)
T 3dw8_B 183 ISINSDYETYLSA-DDLRINLWHLEITDRSFNI----------------------------------------------- 214 (447)
T ss_dssp EEECTTSSEEEEE-CSSEEEEEETTEEEEEEEE-----------------------------------------------
T ss_pred EEEcCCCCEEEEe-CCCeEEEEECCCCCceeee-----------------------------------------------
Confidence 99998874 5565 79999999987322 1111
Q ss_pred hcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCCCce----EEEE
Q 010816 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG-QWVASASFDKSIKLWNGTTGKF----VAVF 398 (500)
Q Consensus 324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g-~~lasgs~Dg~i~lwd~~~~~~----~~~~ 398 (500)
.+.. ...+.+|...|.+++|+|++ .+|++|+.||.|++||+++++. +..+
T Consensus 215 --------------------~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 269 (447)
T 3dw8_B 215 --------------------VDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLF 269 (447)
T ss_dssp --------------------EECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEE
T ss_pred --------------------eecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEe
Confidence 1100 01345788899999999998 9999999999999999999887 7888
Q ss_pred eCCcc------------cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC-ccccc
Q 010816 399 RGHVG------------PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT-QKLKQ 465 (500)
Q Consensus 399 ~~h~~------------~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~-~~~~~ 465 (500)
.+|.. .+.++ +|+|+|++|++++. +.|++||+++ ++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~ 321 (447)
T 3dw8_B 270 EEPEDPSNRSFFSEIISSISDV---------------------------KFSHSGRYMMTRDY-LSVKVWDLNMENRPVE 321 (447)
T ss_dssp CCC-----CCHHHHHTTCEEEE---------------------------EECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred ccCCCccccccccccCceEEEE---------------------------EECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence 88876 55555 67999999999999 9999999997 88888
Q ss_pred cccCcccC---------------EEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 466 DLPGHADE---------------VFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 466 ~~~~h~~~---------------V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+.+|... ++.++|+|++++|++|+.|+.|++|+
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEE
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEE
Confidence 88888631 34599999999999999999999997
No 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=263.38 Aligned_cols=253 Identities=17% Similarity=0.284 Sum_probs=206.4
Q ss_pred cCCcccEEEEEEcCC---CCeEEEEeCCCcEEEEeCCCCc-eeEEecCCCCCEEEEEE------cCCCCEEEEEeCCCeE
Q 010816 105 AGHTEAVLSVAFSPD---GRQLASGSGDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAW------SADGKHLVSGSKAGEL 174 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~---~~~lat~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~------s~~~~~l~s~~~d~~i 174 (500)
.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++. ++..+.+|...|.++.| +|++++|++++.|+.|
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i 141 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCE
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeE
Confidence 379999999999999 6999999999999999999887 78889999999999954 7899999999999999
Q ss_pred EEEeCCCCCcccccccCcc----cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC
Q 010816 175 QCWDPQTGKPSGNPLSGHK----KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG 250 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~ 250 (500)
++||+.+++.....+..|. ..+.++.|.+. ++.++..+++++.|+.|++||+++++... ...|...|.++.|++
T Consensus 142 ~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~ 219 (357)
T 3i2n_A 142 KVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNA-YNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDR 219 (357)
T ss_dssp EEECTTSCSSCSEEECCCTTSCCCCEEEEEEECC-CC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESC
T ss_pred EEEeCCCCCCcceeccccCCCCCCceEEEEEEec-cCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCC
Confidence 9999998763333343333 37888885441 22356789999999999999999988754 357888999999997
Q ss_pred ---C-CeEEEEeCCCeEEEEeCCCCeeEEEe-----ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 251 ---D-GVIYTGSQDCTIKVWETTQGKLIREL-----KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 251 ---~-~~l~t~~~dg~i~lwd~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
+ ..+++++.||.|++||+++++....+ ..|...|.+++++|+.
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------- 271 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN---------------------------- 271 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE----------------------------
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC----------------------------
Confidence 4 47899999999999999877654444 3889999999998752
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCC------------------CceeeecccCcEEEEEECCCCCEEE-EEeCCC
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQ------------------PKTRMTGHQQLVNHVYFSPDGQWVA-SASFDK 382 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~------------------~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg 382 (500)
...+++++.|+.|++||+..... ....+.+|...|.+++|+|+|++|+ +++.||
T Consensus 272 -------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~ 344 (357)
T 3i2n_A 272 -------RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQ 344 (357)
T ss_dssp -------EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred -------CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCC
Confidence 12689999999999999764332 2345678999999999999999998 899999
Q ss_pred cEEEEeCCCCce
Q 010816 383 SIKLWNGTTGKF 394 (500)
Q Consensus 383 ~i~lwd~~~~~~ 394 (500)
.|++||+.+.+.
T Consensus 345 ~i~iw~~~~~~~ 356 (357)
T 3i2n_A 345 TVRVLIVTKLNK 356 (357)
T ss_dssp EEEEEEECC---
T ss_pred cEEEEECCCccc
Confidence 999999987643
No 103
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-32 Score=263.06 Aligned_cols=252 Identities=15% Similarity=0.212 Sum_probs=212.8
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee--EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM--FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~--~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~w 177 (500)
+...+.+|.+.|.+++|+|++++|++++.|+.|++||+.++... ..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~ 123 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 123 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence 45567899999999999999999999999999999999887643 3446799999999999999999999999999999
Q ss_pred eCCCCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC------------------CCCeEEEEe
Q 010816 178 DPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV------------------SLRKCVICL 236 (500)
Q Consensus 178 d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~------------------~~~~~~~~~ 236 (500)
|+..++. ......+|...|.++.|.| ++..+++++.|+.|++||+ ..++++..+
T Consensus 124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (372)
T 1k8k_C 124 YFEQENDWWVCKHIKKPIRSTVLSLDWHP-----NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES 198 (372)
T ss_dssp EEETTTTEEEEEEECTTCCSCEEEEEECT-----TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC
T ss_pred EecCCCcceeeeeeecccCCCeeEEEEcC-----CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEec
Confidence 9987763 2333467889999999987 4468999999999999995 467888889
Q ss_pred cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 237 SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 237 ~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
.+|...|.++.|++++ .|++++.|+.|++||+++++.+..+..|...+.+++++++.
T Consensus 199 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------- 256 (372)
T 1k8k_C 199 SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES---------------------- 256 (372)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT----------------------
T ss_pred CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCC----------------------
Confidence 9999999999999887 78999999999999999999999999999999999988752
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCC--CC-------------------------------CC-------cee
Q 010816 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAV--SK-------------------------------QP-------KTR 355 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~--~~-------------------------------~~-------~~~ 355 (500)
..+++| .|+.+++|+... .. .. ...
T Consensus 257 --------------~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (372)
T 1k8k_C 257 --------------SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGL 321 (372)
T ss_dssp --------------EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCC
T ss_pred --------------CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccc
Confidence 245555 999999999765 10 00 112
Q ss_pred eecccCcEEEEEEC-CCC---CEEEEEeCCCcEEEEeCCCCc
Q 010816 356 MTGHQQLVNHVYFS-PDG---QWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 356 ~~~h~~~v~~l~~s-p~g---~~lasgs~Dg~i~lwd~~~~~ 393 (500)
..+|...|++++|+ ++| .+|++|+.||.|++||+.+++
T Consensus 322 ~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 322 DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp SSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 24899999999966 677 999999999999999987654
No 104
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=250.11 Aligned_cols=248 Identities=20% Similarity=0.367 Sum_probs=209.3
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQC 176 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~ 176 (500)
+...+.+|.+.|.+++|+|++++|++|+.|+.|++|++... .++..+.+|...|.+++| ++++|++++.|+.|++
T Consensus 51 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~ 128 (313)
T 3odt_A 51 LGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKV 128 (313)
T ss_dssp EEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred EEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEE
Confidence 34556789999999999999999999999999999998654 556778899999999999 6789999999999999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-ccccEEEEEeCCCCeEE
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~ 255 (500)
|| .++. ...+..|...+.++.|.|. +...+++++.|+.|++|| ..+....+.. |...+.++.|++++.++
T Consensus 129 ~d--~~~~-~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (313)
T 3odt_A 129 WK--EGSL-VYNLQAHNASVWDAKVVSF----SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199 (313)
T ss_dssp EE--TTEE-EEEEECCSSCEEEEEEEET----TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEE
T ss_pred Ec--CCcE-EEecccCCCceeEEEEccC----CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEE
Confidence 99 3332 2346778999999999773 346899999999999999 4566666776 89999999999999999
Q ss_pred EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 256 TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 256 t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+++.|+.|++||+++++.+..
T Consensus 200 ~~~~dg~i~i~d~~~~~~~~~----------------------------------------------------------- 220 (313)
T 3odt_A 200 SCSNDGLIKLVDMHTGDVLRT----------------------------------------------------------- 220 (313)
T ss_dssp EEETTSEEEEEETTTCCEEEE-----------------------------------------------------------
T ss_pred EccCCCeEEEEECCchhhhhh-----------------------------------------------------------
Confidence 999999999999887654332
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYC 415 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 415 (500)
+.+|...|.+++|+|++ .|++++.||.|++||+.+++.+..+..|..++.++
T Consensus 221 --------------------~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~------- 272 (313)
T 3odt_A 221 --------------------YEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSV------- 272 (313)
T ss_dssp --------------------EECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEE-------
T ss_pred --------------------hhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEE-------
Confidence 23466778999999999 58899999999999999999999999999888877
Q ss_pred ecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccc
Q 010816 416 FRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQD 466 (500)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~ 466 (500)
+|+|+++ +++++.||.|++||+++++....
T Consensus 273 --------------------~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 273 --------------------DCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp --------------------EECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred --------------------EEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 5689998 66799999999999998776543
No 105
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=8e-33 Score=264.37 Aligned_cols=244 Identities=14% Similarity=0.162 Sum_probs=183.2
Q ss_pred cccCCcccEEEEEEcCCCCeEEEE-----------eCCCcEEEEeCCCCceeEE---------ecCCCCCEEEEEEcCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASG-----------SGDTTVRLWDLNTQTPMFK---------CTGHKNWVLCIAWSADG 162 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~-----------~~d~~i~iwd~~~~~~~~~---------~~~h~~~v~~v~~s~~~ 162 (500)
.|.+|.+.|.+++++ ++.+++| +.|+++|+|++.+...... ...+...+.+++|+|||
T Consensus 68 ~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg 145 (365)
T 4h5i_A 68 ALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG 145 (365)
T ss_dssp ECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS
T ss_pred EccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC
Confidence 567899999888764 4556655 4577899998765432211 12345668888899988
Q ss_pred CEEEEE--eCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc
Q 010816 163 KHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT 240 (500)
Q Consensus 163 ~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~ 240 (500)
++|++| +.|++|++||++++ +++..+. |.
T Consensus 146 ~~la~as~~~d~~i~iwd~~~~------------------------------------------------~~~~~~~-~~ 176 (365)
T 4h5i_A 146 TVAAIASSKVPAIMRIIDPSDL------------------------------------------------TEKFEIE-TR 176 (365)
T ss_dssp SCEEEEESCSSCEEEEEETTTT------------------------------------------------EEEEEEE-CS
T ss_pred CEEEEEECCCCCEEEEeECCCC------------------------------------------------cEEEEeC-CC
Confidence 877644 35677777776544 2233332 55
Q ss_pred ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEE--eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE--LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
..|.+++|+|++.+++.+.++.+++|+..+++.+.. ...|...|.+++++|+
T Consensus 177 ~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-------------------------- 230 (365)
T 4h5i_A 177 GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-------------------------- 230 (365)
T ss_dssp SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEET--------------------------
T ss_pred CceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCC--------------------------
Confidence 678899999998655555566777888777766543 3567888999999876
Q ss_pred HhhhhhcCCCCcEEEEeeCCC----eEEEEcCCCCCC---CceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816 319 ERYNKIKGNAPERLVSGSDDF----TMFLWEPAVSKQ---PKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~----~v~~wd~~~~~~---~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~ 391 (500)
+..+++++.|+ .+++|+...... ....+.+|...|++++|+|||++||+|+.|++|+|||+.+
T Consensus 231 ----------g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~ 300 (365)
T 4h5i_A 231 ----------DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD 300 (365)
T ss_dssp ----------TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred ----------CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC
Confidence 34677777776 578888654322 1235678999999999999999999999999999999999
Q ss_pred CceEEEE-eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 392 GKFVAVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 392 ~~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
++++..+ ++|..+|+++ +|||||++||+||.|++|||||+..
T Consensus 301 ~~~~~~~~~gH~~~V~~v---------------------------~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 301 LSMSKIFKQAHSFAITEV---------------------------TISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TEEEEEETTSSSSCEEEE---------------------------EECTTSCEEEEEETTSEEEEEECCT
T ss_pred CcEEEEecCcccCCEEEE---------------------------EECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9998875 7999999988 5699999999999999999999864
No 106
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.7e-32 Score=263.15 Aligned_cols=248 Identities=19% Similarity=0.305 Sum_probs=199.4
Q ss_pred CCCCceeEEecCCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEE
Q 010816 137 LNTQTPMFKCTGHKNWVLCIAWSADG-KHLVSGSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFV 214 (500)
Q Consensus 137 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~ 214 (500)
+........+.+|...|.+++|+|++ ++|++|+.|+.|++||+.+++..... ..+|...|.++.|+|. +...++
T Consensus 60 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~~~l~ 135 (383)
T 3ei3_B 60 LKSYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF----NTNQLF 135 (383)
T ss_dssp HTTCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT----EEEEEE
T ss_pred ccccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC----CCCEEE
Confidence 33444556778999999999999999 99999999999999999987654322 2479999999999873 235799
Q ss_pred EEeCCCcEEEEECCCCeEEEEecC---ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816 215 SASKDGDARIWDVSLRKCVICLSG---HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALS 290 (500)
Q Consensus 215 s~s~dg~v~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~ 290 (500)
+++.|+.|++||++. ..+..+.. |...|.+++|++++ .|++|+.|+.|++||++ ++.+
T Consensus 136 s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~---------------- 197 (383)
T 3ei3_B 136 VSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEI---------------- 197 (383)
T ss_dssp EEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEE----------------
T ss_pred EEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEE----------------
Confidence 999999999999986 44444543 44789999998876 57888899999999873 3222
Q ss_pred CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC
Q 010816 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP 370 (500)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp 370 (500)
..+.+|...|.+++|+|
T Consensus 198 ---------------------------------------------------------------~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 198 ---------------------------------------------------------------FKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp ---------------------------------------------------------------EEEECSSSCEEEEEECS
T ss_pred ---------------------------------------------------------------EEeccCCCcEEEEEECC
Confidence 12335777899999999
Q ss_pred CCC-EEEEEeCCCcEEEEeCCC----CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEE
Q 010816 371 DGQ-WVASASFDKSIKLWNGTT----GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLL 444 (500)
Q Consensus 371 ~g~-~lasgs~Dg~i~lwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l 444 (500)
+++ +|++|+.|+.|++||+.+ +.++..+ +|...+.++ +|+| ++++|
T Consensus 215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~---------------------------~~s~~~~~~l 266 (383)
T 3ei3_B 215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAA---------------------------YFNPTDSTKL 266 (383)
T ss_dssp SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEE---------------------------EECTTTSCEE
T ss_pred CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEE---------------------------EEcCCCCCEE
Confidence 998 999999999999999987 5666666 688888777 5699 99999
Q ss_pred EEEECCCcEEEEECCCccccccccCcc-----------------cCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 445 LSGSKDSTLKVWDIRTQKLKQDLPGHA-----------------DEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~-----------------~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
++++.|+.|++||+++++....+.+|. ..+..++|+|||++ +++.|++|++|+
T Consensus 267 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd 336 (383)
T 3ei3_B 267 LTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYD 336 (383)
T ss_dssp EEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEE
T ss_pred EEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEe
Confidence 999999999999999887766665543 34555777888777 888999999997
No 107
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.7e-33 Score=268.32 Aligned_cols=276 Identities=18% Similarity=0.274 Sum_probs=221.6
Q ss_pred EEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCc---ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 154 LCIAWSADGKHL-VSGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 154 ~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
..++++|+...+ ++++.||.|++|++.+... ....+.+|...|.++.|+|. +...+++|+.||.|++||+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~----~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPH----NDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTT----CTTEEEEEETTSEEEEEECCT
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCC----CCCEEEEEeCCCeEEEEEccC
Confidence 357788876544 4578999999999865421 22346789999999999873 346899999999999999988
Q ss_pred C-------eEEEEecCccccEEEEEeCCCC--eEEEEeCCCeEEEEeCCCCeeEEEe--ecCCceEEEEEecCcceeeec
Q 010816 230 R-------KCVICLSGHTLAVTCVKWGGDG--VIYTGSQDCTIKVWETTQGKLIREL--KGHGHWVNSLALSTEYALRTG 298 (500)
Q Consensus 230 ~-------~~~~~~~~h~~~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~ 298 (500)
+ +++..+.+|...|.+++|++++ .|++++.|+.|++||+.+++.+..+ ..|...|.+++++++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~------ 187 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD------ 187 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT------
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC------
Confidence 7 5678889999999999999985 6899999999999999999999998 789999999999875
Q ss_pred cccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCc-EEEEEECCCCCEEE
Q 010816 299 AFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQL-VNHVYFSPDGQWVA 376 (500)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~-v~~l~~sp~g~~la 376 (500)
+..+++++.|+.|++||+..... ...+ .+|... +.++.|+|++.+|+
T Consensus 188 ------------------------------~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (402)
T 2aq5_A 188 ------------------------------GALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSEGKILT 236 (402)
T ss_dssp ------------------------------SSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECSTTEEEE
T ss_pred ------------------------------CCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCCCcEEE
Confidence 34689999999999999876443 3334 677765 89999999999999
Q ss_pred EE---eCCCcEEEEeCCCCce-EEEEe-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECC
Q 010816 377 SA---SFDKSIKLWNGTTGKF-VAVFR-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKD 450 (500)
Q Consensus 377 sg---s~Dg~i~lwd~~~~~~-~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d 450 (500)
+| +.|+.|++||+.+++. +.... .|...+..+ +|+|++++|++ |+.|
T Consensus 237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~---------------------------~~s~~~~~l~~~g~~d 289 (402)
T 2aq5_A 237 TGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP---------------------------FFDPDTNIVYLCGKGD 289 (402)
T ss_dssp EEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE---------------------------EEETTTTEEEEEETTC
T ss_pred EeccCCCCceEEEEcCccccCCceEEeccCCCceeEE---------------------------EEcCCCCEEEEEEcCC
Confidence 99 7999999999988654 32222 344444443 67999999975 5579
Q ss_pred CcEEEEECCCccc-cccccC--cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 451 STLKVWDIRTQKL-KQDLPG--HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 451 ~~v~iwd~~~~~~-~~~~~~--h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+.|++||+.+++. +..+.. |...|.+++|+|++..+++ .|+.+++|+
T Consensus 290 g~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 290 SSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK 339 (402)
T ss_dssp SCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred CeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence 9999999998774 444444 4588999999999988764 566899996
No 108
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.1e-32 Score=246.56 Aligned_cols=283 Identities=16% Similarity=0.162 Sum_probs=200.1
Q ss_pred cEEEEEEcCCC-C--eEEEEeCCCcEEEEeCCCC---ceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 110 AVLSVAFSPDG-R--QLASGSGDTTVRLWDLNTQ---TPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 110 ~V~~~~~sp~~-~--~lat~~~d~~i~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
.+.++.|-..+ + -+++++ ..+|++|+..+. +.++.+.+|+.+|..+.|.||..-|++... |.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~ 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVAL-----------GN 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEE-----------CS
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeee-----------cc
Confidence 35555564433 2 344554 568999999988 788999999999999999998655544321 11
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe---CC
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS---QD 260 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~---~d 260 (500)
-+...|.++.++|.+.. -...+++++.+ +++|++. ++.++..+ .|
T Consensus 109 -------~~~~~v~sla~spd~~~-~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~g~d 156 (356)
T 2w18_A 109 -------LEIREIRALFCSSDDES-EKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGTLSD 156 (356)
T ss_dssp -------SSEEEEEEECC-------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESSSTT
T ss_pred -------ccccceEEEEECCCccc-cccEEEeCCCe--EEEEecC----------------------CCcEEEecccCCC
Confidence 13345677777663211 13456666633 6667653 34444443 58
Q ss_pred CeEEEEeC-CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC
Q 010816 261 CTIKVWET-TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF 339 (500)
Q Consensus 261 g~i~lwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~ 339 (500)
+.|++|++ .+|+.+..+..|...+..+++++.. ..++.+++++.|+
T Consensus 157 ~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~---------------------------------g~~~~LaSgS~D~ 203 (356)
T 2w18_A 157 QQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ---------------------------------GMQEALLGTTIMN 203 (356)
T ss_dssp CEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEE---------------------------------TSTTEEEEEETTS
T ss_pred CcEEEEEECCCCceeeeeccCCCceeeEEeeccC---------------------------------CCCceEEEecCCC
Confidence 99999998 5588888888888888888877610 1246899999999
Q ss_pred eEEEEcCCCCCCCceeeeccc---CcEEEEEECCCCCEE------------EEEeCCCcEEEEeCCCCceEEEE-----e
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQ---QLVNHVYFSPDGQWV------------ASASFDKSIKLWNGTTGKFVAVF-----R 399 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~---~~v~~l~~sp~g~~l------------asgs~Dg~i~lwd~~~~~~~~~~-----~ 399 (500)
+|++||+...+ ....+.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++++.++ .
T Consensus 204 TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~ 282 (356)
T 2w18_A 204 NIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPP 282 (356)
T ss_dssp EEEEEETTTCC-EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCT
T ss_pred cEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccC
Confidence 99999987654 344455543 467788999999886 67889999999999999987765 2
Q ss_pred CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEE-EEE
Q 010816 400 GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVD 478 (500)
Q Consensus 400 ~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~-~l~ 478 (500)
+|.+...+. +.++.++|+|+.|++|+|||+++++++.++.+|.+.+. .++
T Consensus 283 Gh~~~~lsg-----------------------------~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 283 GQAGRFLEG-----------------------------DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp TCCCCEEEE-----------------------------EEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CCcceeEcc-----------------------------ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 554432211 23478999999999999999999999999999988766 589
Q ss_pred EcCCCCEEEEEeCCCcEEEec
Q 010816 479 WSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 479 ~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|||||++|+||+.|++||||+
T Consensus 334 fSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECSSSSEEEEECTTSCEEEEE
T ss_pred ECCCCCEEEEEECCCcEEEec
Confidence 999999999999999999997
No 109
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=2e-32 Score=260.79 Aligned_cols=299 Identities=10% Similarity=0.087 Sum_probs=210.5
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCC
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQT 181 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~ 181 (500)
++.+|.+.|.+++|+|||++||+|+.|+ ++|||+.+......... ..+..+.+.++++.+ ++++.|++|++||..+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4578999999999999999999998775 78999987766544332 357888898888877 5678889999999998
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC-eEEEEecCccccEEEEEeCCCCeEEE--Ee
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR-KCVICLSGHTLAVTCVKWGGDGVIYT--GS 258 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~t--~~ 258 (500)
++.... + .+...|.++.|++. .++. ..|+.|++||+.+. +.+..+.. +...+++++ ..++. |+
T Consensus 91 ~~~~~~-~-~~~~~v~~v~~~~~-------~~~~-~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~-~~la~~sg~ 156 (355)
T 3vu4_A 91 KQDVSR-I-KVDAPVKDLFLSRE-------FIVV-SYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN-GLLVYSNEF 156 (355)
T ss_dssp TEEEEE-E-ECSSCEEEEEECSS-------EEEE-EETTEEEEEESSTTCCBSSCCEE---EEEEEEEET-TEEEEEESS
T ss_pred CcEEEE-E-ECCCceEEEEEcCC-------EEEE-EEcCEEEEEECCCCceeeEEecc---CCceEEEEc-cEEEEeCCC
Confidence 876543 2 25668888888652 3343 35789999999887 55544433 333444555 55555 68
Q ss_pred CCCeEEEEeCCCCe----------------eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhh
Q 010816 259 QDCTIKVWETTQGK----------------LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYN 322 (500)
Q Consensus 259 ~dg~i~lwd~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (500)
.||.|++||+.+++ .+..+.+|...|.+++++|+
T Consensus 157 ~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------------------------------ 206 (355)
T 3vu4_A 157 NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRK------------------------------ 206 (355)
T ss_dssp CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTT------------------------------
T ss_pred cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCC------------------------------
Confidence 99999999998865 26778899999999999885
Q ss_pred hhcCCCCcEEEEeeCCCe-EEEEcCCCCCCCceeee-c-ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE--EE
Q 010816 323 KIKGNAPERLVSGSDDFT-MFLWEPAVSKQPKTRMT-G-HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV--AV 397 (500)
Q Consensus 323 ~~~~~~~~~~~s~s~d~~-v~~wd~~~~~~~~~~~~-~-h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~--~~ 397 (500)
+..+++|+.|++ |++||+..... ...+. + |...|.+++|+|+|++|++++.|++|++||+..+... ..
T Consensus 207 ------g~~l~s~s~d~~~v~iwd~~~~~~-~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 207 ------SDMVATCSQDGTIIRVFKTEDGVL-VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp ------SSEEEEEETTCSEEEEEETTTCCE-EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred ------CCEEEEEeCCCCEEEEEECCCCcE-EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccc
Confidence 357999999998 99999876543 34455 5 9999999999999999999999999999999875321 11
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeee-ccccceeeEEcCCCCEEEEEECCCcEEEEECCCcc
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVD-MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQK 462 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~ 462 (500)
+.++ +....+...+.+ ....... .......++|+++++++++++.||.+++|++..++
T Consensus 280 ~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 280 LKGW---INMKYFQSEWSL----CNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp TTTT---EECCCCCCSSCS----EEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred ccce---eeccccccccce----eEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 1111 000000000000 0000000 01112457899999999999999999999976543
No 110
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=100.00 E-value=7.1e-31 Score=257.45 Aligned_cols=317 Identities=12% Similarity=0.088 Sum_probs=242.4
Q ss_pred ccEEEEE---EcCCCCeEEEE--------------eCCCcEEEEeC--CCC--ceeEEecCCCCCEEEEEEcCCCCEEEE
Q 010816 109 EAVLSVA---FSPDGRQLASG--------------SGDTTVRLWDL--NTQ--TPMFKCTGHKNWVLCIAWSADGKHLVS 167 (500)
Q Consensus 109 ~~V~~~~---~sp~~~~lat~--------------~~d~~i~iwd~--~~~--~~~~~~~~h~~~v~~v~~s~~~~~l~s 167 (500)
..+..++ |+|+++.++.. +.++.++||.+ .++ ..+..+..+ ..+.+++|+|++.++++
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~ 139 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFISRFKTG-FQPKSVRFIDNTRLAIP 139 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEEEEECS-SCBCCCEESSSSEEEEE
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEEEEcCC-CCceEEEEeCCCeEEEE
Confidence 4456666 67766655433 33343355544 334 344445444 44669999998778888
Q ss_pred EeCCCeEEEEeCCCCCcccc----cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE
Q 010816 168 GSKAGELQCWDPQTGKPSGN----PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV 243 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v 243 (500)
++.|+.|++||+.+++.... .+.+|...+.++.|.| ++..+++++.|+.|++||+.+++.+..+..|...+
T Consensus 140 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~ 214 (433)
T 3bws_A 140 LLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE-----HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWS 214 (433)
T ss_dssp BTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSE
T ss_pred eCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcC-----CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCe
Confidence 88899999999998875432 2457888999999865 34688999999999999999999998888999999
Q ss_pred EEEEeCCCC-eE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 244 TCVKWGGDG-VI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 244 ~~~~~~~~~-~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
.+++|++++ .+ ++++.|+.|++||+.+++.+..+..+. .+.+++++++.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g---------------------------- 265 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-LPRGLLLSKDG---------------------------- 265 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-EEEEEEECTTS----------------------------
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-CceEEEEcCCC----------------------------
Confidence 999999987 34 455589999999999998888776544 47778777652
Q ss_pred hhhcCCCCcEEEEee--------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCCC
Q 010816 322 NKIKGNAPERLVSGS--------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s--------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~~~ 392 (500)
..+++++ .|+.|++||+.... ......|...+.+++|+|+++ ++++++.|+.|++||+.++
T Consensus 266 --------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~--~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 266 --------KELYIAQFSASNQESGGGRLGIYSMDKEK--LIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp --------SEEEEEEEESCTTCSCCEEEEEEETTTTE--EEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred --------CEEEEEECCCCccccCCCeEEEEECCCCc--EEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 3455555 58899999986543 222345566889999999997 4567789999999999999
Q ss_pred ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC---------------CCcEEEEE
Q 010816 393 KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK---------------DSTLKVWD 457 (500)
Q Consensus 393 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~---------------d~~v~iwd 457 (500)
+.+..+. +...+..+ +|+|+|++|++++. ||.|++||
T Consensus 336 ~~~~~~~-~~~~~~~~---------------------------~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d 387 (433)
T 3bws_A 336 KVQKSIP-VFDKPNTI---------------------------ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVID 387 (433)
T ss_dssp EEEEEEE-CSSSEEEE---------------------------EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEE
T ss_pred cEEEEec-CCCCCCeE---------------------------EEcCCCCEEEEEecCCCccccccccccccceEEEEEE
Confidence 8877665 44444444 67999998888876 57999999
Q ss_pred CCCccccccccCcccCEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816 458 IRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK-DRVLKLWM 499 (500)
Q Consensus 458 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-D~~v~iW~ 499 (500)
+.+++.+..+.++ ..+.+++|+|||++|++++. |++|++|+
T Consensus 388 ~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 388 TTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp TTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 9999888877664 57899999999999998875 99999997
No 111
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.1e-31 Score=248.57 Aligned_cols=259 Identities=24% Similarity=0.420 Sum_probs=208.5
Q ss_pred cceEeEEecc--ccccc--ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCE
Q 010816 89 QAVFRIRPVN--RCSAT--IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKH 164 (500)
Q Consensus 89 ~~~~~~~~~~--~~~~~--~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~ 164 (500)
+...++|... .+..+ +.+|...|.+++|+|++++||+|+.|++|+|||+++++++..+.+|...+.++.+ ++..
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~ 121 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYI 121 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTE
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCE
Confidence 4455666543 33343 4578899999999999999999999999999999999999999999999887766 5679
Q ss_pred EEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE----EEEecCcc
Q 010816 165 LVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC----VICLSGHT 240 (500)
Q Consensus 165 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~----~~~~~~h~ 240 (500)
|++++.++.+++|+...+......+.+|...+..+.+.+ .+..+++++.|+.|++||+++++. ......|.
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 196 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-----DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-----TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-----CCCEEEEEecCcceeEEECCCCcccccceeeecccC
Confidence 999999999999999887666566788999998888765 446899999999999999987642 34456677
Q ss_pred ccEEEEEeCCCC--e--EEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 241 LAVTCVKWGGDG--V--IYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 241 ~~v~~~~~~~~~--~--l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
..|.++.+.+++ . +++++.+++|++||...+....
T Consensus 197 ~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~----------------------------------------- 235 (318)
T 4ggc_A 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS----------------------------------------- 235 (318)
T ss_dssp SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------------------------------
T ss_pred CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc-----------------------------------------
Confidence 788888887654 2 3456677778888765533221
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCCCce
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS--FDKSIKLWNGTTGKF 394 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs--~Dg~i~lwd~~~~~~ 394 (500)
...+...+..+.|+|++..+++++ .|+.|++||+.++++
T Consensus 236 ---------------------------------------~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~ 276 (318)
T 4ggc_A 236 ---------------------------------------AVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276 (318)
T ss_dssp ---------------------------------------EEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCE
T ss_pred ---------------------------------------cccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcE
Confidence 122345578889999988877654 799999999999999
Q ss_pred EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 395 VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 395 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
+..+++|.++|.++ +|+|+|++|++|+.|++|+|||+...
T Consensus 277 ~~~l~gH~~~V~~l---------------------------~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 277 VAELKGHTSRVLSL---------------------------TMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp EEEECCCSSCEEEE---------------------------EECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EEEEcCCCCCEEEE---------------------------EEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999999988 56999999999999999999998653
No 112
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.1e-32 Score=266.68 Aligned_cols=251 Identities=20% Similarity=0.366 Sum_probs=215.0
Q ss_pred cccCCcccEEEEEEcCC-CCeEEEEeCCCcEEEEeCCC----------CceeEEecCCCCCEEEEEEcCCCC-EEEEEeC
Q 010816 103 TIAGHTEAVLSVAFSPD-GRQLASGSGDTTVRLWDLNT----------QTPMFKCTGHKNWVLCIAWSADGK-HLVSGSK 170 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~-~~~lat~~~d~~i~iwd~~~----------~~~~~~~~~h~~~v~~v~~s~~~~-~l~s~~~ 170 (500)
...+|.+.|++++|+|+ +.+||+++.||.|+|||+.+ ..++..+.+|...|.+++|+|++. +|++|+.
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34679999999999997 78999999999999999976 567788889999999999999988 9999999
Q ss_pred CCeEEEEeCCCCCcc------cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC---eEEEEecCccc
Q 010816 171 AGELQCWDPQTGKPS------GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR---KCVICLSGHTL 241 (500)
Q Consensus 171 d~~i~~wd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~---~~~~~~~~h~~ 241 (500)
||.|++||+.++... ...+.+|...|.++.|+|.. ...|++++.|+.|++||++.+ +.+..+.+|..
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~----~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 278 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLH----ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTA 278 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSC----TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSS
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCC----CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCC
Confidence 999999999874321 22456899999999998742 358999999999999999977 56777789999
Q ss_pred cEEEEEeCCCC--eEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 242 AVTCVKWGGDG--VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 242 ~v~~~~~~~~~--~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
.|++++|++++ .+++|+.||.|++||+++ +..+..+..|...|.+++++|+.
T Consensus 279 ~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~------------------------- 333 (430)
T 2xyi_A 279 EVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN------------------------- 333 (430)
T ss_dssp CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSC-------------------------
T ss_pred CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCC-------------------------
Confidence 99999999876 588999999999999998 56688888899999999998752
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC-------------CCceeeecccCcEEEEEECCCCC-EEEEEeCCCcE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK-------------QPKTRMTGHQQLVNHVYFSPDGQ-WVASASFDKSI 384 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~-------------~~~~~~~~h~~~v~~l~~sp~g~-~lasgs~Dg~i 384 (500)
...+++++.|+.|++||+.... .......+|...|++++|+|+++ +|++++.||.|
T Consensus 334 ----------~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i 403 (430)
T 2xyi_A 334 ----------ETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403 (430)
T ss_dssp ----------TTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE
T ss_pred ----------CCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE
Confidence 2468999999999999986522 23345568899999999999998 99999999999
Q ss_pred EEEeCCCC
Q 010816 385 KLWNGTTG 392 (500)
Q Consensus 385 ~lwd~~~~ 392 (500)
++|++...
T Consensus 404 ~iw~~~~~ 411 (430)
T 2xyi_A 404 QVWQMAEN 411 (430)
T ss_dssp EEEEECHH
T ss_pred EEeEcccc
Confidence 99998653
No 113
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.4e-31 Score=246.94 Aligned_cols=218 Identities=22% Similarity=0.345 Sum_probs=176.7
Q ss_pred cccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCC--CCEEEEEeCCC
Q 010816 99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG 172 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~ 172 (500)
.+..++.||.++|.+++|+|+ +++||+|+.|++|+|||+.++. .+..+.+|...|.+++|+|+ +.+|++|+.|+
T Consensus 44 ~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~ 123 (297)
T 2pm7_B 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG 123 (297)
T ss_dssp CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC
Confidence 456788999999999999864 8999999999999999998763 55677889999999999997 88999999999
Q ss_pred eEEEEeCCCCCc-ccccccCcccceEEEEeeeeecC--------CCCceEEEEeCCCcEEEEECCCCe----EEEEecCc
Q 010816 173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHLN--------APCRRFVSASKDGDARIWDVSLRK----CVICLSGH 239 (500)
Q Consensus 173 ~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~s~s~dg~v~iwd~~~~~----~~~~~~~h 239 (500)
+|++||+.++.. ....+.+|...|.++.|+|.... .+...|++|+.|++|++||++.++ +...+.+|
T Consensus 124 ~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 999999987642 23346789999999999985321 124589999999999999998765 56778999
Q ss_pred cccEEEEEeCCC----CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 240 TLAVTCVKWGGD----GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 240 ~~~v~~~~~~~~----~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
...|.+++|+|+ .+|++++.|++|++||+.++.... .
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~--------~------------------------------- 244 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPW--------K------------------------------- 244 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCC--------E-------------------------------
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCcc--------c-------------------------------
Confidence 999999999997 368899999999999975421000 0
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
..+ ....+|...|.+++|+|+|++||+++.|+.|++|+..
T Consensus 245 -------------------------~~~----------~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 245 -------------------------KTL----------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp -------------------------EEE----------SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred -------------------------eee----------eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 000 0012456789999999999999999999999999975
No 114
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-32 Score=269.65 Aligned_cols=284 Identities=19% Similarity=0.219 Sum_probs=203.8
Q ss_pred eEEEEEEeecc-----------eEeEEecc----cccccccCCcccEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCcee
Q 010816 80 KVLSIVYQPQA-----------VFRIRPVN----RCSATIAGHTEAVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPM 143 (500)
Q Consensus 80 ~~~~~~~~~~~-----------~~~~~~~~----~~~~~~~gh~~~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~ 143 (500)
.|..+.|.|.. ..++|... .+...+.||.+.|++|+|+| ++++|++|+.|++|+|||++++...
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~ 200 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR 200 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee
Confidence 36677777632 23444332 22345679999999999998 6899999999999999999876543
Q ss_pred EEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc
Q 010816 144 FKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD 221 (500)
Q Consensus 144 ~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~ 221 (500)
.... .+...+.+++|+|++++|++|+.||.|++||++... . ..+.+|...|.++.|+|.. ...+++|+.|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~-~~~~~h~~~v~~v~~~p~~----~~~~~s~s~d~~ 274 (435)
T 4e54_B 201 VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-L-WNLRMHKKKVTHVALNPCC----DWFLATASVDQT 274 (435)
T ss_dssp EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-C-CCSBCCSSCEEEEEECTTC----SSEEEEEETTSB
T ss_pred EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-e-EEEecccceEEeeeecCCC----ceEEEEecCcce
Confidence 3333 344568899999999999999999999999986533 2 3578899999999998743 247889999999
Q ss_pred EEEEECCCCeEEE---EecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCce------EEEEEecC
Q 010816 222 ARIWDVSLRKCVI---CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHW------VNSLALST 291 (500)
Q Consensus 222 v~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~------v~~~~~~~ 291 (500)
|++||++..+... ...+|...|++++|++++ .|++++.|+.|++||+.++.....+..|... .....+++
T Consensus 275 v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (435)
T 4e54_B 275 VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHP 354 (435)
T ss_dssp CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECS
T ss_pred eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcC
Confidence 9999998765433 335799999999999987 6899999999999999998877766555321 11222333
Q ss_pred cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE-EECC
Q 010816 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV-YFSP 370 (500)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l-~~sp 370 (500)
.......+... .....++++..++.|++||............+|...|.++ +|+|
T Consensus 355 ~~~~~~~~~~~------------------------d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp 410 (435)
T 4e54_B 355 RYNLIVVGRYP------------------------DPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP 410 (435)
T ss_dssp SSSCEEEECCC------------------------CTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT
T ss_pred CCCEEEEEEcC------------------------CCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC
Confidence 22111111000 0011233344567899999876554434445788888887 6999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCce
Q 010816 371 DGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 371 ~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
+|++||+|+ |+.|+|||+++|+.
T Consensus 411 dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEc-CCcEEEEECCcCee
Confidence 999999876 88999999998864
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=100.00 E-value=7e-30 Score=246.85 Aligned_cols=304 Identities=13% Similarity=0.137 Sum_probs=232.7
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEE
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGI 199 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~ 199 (500)
.++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.... +..+. .+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~-~~~~~-~v~~~ 79 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-VPAGS-SPQGV 79 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-EECSS-SEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE-EECCC-Cccce
Confidence 357888999999999999998888877665 48999999999977 6777999999999998876543 33333 78899
Q ss_pred EeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCeeEEE
Q 010816 200 SWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 200 ~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
.|+| +++++ ++++.++.|++||+.+++.+..+..|. .+.+++|++++. + ++++.|+.|++||+.+++.+..
T Consensus 80 ~~sp-----dg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 153 (391)
T 1l0q_A 80 AVSP-----DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT 153 (391)
T ss_dssp EECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EECC-----CCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 9877 33445 566678999999999999888776554 678999999874 4 6788899999999999998888
Q ss_pred eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (500)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~ 356 (500)
+..+. .+..++++++. ...+++++.|+.|++||+.... ....
T Consensus 154 ~~~~~-~~~~~~~~~dg-----------------------------------~~l~~~~~~~~~v~~~d~~~~~--~~~~ 195 (391)
T 1l0q_A 154 VSVGR-SPKGIAVTPDG-----------------------------------TKVYVANFDSMSISVIDTVTNS--VIDT 195 (391)
T ss_dssp EECCS-SEEEEEECTTS-----------------------------------SEEEEEETTTTEEEEEETTTTE--EEEE
T ss_pred EecCC-CcceEEECCCC-----------------------------------CEEEEEeCCCCEEEEEECCCCe--EEEE
Confidence 77654 34777776642 1234678889999999986542 2223
Q ss_pred ecccCcEEEEEECCCCCEEEEEe---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816 357 TGHQQLVNHVYFSPDGQWVASAS---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (500)
..+...+.+++|+|+|++|++++ .|+.|++||+.+++.+..+..|.. +..+
T Consensus 196 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~------------------------- 249 (391)
T 1l0q_A 196 VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD-PAGI------------------------- 249 (391)
T ss_dssp EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSS-EEEE-------------------------
T ss_pred EecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCC-ccEE-------------------------
Confidence 34566899999999999998888 689999999999998888777653 3333
Q ss_pred eeEEcCCCCEE-EEEECCCcEEEEECCCccccccccCcccCEE---EEE------------EcCCC----------CEEE
Q 010816 434 LYSWSADSRLL-LSGSKDSTLKVWDIRTQKLKQDLPGHADEVF---AVD------------WSPDG----------EKVA 487 (500)
Q Consensus 434 ~~~~s~~~~~l-~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~---~l~------------~s~dg----------~~l~ 487 (500)
+|+|+|++| ++++.|+.|++||+.+++....+..|..... .+. |+.+. ..+.
T Consensus 250 --~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~ 327 (391)
T 1l0q_A 250 --AVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFT 327 (391)
T ss_dssp --EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEE
T ss_pred --EEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEE
Confidence 679999877 5678899999999999888777666544321 012 22211 3466
Q ss_pred EEeCCCcEEEec
Q 010816 488 SGGKDRVLKLWM 499 (500)
Q Consensus 488 s~~~D~~v~iW~ 499 (500)
..+.|.++++|+
T Consensus 328 ~~~~~~~~~~W~ 339 (391)
T 1l0q_A 328 DLSKDATEWKWD 339 (391)
T ss_dssp ECCBSCSEEEEE
T ss_pred eCCCCceEEEEE
Confidence 777899999997
No 116
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.3e-30 Score=252.85 Aligned_cols=230 Identities=32% Similarity=0.596 Sum_probs=205.8
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCC
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~ 270 (500)
+|...|.++.+ ++..+++|+.||.|++||+.+++++..+.+|...|.++.|. +..+++|+.||+|++||+.+
T Consensus 131 ~~~~~v~~~~~-------d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sg~~dg~i~vwd~~~ 202 (435)
T 1p22_A 131 ETSKGVYCLQY-------DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWDVNT 202 (435)
T ss_dssp SSCCCEEEEEC-------CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEESSS
T ss_pred CCCCcEEEEEE-------CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC-CCEEEEEcCCCeEEEEECCC
Confidence 45566777765 34689999999999999999999999999999999999994 45899999999999999999
Q ss_pred CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~ 350 (500)
++.+..+..|...|.++++++ ..+++|+.|+.|++||+....
T Consensus 203 ~~~~~~~~~h~~~v~~l~~~~--------------------------------------~~l~s~s~dg~i~vwd~~~~~ 244 (435)
T 1p22_A 203 GEMLNTLIHHCEAVLHLRFNN--------------------------------------GMMVTCSKDRSIAVWDMASPT 244 (435)
T ss_dssp CCEEEEECCCCSCEEEEECCT--------------------------------------TEEEEEETTSCEEEEECSSSS
T ss_pred CcEEEEEcCCCCcEEEEEEcC--------------------------------------CEEEEeeCCCcEEEEeCCCCC
Confidence 999999999999999988753 368999999999999987654
Q ss_pred CCc--eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeec
Q 010816 351 QPK--TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDM 428 (500)
Q Consensus 351 ~~~--~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~ 428 (500)
... ..+.+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...+.++.
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~------------------- 303 (435)
T 1p22_A 245 DITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQ------------------- 303 (435)
T ss_dssp CCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEE-------------------
T ss_pred CceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEE-------------------
Confidence 432 567789999999999 789999999999999999999999999999999988773
Q ss_pred cccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 429 SCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 429 ~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+ ++.++++|+.||.|++||+++++.+..+.+|...|.+++| ++++|++|+.||+|++|+
T Consensus 304 --------~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd 362 (435)
T 1p22_A 304 --------Y--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWD 362 (435)
T ss_dssp --------E--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred --------e--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEE
Confidence 2 5789999999999999999999999999999999999999 788999999999999997
No 117
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=7.4e-31 Score=248.77 Aligned_cols=248 Identities=12% Similarity=0.054 Sum_probs=199.4
Q ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc--ccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEE
Q 010816 147 TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP--SGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDAR 223 (500)
Q Consensus 147 ~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~ 223 (500)
.+|.+.|.+++|+|++++|++++.|+.|++||+.+++. ......+|...|.++.|.| ++. .+++|+.||.|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-----NTDLQIYVGTVQGEIL 82 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-----SSSEEEEEEETTSCEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECC-----CCCcEEEEEcCCCeEE
Confidence 47999999999999999999999999999999987761 1123458899999999987 356 799999999999
Q ss_pred EEEC-CCCeEEEEecC--ccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 224 IWDV-SLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 224 iwd~-~~~~~~~~~~~--h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
+||+ ..++. ..+.+ |...|.++.|++...+++++.|+.|++||+++... ..+
T Consensus 83 ~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~--------~~~---------------- 137 (342)
T 1yfq_A 83 KVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGD--------GVI---------------- 137 (342)
T ss_dssp EECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTT--------BCE----------------
T ss_pred EEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEccccccc--------ccc----------------
Confidence 9999 77755 66778 99999999999866899999999999999753100 000
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~ 380 (500)
. ... .+...+ .|...|.+++|+|++ +++++.
T Consensus 138 -------------------------------~---------~~~------~~~~~~-~~~~~v~~~~~~~~~--l~~~~~ 168 (342)
T 1yfq_A 138 -------------------------------A---------VKN------LNSNNT-KVKNKIFTMDTNSSR--LIVGMN 168 (342)
T ss_dssp -------------------------------E---------EEE------SCSSSS-SSCCCEEEEEECSSE--EEEEES
T ss_pred -------------------------------c---------ccC------CeeeEE-eeCCceEEEEecCCc--EEEEeC
Confidence 0 000 001111 266789999999988 999999
Q ss_pred CCcEEEEeCCC-Cce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEECCCcEEEE
Q 010816 381 DKSIKLWNGTT-GKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 381 Dg~i~lwd~~~-~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iw 456 (500)
|+.|++||+.+ +.. ......|...+.++ +|+| +++++++++.||.|++|
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i---------------------------~~~~~~~~~l~~~~~dg~i~i~ 221 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDV---------------------------ALLPKEQEGYACSSIDGRVAVE 221 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEE---------------------------EECSGGGCEEEEEETTSEEEEE
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEE---------------------------EECCCCCCEEEEEecCCcEEEE
Confidence 99999999988 543 33444566666665 6799 99999999999999999
Q ss_pred ECCCc------cccccccCccc---------CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 457 DIRTQ------KLKQDLPGHAD---------EVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 457 d~~~~------~~~~~~~~h~~---------~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
++... +....+.+|.. .|.+++|+|++++|++++.||.|++|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~ 280 (342)
T 1yfq_A 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred EEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence 99876 66677777755 9999999999999999999999999973
No 118
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=3.3e-31 Score=255.98 Aligned_cols=262 Identities=17% Similarity=0.147 Sum_probs=178.3
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-----EEecCCCCCEEEEEEcC--------CCCEEEEEe
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSA--------DGKHLVSGS 169 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~--------~~~~l~s~~ 169 (500)
...+|...+....+++++.+||+|+.|++|+|||..++... ..+.+|.+.|.+|+|+| |+++||||+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s 163 (393)
T 4gq1_A 84 SENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG 163 (393)
T ss_dssp ECC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE
T ss_pred cccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE
Confidence 34556667777777888899999999999999999877543 23579999999999997 789999999
Q ss_pred CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE--------------
Q 010816 170 KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-------------- 235 (500)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-------------- 235 (500)
.|++|++||+.++.... .+.+|...+.+++|+|.. ..++++|+.|++|++||+++++....
T Consensus 164 ~D~tv~~Wd~~~~~~~~-~~~~~~~~v~~v~~~p~~----~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s 238 (393)
T 4gq1_A 164 DDCTLIIWRLTDEGPIL-AGYPLSSPGISVQFRPSN----PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLT 238 (393)
T ss_dssp TTSEEEEEEEETTEEEE-EEEECSSCEEEEEEETTE----EEEEEEEETTSEEEEEETTCCC----------CSCCCSEE
T ss_pred CCCeEEEEECCCCceee-eecCCCCCcEEEEECCCC----CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEe
Confidence 99999999998776543 345678889999999843 24799999999999999987754322
Q ss_pred -----------ecCccccEEEEEeC-CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 236 -----------LSGHTLAVTCVKWG-GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 236 -----------~~~h~~~v~~~~~~-~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
..+|...+.++.|. +++ .|++++.|+++++||+..++....+..+...+..+.+.++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 309 (393)
T 4gq1_A 239 LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNV--------- 309 (393)
T ss_dssp EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSE---------
T ss_pred cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcccc---------
Confidence 23567778888886 554 68899999999999998877666555544433333322211
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC--CCCEEEEEeC
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP--DGQWVASASF 380 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp--~g~~lasgs~ 380 (500)
.....+...+ ...|+| ++.++++|+.
T Consensus 310 ---------------------------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~sgs~ 337 (393)
T 4gq1_A 310 ---------------------------------------------------QGISLFPSLL-GACPHPRYMDYFATAHSQ 337 (393)
T ss_dssp ---------------------------------------------------EEECSSCCSS-CCEECSSCTTEEEEEETT
T ss_pred ---------------------------------------------------ccccccCcce-eEEEccCCCCEEEEEECC
Confidence 0011111112 223443 4567788999
Q ss_pred CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
||.|++||..+++.+..+.+|..+|.++ +|+|||++||+++.|| +.+|.+
T Consensus 338 Dg~V~lwd~~~~~~~~~~~~~~~~V~sv---------------------------afspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 338 HGLIQLINTYEKDSNSIPIQLGMPIVDF---------------------------CWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TTEEEEEETTCTTCCEEEEECSSCEEEE---------------------------EECTTSSEEEEEESSE-EEEEEE
T ss_pred CCEEEEEECCCCcEEEEecCCCCcEEEE---------------------------EEcCCCCEEEEEeCCC-eEEEEE
Confidence 9999999999999988888898898887 6799999999999776 666654
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=245.66 Aligned_cols=225 Identities=12% Similarity=0.075 Sum_probs=178.9
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC---------CCeeEEEee-
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT---------QGKLIRELK- 278 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~---------~~~~~~~~~- 278 (500)
+...+++|+.||.|++||+.+++.+..+. ...|.++.|+++ +++++.|++|++|+.. +++.++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~--~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 122 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA--IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEV 122 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS--EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc--eEEecCCCeEEEEEccCceEEeecCCcceeEEeec
Confidence 34579999999999999999998877665 456777778877 9999999999999765 444444443
Q ss_pred cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec
Q 010816 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG 358 (500)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~ 358 (500)
.|...|.+++++|.. .+..+++++.|++|++||+............
T Consensus 123 ~~~~~v~~~~~~~~~----------------------------------~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 168 (343)
T 3lrv_A 123 DSANEIIYMYGHNEV----------------------------------NTEYFIWADNRGTIGFQSYEDDSQYIVHSAK 168 (343)
T ss_dssp CCSSCEEEEECCC-------------------------------------CCEEEEEETTCCEEEEESSSSCEEEEECCC
T ss_pred CCCCCEEEEEcCCCC----------------------------------CCCEEEEEeCCCcEEEEECCCCcEEEEEecC
Confidence 555678888877610 1457999999999999998765442222234
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceE-EEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFV-AVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~-~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
|...+.+++|+|+|.+||+|+.||.|++||+++++.+ ..+.+ |.++|.++ +
T Consensus 169 ~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l---------------------------~ 221 (343)
T 3lrv_A 169 SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV---------------------------K 221 (343)
T ss_dssp SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEE---------------------------E
T ss_pred CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEE---------------------------E
Confidence 5667999999999999999999999999999999987 88888 99999888 5
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCccccccccC---cccCEE--EEEEcCCCCEEEEEeC-CCcEEEec
Q 010816 437 WSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---HADEVF--AVDWSPDGEKVASGGK-DRVLKLWM 499 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---h~~~V~--~l~~s~dg~~l~s~~~-D~~v~iW~ 499 (500)
|+|+|.+|++++ |+.|++||+++++....+.. |...+. +++|+|+|++|++++. |+.|++|+
T Consensus 222 fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 222 FADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 699999999999 55999999999877655543 433443 5999999999999998 99999995
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=8.2e-29 Score=242.76 Aligned_cols=278 Identities=15% Similarity=0.135 Sum_probs=221.1
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-----EecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-----KCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
..+.+++|+|++.++++++.|+.|++||+.+++... .+.+|...|.+++|++++.++++++.|+.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 345589999977888888889999999999888765 345889999999999999999999999999999998876
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEe---
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS--- 258 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~--- 258 (500)
... .+..|...+.++.|+|. +..+ ++++.|+.|++||+++++.+..+..+ ..+.+++|++++ .+++++
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~ 275 (433)
T 3bws_A 203 YKA-TVDLTGKWSKILLYDPI-----RDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSA 275 (433)
T ss_dssp EEE-EEECSSSSEEEEEEETT-----TTEEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEES
T ss_pred EEE-EEcCCCCCeeEEEEcCC-----CCEEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCC
Confidence 543 34577888999999873 3445 56668999999999999988877665 458999999987 577776
Q ss_pred -----CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 259 -----QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 259 -----~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
.|+.|++||+.+++.+..+. +...+..++++++. ...++
T Consensus 276 ~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g-----------------------------------~~l~~ 319 (433)
T 3bws_A 276 SNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTE-----------------------------------NKIYV 319 (433)
T ss_dssp CTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSST-----------------------------------TEEEE
T ss_pred CccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCC-----------------------------------CEEEE
Confidence 48899999999988776553 33456677776642 23467
Q ss_pred EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC---------------CCcEEEEeCCCCceEEEE
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF---------------DKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~---------------Dg~i~lwd~~~~~~~~~~ 398 (500)
+++.|+.|++||..... .... ..+...+.+++|+|+|++|++++. ||.|++||..+++.+..+
T Consensus 320 ~~~~~~~v~v~d~~~~~-~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~ 397 (433)
T 3bws_A 320 SDMCCSKIEVYDLKEKK-VQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW 397 (433)
T ss_dssp EETTTTEEEEEETTTTE-EEEE-EECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE
T ss_pred EecCCCEEEEEECCCCc-EEEE-ecCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe
Confidence 77899999999986432 2222 346778999999999999988876 579999999999988877
Q ss_pred eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECC
Q 010816 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIR 459 (500)
Q Consensus 399 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~ 459 (500)
..+. .+..+ +|+|+|++|++++. |+.|++|++.
T Consensus 398 ~~~~-~~~~~---------------------------~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 398 EAGN-QPTGL---------------------------DVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECSS-SEEEE---------------------------EECTTSCEEEEEETTTTEEEEEEET
T ss_pred cCCC-CCceE---------------------------EEcCCCCEEEEEECCCCeEEEEEec
Confidence 7643 34444 67999999998875 9999999975
No 121
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.3e-29 Score=238.55 Aligned_cols=262 Identities=18% Similarity=0.225 Sum_probs=187.4
Q ss_pred ccccccCCcccEEEEEEcC--CCCeEEEEeCCCcEEEEeCCCC---------ceeEEecCCCCCEEEEEEcCC--CCEEE
Q 010816 100 CSATIAGHTEAVLSVAFSP--DGRQLASGSGDTTVRLWDLNTQ---------TPMFKCTGHKNWVLCIAWSAD--GKHLV 166 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp--~~~~lat~~~d~~i~iwd~~~~---------~~~~~~~~h~~~v~~v~~s~~--~~~l~ 166 (500)
+...+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++ .++..+.+|...|.+++|+|+ +++|+
T Consensus 49 ~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 128 (351)
T 3f3f_A 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLA 128 (351)
T ss_dssp EEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEE
T ss_pred ecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEE
Confidence 4456689999999999999 6999999999999999999876 456778899999999999999 99999
Q ss_pred EEeCCCeEEEEeCCCCCccccc------------ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE--
Q 010816 167 SGSKAGELQCWDPQTGKPSGNP------------LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-- 232 (500)
Q Consensus 167 s~~~d~~i~~wd~~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-- 232 (500)
+++.|+.|++||+.+++..... ..+|...+.++.|.|... ....+++++.|+.+.+|+...++.
T Consensus 129 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (351)
T 3f3f_A 129 CLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRF--SPEKLAVSALEQAIIYQRGKDGKLHV 206 (351)
T ss_dssp EEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSS--SCCEEEEEETTEEEEEEECTTSCEEE
T ss_pred EecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCC--CCcEEEEecCCCcEEEEccCCCceee
Confidence 9999999999999887654321 136778899999988532 246899999999998888877764
Q ss_pred EEEecCccccEEEEEeCCCC-----eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCC
Q 010816 233 VICLSGHTLAVTCVKWGGDG-----VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQY 307 (500)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~-----~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 307 (500)
+..+.+|...|++++|++++ .|++|+.||.|++||++.+...................+....
T Consensus 207 ~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 274 (351)
T 3f3f_A 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDM------------ 274 (351)
T ss_dssp EEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------------------
T ss_pred eeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccccc------------
Confidence 67788999999999999985 7999999999999998765433222111111111110000000
Q ss_pred CCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 308 SSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
.......+.....+.+|+... ......+.+|...|++++|+|++++|++|+.||.|++|
T Consensus 275 --------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 275 --------------------DAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp ------------------------------------CCSEE-EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred --------------------ccccccccccceeeeeccccc-ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 000011222333344444221 12344567899999999999999999999999999999
Q ss_pred eCCCCceEE
Q 010816 388 NGTTGKFVA 396 (500)
Q Consensus 388 d~~~~~~~~ 396 (500)
|+.+++.+.
T Consensus 334 ~~~~~~~~~ 342 (351)
T 3f3f_A 334 KATYSNEFK 342 (351)
T ss_dssp EECTTSCEE
T ss_pred ecCcCcchh
Confidence 999876544
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=4.9e-29 Score=227.00 Aligned_cols=259 Identities=16% Similarity=0.117 Sum_probs=182.8
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC----CCEEEEEeCCCeEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKHLVSGSKAGELQ 175 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~----~~~l~s~~~d~~i~ 175 (500)
+..+..+|..+|..+.+.||...|+... .-.-+.+.|.+++|+|| +..+++++.+ ++
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~ 138 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVA-----------------LGNLEIREIRALFCSSDDESEKQVLLKSGNI--KA 138 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEE-----------------ECSSSEEEEEEECC------CCEEEEEEEEE--EE
T ss_pred eeEEEeccCceeEEEEEcCcccceeeee-----------------eccccccceEEEEECCCccccccEEEeCCCe--EE
Confidence 4677889999999999999865443321 01124567999999999 9999998844 77
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECC-CCeEEEEecCccccEEEEEeCC-
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVS-LRKCVICLSGHTLAVTCVKWGG- 250 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~-~~~~~~~~~~h~~~v~~~~~~~- 250 (500)
+|++.++ +++..+ .|+.|++|++. .++.+..+.+|...++.++|++
T Consensus 139 v~~l~~g-----------------------------~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 139 VLGLTKR-----------------------------RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEEETTT-----------------------------EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred EEecCCC-----------------------------cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 8876433 233333 59999999994 5888888888988888888876
Q ss_pred --CC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCc---eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 251 --DG-VIYTGSQDCTIKVWETTQGKLIRELKGHGH---WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 251 --~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++ .|++|+.|++|++||+.+|+.++++.+|.. .+.+++++|+..+........
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~--------------------- 248 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPC--------------------- 248 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------------------
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCC---------------------
Confidence 33 688999999999999999999999986543 466668888764432211100
Q ss_pred cCCCCcEEEEeeCCCeEEEEcCCCCCCCcee----eecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 325 KGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~----~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
....+++|+.|+++++||+......... ..+|...+.+..++ +.++|+|+.|++|+|||+.+|+++.++++
T Consensus 249 ---~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~g 323 (356)
T 2w18_A 249 ---AKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPP 323 (356)
T ss_dssp ------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECC
T ss_pred ---CcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecC
Confidence 0114689999999999998654322111 13665555444443 78999999999999999999999999999
Q ss_pred CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEEC
Q 010816 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~ 458 (500)
|...+.. .++|+|||++|++|+.|++|||||+
T Consensus 324 H~~~vvs--------------------------~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 324 VSDQHWS--------------------------FVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp C--CCCC--------------------------EEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCeEE--------------------------EEEECCCCCEEEEEECCCcEEEecC
Confidence 9765432 1268999999999999999999985
No 123
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=2.5e-28 Score=233.46 Aligned_cols=251 Identities=18% Similarity=0.289 Sum_probs=191.7
Q ss_pred EeCCCCceeEEecCCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEeCCC-CCcccccccCcccceEEEEeeeeecCCCC
Q 010816 135 WDLNTQTPMFKCTGHKNWVLCIAWSAD---GKHLVSGSKAGELQCWDPQT-GKPSGNPLSGHKKWITGISWEPVHLNAPC 210 (500)
Q Consensus 135 wd~~~~~~~~~~~~h~~~v~~v~~s~~---~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 210 (500)
|+......+..+.+|.+.|.+++|+|+ |++|++|+.||.|++||+.+ +......+.+|...|.++.|+| ++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-----~~ 98 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSD-----DG 98 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECT-----TS
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECc-----CC
Confidence 444555666677899999999999999 69999999999999999987 5544456788999999999987 45
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe--CCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW--GGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~ 287 (500)
..+++++.||.|++||+++++++. +.+|...|.++.| ++++ .|++++.|+.|++||+++++.+..+..+.
T Consensus 99 ~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~------ 171 (368)
T 3mmy_A 99 SKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE------ 171 (368)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS------
T ss_pred CEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC------
Confidence 689999999999999999988776 5679999999999 7776 58899999999999998876554433221
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~ 367 (500)
.+.++.
T Consensus 172 --------------------------------------------------------------------------~~~~~~ 177 (368)
T 3mmy_A 172 --------------------------------------------------------------------------RCYCAD 177 (368)
T ss_dssp --------------------------------------------------------------------------CEEEEE
T ss_pred --------------------------------------------------------------------------CceEEE
Confidence 123333
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceEEEE-e-CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC---
Q 010816 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVF-R-GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR--- 442 (500)
Q Consensus 368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--- 442 (500)
+. +..+++++.|+.+++|++......... . .+......+ ++.++..
T Consensus 178 ~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~ 228 (368)
T 3mmy_A 178 VI--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCV---------------------------AIFKDKQNKP 228 (368)
T ss_dssp EE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEE---------------------------EEEECTTSCE
T ss_pred ec--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceE---------------------------EEcccCCCCC
Confidence 33 346777788888888888765432211 1 112222222 1222222
Q ss_pred -EEEEEECCCcEEEEECCCc---cccccccCccc------------CEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 443 -LLLSGSKDSTLKVWDIRTQ---KLKQDLPGHAD------------EVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 443 -~l~s~s~d~~v~iwd~~~~---~~~~~~~~h~~------------~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
.+++++.|+.|++||++.. +....+.+|.. .|.+++|+|++++|++++.||.|++|+.
T Consensus 229 ~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~ 302 (368)
T 3mmy_A 229 TGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDK 302 (368)
T ss_dssp EEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred CeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEEC
Confidence 3999999999999999887 44566677765 7999999999999999999999999973
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=6.9e-27 Score=225.82 Aligned_cols=328 Identities=18% Similarity=0.205 Sum_probs=230.6
Q ss_pred ccccCCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDP 179 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~ 179 (500)
..+.+|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+. .+.+++|+|++++|+ +++.|+.|++||+
T Consensus 26 ~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 26 ATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEEC
Confidence 3445554 48999999999987 677799999999999998887776555 899999999999875 4556799999999
Q ss_pred CCCCcccccccCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eE-EE
Q 010816 180 QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VI-YT 256 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l-~t 256 (500)
.+++.... +. +...+.++.|+| +++.+ ++++.|+.|++||+.+++.+..+..|. .+.++.|++++ .+ ++
T Consensus 104 ~~~~~~~~-~~-~~~~~~~~~~s~-----dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 104 TSNTVAGT-VK-TGKSPLGLALSP-----DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp TTTEEEEE-EE-CSSSEEEEEECT-----TSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEEE
T ss_pred CCCeEEEE-Ee-CCCCcceEEECC-----CCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-CcceEEECCCCCEEEEE
Confidence 98865432 22 334578888876 33445 788889999999999999888877664 45899999987 34 57
Q ss_pred EeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee
Q 010816 257 GSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS 336 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s 336 (500)
++.|+.|++||+++++....+.. ...+.+++++++ +..+++++
T Consensus 176 ~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~~~~------------------------------------g~~l~~~~ 218 (391)
T 1l0q_A 176 NFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPE------------------------------------GTKAYVTN 218 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTT------------------------------------SSEEEEEE
T ss_pred eCCCCEEEEEECCCCeEEEEEec-CCCccceEECCC------------------------------------CCEEEEEe
Confidence 78899999999999988777654 446777777764 24566665
Q ss_pred ---CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeee
Q 010816 337 ---DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFEL 412 (500)
Q Consensus 337 ---~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~ 412 (500)
.++.|++||+.... ....+..|. .+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..|..+.....+-
T Consensus 219 ~~~~~~~v~~~d~~~~~-~~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~- 295 (391)
T 1l0q_A 219 VDKYFNTVSMIDTGTNK-ITARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFI- 295 (391)
T ss_dssp ECSSCCEEEEEETTTTE-EEEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCE-
T ss_pred cCcCCCcEEEEECCCCe-EEEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceee-
Confidence 78999999986543 333444444 57899999999877 677889999999999999999998887654211100
Q ss_pred eeeecCCCC-ceeeeeccccceeeEEcCCC--CEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEE
Q 010816 413 IYCFRYPSN-FYCVVDMSCCMSLYSWSADS--RLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~~~~~s~~~--~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~ 489 (500)
.. .+.. .....+...... -.+.|.. ..+...+.|..+++||...+... .+..+ ...|+++|.+.++.
T Consensus 296 -~~--~~~~~~~~~a~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~----~~~~~--~~~~~~~g~y~~~~ 365 (391)
T 1l0q_A 296 -GS--IPVQPVYPSADFKSNIT-SGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS----KKQNP--THTYSETGIYTVRL 365 (391)
T ss_dssp -EE--CSSCCCCCBCCEEESCC-SSEEETTCCEEEEECCBSCSEEEEECSSSCEE----CSSSC--EECCSSCEEEEEEE
T ss_pred -ec--ccccccccccccccccc-cccccccceEEEEeCCCCceEEEEECCCCccc----CcCCC--eEEeCCCceEEEEE
Confidence 00 0000 000000000000 0011112 34666777899999999776542 12222 35688888887654
No 125
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.5e-28 Score=238.06 Aligned_cols=247 Identities=15% Similarity=0.124 Sum_probs=194.5
Q ss_pred ccCCcccEEEEEEcCCCCeE-EEEeCCCcEEEEeCC--CCceeEEec--CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 104 IAGHTEAVLSVAFSPDGRQL-ASGSGDTTVRLWDLN--TQTPMFKCT--GHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~l-at~~~d~~i~iwd~~--~~~~~~~~~--~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
..+|.+.|.+++|+|++++| |+|+.|++|+|||+. ++..+..+. .|...|.+++|+|++++|++|+.|+.|++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 46789999999999999996 899999999999998 777776665 6778999999999999999999999999999
Q ss_pred CCCCCccc---ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC-e
Q 010816 179 PQTGKPSG---NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-V 253 (500)
Q Consensus 179 ~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-~ 253 (500)
+.+++... ..+.+|...|.++.|+|.. ..+..+++|+.|+.|++||+++++++.. +.+|...|.+++|+ ++ .
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~--~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~ 254 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYL 254 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECT--TSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCC--CCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCE
Confidence 98776432 2567899999999999841 0146899999999999999999988877 56999999999999 65 7
Q ss_pred EEEEeCCCeEEEEeCCCCeeEEEeecCC-------------------------ceEEEEEecCcceeeeccccCCCCCCC
Q 010816 254 IYTGSQDCTIKVWETTQGKLIRELKGHG-------------------------HWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 254 l~t~~~dg~i~lwd~~~~~~~~~~~~~~-------------------------~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
|++++.|+.|++||+.+++.+..+..+. ..+..++++++
T Consensus 255 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~---------------- 318 (450)
T 2vdu_B 255 LLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN---------------- 318 (450)
T ss_dssp EEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS----------------
T ss_pred EEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC----------------
Confidence 8999999999999999998887775321 22333333332
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcC--CCCC--CCceeeecccCcEEEEEECCCCCEEEEEeC---
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEP--AVSK--QPKTRMTGHQQLVNHVYFSPDGQWVASASF--- 380 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~--~~~~--~~~~~~~~h~~~v~~l~~sp~g~~lasgs~--- 380 (500)
+..+++++ .|+.|++|++ .... .....+.+| ..|.+++|+|++.++++++.
T Consensus 319 --------------------~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~ 377 (450)
T 2vdu_B 319 --------------------LPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESS 377 (450)
T ss_dssp --------------------SSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCC
T ss_pred --------------------CCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCC
Confidence 35677777 8999999998 3221 233445666 78999999996555554443
Q ss_pred ---CCcEEEEeCC
Q 010816 381 ---DKSIKLWNGT 390 (500)
Q Consensus 381 ---Dg~i~lwd~~ 390 (500)
++.|++|.+.
T Consensus 378 ~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 378 GVQKNFAKFIEYN 390 (450)
T ss_dssp SSCCCSEEEEEEE
T ss_pred CCCCcceEEEEEE
Confidence 5568888654
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=9.9e-28 Score=240.09 Aligned_cols=315 Identities=13% Similarity=0.072 Sum_probs=234.9
Q ss_pred EEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeC--CCCCcccccccCc
Q 010816 115 AFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDP--QTGKPSGNPLSGH 192 (500)
Q Consensus 115 ~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~ 192 (500)
+|+|++.++++++.|++|.+||..+++.+..+..+.. +.+++|+|||++|++++.|++|.+||+ .+++.... +. +
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~-i~-~ 220 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE-IK-I 220 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE-EE-C
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE-Ee-c
Confidence 3889999999999999999999999998888873333 899999999999999999999999999 77665432 22 2
Q ss_pred ccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCc----------c-ccEEEEEeCCCC--eEEEEe
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGH----------T-LAVTCVKWGGDG--VIYTGS 258 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h----------~-~~v~~~~~~~~~--~l~t~~ 258 (500)
.....++.|+|.. ..+++++++++ .+++|.+||..+++++..+..+ . ..+.++.+++++ .+++..
T Consensus 221 g~~p~~va~sp~~-~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~ 299 (543)
T 1nir_A 221 GIEARSVESSKFK-GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK 299 (543)
T ss_dssp CSEEEEEEECCST-TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET
T ss_pred CCCcceEEeCCCc-CCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC
Confidence 3345677776510 00456677776 5899999999999988877642 2 268889999865 466778
Q ss_pred CCCeEEEEeCCCCeeEE--EeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEe
Q 010816 259 QDCTIKVWETTQGKLIR--ELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSG 335 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~ 335 (500)
.++.|.+||..+++.+. .+ .+...+..++++|+ +.+ ++++
T Consensus 300 ~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spd------------------------------------g~~l~va~ 342 (543)
T 1nir_A 300 ETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSS------------------------------------HRYFMTAA 342 (543)
T ss_dssp TTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTT------------------------------------SCEEEEEE
T ss_pred CCCeEEEEEecCCCcceeEEe-ccCcCccCceECCC------------------------------------CCEEEEEe
Confidence 89999999998765443 22 23444555666554 233 4455
Q ss_pred eCCCeEEEEcCCCCCCCceeee----cccCcEEEEEECCC-CCEEEEEe-CCCcEEEEeCCC-------CceEEEEeCCc
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPD-GQWVASAS-FDKSIKLWNGTT-------GKFVAVFRGHV 402 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~-g~~lasgs-~Dg~i~lwd~~~-------~~~~~~~~~h~ 402 (500)
..+++|.+||....+. ...+. .|......+ ++|+ |..++++. .|++|.+||..+ ++++.++++|.
T Consensus 343 ~~~~~v~v~D~~tg~l-~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g 420 (543)
T 1nir_A 343 NNSNKVAVIDSKDRRL-SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG 420 (543)
T ss_dssp GGGTEEEEEETTTTEE-EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC
T ss_pred cCCCeEEEEECCCCeE-EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC
Confidence 6789999999875432 22232 255443333 5777 67777776 589999999998 88999999887
Q ss_pred ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-------CCCcEEEEECCCcccc-ccc-------
Q 010816 403 GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-------KDSTLKVWDIRTQKLK-QDL------- 467 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-------~d~~v~iwd~~~~~~~-~~~------- 467 (500)
+.+..+ +++|+|++|++++ .+++|.+||+.+++.. ..+
T Consensus 421 ~~~~~v---------------------------~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~ 473 (543)
T 1nir_A 421 GGSLFI---------------------------KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWAD 473 (543)
T ss_dssp SCCCCE---------------------------ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHC
T ss_pred CCceEE---------------------------EcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcc
Confidence 654444 4699999999987 2779999999988765 332
Q ss_pred -cCcccCEEEEEEcCCCCEEEEEe-----CCCcEEEec
Q 010816 468 -PGHADEVFAVDWSPDGEKVASGG-----KDRVLKLWM 499 (500)
Q Consensus 468 -~~h~~~V~~l~~s~dg~~l~s~~-----~D~~v~iW~ 499 (500)
..+...+..+.|+|||+.|..+. .|+.|.||+
T Consensus 474 ~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 474 LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 45677899999999999998662 479999997
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.96 E-value=1.9e-27 Score=230.95 Aligned_cols=299 Identities=16% Similarity=0.157 Sum_probs=227.8
Q ss_pred ccEEEEEEcCCCC-eEEEEe----CCC----cEEEEeC--CCCcee--EEecCCCCCEEEEEEcC--------------C
Q 010816 109 EAVLSVAFSPDGR-QLASGS----GDT----TVRLWDL--NTQTPM--FKCTGHKNWVLCIAWSA--------------D 161 (500)
Q Consensus 109 ~~V~~~~~sp~~~-~lat~~----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~v~~s~--------------~ 161 (500)
..|...+|.+.|. ++++|+ .|| +++|||+ .+++++ ..+.+|...+..+++++ .
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 4566677888775 555776 567 8999999 888877 44788888888777764 2
Q ss_pred CCEEEEEeCC------CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC---cEEEEECCCCeE
Q 010816 162 GKHLVSGSKA------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKC 232 (500)
Q Consensus 162 ~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~~ 232 (500)
+..++.++.+ +.|++||+..+.. ..+.+|...+.+++|+| +++++++++.++ .|++||+.++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~--~~l~~~~~~v~~~~~Sp-----dg~~la~~s~~~~~~~i~~~d~~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ--FVVHRSPQPLMSPAWSP-----DGSKLAYVTFESGRSALVIQTLANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC--EEEEEESSCEEEEEECT-----TSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC--EEEeCCCCcceeeEEcC-----CCCEEEEEEecCCCcEEEEEECCCCcE
Confidence 5677766654 7999999975432 34667888999999987 556899998875 999999998887
Q ss_pred EEEecCccccEEEEEeCCCCe-EE-EEeCCCe--EEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 233 VICLSGHTLAVTCVKWGGDGV-IY-TGSQDCT--IKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 233 ~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~--i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
. .+..|...+.+++|+||+. |+ +++.|+. |++||+.+++. ..+..+...+.+++++|+.
T Consensus 216 ~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg--------------- 278 (415)
T 2hqs_A 216 R-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDS--------------- 278 (415)
T ss_dssp E-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTS---------------
T ss_pred E-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCC---------------
Confidence 5 4667888899999999984 55 5666654 99999988765 5666777788888888763
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CC--eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC---C
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSD-DF--TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD---K 382 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~--~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D---g 382 (500)
..++.++. ++ .|++||+.... ...+..+...+.+++|+|||++|++++.+ .
T Consensus 279 ---------------------~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~ 335 (415)
T 2hqs_A 279 ---------------------QNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQ 335 (415)
T ss_dssp ---------------------SEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSSCE
T ss_pred ---------------------CEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEEECcCCce
Confidence 45666665 45 67777876443 33455667789999999999999988865 5
Q ss_pred cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC---cEEEEECC
Q 010816 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS---TLKVWDIR 459 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~---~v~iwd~~ 459 (500)
.|++||+.+++.. .+..|. .+..+ +|+|+|++|++++.|+ .|++||+.
T Consensus 336 ~i~~~d~~~~~~~-~l~~~~-~~~~~---------------------------~~spdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 336 HIAKQDLATGGVQ-VLSSTF-LDETP---------------------------SLAPNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEETTTCCEE-ECCCSS-SCEEE---------------------------EECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEECCCCCEE-EecCCC-CcCCe---------------------------EEcCCCCEEEEEEcCCCccEEEEEECC
Confidence 8999999988764 344332 33333 7899999999998877 79999987
Q ss_pred CccccccccCcccCEEEEEEcCCCC
Q 010816 460 TQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 460 ~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
. +....+.+|.+.|.+++|+|...
T Consensus 387 g-~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 387 G-RFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp S-CCEEECCCSSSEEEEEEECCCCC
T ss_pred C-CcEEEeeCCCCCCcCCccccccc
Confidence 4 45667889999999999999754
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.7e-26 Score=242.16 Aligned_cols=317 Identities=14% Similarity=0.152 Sum_probs=231.2
Q ss_pred cccEEEEEEcCCCCeEEEEeC-CC-----cEEEEeCCCCceeEEecCCCC------------------------CEEEEE
Q 010816 108 TEAVLSVAFSPDGRQLASGSG-DT-----TVRLWDLNTQTPMFKCTGHKN------------------------WVLCIA 157 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~-d~-----~i~iwd~~~~~~~~~~~~h~~------------------------~v~~v~ 157 (500)
...|.+++|+|||++||+++. |+ +|++||+.+++....+..+.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 456899999999999999998 88 899999999877655554432 378999
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCCC---CcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE
Q 010816 158 WSADGKHLVSGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI 234 (500)
Q Consensus 158 ~s~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~ 234 (500)
|+|||++|++++. +.|.+||+.++ .. ..+..|...+..+.|+| ++++++.++ ++.|++||+.+++...
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SP-----DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSP-----KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECT-----TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCC-----CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 9999999999886 99999999887 43 24566777889999987 556777776 5699999999887766
Q ss_pred EecCcccc----------------EEEEEeCCCCe-EEEEeCCC---------------------------------eEE
Q 010816 235 CLSGHTLA----------------VTCVKWGGDGV-IYTGSQDC---------------------------------TIK 264 (500)
Q Consensus 235 ~~~~h~~~----------------v~~~~~~~~~~-l~t~~~dg---------------------------------~i~ 264 (500)
....+... +.++.|++||. |++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 36789999984 77776665 788
Q ss_pred EEeCCC-CeeEEEee--cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-----
Q 010816 265 VWETTQ-GKLIRELK--GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS----- 336 (500)
Q Consensus 265 lwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s----- 336 (500)
+||+.+ ++...... .+...+..+++ ++. ..++.++
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg------------------------------------~~l~~~~~~~~~ 309 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDP------------------------------------QHLSFQRQSRDQ 309 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EET------------------------------------TEEEEEEEETTS
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCC------------------------------------CEEEEEEecccC
Confidence 999988 77654433 36677888888 763 3444333
Q ss_pred CCCeEEEEcCCCCCCCceeeecccC----cEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEee
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQQ----LVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~~----~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~ 411 (500)
.+..|++||+..... ...+..+.. .+..++|+|||+++++++.||.++||.+. +++ ...+..|...+..+
T Consensus 310 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~--- 384 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQ-RVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL--- 384 (741)
T ss_dssp SEEEEEEEETTTCCE-EEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEE---
T ss_pred CeEEEEEEECCCCce-EEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeE---
Confidence 356899999865432 223333332 34688999999999999999988888665 344 66666666655443
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCC--cEEEEECCC-ccccccccCcccCEEEEEEcCCCCEEE
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDS--TLKVWDIRT-QKLKQDLPGHADEVFAVDWSPDGEKVA 487 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~--~v~iwd~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~ 487 (500)
.+|+|+|+.|+.. +.|+ .++||++.. ++....+.+ ...+..++|||||++|+
T Consensus 385 -----------------------~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~ 440 (741)
T 2ecf_A 385 -----------------------LAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYV 440 (741)
T ss_dssp -----------------------EEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEE
T ss_pred -----------------------eEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEE
Confidence 1479999877654 4455 899999864 444555655 56789999999999988
Q ss_pred EEeCC----CcEEEec
Q 010816 488 SGGKD----RVLKLWM 499 (500)
Q Consensus 488 s~~~D----~~v~iW~ 499 (500)
....+ ..+++|+
T Consensus 441 ~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 441 DSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEecCCCCCCeEEEEE
Confidence 76443 3455553
No 129
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.96 E-value=1.5e-26 Score=250.73 Aligned_cols=351 Identities=14% Similarity=0.139 Sum_probs=233.7
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCC------CcEEEEeCCCCceeEEecCCCCCE-------EEEEEcCCCCEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGD------TTVRLWDLNTQTPMFKCTGHKNWV-------LCIAWSADGKHLV 166 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d------~~i~iwd~~~~~~~~~~~~h~~~v-------~~v~~s~~~~~l~ 166 (500)
....+.+|.+.|.+++|||||++||+++.+ ..|++||+.++. ...+..|...+ .+++|+|||++++
T Consensus 44 ~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~ 122 (1045)
T 1k32_A 44 STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLII 122 (1045)
T ss_dssp CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred cEEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEE
Confidence 345677899999999999999999988643 479999998876 56778898888 9999999999777
Q ss_pred EEeCC------CeEEEEeCCCCCcccc------------------------------------------------cccCc
Q 010816 167 SGSKA------GELQCWDPQTGKPSGN------------------------------------------------PLSGH 192 (500)
Q Consensus 167 s~~~d------~~i~~wd~~~~~~~~~------------------------------------------------~~~~~ 192 (500)
+++.+ ..|.+|++.+++.... .+.+|
T Consensus 123 ~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~ 202 (1045)
T 1k32_A 123 STDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM 202 (1045)
T ss_dssp EECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC
T ss_pred EECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC
Confidence 77754 3577788765542110 01123
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCC
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~ 270 (500)
...+.++.|.+ + ..+++++.|+.++||.+.. +.....+..|. .+.+..|+++|. |+.+ .++.|.+||+..
T Consensus 203 ~~~v~~~~~s~-----d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 203 STHVSSPVIVG-----H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp SSCCEEEEEET-----T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred CCcccceEEeC-----C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 33444455543 2 3566777888889997653 33334444444 344567888775 4444 588888888743
Q ss_pred CeeEEEeecC-------------CceEEE--------EEecCcceeeeccccCCCCC---CCCHHHHHHHHHHhhhhh-c
Q 010816 271 GKLIRELKGH-------------GHWVNS--------LALSTEYALRTGAFDHTGKQ---YSSPEEMKKAALERYNKI-K 325 (500)
Q Consensus 271 ~~~~~~~~~~-------------~~~v~~--------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~ 325 (500)
.+ +..+..+ ...-.. +++.....+.. ++..... ..... -.....+ .
T Consensus 275 ~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~--~~~~~~~~~~~~~~~------~~~~~~~~~ 345 (1045)
T 1k32_A 275 EK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFI--QDVSGTYVLKVPEPL------RIRYVRRGG 345 (1045)
T ss_dssp CC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEE--ECTTSSBEEECSCCS------CEEEEEECS
T ss_pred eE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEE--EcCCCCceEEccCCC------cceEEeeeE
Confidence 32 2233221 011111 11111111100 0000000 00000 0000000 1
Q ss_pred CCCCcEEEEeeCCCeEE-EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCccc
Q 010816 326 GNAPERLVSGSDDFTMF-LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 326 ~~~~~~~~s~s~d~~v~-~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
. .+..++.++.+..+. +|+..... ...+.+|...+..++|||||++||+++.|+.|++||+.+++....+.+|.+.
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~ 422 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGK--AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM 422 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCC--EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred c-CCCeEEEEECCCceEEEEECCCCC--ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCC
Confidence 1 235677777788888 88875432 2334478888999999999999999999999999999999988877777776
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC----------cEEEEECCCccccccccCcccCE
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS----------TLKVWDIRTQKLKQDLPGHADEV 474 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~----------~v~iwd~~~~~~~~~~~~h~~~V 474 (500)
+..+ +|||||++|++++.++ .|++||+.+++ ...+..|...+
T Consensus 423 v~~~---------------------------~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~ 474 (1045)
T 1k32_A 423 ITDF---------------------------TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHD 474 (1045)
T ss_dssp CCCE---------------------------EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBE
T ss_pred ccce---------------------------EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCccc
Confidence 5544 6899999999887654 89999999887 56677888889
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 475 FAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 475 ~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..++|+|||++|++++.++..++|+
T Consensus 475 ~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 475 YAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEECTTSCEEEEEESCCCCCEEC
T ss_pred CCceEcCCCCEEEEEecccCCcCcc
Confidence 9999999999999999988777775
No 130
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.4e-27 Score=247.80 Aligned_cols=221 Identities=22% Similarity=0.335 Sum_probs=182.1
Q ss_pred cccccccCCcccEEEEEEcCC--CCeEEEEeCCCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCC--CCEEEEEeCCC
Q 010816 99 RCSATIAGHTEAVLSVAFSPD--GRQLASGSGDTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSAD--GKHLVSGSKAG 172 (500)
Q Consensus 99 ~~~~~~~gh~~~V~~~~~sp~--~~~lat~~~d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~--~~~l~s~~~d~ 172 (500)
.+...+.+|.++|.+++|+|+ +++|++|+.||+|++||+.++. ....+.+|...|.+++|+|+ ++++++|+.||
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg 123 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG 123 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence 345567899999999999998 9999999999999999999876 66778899999999999999 99999999999
Q ss_pred eEEEEeCCCCCc-ccccccCcccceEEEEeeeeec--------CCCCceEEEEeCCCcEEEEECCCC----eEEEEecCc
Q 010816 173 ELQCWDPQTGKP-SGNPLSGHKKWITGISWEPVHL--------NAPCRRFVSASKDGDARIWDVSLR----KCVICLSGH 239 (500)
Q Consensus 173 ~i~~wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--------~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h 239 (500)
.|++||+.++.. ....+.+|...|.++.|.|... ..++..+++|+.||.|++||++.+ .+...+.+|
T Consensus 124 ~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 124 KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 999999987743 2234578899999999988411 113568999999999999999876 566778899
Q ss_pred cccEEEEEeCCC---C-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 240 TLAVTCVKWGGD---G-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 240 ~~~v~~~~~~~~---~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
...|.+++|+++ + .+++|+.||.|++||+.++....
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~---------------------------------------- 243 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPW---------------------------------------- 243 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCC----------------------------------------
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcc----------------------------------------
Confidence 999999999998 5 58899999999999987642100
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 316 AALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
........+|...|.+++|+|+|++|++|+.||.|++||+.++.
T Consensus 244 ----------------------------------~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 244 ----------------------------------KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ----------------------------------BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ----------------------------------eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 00011123567788999999999999999999999999998643
No 131
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=4e-25 Score=221.21 Aligned_cols=301 Identities=15% Similarity=0.124 Sum_probs=220.6
Q ss_pred ccccccc-CCcccEEEEEEcCCCCeEEEEeCCCcEEEEeC--CCCceeEEecCCCCCEEEEEEcC----CCCEEEEEeC-
Q 010816 99 RCSATIA-GHTEAVLSVAFSPDGRQLASGSGDTTVRLWDL--NTQTPMFKCTGHKNWVLCIAWSA----DGKHLVSGSK- 170 (500)
Q Consensus 99 ~~~~~~~-gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~--~~~~~~~~~~~h~~~v~~v~~s~----~~~~l~s~~~- 170 (500)
.+..++. ||. +.+++|+|||++|++++.|++|++||+ .+++.+..+. +...+..++|+| ||++|++++.
T Consensus 170 ~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~ 246 (543)
T 1nir_A 170 KIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYW 246 (543)
T ss_dssp CEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEE
T ss_pred eEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEcc
Confidence 3455565 444 889999999999999999999999999 7887777776 455689999999 9999999885
Q ss_pred CCeEEEEeCCCCCccccccc-C--------cc-cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE--EecC
Q 010816 171 AGELQCWDPQTGKPSGNPLS-G--------HK-KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI--CLSG 238 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~-~--------~~-~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~--~~~~ 238 (500)
+++|.+||..+++....... + |. ..+.++.++|.. ...+++...++.|.+||..+.+.+. .+ .
T Consensus 247 ~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~----~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~ 321 (543)
T 1nir_A 247 PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEH----PEFIVNVKETGKVLLVNYKDIDNLTVTSI-G 321 (543)
T ss_dssp SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSS----SEEEEEETTTTEEEEEECTTSSSCEEEEE-E
T ss_pred CCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCC----CEEEEEECCCCeEEEEEecCCCcceeEEe-c
Confidence 89999999988876543211 1 22 256677776532 2457788889999999998765433 23 2
Q ss_pred ccccEEEEEeCCCCe-EEE-EeCCCeEEEEeCCCCeeEEEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 239 HTLAVTCVKWGGDGV-IYT-GSQDCTIKVWETTQGKLIRELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 239 h~~~v~~~~~~~~~~-l~t-~~~dg~i~lwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
+...+.++.|++++. +++ +..+++|.+||..+++++..+.. |......+ ++++
T Consensus 322 ~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~-------------------- 380 (543)
T 1nir_A 322 AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPK-------------------- 380 (543)
T ss_dssp CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETT--------------------
T ss_pred cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCC--------------------
Confidence 445567789999985 444 45689999999999998877753 22111111 1221
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCC------CCCceeeecccCcEEEEEECCCCCEEEEEe------
Q 010816 313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVS------KQPKTRMTGHQQLVNHVYFSPDGQWVASAS------ 379 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~------~~~~~~~~~h~~~v~~l~~sp~g~~lasgs------ 379 (500)
.+..+++++ .|++|.+||.... ......+.+|...+..++|+|+|++|++++
T Consensus 381 ---------------~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~ 445 (543)
T 1nir_A 381 ---------------YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA 445 (543)
T ss_dssp ---------------TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred ---------------CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence 123456665 6899999998652 234566778888888999999999999987
Q ss_pred -CCCcEEEEeCCCCceE-EEE--------eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-
Q 010816 380 -FDKSIKLWNGTTGKFV-AVF--------RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS- 448 (500)
Q Consensus 380 -~Dg~i~lwd~~~~~~~-~~~--------~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s- 448 (500)
.+++|.+||..+++.. ..+ ..+...+..+ .|+|+|+.++.+.
T Consensus 446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------------------------~~~~~g~~~~~s~~ 498 (543)
T 1nir_A 446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQP---------------------------EYNKRGDEVWFSVW 498 (543)
T ss_dssp HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEE---------------------------EECSSSSEEEEEEE
T ss_pred ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEec---------------------------cCCCCCCEEEEEee
Confidence 3789999999998866 443 2333334333 6799999988763
Q ss_pred ----CCCcEEEEECCCccccccccCc
Q 010816 449 ----KDSTLKVWDIRTQKLKQDLPGH 470 (500)
Q Consensus 449 ----~d~~v~iwd~~~~~~~~~~~~h 470 (500)
.|+.|.|||.+++++++.++++
T Consensus 499 ~~~~~~~~i~v~D~~t~~~~~~i~~~ 524 (543)
T 1nir_A 499 NGKNDSSALVVVDDKTLKLKAVVKDP 524 (543)
T ss_dssp CCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred cCCCCCCeEEEEECCCceEEEeecCC
Confidence 3799999999999998887754
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.94 E-value=1.2e-25 Score=235.14 Aligned_cols=311 Identities=14% Similarity=0.117 Sum_probs=216.5
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCCCCEEEEEeCC---------CeEEEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSKA---------GELQCW 177 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~d---------~~i~~w 177 (500)
.+.+++|+|||+++++ +.||+|++||+.+++....+.+|.. .|.+++|||||++|++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3567899999998877 7899999999999887777777665 49999999999999998764 788899
Q ss_pred eCCCCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-------------
Q 010816 178 DPQTGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV------------- 243 (500)
Q Consensus 178 d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v------------- 243 (500)
|+.+++... ....+|...+..+.|+| +++.++.++. +.|++||+.+++.......+...+
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SP-----dG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee 170 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGP-----KGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE 170 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCS-----STTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred ECCCCceEeccCCccccccccccEECC-----CCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence 999887521 11234445577888877 5567888776 799999999887776655544333
Q ss_pred -----EEEEeCCCCe-EEEEeCCC----------------------------------eEEEEeCCCCeeEEEeecC---
Q 010816 244 -----TCVKWGGDGV-IYTGSQDC----------------------------------TIKVWETTQGKLIRELKGH--- 280 (500)
Q Consensus 244 -----~~~~~~~~~~-l~t~~~dg----------------------------------~i~lwd~~~~~~~~~~~~~--- 280 (500)
.++.|+|||. |++++.|+ .|++||+.+++....+..+
T Consensus 171 ~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 171 ILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp TSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred eccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccC
Confidence 7899999984 66665442 7999999888765555543
Q ss_pred ---CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee----CCCeEEEEcCCCCCCCc
Q 010816 281 ---GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS----DDFTMFLWEPAVSKQPK 353 (500)
Q Consensus 281 ---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s----~d~~v~~wd~~~~~~~~ 353 (500)
...+..++++|+.. .++..+ .+..|++||+.......
T Consensus 251 ~~~~~~~~~~~~SpDg~------------------------------------~l~~~~~~~~~~~~i~~~d~~~g~~~~ 294 (723)
T 1xfd_A 251 RMREYYITMVKWATSTK------------------------------------VAVTWLNRAQNVSILTLCDATTGVCTK 294 (723)
T ss_dssp GGSSEEEEEEEESSSSE------------------------------------EEEEEEETTSCEEEEEEEETTTCCEEE
T ss_pred CCccceeEEEEEeCCCe------------------------------------EEEEEEcCCCCeEEEEEEeCCCCcceE
Confidence 56788888888642 343332 34578999976543222
Q ss_pred eeeecccCcEE----EEEECCCCCEEEE--EeCCC------cEEEEe-CCCCc--eEEEEeCCcccEEEEEeeeeeeecC
Q 010816 354 TRMTGHQQLVN----HVYFSPDGQWVAS--ASFDK------SIKLWN-GTTGK--FVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 354 ~~~~~h~~~v~----~l~~sp~g~~las--gs~Dg------~i~lwd-~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
.....+...+. .++|+|||+.|+. +..|+ .|++|| ..+++ +...+..+...+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~----------- 363 (723)
T 1xfd_A 295 KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK----------- 363 (723)
T ss_dssp EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE-----------
T ss_pred EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEe-----------
Confidence 11123334443 7899999997764 45677 577788 34443 02223222222211
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECC---CcEEEEECCCcc--ccccccC---cccCEEEEEEcCCCCEEEEE
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD---STLKVWDIRTQK--LKQDLPG---HADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~--~~~~~~~---h~~~V~~l~~s~dg~~l~s~ 489 (500)
.++|+|+|+.|+..+.+ +.++||++.... ....+.. |...+..++|+|||++|+..
T Consensus 364 ---------------~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 364 ---------------ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp ---------------EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred ---------------eeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 13689999999877665 789999986432 2334443 66778899999999988764
No 133
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.4e-24 Score=210.90 Aligned_cols=279 Identities=17% Similarity=0.152 Sum_probs=204.9
Q ss_pred CCEEEEEEcCCCC-EEEEEe----CCC----eEEEEeC--CCCCccc-ccccCcccceEEEEeeeee---------cCCC
Q 010816 151 NWVLCIAWSADGK-HLVSGS----KAG----ELQCWDP--QTGKPSG-NPLSGHKKWITGISWEPVH---------LNAP 209 (500)
Q Consensus 151 ~~v~~v~~s~~~~-~l~s~~----~d~----~i~~wd~--~~~~~~~-~~~~~~~~~v~~~~~~~~~---------~~~~ 209 (500)
..+....|++.|. ++++|+ .|| ++++||+ .+++... ..+.+|...+..+.+.+.. ....
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~ 142 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF 142 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 3566677777764 555775 467 8999999 8887542 2356676666655544310 0011
Q ss_pred CceEEEEeCC------CcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCC---eEEEEeCCCCeeEEEeec
Q 010816 210 CRRFVSASKD------GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDC---TIKVWETTQGKLIRELKG 279 (500)
Q Consensus 210 ~~~~~s~s~d------g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg---~i~lwd~~~~~~~~~~~~ 279 (500)
..+++.++.+ +.|++||+.. .....+.+|...+.+++|+|++ .|++++.|+ .|++||+.+++.. .+..
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 3466666554 7999999974 4456677889999999999998 477788775 9999999988765 4566
Q ss_pred CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE-EeeCCC--eEEEEcCCCCCCCceee
Q 010816 280 HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV-SGSDDF--TMFLWEPAVSKQPKTRM 356 (500)
Q Consensus 280 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~s~d~--~v~~wd~~~~~~~~~~~ 356 (500)
+...+.+++++|+. ..++ +++.|+ .|++||+.... ...+
T Consensus 221 ~~~~~~~~~~spdg------------------------------------~~la~~~~~~g~~~i~~~d~~~~~--~~~l 262 (415)
T 2hqs_A 221 FPRHNGAPAFSPDG------------------------------------SKLAFALSKTGSLNLYVMDLASGQ--IRQV 262 (415)
T ss_dssp CSSCEEEEEECTTS------------------------------------SEEEEEECTTSSCEEEEEETTTCC--EEEC
T ss_pred CCCcccCEEEcCCC------------------------------------CEEEEEEecCCCceEEEEECCCCC--EEeC
Confidence 77788899998863 3454 666655 49999976543 3567
Q ss_pred ecccCcEEEEEECCCCCEEEEEeC-CC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816 357 TGHQQLVNHVYFSPDGQWVASASF-DK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs~-Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (500)
..|...+.+++|+|||++|++++. ++ .|++||+.+++.. .+..|...+..+
T Consensus 263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~------------------------- 316 (415)
T 2hqs_A 263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA------------------------- 316 (415)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEE-------------------------
T ss_pred cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCe-------------------------
Confidence 788889999999999999998886 44 6888899887643 334444444333
Q ss_pred eeEEcCCCCEEEEEECC---CcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC---cEEEec
Q 010816 434 LYSWSADSRLLLSGSKD---STLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR---VLKLWM 499 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~---~v~iW~ 499 (500)
+|+|+|++|++++.+ ..|++||+.+++.. .+..|. .+.+++|+|||++|++++.|+ .|++|+
T Consensus 317 --~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 317 --DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp --EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred --EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 689999999988864 58999999988764 455554 789999999999999998887 788886
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.93 E-value=6.9e-24 Score=229.93 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=243.0
Q ss_pred ccccccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecC-----------CCCCEEEEEEc-CCCCEEEE
Q 010816 100 CSATIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTG-----------HKNWVLCIAWS-ADGKHLVS 167 (500)
Q Consensus 100 ~~~~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~-----------h~~~v~~v~~s-~~~~~l~s 167 (500)
....+.+|. .+...+|+|||++||.+. ++.|.+||+... .+..+.+ |...+.+++|+ |||++|++
T Consensus 237 ~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 237 DLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp SCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred cceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 344555565 356779999999999884 899999999543 3334444 34478999999 99999998
Q ss_pred EeCCCeEEEEeCCCCCcccccccCccc-ceEEEEeeeeecCCCCceEEEEeCCCcEE-EEECCCCeEEEEecCccccEEE
Q 010816 168 GSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCRRFVSASKDGDAR-IWDVSLRKCVICLSGHTLAVTC 245 (500)
Q Consensus 168 ~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~s~s~dg~v~-iwd~~~~~~~~~~~~h~~~v~~ 245 (500)
++ ++.|.+|+..++... .+..|.. .+..+.|+ +++.++.++.+..++ +||+..++... +.+|...+.+
T Consensus 314 ~~-~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~s------dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~ 383 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVL--KVPEPLRIRYVRRGGD------TKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFA 383 (1045)
T ss_dssp EE-TTEEEEECTTSSBEE--ECSCCSCEEEEEECSS------SEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEE
T ss_pred EE-cCEEEEEcCCCCceE--EccCCCcceEEeeeEc------CCCeEEEEECCCceEEEEECCCCCceE-ecCCccceee
Confidence 87 889999999877543 2445555 67777774 345788888888888 99998776554 3488889999
Q ss_pred EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++|++|+ .|++++.++.|++||+.+++.......|...+..++++|+.
T Consensus 384 ~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG------------------------------- 432 (1045)
T 1k32_A 384 MGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNS------------------------------- 432 (1045)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTS-------------------------------
T ss_pred eEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCC-------------------------------
Confidence 9999998 57789999999999999998877777888888888888863
Q ss_pred cCCCCcEEEEeeCC----------CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816 325 KGNAPERLVSGSDD----------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 325 ~~~~~~~~~s~s~d----------~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
..+++++.+ +.|++||+.... ...+..|...+..++|+|||++|+.++.++..++|+......
T Consensus 433 -----~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~ 505 (1045)
T 1k32_A 433 -----RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF 505 (1045)
T ss_dssp -----CEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCE
T ss_pred -----CeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcccc
Confidence 345555543 489999986543 456677888899999999999999999999999998764432
Q ss_pred EEEEeCCcccEEEEEeeeeee----------------ecCCC--Cceeee-eccccceeeEEcCCCCEEEE---------
Q 010816 395 VAVFRGHVGPVYQIRFELIYC----------------FRYPS--NFYCVV-DMSCCMSLYSWSADSRLLLS--------- 446 (500)
Q Consensus 395 ~~~~~~h~~~v~~~~~~~~~~----------------~~~~~--~~~~~~-~~~~~~~~~~~s~~~~~l~s--------- 446 (500)
. ..+...++.+.+..... ..... ...... .....+..++++|+|+++++
T Consensus 506 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~ 582 (1045)
T 1k32_A 506 S---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA 582 (1045)
T ss_dssp E---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred c---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence 1 11222233222210000 00000 000000 01123455678999987775
Q ss_pred ----EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 447 ----GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 447 ----~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+..+.+||+.+++... +. ..+.+++|||||++|++++.| .|++|+
T Consensus 583 ~~~~~~~~~~l~~~d~~~~~~~~-l~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 583 YYQGAPEKGVLLKYDVKTRKVTE-VK---NNLTDLRLSADRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp HHHCCCCCEEEEEEETTTCCEEE-EE---EEEEEEEECTTSCEEEEEETT-SCEEEE
T ss_pred cccccCCCceEEEEECCCCcEEE-ee---cCcceEEECCCCCEEEEEcCC-cEEEEe
Confidence 1234578899998877532 22 568899999999999999887 688886
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.93 E-value=7.9e-24 Score=220.59 Aligned_cols=311 Identities=14% Similarity=0.147 Sum_probs=214.8
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCC-----------------CCEEEEEEcCCCCEEEEEeCCC
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHK-----------------NWVLCIAWSADGKHLVSGSKAG 172 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~-----------------~~v~~v~~s~~~~~l~s~~~d~ 172 (500)
+..++|. |..+++++.|+ | +||+.+++.+ ..+..|. ..|.+++|+|| +.++.+ .|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 3346777 66778888888 8 9999988762 2222332 56999999999 666555 469
Q ss_pred eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----CeEEEEecCcccc-----
Q 010816 173 ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVICLSGHTLA----- 242 (500)
Q Consensus 173 ~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~~~~h~~~----- 242 (500)
.|++||+.+++.. .+..+...+.++.|+| +++++++ +.|+.|++||+.+ ++.......+...
T Consensus 102 ~i~~~d~~~~~~~--~l~~~~~~~~~~~~Sp-----dG~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 102 GLVGFDMLARKVT--YLFDTNEETASLDFSP-----VGDRVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp EEEEEETTTTEEE--EEECCTTCCTTCEECT-----TSSEEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred EEEEEECCCCceE--EccCCcccccCCcCCC-----CCCEEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 9999999887543 2334556677788876 4567777 4789999999988 7766554444443
Q ss_pred ---------EEEEEeCCCCe-EEEEe---------------------------------CCCeEEEEeCCCCeeEEEee-
Q 010816 243 ---------VTCVKWGGDGV-IYTGS---------------------------------QDCTIKVWETTQGKLIRELK- 278 (500)
Q Consensus 243 ---------v~~~~~~~~~~-l~t~~---------------------------------~dg~i~lwd~~~~~~~~~~~- 278 (500)
+.++.|+|||. |++++ .+..|++||+.+++......
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 37899999984 66665 44789999999887654432
Q ss_pred -cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC-----eEEEEcCCCCCCC
Q 010816 279 -GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF-----TMFLWEPAVSKQP 352 (500)
Q Consensus 279 -~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~-----~v~~wd~~~~~~~ 352 (500)
.+...+..++++|+. ..++.++.++ .|++||+......
T Consensus 254 ~~~~~~~~~~~~spdg------------------------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDE------------------------------------NILYVAEVNRAQNECKVNAYDAETGRFV 297 (706)
T ss_dssp SCTTCEEEEEEECTTS------------------------------------SEEEEEEECTTSCEEEEEEEETTTCCEE
T ss_pred CCCceeEeeEEEECCC------------------------------------CEEEEEEeCCCCCeeEEEEEECCCCcee
Confidence 456678888888763 4566666554 8999998654222
Q ss_pred ceeee-cccC---cEEEEEECC--CCCEEEEEeCCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceee
Q 010816 353 KTRMT-GHQQ---LVNHVYFSP--DGQWVASASFDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCV 425 (500)
Q Consensus 353 ~~~~~-~h~~---~v~~l~~sp--~g~~lasgs~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~ 425 (500)
..... .+.. .+.+++|+| ||++|++++.|+.++||++. +++.+..+..|...+..+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~----------------- 360 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNF----------------- 360 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEE-----------------
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEee-----------------
Confidence 22221 2222 236789999 99999999999999999876 566666676666555431
Q ss_pred eeccccceeeEEcCCCCEEEEEECC-C----cEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCC----CcEE
Q 010816 426 VDMSCCMSLYSWSADSRLLLSGSKD-S----TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKD----RVLK 496 (500)
Q Consensus 426 ~~~~~~~~~~~~s~~~~~l~s~s~d-~----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D----~~v~ 496 (500)
++|+|+|+.|+.++.+ + .|..||+.+++. ..+. |...+.+++|||||++|+.+..+ +.|+
T Consensus 361 ---------~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~ 429 (706)
T 2z3z_A 361 ---------AGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVT 429 (706)
T ss_dssp ---------EEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEE
T ss_pred ---------eEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEE
Confidence 2679999988766554 3 567777777653 3343 66779999999999999876444 4699
Q ss_pred Eec
Q 010816 497 LWM 499 (500)
Q Consensus 497 iW~ 499 (500)
+|+
T Consensus 430 l~d 432 (706)
T 2z3z_A 430 VTN 432 (706)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=9.3e-24 Score=195.11 Aligned_cols=254 Identities=19% Similarity=0.243 Sum_probs=181.8
Q ss_pred EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-CCcccccccCc-ccceEEEEee
Q 010816 125 SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-GKPSGNPLSGH-KKWITGISWE 202 (500)
Q Consensus 125 t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~-~~~v~~~~~~ 202 (500)
+++.|++|++||+.+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++... ....+ ...+.++.|+
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK-VDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE-CCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE-eccccccccccceEEC
Confidence 3467899999999887765 4556889999999999999999986 88999999998 76543 23333 4667788887
Q ss_pred eeecCCCCceEEEEe--CCCcEEEEEC--CCCeEEEEecCccccEEEEEeCCCCe-EE-EEeCCCeEEEEeCCCCeeEEE
Q 010816 203 PVHLNAPCRRFVSAS--KDGDARIWDV--SLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 203 ~~~~~~~~~~~~s~s--~dg~v~iwd~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~~dg~i~lwd~~~~~~~~~ 276 (500)
| ++..+++++ .++..+||.+ ..++ ...+..+. .+.++.|++++. |+ +++.|+.+++|++....
T Consensus 94 p-----dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~---- 162 (297)
T 2ojh_A 94 P-----DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS---- 162 (297)
T ss_dssp T-----TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----
T ss_pred C-----CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCC----
Confidence 6 456788887 3345555544 4444 23333333 478888988873 43 67788888888742100
Q ss_pred eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee
Q 010816 277 LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM 356 (500)
Q Consensus 277 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~ 356 (500)
.....+
T Consensus 163 --------------------------------------------------------------------------~~~~~~ 168 (297)
T 2ojh_A 163 --------------------------------------------------------------------------GVETRL 168 (297)
T ss_dssp --------------------------------------------------------------------------CCEEEC
T ss_pred --------------------------------------------------------------------------CcceEc
Confidence 001112
Q ss_pred ecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCC-CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeecccccee
Q 010816 357 TGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGT-TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSL 434 (500)
Q Consensus 357 ~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (500)
..+...+.+++|+|+|++|+.++ .|+.+++|++. .+..+..+..|...+..+
T Consensus 169 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 222 (297)
T 2ojh_A 169 THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFP-------------------------- 222 (297)
T ss_dssp CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEE--------------------------
T ss_pred ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCe--------------------------
Confidence 23455688999999999888766 58999999876 455556666665544443
Q ss_pred eEEcCCCCEEEEEECC-----------CcEEEEECCCcccc--ccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 435 YSWSADSRLLLSGSKD-----------STLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d-----------~~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
+|+|+|++|++++.+ +.|++||+.+++.. ..+.+|...+..++|+|||++|++++.|.
T Consensus 223 -~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 -HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp -EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred -EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 679999999988876 56999999887653 34447888899999999999999887764
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.2e-23 Score=218.47 Aligned_cols=281 Identities=11% Similarity=0.074 Sum_probs=198.5
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-CC-----eEEEEeCCCCCcccccccCcc------------------------cceEEE
Q 010816 150 KNWVLCIAWSADGKHLVSGSK-AG-----ELQCWDPQTGKPSGNPLSGHK------------------------KWITGI 199 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~-d~-----~i~~wd~~~~~~~~~~~~~~~------------------------~~v~~~ 199 (500)
...+.+++|+|||++|++++. |+ .|.+||+.+++... .+..+. ..+.++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL-LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE-EECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE-ccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 456899999999999999998 88 89999999886432 222221 236677
Q ss_pred EeeeeecCCCCceEEEEeCCCcEEEEECCCCe--EEEEecCccccEEEEEeCCCCe-EEEEeCCCeEEEEeCCCCeeEEE
Q 010816 200 SWEPVHLNAPCRRFVSASKDGDARIWDVSLRK--CVICLSGHTLAVTCVKWGGDGV-IYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 200 ~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~-l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
+|+| +++++++++. +.|++||+.++. ....+..|...+.++.|+|||. |+.++ ++.|++||+.+++..+.
T Consensus 115 ~~Sp-----Dg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSP-----DAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECT-----TSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECC-----CCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 7776 5667887776 999999998873 3445667888899999999996 55444 67999999998876654
Q ss_pred eecCCce----------------EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC-
Q 010816 277 LKGHGHW----------------VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF- 339 (500)
Q Consensus 277 ~~~~~~~----------------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~- 339 (500)
...+... +..++++|+.. .++.++.|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~------------------------------------~l~~~~~d~~ 231 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS------------------------------------AIAYARIDES 231 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS------------------------------------CEEEEEEECT
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCC------------------------------------EEEEEEEcCC
Confidence 4433322 25566776642 233333222
Q ss_pred --------------------------------eEEEEcCCC-CCCCceeee-cccCcEEEEEECCCCCEEEEEeC-----
Q 010816 340 --------------------------------TMFLWEPAV-SKQPKTRMT-GHQQLVNHVYFSPDGQWVASASF----- 380 (500)
Q Consensus 340 --------------------------------~v~~wd~~~-~~~~~~~~~-~h~~~v~~l~~sp~g~~lasgs~----- 380 (500)
.|++||+.. ......... .|...+..++| |||++|+.++.
T Consensus 232 ~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~ 310 (741)
T 2ecf_A 232 PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQK 310 (741)
T ss_dssp TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSS
T ss_pred CCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCC
Confidence 688888765 432211111 47778999999 99999997764
Q ss_pred CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-
Q 010816 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR- 459 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~- 459 (500)
+..|++||+.+++....+..+..... ..+..++|+|||+++++++.|+.++||.+.
T Consensus 311 ~~~i~~~d~~~g~~~~~~~~~~~~~~-----------------------~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 311 KLDLVEVTLASNQQRVLAHETSPTWV-----------------------PLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCC-----------------------CCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred eEEEEEEECCCCceEEEEEcCCCCcC-----------------------CcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 56899999999987766554332100 001223789999999999999988888765
Q ss_pred CccccccccCcccCEEEE-EEcCCCCEEEE-EeCCC--cEEEec
Q 010816 460 TQKLKQDLPGHADEVFAV-DWSPDGEKVAS-GGKDR--VLKLWM 499 (500)
Q Consensus 460 ~~~~~~~~~~h~~~V~~l-~~s~dg~~l~s-~~~D~--~v~iW~ 499 (500)
.++ ...+..|...|..+ .|+|||++|+. ++.|+ +++||.
T Consensus 368 ~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 368 KGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp SSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred CCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 344 66777888888887 59999998865 45555 888985
No 138
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=6e-22 Score=188.18 Aligned_cols=274 Identities=12% Similarity=0.102 Sum_probs=201.6
Q ss_pred cccEEEEEEcCCCCeEEEEeC-------CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeC
Q 010816 108 TEAVLSVAFSPDGRQLASGSG-------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDP 179 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~-------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~ 179 (500)
...+..++|+|+++++++++. ++.|.+||..+++.+..+.. ...+..++|+|+|++++ +...++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 346788999999999888874 56899999999887766653 34477899999999655 5556799999999
Q ss_pred CCCCcccccccCccc--------ceEEEEeeeeecCCCCceEEEEe--CCCcEEEEECCCCeEEEEecCccccEEEEEeC
Q 010816 180 QTGKPSGNPLSGHKK--------WITGISWEPVHLNAPCRRFVSAS--KDGDARIWDVSLRKCVICLSGHTLAVTCVKWG 249 (500)
Q Consensus 180 ~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~~~~~~~~s~s--~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~ 249 (500)
.+++.......++.. ...++.|+| ++++++.++ .++.|.+||..+++.+..+..+...+.++.|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-----ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-----TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECC-----CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 988754322111111 256677766 344555444 57899999999999888877566667788999
Q ss_pred CCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 250 GDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 250 ~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
+++ .+++++.++.|.+||..+++....+...
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~------------------------------------------------ 225 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLL------------------------------------------------ 225 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECC------------------------------------------------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC------------------------------------------------
Confidence 886 5788888999999999887655433210
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
..++...+..++|+|+|+++++++. ++.|.+||..+++.+..+.....
T Consensus 226 ---------------------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 274 (353)
T 3vgz_A 226 ---------------------------DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES---- 274 (353)
T ss_dssp ---------------------------CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC----
T ss_pred ---------------------------CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC----
Confidence 0012335778999999997776665 59999999999988766553221
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEE
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKV 486 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 486 (500)
..++|+|+|++++.++ .++.|.+||+.+++.+..+..+ ..+.+++|+|||++|
T Consensus 275 -------------------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l 328 (353)
T 3vgz_A 275 -------------------------LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTL 328 (353)
T ss_dssp -------------------------CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEE
T ss_pred -------------------------ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEE
Confidence 1136799999766665 6899999999998887776654 467899999999987
Q ss_pred EEEeCC
Q 010816 487 ASGGKD 492 (500)
Q Consensus 487 ~s~~~D 492 (500)
+.+..+
T Consensus 329 ~v~~~~ 334 (353)
T 3vgz_A 329 YVSVKQ 334 (353)
T ss_dssp EEEEEC
T ss_pred EEEEcc
Confidence 766554
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=3.5e-22 Score=188.13 Aligned_cols=275 Identities=10% Similarity=0.090 Sum_probs=187.6
Q ss_pred EEcCCCCe-EEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEeCCCCCcccccccCc
Q 010816 115 AFSPDGRQ-LASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-AGELQCWDPQTGKPSGNPLSGH 192 (500)
Q Consensus 115 ~~sp~~~~-lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~ 192 (500)
.|.+++.+ +++++.++.|++||..+++.......+...+ +++|+|+|++|++++. ++.|.+||+.+++.....+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45566555 6677889999999999998877776666667 9999999997776665 8999999999887522233444
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeCCC---cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEE-EeCCCe-EEEE
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASKDG---DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYT-GSQDCT-IKVW 266 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg---~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t-~~~dg~-i~lw 266 (500)
.....++.|+| ++++++++..++ .|++||+.+++.+..+..+. ...+++|++++. +++ ...++. |.+|
T Consensus 83 ~~~~~~~~~s~-----dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~ 156 (331)
T 3u4y_A 83 QSSMADVDITP-----DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRF 156 (331)
T ss_dssp SSCCCCEEECT-----TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEE
T ss_pred CCCccceEECC-----CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEE
Confidence 44444477765 455677555443 89999999998887766543 458899999973 544 456678 9999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
++.....+.... ..
T Consensus 157 ~~~~~g~~~~~~--------------------------------------------------------------~~---- 170 (331)
T 3u4y_A 157 KIDADGVLFDTG--------------------------------------------------------------QE---- 170 (331)
T ss_dssp EECTTCCEEEEE--------------------------------------------------------------EE----
T ss_pred EECCCCcEeecC--------------------------------------------------------------Cc----
Confidence 976432111000 00
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCCCce---EEEEeCCcccEEEEEeeeeeeecCCCCc
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTTGKF---VAVFRGHVGPVYQIRFELIYCFRYPSNF 422 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 422 (500)
..........++|+|+|++++ ++..++.|++||+.+++. +..+..+..
T Consensus 171 ---------~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~------------------- 222 (331)
T 3u4y_A 171 ---------FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNL------------------- 222 (331)
T ss_dssp ---------EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSC-------------------
T ss_pred ---------cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCC-------------------
Confidence 001122367899999998665 445689999999998887 555443211
Q ss_pred eeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccc--cccccCc----cc---CEEEEEEcCCCCEEEEEeC-
Q 010816 423 YCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKL--KQDLPGH----AD---EVFAVDWSPDGEKVASGGK- 491 (500)
Q Consensus 423 ~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~--~~~~~~h----~~---~V~~l~~s~dg~~l~s~~~- 491 (500)
...++|+|+|++|+.++ .++.|.+||+.+++. +..+..+ .. ....++|+|||++|+.++.
T Consensus 223 ---------~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 293 (331)
T 3u4y_A 223 ---------PGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI 293 (331)
T ss_dssp ---------CCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT
T ss_pred ---------CceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC
Confidence 12237899999777665 578899999998776 2222211 11 2256899999999866554
Q ss_pred CCcEEEec
Q 010816 492 DRVLKLWM 499 (500)
Q Consensus 492 D~~v~iW~ 499 (500)
++.|++|+
T Consensus 294 ~~~v~v~d 301 (331)
T 3u4y_A 294 SRELKVFT 301 (331)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 57999997
No 140
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.91 E-value=2.5e-22 Score=209.20 Aligned_cols=280 Identities=12% Similarity=0.123 Sum_probs=196.4
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC-----CC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT-----GK 183 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~-----~~ 183 (500)
..|.+++|+|| +.++.+ .|+.|++||+.+++.. .+..+...+.+++|+|||++|+++ .|+.|.+||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence 56999999999 666555 3599999999887654 445567788999999999999985 689999999988 76
Q ss_pred cccccccCccc-------------ceEEEEeeeeecCCCCceEEEEe---------------------------------
Q 010816 184 PSGNPLSGHKK-------------WITGISWEPVHLNAPCRRFVSAS--------------------------------- 217 (500)
Q Consensus 184 ~~~~~~~~~~~-------------~v~~~~~~~~~~~~~~~~~~s~s--------------------------------- 217 (500)
.......++.. .+.++.|+| +++++++++
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~ 232 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS 232 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence 54322222221 146788876 567788877
Q ss_pred CCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCe-EEEEeCCC-----eEEEEeCCCCeeEEEee--cCCce---E
Q 010816 218 KDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGV-IYTGSQDC-----TIKVWETTQGKLIRELK--GHGHW---V 284 (500)
Q Consensus 218 ~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~t~~~dg-----~i~lwd~~~~~~~~~~~--~~~~~---v 284 (500)
.+..|++||+.+++...... .|...+.++.|++|+. |++++.|+ .|++||+.+++....+. .+..+ +
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~ 312 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL 312 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence 44689999999887655442 5677899999999985 77766665 89999999884333332 11111 1
Q ss_pred EEEEecC--cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816 285 NSLALST--EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362 (500)
Q Consensus 285 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~ 362 (500)
..+.+++ + +..+++++.|+.+++|+..........+..|...
T Consensus 313 ~~~~~sp~~d------------------------------------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~ 356 (706)
T 2z3z_A 313 HPLTFLPGSN------------------------------------NQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWE 356 (706)
T ss_dssp SCCEECTTCS------------------------------------SEEEEEECTTSSCEEEEEETTSCEEEECCCSSSC
T ss_pred CCceeecCCC------------------------------------CEEEEEEccCCccEEEEEECCCCEEEecCCCCeE
Confidence 3334443 2 3467788889999999765333444556677777
Q ss_pred EEE-EEECCCCCEEEEEeC-CC----cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 363 VNH-VYFSPDGQWVASASF-DK----SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 363 v~~-l~~sp~g~~lasgs~-Dg----~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
+.. ++|+|+|+.|+.++. ++ .|+.||..+++. ..+. |...+..+ +
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-~~~~~~~~---------------------------~ 407 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-PESGMHRT---------------------------Q 407 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-CSSSEEEE---------------------------E
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-CCCceEEE---------------------------E
Confidence 876 799999988766554 44 677778777653 2222 33444433 6
Q ss_pred EcCCCCEEEEEECC----CcEEEEECCCcc
Q 010816 437 WSADSRLLLSGSKD----STLKVWDIRTQK 462 (500)
Q Consensus 437 ~s~~~~~l~s~s~d----~~v~iwd~~~~~ 462 (500)
|+|+|++++.+..+ +.|++||+.+++
T Consensus 408 ~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 408 LSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred ECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 79999988876543 569999998876
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=6.2e-22 Score=187.18 Aligned_cols=291 Identities=12% Similarity=0.136 Sum_probs=185.9
Q ss_pred EEEEeCCCcEEEEeCCC-Cc-eeEEecCCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEeCC--CCCccc-ccccCcccce
Q 010816 123 LASGSGDTTVRLWDLNT-QT-PMFKCTGHKNWVLCIAWSADGKHLVSGSKA-GELQCWDPQ--TGKPSG-NPLSGHKKWI 196 (500)
Q Consensus 123 lat~~~d~~i~iwd~~~-~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~~i~~wd~~--~~~~~~-~~~~~~~~~v 196 (500)
+++++.|+.|++||+.. +. .......|...+.+++|+|+|++|++++.+ +.|.+|++. +++... ..+..+. .+
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~ 86 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SL 86 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CC
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CC
Confidence 44457899999999963 32 222233577789999999999999888876 999999987 554221 1122222 56
Q ss_pred EEEEeeeeecCCCCceEEEEe-CCCcEEEEEC---CCCeEEEEecCccccEEEEEeCCCC-eEEEEe-CCCeEEEEeCCC
Q 010816 197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDV---SLRKCVICLSGHTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETTQ 270 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~---~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~-~dg~i~lwd~~~ 270 (500)
..+.|+| +++.+++++ .++.|++||+ ...+.+..+..+ ..+.+++|++++ .+++++ .++.|++||+.+
T Consensus 87 ~~~~~s~-----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 87 THISTDH-----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp SEEEECT-----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cEEEEcC-----CCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence 7777766 345555554 5889999999 444455555444 357788999987 466666 899999999987
Q ss_pred -CeeEE----Eeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE-EEeeCCCeEEE
Q 010816 271 -GKLIR----ELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL-VSGSDDFTMFL 343 (500)
Q Consensus 271 -~~~~~----~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~s~d~~v~~ 343 (500)
++... .+.. ....+..++++++ +..+ +++..++.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~pd------------------------------------g~~l~~~~~~~~~i~~ 204 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHPN------------------------------------EQYAYCVNELNSSVDV 204 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECTT------------------------------------SSEEEEEETTTTEEEE
T ss_pred CCceeeecccccccCCCCCcceEEECCC------------------------------------CCEEEEEeCCCCEEEE
Confidence 65432 2222 2335556666654 2334 45568899999
Q ss_pred EcCCCCCCCc---eeee----c--ccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCC--CC--ceEEEEeCCcccEEEEE
Q 010816 344 WEPAVSKQPK---TRMT----G--HQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGT--TG--KFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 344 wd~~~~~~~~---~~~~----~--h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~--~~--~~~~~~~~h~~~v~~~~ 409 (500)
|++....... .... + ....+..++|+|+|++|+ ++..|+.|++||+. ++ +.+..+..+..
T Consensus 205 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------ 278 (343)
T 1ri6_A 205 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ------ 278 (343)
T ss_dssp EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS------
T ss_pred EEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc------
Confidence 9985322111 1111 1 123577899999998777 45579999999987 33 22322322211
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEE--CCCccc--cccccCcccCEEEEEEcCCCC
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWD--IRTQKL--KQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd--~~~~~~--~~~~~~h~~~V~~l~~s~dg~ 484 (500)
...++|+|+|++|++++ .|+.|.+|+ ..+++. +..+... ....+++|.|+.+
T Consensus 279 ----------------------~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 279 ----------------------PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp ----------------------CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred ----------------------cceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 22347899999888887 689999995 445533 3333332 3345777777654
Q ss_pred E
Q 010816 485 K 485 (500)
Q Consensus 485 ~ 485 (500)
.
T Consensus 336 ~ 336 (343)
T 1ri6_A 336 G 336 (343)
T ss_dssp -
T ss_pred C
Confidence 3
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.90 E-value=2.6e-22 Score=204.19 Aligned_cols=275 Identities=12% Similarity=0.078 Sum_probs=190.5
Q ss_pred cccEEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCC-
Q 010816 108 TEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSK---AGELQCWDPQT- 181 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~- 181 (500)
..+|.+++|+|||++||+++. ||+++||++.++.. ..+..|. ..+..++|+|| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999887 99999999866554 4455555 68999999999 77777765 44556654432
Q ss_pred --CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816 182 --GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 182 --~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
+... .+ ...+...+.++.+++++.+++.+.
T Consensus 99 ~~g~~~--~l----------------------------------------------~~~~~~~~~~~s~dg~~~~~~s~~ 130 (582)
T 3o4h_A 99 RPGEEQ--RL----------------------------------------------EAVKPMRILSGVDTGEAVVFTGAT 130 (582)
T ss_dssp STTCCE--EC----------------------------------------------TTSCSBEEEEEEECSSCEEEEEEC
T ss_pred CCCccc--cc----------------------------------------------cCCCCceeeeeCCCCCeEEEEecC
Confidence 1100 00 000111123334444445555555
Q ss_pred CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC-
Q 010816 260 DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD- 338 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d- 338 (500)
++.+.+||+.+++..+....+. .+++++|+ +..++.++.+
T Consensus 131 ~~~~~l~d~~~g~~~~l~~~~~---~~~~~spD------------------------------------G~~la~~~~~~ 171 (582)
T 3o4h_A 131 EDRVALYALDGGGLRELARLPG---FGFVSDIR------------------------------------GDLIAGLGFFG 171 (582)
T ss_dssp SSCEEEEEEETTEEEEEEEESS---CEEEEEEE------------------------------------TTEEEEEEEEE
T ss_pred CCCceEEEccCCcEEEeecCCC---ceEEECCC------------------------------------CCEEEEEEEcC
Confidence 5556699998887655444333 56666665 3467766665
Q ss_pred ---CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeee
Q 010816 339 ---FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELI 413 (500)
Q Consensus 339 ---~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~ 413 (500)
+.|++||+.... ...+.+|...+..++|||||++|+++..|+ .|++||+.+++.. .+.+|...+..+.
T Consensus 172 ~~~~~i~~~d~~~g~--~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~---- 244 (582)
T 3o4h_A 172 GGRVSLFTSNLSSGG--LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYR---- 244 (582)
T ss_dssp TTEEEEEEEETTTCC--CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHC----
T ss_pred CCCeEEEEEcCCCCC--ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhh----
Confidence 779999976543 346778888899999999999999888898 8999999998877 6666654432210
Q ss_pred eeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
........|+|||.++++++.|+.++||++ ++.... +.+.|.+++|+ ||+.+++++.+.
T Consensus 245 ---------------~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~v~~~~~s-dg~~l~~~s~~~ 303 (582)
T 3o4h_A 245 ---------------PTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGNHGRVVLW-RGKLVTSHTSLS 303 (582)
T ss_dssp ---------------CSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSEEEEEEEE-TTEEEEEEEETT
T ss_pred ---------------hccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCceEEEEec-CCEEEEEEcCCC
Confidence 000111238999999999999999999999 555442 33568899999 999999988875
Q ss_pred c---EEEec
Q 010816 494 V---LKLWM 499 (500)
Q Consensus 494 ~---v~iW~ 499 (500)
+ +++|+
T Consensus 304 ~p~~l~~~d 312 (582)
T 3o4h_A 304 TPPRIVSLP 312 (582)
T ss_dssp EEEEEEEET
T ss_pred CCCeEEEEc
Confidence 4 55554
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.1e-21 Score=185.06 Aligned_cols=285 Identities=11% Similarity=0.078 Sum_probs=194.0
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCCC-C-CEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCc----c
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGHK-N-WVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGH----K 193 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~-~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~----~ 193 (500)
++|++++.++.|++||+.+++.+..+.... . .+.+++|+|+|+++ ++++.++.|.+||+.+++.......++ .
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 468999999999999999988776665222 2 47889999999866 456668999999999887543222121 2
Q ss_pred cceEEEEeeeeecCCCCceEEEEe------------CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeCC
Q 010816 194 KWITGISWEPVHLNAPCRRFVSAS------------KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQD 260 (500)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~~~s~s------------~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~d 260 (500)
..+.++.|+| +++++++++ .++.|++||+.+++.+..+.. ...+.++.|++++. ++++ +
T Consensus 82 ~~~~~~~~s~-----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 82 KSLFGAALSP-----DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp ECTTCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--S
T ss_pred ccccceEECC-----CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--C
Confidence 2455666665 455676665 579999999999887766654 33467788999885 6665 6
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE----EEEee
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER----LVSGS 336 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~s 336 (500)
+.|.+||+.+++....+..+... ..+.++++...... ....... .....
T Consensus 154 ~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~--------------------------~~~~~~~~~~~~~~~~ 206 (337)
T 1pby_B 154 RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWN--------------------------QHESSGVMATPFYTAR 206 (337)
T ss_dssp SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCC--------------------------CCTTTTEEEEEEEEEB
T ss_pred CeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEee--------------------------eccCCCceeeeeeccc
Confidence 89999999998877666533210 01122332110000 0000011 11111
Q ss_pred CCC----------eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 337 DDF----------TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 337 ~d~----------~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
.++ .|.+||+.........+..+...+.+++|+|+|++|+++ ++.|++||+.+++.+..+..+.. +.
T Consensus 207 ~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~-~~ 283 (337)
T 1pby_B 207 KDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHS-YY 283 (337)
T ss_dssp TTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSC-CC
T ss_pred cccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCc-ee
Confidence 122 588999876543333345566778899999999999888 79999999999988766653321 12
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH 470 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h 470 (500)
.++|+|+|++|++++.++.|++||+.+++.+..++.+
T Consensus 284 ---------------------------~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~ 320 (337)
T 1pby_B 284 ---------------------------SVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp ---------------------------EEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred ---------------------------eEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcC
Confidence 2367999999999999999999999998887766544
No 144
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=207.47 Aligned_cols=311 Identities=13% Similarity=0.082 Sum_probs=207.6
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCC---CEEEEEEcCCCCEEEEEeC---------CCeEEEEeCC
Q 010816 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN---WVLCIAWSADGKHLVSGSK---------AGELQCWDPQ 180 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~---~v~~v~~s~~~~~l~s~~~---------d~~i~~wd~~ 180 (500)
+++|+|||+++++ +.|++|++||+.++++...+.+|.. .+.+++|||||++|++++. |+.|++||+.
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 6799999965554 4699999999999887766655543 4899999999999998876 7899999999
Q ss_pred CCCccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEe-cCccccE---------------
Q 010816 181 TGKPSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICL-SGHTLAV--------------- 243 (500)
Q Consensus 181 ~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~-~~h~~~v--------------- 243 (500)
+++... ..+ ...+..+.|+| +++.++.++ ++.|++||+.++++.... .++...|
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SP-----DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~ 169 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSP-----VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLA 169 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECS-----STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTC
T ss_pred CCccccceec---CcccccceECC-----CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeeccc
Confidence 886521 112 24577888887 556777775 789999999887765433 2333323
Q ss_pred --EEEEeCCCC-eEEEEeCCC----------------------------------eEEEEeCCCCeeE---E-----Eee
Q 010816 244 --TCVKWGGDG-VIYTGSQDC----------------------------------TIKVWETTQGKLI---R-----ELK 278 (500)
Q Consensus 244 --~~~~~~~~~-~l~t~~~dg----------------------------------~i~lwd~~~~~~~---~-----~~~ 278 (500)
.++.|+||| .|++++.|. .|++||+.+++.. . .+.
T Consensus 170 ~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~ 249 (719)
T 1z68_A 170 TKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIA 249 (719)
T ss_dssp SSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHH
T ss_pred CcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCC
Confidence 479999998 466666542 7889999887642 1 123
Q ss_pred cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee--CC--CeEEEEc----CCCCC
Q 010816 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS--DD--FTMFLWE----PAVSK 350 (500)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s--~d--~~v~~wd----~~~~~ 350 (500)
.+...+..++++|+.. .+++.. .+ ..|.+|| .....
T Consensus 250 ~~~~~~~~~~~SpD~~------------------------------------~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 250 SSDYYFSWLTWVTDER------------------------------------VCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp TSCEEEEEEEESSSSE------------------------------------EEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCcceEEEeEEeCCCe------------------------------------EEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 5677788888887632 233322 22 3478888 54433
Q ss_pred CCceee----ecccCcEE-----EEEECCCCCEEEE--EeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeec
Q 010816 351 QPKTRM----TGHQQLVN-----HVYFSPDGQWVAS--ASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 351 ~~~~~~----~~h~~~v~-----~l~~sp~g~~las--gs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
.. ..+ .+|...+. .+.|+|||+.|+. +..+| .|++||+.+++ ...+..+...+..+
T Consensus 294 ~~-~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~--------- 362 (719)
T 1z68_A 294 CP-KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGKWEAINI--------- 362 (719)
T ss_dssp CC-GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSSSCEEEE---------
T ss_pred eE-EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCceEEEEE---------
Confidence 22 222 46666666 7899999986554 44555 57778887766 33444444444333
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECC-----CcEEEEECCC--ccc-ccc----ccCcccCEEEEEEcCCCCE
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVWDIRT--QKL-KQD----LPGHADEVFAVDWSPDGEK 485 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-----~~v~iwd~~~--~~~-~~~----~~~h~~~V~~l~~s~dg~~ 485 (500)
.++ +++.|+..+.+ +.+++|.+.. +.. ... +.+|...+..+.|+|||++
T Consensus 363 ------------------~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~ 423 (719)
T 1z68_A 363 ------------------FRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKY 423 (719)
T ss_dssp ------------------EEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSS
T ss_pred ------------------EEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCE
Confidence 234 67767666654 7889998653 311 122 3346677889999999998
Q ss_pred EEE-EeCC--CcEEEec
Q 010816 486 VAS-GGKD--RVLKLWM 499 (500)
Q Consensus 486 l~s-~~~D--~~v~iW~ 499 (500)
++. ++.+ ..+++|+
T Consensus 424 l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 424 YALVCYGPGIPISTLHD 440 (719)
T ss_dssp EEEEECCBSSCEEEEEC
T ss_pred EEEEcCCCCCCeEEEEE
Confidence 874 4433 3455654
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=8e-21 Score=179.52 Aligned_cols=271 Identities=13% Similarity=0.200 Sum_probs=172.4
Q ss_pred EEEEEeCCCeEEEEeCC-CCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC-CcEEEEECC--CCe--EEEEec
Q 010816 164 HLVSGSKAGELQCWDPQ-TGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-GDARIWDVS--LRK--CVICLS 237 (500)
Q Consensus 164 ~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-g~v~iwd~~--~~~--~~~~~~ 237 (500)
++++++.|+.|++||+. +++........+...+.+++|+| +++.+++++.+ +.|++|++. +++ .+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-----DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECC-----CCCEEEEeecCCCeEEEEEecCCCCceeeccccc
Confidence 34455789999999985 33221111233555677788876 44567777776 999999997 444 334444
Q ss_pred CccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCC---eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 238 GHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQG---KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
.+. .+.+++|++++. +++++ .++.|++||+.++ +....+..+. .+.+++++++
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~d-------------------- 139 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD-GCHSANISPD-------------------- 139 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT-TBCCCEECTT--------------------
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC-CceEEEECCC--------------------
Confidence 443 678899999884 55554 5889999998433 3333333222 3444555543
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCce----eeec-ccCcEEEEEECCCCCEEEEE-eCCCcEE
Q 010816 313 MKKAALERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKT----RMTG-HQQLVNHVYFSPDGQWVASA-SFDKSIK 385 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~----~~~~-h~~~v~~l~~sp~g~~lasg-s~Dg~i~ 385 (500)
+..+++++ .++.|++||+........ .... ....+.+++|+|+|++|+++ ..++.|+
T Consensus 140 ----------------g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~ 203 (343)
T 1ri6_A 140 ----------------NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVD 203 (343)
T ss_dssp ----------------SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEE
T ss_pred ----------------CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEE
Confidence 23455555 899999999865222211 1222 23468899999999977555 4789999
Q ss_pred EEeCCC--CceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC-
Q 010816 386 LWNGTT--GKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR- 459 (500)
Q Consensus 386 lwd~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~- 459 (500)
+|++.. ++.. ..+... +..+ ........++|+|+|++|+++ ..|+.|++||+.
T Consensus 204 ~~~~~~~~g~~~~~~~~~~~-----------------~~~~----~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 204 VWELKDPHGNIECVQTLDMM-----------------PENF----SDTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp EEESSCTTSCCEEEEEEECS-----------------CTTC----CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEecCCCCcEEEEeecccc-----------------Cccc----cccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 999953 4331 111100 0000 000112235789999888754 478999999998
Q ss_pred -C--ccccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816 460 -T--QKLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM 499 (500)
Q Consensus 460 -~--~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~ 499 (500)
+ .+.+..+..+.. +.+++|+|+|++|++++ .|+.|.+|+
T Consensus 263 ~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 263 DGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp TSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred CCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEE
Confidence 2 334444444444 88999999999998887 689999994
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=5.9e-22 Score=207.05 Aligned_cols=306 Identities=12% Similarity=0.082 Sum_probs=192.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCccc---ceEEEEeeeeecCCCCceEEEEeCC---------
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK---WITGISWEPVHLNAPCRRFVSASKD--------- 219 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~s~s~d--------- 219 (500)
.+.+++|+|||+++++ +.||+|++||+.+++... .+.+|.. .+.+++|+| +++++++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~-~~~~~~~~~~~v~~~~~Sp-----Dg~~l~~~~~~~~~~~~~~~ 90 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV-LIEGKKIESLRAIRYEISP-----DREYALFSYNVEPIYQHSYT 90 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE-EECTTTTTTTTCSEEEECT-----TSSEEEEEESCCCCSSSCCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE-EeccccccccccceEEECC-----CCCEEEEEecCccceeecce
Confidence 3678899999997776 789999999999887543 3444543 488888877 56788888764
Q ss_pred CcEEEEECCCCeEEE--EecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceE------------
Q 010816 220 GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWV------------ 284 (500)
Q Consensus 220 g~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v------------ 284 (500)
+.+++||+.++++.. ...+|...+.+++|+||| .|+.++. +.|++||+.+++..+....+...+
T Consensus 91 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred eeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 778899999887622 223455558889999998 4666654 899999999887766555433322
Q ss_pred ------EEEEecCcce-eeeccccCCCCC-CCCHHHHHHHHHHhhhhhcCCCCcEEEEe------eCCCeEEEEcCCCCC
Q 010816 285 ------NSLALSTEYA-LRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPERLVSG------SDDFTMFLWEPAVSK 350 (500)
Q Consensus 285 ------~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~------s~d~~v~~wd~~~~~ 350 (500)
.+++++|+.. +.....+..... +.... .. ....+...-+.- ..+..|++||+....
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~ 239 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT---------YT-GSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT 239 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC---------CS-SSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeec---------cC-CcCCCcceeccCCCCCCCCCeeEEEEEECCCCc
Confidence 6788888764 222222211000 00000 00 000000000000 112379999986544
Q ss_pred CCceeeec------ccCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCceEEEEeCC-cccEEEEEeeeeeeecCC
Q 010816 351 QPKTRMTG------HQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGKFVAVFRGH-VGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 351 ~~~~~~~~------h~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~ 419 (500)
. ...+.. +...+..++|||||++|++.+. +..|++||+.++++...+..+ .+.+..
T Consensus 240 ~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~------------ 306 (723)
T 1xfd_A 240 H-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR------------ 306 (723)
T ss_dssp C-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC------------
T ss_pred e-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec------------
Confidence 2 123333 3567899999999999977654 357999999999876655432 221100
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEE--EECCC------cEEEEE-CCCcc--ccccccCcccCEEE-EEEcCCCCEEE
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLS--GSKDS------TLKVWD-IRTQK--LKQDLPGHADEVFA-VDWSPDGEKVA 487 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s--~s~d~------~v~iwd-~~~~~--~~~~~~~h~~~V~~-l~~s~dg~~l~ 487 (500)
....++|+|||+.|+. +..|+ .|.+|| ..+++ ....+..+...+.. ++|+|||++|+
T Consensus 307 -----------~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~ 375 (723)
T 1xfd_A 307 -----------QNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY 375 (723)
T ss_dssp -----------CCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred -----------cCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEE
Confidence 0012378999997775 45677 566777 34444 14455543344554 69999999998
Q ss_pred EEeCC---CcEEEec
Q 010816 488 SGGKD---RVLKLWM 499 (500)
Q Consensus 488 s~~~D---~~v~iW~ 499 (500)
..+.+ ++++||.
T Consensus 376 ~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 376 FLSTEDLPRRRQLYS 390 (723)
T ss_dssp EEESSSCTTCCEEEE
T ss_pred EEEcCCCCcceEEEE
Confidence 76655 7888885
No 147
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.88 E-value=1.5e-20 Score=178.09 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=188.2
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCccccccc
Q 010816 113 SVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
.++++++++++++++.+++|++||+.+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.......
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35678889999999999999999999988776665443 2578899999998664 556789999999988865432211
Q ss_pred Cc-----ccceEEEEeeeeecCCCCceEEEEeCC------------CcEEEEECCCCe---EEEEecCccccEEEEEeCC
Q 010816 191 GH-----KKWITGISWEPVHLNAPCRRFVSASKD------------GDARIWDVSLRK---CVICLSGHTLAVTCVKWGG 250 (500)
Q Consensus 191 ~~-----~~~v~~~~~~~~~~~~~~~~~~s~s~d------------g~v~iwd~~~~~---~~~~~~~h~~~v~~~~~~~ 250 (500)
.+ ...+.++.|+| +++++++++.+ +.|.+||+.+++ .+..+..+ ..+.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~ 157 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISP-----DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-RQVYLMRAAD 157 (349)
T ss_dssp CCSTTEEEECSSCEEECT-----TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC-SSCCCEEECT
T ss_pred ccccccccccccceEECC-----CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC-CcccceeECC
Confidence 22 22355666665 55677777755 899999998743 23333333 3577889999
Q ss_pred CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCc------------------------eEEEEEecCcceeeeccccCCCCC
Q 010816 251 DGVIYTGSQDCTIKVWETTQGKLIRELKGHGH------------------------WVNSLALSTEYALRTGAFDHTGKQ 306 (500)
Q Consensus 251 ~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~~~~~~~ 306 (500)
++.+++++. .|.+||..+++....+..+.. ....+++.++... +..
T Consensus 158 dg~l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----~~~--- 227 (349)
T 1jmx_B 158 DGSLYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ-----DPA--- 227 (349)
T ss_dssp TSCEEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC------------C---
T ss_pred CCcEEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcC-----Ccc---
Confidence 988776544 499999999887776543210 0011111110000 000
Q ss_pred CCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEE
Q 010816 307 YSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIK 385 (500)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~ 385 (500)
........+.....++.+.+|+. ..+...+..++|+| +|++++++ ++.|+
T Consensus 228 -----------------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 228 -----------------TADLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRSPKDPNQIYGV--LNRLA 278 (349)
T ss_dssp -----------------CCEEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEECSSCTTEEEEE--ESEEE
T ss_pred -----------------ccccceeEEEEeccCCcEEeccc----------ccCCCcceeeEecCCCCCEEEEE--cCeEE
Confidence 00000001112233444555543 23455688999999 99999888 88999
Q ss_pred EEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 386 LWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 386 lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
+||+.+++.+..+..... +.. ++|+|+|++|++++.++.|++||+++++.+.
T Consensus 279 ~~d~~~~~~~~~~~~~~~-~~~---------------------------~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~ 330 (349)
T 1jmx_B 279 KYDLKQRKLIKAANLDHT-YYC---------------------------VAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 330 (349)
T ss_dssp EEETTTTEEEEEEECSSC-CCE---------------------------EEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred EEECccCeEEEEEcCCCC-ccc---------------------------eEECCCCCEEEEecCCCeEEEEeccccceee
Confidence 999999988776653221 122 3679999988888889999999999888776
Q ss_pred cccCc
Q 010816 466 DLPGH 470 (500)
Q Consensus 466 ~~~~h 470 (500)
.++..
T Consensus 331 ~~~~~ 335 (349)
T 1jmx_B 331 NIKLP 335 (349)
T ss_dssp EEECS
T ss_pred eeecC
Confidence 65433
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.4e-21 Score=175.14 Aligned_cols=234 Identities=19% Similarity=0.222 Sum_probs=164.6
Q ss_pred cccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCC-CceeEEecCC-CCCEEEEEEcCCCCEEEEEe--CCCeEEEE-
Q 010816 103 TIAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNT-QTPMFKCTGH-KNWVLCIAWSADGKHLVSGS--KAGELQCW- 177 (500)
Q Consensus 103 ~~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~-~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~--~d~~i~~w- 177 (500)
.+.+|.+.|.+++|+|+|++|++++ ++.|++||+.+ ++......+| ...+.+++|+|+|++|++++ .++..++|
T Consensus 36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3456788999999999999999987 78999999998 7766555555 36789999999999999998 33455555
Q ss_pred -eCCCCCcccccccCcccceEEEEeeeeecCCCCceEE-EEeCCCcEEEEECCC-CeEEEEecCccccEEEEEeCCCCe-
Q 010816 178 -DPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSL-RKCVICLSGHTLAVTCVKWGGDGV- 253 (500)
Q Consensus 178 -d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-s~s~dg~v~iwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~- 253 (500)
+..+++.. .+..+. .+..+.|+| +++.++ +++.|+.+++|++.. ......+..|...+.++.|++++.
T Consensus 115 ~~~~~~~~~--~~~~~~-~~~~~~~sp-----dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 186 (297)
T 2ojh_A 115 LPSTGGTPR--LMTKNL-PSYWHGWSP-----DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRW 186 (297)
T ss_dssp EETTCCCCE--ECCSSS-SEEEEEECT-----TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSE
T ss_pred EECCCCceE--EeecCC-CccceEECC-----CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCE
Confidence 44554422 233332 377778876 345555 788899999998642 233455667778899999999874
Q ss_pred EEEEe-CCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 254 IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 254 l~t~~-~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
++.++ .++.+++|++. .+...
T Consensus 187 l~~~~~~~~~~~i~~~~~~~~~~--------------------------------------------------------- 209 (297)
T 2ojh_A 187 IYFNSSRTGQMQIWRVRVDGSSV--------------------------------------------------------- 209 (297)
T ss_dssp EEEEECTTSSCEEEEEETTSSCE---------------------------------------------------------
T ss_pred EEEEecCCCCccEEEECCCCCCc---------------------------------------------------------
Confidence 44444 58888888753 11111
Q ss_pred EEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-----------CcEEEEeCCCCceEE--EE
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----------KSIKLWNGTTGKFVA--VF 398 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-----------g~i~lwd~~~~~~~~--~~ 398 (500)
..+..|...+.+++|+|+|++|++++.+ +.|++||+.+++... .+
T Consensus 210 ----------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 267 (297)
T 2ojh_A 210 ----------------------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDL 267 (297)
T ss_dssp ----------------------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEE
T ss_pred ----------------------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeecc
Confidence 1122334457789999999999988876 569999998886533 23
Q ss_pred eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816 399 RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (500)
Q Consensus 399 ~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~ 451 (500)
.+|...+.. ++|+|+|++|++++.|.
T Consensus 268 ~~~~~~~~~---------------------------~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 268 FGGQGTMNS---------------------------PNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EESTTTSCS---------------------------CCBCTTSSEEEEEEECC
T ss_pred CCCCccccc---------------------------ceECCCCCEEEEEEecc
Confidence 344443322 36899999999887653
No 149
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.86 E-value=1.6e-19 Score=173.95 Aligned_cols=296 Identities=13% Similarity=0.117 Sum_probs=194.8
Q ss_pred EEeCCCCceeEEecCCCCCEEE-----EEEcCCCCEEEEEeC-CC--eEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816 134 LWDLNTQTPMFKCTGHKNWVLC-----IAWSADGKHLVSGSK-AG--ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (500)
Q Consensus 134 iwd~~~~~~~~~~~~h~~~v~~-----v~~s~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (500)
.+|..++..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++... ...++...+.++.|+|
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-lt~~~~~~~~~~~~sp-- 90 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-LTEGRGDNTFGGFLSP-- 90 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-CCCSSCBCSSSCEECT--
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-eeeCCCCCccceEEcC--
Confidence 3466777777888877766666 889999999998887 66 48888988876543 3344544444566766
Q ss_pred cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEE--eCCCCeEEEE-----------------------eCC
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVK--WGGDGVIYTG-----------------------SQD 260 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~--~~~~~~l~t~-----------------------~~d 260 (500)
++++++.++.++.+++||+.+++.......+...+.... +++++.++.+ ..+
T Consensus 91 ---dg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T 3pe7_A 91 ---DDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPC 167 (388)
T ss_dssp ---TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCC
T ss_pred ---CCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCc
Confidence 567899999999999999999887666665555554444 3777755442 245
Q ss_pred CeEEEEeCCCCeeEEEeecCCceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC--
Q 010816 261 CTIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-- 337 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-- 337 (500)
..|.+||+.+++... +..+...+..+.++| +.. .++..+.
T Consensus 168 ~~l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~------------------------------------~l~~~~~~~ 210 (388)
T 3pe7_A 168 CRLMRVDLKTGESTV-ILQENQWLGHPIYRPYDDS------------------------------------TVAFCHEGP 210 (388)
T ss_dssp EEEEEEETTTCCEEE-EEEESSCEEEEEEETTEEE------------------------------------EEEEEECSC
T ss_pred ceEEEEECCCCceEE-eecCCccccccEECCCCCC------------------------------------EEEEEEecC
Confidence 789999999886543 334555677888887 632 3333332
Q ss_pred ----CCeEEEEcCCCCCCCceeeeccc--CcEEEEEECCCCCEEEEEeCC-C----cEEEEeCCCCceEE--EEeCCccc
Q 010816 338 ----DFTMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFD-K----SIKLWNGTTGKFVA--VFRGHVGP 404 (500)
Q Consensus 338 ----d~~v~~wd~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~lasgs~D-g----~i~lwd~~~~~~~~--~~~~h~~~ 404 (500)
...|.++|..... ...+..+. ..+..++|+|||+.|+..+.+ + .|++||+.+++... .+.++.
T Consensus 211 ~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~-- 286 (388)
T 3pe7_A 211 HDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACS-- 286 (388)
T ss_dssp TTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEE--
T ss_pred CCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCce--
Confidence 3367777754322 22333333 357789999999977665442 2 39999999987532 222110
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE---------ECCCcEEEEECCCccccccccCccc---
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG---------SKDSTLKVWDIRTQKLKQDLPGHAD--- 472 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~---------s~d~~v~iwd~~~~~~~~~~~~h~~--- 472 (500)
... ......+|+|||+.|+.. ..+..|++||+.+++. ..+..|..
T Consensus 287 --~~~--------------------~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~ 343 (388)
T 3pe7_A 287 --HLM--------------------SNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWK 343 (388)
T ss_dssp --EEE--------------------ECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCC
T ss_pred --eee--------------------ecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCccc
Confidence 000 000112589999988854 4566899999988765 33444544
Q ss_pred --------CEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816 473 --------EVFAVDWSPDGEKVASGG-KDRVLKLWM 499 (500)
Q Consensus 473 --------~V~~l~~s~dg~~l~s~~-~D~~v~iW~ 499 (500)
.+..++|+|||++|+.++ .++...||.
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 577889999999988765 477777774
No 150
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=5.2e-20 Score=173.46 Aligned_cols=261 Identities=12% Similarity=0.079 Sum_probs=179.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCccc-ceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECCCCeEEEEecC-c
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKK-WITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSG-H 239 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~~~~~~~~~~~-h 239 (500)
++|++++.++.|.+||+.+++.......++.. .+..+.|+| +++ .+++++.++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~-----dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~ 76 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAP-----GGRIAYATVNKSESLVKIDLVTGETLGRIDLST 76 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECT-----TSSEEEEEETTTTEEEEEETTTCCEEEEEECCB
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcC-----CCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCC
Confidence 47899999999999999988765433223322 356777766 333 456677789999999999887765542 2
Q ss_pred ----cccEEEEEeCCCC-eEEEEe------------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccC
Q 010816 240 ----TLAVTCVKWGGDG-VIYTGS------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDH 302 (500)
Q Consensus 240 ----~~~v~~~~~~~~~-~l~t~~------------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 302 (500)
...+.+++|++++ .+++++ .++.|.+||+.+++.+..+.. ...+..++++++
T Consensus 77 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~d---------- 145 (337)
T 1pby_B 77 PEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARD---------- 145 (337)
T ss_dssp TTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTT----------
T ss_pred cccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCC----------
Confidence 2245678999988 566665 579999999999887776654 333555666554
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-
Q 010816 303 TGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD- 381 (500)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D- 381 (500)
+..++.+ ++.|++||+..... ...+..+. ....+.|+|+|..++..+.+
T Consensus 146 --------------------------g~~l~~~--~~~i~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~ 195 (337)
T 1pby_B 146 --------------------------GSKLYGL--GRDLHVMDPEAGTL-VEDKPIQS-WEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp --------------------------SSCEEEE--SSSEEEEETTTTEE-EEEECSTT-TTTTTBCCCBCCCCCCCCTTT
T ss_pred --------------------------CCEEEEe--CCeEEEEECCCCcE-eeeeeccc-cCCCceeCCCccEEeeeccCC
Confidence 2335555 67899999765432 22222221 00123789999876554433
Q ss_pred C-----------------------cEEEEeCCCCceEE-EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 382 K-----------------------SIKLWNGTTGKFVA-VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 382 g-----------------------~i~lwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
+ .|.+||+.+++... .+..+...+.. ++|
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---------------------------~~~ 248 (337)
T 1pby_B 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFS---------------------------TAV 248 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEE---------------------------EEE
T ss_pred CceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceee---------------------------EEE
Confidence 2 46889998887641 11222222222 368
Q ss_pred cCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 438 SADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 438 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
+|+|++++++ ++.|++||+.+++....+..+ ..+.+++|+|||++|++++.|+.|++|+
T Consensus 249 s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d 307 (337)
T 1pby_B 249 NPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp CTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred CCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence 9999999988 799999999998877666543 4578999999999999999999999997
No 151
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=5.2e-20 Score=179.27 Aligned_cols=179 Identities=17% Similarity=0.153 Sum_probs=140.9
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCC----------ceeE-----EecCCCCCEEEEEEcCCCCEEE----EE
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQ----------TPMF-----KCTGHKNWVLCIAWSADGKHLV----SG 168 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~----------~~~~-----~~~~h~~~v~~v~~s~~~~~l~----s~ 168 (500)
...+..+++++++.++++++.|+ ++||+.... ..+. ....|...|.+++|+|+|++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 45688999999999999999988 899874210 0111 1123567899999999999999 88
Q ss_pred eCCCeEEEEeCCCC-----Ccc-----cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816 169 SKAGELQCWDPQTG-----KPS-----GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (500)
Q Consensus 169 ~~d~~i~~wd~~~~-----~~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 238 (500)
+.|+.|++||+.++ +.. ...+.+|...|.+++|+|.. ...|++++.||+|++||++++..+....+
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~----~~~las~s~Dg~v~iwD~~~~~~~~~~~~ 190 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTV----PSMVAVCLADGSIAVLQVTETVKVCATLP 190 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSC----TTEEEEEETTSCEEEEEESSSEEEEEEEC
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCC----CCEEEEEECCCeEEEEEcCCCcceeeccC
Confidence 99999999998654 111 23466799999999999842 35899999999999999999988777788
Q ss_pred ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecC-------CceEEEEEecCc
Q 010816 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGH-------GHWVNSLALSTE 292 (500)
Q Consensus 239 h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~-------~~~v~~~~~~~~ 292 (500)
|...|.+++|++++ .|++|+.||+|++||.+ ++....+..+ ...+.++.++++
T Consensus 191 ~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~ 251 (434)
T 2oit_A 191 STVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGT 251 (434)
T ss_dssp GGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEET
T ss_pred CCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecC
Confidence 99999999999987 68899999999999998 5555555433 236778877764
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=7.3e-19 Score=166.56 Aligned_cols=269 Identities=17% Similarity=0.167 Sum_probs=169.0
Q ss_pred CCCcEEEEeCC--CCceeE-EecCCCCCEEEEEEcCCCCEEEEEeC---CCeEEEEeCCCCCccc-ccccCcccceEEEE
Q 010816 128 GDTTVRLWDLN--TQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK---AGELQCWDPQTGKPSG-NPLSGHKKWITGIS 200 (500)
Q Consensus 128 ~d~~i~iwd~~--~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~---d~~i~~wd~~~~~~~~-~~~~~~~~~v~~~~ 200 (500)
.++.|.+|+++ +++... ....+...+..++|+|||+ |++++. ++.|.+||+.+++... ..+..+...+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 35668888765 343322 2334556778899999999 655554 6899999997665321 11233455566777
Q ss_pred eeeeecCCCCceEEEEe-CCCcEEEEECCC-C--eEEEEecC---------ccccEEEEEeCCCCeEEE-EeCCCeEEEE
Q 010816 201 WEPVHLNAPCRRFVSAS-KDGDARIWDVSL-R--KCVICLSG---------HTLAVTCVKWGGDGVIYT-GSQDCTIKVW 266 (500)
Q Consensus 201 ~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~-~--~~~~~~~~---------h~~~v~~~~~~~~~~l~t-~~~dg~i~lw 266 (500)
|+| +++.+++++ .++.+++|++.. + ..+..+.. +...+.+++|++++.+++ ...++.|++|
T Consensus 93 ~sp-----dg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~ 167 (347)
T 3hfq_A 93 VDE-----ARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVY 167 (347)
T ss_dssp EET-----TTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred ECC-----CCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEE
Confidence 766 455677666 789999999962 2 22332221 123478899999886554 4457889999
Q ss_pred eCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 267 ETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 267 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
|+. +++..... .+ .
T Consensus 168 ~~~~~g~~~~~~--------~~---------------------------------------------------------~ 182 (347)
T 3hfq_A 168 NVSDAGQLSEQS--------VL---------------------------------------------------------T 182 (347)
T ss_dssp EECTTSCEEEEE--------EE---------------------------------------------------------E
T ss_pred EECCCCcEEEee--------eE---------------------------------------------------------E
Confidence 986 33221100 00 0
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCC--CceE--EEEeCCcccEEEEEeeeeeeecCCC
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT--GKFV--AVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~--~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
. .....+..++|+|||++|++ +..++.|++|++.. ++.. ..+......
T Consensus 183 ~-----------~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------------- 235 (347)
T 3hfq_A 183 M-----------EAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPAD---------------- 235 (347)
T ss_dssp C-----------CTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTT----------------
T ss_pred c-----------CCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCC----------------
Confidence 0 00123567999999996655 56688999999764 4432 111111100
Q ss_pred CceeeeeccccceeeEEcCCCCEE-EEEECCCcEEEEECCC---ccccccccCcccCEEEEEEcCCCCEEEEEeCC-CcE
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLL-LSGSKDSTLKVWDIRT---QKLKQDLPGHADEVFAVDWSPDGEKVASGGKD-RVL 495 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l-~s~s~d~~v~iwd~~~---~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D-~~v 495 (500)
. ........++|+|+|++| ++...++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+ +.|
T Consensus 236 -~----~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v 310 (347)
T 3hfq_A 236 -Y----TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNA 310 (347)
T ss_dssp -C----CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEE
T ss_pred -C----CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcE
Confidence 0 000112335789999977 4556789999999873 24445556666678899999999999888765 899
Q ss_pred EEec
Q 010816 496 KLWM 499 (500)
Q Consensus 496 ~iW~ 499 (500)
.+|.
T Consensus 311 ~v~~ 314 (347)
T 3hfq_A 311 TLYA 314 (347)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9993
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.85 E-value=7.5e-19 Score=165.25 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=167.0
Q ss_pred CCcccEEEEEEcCCCCeEEEEeC-CCcEEEEeCCCCce-eEEecCCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEeCC
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSG-DTTVRLWDLNTQTP-MFKCTGHKNWVLCIAWSADGKHLVSGSKAG---ELQCWDPQ 180 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~---~i~~wd~~ 180 (500)
.+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+..+..+++|+|+|++|+++..++ .|.+||+.
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 345556 9999999997776665 89999999998887 666666666666699999999999655553 89999998
Q ss_pred CCCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCc-EEEEECCCCeEEE----EecCccccEEEEEeCCCCe-
Q 010816 181 TGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD-ARIWDVSLRKCVI----CLSGHTLAVTCVKWGGDGV- 253 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~-v~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~~~- 253 (500)
+++.... +.. .....++.|+| +++ .+++...++. +++|++.....+. ...........+.|++++.
T Consensus 117 ~~~~~~~-~~~-~~~~~~~~~sp-----dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 117 KNKFIST-IPI-PYDAVGIAISP-----NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNF 189 (331)
T ss_dssp TTEEEEE-EEC-CTTEEEEEECT-----TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSE
T ss_pred CCCeEEE-EEC-CCCccceEECC-----CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCE
Confidence 8865432 222 23346788876 334 4555566688 9999987543321 1113334578899999984
Q ss_pred EE-EEeCCCeEEEEeCCCCee---EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 254 IY-TGSQDCTIKVWETTQGKL---IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 254 l~-t~~~dg~i~lwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
++ ++..++.|++||+.+++. +..+.
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--------------------------------------------------- 218 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVG--------------------------------------------------- 218 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEE---------------------------------------------------
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeecc---------------------------------------------------
Confidence 44 455688999999877654 21110
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCce--EEEEeCCcccEE
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKF--VAVFRGHVGPVY 406 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~--~~~~~~h~~~v~ 406 (500)
....+..++|+|||++|+.++ .++.|.+||..+++. +..+..+..
T Consensus 219 -----------------------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--- 266 (331)
T 3u4y_A 219 -----------------------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLL--- 266 (331)
T ss_dssp -----------------------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCC---
T ss_pred -----------------------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccc---
Confidence 012245688999999776554 578899999999876 332221100
Q ss_pred EEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCCccc
Q 010816 407 QIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRTQKL 463 (500)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~~~~ 463 (500)
..+ ........++|+|+|++|++++. ++.|++||+.....
T Consensus 267 ----------~~~-------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 267 ----------IDP-------RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ----------CCC-------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ----------cCC-------CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 000 00001123578999998876665 56999999987554
No 154
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=2e-18 Score=180.38 Aligned_cols=306 Identities=11% Similarity=0.072 Sum_probs=197.5
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---------CeEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---------GELQ 175 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~~~~l~s~~~d---------~~i~ 175 (500)
...+++|+|||++++++ |++|++||+.++.+...+.+|... ...++|||||++|+.++.+ +.+.
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~ 95 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD 95 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence 35578999999999986 999999999999887777777643 2347899999999998876 5567
Q ss_pred EEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE-ecCccccE-----------
Q 010816 176 CWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC-LSGHTLAV----------- 243 (500)
Q Consensus 176 ~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~-~~~h~~~v----------- 243 (500)
+||+.+++.. .+..|...+....|+| +++.++.+ .|+.|++||+.+++.... ..++...+
T Consensus 96 ~~d~~~~~~~--~l~~~~~~~~~~~~SP-----dG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 96 IYDLNKRQLI--TEERIPNNTQWVTWSP-----VGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEETTTTEEC--CSSCCCTTEEEEEECS-----STTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHH
T ss_pred EEECCCCcEE--EcccCCCcceeeEECC-----CCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccc
Confidence 9999998754 3566777888999987 55677776 578999999988765542 22333323
Q ss_pred ------EEEEeCCCCe-EEEEeCCC------------------------------------eEEEEeCCC---Ce--eEE
Q 010816 244 ------TCVKWGGDGV-IYTGSQDC------------------------------------TIKVWETTQ---GK--LIR 275 (500)
Q Consensus 244 ------~~~~~~~~~~-l~t~~~dg------------------------------------~i~lwd~~~---~~--~~~ 275 (500)
..+.|+|||. |+.++.|. .|++||+.+ ++ ...
T Consensus 168 e~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~ 247 (740)
T 4a5s_A 168 EVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI 247 (740)
T ss_dssp HTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred hhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence 2478999984 55554221 477788877 62 222
Q ss_pred Eee------cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe----eCCCeEEEEc
Q 010816 276 ELK------GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG----SDDFTMFLWE 345 (500)
Q Consensus 276 ~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----s~d~~v~~wd 345 (500)
.+. ++...+..++++|+.. .++.. +.+..|++||
T Consensus 248 ~l~~~~~~~~~~~~~~~~~wspdg~------------------------------------~~~~~~~r~~~~~~i~~~d 291 (740)
T 4a5s_A 248 QITAPASMLIGDHYLCDVTWATQER------------------------------------ISLQWLRRIQNYSVMDICD 291 (740)
T ss_dssp EECCCHHHHTSCEEEEEEEEEETTE------------------------------------EEEEEEESSTTEEEEEEEE
T ss_pred EecCCccCCCCCeEEEEEEEeCCCe------------------------------------EEEEEeCCCCCEEEEEEEE
Confidence 332 2666777788877642 12221 2344789999
Q ss_pred CCCCC----C-Cceee--ecccCcEE-----EEEECCCCCEEE-EEeCC---CcEEEEeCCCCceEEEEeCCcccEEEEE
Q 010816 346 PAVSK----Q-PKTRM--TGHQQLVN-----HVYFSPDGQWVA-SASFD---KSIKLWNGTTGKFVAVFRGHVGPVYQIR 409 (500)
Q Consensus 346 ~~~~~----~-~~~~~--~~h~~~v~-----~l~~sp~g~~la-sgs~D---g~i~lwd~~~~~~~~~~~~h~~~v~~~~ 409 (500)
+.... . ....+ .+|..+|. .++|+|||+.|+ ..+.+ ..|++||..+++......+ ...+..+
T Consensus 292 ~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g-~~~v~~~- 369 (740)
T 4a5s_A 292 YDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKG-TWEVIGI- 369 (740)
T ss_dssp EETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCS-SSCEEEE-
T ss_pred CCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccC-CEEEEEE-
Confidence 76544 1 11122 45665554 788999999887 66543 4688999887665433222 2333222
Q ss_pred eeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-----CcEEEE--ECCCcccccccc----CcccCEEEEE
Q 010816 410 FELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-----STLKVW--DIRTQKLKQDLP----GHADEVFAVD 478 (500)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-----~~v~iw--d~~~~~~~~~~~----~h~~~V~~l~ 478 (500)
+.++++.++..+.. +..+|| ++..++....+. +....+..+.
T Consensus 370 ---------------------------~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~ 422 (740)
T 4a5s_A 370 ---------------------------EALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVS 422 (740)
T ss_dssp ---------------------------EEECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEE
T ss_pred ---------------------------EEEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEE
Confidence 12345555444332 334444 454443322222 2345678999
Q ss_pred EcCCCCEEEEEe
Q 010816 479 WSPDGEKVASGG 490 (500)
Q Consensus 479 ~s~dg~~l~s~~ 490 (500)
|||||++++...
T Consensus 423 ~S~dg~~~~~~~ 434 (740)
T 4a5s_A 423 FSKEAKYYQLRC 434 (740)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCEEEEEe
Confidence 999999876543
No 155
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.83 E-value=7.8e-19 Score=170.94 Aligned_cols=212 Identities=17% Similarity=0.105 Sum_probs=150.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc----------cc----ccccCcccc
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP----------SG----NPLSGHKKW 195 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~----------~~----~~~~~~~~~ 195 (500)
+.+++|+.... .+...+..+++++++.++++++.|+ +++|+...-.. .. .....+...
T Consensus 23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 2oit_A 23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP 94 (434)
T ss_dssp CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence 35777764321 1234578899999999999999888 88886421100 00 001124456
Q ss_pred eEEEEeeeeecCCCCceEE----EEeCCCcEEEEECCCC--------e---EEEEecCccccEEEEEeCCC--CeEEEEe
Q 010816 196 ITGISWEPVHLNAPCRRFV----SASKDGDARIWDVSLR--------K---CVICLSGHTLAVTCVKWGGD--GVIYTGS 258 (500)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~----s~s~dg~v~iwd~~~~--------~---~~~~~~~h~~~v~~~~~~~~--~~l~t~~ 258 (500)
|.+++|+| ++..++ +|+.|+.|++||+.+. + .+..+.+|...|.+++|+++ ..|++++
T Consensus 95 v~~l~~sp-----dg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 95 IHHLALSC-----DNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp EEEEEECT-----TSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred ccEEEEcC-----CCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 89999987 345777 7889999999998654 1 24566789999999999986 3688999
Q ss_pred CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 259 QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.||+|++||++++....
T Consensus 170 ~Dg~v~iwD~~~~~~~~--------------------------------------------------------------- 186 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVC--------------------------------------------------------------- 186 (434)
T ss_dssp TTSCEEEEEESSSEEEE---------------------------------------------------------------
T ss_pred CCCeEEEEEcCCCccee---------------------------------------------------------------
Confidence 99999999987653211
Q ss_pred CeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-------cEEEEEee
Q 010816 339 FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG-------PVYQIRFE 411 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-------~v~~~~~~ 411 (500)
...+|...|.+++|+|+|++|++|+.||.|++||.+ ++....+..|.. .+.+
T Consensus 187 ----------------~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~---- 245 (434)
T 2oit_A 187 ----------------ATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLD---- 245 (434)
T ss_dssp ----------------EEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEE----
T ss_pred ----------------eccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEE----
Confidence 112456679999999999999999999999999998 666555554422 3333
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EECCC------cEEEEECCCc
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GSKDS------TLKVWDIRTQ 461 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s~d~------~v~iwd~~~~ 461 (500)
+.|++++.++++ ++.|| .+++|++...
T Consensus 246 -----------------------v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 -----------------------VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp -----------------------EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred -----------------------EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 367888877765 34443 3899999864
No 156
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=3.1e-17 Score=156.22 Aligned_cols=265 Identities=12% Similarity=0.114 Sum_probs=170.0
Q ss_pred CcccEEEEEEcCCCCeEEEEeCC----CcEEEEeCCC--Cc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGD----TTVRLWDLNT--QT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCW 177 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d----~~i~iwd~~~--~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~w 177 (500)
|......++|+|||++|++++.+ +.|.+|++.. +. .+.....+......+++ ++++|++++ .++.|.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 45667789999999999999876 7999998865 32 22333445567788888 888887776 57899999
Q ss_pred eCCCCCcccccc-------------cCcccceEEEEeeeeecCCCCceE-EEEeCCCcEEEEECCCCeE-----------
Q 010816 178 DPQTGKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRF-VSASKDGDARIWDVSLRKC----------- 232 (500)
Q Consensus 178 d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~-~s~s~dg~v~iwd~~~~~~----------- 232 (500)
++.......... ..+...+.++.|+| +++++ +++..++.|++|++.....
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-----dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~ 200 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-----DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG 200 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC-----CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence 987543222110 11122345677766 44544 4555688999998875431
Q ss_pred --EEEecCccccEEEEEeCCCCe-EEEEe-CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 233 --VICLSGHTLAVTCVKWGGDGV-IYTGS-QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 233 --~~~~~~h~~~v~~~~~~~~~~-l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
......+......++|++++. +++++ .++.|.+||+.+++..... .+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~--------~~~-------------------- 252 (361)
T 3scy_A 201 TPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQ--------TVA-------------------- 252 (361)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEE--------EEE--------------------
T ss_pred cccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeE--------EEe--------------------
Confidence 111223345567899999984 65555 6899999998765421100 000
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC--CcEEE
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--KSIKL 386 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D--g~i~l 386 (500)
....+......++|+|||++|+++..+ +.|.+
T Consensus 253 ----------------------------------------------~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v 286 (361)
T 3scy_A 253 ----------------------------------------------ADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAI 286 (361)
T ss_dssp ----------------------------------------------SCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEE
T ss_pred ----------------------------------------------cCCCCCCCcccEEECCCCCEEEEECCCCCCEEEE
Confidence 000112335789999999988766654 89999
Q ss_pred EeCC--CCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEE--ECC
Q 010816 387 WNGT--TGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVW--DIR 459 (500)
Q Consensus 387 wd~~--~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iw--d~~ 459 (500)
|++. +++. +..+.. .. ....++|+|+|++|++++ .++.|.+| |.+
T Consensus 287 ~~~~~~~g~~~~~~~~~~-g~---------------------------~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~ 338 (361)
T 3scy_A 287 FKVDETNGTLTKVGYQLT-GI---------------------------HPRNFIITPNGKYLLVACRDTNVIQIFERDQA 338 (361)
T ss_dssp EEECTTTCCEEEEEEEEC-SS---------------------------CCCEEEECTTSCEEEEEETTTTEEEEEEECTT
T ss_pred EEEcCCCCcEEEeeEecC-CC---------------------------CCceEEECCCCCEEEEEECCCCCEEEEEEECC
Confidence 9985 4442 222221 11 112347899999999888 67899996 555
Q ss_pred Cccccccc-cCcccCEEEEEEc
Q 010816 460 TQKLKQDL-PGHADEVFAVDWS 480 (500)
Q Consensus 460 ~~~~~~~~-~~h~~~V~~l~~s 480 (500)
++++.... ..+...+.++.|.
T Consensus 339 ~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 339 TGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp TCCEEECSCCEECSSEEEEEEE
T ss_pred CCcEeecceeeeCCCCeEEEEc
Confidence 66665433 2245578888885
No 157
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.83 E-value=5.8e-18 Score=160.56 Aligned_cols=235 Identities=11% Similarity=0.069 Sum_probs=170.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCc-eEEEEeCCCc
Q 010816 150 KNWVLCIAWSADGKHLVSGSK-------AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGD 221 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~-------d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~ 221 (500)
...+..++|+|++++|++++. ++.|.+||..+++...... ......++.|.| +++ .+++...++.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~-----dg~~l~v~~~~~~~ 112 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--NDLKPFGATINN-----TTQTLWFGNTVNSA 112 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--ESSCCCSEEEET-----TTTEEEEEETTTTE
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--cCCCcceEEECC-----CCCEEEEEecCCCE
Confidence 446789999999999888774 5689999999887543221 122345666665 334 4566677899
Q ss_pred EEEEECCCCeEEEEecCccc---------cEEEEEeCCCC-eEEEEe--CCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816 222 ARIWDVSLRKCVICLSGHTL---------AVTCVKWGGDG-VIYTGS--QDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (500)
Q Consensus 222 v~iwd~~~~~~~~~~~~h~~---------~v~~~~~~~~~-~l~t~~--~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~ 289 (500)
|.+||..+++.+..+..+.. .+.++.|++++ .+++++ .++.|.+||..+++.+..+..
T Consensus 113 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~---------- 182 (353)
T 3vgz_A 113 VTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN---------- 182 (353)
T ss_dssp EEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC----------
T ss_pred EEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC----------
Confidence 99999999988777665432 26788999886 355544 478899999887765443220
Q ss_pred cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC
Q 010816 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS 369 (500)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s 369 (500)
+...+.+++|+
T Consensus 183 ---------------------------------------------------------------------~~~~~~~~~~s 193 (353)
T 3vgz_A 183 ---------------------------------------------------------------------TGKMSTGLALD 193 (353)
T ss_dssp ---------------------------------------------------------------------CCTTCCCCEEE
T ss_pred ---------------------------------------------------------------------CCCccceEEEC
Confidence 01123457899
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceEEEEeC----CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816 370 PDGQWVASASFDKSIKLWNGTTGKFVAVFRG----HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (500)
Q Consensus 370 p~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 445 (500)
|+|++|++++.++.|.+||..+++.+..+.. +...... ++|+|+|++++
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~s~dg~~l~ 246 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN---------------------------ISLDTARQRAF 246 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE---------------------------EEEETTTTEEE
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce---------------------------EEECCCCCEEE
Confidence 9999999999999999999999988776653 2222222 36799999877
Q ss_pred EEEC-CCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816 446 SGSK-DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM 499 (500)
Q Consensus 446 s~s~-d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~ 499 (500)
.++. ++.|.+||..+++....+..... ..++|+|||++++.++ .++.|.+|+
T Consensus 247 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNILAKVAAPES--LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp EEESSSSEEEEEETTTCCEEEEEECSSC--CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEeCCCCEEEEEECCCCcEEEEEEcCCC--ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 7765 48999999999888766654332 5789999999766555 789999997
No 158
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.82 E-value=4e-18 Score=161.46 Aligned_cols=254 Identities=14% Similarity=0.171 Sum_probs=162.9
Q ss_pred CcccEEEEEEcCCCCeEEEEeC---CCcEEEEeCCCCc--eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCC
Q 010816 107 HTEAVLSVAFSPDGRQLASGSG---DTTVRLWDLNTQT--PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQ 180 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~---d~~i~iwd~~~~~--~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~ 180 (500)
+...+..++|+|||+ |++++. ++.|.+||+.++. .+..+..+...+..++|+|||++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 345667899999999 555543 6899999997665 3334445677889999999999998887 67999999985
Q ss_pred C-CCcccc-cc--cC-------cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-CCeEEE--EecCc-cccEEE
Q 010816 181 T-GKPSGN-PL--SG-------HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-LRKCVI--CLSGH-TLAVTC 245 (500)
Q Consensus 181 ~-~~~~~~-~~--~~-------~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-~~~~~~--~~~~h-~~~v~~ 245 (500)
. +..... .+ .+ +...+.++.|+| +++.+++...++.|++||+. .++... .+..+ ......
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp-----dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP-----DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT-----TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECC-----CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCce
Confidence 3 321110 00 00 112366677766 44566677778899999998 444322 12222 235677
Q ss_pred EEeCCCCe-EEE-EeCCCeEEEEeCCC--CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 246 VKWGGDGV-IYT-GSQDCTIKVWETTQ--GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 246 ~~~~~~~~-l~t-~~~dg~i~lwd~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
++|++++. +++ +..++.|++|++.. ++.... ..+...
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~--------~~~~~~------------------------------- 232 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL--------GIVKTI------------------------------- 232 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE--------EEEESS-------------------------------
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe--------eeeeec-------------------------------
Confidence 99999985 544 56788999998753 322110 000000
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCC-C--ceEEE
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTT-G--KFVAV 397 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~-~--~~~~~ 397 (500)
... . .....+..++|+|||++| ++...++.|.+|++.. + +.+..
T Consensus 233 -------------------------~~~------~-~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~ 280 (347)
T 3hfq_A 233 -------------------------PAD------Y-TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ 280 (347)
T ss_dssp -------------------------CTT------C-CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred -------------------------CCC------C-CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence 000 0 011347789999999977 5666789999999863 2 33333
Q ss_pred EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC-CcEEEE--ECCCcccc
Q 010816 398 FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD-STLKVW--DIRTQKLK 464 (500)
Q Consensus 398 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d-~~v~iw--d~~~~~~~ 464 (500)
+..+.... ..++|+|+|++|++++.+ +.|.+| |..++++.
T Consensus 281 ~~~~~~~~---------------------------~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 281 ISTEGDFP---------------------------RDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EECSSSCC---------------------------CEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred EecCCCCc---------------------------CeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 33332222 233789999999888865 899999 55556553
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.82 E-value=3.7e-19 Score=185.68 Aligned_cols=282 Identities=12% Similarity=0.096 Sum_probs=183.9
Q ss_pred cEEEEEEcCCCCeEEEEeC---------CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 110 AVLSVAFSPDGRQLASGSG---------DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~---------d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
.|.+++|||||++||+++. |+.|++||+.+++.+.. ......+.+++|||||+.|+.+. |+.|++||+.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~-~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG-NELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-SCCCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-eecCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 4889999999999998876 78999999998865210 11135688999999999999885 7899999998
Q ss_pred CCCcccccccCcccce-----------------EEEEeeeeecCCCCceEEEEeCCC-----------------------
Q 010816 181 TGKPSGNPLSGHKKWI-----------------TGISWEPVHLNAPCRRFVSASKDG----------------------- 220 (500)
Q Consensus 181 ~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~~~~~~~s~s~dg----------------------- 220 (500)
+++.......++...+ .++.|+| +++.+++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-----CCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 8875433333333322 3788876 567888877552
Q ss_pred -----------cEEEEECCCCeEE---E-----EecCccccEEEEEeCCCCeEEEE-eC--C--CeEEEEe----CCCCe
Q 010816 221 -----------DARIWDVSLRKCV---I-----CLSGHTLAVTCVKWGGDGVIYTG-SQ--D--CTIKVWE----TTQGK 272 (500)
Q Consensus 221 -----------~v~iwd~~~~~~~---~-----~~~~h~~~v~~~~~~~~~~l~t~-~~--d--g~i~lwd----~~~~~ 272 (500)
.|++||+.+++.. . .+.+|...+.+++|++|+.++.. .. + ..|.+|| ..+++
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~ 293 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD 293 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence 7889999887642 1 13468888999999999865543 22 2 2488899 77776
Q ss_pred eEEEe----ecCCceEE-----EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCC--e
Q 010816 273 LIREL----KGHGHWVN-----SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDF--T 340 (500)
Q Consensus 273 ~~~~~----~~~~~~v~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~--~ 340 (500)
....+ ..+..++. .+.++++. ... ++++..++ .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg-----------------------------------~~l~~~~~~~~g~~~ 338 (719)
T 1z68_A 294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDA-----------------------------------ISYYKIFSDKDGYKH 338 (719)
T ss_dssp CCGGGEEEEECSSSCSSSSSCCCCEECTTS-----------------------------------SCEEEEEECTTSCEE
T ss_pred eEEEEecccccCCceEccccCCccEECCCC-----------------------------------CeEEEEEEccCCceE
Confidence 54444 34555554 45555542 112 22344455 5
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCC--Cce-EEEEeC----CcccEEEE
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTT--GKF-VAVFRG----HVGPVYQI 408 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~--~~~-~~~~~~----h~~~v~~~ 408 (500)
|.+||+.... ...+..+...+..+.++ +++.|+..+.+ +..++|.+.. +.. ...+.. |...+
T Consensus 339 l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~--- 412 (719)
T 1z68_A 339 IHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQY--- 412 (719)
T ss_dssp EEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCB---
T ss_pred EEEEECCCCc--eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCce---
Confidence 6677765433 34455566668887777 88877766665 7888887643 321 111111 22222
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECC--CcEEEEECCCccc
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKD--STLKVWDIRTQKL 463 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d--~~v~iwd~~~~~~ 463 (500)
...+|+|++++++.. +.+ ..+.+||+.+++.
T Consensus 413 ------------------------~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 413 ------------------------YTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp ------------------------EEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred ------------------------EEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 223678998877743 333 4688999877654
No 160
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.81 E-value=1.4e-17 Score=158.19 Aligned_cols=296 Identities=14% Similarity=0.082 Sum_probs=191.5
Q ss_pred CCCeEEEEe------CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 010816 119 DGRQLASGS------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (500)
Q Consensus 119 ~~~~lat~~------~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~ 182 (500)
+++++.... .|+.|.+||..+++.+..+..+..+ .++|+|||++|+++. .++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 555555543 3779999999998887777766555 899999999999876 3678999999887
Q ss_pred CcccccccC-----cccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEeCCCC--
Q 010816 183 KPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGDG-- 252 (500)
Q Consensus 183 ~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~~-- 252 (500)
+........ +......+.++| ++++++++.. +++|.+||+.+++.+.. +... . ...+.+.+++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~sp-----dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~ 164 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTT-----DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPR 164 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECT-----TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSS
T ss_pred cEEEEEEcCccccccCCCcceEEECC-----CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCe
Confidence 654322111 112233455544 5667776653 68999999999988776 4321 1 1223445544
Q ss_pred eEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 253 VIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
.+++.+.||.+.+|+... ++....... . ..+.+.. ...+. .....+..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~--~----~~~~~~~----------~~~~~---------------~~~~~g~~ 213 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRS--K----QMFSVKD----------DPIFI---------------APALDKDK 213 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEEC--C----CCSCTTT----------SCBCS---------------CCEECSSE
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccc--c----ceEcCCC----------CceEE---------------EecccCCE
Confidence 678889999999998765 444321110 0 0000000 00000 00001234
Q ss_pred EEEeeCCCeEEEEcCCCCCCCcee-ee------cccCc----EEEEEECCCCCEEEEEeC-----------CCcEEEEeC
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTR-MT------GHQQL----VNHVYFSPDGQWVASASF-----------DKSIKLWNG 389 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~-~~------~h~~~----v~~l~~sp~g~~lasgs~-----------Dg~i~lwd~ 389 (500)
++..+.++.+.++|.......... .. .+... ...++|+|+++.+.++.. ++.|.+||+
T Consensus 214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~ 293 (361)
T 2oiz_A 214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT 293 (361)
T ss_dssp EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence 555667889999997533211100 00 00111 112689999887766543 348999999
Q ss_pred CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc--cccccc
Q 010816 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ--KLKQDL 467 (500)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~--~~~~~~ 467 (500)
.+++.+..+..+. ...+ +|+|+|++|++++. +.|.+||..++ +.+..+
T Consensus 294 ~t~~~v~~i~~~~--p~~i---------------------------a~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 294 KTKQRVARIPGRD--ALSM---------------------------TIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp TTTEEEEEEECTT--CCEE---------------------------EEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred CCCcEEEEEecCC--eeEE---------------------------EECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence 9999998888765 4444 67999999998887 99999999999 888887
Q ss_pred cCcccCEEEEEEcCCCC
Q 010816 468 PGHADEVFAVDWSPDGE 484 (500)
Q Consensus 468 ~~h~~~V~~l~~s~dg~ 484 (500)
..+......+.++|||+
T Consensus 344 ~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 344 EGAAEASLQVQFHPVGG 360 (361)
T ss_dssp TTSCSSEEEEEECCCSC
T ss_pred ccCCCCcEEEEecCCCC
Confidence 66667788999999986
No 161
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=6.5e-19 Score=179.14 Aligned_cols=232 Identities=13% Similarity=0.058 Sum_probs=164.0
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC---CCeEEEEeC
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ---DCTIKVWET 268 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~---dg~i~lwd~ 268 (500)
..+|.++.|+| +++++++++. ||+++||++..++.......+...+.++.|+||..+++++. +...++|.+
T Consensus 21 ~~~~~~~~~~~-----DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVV-----DGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEE-----TTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCC-----CCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence 45688888877 5678888877 99999999977665544433446899999999955666664 455666554
Q ss_pred CC---CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEc
Q 010816 269 TQ---GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWE 345 (500)
Q Consensus 269 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd 345 (500)
.. +............ ..+++++. ....+++++.++. .+||
T Consensus 96 ~~~~~g~~~~l~~~~~~~--~~~~s~dg----------------------------------~~~~~~s~~~~~~-~l~d 138 (582)
T 3o4h_A 96 NTSRPGEEQRLEAVKPMR--ILSGVDTG----------------------------------EAVVFTGATEDRV-ALYA 138 (582)
T ss_dssp ETTSTTCCEECTTSCSBE--EEEEEECS----------------------------------SCEEEEEECSSCE-EEEE
T ss_pred eccCCCccccccCCCCce--eeeeCCCC----------------------------------CeEEEEecCCCCc-eEEE
Confidence 32 2222211222222 33444331 0123444555554 4998
Q ss_pred CCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC----CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816 346 PAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 346 ~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D----g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 421 (500)
+.... ...+..+.. .+++|||||++||+++.| +.|++||+.+++.. .+.+|.+.+..+
T Consensus 139 ~~~g~--~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~------------- 200 (582)
T 3o4h_A 139 LDGGG--LRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSA------------- 200 (582)
T ss_dssp EETTE--EEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEE-------------
T ss_pred ccCCc--EEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccc-------------
Confidence 75432 223333333 789999999999988887 78999999988765 566776666554
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEECCC--cEEEEECCCccccccccCcccCEEEEE--------EcCCCCEEEEEeC
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSKDS--TLKVWDIRTQKLKQDLPGHADEVFAVD--------WSPDGEKVASGGK 491 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~~~h~~~V~~l~--------~s~dg~~l~s~~~ 491 (500)
+|||||++|+++..++ .|++||+.+++.. .+.+|...+..+. |+|||..+++++.
T Consensus 201 --------------~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 201 --------------SISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp --------------EECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred --------------eECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 6899999999888898 8999999998877 7777877776677 9999988999999
Q ss_pred CCcEEEec
Q 010816 492 DRVLKLWM 499 (500)
Q Consensus 492 D~~v~iW~ 499 (500)
|++++||.
T Consensus 266 ~g~~~l~~ 273 (582)
T 3o4h_A 266 EGRSAVFI 273 (582)
T ss_dssp TTEEEEEE
T ss_pred CCcEEEEE
Confidence 99999996
No 162
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=4.4e-17 Score=155.21 Aligned_cols=269 Identities=8% Similarity=0.048 Sum_probs=166.1
Q ss_pred CEEEEEe----CCCeEEEEeC--CCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCC--C
Q 010816 163 KHLVSGS----KAGELQCWDP--QTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSL--R 230 (500)
Q Consensus 163 ~~l~s~~----~d~~i~~wd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~--~ 230 (500)
.+++.|+ .++.|.+|++ .+++....... +......++|+| +++++++++.+ +.|.+|++.. +
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~sp-----dg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSA-----DGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECT-----TSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECC-----CCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 3455554 3568888865 45543222112 444455566665 55677777775 7999998865 4
Q ss_pred e--EEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEe----e--c--------CCceEEEEEecCcc
Q 010816 231 K--CVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIREL----K--G--------HGHWVNSLALSTEY 293 (500)
Q Consensus 231 ~--~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~----~--~--------~~~~v~~~~~~~~~ 293 (500)
+ .+.....+......+++ ....+++++ .++.|.+|++.....+..+ . + +...+.+++++|+
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd- 165 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD- 165 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT-
T ss_pred cEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC-
Confidence 3 33334444455667777 344555554 6889999998754322111 1 0 0112344555554
Q ss_pred eeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc-EEEEeeCCCeEEEEcCCCCCC------C------ceeeeccc
Q 010816 294 ALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE-RLVSGSDDFTMFLWEPAVSKQ------P------KTRMTGHQ 360 (500)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~s~d~~v~~wd~~~~~~------~------~~~~~~h~ 360 (500)
+. .++++..++.+.+|++..... . ......+.
T Consensus 166 -----------------------------------g~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (361)
T 3scy_A 166 -----------------------------------GKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG 210 (361)
T ss_dssp -----------------------------------SSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred -----------------------------------CCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence 23 345555688999998764432 1 11122344
Q ss_pred CcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceE--EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEE
Q 010816 361 QLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFV--AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW 437 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (500)
..+..++|+|||++|++++ .++.|++|++.++++. ..+...... ......++|
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~------------------------~~~~~~i~~ 266 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN------------------------AQGSGDIHL 266 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC------------------------CCCEEEEEE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC------------------------CCCcccEEE
Confidence 5678999999999887777 6899999999877542 112111100 001123478
Q ss_pred cCCCCEEEEEECC--CcEEEEECC--Ccc--ccccccCcccCEEEEEEcCCCCEEEEEe-CCCcEEEec
Q 010816 438 SADSRLLLSGSKD--STLKVWDIR--TQK--LKQDLPGHADEVFAVDWSPDGEKVASGG-KDRVLKLWM 499 (500)
Q Consensus 438 s~~~~~l~s~s~d--~~v~iwd~~--~~~--~~~~~~~h~~~V~~l~~s~dg~~l~s~~-~D~~v~iW~ 499 (500)
+|||++|+++..+ +.|.+|++. +++ .+..+.. ...+..++|+|||++|++++ .++.|.+|.
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 9999999777665 899999985 344 3333433 44678999999999998887 678999974
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.1e-17 Score=155.57 Aligned_cols=277 Identities=11% Similarity=0.098 Sum_probs=166.3
Q ss_pred EEEEeCC--CcEEEEeC--CCCceeE--Eec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCCcccccccCcc-
Q 010816 123 LASGSGD--TTVRLWDL--NTQTPMF--KCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ-TGKPSGNPLSGHK- 193 (500)
Q Consensus 123 lat~~~d--~~i~iwd~--~~~~~~~--~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~- 193 (500)
|+.|+.. +.|.+|++ .+++... ... +....+..++|+|||++|++++.+ .|.+|++. +++.... ..+.
T Consensus 5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~--~~~~~ 81 (365)
T 1jof_A 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE--ASHPI 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE--EEEEC
T ss_pred EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe--eEeec
Confidence 4455442 45777665 3443211 111 233467889999999999999888 99999986 6653211 1111
Q ss_pred -cceEEEEeeeeecCCCCce--EEEEe-------------CCCcEEEEECC-CCeEEEEec----CccccEEEEEeCCCC
Q 010816 194 -KWITGISWEPVHLNAPCRR--FVSAS-------------KDGDARIWDVS-LRKCVICLS----GHTLAVTCVKWGGDG 252 (500)
Q Consensus 194 -~~v~~~~~~~~~~~~~~~~--~~s~s-------------~dg~v~iwd~~-~~~~~~~~~----~h~~~v~~~~~~~~~ 252 (500)
.....+.|+| ++++ +++++ .++.+++|++. .++....+. .+...+.+++|+++|
T Consensus 82 ~g~~~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG 156 (365)
T 1jof_A 82 GGHPRANDADT-----NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE 156 (365)
T ss_dssp CSSGGGGCTTS-----CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred CCCCccEEECC-----CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence 1122344433 4453 33443 68999999997 455433332 245678899999998
Q ss_pred e-EEEEe-CCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCC
Q 010816 253 V-IYTGS-QDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAP 329 (500)
Q Consensus 253 ~-l~t~~-~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (500)
. ++++. .++.|++||+. +|+..... .+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~--------~~------------------------------------------ 186 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVG--------SV------------------------------------------ 186 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEE--------EE------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEee--------eE------------------------------------------
Confidence 4 55554 46789999986 55421100 00
Q ss_pred cEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC-CCcEEEEeCC--CCceEE---EEeCCcc
Q 010816 330 ERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF-DKSIKLWNGT--TGKFVA---VFRGHVG 403 (500)
Q Consensus 330 ~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~-Dg~i~lwd~~--~~~~~~---~~~~h~~ 403 (500)
. ...|...+..++|+|||++|++++. ++.|.+|++. +|++.. .+...
T Consensus 187 ---------------~----------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~-- 239 (365)
T 1jof_A 187 ---------------D----------APDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLI-- 239 (365)
T ss_dssp ---------------E----------CSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESS--
T ss_pred ---------------e----------cCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcC--
Confidence 0 0012234778999999999887775 7899999764 565421 11110
Q ss_pred cEEEEEeeeeeeecCCCCceeeee---ccccceeeE-EcCCCCEEEEEECCC------cEEEEECC-Cccccc---cccC
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVD---MSCCMSLYS-WSADSRLLLSGSKDS------TLKVWDIR-TQKLKQ---DLPG 469 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~s~~~~~l~s~s~d~------~v~iwd~~-~~~~~~---~~~~ 469 (500)
+........ .......++ |+|||++|++++.+. .|.+|++. ++++.. ....
T Consensus 240 ---------------~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~ 304 (365)
T 1jof_A 240 ---------------PPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp ---------------CTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred ---------------CCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence 000000000 000123347 899999988776432 89999986 555432 1333
Q ss_pred cccCEEEEEEcC---CCCEEEEEeCC-CcEEEec
Q 010816 470 HADEVFAVDWSP---DGEKVASGGKD-RVLKLWM 499 (500)
Q Consensus 470 h~~~V~~l~~s~---dg~~l~s~~~D-~~v~iW~ 499 (500)
+...+..++|+| ||++|++++.+ ++|++|+
T Consensus 305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEE
T ss_pred CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEE
Confidence 444556789999 89999999875 8999995
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=1.8e-17 Score=156.86 Aligned_cols=249 Identities=13% Similarity=0.065 Sum_probs=165.4
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCCe-E-EEEeCCCeEEEEeCCCCeeEEEeecCC----
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGV-I-YTGSQDCTIKVWETTQGKLIRELKGHG---- 281 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l-~t~~~dg~i~lwd~~~~~~~~~~~~~~---- 281 (500)
....+++++.++.|++||+.+++.+..+..+. ..+..++|++++. + +++..++.|.+||+.+++....+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~ 89 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE 89 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccc
Confidence 44578899999999999999998887776443 2466788999873 4 455678999999999998877665322
Q ss_pred --ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC------------CeEEEEcCC
Q 010816 282 --HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD------------FTMFLWEPA 347 (500)
Q Consensus 282 --~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d------------~~v~~wd~~ 347 (500)
..+..++++++ +..+++++.+ +.|.+||+.
T Consensus 90 ~~~~~~~~~~spd------------------------------------g~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 90 VGRSMYSFAISPD------------------------------------GKEVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEECSSCEEECTT------------------------------------SSEEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred ccccccceEECCC------------------------------------CCEEEEEcccccccccccccCCCeEEEEECC
Confidence 22455555554 3356665544 899999976
Q ss_pred CCCCC-ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc-----------------------
Q 010816 348 VSKQP-KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG----------------------- 403 (500)
Q Consensus 348 ~~~~~-~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~----------------------- 403 (500)
..... ......+...+.+++|+|+|+ +++++. .|++||..+++.+..+..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (349)
T 1jmx_B 134 DGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEF 210 (349)
T ss_dssp GGGGBCCSEEEECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEE
T ss_pred CccccceeeeccCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeE
Confidence 42211 111223344688899999999 555544 499999999998877654320
Q ss_pred -cEEEEEeee--------------eeeecCCCCceeee---eccccceeeEEcC-CCCEEEEEECCCcEEEEECCCcccc
Q 010816 404 -PVYQIRFEL--------------IYCFRYPSNFYCVV---DMSCCMSLYSWSA-DSRLLLSGSKDSTLKVWDIRTQKLK 464 (500)
Q Consensus 404 -~v~~~~~~~--------------~~~~~~~~~~~~~~---~~~~~~~~~~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~ 464 (500)
....+.+.. .............. ........++++| +|++++++ ++.|++||+.+++..
T Consensus 211 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~ 288 (349)
T 1jmx_B 211 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLI 288 (349)
T ss_dssp EEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEE
T ss_pred EeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEE
Confidence 011111100 00000000000000 0112234457889 99999988 889999999998877
Q ss_pred ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 465 QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 465 ~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..+..+ ..+.+++|+|||++|++++.++.|++|+
T Consensus 289 ~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 289 KAANLD-HTYYCVAFDKKGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp EEEECS-SCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EEEcCC-CCccceEECCCCCEEEEecCCCeEEEEe
Confidence 666533 3567999999999999999999999997
No 165
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.78 E-value=3.7e-17 Score=168.92 Aligned_cols=258 Identities=14% Similarity=0.018 Sum_probs=175.2
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEE--eCCCcEEEEeCCCCceeEEecCCCCCEE---------EEEEc--CCCCE-EEE
Q 010816 102 ATIAGHTEAVLSVAFSPDGRQLASG--SGDTTVRLWDLNTQTPMFKCTGHKNWVL---------CIAWS--ADGKH-LVS 167 (500)
Q Consensus 102 ~~~~gh~~~V~~~~~sp~~~~lat~--~~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~v~~s--~~~~~-l~s 167 (500)
..+.+|...|..++|++++.++++. +.++...||....+.....+..|...+. ...|+ |||+. |+.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3467899999999999887777777 5688999999655555566777766655 56565 99998 766
Q ss_pred EeC-CCeEEEEeCC--C-CCcccccccC-----cccceEEEEeeeeecCCCCceEEEEeCC----------CcEEEEECC
Q 010816 168 GSK-AGELQCWDPQ--T-GKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKD----------GDARIWDVS 228 (500)
Q Consensus 168 ~~~-d~~i~~wd~~--~-~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~d----------g~v~iwd~~ 228 (500)
++. +..|.+|++. . +... .+.. |...+.+++|+| +++++++++.| ..|++||+.
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~--~l~~~~~~~~~~~~~~~~~sp-----Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPR--PLTPVSAVGGGLRWADPVLLP-----ERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCE--ECSCCCCSTTCEEEEEEEEET-----TTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EECCCCeEEEEcCCCCCCCCCE--eccCCccCCCCccccCcEECC-----CCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 544 5667777765 2 4322 2333 566778888887 55678888776 589999998
Q ss_pred C------CeEEEEec-CccccEEEEEeCCCCe-EEEEeCC--------CeEEEEeCC-CC---eeEEEeecCCceEEEEE
Q 010816 229 L------RKCVICLS-GHTLAVTCVKWGGDGV-IYTGSQD--------CTIKVWETT-QG---KLIRELKGHGHWVNSLA 288 (500)
Q Consensus 229 ~------~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~~~d--------g~i~lwd~~-~~---~~~~~~~~~~~~v~~~~ 288 (500)
. +... .+. .+...+..+.|++||. |+.++.+ ..|++||+. +| +.......+...+..+.
T Consensus 170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~ 248 (662)
T 3azo_A 170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAE 248 (662)
T ss_dssp STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEE
T ss_pred CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceE
Confidence 7 5543 444 5556788889999984 6666644 479999998 56 44344444566788888
Q ss_pred ecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCC--eEEEEcCCCCCCCceeeecccCc----
Q 010816 289 LSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDF--TMFLWEPAVSKQPKTRMTGHQQL---- 362 (500)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~--~v~~wd~~~~~~~~~~~~~h~~~---- 362 (500)
++++. ..+++++.++ .|++||..... .......+...
T Consensus 249 ~spdg------------------------------------~l~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~p~ 291 (662)
T 3azo_A 249 WAPDG------------------------------------SLIVATDRTGWWNLHRVDPATGA-ATQLCRREEEFAGPL 291 (662)
T ss_dssp ECTTS------------------------------------CEEEEECTTSSCEEEEECTTTCC-EEESSCCSSBSSCCC
T ss_pred ECCCC------------------------------------eEEEEECCCCCeEEEEEECCCCc-eeecccccccccCcc
Confidence 87753 3466667777 56666653322 11111222221
Q ss_pred ----EEEEEECCCCCEEEEEeCCCcEEEE--eCCCCceEEEEeCCcccEE
Q 010816 363 ----VNHVYFSPDGQWVASASFDKSIKLW--NGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 363 ----v~~l~~sp~g~~lasgs~Dg~i~lw--d~~~~~~~~~~~~h~~~v~ 406 (500)
+.+++|+|+++++++++. +.++|| |..+++ +..+..|.+.+.
T Consensus 292 w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~ 339 (662)
T 3azo_A 292 WTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWA 339 (662)
T ss_dssp CSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEE
T ss_pred ccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEE
Confidence 467899999999999998 999999 655555 555666655443
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.77 E-value=4e-17 Score=157.02 Aligned_cols=298 Identities=16% Similarity=0.135 Sum_probs=179.9
Q ss_pred ccccCCcccEEE-----EEEcCCCCeEEEEeC-CCc--EEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe
Q 010816 102 ATIAGHTEAVLS-----VAFSPDGRQLASGSG-DTT--VRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE 173 (500)
Q Consensus 102 ~~~~gh~~~V~~-----~~~sp~~~~lat~~~-d~~--i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~ 173 (500)
..+..|...... .+|+|||++||.++. ++. |.+||+.+++......++...+..+.|+|||+.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 345556655555 789999999999887 664 888899888776555566666657789999999999999999
Q ss_pred EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEE----------------------EeCCCcEEEEECCCCe
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVS----------------------ASKDGDARIWDVSLRK 231 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s----------------------~s~dg~v~iwd~~~~~ 231 (500)
|.+||+.+++... ....+...+....|. .+.++..++. .+.+..|.+||+.+++
T Consensus 104 l~~~d~~~g~~~~-~~~~~~~~~~~~~~~---~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~ 179 (388)
T 3pe7_A 104 LMRVDLATLEENV-VYQVPAEWVGYGTWV---ANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE 179 (388)
T ss_dssp EEEEETTTCCEEE-EEECCTTEEEEEEEE---ECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC
T ss_pred EEEEECCCCccee-eeechhhccccccee---ECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc
Confidence 9999999886432 222333334333332 1234444442 2345789999999886
Q ss_pred EEEEecCccccEEEEEeCC-CCe-EEEEeC------CCeEEEEeCCCCeeEEEeecCC--ceEEEEEecCcceeeecccc
Q 010816 232 CVICLSGHTLAVTCVKWGG-DGV-IYTGSQ------DCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~-~~~-l~t~~~------dg~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~ 301 (500)
... +..+...+..+.|+| ++. |+.... ...|.++|...+.. +.+..+. ..+..+.++|+.
T Consensus 180 ~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg-------- 249 (388)
T 3pe7_A 180 STV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDG-------- 249 (388)
T ss_dssp EEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTS--------
T ss_pred eEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCC--------
Confidence 543 334556788999999 874 544444 33788888765543 3333333 356677777763
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-eeC----CCeEEEEcCCCCCCCc-eeeecccCc---EEEEEECCCC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-GSD----DFTMFLWEPAVSKQPK-TRMTGHQQL---VNHVYFSPDG 372 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~s~----d~~v~~wd~~~~~~~~-~~~~~h~~~---v~~l~~sp~g 372 (500)
..++. +.. +..|++||+....... ..+.++... ...++|+|||
T Consensus 250 ----------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg 301 (388)
T 3pe7_A 250 ----------------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG 301 (388)
T ss_dssp ----------------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE
T ss_pred ----------------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC
Confidence 22322 221 1249999986543211 111111000 1113689999
Q ss_pred CEEEEE---------eCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCE
Q 010816 373 QWVASA---------SFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRL 443 (500)
Q Consensus 373 ~~lasg---------s~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 443 (500)
+.|+.. ..+..|++||+.+++... +..|......+ ..+........+|+|||+.
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~----------------~~~~~~~~~~~~~spDg~~ 364 (388)
T 3pe7_A 302 SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-VARHDTSWKVF----------------EGDRQVTHPHPSFTPDDKQ 364 (388)
T ss_dssp CCC------------CCCCEEEEEETTTTEEEE-EEECCCCCCCB----------------TTBSSTTCCCCEECTTSSE
T ss_pred CcceeEeeeccccccCCCCEEEEEeccCCceEE-eccccCccccc----------------ccccccCCCCccCCCCCCE
Confidence 988754 446689999998876533 33222200000 0000001223478999998
Q ss_pred EEEEE-CCCcEEEEEC
Q 010816 444 LLSGS-KDSTLKVWDI 458 (500)
Q Consensus 444 l~s~s-~d~~v~iwd~ 458 (500)
|+.++ .++...||.+
T Consensus 365 l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 365 ILFTSDVHGKPALYLA 380 (388)
T ss_dssp EEEEECTTSSCEEEEE
T ss_pred EEEEecCCCceeEEEE
Confidence 88766 4677777754
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.77 E-value=4.3e-17 Score=157.18 Aligned_cols=289 Identities=16% Similarity=0.135 Sum_probs=181.9
Q ss_pred EeCCCCceeEEecCCCCC-----EEEEEEcCCCCEEEEEeCC---CeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 135 WDLNTQTPMFKCTGHKNW-----VLCIAWSADGKHLVSGSKA---GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 135 wd~~~~~~~~~~~~h~~~-----v~~v~~s~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
.|..++..+..+..+... +.+++|+|||++|+..... ..|.+||+.+++... ...++......+.|+|
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~sp--- 90 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFIST--- 90 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECT---
T ss_pred ecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECC---
Confidence 366677666666554333 6788999999998876543 478888988776432 1222222222355655
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEE-------------------EEeCCCCe-EEEE-----eCCC
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTC-------------------VKWGGDGV-IYTG-----SQDC 261 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~-l~t~-----~~dg 261 (500)
+++.++.++.++.+++||+..++.......+...... +.|++++. ++.+ ..+.
T Consensus 91 --dg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 91 --DERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp --TSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred --CCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 5678889999999999999888765555544333222 23455542 2211 4567
Q ss_pred eEEEEeCCCCeeEEEeecCCceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC--
Q 010816 262 TIKVWETTQGKLIRELKGHGHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD-- 338 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d-- 338 (500)
.|.+||+.+++..... .+...+..+.++| +. ..++..+.+
T Consensus 169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg------------------------------------~~l~~~~~~~~ 211 (396)
T 3c5m_A 169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDD------------------------------------STVGFCHEGPH 211 (396)
T ss_dssp EEEEEETTTCCEEEEE-EESSCEEEEEEETTEE------------------------------------EEEEEEECSCS
T ss_pred eEEEEECCCCcEEeec-cCCcccccceECCCCC------------------------------------CEEEEEecCCC
Confidence 8999999887755443 3455667777776 32 223332222
Q ss_pred ----CeEEEEcCCCCCCCceeeecc--cCcEEEEEECCCCCEEEEEeCC-----CcEEEEeCCCCceEEEEeCCcccEEE
Q 010816 339 ----FTMFLWEPAVSKQPKTRMTGH--QQLVNHVYFSPDGQWVASASFD-----KSIKLWNGTTGKFVAVFRGHVGPVYQ 407 (500)
Q Consensus 339 ----~~v~~wd~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~lasgs~D-----g~i~lwd~~~~~~~~~~~~h~~~v~~ 407 (500)
..|.+||..... ...+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++........ + .
T Consensus 212 ~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~-- 285 (396)
T 3c5m_A 212 DLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-C-- 285 (396)
T ss_dssp SSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-E--
T ss_pred CCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-C--
Confidence 457788864322 1222222 2357889999999988777654 45999999888654322111 0 0
Q ss_pred EEeeeeeeecCCCCceeeeeccccceeeEEcC-CCCEEEEEE----------------CCCcEEEEECCCccccccccCc
Q 010816 408 IRFELIYCFRYPSNFYCVVDMSCCMSLYSWSA-DSRLLLSGS----------------KDSTLKVWDIRTQKLKQDLPGH 470 (500)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~s~s----------------~d~~v~iwd~~~~~~~~~~~~h 470 (500)
. ..|+| +|+++++++ .+..|++||+.+++.. .+..+
T Consensus 286 -------------------------~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~ 338 (396)
T 3c5m_A 286 -------------------------S-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKH 338 (396)
T ss_dssp -------------------------E-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEEC
T ss_pred -------------------------C-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCC
Confidence 0 26789 999888765 3478999999887653 34444
Q ss_pred cc-----------CEEEEEEcCCCCEEEEEeC-CCcEEEec
Q 010816 471 AD-----------EVFAVDWSPDGEKVASGGK-DRVLKLWM 499 (500)
Q Consensus 471 ~~-----------~V~~l~~s~dg~~l~s~~~-D~~v~iW~ 499 (500)
.. .+..++|+|||++|+.++. ++...||.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 339 STSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYI 379 (396)
T ss_dssp CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEE
Confidence 43 2566789999999987765 56666663
No 168
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2.1e-16 Score=150.62 Aligned_cols=154 Identities=11% Similarity=0.075 Sum_probs=106.1
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCC-CCceeEEec--CCCCCEEEEEEcCCCCE--EEEEe-------------
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLN-TQTPMFKCT--GHKNWVLCIAWSADGKH--LVSGS------------- 169 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~-~~~~~~~~~--~h~~~v~~v~~s~~~~~--l~s~~------------- 169 (500)
...+..++|+|+|++|++++.+ .|.+|++. +++...... .+ +.+.+++|+|||++ ++++.
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 116 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence 3457789999999999999888 99999997 665433221 11 23556899999994 55654
Q ss_pred CCCeEEEEeCC-CCCccccccc----CcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECC-CCeEE--EEec--C
Q 010816 170 KAGELQCWDPQ-TGKPSGNPLS----GHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVS-LRKCV--ICLS--G 238 (500)
Q Consensus 170 ~d~~i~~wd~~-~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~-~~~~~--~~~~--~ 238 (500)
.++.+.+|++. +++... .+. .+...+.++.|+| ++++++++. .++.|++||+. +++.. ..+. .
T Consensus 117 ~~g~v~v~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~sp-----dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 190 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEK-NVQNYEYQENTGIHGMVFDP-----TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD 190 (365)
T ss_dssp SCCEEEEEEECTTCCEEE-EEEEEECCTTCCEEEEEECT-----TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS
T ss_pred CCceEEEEccCCCCcCcc-eEeeEEeCCCCcceEEEECC-----CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC
Confidence 68999999987 354321 111 2345677888876 445566554 46799999998 66543 2232 2
Q ss_pred ccccEEEEEeCCCC-eEEEEe-CCCeEEEEeCC
Q 010816 239 HTLAVTCVKWGGDG-VIYTGS-QDCTIKVWETT 269 (500)
Q Consensus 239 h~~~v~~~~~~~~~-~l~t~~-~dg~i~lwd~~ 269 (500)
|...+..++|++++ .+++++ .++.|.+|++.
T Consensus 191 ~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 35568899999998 466655 47899999764
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=3.5e-15 Score=139.94 Aligned_cols=244 Identities=16% Similarity=0.157 Sum_probs=168.2
Q ss_pred cccEEEEEEcCCCCeEEEEeCC------------------------CcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGD------------------------TTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADG 162 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d------------------------~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~ 162 (500)
-+.+.+++++|+|+++++...+ ++|.+||..+++.+.... ++-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4579999999999999888877 479999998887765543 445678999999999
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccc---------cCcccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeE
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPL---------SGHKKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKC 232 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~ 232 (500)
+++++...++.|++||..........+ .++-....++++.|. ++..+++.+ .++.|++|| ..++.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~----~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS----TGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT----TCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC----CCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 988888889999999985432111111 223335567776651 345667776 689999999 55666
Q ss_pred EEEecC----------ccccEEEEEeCCC-CeEE-EEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 233 VICLSG----------HTLAVTCVKWGGD-GVIY-TGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 233 ~~~~~~----------h~~~v~~~~~~~~-~~l~-t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
+..+.. +......++++++ +.|+ +...++.|++||..+|+.+..+...
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-------------------- 237 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-------------------- 237 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT--------------------
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc--------------------
Confidence 655532 2234678888887 6554 4556788999998777765544211
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECC------CCCE
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP------DGQW 374 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp------~g~~ 374 (500)
.+...+..++|+| +|+.
T Consensus 238 ---------------------------------------------------------~~~~~~~~~~~~pg~~~~~~g~~ 260 (329)
T 3fvz_A 238 ---------------------------------------------------------SFGRNVFAISYIPGFLFAVNGKP 260 (329)
T ss_dssp ---------------------------------------------------------TTTTCEEEEEEETTEEEEEECCC
T ss_pred ---------------------------------------------------------ccCCCcceeeecCCEEEEeCCCE
Confidence 1112234455555 3433
Q ss_pred EEEEeCCCcEEEEeCCCCceEEEEe---CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816 375 VASASFDKSIKLWNGTTGKFVAVFR---GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (500)
Q Consensus 375 lasgs~Dg~i~lwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~ 451 (500)
.++...+..|++||..+++.+..+. ++......+ +++|+|.++++...++
T Consensus 261 ~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~i---------------------------a~~~dG~lyvad~~~~ 313 (329)
T 3fvz_A 261 YFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDI---------------------------VASEDGTVYIGDAHTN 313 (329)
T ss_dssp CTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEE---------------------------EECTTSEEEEEESSSC
T ss_pred EeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEE---------------------------EECCCCCEEEEECCCC
Confidence 3344456689999999999888763 333333333 6799998888888899
Q ss_pred cEEEEECCC
Q 010816 452 TLKVWDIRT 460 (500)
Q Consensus 452 ~v~iwd~~~ 460 (500)
.|++|++..
T Consensus 314 ~I~~~~~~~ 322 (329)
T 3fvz_A 314 TVWKFTLTE 322 (329)
T ss_dssp CEEEEEEEE
T ss_pred EEEEEeCCc
Confidence 999999754
No 170
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=1.6e-15 Score=142.35 Aligned_cols=254 Identities=13% Similarity=0.142 Sum_probs=175.9
Q ss_pred CCCEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816 150 KNWVLCIAWSADGKHLVSGSKA------------------------GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d------------------------~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (500)
-+.+.+|+++|+|+++++.+.+ +.|.+||..+++.....-.++-....++++.|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-- 100 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-- 100 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC--
Confidence 3568999999999999888777 47999999888754322223334566777654
Q ss_pred cCCCCceEEEEeCCCcEEEEECCCCe-EEEEe---------cCccccEEEEEeCC-CCeEEEEe--CCCeEEEEeCCCCe
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSLRK-CVICL---------SGHTLAVTCVKWGG-DGVIYTGS--QDCTIKVWETTQGK 272 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~~~~~~-~~~l~t~~--~dg~i~lwd~~~~~ 272 (500)
++..+++...++.|++||..... .+..+ .++......+++++ ++.++.+. .++.|++|| .+|+
T Consensus 101 ---~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~ 176 (329)
T 3fvz_A 101 ---DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGK 176 (329)
T ss_dssp ---TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSC
T ss_pred ---CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCC
Confidence 45678888889999999986542 44444 23444678899998 77666555 489999999 4555
Q ss_pred eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC
Q 010816 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP 352 (500)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~ 352 (500)
.+..+... +..+ ..
T Consensus 177 ~~~~~~~~------------------------------------------------------g~~~----------~~-- 190 (329)
T 3fvz_A 177 FVTQWGEE------------------------------------------------------SSGS----------SP-- 190 (329)
T ss_dssp EEEEECEE------------------------------------------------------CCSS----------SC--
T ss_pred EEEEeccC------------------------------------------------------CCCC----------CC--
Confidence 44332110 0000 00
Q ss_pred ceeeecccCcEEEEEECCC-CCEEEEEeCCCcEEEEeCCCCceEEEEeC--CcccEEEEEeeeeeeecCCCCceeeeecc
Q 010816 353 KTRMTGHQQLVNHVYFSPD-GQWVASASFDKSIKLWNGTTGKFVAVFRG--HVGPVYQIRFELIYCFRYPSNFYCVVDMS 429 (500)
Q Consensus 353 ~~~~~~h~~~v~~l~~sp~-g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 429 (500)
..++......++++|+ +.++++...++.|++||..+|+.+..+.. +...++.+.+..
T Consensus 191 ---~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p----------------- 250 (329)
T 3fvz_A 191 ---RPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP----------------- 250 (329)
T ss_dssp ---CTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-----------------
T ss_pred ---CCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-----------------
Confidence 0012234688999998 78888888899999999998998887743 444555553311
Q ss_pred ccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc---cCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 430 CCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL---PGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 430 ~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~---~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...+..+|...++...+..|++||..+++.+..+ .++.....+++++|+|..+++...+++|++|+
T Consensus 251 ----g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 251 ----GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp ----TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred ----CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence 0011224444444555679999999999888776 36777899999999998888888999999986
No 171
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=1.2e-16 Score=166.82 Aligned_cols=297 Identities=13% Similarity=0.077 Sum_probs=174.1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccce-----EEEEeeeeecCCCCceEEEEeCC-------
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI-----TGISWEPVHLNAPCRRFVSASKD------- 219 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~~~s~s~d------- 219 (500)
...++.|+|||++++++ |++|++||+.+++... .+.+|.... .++.|+| ++++++.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Sp-----dg~~l~~~~~~~~~~r~~ 89 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP-----DGQFILLEYNYVKQWRHS 89 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEE-EECTTTTTTCCSCCCEEEECT-----TSSEEEEEEEEEECSSSC
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEE-EEechhhhhhcccccceEECC-----CCCEEEEEECCeeeEEEc
Confidence 35689999999988886 9999999999987532 345554322 2245554 66788887776
Q ss_pred --CcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee-cCCceE------------
Q 010816 220 --GDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-GHGHWV------------ 284 (500)
Q Consensus 220 --g~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v------------ 284 (500)
+.+.+||+.++++.. +..|...+..++|+|||..++-..|+.|++||+.+++..+... ++...+
T Consensus 90 ~~~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee 168 (740)
T 4a5s_A 90 YTASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE 168 (740)
T ss_dssp EEEEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred cceEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence 566799999988653 5677788999999999863333467899999998887554221 221111
Q ss_pred -----EEEEecCcce-eeeccccCCCCC-CCCHHHHHHHHHHhhhhhcCCCCcE-EE----EeeCC--CeEEEEcCCC--
Q 010816 285 -----NSLALSTEYA-LRTGAFDHTGKQ-YSSPEEMKKAALERYNKIKGNAPER-LV----SGSDD--FTMFLWEPAV-- 348 (500)
Q Consensus 285 -----~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~----s~s~d--~~v~~wd~~~-- 348 (500)
..+.++|++. +.....+..... +..+. ........+.. -+ .|..+ .++++||+..
T Consensus 169 ~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~---------~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~ 239 (740)
T 4a5s_A 169 VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF---------YSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLS 239 (740)
T ss_dssp TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE---------CCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCC
T ss_pred hcCCCcceEECCCCCEEEEEEEcccCCceEEEEe---------ecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCC
Confidence 2477888764 332223322110 00000 00000000000 00 11112 2688899876
Q ss_pred -CCC-Cceeee------cccCcEEEEEECCCCCEEEEEeC----CCcEEEEeCCCCc----eEE--EE--eCCcccEEEE
Q 010816 349 -SKQ-PKTRMT------GHQQLVNHVYFSPDGQWVASASF----DKSIKLWNGTTGK----FVA--VF--RGHVGPVYQI 408 (500)
Q Consensus 349 -~~~-~~~~~~------~h~~~v~~l~~sp~g~~lasgs~----Dg~i~lwd~~~~~----~~~--~~--~~h~~~v~~~ 408 (500)
... ....+. +|...+..++|+|||++++.... +..|++||+.+|+ +.. .+ .+|.+.+..
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~- 318 (740)
T 4a5s_A 240 SVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGR- 318 (740)
T ss_dssp SSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSS-
T ss_pred CCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEcc-
Confidence 421 122232 37778999999999997766543 3479999998887 211 11 223322110
Q ss_pred EeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE-EEEC-CC--cEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816 409 RFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSK-DS--TLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~s~-d~--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
......+|+|||+.|+ ..+. +| .|++||+.+++...... ..-.|..+.+ +|++
T Consensus 319 ---------------------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~-g~~~v~~~~~-~d~~ 375 (740)
T 4a5s_A 319 ---------------------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITK-GTWEVIGIEA-LTSD 375 (740)
T ss_dssp ---------------------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCC-SSSCEEEEEE-ECSS
T ss_pred ---------------------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEeccc-CCEEEEEEEE-EeCC
Confidence 0011237899999887 6664 33 68888988766554333 3445655432 3466
Q ss_pred EEEEEe
Q 010816 485 KVASGG 490 (500)
Q Consensus 485 ~l~s~~ 490 (500)
.|+..+
T Consensus 376 ~i~f~~ 381 (740)
T 4a5s_A 376 YLYYIS 381 (740)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 655443
No 172
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.72 E-value=3.3e-15 Score=141.28 Aligned_cols=270 Identities=12% Similarity=0.123 Sum_probs=169.4
Q ss_pred ccEEEEEEcCCCCeEEEEe---------CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC---C--eE
Q 010816 109 EAVLSVAFSPDGRQLASGS---------GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA---G--EL 174 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~---------~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d---~--~i 174 (500)
..+..+++ ||+++|... .++.|.+||+.+++... + ..+..+.|+|||++|+.++.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 34566777 888887642 26679999998876532 3 468899999999999987754 3 37
Q ss_pred EEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeC---------------------------CCcEEEEEC
Q 010816 175 QCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASK---------------------------DGDARIWDV 227 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~---------------------------dg~v~iwd~ 227 (500)
.+||+.+++... +..+.. +..+.|+| +++.++.++. ...|++||+
T Consensus 88 ~~~~~~~g~~~~--l~~~~~-~~~~~wsp-----dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 88 WVADLETLSSKK--ILEAKN-IRSLEWNE-----DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp EEEETTTTEEEE--EEEESE-EEEEEECT-----TSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred EEEECCCCceEE--EEcCCC-ccceeECC-----CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 777887765432 222233 78888876 4556776653 257899999
Q ss_pred CCCeEEEEecCccccEEEEEeCCCCeEEEEeCCC-------eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDC-------TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg-------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
.+++.+..+.. . .+..+.|++++.++++..+. ...+|.+.+++. ..+..+ ..+..+ +|+
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~--spd-------- 225 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV--DSD-------- 225 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE--EEC--------
T ss_pred CCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE--CCC--------
Confidence 88876344433 3 67788999999555555432 334443334443 333222 223222 332
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC--------CCeEEEEcCCCCCCCceeeecccCcEEE-EEECCC
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD--------DFTMFLWEPAVSKQPKTRMTGHQQLVNH-VYFSPD 371 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~--------d~~v~~wd~~~~~~~~~~~~~h~~~v~~-l~~sp~ 371 (500)
+..++..+. ...|.+|| .........++...+.. +.|+ |
T Consensus 226 ----------------------------g~~l~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~~~~~~s-d 273 (347)
T 2gop_A 226 ----------------------------GERILLYGKPEKKYMSEHNKLYIYD---GKEVMGILDEVDRGVGQAKIKD-G 273 (347)
T ss_dssp ----------------------------SSCEEEEECCSSSCCCSSCEEEEEC---SSCEEESSTTCCSEEEEEEEET-T
T ss_pred ----------------------------CCEEEEEEccccCCccccceEEEEC---CCceEeccccCCcccCCccEEc-C
Confidence 223444432 24688887 22223333456677886 9999 8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCC
Q 010816 372 GQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS 451 (500)
Q Consensus 372 g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~ 451 (500)
| ++++++.|+.++|| +.+++....+ .+.+.+..+ +|+| .++++++.++
T Consensus 274 g-~~~~~~~~~~~~l~-~~~g~~~~~~-~~~~~v~~~---------------------------~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 274 K-VYFTLFEEGSVNLY-IWDGEIKPIA-KGRHWIMGF---------------------------DVDE--IVVYLKETAT 321 (347)
T ss_dssp E-EEEEEEETTEEEEE-EESSSEEEEE-CSSSEEEEE---------------------------EESS--SEEEEEECSS
T ss_pred c-EEEEEecCCcEEEE-EcCCceEEEe-cCCCeEEee---------------------------eeeC--cEEEEEcCCC
Confidence 8 99999999999999 8766654333 334444443 5678 6777777776
Q ss_pred cE-EEEECCCccccccccCcccC
Q 010816 452 TL-KVWDIRTQKLKQDLPGHADE 473 (500)
Q Consensus 452 ~v-~iwd~~~~~~~~~~~~h~~~ 473 (500)
.. +||.+. ++ ...+..|+..
T Consensus 322 ~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 322 RLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SCCEEEEES-SS-EEECCCTTST
T ss_pred ChHHheEeC-Cc-EEEeccccHh
Confidence 54 777765 44 3446666543
No 173
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.7e-14 Score=132.48 Aligned_cols=240 Identities=15% Similarity=0.195 Sum_probs=165.1
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec------CCCCCEEEEEE-cCCCCEEEEEeC-CCeEEE
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT------GHKNWVLCIAW-SADGKHLVSGSK-AGELQC 176 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~------~h~~~v~~v~~-s~~~~~l~s~~~-d~~i~~ 176 (500)
.+|-....+++++|+++++++...++.|.+||.. +..+..+. +|...+..+++ .+++.++++... ++.|.+
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4667789999999999988888889999999987 44444442 34467899999 567766666543 899999
Q ss_pred EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--CccccEEEEEeCCCCeE
Q 010816 177 WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVI 254 (500)
Q Consensus 177 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l 254 (500)
|| .+++........+.....++.+.| ++..+++...++.|.+||.. ++.+..+. ++...+..+++++++.+
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVDN-----KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEI 177 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEECT-----TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEeC-----CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCE
Confidence 99 455543222222334566777654 44567777778999999964 44444443 44556889999998876
Q ss_pred EEE-eCCCeEEEEeCCCCeeEEEeecCC--ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 255 YTG-SQDCTIKVWETTQGKLIRELKGHG--HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 255 ~t~-~~dg~i~lwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
+.+ ..++.|++||. +++.+..+..+. .....++++++ +..
T Consensus 178 ~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~------------------------------------G~l 220 (286)
T 1q7f_A 178 FISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSN------------------------------------GEI 220 (286)
T ss_dssp EEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTT------------------------------------CCE
T ss_pred EEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCC------------------------------------CCE
Confidence 655 56899999997 455565554332 34556665543 345
Q ss_pred EEEeeCCC-eEEEEcCCCCCCCceeeeccc--CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCC
Q 010816 332 LVSGSDDF-TMFLWEPAVSKQPKTRMTGHQ--QLVNHVYFSPDGQWVASASFDKSIKLWNGTTG 392 (500)
Q Consensus 332 ~~s~s~d~-~v~~wd~~~~~~~~~~~~~h~--~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~ 392 (500)
+++...++ .|.+||... .....+..+. ..+.+++++|+|+++++ +.|+.|++|++...
T Consensus 221 ~v~~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 221 LIADNHNNFNLTIFTQDG--QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEECSSSCEEEEECTTS--CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EEEeCCCCEEEEEECCCC--CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66666675 999999532 2223333332 34789999999987777 67999999997653
No 174
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=9.6e-16 Score=158.30 Aligned_cols=291 Identities=12% Similarity=0.039 Sum_probs=183.8
Q ss_pred ecCCCCCEEEEEEcCCCCEEEEE--eCCCeEEEEeCCCCCcccccccCcccceE---------EEEeeeeecCCCCce-E
Q 010816 146 CTGHKNWVLCIAWSADGKHLVSG--SKAGELQCWDPQTGKPSGNPLSGHKKWIT---------GISWEPVHLNAPCRR-F 213 (500)
Q Consensus 146 ~~~h~~~v~~v~~s~~~~~l~s~--~~d~~i~~wd~~~~~~~~~~~~~~~~~v~---------~~~~~~~~~~~~~~~-~ 213 (500)
+.+|...+..++|+++.-++++. +.++...||....+.... .+..+...+. ...|.. ++++++ +
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~---SPDg~~~l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE-SALPAPWNVRNRVFEYSGFPWAGVP---RPAGGPLL 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE-ESSCTTCCBCCCGGGTCCCCEEEEC---CSSSSCEE
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc-eeCCCCccccccccccCCccceeee---ecCCCeEE
Confidence 45788899999999886666666 568899999864333222 2344444443 444431 124556 5
Q ss_pred EEEeC-CCcEEEEECC--CCeEEEEecC-----ccccEEEEEeCCCC-eEEEEeCC----------CeEEEEeCCC----
Q 010816 214 VSASK-DGDARIWDVS--LRKCVICLSG-----HTLAVTCVKWGGDG-VIYTGSQD----------CTIKVWETTQ---- 270 (500)
Q Consensus 214 ~s~s~-dg~v~iwd~~--~~~~~~~~~~-----h~~~v~~~~~~~~~-~l~t~~~d----------g~i~lwd~~~---- 270 (500)
+.++. +..|+++++. .......+.. |...+.+++|++|| .|++++.| ..|++||+.+
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 174 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA 174 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence 54443 5667777765 2033344544 67788999999998 46667666 5899999987
Q ss_pred --CeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC--------C
Q 010816 271 --GKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD--------F 339 (500)
Q Consensus 271 --~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d--------~ 339 (500)
++. ..+. .+...+..++++|+. ..++..+.+ .
T Consensus 175 ~~~~~-~~l~~~~~~~~~~~~~SpDG------------------------------------~~la~~~~~~~~~~~~~~ 217 (662)
T 3azo_A 175 DRSAV-RELSDDAHRFVTGPRLSPDG------------------------------------RQAVWLAWDHPRMPWEGT 217 (662)
T ss_dssp CGGGS-EESSCSCSSEECCCEECTTS------------------------------------SEEEEEEECTTCCTTTCE
T ss_pred cCCce-eEEEecCCCcccCceECCCC------------------------------------CEEEEEECCCCCCCCCCc
Confidence 544 4444 445566677777753 345555433 3
Q ss_pred eEEEEcCCCCC---CCceeeecccCcEEEEEECCCCCEEEEEeCCC--cEEEEeCCCCceEEEEeCCcccEEEEEeeeee
Q 010816 340 TMFLWEPAVSK---QPKTRMTGHQQLVNHVYFSPDGQWVASASFDK--SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIY 414 (500)
Q Consensus 340 ~v~~wd~~~~~---~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg--~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 414 (500)
.|++||+.... .......+|...+..++|+|||+++++++.|+ .|++||+.+++......++... ...
T Consensus 218 ~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~-~~p------ 290 (662)
T 3azo_A 218 ELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF-AGP------ 290 (662)
T ss_dssp EEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS-SCC------
T ss_pred EEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc-cCc------
Confidence 79999976322 22333345578899999999999888888888 6777777677654433322110 000
Q ss_pred eecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE--ECCCccccccccCcccCEEEE-EEcCCCCEEEEEeC
Q 010816 415 CFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW--DIRTQKLKQDLPGHADEVFAV-DWSPDGEKVASGGK 491 (500)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw--d~~~~~~~~~~~~h~~~V~~l-~~s~dg~~l~s~~~ 491 (500)
........++|+|+++++++++. +.++|| |+.+++ ...+..|.+.+..+ +++++.-.+++++.
T Consensus 291 ------------~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~ 356 (662)
T 3azo_A 291 ------------LWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASP 356 (662)
T ss_dssp ------------CCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEET
T ss_pred ------------cccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCC
Confidence 00000123477899999999998 999999 655555 46677787777777 55544444556666
Q ss_pred CCcEEEe
Q 010816 492 DRVLKLW 498 (500)
Q Consensus 492 D~~v~iW 498 (500)
+....+|
T Consensus 357 ~~~~~i~ 363 (662)
T 3azo_A 357 RTAYEVV 363 (662)
T ss_dssp TEEEEEE
T ss_pred CCCCEEE
Confidence 6655555
No 175
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=4.2e-16 Score=150.20 Aligned_cols=294 Identities=11% Similarity=0.019 Sum_probs=170.2
Q ss_pred cEEEEEEcCCCCeEEEEeCC---CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 110 AVLSVAFSPDGRQLASGSGD---TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d---~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
.+.+++|+|||++||..... ..|.+||+.+++......++......+.|+|||++|+.++.++.|.+||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36678999999998877543 468888998876543322332223347899999999999999999999998876432
Q ss_pred ccccCcccceEE---EEeee-----------eecCCCCceEEEE-----eCCCcEEEEECCCCeEEEEecCccccEEEEE
Q 010816 187 NPLSGHKKWITG---ISWEP-----------VHLNAPCRRFVSA-----SKDGDARIWDVSLRKCVICLSGHTLAVTCVK 247 (500)
Q Consensus 187 ~~~~~~~~~v~~---~~~~~-----------~~~~~~~~~~~s~-----s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~ 247 (500)
....+..+... +.+.. ....++++.++.. ..+..|++||+.+++..... .+...+..+.
T Consensus 117 -~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~ 194 (396)
T 3c5m_A 117 -IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPI 194 (396)
T ss_dssp -EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEE
T ss_pred -EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccce
Confidence 12222222211 11100 0111222233222 35668999999887765443 4566788999
Q ss_pred eCC-CCe-EEEEeCC------CeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 248 WGG-DGV-IYTGSQD------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 248 ~~~-~~~-l~t~~~d------g~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
|++ ++. |+..+.+ ..|.+||+..++........ ...+..+.++|+.
T Consensus 195 ~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg------------------------- 249 (396)
T 3c5m_A 195 YRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG------------------------- 249 (396)
T ss_dssp EETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS-------------------------
T ss_pred ECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC-------------------------
Confidence 999 563 5554433 46888898665433322211 3356667777653
Q ss_pred HhhhhhcCCCCcEEEEeeCC-----CeEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEe-------------
Q 010816 319 ERYNKIKGNAPERLVSGSDD-----FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASAS------------- 379 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d-----~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs------------- 379 (500)
..++..+.+ +.|++||+..... ..+..... .. +.|+| ||+++++++
T Consensus 250 -----------~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 250 -----------SAMAYVSYFKGQTDRVIYKANPETLEN--EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp -----------SCEEEEEEETTTCCEEEEEECTTTCCE--EEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred -----------CEEEEEecCCCCccceEEEEECCCCCe--EEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 234433322 4599999764432 22222222 33 88999 999888765
Q ss_pred ---CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEE
Q 010816 380 ---FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKV 455 (500)
Q Consensus 380 ---~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~i 455 (500)
.++.|++||+.+++... +..+...+.. + ..+........+|+|+|+.|+.++. ++...|
T Consensus 315 ~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~--~--------------~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l 377 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQK-LCKHSTSWDV--L--------------DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAI 377 (396)
T ss_dssp CCCCCCEEEEEETTTTBCCE-EEECCCCCCC--B--------------TTBSSTTCCCCEECTTSSEEEEEECTTSSCEE
T ss_pred ccCCCCcEEEEecccCceEE-ccCCCCcccc--c--------------cccccCCCCCceEccCCCeEEEEecCCCCceE
Confidence 34789999998876432 2222210000 0 0000001122368999998887775 455555
Q ss_pred E--ECCCcc
Q 010816 456 W--DIRTQK 462 (500)
Q Consensus 456 w--d~~~~~ 462 (500)
| ++.+++
T Consensus 378 ~~~~~~~~~ 386 (396)
T 3c5m_A 378 YIADVPESY 386 (396)
T ss_dssp EEEECCTTC
T ss_pred EEEEEcccc
Confidence 5 444443
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=2e-14 Score=131.97 Aligned_cols=233 Identities=14% Similarity=0.229 Sum_probs=160.9
Q ss_pred cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec------CccccEEEEEe-CCCCeEEEEeC--CCe
Q 010816 192 HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS------GHTLAVTCVKW-GGDGVIYTGSQ--DCT 262 (500)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~------~h~~~v~~~~~-~~~~~l~t~~~--dg~ 262 (500)
+-....++++.+ ++..+++.+.++.|++||.. ++.+..+. ++...+..+++ .+++.++.+.. ++.
T Consensus 28 ~~~~p~~v~~~~-----~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~ 101 (286)
T 1q7f_A 28 QFTEPSGVAVNA-----QNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQ 101 (286)
T ss_dssp CBSCEEEEEECT-----TCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCE
T ss_pred ccCCCceEEECC-----CCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCE
Confidence 334456666654 34567777889999999987 55555443 34456788999 57787777664 899
Q ss_pred EEEEeCCCCeeEEEeec-CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeE
Q 010816 263 IKVWETTQGKLIRELKG-HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTM 341 (500)
Q Consensus 263 i~lwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v 341 (500)
|++|| .+++.+..+.. +......++++++ +..+++...++.|
T Consensus 102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~i 144 (286)
T 1q7f_A 102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNK------------------------------------GRIIVVECKVMRV 144 (286)
T ss_dssp EEEEC-TTSCEEEEECTTTCSCEEEEEECTT------------------------------------SCEEEEETTTTEE
T ss_pred EEEEC-CCCcEEEEecCccCCCceEEEEeCC------------------------------------CCEEEEECCCCEE
Confidence 99999 56776665532 2334566665543 2356666778899
Q ss_pred EEEcCCCCCCCceeee--cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCc--ccEEEEEeeeeeeec
Q 010816 342 FLWEPAVSKQPKTRMT--GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHV--GPVYQIRFELIYCFR 417 (500)
Q Consensus 342 ~~wd~~~~~~~~~~~~--~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~ 417 (500)
++||... .....+. ++...+..++++|+|+++++.+.++.|++||. +++.+..+..+. .....
T Consensus 145 ~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~---------- 211 (286)
T 1q7f_A 145 IIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIG---------- 211 (286)
T ss_dssp EEECTTS--CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEE----------
T ss_pred EEEcCCC--CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcE----------
Confidence 9999542 2222222 34456899999999998888888999999997 455555554321 22222
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCC-cEEEEECCCccccccccCcc--cCEEEEEEcCCCCEEEEEeCCCc
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDS-TLKVWDIRTQKLKQDLPGHA--DEVFAVDWSPDGEKVASGGKDRV 494 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~-~v~iwd~~~~~~~~~~~~h~--~~V~~l~~s~dg~~l~s~~~D~~ 494 (500)
++++++|+++++...++ .|++||.. ++.+..+..+. ..+.+++++|+|+.+++ +.|++
T Consensus 212 -----------------i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 212 -----------------VGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp -----------------EEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred -----------------EEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 36689999888888886 99999964 45555554433 34789999999987666 67999
Q ss_pred EEEec
Q 010816 495 LKLWM 499 (500)
Q Consensus 495 v~iW~ 499 (500)
|++|+
T Consensus 273 v~v~~ 277 (286)
T 1q7f_A 273 LYIYR 277 (286)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
No 177
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=5.9e-15 Score=138.69 Aligned_cols=274 Identities=11% Similarity=0.089 Sum_probs=177.5
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
..|.+++|++++..++..+.++.++.| .......+..+...+.+++|+++|++++++..++.|.+||..+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~- 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP- 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE-
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE-
Confidence 346778899998888877889999999 3445556667777889999999999888888899999999987764321
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCC----CcEEEEECCCCeEEEEec--CccccEEEEEeCCCCeEEEEeCC--
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKD----GDARIWDVSLRKCVICLS--GHTLAVTCVKWGGDGVIYTGSQD-- 260 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d----g~v~iwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~l~t~~~d-- 260 (500)
...+...+.++.|.| ++..+++...+ +.|.+||...+.....+. .+...+.++.+++++.++.++..
T Consensus 82 ~~~~~~~~~~i~~~~-----dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 156 (333)
T 2dg1_A 82 FVSHKANPAAIKIHK-----DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGY 156 (333)
T ss_dssp EECSSSSEEEEEECT-----TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCB
T ss_pred eeCCCCCcceEEECC-----CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecccc
Confidence 223445678888765 34456665555 689999988776543332 23456888889888876665543
Q ss_pred -----CeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe
Q 010816 261 -----CTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG 335 (500)
Q Consensus 261 -----g~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 335 (500)
+.|..+|..+++..
T Consensus 157 ~~~~~~~l~~~~~~~~~~~------------------------------------------------------------- 175 (333)
T 2dg1_A 157 STNPLGGVYYVSPDFRTVT------------------------------------------------------------- 175 (333)
T ss_dssp TTBCCEEEEEECTTSCCEE-------------------------------------------------------------
T ss_pred ccCCCceEEEEeCCCCEEE-------------------------------------------------------------
Confidence 23333332221110
Q ss_pred eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeee
Q 010816 336 SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELI 413 (500)
Q Consensus 336 s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~ 413 (500)
.+..+...+..++|+|+|+.|+ +.+.++.|++||..+ +..+..+.. .+..
T Consensus 176 -------------------~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~--- 227 (333)
T 2dg1_A 176 -------------------PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPY--- 227 (333)
T ss_dssp -------------------EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEE---
T ss_pred -------------------EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEE---
Confidence 0111122367899999998654 555678999999864 433322110 0000
Q ss_pred eeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc------cCEEEEEEcCCCCEEE
Q 010816 414 YCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVA 487 (500)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~V~~l~~s~dg~~l~ 487 (500)
.... ......++++++|+++++...++.|.+||.. ++.+..+..+. ..+.+++|+||++.|+
T Consensus 228 ---~~~~--------~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 228 ---YFTG--------HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp ---ECCS--------SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred ---ecCC--------CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 0000 0011224678999988888888999999984 44444443332 2688999999988887
Q ss_pred EEeCC
Q 010816 488 SGGKD 492 (500)
Q Consensus 488 s~~~D 492 (500)
.++.+
T Consensus 296 v~~~~ 300 (333)
T 2dg1_A 296 ICSND 300 (333)
T ss_dssp EEEEC
T ss_pred EEeCc
Confidence 66555
No 178
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=1.4e-12 Score=120.11 Aligned_cols=281 Identities=8% Similarity=0.024 Sum_probs=179.5
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
..+...+.+++++++|++.++...++.|.+||.. +... .....+...+.++++.++|.+.++...++.|..||.. ++
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~ 88 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GI 88 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc
Confidence 3455679999999999988877778999999988 4332 2223345779999999999988887778999999986 43
Q ss_pred cccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEe-CCC
Q 010816 184 PSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGS-QDC 261 (500)
Q Consensus 184 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~-~dg 261 (500)
.....+......+.++.+.+ ++..+++...++.|..||. .++... ....+...+..+++.+++.++.+. .++
T Consensus 89 ~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~ 162 (299)
T 2z2n_A 89 IKEYTLPNPDSAPYGITEGP-----NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNN 162 (299)
T ss_dssp EEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT
T ss_pred EEEEeCCCcCCCceeeEECC-----CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCC
Confidence 22111222334556666543 3456666667889999998 444332 233344567889999888777665 468
Q ss_pred eEEEEeCCCCeeEEE-eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 262 TIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
.|..||. +++.... +......+..+++.++ +...++...++.
T Consensus 163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~------------------------------------g~l~v~~~~~~~ 205 (299)
T 2z2n_A 163 AIGRITE-SGDITEFKIPTPASGPVGITKGND------------------------------------DALWFVEIIGNK 205 (299)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTE
T ss_pred EEEEEcC-CCcEEEeeCCCCCCcceeEEECCC------------------------------------CCEEEEccCCce
Confidence 9999998 6655432 2222333445554432 234555556788
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYP 419 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~ 419 (500)
|..||. ...........+...+.+++++++|++.++...++.|..||. +++.... +..+...+..
T Consensus 206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~------------ 271 (299)
T 2z2n_A 206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHG------------ 271 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEE------------
T ss_pred EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccce------------
Confidence 999987 332111112234467899999999997777667889999998 4543221 1122222222
Q ss_pred CCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCc
Q 010816 420 SNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQ 461 (500)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~ 461 (500)
+++ ++|++.++.+ .+.+..++.+++
T Consensus 272 ---------------i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 272 ---------------ICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp ---------------EEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred ---------------EEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 256 7787776655 566777776554
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.67 E-value=2.5e-14 Score=135.17 Aligned_cols=254 Identities=11% Similarity=0.133 Sum_probs=163.6
Q ss_pred CCEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCC--
Q 010816 151 NWVLCIAWSADGKHLVSGS---------KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKD-- 219 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-- 219 (500)
..+..+++ ||+.++... .++.|.+||+.+++... + ..+..+.|+| ++++++..+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--l----~~~~~~~~Sp-----Dg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--I----ENATMPRISP-----DGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--E----ESCEEEEECT-----TSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--c----ccCCCeEECC-----CCCEEEEEEeccC
Confidence 34667777 888877542 36689999998876422 2 4466778876 55677766643
Q ss_pred -C--cEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EEEEeC---------------------------CCeEEEEeC
Q 010816 220 -G--DARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IYTGSQ---------------------------DCTIKVWET 268 (500)
Q Consensus 220 -g--~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~t~~~---------------------------dg~i~lwd~ 268 (500)
+ .|++||+..++.......+. +.++.|++|+. |+.++. ...|.+||+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~ 159 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDT 159 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEET
T ss_pred CCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEEC
Confidence 2 47888988877655444333 89999999874 555543 257899999
Q ss_pred CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC---------C
Q 010816 269 TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD---------F 339 (500)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d---------~ 339 (500)
.+++.++.+.. . .+..+.++++. .+++++.+ .
T Consensus 160 ~~~~~~~~l~~-~-~~~~~~~spdg-------------------------------------~~~~~~~~~~~~~~~~~~ 200 (347)
T 2gop_A 160 ESEEVIEEFEK-P-RFSSGIWHRDK-------------------------------------IVVNVPHREIIPQYFKFW 200 (347)
T ss_dssp TTTEEEEEEEE-E-TTCEEEEETTE-------------------------------------EEEEEECCCSSCCSSCCE
T ss_pred CCCeEEeeecC-C-CcccccCCCCe-------------------------------------EEEEEecccccccccccc
Confidence 88876454443 2 56667777654 23333222 1
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC--------CcEEEEeCCCCceEEEEeCCcccEEEEEee
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD--------KSIKLWNGTTGKFVAVFRGHVGPVYQIRFE 411 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D--------g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~ 411 (500)
.|.++| .. ....+..+ ..+..+ +|||++|+.++.+ ..|++|| +++......+|...+..
T Consensus 201 ~l~~~d---~~-~~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~---- 267 (347)
T 2gop_A 201 DIYIWE---DG-KEEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQ---- 267 (347)
T ss_dssp EEEEEE---TT-EEEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEE----
T ss_pred cEEEeC---CC-ceEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCC----
Confidence 344444 22 22333334 445444 9999999887754 3688888 56554444444444432
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeC
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.+.|+ ++ ++++++.++.++|| +.+++... +..+...|.+++|+| ..+++++.
T Consensus 268 ----------------------~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~ 319 (347)
T 2gop_A 268 ----------------------AKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKET 319 (347)
T ss_dssp ----------------------EEEET-TE-EEEEEEETTEEEEE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEEC
T ss_pred ----------------------ccEEc-Cc-EEEEEecCCcEEEE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcC
Confidence 12678 88 99999999999999 87555433 334567899999999 67777777
Q ss_pred CCcE-EEec
Q 010816 492 DRVL-KLWM 499 (500)
Q Consensus 492 D~~v-~iW~ 499 (500)
+++. .||.
T Consensus 320 ~~~~~~l~~ 328 (347)
T 2gop_A 320 ATRLRELFT 328 (347)
T ss_dssp SSSCCEEEE
T ss_pred CCChHHheE
Confidence 7654 6663
No 180
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=2.2e-14 Score=148.66 Aligned_cols=273 Identities=14% Similarity=0.044 Sum_probs=167.5
Q ss_pred CCCCeEEEEeCCC---cEEEE--eCCCCceeEEe------cCCCCCEEEEEEcCCCCEEE-----EEeCCCeEEEEeCCC
Q 010816 118 PDGRQLASGSGDT---TVRLW--DLNTQTPMFKC------TGHKNWVLCIAWSADGKHLV-----SGSKAGELQCWDPQT 181 (500)
Q Consensus 118 p~~~~lat~~~d~---~i~iw--d~~~~~~~~~~------~~h~~~v~~v~~s~~~~~l~-----s~~~d~~i~~wd~~~ 181 (500)
|+|++++....++ .-.|| +..++.....+ .+|...+..++|||||++|| +|+.+..|++||+.+
T Consensus 77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t 156 (695)
T 2bkl_A 77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS 156 (695)
T ss_dssp EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence 6788777665433 34455 44344332222 24666799999999999998 455567899999999
Q ss_pred CCcc-cccccCcccceEEEEeeeeecCCCCceEEEEeCCCc-------------EEEEECCCCe----EEEEecCccccE
Q 010816 182 GKPS-GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD-------------ARIWDVSLRK----CVICLSGHTLAV 243 (500)
Q Consensus 182 ~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~-------------v~iwd~~~~~----~~~~~~~h~~~v 243 (500)
|+.. ...+.... ..++.|+| +++.|+.++.|.. |++|++.++. ++.....|...+
T Consensus 157 g~~~~~~~~~~~~--~~~~~wsp-----Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~ 229 (695)
T 2bkl_A 157 GEWSKVDVIEGGK--YATPKWTP-----DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTF 229 (695)
T ss_dssp CCBCSSCCBSCCT--TCCCEECT-----TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCE
T ss_pred CCCcCCcccCccc--ccceEEec-----CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEE
Confidence 8754 22222111 15678876 5568888888776 9999998765 444444566778
Q ss_pred EEEEeCCCCe-EEEEeCCC----eEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 244 TCVKWGGDGV-IYTGSQDC----TIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 244 ~~~~~~~~~~-l~t~~~dg----~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
..+.|++||. |+.++.++ .|.+||..++... .+..+...+....++ +
T Consensus 230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~~-~-------------------------- 281 (695)
T 2bkl_A 230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHAW-K-------------------------- 281 (695)
T ss_dssp EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEEE-T--------------------------
T ss_pred EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEec-C--------------------------
Confidence 8999999984 55555444 6777776555433 333222222222221 1
Q ss_pred HhhhhhcCCCCcEEEEee---CCCeEEEEcCCCCCCC-ceeeecc--cCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-C
Q 010816 319 ERYNKIKGNAPERLVSGS---DDFTMFLWEPAVSKQP-KTRMTGH--QQLVNHVYFSPDGQWVASASFDKSIKLWNGT-T 391 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s---~d~~v~~wd~~~~~~~-~~~~~~h--~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~ 391 (500)
+..++.+. .++.|.+||+...... ...+..+ ...+..++|+ ++.++++...|+..+||... +
T Consensus 282 ----------g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~ 350 (695)
T 2bkl_A 282 ----------DRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK 350 (695)
T ss_dssp ----------TEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT
T ss_pred ----------CcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC
Confidence 22233333 3578999997654310 1233333 4457888888 77888999999998888654 3
Q ss_pred CceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE----CCCcEEEEECCCccc
Q 010816 392 GKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS----KDSTLKVWDIRTQKL 463 (500)
Q Consensus 392 ~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s----~d~~v~iwd~~~~~~ 463 (500)
|+....+..+ .+.+ ..++++|++..++... ..++|++||+.+++.
T Consensus 351 g~~~~~l~~~~~~~v---------------------------~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 351 GKPVRTVQLPGVGAA---------------------------SNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp CCEEEECCCSSSSEE---------------------------CCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCeeEEecCCCCeEE---------------------------EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 4444433332 2222 2225678887666332 347899999987653
No 181
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.64 E-value=3.7e-14 Score=134.51 Aligned_cols=252 Identities=13% Similarity=0.132 Sum_probs=156.0
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC------CCCEEEEEEcCCCCEEEE
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH------KNWVLCIAWSADGKHLVS 167 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~l~s 167 (500)
+..+..+ .++|+|||++|++++ .+++|.+||..+.+.+..+... ......++|+|||++|++
T Consensus 47 i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v 124 (361)
T 2oiz_A 47 VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVL 124 (361)
T ss_dssp EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEE
T ss_pred ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEE
Confidence 3334455 899999999999886 3678999999988877665422 345677999999999998
Q ss_pred EeC--CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEE------ecC
Q 010816 168 GSK--AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVIC------LSG 238 (500)
Q Consensus 168 ~~~--d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~------~~~ 238 (500)
+.. +++|.+||+.+++.....+... . ...+.+.|. ....+++.+.||.+.+|+... ++.... +..
T Consensus 125 ~n~~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~----~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 125 QNASPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPN----RPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp EEESSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTT----SSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred ECCCCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCC----CCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 864 5899999999886543201111 1 111222231 125788899999999999865 443311 111
Q ss_pred ccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCee--EEEeecCC------ceE----EEEEecCcceeeeccccCCCC
Q 010816 239 HTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKL--IRELKGHG------HWV----NSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 239 h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~--~~~~~~~~------~~v----~~~~~~~~~~~~~~~~~~~~~ 305 (500)
+..++ .+.+.+++ .++..+.++.+.++|+..+.. ...+.... .+. ..++++++
T Consensus 199 ~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d------------- 264 (361)
T 2oiz_A 199 KDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA------------- 264 (361)
T ss_dssp TTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT-------------
T ss_pred CCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC-------------
Confidence 11111 01112222 455667889999999865432 11111000 000 00122221
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEe-e----------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSG-S----------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQW 374 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-s----------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~ 374 (500)
+.+++.+ + ..++|.+||....+ ....+..+. +.+++|+|||++
T Consensus 265 -----------------------g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-~v~~i~~~~--p~~ia~spdg~~ 318 (361)
T 2oiz_A 265 -----------------------SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-RVARIPGRD--ALSMTIDQQRNL 318 (361)
T ss_dssp -----------------------TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-EEEEEECTT--CCEEEEETTTTE
T ss_pred -----------------------CCeEEEEEccCCCcccccCCCceEEEEECCCCc-EEEEEecCC--eeEEEECCCCCE
Confidence 1233332 2 13479999976543 344455555 899999999999
Q ss_pred EEEEeCCCcEEEEeCCCC--ceEEEEeCCccc
Q 010816 375 VASASFDKSIKLWNGTTG--KFVAVFRGHVGP 404 (500)
Q Consensus 375 lasgs~Dg~i~lwd~~~~--~~~~~~~~h~~~ 404 (500)
|++++. +.|.+||..++ +.+..+..+...
T Consensus 319 l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~ 349 (361)
T 2oiz_A 319 MLTLDG-GNVNVYDISQPEPKLLRTIEGAAEA 349 (361)
T ss_dssp EEEECS-SCEEEEECSSSSCEEEEEETTSCSS
T ss_pred EEEeCC-CeEEEEECCCCcceeeEEeccCCCC
Confidence 998887 99999999999 888876544433
No 182
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.64 E-value=5.3e-12 Score=116.24 Aligned_cols=276 Identities=11% Similarity=0.053 Sum_probs=176.6
Q ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 148 GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
.+...+.++.+.++|.+.++...++.|..||.. ++........+...+.++.+.+ ++..+++...++.|..||.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~ 85 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISS-----DGEVWFTENAANKIGRITK 85 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECT
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECC-----CCCEEEeCCCCCeEEEECC
Confidence 345678999999999988877778999999988 5533222222345566776653 3455666666788999998
Q ss_pred CCCeEEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCC
Q 010816 228 SLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 228 ~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
........+......+.++++.+++.++.+. .++.|..||. +++..... ......+..+++.++
T Consensus 86 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~------------- 151 (299)
T 2z2n_A 86 KGIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSD------------- 151 (299)
T ss_dssp TSCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred CCcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCC-------------
Confidence 6332222222344568889999888766654 5789999998 55543322 222334455554432
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~ 385 (500)
+...++...++.|..||. ...........+...+.+++++++|.+.++...++.|.
T Consensus 152 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~ 207 (299)
T 2z2n_A 152 -----------------------NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIG 207 (299)
T ss_dssp -----------------------SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -----------------------CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEE
Confidence 234455556788999987 32211111223345688999999999877777788999
Q ss_pred EEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc
Q 010816 386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK 464 (500)
Q Consensus 386 lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~ 464 (500)
+||. +++.... ...+...+.. ++++++|++.++...++.|.+||.. ++..
T Consensus 208 ~~~~-~g~~~~~~~~~~~~~~~~---------------------------i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~ 258 (299)
T 2z2n_A 208 RITT-SGEITEFKIPTPNARPHA---------------------------ITAGAGIDLWFTEWGANKIGRLTSN-NIIE 258 (299)
T ss_dssp EECT-TCCEEEEECSSTTCCEEE---------------------------EEECSTTCEEEEETTTTEEEEEETT-TEEE
T ss_pred EECC-CCcEEEEECCCCCCCcee---------------------------EEECCCCCEEEeccCCceEEEECCC-CceE
Confidence 9998 6664321 1112222333 2568899877766678899999984 4332
Q ss_pred c-cccCcccCEEEEEEcCCCCEEEEEeCCCcEEE
Q 010816 465 Q-DLPGHADEVFAVDWSPDGEKVASGGKDRVLKL 497 (500)
Q Consensus 465 ~-~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~i 497 (500)
. .++.+...+.++.+ ++|+..++.+.++.+++
T Consensus 259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 259 EYPIQIKSAEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp EEECSSSSCCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred EEeCCCCCCccceEEe-cCCCEEEEecCCcEEEE
Confidence 2 23455567899999 88887777665555554
No 183
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.63 E-value=2.6e-13 Score=141.06 Aligned_cols=274 Identities=11% Similarity=0.074 Sum_probs=171.8
Q ss_pred CCCCeEEEEeCC-C----cEEEEeCCCCceeEEe------cCCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCC
Q 010816 118 PDGRQLASGSGD-T----TVRLWDLNTQTPMFKC------TGHKNWVLCIAWSADGKHLVSGSKAG-----ELQCWDPQT 181 (500)
Q Consensus 118 p~~~~lat~~~d-~----~i~iwd~~~~~~~~~~------~~h~~~v~~v~~s~~~~~l~s~~~d~-----~i~~wd~~~ 181 (500)
|+|++++-...+ + .+.+.+..++.....+ .+|...+..++|||||++||.++.++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 778777654322 1 2333343333332111 23445688999999999998766543 899999998
Q ss_pred CCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc----------------EEEEECCCCe----EEEEecCccc
Q 010816 182 GKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD----------------ARIWDVSLRK----CVICLSGHTL 241 (500)
Q Consensus 182 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~----------------v~iwd~~~~~----~~~~~~~h~~ 241 (500)
++.....+. ...+.++.|+| +++.|+.++.++. |++|++.+++ .+.....|..
T Consensus 161 g~~~~~~~~--~~~~~~~~wsp-----Dg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~ 233 (710)
T 2xdw_A 161 AKELPDVLE--RVKFSCMAWTH-----DGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPK 233 (710)
T ss_dssp TEEEEEEEE--EECSCCEEECT-----TSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTT
T ss_pred CCCCccccc--CcccceEEEEe-----CCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCe
Confidence 875432221 12256688876 5567888877766 9999998765 3333334566
Q ss_pred cEEEEEeCCCCe-EEEEeC-----CCeEEEEeCCC------Ce-eEEEeecCCceEEEEEecCcceeeeccccCCCCCCC
Q 010816 242 AVTCVKWGGDGV-IYTGSQ-----DCTIKVWETTQ------GK-LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYS 308 (500)
Q Consensus 242 ~v~~~~~~~~~~-l~t~~~-----dg~i~lwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 308 (500)
.+..+.|++|+. |+.++. +..|.+||+.+ +. ....+..+...+... ++++
T Consensus 234 ~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~d---------------- 296 (710)
T 2xdw_A 234 WMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNE---------------- 296 (710)
T ss_dssp CEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEE----------------
T ss_pred EEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEE-Eecc----------------
Confidence 678899999984 444443 57899999876 43 244444443333221 2221
Q ss_pred CHHHHHHHHHHhhhhhcCCCCcEEEEeeC----CCeEEEEcCCCCCC-CceeeecccC--cEEEEEECCCCCEEEEEeCC
Q 010816 309 SPEEMKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSKQ-PKTRMTGHQQ--LVNHVYFSPDGQWVASASFD 381 (500)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~s~s~----d~~v~~wd~~~~~~-~~~~~~~h~~--~v~~l~~sp~g~~lasgs~D 381 (500)
+..++..+. .+.|.+||+..... ....+..|.. .+..++|++++.++++...|
T Consensus 297 --------------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 297 --------------------GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp --------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred --------------------CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 223333332 34688999765431 1234455544 68889999888889999989
Q ss_pred Cc--EEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-E---CCCcEEE
Q 010816 382 KS--IKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-S---KDSTLKV 455 (500)
Q Consensus 382 g~--i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s---~d~~v~i 455 (500)
+. |++||+.+|+.+..+..+.+.+..+ +++|++..++.. + ..++|++
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~---------------------------~~s~d~~~l~~~~ss~~~P~~i~~ 409 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGY---------------------------SGQKKDTEIFYQFTSFLSPGIIYH 409 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEE---------------------------ECCTTCSEEEEEEECSSCCCEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEE---------------------------ecCCCCCEEEEEEeCCCCCCEEEE
Confidence 84 6667877787776666665544443 457888655533 3 3478999
Q ss_pred EECCCcc
Q 010816 456 WDIRTQK 462 (500)
Q Consensus 456 wd~~~~~ 462 (500)
||+.+++
T Consensus 410 ~d~~tg~ 416 (710)
T 2xdw_A 410 CDLTKEE 416 (710)
T ss_dssp EETTSSS
T ss_pred EECCCCc
Confidence 9998766
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=5.3e-12 Score=125.99 Aligned_cols=315 Identities=14% Similarity=0.050 Sum_probs=195.5
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC--CCCcccccccCccc
Q 010816 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ--TGKPSGNPLSGHKK 194 (500)
Q Consensus 117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~ 194 (500)
+|.+.++++...+++|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+. +++.......+.
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-- 240 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-- 240 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--
Confidence 34555677778899999999999988877653 3356799999999999999999999999995 555433222221
Q ss_pred ceEEEEeeeeecCCCCceEE-EEeCCCcEEEEECCCCeEEEEecC----------ccc-cEEEEEeCCCC--eEEEEeCC
Q 010816 195 WITGISWEPVHLNAPCRRFV-SASKDGDARIWDVSLRKCVICLSG----------HTL-AVTCVKWGGDG--VIYTGSQD 260 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~~~-s~s~dg~v~iwd~~~~~~~~~~~~----------h~~-~v~~~~~~~~~--~l~t~~~d 260 (500)
.-..+.+++.. ..++++++ +...++++.++|..+.+.+..+.- |.. .+..+..++++ .++....+
T Consensus 241 ~P~~ia~s~~~-~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~ 319 (567)
T 1qks_A 241 EARSIETSKME-GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET 319 (567)
T ss_dssp EEEEEEECCST-TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred CCceeEEcccc-CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCC
Confidence 23455555200 01444554 455669999999999888766542 112 46677777654 35556677
Q ss_pred CeEEEEeCCCCeeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCC
Q 010816 261 CTIKVWETTQGKLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDD 338 (500)
Q Consensus 261 g~i~lwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d 338 (500)
|.|.++|..+.+.+.... ........+.++++ +.+ +++...+
T Consensus 320 g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pd------------------------------------gr~~~va~~~s 363 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGS------------------------------------HRYFITAANAR 363 (567)
T ss_dssp TEEEEEETTCSSEEEEEEEECCSSEEEEEECTT------------------------------------SCEEEEEEGGG
T ss_pred CeEEEEecCCCccceeeeeeccccccCceECCC------------------------------------CCEEEEEeCCC
Confidence 999999987654322111 11222333344432 223 4455567
Q ss_pred CeEEEEcCCCCCCCceeee----cccCcEEEEEECCCCC-EEEEEe-CCCcEEEEeCCC-------CceEEEEeCCcccE
Q 010816 339 FTMFLWEPAVSKQPKTRMT----GHQQLVNHVYFSPDGQ-WVASAS-FDKSIKLWNGTT-------GKFVAVFRGHVGPV 405 (500)
Q Consensus 339 ~~v~~wd~~~~~~~~~~~~----~h~~~v~~l~~sp~g~-~lasgs-~Dg~i~lwd~~~-------~~~~~~~~~h~~~v 405 (500)
+.|.++|....+....... .|...-..+ ++|++. ..+++. .++.|.++|..+ .+.+.++++....-
T Consensus 364 n~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~ 442 (567)
T 1qks_A 364 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS 442 (567)
T ss_dssp TEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC
T ss_pred CeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCC
Confidence 8999999875432211112 243222122 688754 445553 468999999987 44555554331110
Q ss_pred EEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEEC-------CCcEEEEECCCc-----ccc-ccc-----
Q 010816 406 YQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSK-------DSTLKVWDIRTQ-----KLK-QDL----- 467 (500)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-------d~~v~iwd~~~~-----~~~-~~~----- 467 (500)
.-+..+|++++|.+... .++|.++|+.+. ... +.+
T Consensus 443 ---------------------------~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~ 495 (567)
T 1qks_A 443 ---------------------------LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEW 495 (567)
T ss_dssp ---------------------------CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHH
T ss_pred ---------------------------EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccc
Confidence 00135899999988763 358999998876 211 222
Q ss_pred ---cCcccCEEEEEEcCCCCEEEEEe-----CCCcEEEec
Q 010816 468 ---PGHADEVFAVDWSPDGEKVASGG-----KDRVLKLWM 499 (500)
Q Consensus 468 ---~~h~~~V~~l~~s~dg~~l~s~~-----~D~~v~iW~ 499 (500)
..-..++..+.|+|+|+++..+. .++.|.+.+
T Consensus 496 ~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 496 AGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp HTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 11235789999999999886653 267787765
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=9.9e-13 Score=121.23 Aligned_cols=229 Identities=12% Similarity=0.080 Sum_probs=154.3
Q ss_pred cccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCC
Q 010816 192 HKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETT 269 (500)
Q Consensus 192 ~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~ 269 (500)
+.....++.|.|. ++ .++++..++.|..||...+ ...+..+...+.++++++++.++.+.. ++.|.+||..
T Consensus 26 ~~~~~eg~~~d~~-----g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 26 GFTWTEGPVYVPA-----RSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp CCSSEEEEEEEGG-----GTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred CCccccCCeEeCC-----CCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 3445677888763 33 6788888999999999887 555666777789999999987766664 5899999998
Q ss_pred CCeeEEEeecCC----ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE----ee-----
Q 010816 270 QGKLIRELKGHG----HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GS----- 336 (500)
Q Consensus 270 ~~~~~~~~~~~~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~s----- 336 (500)
+++......... ..+..++++++. ..+++ |+
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G------------------------------------~l~vtd~~~g~~~~~~ 142 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDG------------------------------------SLWFSDPTYGIDKPEE 142 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTS------------------------------------CEEEEECSHHHHCGGG
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCC------------------------------------CEEEECCccccccccc
Confidence 877543322111 122334444432 23333 22
Q ss_pred --------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-CCce---EEEEeCCccc
Q 010816 337 --------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT-TGKF---VAVFRGHVGP 404 (500)
Q Consensus 337 --------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~-~~~~---~~~~~~h~~~ 404 (500)
..+.|..++.. .....+..+....+.++|+|+|+.|++.+.++.|++|++. +|++ ...+..+.+
T Consensus 143 ~~~~~~~~~~~~l~~~~~~---g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~- 218 (296)
T 3e5z_A 143 GYGGEMELPGRWVFRLAPD---GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPG- 218 (296)
T ss_dssp SSCCCCCSSSCEEEEECTT---SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSS-
T ss_pred cccccccCCCcEEEEECCC---CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCC-
Confidence 13456666643 2233445566678999999999988777888999999986 4543 122211111
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEE-cCCC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDW-SPDG 483 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~-s~dg 483 (500)
....++++++|++.++. ++.|.+||.. ++.+..+..+.. +.+++| +|++
T Consensus 219 --------------------------~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~ 268 (296)
T 3e5z_A 219 --------------------------KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEG 268 (296)
T ss_dssp --------------------------CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTS
T ss_pred --------------------------CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCC
Confidence 11223678999877766 8899999986 666666666666 899999 6899
Q ss_pred CEEEEEeCCCcEEE
Q 010816 484 EKVASGGKDRVLKL 497 (500)
Q Consensus 484 ~~l~s~~~D~~v~i 497 (500)
+.|+.++.++..++
T Consensus 269 ~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 269 RTLYMTVSTEFWSI 282 (296)
T ss_dssp CEEEEEETTEEEEE
T ss_pred CEEEEEcCCeEEEE
Confidence 99999998876654
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=4.9e-14 Score=146.05 Aligned_cols=244 Identities=11% Similarity=-0.011 Sum_probs=157.7
Q ss_pred cCCcccEEEEEEcCCCCeEE-----EEeCCCcEEEEeCCCCceeEEecCCCCCE--EEEEEcCCCCEEEEEeCCCe----
Q 010816 105 AGHTEAVLSVAFSPDGRQLA-----SGSGDTTVRLWDLNTQTPMFKCTGHKNWV--LCIAWSADGKHLVSGSKAGE---- 173 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~la-----t~~~d~~i~iwd~~~~~~~~~~~~h~~~v--~~v~~s~~~~~l~s~~~d~~---- 173 (500)
.+|...+.+++|||||++|| .|+.+.+|++||+.+++.+. ..+-..+ ..++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIK 194 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCc
Confidence 46777899999999999999 34445789999999987641 1122222 67999999999999988776
Q ss_pred ---------EEEEeCCCCCcccc---cccCcccceEEEEeeeeecCCCCceEEEEeCCC----cEEEEECCCCeEEEEec
Q 010816 174 ---------LQCWDPQTGKPSGN---PLSGHKKWITGISWEPVHLNAPCRRFVSASKDG----DARIWDVSLRKCVICLS 237 (500)
Q Consensus 174 ---------i~~wd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg----~v~iwd~~~~~~~~~~~ 237 (500)
|++|++.++..... ....+...+.++.|+| +++.++.++.++ .|++||...+... .+.
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~ 268 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR-----DGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV 268 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT-----TSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC-----CCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee
Confidence 99999988753211 1223445677788776 556777666555 6777776554433 233
Q ss_pred CccccEEEEEeCCCCeEEEEeC----CCeEEEEeCCCCee---EEEeecC-CceEEEEEecCcceeeeccccCCCCCCCC
Q 010816 238 GHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQGKL---IRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSS 309 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~~l~t~~~----dg~i~lwd~~~~~~---~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (500)
.+...+....+..++ ++..+. ++.|.+||+.++.. ...+..+ ...+..+++..
T Consensus 269 ~~~~~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~------------------ 329 (695)
T 2bkl_A 269 KGVGAKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVG------------------ 329 (695)
T ss_dssp ECSSCCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEET------------------
T ss_pred cCCCceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEEC------------------
Confidence 343344444454444 544443 57899999877652 2223222 33455554431
Q ss_pred HHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc-cCcEEEEEECCCCCEEEEE----eCCCcE
Q 010816 310 PEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH-QQLVNHVYFSPDGQWVASA----SFDKSI 384 (500)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h-~~~v~~l~~sp~g~~lasg----s~Dg~i 384 (500)
...+++...|+..++|...........+..+ ...+..++++|+++.++.. ...++|
T Consensus 330 -------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v 390 (695)
T 2bkl_A 330 -------------------GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQI 390 (695)
T ss_dssp -------------------TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEE
T ss_pred -------------------CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 2357788889988888654222222333333 5667888999999777633 234789
Q ss_pred EEEeCCCCce
Q 010816 385 KLWNGTTGKF 394 (500)
Q Consensus 385 ~lwd~~~~~~ 394 (500)
++||+.+++.
T Consensus 391 ~~~d~~~g~~ 400 (695)
T 2bkl_A 391 YKTSVSTGKS 400 (695)
T ss_dssp EEEETTTCCE
T ss_pred EEEECCCCcE
Confidence 9999998874
No 187
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.58 E-value=3.4e-13 Score=140.16 Aligned_cols=245 Identities=14% Similarity=0.078 Sum_probs=160.0
Q ss_pred cCCcccEEEEEEcCCCCeEEEEeCCC-----cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe------
Q 010816 105 AGHTEAVLSVAFSPDGRQLASGSGDT-----TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------ 173 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~~~d~-----~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~------ 173 (500)
.+|...+..++|||||++||.++.++ .|++||+.+++.......+ ..+..++|+|||+.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDG 199 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccc
Confidence 35666789999999999999775433 8999999998765432222 22667999999999999888766
Q ss_pred ----------EEEEeCCCCCccccc---ccCcccceEEEEeeeeecCCCCceEEEEeC-----CCcEEEEECCC------
Q 010816 174 ----------LQCWDPQTGKPSGNP---LSGHKKWITGISWEPVHLNAPCRRFVSASK-----DGDARIWDVSL------ 229 (500)
Q Consensus 174 ----------i~~wd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~-----dg~v~iwd~~~------ 229 (500)
|.+|++.++...... ...|...+.++.|+| +++.++..+. +..|++||+.+
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~ 274 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-----DGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-----CCCEEEEEEEccCCCccEEEEEECcccccccC
Confidence 999999877532111 122445567777766 5566666554 57899999976
Q ss_pred Ce-EEEEecCccccEEEEEeCCCC-eEEEEeC----CCeEEEEeCCCCe--eEEEeecCCc--eEEEEEecCcceeeecc
Q 010816 230 RK-CVICLSGHTLAVTCVKWGGDG-VIYTGSQ----DCTIKVWETTQGK--LIRELKGHGH--WVNSLALSTEYALRTGA 299 (500)
Q Consensus 230 ~~-~~~~~~~h~~~v~~~~~~~~~-~l~t~~~----dg~i~lwd~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~~~~~ 299 (500)
+. ....+..+...+... |++++ .|+..+. .+.|.+||+.++. ..+.+..+.. .+..+.+.+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------- 346 (710)
T 2xdw_A 275 GILKWVKLIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS------- 346 (710)
T ss_dssp SSCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT-------
T ss_pred CccceEEeeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC-------
Confidence 42 344455555544443 55544 4544443 2369999998764 2344433332 4555555422
Q ss_pred ccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe--EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE
Q 010816 300 FDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT--MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS 377 (500)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~--v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las 377 (500)
...+++...|+. |.+|++.... ....+..+...+..++++|++..++.
T Consensus 347 -----------------------------~~lv~~~~~~g~~~l~~~~~~~g~-~~~~l~~~~~~v~~~~~s~d~~~l~~ 396 (710)
T 2xdw_A 347 -----------------------------NFLVLCYLHDVKNTLQLHDLATGA-LLKIFPLEVGSVVGYSGQKKDTEIFY 396 (710)
T ss_dssp -----------------------------TEEEEEEEETTEEEEEEEETTTCC-EEEEECCCSSEEEEEECCTTCSEEEE
T ss_pred -----------------------------CEEEEEEEECCEEEEEEEECCCCC-EEEecCCCCceEEEEecCCCCCEEEE
Confidence 235677777875 4556653322 23445566777899999999876653
Q ss_pred E-e---CCCcEEEEeCCCCc
Q 010816 378 A-S---FDKSIKLWNGTTGK 393 (500)
Q Consensus 378 g-s---~Dg~i~lwd~~~~~ 393 (500)
. + ..+.|++||+.+++
T Consensus 397 ~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 397 QFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECSSCCCEEEEEETTSSS
T ss_pred EEeCCCCCCEEEEEECCCCc
Confidence 3 2 24789999998887
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.57 E-value=2.4e-12 Score=120.40 Aligned_cols=255 Identities=9% Similarity=0.026 Sum_probs=168.0
Q ss_pred CCCeEEEEeCCCCCcccccccC-----cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEE
Q 010816 170 KAGELQCWDPQTGKPSGNPLSG-----HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVT 244 (500)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~ 244 (500)
.++.|.++|.++++........ ......++.+. ....+++...++.|.+||..+++.+..+.. .....
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~------~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~ 87 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR------DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPR 87 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE------TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE------CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCc
Confidence 4889999999988754322111 11223444432 234667777789999999999998877753 34567
Q ss_pred EEEeCCCCeEEEEe-CCCeEEEEeCCCCeeEEEeecCCc-----eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 245 CVKWGGDGVIYTGS-QDCTIKVWETTQGKLIRELKGHGH-----WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 245 ~~~~~~~~~l~t~~-~dg~i~lwd~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
.+++++++.++.+. .++.|.+||..+++....+..... ....+++.
T Consensus 88 ~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~---------------------------- 139 (328)
T 3dsm_A 88 YIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQY---------------------------- 139 (328)
T ss_dssp EEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEE----------------------------
T ss_pred EEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEE----------------------------
Confidence 88887778877776 899999999999887766543220 11122221
Q ss_pred HhhhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC----------CcEEEE
Q 010816 319 ERYNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD----------KSIKLW 387 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D----------g~i~lw 387 (500)
....+++.. .++.|.++|+...... ..+.. ......++++|+|++++++..+ +.|.++
T Consensus 140 ---------~~~lyv~~~~~~~~v~viD~~t~~~~-~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i 208 (328)
T 3dsm_A 140 ---------GKYVYVNCWSYQNRILKIDTETDKVV-DELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI 208 (328)
T ss_dssp ---------TTEEEEEECTTCCEEEEEETTTTEEE-EEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred ---------CCEEEEEcCCCCCEEEEEECCCCeEE-EEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence 112334433 4889999997654322 22221 2235678999999987777655 789999
Q ss_pred eCCCCceEEEEeCCcc-cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccc-
Q 010816 388 NGTTGKFVAVFRGHVG-PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ- 465 (500)
Q Consensus 388 d~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~- 465 (500)
|..+++....+....+ ... .++++|+++.|+.+.. .|.+||..+++...
T Consensus 209 d~~t~~v~~~~~~~~g~~p~---------------------------~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 209 DAETFTVEKQFKFKLGDWPS---------------------------EVQLNGTRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp ETTTTEEEEEEECCTTCCCE---------------------------EEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred ECCCCeEEEEEecCCCCCce---------------------------eEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence 9999887765542211 112 2367999998888765 89999998877642
Q ss_pred -cccCcccCEEEEEEcCC-CCEEEEE----eCCCcEEEec
Q 010816 466 -DLPGHADEVFAVDWSPD-GEKVASG----GKDRVLKLWM 499 (500)
Q Consensus 466 -~~~~h~~~V~~l~~s~d-g~~l~s~----~~D~~v~iW~ 499 (500)
.+..+......++++|+ ++..++. ..+++|.+|+
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred eeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 12222456889999995 5555555 5688999986
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=7.4e-12 Score=117.41 Aligned_cols=160 Identities=9% Similarity=0.046 Sum_probs=108.8
Q ss_pred ccCCcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeC
Q 010816 104 IAGHTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDP 179 (500)
Q Consensus 104 ~~gh~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d----~~i~~wd~ 179 (500)
+.++...+.+++|+|+|++++++..++.|.+||..+++.......+...+.+++|+++|+++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 34566677899999999988888889999999998876544333566789999999999988877766 68999999
Q ss_pred CCCCcccccc-cCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCC
Q 010816 180 QTGKPSGNPL-SGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG 252 (500)
Q Consensus 180 ~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 252 (500)
.++....... ..+...+.++.+.| ++..+++... .+.|..+|...++... +..+......++|++++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDS-----KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDE 193 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECT-----TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTS
T ss_pred CCCEEEEEEccCccCCcccceEECC-----CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCC
Confidence 8775431111 12334567777665 3345554443 2455666655444332 22233346788999987
Q ss_pred e-EEE-EeCCCeEEEEeCC
Q 010816 253 V-IYT-GSQDCTIKVWETT 269 (500)
Q Consensus 253 ~-l~t-~~~dg~i~lwd~~ 269 (500)
. ++. .+.++.|.+||..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~ 212 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALE 212 (333)
T ss_dssp SEEEEEEGGGTEEEEEEEC
T ss_pred CEEEEEeCCCCeEEEEEec
Confidence 3 544 4567899999875
No 190
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=2.3e-12 Score=118.79 Aligned_cols=242 Identities=12% Similarity=0.052 Sum_probs=155.7
Q ss_pred CCcccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCc
Q 010816 106 GHTEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKP 184 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~ 184 (500)
.+.....+++|+|+++ +++++..++.|..||..++ ...+..+...+.+++++++|+++++...++.|.+||..+++.
T Consensus 25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEW 102 (296)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCE
T ss_pred cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcE
Confidence 3455677899999998 7788888999999999887 455566778899999999999888877788999999877653
Q ss_pred ccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEE-----e-
Q 010816 185 SGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTG-----S- 258 (500)
Q Consensus 185 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~-----~- 258 (500)
... ...... .....+..++++++|.++.+ +
T Consensus 103 ~~~-~~~~~~-------------------------------------------~~~~~~~~i~~d~~G~l~vtd~~~g~~ 138 (296)
T 3e5z_A 103 ESI-ADSFEG-------------------------------------------KKLNSPNDVCLAPDGSLWFSDPTYGID 138 (296)
T ss_dssp EEE-ECEETT-------------------------------------------EECCCCCCEEECTTSCEEEEECSHHHH
T ss_pred EEE-eeccCC-------------------------------------------CCCCCCCCEEECCCCCEEEECCccccc
Confidence 210 000000 00011233455666654442 1
Q ss_pred ------------CCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 259 ------------QDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 259 ------------~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
..+.|..++.. ++. ..+..+......++++++
T Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~s~d---------------------------------- 182 (296)
T 3e5z_A 139 KPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAFLPS---------------------------------- 182 (296)
T ss_dssp CGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEECTT----------------------------------
T ss_pred cccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEECCC----------------------------------
Confidence 12355555544 333 333334444566666654
Q ss_pred CCCcEEEEeeCCCeEEEEcCCCCCCC---ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcc
Q 010816 327 NAPERLVSGSDDFTMFLWEPAVSKQP---KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVG 403 (500)
Q Consensus 327 ~~~~~~~s~s~d~~v~~wd~~~~~~~---~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~ 403 (500)
+..+++.+.++.|++|++...... ...+..+...+..++++++|++.++. ++.|.+||.. ++.+..+..+..
T Consensus 183 --g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~ 257 (296)
T 3e5z_A 183 --GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT 257 (296)
T ss_dssp --SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC
T ss_pred --CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC
Confidence 234567777889999997522221 11122234456789999999977766 8899999986 777777766554
Q ss_pred cEEEEEeeeeeeecCCCCceeeeeccccceeeEE-cCCCCEEEEEECCCcEEEEECCCccc
Q 010816 404 PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSW-SADSRLLLSGSKDSTLKVWDIRTQKL 463 (500)
Q Consensus 404 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~s~s~d~~v~iwd~~~~~~ 463 (500)
+.++ +| +|+++.|++++.++ +..++.++.++
T Consensus 258 -~~~~---------------------------~f~~~d~~~L~v~t~~~-l~~~~~~~~~~ 289 (296)
T 3e5z_A 258 -TSNL---------------------------CFGGPEGRTLYMTVSTE-FWSIETNVRGL 289 (296)
T ss_dssp -CCEE---------------------------EEESTTSCEEEEEETTE-EEEEECSCCBC
T ss_pred -ceeE---------------------------EEECCCCCEEEEEcCCe-EEEEEcccccc
Confidence 4444 45 58999999888774 44455555444
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.4e-12 Score=118.44 Aligned_cols=213 Identities=9% Similarity=0.077 Sum_probs=154.5
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCcc-ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCC-ceEEE
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHT-LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHG-HWVNS 286 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~-~~v~~ 286 (500)
+.+.+++++.|+.|++||..+++.+..+..+. ..+.++.+.++|.++. +.++.|..||. +|+.+..+..+. ..+.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~ 81 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRELWNIAAPAGCEMQT 81 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEEEEEECCTTCEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEEEEEcCCCCccccc
Confidence 34678999999999999999999999888765 4678888999987666 56888999998 899988887642 34555
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC-CCeEEEEcCCCCCCCce-ee----eccc
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD-DFTMFLWEPAVSKQPKT-RM----TGHQ 360 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~-~~----~~h~ 360 (500)
+.+.++ +..+++.+. ++.+..+|.. .+.... .+ .++.
T Consensus 82 ~~~~~d------------------------------------G~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~~~~~~~~ 124 (276)
T 3no2_A 82 ARILPD------------------------------------GNALVAWCGHPSTILEVNMK-GEVLSKTEFETGIERPH 124 (276)
T ss_dssp EEECTT------------------------------------SCEEEEEESTTEEEEEECTT-SCEEEEEEECCSCSSGG
T ss_pred cEECCC------------------------------------CCEEEEecCCCCEEEEEeCC-CCEEEEEeccCCCCccc
Confidence 554443 345666665 6677777642 221111 11 1222
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
.....+++.++|+++++...++.|..||.. |+.+..+.....+ +.+ ...++
T Consensus 125 ~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~-~~~---------------------------~~~~~ 175 (276)
T 3no2_A 125 AQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTP-FSS---------------------------AFLDN 175 (276)
T ss_dssp GSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCC-CEE---------------------------EECTT
T ss_pred ccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCc-cce---------------------------eEcCC
Confidence 234556789999999999999999999998 9988777654222 111 34689
Q ss_pred CCEEEEEECCCcEEEEECCCccccccccCcc------cCEEEEEEcCCCCEEEEE
Q 010816 441 SRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA------DEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~------~~V~~l~~s~dg~~l~s~ 489 (500)
|.++++++.++.|..+|..+++.+.++..+. ..+..+...++|..+++.
T Consensus 176 g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 176 GDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp SCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred CCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 9999999988899999999888876654321 236788888999888877
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=1.4e-10 Score=106.79 Aligned_cols=241 Identities=10% Similarity=0.029 Sum_probs=158.2
Q ss_pred CcccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCcee-EEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcc
Q 010816 107 HTEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPM-FKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 107 h~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~-~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~ 185 (500)
....+.+++++++|++.++...++.|.+||.. ++.. ..+..+...+.++++.++|.+.++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 34578899999999988887788999999987 4332 2233344678999999999888877778899999987 5543
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEE-EecCccccEEEEEeCCCCeEEEEeC-CCeE
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVI-CLSGHTLAVTCVKWGGDGVIYTGSQ-DCTI 263 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~-~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i 263 (500)
..........+.++.+.+ ++..+++...++.|..+|.. ++... .+......+.++.+.+++.++.+.. ++.|
T Consensus 96 ~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i 169 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGL-----NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSI 169 (300)
T ss_dssp EEECSSTTCCEEEEEECS-----TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEE
T ss_pred EecCCCCCCCCccceECC-----CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeE
Confidence 222222234456666543 34566666667889999987 54432 2333445678899988887766654 6789
Q ss_pred EEEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEE
Q 010816 264 KVWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMF 342 (500)
Q Consensus 264 ~lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~ 342 (500)
..||. +++..... .........+++.++ +...++....+.|.
T Consensus 170 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~------------------------------------g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 170 GRITN-TGKLEEYPLPTNAAAPVGITSGND------------------------------------GALWFVEIMGNKIG 212 (300)
T ss_dssp EEECT-TCCEEEEECSSTTCCEEEEEECTT------------------------------------SSEEEEETTTTEEE
T ss_pred EEECC-CCcEEEeeCCCCCCCcceEEECCC------------------------------------CCEEEEccCCCEEE
Confidence 99998 55544321 122233445544432 23445555567788
Q ss_pred EEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816 343 LWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 343 ~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
.++.. ..........+...+.+++++++|++.++...++.|..||. +++.
T Consensus 213 ~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 262 (300)
T 2qc5_A 213 RITTT-GEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTI 262 (300)
T ss_dssp EECTT-CCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCE
T ss_pred EEcCC-CcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcE
Confidence 88862 22111112234566899999999997777767789999998 4543
No 193
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.52 E-value=6.5e-12 Score=113.92 Aligned_cols=226 Identities=8% Similarity=0.004 Sum_probs=145.2
Q ss_pred CCceEE-EEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee-cCCceEEE
Q 010816 209 PCRRFV-SASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK-GHGHWVNS 286 (500)
Q Consensus 209 ~~~~~~-s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~-~~~~~v~~ 286 (500)
++..++ +.+.++.|.+||............+...+.++++++++.++.+..++.|.+||...+.. ..+. ........
T Consensus 34 ~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~~ 112 (270)
T 1rwi_B 34 AGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVLPFDGLNYPEG 112 (270)
T ss_dssp TCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EECCCCSCSSEEE
T ss_pred CCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eeeecCCcCCCcc
Confidence 344566 44678899999876554332222333456788899888777776688999999765443 2222 12233455
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l 366 (500)
+++.++ +..+++...++.|..|+...... ..........+.++
T Consensus 113 i~~~~~------------------------------------g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i 155 (270)
T 1rwi_B 113 LAVDTQ------------------------------------GAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGV 155 (270)
T ss_dssp EEECTT------------------------------------CCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCE
T ss_pred eEECCC------------------------------------CCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeE
Confidence 555442 23456666678899997543221 11112223457789
Q ss_pred EECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE
Q 010816 367 YFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS 446 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s 446 (500)
+++|+|+++++...++.|.+||...+........+...... ++++++|.++++
T Consensus 156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~---------------------------i~~d~~g~l~v~ 208 (270)
T 1rwi_B 156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG---------------------------IAVDEAGTVYVT 208 (270)
T ss_dssp EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE---------------------------EEECTTCCEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceE---------------------------EEECCCCCEEEE
Confidence 99999998888777889999998776543221111122222 356889988887
Q ss_pred EECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 447 GSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 447 ~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
...++.|.+||............+...+.+++++++|+.+++...+++|++++
T Consensus 209 ~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 209 EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 77889999999876554333223445789999999999888889999999986
No 194
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=6.7e-12 Score=113.94 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=128.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceE
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT 197 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~ 197 (500)
.++.|++++.|+.|.+||.++++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +|+.+.....+....+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 45789999999999999999999998887765 4788999999999888 45788999999 77754432222223444
Q ss_pred EEEeeeeecCCCCceEEEEeC-CCcEEEEECCCCeEEEEec------CccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC
Q 010816 198 GISWEPVHLNAPCRRFVSASK-DGDARIWDVSLRKCVICLS------GHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT 269 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~-dg~v~iwd~~~~~~~~~~~------~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~ 269 (500)
++.+. .+++.+++.+. ++.+..+|. .++.+..+. ++......+...+++ ++++...++.|..||..
T Consensus 81 ~~~~~-----~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~ 154 (276)
T 3no2_A 81 TARIL-----PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN 154 (276)
T ss_dssp EEEEC-----TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred ccEEC-----CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence 54443 35567777666 666666664 555544432 111222233344444 45555566777777765
Q ss_pred CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCC
Q 010816 270 QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVS 349 (500)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~ 349 (500)
|+.+..+...
T Consensus 155 -G~~~w~~~~~--------------------------------------------------------------------- 164 (276)
T 3no2_A 155 -GQLLNSVKLS--------------------------------------------------------------------- 164 (276)
T ss_dssp -SCEEEEEECS---------------------------------------------------------------------
T ss_pred -CCEEEEEECC---------------------------------------------------------------------
Confidence 5554433210
Q ss_pred CCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 350 KQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 350 ~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
..+.++.+.++|+++++++.++.|..+|..+|+.+..+..
T Consensus 165 -----------~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 165 -----------GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp -----------SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred -----------CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 1223456778999999998888999999999999877764
No 195
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.51 E-value=7.7e-12 Score=113.41 Aligned_cols=240 Identities=8% Similarity=-0.052 Sum_probs=155.8
Q ss_pred cEEEEEEcCCCCeEE-EEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 110 AVLSVAFSPDGRQLA-SGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 110 ~V~~~~~sp~~~~la-t~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
...+++++++|++.+ +...++.|.+||..+.........+...+.+++++++|+++++.. ++.|.+||...+.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~- 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVL- 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEEC-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeee-
Confidence 567899999999777 446788999999766543222123335678899999998666665 88999999876543211
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe-CCCeEEEEe
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS-QDCTIKVWE 267 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~-~dg~i~lwd 267 (500)
.........++.+.+ ++..+++...++.|.+|+..+...............++++++++.++.+. .++.|.+||
T Consensus 103 ~~~~~~~p~~i~~~~-----~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDT-----QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp CCCSCSSEEEEEECT-----TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ecCCcCCCcceEECC-----CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 112224456676654 34566776778899999876554433222333356778888887666554 568999999
Q ss_pred CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
...+...............++++++ +..+++...++.|..|+..
T Consensus 178 ~~~~~~~~~~~~~~~~p~~i~~d~~------------------------------------g~l~v~~~~~~~v~~~~~~ 221 (270)
T 1rwi_B 178 AESNNQVVLPFTDITAPWGIAVDEA------------------------------------GTVYVTEHNTNQVVKLLAG 221 (270)
T ss_dssp TTTCCEEECCCSSCCSEEEEEECTT------------------------------------CCEEEEETTTSCEEEECTT
T ss_pred cCCCceEeecccCCCCceEEEECCC------------------------------------CCEEEEECCCCcEEEEcCC
Confidence 8765543322222234455555443 2345666678899999975
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
.... ......+...+.+++++|+|+++++...++.|++++....+
T Consensus 222 ~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 222 STTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CSCC-EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred CCcc-eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence 4322 11122333568999999999988998999999999986543
No 196
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.51 E-value=2.6e-10 Score=104.91 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=172.1
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC
Q 010816 149 HKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS 228 (500)
Q Consensus 149 h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~ 228 (500)
....+.++.+.++|.+.++...++.|..||.. ++.....+......+.++.+.+ ++..+++...++.|..+|..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-----~g~l~v~~~~~~~v~~~d~~ 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSS-----LGDIWFTENGANKIGKLSKK 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-----TSCEEEEETTTTEEEEECTT
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECC-----CCCEEEEecCCCeEEEECCC
Confidence 44578899999999988887778999999987 5533222222334556666543 34456665667889999987
Q ss_pred CCeEE-EEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCCeeEEE-eecCCceEEEEEecCcceeeeccccCCCC
Q 010816 229 LRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 229 ~~~~~-~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
++.. ..+......+.++++.+++.++.+.. ++.|..||.. ++.... +.........+++.++
T Consensus 92 -g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~------------- 156 (300)
T 2qc5_A 92 -GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSD------------- 156 (300)
T ss_dssp -SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTT-------------
T ss_pred -CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCC-------------
Confidence 5443 22333345678899988887666554 7889999986 554422 2222334455554432
Q ss_pred CCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEE
Q 010816 306 QYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIK 385 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~ 385 (500)
+...++...++.|..+|. ...........+...+..++++++|.+.++....+.|.
T Consensus 157 -----------------------g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 157 -----------------------NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIG 212 (300)
T ss_dssp -----------------------SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred -----------------------CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEE
Confidence 234455555778888886 22211111223345688999999998887777778899
Q ss_pred EEeCCCCceEEE-EeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccc
Q 010816 386 LWNGTTGKFVAV-FRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLK 464 (500)
Q Consensus 386 lwd~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~ 464 (500)
+||. +++.... +..+...... +++.++|++.++...++.|..||.. ++..
T Consensus 213 ~~~~-~g~~~~~~~~~~~~~~~~---------------------------i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~ 263 (300)
T 2qc5_A 213 RITT-TGEISEYDIPTPNARPHA---------------------------ITAGKNSEIWFTEWGANQIGRITND-NTIQ 263 (300)
T ss_dssp EECT-TCCEEEEECSSTTCCEEE---------------------------EEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred EEcC-CCcEEEEECCCCCCCceE---------------------------EEECCCCCEEEeccCCCeEEEECCC-CcEE
Confidence 9998 5554322 1112222222 3567889877776677899999984 4332
Q ss_pred -ccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 465 -QDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 465 -~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
..+......+.++.++++|+..++.. . .|..+
T Consensus 264 ~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 264 EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL 296 (300)
T ss_dssp EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence 22333445678899999998666554 4 44443
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=2.5e-12 Score=134.16 Aligned_cols=272 Identities=14% Similarity=0.049 Sum_probs=161.3
Q ss_pred CCCCeEEEEeCCCc---EEEEeC--C---CCceeEE------ecCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEe
Q 010816 118 PDGRQLASGSGDTT---VRLWDL--N---TQTPMFK------CTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWD 178 (500)
Q Consensus 118 p~~~~lat~~~d~~---i~iwd~--~---~~~~~~~------~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~~wd 178 (500)
|+|++++....++. -.||.. . ++..... ..+|...+..++|||||++||.++.+ ..|++||
T Consensus 116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d 195 (741)
T 1yr2_A 116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG 195 (741)
T ss_dssp EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence 89998887654432 556654 3 3332221 12344468899999999999876654 4699999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCc--------------EEEEECCCCe----EEEEecCcc
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGD--------------ARIWDVSLRK----CVICLSGHT 240 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~--------------v~iwd~~~~~----~~~~~~~h~ 240 (500)
+.+|+..... .+...+.++.|+| + +.|+.++.++. |++|++.++. .+.....+.
T Consensus 196 l~tg~~~~~~--~~~~~~~~~~wsp-----D-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~ 267 (741)
T 1yr2_A 196 VADGKPLADE--LKWVKFSGLAWLG-----N-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELP 267 (741)
T ss_dssp TTTCCEEEEE--EEEEESCCCEEST-----T-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCT
T ss_pred CCCCCCCCcc--CCCceeccEEEEC-----C-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCC
Confidence 9998754321 1112224667765 4 56777766554 8999997764 333333444
Q ss_pred ccEEEEEeCCCC-eEEEEeCC-----CeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 241 LAVTCVKWGGDG-VIYTGSQD-----CTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 241 ~~v~~~~~~~~~-~l~t~~~d-----g~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
..+..+.|++|| .|+..+.+ ..|.+||+.++ +....+..+...+.... .++
T Consensus 268 ~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d-------------------- 326 (741)
T 1yr2_A 268 KRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV-------------------- 326 (741)
T ss_dssp TCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE--------------------
T ss_pred eEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc--------------------
Confidence 458889999998 45555433 48999998776 31334433332222221 111
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEeeC----CCeEEEEcCCCCC-CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEE
Q 010816 313 MKKAALERYNKIKGNAPERLVSGSD----DFTMFLWEPAVSK-QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLW 387 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s~----d~~v~~wd~~~~~-~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lw 387 (500)
+..++..+. ++.|.+||+.... .....+..+...+..++++ ++.++++...|+..+||
T Consensus 327 ----------------g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 327 ----------------GDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp ----------------TTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred ----------------CCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 234444443 4568899875431 2233344455567778887 66788888999987777
Q ss_pred eCC-CCceEEEEeCC-cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEE-EE---CCCcEEEEECCCc
Q 010816 388 NGT-TGKFVAVFRGH-VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLS-GS---KDSTLKVWDIRTQ 461 (500)
Q Consensus 388 d~~-~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s-~s---~d~~v~iwd~~~~ 461 (500)
... +++....+..+ .+.+.. ++++|+++.|+. .+ ..++|++||+.++
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~---------------------------~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASG---------------------------LSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEE---------------------------EECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEeCCCCceeeccCCCCeEEEE---------------------------eecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 543 35444444332 233322 256788875553 22 3478999999876
Q ss_pred c
Q 010816 462 K 462 (500)
Q Consensus 462 ~ 462 (500)
+
T Consensus 443 ~ 443 (741)
T 1yr2_A 443 K 443 (741)
T ss_dssp E
T ss_pred c
Confidence 5
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=3.6e-11 Score=112.41 Aligned_cols=244 Identities=13% Similarity=0.077 Sum_probs=161.7
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
.....+.+. ++++.++...++.|.+||..+++.+..+. .......++++++++..++...++.|.+||+.+++.....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYI 121 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEE
Confidence 345667773 35555666678999999999998877775 3456889999999854455448999999999987654321
Q ss_pred ccCc----ccceEEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCC---
Q 010816 189 LSGH----KKWITGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQD--- 260 (500)
Q Consensus 189 ~~~~----~~~v~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~d--- 260 (500)
..+. .....++.+. ....+++.. .++.|.++|..+++.+..+.... ....+.+++++.++.++..
T Consensus 122 ~~g~~~~~~~~p~~i~~~------~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~ 194 (328)
T 3dsm_A 122 ECPDMDMESGSTEQMVQY------GKYVYVNCWSYQNRILKIDTETDKVVDELTIGI-QPTSLVMDKYNKMWTITDGGYE 194 (328)
T ss_dssp ECTTCCTTTCBCCCEEEE------TTEEEEEECTTCCEEEEEETTTTEEEEEEECSS-CBCCCEECTTSEEEEEBCCBCT
T ss_pred EcCCccccCCCcceEEEE------CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCC-CccceEEcCCCCEEEEECCCcc
Confidence 1111 0123344431 223444443 48899999999998777665332 2346778888877666543
Q ss_pred --------CeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE
Q 010816 261 --------CTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER 331 (500)
Q Consensus 261 --------g~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (500)
+.|.++|..+++....+... ......++++++ ...
T Consensus 195 ~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d------------------------------------~~~ 238 (328)
T 3dsm_A 195 GSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGT------------------------------------RDT 238 (328)
T ss_dssp TCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTT------------------------------------SCE
T ss_pred CCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecC------------------------------------CCE
Confidence 68999999998877666432 234566777654 234
Q ss_pred EEEeeCCCeEEEEcCCCCCCCcee-eecccCcEEEEEECC-CCCEEEEE----eCCCcEEEEeCCCCceEEEEeC
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPKTR-MTGHQQLVNHVYFSP-DGQWVASA----SFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~~~-~~~h~~~v~~l~~sp-~g~~lasg----s~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
+..+.. .|.+||.......... ...+......++++| ++.+.++. ..++.|.+||.. |+.+..++.
T Consensus 239 lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp EEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEE
T ss_pred EEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEe
Confidence 444433 8889997654432111 222245688999999 56666666 678999999998 888877653
No 199
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=8.6e-11 Score=117.25 Aligned_cols=273 Identities=11% Similarity=0.074 Sum_probs=174.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC--CCeEEEEec
Q 010816 160 ADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS--LRKCVICLS 237 (500)
Q Consensus 160 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~--~~~~~~~~~ 237 (500)
+.+.++++...++.|.++|..+++.......+ .....+.++| +++++++++.|+.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~Sp-----DGr~lyv~~~dg~V~viD~~~~t~~~v~~i~ 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSA-----SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECT-----TSCEEEEEETTSEEEEEETTSSSCCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECC-----CCCEEEEEcCCCeEEEEECCCCCCcEeEEEe
Confidence 34456677888999999999998765432222 1234566554 66788888999999999995 777776665
Q ss_pred CccccEEEEEeC----CCC-eEEE-EeCCCeEEEEeCCCCeeEEEeecCC-----------ceEEEEEecCcceeeeccc
Q 010816 238 GHTLAVTCVKWG----GDG-VIYT-GSQDCTIKVWETTQGKLIRELKGHG-----------HWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 238 ~h~~~v~~~~~~----~~~-~l~t-~~~dg~i~lwd~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~~~~~~ 300 (500)
.... -..++|+ +|| ++++ ...+++|.++|..+.+.++.+.... ..+..+..+++
T Consensus 238 ~G~~-P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~-------- 308 (567)
T 1qks_A 238 IGSE-ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY-------- 308 (567)
T ss_dssp CCSE-EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS--------
T ss_pred cCCC-CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC--------
Confidence 4333 4578898 577 4444 5567999999999988887664221 12333333321
Q ss_pred cCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEe-
Q 010816 301 DHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASAS- 379 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs- 379 (500)
.+..++.-..+|.|.++|....................+.|+|+|++|+++.
T Consensus 309 ---------------------------~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~ 361 (567)
T 1qks_A 309 ---------------------------RPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN 361 (567)
T ss_dssp ---------------------------SSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred ---------------------------CCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC
Confidence 1334566677889999986543222111222334567889999999887665
Q ss_pred CCCcEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEE
Q 010816 380 FDKSIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVW 456 (500)
Q Consensus 380 ~Dg~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iw 456 (500)
.++.|.++|..+++++..+.. -..+- + .... ..++|++. +.+++. .++.|.++
T Consensus 362 ~sn~V~ViD~~t~kl~~~i~vgg~~Ph-------------p----------g~g~-~~~~p~~g~v~~t~~~g~~~Vsvi 417 (567)
T 1qks_A 362 ARNKLVVIDTKEGKLVAIEDTGGQTPH-------------P----------GRGA-NFVHPTFGPVWATSHMGDDSVALI 417 (567)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSSBC-------------C----------TTCE-EEEETTTEEEEEEEBSSSSEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEeccCcCCC-------------C----------ccce-eeECCCCCcEEEeCCCCCCeEEEe
Confidence 578999999999987765542 11110 0 0000 01367744 444443 46899999
Q ss_pred ECCC-------ccccccccCcccCEEEEEEcCCCCEEEEEeC-------CCcEEEec
Q 010816 457 DIRT-------QKLKQDLPGHADEVFAVDWSPDGEKVASGGK-------DRVLKLWM 499 (500)
Q Consensus 457 d~~~-------~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~-------D~~v~iW~ 499 (500)
|..+ .+.++.+......-..+..+|++++|..... ...|.+++
T Consensus 418 d~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 418 GTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp ECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred cCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence 9987 4555665544333345778999999887653 34677665
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.47 E-value=1.1e-09 Score=103.89 Aligned_cols=274 Identities=12% Similarity=-0.001 Sum_probs=168.4
Q ss_pred EcCCCCeEEEEeC--CC---cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCC
Q 010816 116 FSPDGRQLASGSG--DT---TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQ 180 (500)
Q Consensus 116 ~sp~~~~lat~~~--d~---~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~ 180 (500)
..|+++++..... .. +|.++|..+++.+..+.....+ .+.++|||++|+.+. .++.|.+||..
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~ 105 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV 105 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence 4477777776653 22 8899999998877666543344 899999999998875 36789999998
Q ss_pred CCCcccccccC-c-----ccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEE-ecCccccEEEEEeCCC
Q 010816 181 TGKPSGNPLSG-H-----KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVIC-LSGHTLAVTCVKWGGD 251 (500)
Q Consensus 181 ~~~~~~~~~~~-~-----~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~-~~~h~~~v~~~~~~~~ 251 (500)
+.+.......+ . ...-..+.|+| ++++++.+.. +..|.++| .+++.+.. +.-. . |+.+.++
T Consensus 106 t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-----DG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~ 175 (373)
T 2mad_H 106 TFLPIADIELPDAPRFDVGPYSWMNANTP-----NNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPG 175 (373)
T ss_pred CCcEEEEEECCCccccccCCCccceEECC-----CCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeC
Confidence 76654322111 0 01122455554 5667776653 57899999 99887766 4321 1 1222222
Q ss_pred --CeEEEEeCCCeEEEEeCCCCeeEEEeec-----CCceEE-EEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhh
Q 010816 252 --GVIYTGSQDCTIKVWETTQGKLIRELKG-----HGHWVN-SLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNK 323 (500)
Q Consensus 252 --~~l~t~~~dg~i~lwd~~~~~~~~~~~~-----~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (500)
..+++.+.||.+.++|. +++....... ...++. ...+.+
T Consensus 176 ~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~-------------------------------- 222 (373)
T 2mad_H 176 APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN-------------------------------- 222 (373)
T ss_pred CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe--------------------------------
Confidence 35667788999999999 8776533210 000000 000000
Q ss_pred hcCCCCcEEEEeeCCCeEEEEcCCCCCCCc-eeee----------cccCcEEEEEECCCCCEEEEEeC----------CC
Q 010816 324 IKGNAPERLVSGSDDFTMFLWEPAVSKQPK-TRMT----------GHQQLVNHVYFSPDGQWVASASF----------DK 382 (500)
Q Consensus 324 ~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~-~~~~----------~h~~~v~~l~~sp~g~~lasgs~----------Dg 382 (500)
....++..+..+.+.+.|........ ..+. -.......++++|+++.+..+.. ++
T Consensus 223 ----~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~ 298 (373)
T 2mad_H 223 ----KSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK 298 (373)
T ss_pred ----cCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence 01122223356678887764321110 0110 01122344789999887776543 35
Q ss_pred cEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCC
Q 010816 383 SIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRT 460 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~ 460 (500)
.|.++|..+++.+..+..-.. ... ++|+|||+ +++++. .++.|.+||+.+
T Consensus 299 ~V~VID~~t~~vv~~i~~g~~-p~~---------------------------i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 299 EVTSVTGLVGQTSSQISLGHD-VDA---------------------------ISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred eEEEEECCCCEEEEEEECCCC-cCe---------------------------EEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 799999999998877653221 222 26799999 788877 589999999999
Q ss_pred cccccc
Q 010816 461 QKLKQD 466 (500)
Q Consensus 461 ~~~~~~ 466 (500)
++.+..
T Consensus 351 ~~vv~~ 356 (373)
T 2mad_H 351 GDQDQS 356 (373)
T ss_pred CCEEee
Confidence 988776
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.45 E-value=4.9e-12 Score=131.99 Aligned_cols=245 Identities=16% Similarity=0.059 Sum_probs=151.5
Q ss_pred CCcccEEEEEEcCCCCeEEEEeCC-----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCe-------
Q 010816 106 GHTEAVLSVAFSPDGRQLASGSGD-----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGE------- 173 (500)
Q Consensus 106 gh~~~V~~~~~sp~~~~lat~~~d-----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~------- 173 (500)
+|...+..++|||||++||.++.+ ..|++||+.+++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~ 237 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQ 237 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC-------
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccc
Confidence 455578899999999999987643 4699999999876542 112222357899999 99988877654
Q ss_pred -------EEEEeCCCCCcccccc---cCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCC--eEEEEe
Q 010816 174 -------LQCWDPQTGKPSGNPL---SGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLR--KCVICL 236 (500)
Q Consensus 174 -------i~~wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~--~~~~~~ 236 (500)
|.+|++.++......+ ..+...+.++.|+| +++.++..+.+ ..|++||+.++ ++...+
T Consensus 238 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-----DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 238 ALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS-----DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp -CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-----TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC-----CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 8899987765321111 22333567777765 55666666544 38999999776 313444
Q ss_pred cCccccEEEEEeCCCCeEEEEeC----CCeEEEEeCCCC--eeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 237 SGHTLAVTCVKWGGDGVIYTGSQ----DCTIKVWETTQG--KLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 237 ~~h~~~v~~~~~~~~~~l~t~~~----dg~i~lwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
..+...+....+..++.|+..+. ++.|.+||+.++ .....+..+...+..+.+..
T Consensus 313 ~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~------------------- 373 (741)
T 1yr2_A 313 IPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG------------------- 373 (741)
T ss_dssp ECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-------------------
T ss_pred cCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-------------------
Confidence 44443333333333345665554 345999998774 33333333433444444331
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec-ccCcEEEEEECCCCCEEEEE----eCCCcEE
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-HQQLVNHVYFSPDGQWVASA----SFDKSIK 385 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-h~~~v~~l~~sp~g~~lasg----s~Dg~i~ 385 (500)
...+++...|+..++|...........+.. +...+..++++|+++.|+.. ...++|+
T Consensus 374 ------------------~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~ 435 (741)
T 1yr2_A 374 ------------------NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVL 435 (741)
T ss_dssp ------------------TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEE
T ss_pred ------------------CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence 235677888888777754322222233332 35678899999998766522 2347899
Q ss_pred EEeCCCCce
Q 010816 386 LWNGTTGKF 394 (500)
Q Consensus 386 lwd~~~~~~ 394 (500)
+||+.+++.
T Consensus 436 ~~d~~tg~~ 444 (741)
T 1yr2_A 436 ALDPATAKT 444 (741)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCcE
Confidence 999988863
No 202
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.45 E-value=1.1e-10 Score=109.43 Aligned_cols=296 Identities=15% Similarity=0.059 Sum_probs=180.2
Q ss_pred EEcCCCCeEEEEeC-----CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeC
Q 010816 115 AFSPDGRQLASGSG-----DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDP 179 (500)
Q Consensus 115 ~~sp~~~~lat~~~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~ 179 (500)
...|+++++..... ++.|.+.|..+.+.+..+..-..+ . +.++|||++|+.+. .++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 44689988888765 689999999999888777654455 4 99999999887765 3678999999
Q ss_pred CCCCcccccccCc------ccceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEEecCccccEEEEEeC-C
Q 010816 180 QTGKPSGNPLSGH------KKWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWG-G 250 (500)
Q Consensus 180 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~ 250 (500)
.+++.......+. ...-..+.++ .+++++..+.. ++.|.++|+.+++.+..+.-.. + ...+. .
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~s-----pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g 188 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLT-----PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTA 188 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEEC-----TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEc-----CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCC
Confidence 9887544321110 0011233443 46666666653 6899999999999887764211 1 11121 1
Q ss_pred CCeEEEEeCCCeEEEEeCCC-CeeEEEeecCCceEEEEEecCcc-ee-eeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 251 DGVIYTGSQDCTIKVWETTQ-GKLIRELKGHGHWVNSLALSTEY-AL-RTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 251 ~~~l~t~~~dg~i~lwd~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
...+++.+.||++.+.++.+ ++........ +.++. .+ ....+ . .
T Consensus 189 ~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~--------~~~~~~~~~~~~~~------------------------~-~ 235 (386)
T 3sjl_D 189 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV--------FHPEDEFLINHPAY------------------------S-Q 235 (386)
T ss_dssp TTEEEEEETTSCEEEEECCSSSCCEEEECCC--------CSCTTSCBCSCCEE------------------------E-T
T ss_pred CceeEEECCCCCEEEEECCCCCeEEEeecce--------ecccccccccccee------------------------E-c
Confidence 23577888999999999876 5543211100 00000 00 00000 0 0
Q ss_pred CCcEEEEeeCCCeEEEEcCCCCCC-Cceeee---------c-ccCcEEEEEECCCCCEEEEEeC----------CCcEEE
Q 010816 328 APERLVSGSDDFTMFLWEPAVSKQ-PKTRMT---------G-HQQLVNHVYFSPDGQWVASASF----------DKSIKL 386 (500)
Q Consensus 328 ~~~~~~s~s~d~~v~~wd~~~~~~-~~~~~~---------~-h~~~v~~l~~sp~g~~lasgs~----------Dg~i~l 386 (500)
...+++..+.++++++.|...... ...... + .......++++|+++.+..... .+.|.+
T Consensus 236 ~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~v 315 (386)
T 3sjl_D 236 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV 315 (386)
T ss_dssp TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred CCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEE
Confidence 122444466689999999754321 111110 0 0112224777999887776543 257999
Q ss_pred EeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCcccc
Q 010816 387 WNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLK 464 (500)
Q Consensus 387 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~ 464 (500)
.|..+++.+..+..-. ..+.+ ++++|++ +|+++. .++.|.++|..+++.+
T Consensus 316 iD~~t~kv~~~i~vg~-~~~~l---------------------------avs~D~~~~ly~tn~~~~~VsViD~~t~k~~ 367 (386)
T 3sjl_D 316 LDAKTGERLAKFEMGH-EIDSI---------------------------NVSQDEKPLLYALSTGDKTLYIHDAESGEEL 367 (386)
T ss_dssp EETTTCCEEEEEEEEE-EECEE---------------------------EECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred EECCCCeEEEEEECCC-CcceE---------------------------EECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence 9999999887664211 22222 6799997 676655 4899999999999988
Q ss_pred ccccCcccCEEEEEEcCC
Q 010816 465 QDLPGHADEVFAVDWSPD 482 (500)
Q Consensus 465 ~~~~~h~~~V~~l~~s~d 482 (500)
++++.-. .-..+.+++|
T Consensus 368 ~~i~~~~-~p~~l~~s~d 384 (386)
T 3sjl_D 368 RSVNQLG-HGPQVITTAD 384 (386)
T ss_dssp EEECCCC-SSCCEEEECC
T ss_pred EEecCCC-CCceeEECCc
Confidence 7664321 1233445554
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.43 E-value=1.4e-10 Score=107.63 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=148.0
Q ss_pred eEEEEeeeeecCCCCceEEE-------EeCCCcEEEEECCCCeEEEEec----CccccEEEEEeCCC-CeEEEEeCCCeE
Q 010816 196 ITGISWEPVHLNAPCRRFVS-------ASKDGDARIWDVSLRKCVICLS----GHTLAVTCVKWGGD-GVIYTGSQDCTI 263 (500)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~s-------~s~dg~v~iwd~~~~~~~~~~~----~h~~~v~~~~~~~~-~~l~t~~~dg~i 263 (500)
..++.|.+ ++..+++ +..++.|.+||..+++...... ++...+.++.++++ +.++.++.++.|
T Consensus 20 ~~~~~~~~-----~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l 94 (314)
T 1pjx_A 20 AEGPVFDK-----NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGL 94 (314)
T ss_dssp CEEEEECT-----TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEE
T ss_pred ccCceECC-----CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCE
Confidence 34566643 3345566 5778899999987776543222 25566889999998 888877776789
Q ss_pred EEEeCCCCeeEEE-eecC----CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCC
Q 010816 264 KVWETTQGKLIRE-LKGH----GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDD 338 (500)
Q Consensus 264 ~lwd~~~~~~~~~-~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d 338 (500)
.+||.. ++.... .... ...+..++++++. ...++...+
T Consensus 95 ~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g------------------------------------~l~v~~~~~ 137 (314)
T 1pjx_A 95 LVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG------------------------------------NLWITAPAG 137 (314)
T ss_dssp EEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS------------------------------------CEEEEECBC
T ss_pred EEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC------------------------------------CEEEEecCc
Confidence 999987 665433 2111 1234455554432 233443333
Q ss_pred ---------------CeEEEEcCCCCCCCceeeecccCcEEEEEEC----CCCCEEE-EEeCCCcEEEEeCC-CCceE--
Q 010816 339 ---------------FTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS----PDGQWVA-SASFDKSIKLWNGT-TGKFV-- 395 (500)
Q Consensus 339 ---------------~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s----p~g~~la-sgs~Dg~i~lwd~~-~~~~~-- 395 (500)
+.|..++.. . . ......+......++++ |+|+.|. +...++.|++||.. +++..
T Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~-g-~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~ 214 (314)
T 1pjx_A 138 EVAPADYTRSMQEKFGSIYCFTTD-G-Q-MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK 214 (314)
T ss_dssp BCTTSCCCBTTSSSCEEEEEECTT-S-C-EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE
T ss_pred ccccccccccccCCCCeEEEECCC-C-C-EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc
Confidence 467777653 1 1 22223334457889999 9997654 44567899999976 44321
Q ss_pred ---EEEeCCc-ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcc
Q 010816 396 ---AVFRGHV-GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHA 471 (500)
Q Consensus 396 ---~~~~~h~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~ 471 (500)
..+.++. .. ...++++++|+++++...++.|.+||..+++....+..+.
T Consensus 215 ~~~~~~~~~~~~~---------------------------p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~ 267 (314)
T 1pjx_A 215 KVWGHIPGTHEGG---------------------------ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF 267 (314)
T ss_dssp EEEEECCCCSSCE---------------------------EEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS
T ss_pred eEEEECCCCCCCC---------------------------CCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC
Confidence 1111111 11 1223678999998888889999999998777766666666
Q ss_pred cCEEEEEEcCCCCEEEE-EeCCCcEEEec
Q 010816 472 DEVFAVDWSPDGEKVAS-GGKDRVLKLWM 499 (500)
Q Consensus 472 ~~V~~l~~s~dg~~l~s-~~~D~~v~iW~ 499 (500)
..+.+++|+|+|++|.. ...++.|..|+
T Consensus 268 ~~~~~i~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 268 EKPSNLHFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence 78999999999996654 45567777765
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=3.5e-10 Score=104.89 Aligned_cols=242 Identities=10% Similarity=0.140 Sum_probs=151.7
Q ss_pred ccEEEEEEcCCCCeEEE-------EeCCCcEEEEeCCCCceeEEec----CCCCCEEEEEEcCC-CCEEEEEeCCCeEEE
Q 010816 109 EAVLSVAFSPDGRQLAS-------GSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSAD-GKHLVSGSKAGELQC 176 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat-------~~~d~~i~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~-~~~l~s~~~d~~i~~ 176 (500)
....+++|+++++++++ +..++.|.+||..+++...... ++...+.++.++++ |+++++. ..+.|.+
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~ 96 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLV 96 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEE
Confidence 34578999999988887 5778899999987766432211 25567899999999 6655544 4457999
Q ss_pred EeCCCCCcccc-cc--cC-cccceEEEEeeeeecCCCCceEEEEeCC---------------CcEEEEECCCCeEEEEec
Q 010816 177 WDPQTGKPSGN-PL--SG-HKKWITGISWEPVHLNAPCRRFVSASKD---------------GDARIWDVSLRKCVICLS 237 (500)
Q Consensus 177 wd~~~~~~~~~-~~--~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~d---------------g~v~iwd~~~~~~~~~~~ 237 (500)
||.. ++.... .. .+ ....+.++.+.+ ++..+++...+ +.|..||.. ++.... .
T Consensus 97 ~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-----~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~-~ 168 (314)
T 1pjx_A 97 VQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-----EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV-D 168 (314)
T ss_dssp EETT-SCEEECCSBCTTSCBCBCCCEEEECT-----TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE-E
T ss_pred EeCC-CCEEEEEeccCCCccccCCcCEEECC-----CCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe-c
Confidence 9987 654221 10 11 112355666654 34455555444 456667655 443322 2
Q ss_pred CccccEEEEEeC----CCC-eEEEE-eCCCeEEEEeCC-CCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCH
Q 010816 238 GHTLAVTCVKWG----GDG-VIYTG-SQDCTIKVWETT-QGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 238 ~h~~~v~~~~~~----~~~-~l~t~-~~dg~i~lwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
.+......++++ +++ .++.+ ..++.|.+||.. +++....
T Consensus 169 ~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~---------------------------------- 214 (314)
T 1pjx_A 169 TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK---------------------------------- 214 (314)
T ss_dssp EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE----------------------------------
T ss_pred cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc----------------------------------
Confidence 223345677888 887 45444 467888888864 2221100
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeeccc-CcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ-QLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~-~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
..+. .+.++. ..+..++++++|+++++...++.|.+||.
T Consensus 215 -------------------------------~~~~---------~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~ 254 (314)
T 1pjx_A 215 -------------------------------KVWG---------HIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP 254 (314)
T ss_dssp -------------------------------EEEE---------ECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred -------------------------------eEEE---------ECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence 0000 001111 33567899999998888888899999999
Q ss_pred CCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE-EEECCCcEEEEECCC
Q 010816 390 TTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL-SGSKDSTLKVWDIRT 460 (500)
Q Consensus 390 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~-s~s~d~~v~iwd~~~ 460 (500)
.+++.+..+..+...+.++ +++|+|+.|+ +...++.|..|++..
T Consensus 255 ~~g~~~~~~~~~~~~~~~i---------------------------~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 255 DGGQPKMRIRCPFEKPSNL---------------------------HFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TCBSCSEEEECSSSCEEEE---------------------------EECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCcEeEEEeCCCCCceeE---------------------------EECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8787766665554444444 5689999555 445668899999865
No 205
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.39 E-value=3.6e-10 Score=107.84 Aligned_cols=305 Identities=9% Similarity=0.025 Sum_probs=184.9
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCC---------CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGH---------KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h---------~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 189 (500)
++..+..++.++.|..+|..+++.+...... ...+.+. ...++..++.++.++.|..+|.++|+......
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 3667888888999999999999887655432 1223221 12245678888999999999999987542211
Q ss_pred cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccE-----EEEEeCCCCeEEEEeCCCeEE
Q 010816 190 SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAV-----TCVKWGGDGVIYTGSQDCTIK 264 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v-----~~~~~~~~~~l~t~~~dg~i~ 264 (500)
. .. .+. -.|.. ....++.++.++.+..+|..+++.+.......... ...... ++.++.++.++.+.
T Consensus 131 ~-~~-~~~---~~p~~---~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~v~~g~~~g~l~ 201 (376)
T 3q7m_A 131 V-AG-EAL---SRPVV---SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGAAVVGGDNGRVS 201 (376)
T ss_dssp C-SS-CCC---SCCEE---ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTEEEECCTTTEEE
T ss_pred C-CC-ceE---cCCEE---ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCEEEEEcCCCEEE
Confidence 1 10 010 01111 12467888899999999999998776654322111 111111 56788899999999
Q ss_pred EEeCCCCeeEEEeecCCce----EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 265 VWETTQGKLIRELKGHGHW----VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 265 lwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
.+|..+|+.+......... +..+. +.... .......++.++.++.
T Consensus 202 ~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~-------------------p~~~~~~v~~~~~~g~ 250 (376)
T 3q7m_A 202 AVLMEQGQMIWQQRISQATGSTEIDRLS------------DVDTT-------------------PVVVNGVVFALAYNGN 250 (376)
T ss_dssp EEETTTCCEEEEEECCC-----------------------CCCCC-------------------CEEETTEEEEECTTSC
T ss_pred EEECCCCcEEEEEecccCCCCccccccc------------ccCCC-------------------cEEECCEEEEEecCcE
Confidence 9999999887665422110 00000 00000 0001246777888899
Q ss_pred EEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816 341 MFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 341 v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
+..+|....+...... ......+.. ++..+..++.++.|..+|..+|+.+-.........
T Consensus 251 l~~~d~~tG~~~w~~~---~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~--------------- 310 (376)
T 3q7m_A 251 LTALDLRSGQIMWKRE---LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL--------------- 310 (376)
T ss_dssp EEEEETTTCCEEEEEC---CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC---------------
T ss_pred EEEEECCCCcEEeecc---CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc---------------
Confidence 9999976544322111 122333333 46678888899999999999998765443111100
Q ss_pred CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEE-EEEcCCCCEEEEEeCCCcEEEec
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFA-VDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
..... ..+..|+.++.+|.++.+|.++++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 311 -----------~~~~~--~~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 311 -----------LTSPV--LYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp -----------CCCCE--EETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred -----------ccCCE--EECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 00001 13567888999999999999999876554432222221 112 246889999999999886
No 206
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.38 E-value=4.1e-11 Score=123.06 Aligned_cols=312 Identities=14% Similarity=0.122 Sum_probs=182.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
+..|+.++.++.|.-+|..+++.+.....+... + ..+.. ++..|+.++.|+.|..+|.++|+..-..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 566777888999999999999988776533210 0 11122 3568889999999999999999865322
Q ss_pred ccC-cccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEecC--cc-------------------
Q 010816 189 LSG-HKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLSG--HT------------------- 240 (500)
Q Consensus 189 ~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~~~--h~------------------- 240 (500)
... +......+...|.-. ...++.++ .++.|+.||..+++.+..+.. +.
T Consensus 148 ~~~~~~~~~~~~~~sP~v~---~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g 224 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVV---NGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFG 224 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEE---TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCS
T ss_pred cCcCCCCCCccccCCcEEE---CCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCC
Confidence 111 111111111122111 23455443 378999999999998766531 00
Q ss_pred ----------ccEEEEEeCC-CCeEEEEeCCCe-------------------EEEEeCCCCeeEEEeecCCceEEEEEec
Q 010816 241 ----------LAVTCVKWGG-DGVIYTGSQDCT-------------------IKVWETTQGKLIRELKGHGHWVNSLALS 290 (500)
Q Consensus 241 ----------~~v~~~~~~~-~~~l~t~~~dg~-------------------i~lwd~~~~~~~~~~~~~~~~v~~~~~~ 290 (500)
.....+.+++ .+.++.++.++. |..+|..+|+.+..++...+........
T Consensus 225 ~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~ 304 (689)
T 1yiq_A 225 DAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTAT 304 (689)
T ss_dssp STHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCC
T ss_pred ceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCC
Confidence 0001345655 467888877763 9999999999887765422111100000
Q ss_pred CcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc--------
Q 010816 291 TEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL-------- 362 (500)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~-------- 362 (500)
....+.... +.+.....++.++.+|.++++|....+...........+
T Consensus 305 ~~~~l~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~ 360 (689)
T 1yiq_A 305 QHMILAELP------------------------IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT 360 (689)
T ss_dssp SCEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred CCcEEEeec------------------------cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence 000000000 000011257788899999999976554321100000000
Q ss_pred ------------------------------EEEEEECCCCCEEEEEeC--------------------------------
Q 010816 363 ------------------------------VNHVYFSPDGQWVASASF-------------------------------- 380 (500)
Q Consensus 363 ------------------------------v~~l~~sp~g~~lasgs~-------------------------------- 380 (500)
-..++|+|+..++.+...
T Consensus 361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p 440 (689)
T 1yiq_A 361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP 440 (689)
T ss_dssp TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence 112788998887776532
Q ss_pred -------------CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816 381 -------------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (500)
Q Consensus 381 -------------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 447 (500)
+|.|+.||+.+|+.+-.++.+.... ...++..+.+++.|
T Consensus 441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~----------------------------~g~~~tagglvf~g 492 (689)
T 1yiq_A 441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN----------------------------GGTLSTAGNLVFEG 492 (689)
T ss_dssp SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC----------------------------CCEEEETTTEEEEE
T ss_pred cccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc----------------------------CccceECCCEEEEE
Confidence 3678888888888765554332110 00235578899999
Q ss_pred ECCCcEEEEECCCccccccccCcccC-EEEEEEcCCCCEEEE
Q 010816 448 SKDSTLKVWDIRTQKLKQDLPGHADE-VFAVDWSPDGEKVAS 488 (500)
Q Consensus 448 s~d~~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~dg~~l~s 488 (500)
+.|+.++.||.++++++.++....+. ..-+.|+.||+..+.
T Consensus 493 t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 493 SADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 99999999999999988665433221 133567778875443
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.36 E-value=1.7e-11 Score=115.32 Aligned_cols=169 Identities=11% Similarity=0.082 Sum_probs=129.3
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCc-----------eeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQT-----------PMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~-----------~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
++..+++++...++++|+.++ +++|++.+.. +.... .+.. |+.|+| |++.|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 688999999999999999985 6669864322 21222 3566 999999 89999998 889999999
Q ss_pred CCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEe
Q 010816 179 PQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGS 258 (500)
Q Consensus 179 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~ 258 (500)
+.+... ......|+..+.++.+.+. .+++++.||.+.+||+..++... +...|+|++|+++| ++.|.
T Consensus 113 v~sl~~-~~~~~~~~~~v~~i~~~~p-------~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG-~~vg~ 179 (388)
T 1xip_A 113 LEELSE-FRTVTSFEKPVFQLKNVNN-------TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ-LAVLL 179 (388)
T ss_dssp SSSTTC-EEEEEECSSCEEEEEECSS-------EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE-EEEEE
T ss_pred chhhhc-cCccceeecceeeEEecCC-------CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc-eEEEE
Confidence 876542 2234456666777665431 38899999999999999877643 45689999999999 78899
Q ss_pred CCCeEEEEeCCCCee--EEEe------e---cCCceEEEEEecCcceeee
Q 010816 259 QDCTIKVWETTQGKL--IREL------K---GHGHWVNSLALSTEYALRT 297 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~--~~~~------~---~~~~~v~~~~~~~~~~~~~ 297 (500)
.||++++|+...+.. .+++ . +|...|.++.+.+++.+..
T Consensus 180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 999999998877765 5555 2 3678899999998765544
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=2e-09 Score=98.99 Aligned_cols=224 Identities=11% Similarity=0.039 Sum_probs=143.9
Q ss_pred ceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeE
Q 010816 195 WITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLI 274 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~ 274 (500)
.-.+..|.|. ....+++...++.|..||..+++... + .....+.++++++++.++.+. ++.|.+||..+++..
T Consensus 14 ~~Egp~w~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~ 86 (297)
T 3g4e_A 14 CGESPVWEEV----SNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI-GTKFCALNWKEQSAV 86 (297)
T ss_dssp BEEEEEEETT----TTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEE
T ss_pred cccCCeEECC----CCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE-CCeEEEEECCCCcEE
Confidence 3456777652 23456677778999999998776532 2 234568899999998877776 568999999887654
Q ss_pred EEeec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEee-----------CCC
Q 010816 275 RELKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGS-----------DDF 339 (500)
Q Consensus 275 ~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s-----------~d~ 339 (500)
..... ....+..++++++.. .+++.. ..+
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~------------------------------------l~~~~~~~~~~~~~~~~~~~ 130 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGR------------------------------------YFAGTMAEETAPAVLERHQG 130 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSC------------------------------------EEEEEEECCSBTTBCCTTCE
T ss_pred EEEecCCCCCCCCCCCEEECCCCC------------------------------------EEEecCCcccccccccCCCc
Confidence 33221 123455666655432 222211 122
Q ss_pred eEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeC--CCCceEE--EE---eCCcccEEEEEee
Q 010816 340 TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNG--TTGKFVA--VF---RGHVGPVYQIRFE 411 (500)
Q Consensus 340 ~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~--~~~~~~~--~~---~~h~~~v~~~~~~ 411 (500)
.|+.++.. . ....+..+....+.++|+||++.| ++.+.++.|.+|++ .+|.... .+ ..+.+.
T Consensus 131 ~l~~~d~~--g-~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~------- 200 (297)
T 3g4e_A 131 ALYSLFPD--H-HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI------- 200 (297)
T ss_dssp EEEEECTT--S-CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-------
T ss_pred EEEEEECC--C-CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-------
Confidence 34444432 1 122233344567899999999866 55566889999986 4565321 11 111111
Q ss_pred eeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc-CCCCEEEEEe
Q 010816 412 LIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGG 490 (500)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~ 490 (500)
...+++.++|++.++...++.|.+||..+++.+..+..+...+++++|. ||++.|+.++
T Consensus 201 --------------------p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 201 --------------------PDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp --------------------EEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEE
T ss_pred --------------------CCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEc
Confidence 1123568899988888888899999999888888777777789999998 8988876655
Q ss_pred C
Q 010816 491 K 491 (500)
Q Consensus 491 ~ 491 (500)
.
T Consensus 261 ~ 261 (297)
T 3g4e_A 261 A 261 (297)
T ss_dssp B
T ss_pred C
Confidence 4
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.33 E-value=4.9e-09 Score=99.37 Aligned_cols=274 Identities=10% Similarity=-0.014 Sum_probs=162.6
Q ss_pred cCCCCEEEEEeC--CC---eEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe----------CCCcEE
Q 010816 159 SADGKHLVSGSK--AG---ELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDAR 223 (500)
Q Consensus 159 s~~~~~l~s~~~--d~---~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s----------~dg~v~ 223 (500)
.|++++++++.. .. +|.++|..+++.....-.+ ... .+.++| +++++..+. .++.|.
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g-~~p--~i~~sp-----Dg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG-FLP--NPVAAH-----SGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC-CCC--CeEECC-----CCCEEEEEeccccccccCCCCCeEE
Confidence 467777766553 22 8899999988765432222 222 566555 455665554 367899
Q ss_pred EEECCCCeEEEEecCc-------cccEEEEEeCCCCe-EEEEeC--CCeEEEEeCCCCeeEEE-eecCCceEEEEEecCc
Q 010816 224 IWDVSLRKCVICLSGH-------TLAVTCVKWGGDGV-IYTGSQ--DCTIKVWETTQGKLIRE-LKGHGHWVNSLALSTE 292 (500)
Q Consensus 224 iwd~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~t~~~--dg~i~lwd~~~~~~~~~-~~~~~~~v~~~~~~~~ 292 (500)
+||..+.+.+..+.-. ...-..+.+++||. |+.+.. ++.|.++| .+++.+.. +..... +.+.+.
T Consensus 101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~----~~~~~~ 175 (373)
T 2mad_H 101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC----YHIHPG 175 (373)
T ss_pred EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce----EEEEeC
Confidence 9999887766554211 11234678999874 665553 57899999 99887766 442221 111111
Q ss_pred ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee-----eecccCcEEEEE
Q 010816 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR-----MTGHQQLVNHVY 367 (500)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~-----~~~h~~~v~~l~ 367 (500)
....+++.+.|+.+.++|. ..+..... ..+.........
T Consensus 176 -----------------------------------~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~ 219 (373)
T 2mad_H 176 -----------------------------------APSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred -----------------------------------CCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecce
Confidence 1234566777888888887 33221010 011111123355
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEE
Q 010816 368 FSPDGQWVASASFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLL 445 (500)
Q Consensus 368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 445 (500)
+.+++..++..+.++.+.+.|..++.. +..+.-.........+ .......++++|+++.++
T Consensus 220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~-----------------~p~g~~~~~~s~d~~~ly 282 (373)
T 2mad_H 220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTW-----------------RPGGWQQVAYLKSSDGIY 282 (373)
T ss_pred eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccce-----------------ecCceEeEEECCCCCEEE
Confidence 677665555555788999999876532 2222110000000000 001111235689988877
Q ss_pred EEEC----------CCcEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEEe-CCCcEEEec
Q 010816 446 SGSK----------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM 499 (500)
Q Consensus 446 s~s~----------d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~-~D~~v~iW~ 499 (500)
.+.. ++.|.++|+.+++.+..++.. ...+++.|+|||+ .++++. .++.|.+++
T Consensus 283 V~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD 347 (373)
T 2mad_H 283 LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HDVDAISVAQDGGPDLYALSAGTEVLHIYD 347 (373)
T ss_pred EEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CCcCeEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 7653 357999999999988777532 3578999999999 788877 589999886
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=2.7e-09 Score=102.62 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=150.7
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--cEEEEECC
Q 010816 151 NWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG--DARIWDVS 228 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg--~v~iwd~~ 228 (500)
.....|+|+++++++++...++.|+.||+.++..... ..... ... +.|.+ +.+.++.+..++ .|.+++..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~-~~~~~-~~~-ia~~~-----~g~~l~~~d~~~~~~I~~~d~~ 202 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV-HPGFK-GGK-PAVTK-----DKQRVYSIGWEGTHTVYVYMKA 202 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE-EETCC-BCB-CEECT-----TSSEEEEEBSSTTCEEEEEEGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe-eccCC-CCc-eeEec-----CCCcEEEEecCCCceEEEEEcC
Confidence 3578999999998778877789999999987654321 11111 112 55544 445667776655 78888876
Q ss_pred CCeEEEEe----cCccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCCCeeEEE----eecCCceE--EEEEecCcceeee
Q 010816 229 LRKCVICL----SGHTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQGKLIRE----LKGHGHWV--NSLALSTEYALRT 297 (500)
Q Consensus 229 ~~~~~~~~----~~h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~~~~~~~----~~~~~~~v--~~~~~~~~~~~~~ 297 (500)
.+.....+ ........++++++ ++.|+.+..++.|+.||..++..... ..+....- ..+++++.
T Consensus 203 ~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~----- 277 (409)
T 3hrp_A 203 SGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV----- 277 (409)
T ss_dssp GTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT-----
T ss_pred CCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC-----
Confidence 55433333 21344567788888 78888888889999999887653221 11111111 14444432
Q ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc---------------cCc
Q 010816 298 GAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH---------------QQL 362 (500)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h---------------~~~ 362 (500)
.+..+++...++.|+.|+.... ...+.++ -..
T Consensus 278 ------------------------------~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~ 324 (409)
T 3hrp_A 278 ------------------------------DSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQ 324 (409)
T ss_dssp ------------------------------TTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSS
T ss_pred ------------------------------CCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCC
Confidence 1234556666788888875432 2222232 245
Q ss_pred EEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816 363 VNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 441 (500)
...++++|+|+++++-+ .++.|+.|++.+|+.. ++.++.+. . .+ .... .....-.....++++++|
T Consensus 325 P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~-~~~g~~~~-~--g~--------~~g~-~~~~~~~~P~giavd~~g 391 (409)
T 3hrp_A 325 PNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVS-TVAGQVDV-A--SQ--------IDGT-PLEATFNYPYDICYDGEG 391 (409)
T ss_dssp EEEEEECTTCCEEEEETTTTCEEEEEETTTTEEE-EEEECTTC-B--SC--------CCBS-TTTCCBSSEEEEEECSSS
T ss_pred CeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEE-EEeCCCCC-C--Cc--------CCCC-hhceEeCCceEEEEcCCC
Confidence 78999999999888887 8899999998777643 33333110 0 00 0000 000000122345778998
Q ss_pred CEEEEEECCCcEEEEEC
Q 010816 442 RLLLSGSKDSTLKVWDI 458 (500)
Q Consensus 442 ~~l~s~s~d~~v~iwd~ 458 (500)
.++++-..++.|+.+++
T Consensus 392 ~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEESTTCEEEEEEE
T ss_pred CEEEEECCCCeEEEEEe
Confidence 88888888888888765
No 211
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.28 E-value=2.4e-09 Score=102.11 Aligned_cols=282 Identities=14% Similarity=0.064 Sum_probs=169.2
Q ss_pred CCCCeEEEEeC-C----CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCC
Q 010816 118 PDGRQLASGSG-D----TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTG 182 (500)
Q Consensus 118 p~~~~lat~~~-d----~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~ 182 (500)
|++++++.... + +.|.++|..+.+.+..+..-..+ .+.++|||++|+.+. .++.|.++|..++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 46666665544 3 69999999999888777644455 799999999888775 3678999999988
Q ss_pred CcccccccC-cc-----cceEEEEeeeeecCCCCceEEEEeC--CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeE
Q 010816 183 KPSGNPLSG-HK-----KWITGISWEPVHLNAPCRRFVSASK--DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVI 254 (500)
Q Consensus 183 ~~~~~~~~~-~~-----~~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l 254 (500)
+.......+ .. ..-..+.+ ..++++++.+.. ++.|.+.|+.+++.+..+.-.. ...+.-.....+
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~-----spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~ 232 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNAL-----TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVF 232 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEE-----CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEE
T ss_pred cEEEEEECCCccccccCCCcceEEE-----cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEE
Confidence 754432111 00 01122333 346667776653 5789999999998877664311 111111122356
Q ss_pred EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 255 YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 255 ~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
++.+.||.+.+.+..+++...... .+.. .... .+. .. ......+..++.
T Consensus 233 v~~~~dG~~~~V~~~~~~v~~~~~----~~~~--v~~~-p~~--------~~----------------~~~~~dg~~~~~ 281 (426)
T 3c75_H 233 YMNCRDGSLARVDFADGETKVTNT----EVFH--TEDE-LLI--------NH----------------PAFSLRSGRLVW 281 (426)
T ss_dssp EEEETTSSEEEEECCTTCCEEEEC----CCCS--CTTS-CBC--------SC----------------CEECTTTCEEEE
T ss_pred EEEcCCCCEEEEECCCCcEEEEee----eeec--cCCC-cee--------eE----------------eeecCCCCEEEE
Confidence 677788888888886655443211 0000 0000 000 00 000111234444
Q ss_pred eeCCCeEEEEcCCCCCC----Cceee------ec-ccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCc
Q 010816 335 GSDDFTMFLWEPAVSKQ----PKTRM------TG-HQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGK 393 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~----~~~~~------~~-h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~ 393 (500)
.+..+.+.+.|...... ..... .+ .......++++|+++.+.+... ++.|.+.|..+++
T Consensus 282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k 361 (426)
T 3c75_H 282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE 361 (426)
T ss_dssp EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence 45677888888643221 00000 00 0111113689999887665532 3579999999999
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccc
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDL 467 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~ 467 (500)
.+..+..-.. - ..++|+|||+ +++++. .++.|.++|+.+++.++.+
T Consensus 362 vv~~I~vg~~-P---------------------------~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 362 RINKIELGHE-I---------------------------DSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEEEEEE-E---------------------------CEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCC-c---------------------------CeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 8876642111 1 1236799999 888888 5899999999999988775
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.26 E-value=6.6e-10 Score=104.07 Aligned_cols=241 Identities=13% Similarity=0.084 Sum_probs=150.6
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 010816 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE 173 (500)
Q Consensus 113 ~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~l~s~~~--d~~ 173 (500)
.++++|||++|+.++ .++.|.+||..+.+.+..+.-. ......+.|+|||++|+.+.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999887765 3678999999998887665321 123456899999999888764 689
Q ss_pred EEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc----ccEE-EEE
Q 010816 174 LQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT----LAVT-CVK 247 (500)
Q Consensus 174 i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~----~~v~-~~~ 247 (500)
|.++|+.+++.....-.... ....|.. .+.|++.+.||.+.+.++.. ++.......+. .++. ...
T Consensus 162 VsVID~~t~~vv~tI~v~g~-----~~~~P~g----~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~ 232 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDC-----YHIFPTA----PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPA 232 (386)
T ss_dssp EEEEETTTTEEEEEEECCSE-----EEEEEEE----TTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCE
T ss_pred EEEEECCCCcEEEEEECCCc-----ceeecCC----CceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccce
Confidence 99999998875543211110 1112322 35678889999999999976 55432221111 1111 124
Q ss_pred e-CCCCeEEEEeCCCeEEEEeCCCCee--EEEeec-C-----Cc----eEEEEEecCcceeeeccccCCCCCCCCHHHHH
Q 010816 248 W-GGDGVIYTGSQDCTIKVWETTQGKL--IRELKG-H-----GH----WVNSLALSTEYALRTGAFDHTGKQYSSPEEMK 314 (500)
Q Consensus 248 ~-~~~~~l~t~~~dg~i~lwd~~~~~~--~~~~~~-~-----~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (500)
| .++|.++..+.+|.|.+.|..++.. ...+.. . .. ....++++++
T Consensus 233 ~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~---------------------- 290 (386)
T 3sjl_D 233 YSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRA---------------------- 290 (386)
T ss_dssp EETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETT----------------------
T ss_pred eEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCC----------------------
Confidence 4 3577766678899999999876532 221110 0 00 0011222211
Q ss_pred HHHHHhhhhhcCCCCcEEEEeeC----------CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEE-eCCC
Q 010816 315 KAALERYNKIKGNAPERLVSGSD----------DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASA-SFDK 382 (500)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~s~s~----------d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasg-s~Dg 382 (500)
..++..... .+.|.+.|....+.......++ .+..|++++|++ +|++. ..++
T Consensus 291 --------------~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~ 354 (386)
T 3sjl_D 291 --------------LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDK 354 (386)
T ss_dssp --------------TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTT
T ss_pred --------------CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCC
Confidence 223333221 2468888877655444444443 578999999996 66554 5589
Q ss_pred cEEEEeCCCCceEEEEeC
Q 010816 383 SIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 383 ~i~lwd~~~~~~~~~~~~ 400 (500)
.|.++|..+++.+.+++.
T Consensus 355 ~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 355 TLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred eEEEEECCCCcEEEEecC
Confidence 999999999998887653
No 213
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.26 E-value=1.6e-10 Score=108.60 Aligned_cols=172 Identities=11% Similarity=-0.025 Sum_probs=108.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~ 231 (500)
.+..+++++...++++|+.+ .+.+|++++.+... ...... +.+ .
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~---~~~~~~-----~~~---------------------------~ 82 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHI---TSDSTP-----LTF---------------------------K 82 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHH---HSSSCC-----CCC---------------------------S
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhh---cccccc-----ccc---------------------------e
Confidence 57889999999999999987 45569865322100 000000 000 0
Q ss_pred EEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816 232 CVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (500)
Q Consensus 232 ~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (500)
.. ..+.. |+.++| .+..|+++ .++.|++||+.+-........+...+..+...+
T Consensus 83 ~~---~~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-------------------- 136 (388)
T 1xip_A 83 WE---KEIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-------------------- 136 (388)
T ss_dssp EE---EECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECS--------------------
T ss_pred EE---eeCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecC--------------------
Confidence 00 11333 677777 66777777 777888888765555555555555554443221
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCC
Q 010816 312 EMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTT 391 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~ 391 (500)
+ .++.++.||.+.+||+...... .+...|.|++|||+| ++.|..||++++|+...
T Consensus 137 -----------------p-~~av~~~dG~L~v~dl~~~~~~-----~~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 137 -----------------N-TLVILNSVNDLSALDLRTKSTK-----QLAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp -----------------S-EEEEEETTSEEEEEETTTCCEE-----EEEESEEEEEECSSE--EEEEETTSCEEEEEEET
T ss_pred -----------------C-CEEEEECCCCEEEEEccCCccc-----cccCCceEEEEcCCc--eEEEEcCCcEEEEcCCC
Confidence 1 2677788888888887543321 244679999999999 78899999999999887
Q ss_pred Cce--EEEE------e---CCcccEEEEEe
Q 010816 392 GKF--VAVF------R---GHVGPVYQIRF 410 (500)
Q Consensus 392 ~~~--~~~~------~---~h~~~v~~~~~ 410 (500)
+++ ..++ . +|...|.++.+
T Consensus 192 ~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 192 GEMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp TEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred ccccccceecCCcccccccCCCeeEEEEEE
Confidence 775 5555 2 35666666643
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1e-08 Score=95.55 Aligned_cols=220 Identities=12% Similarity=0.087 Sum_probs=135.9
Q ss_pred EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
.+..|.|. ....+++...++.|..||..+++... +. ....+.++.|++++.++.++.+ .|.+||..+++....
T Consensus 52 egp~~~~~----~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~~~~ 124 (326)
T 2ghs_A 52 EGPTFDPA----SGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTLH 124 (326)
T ss_dssp EEEEEETT----TTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEEE
T ss_pred cCCeEeCC----CCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcEEEE
Confidence 45666652 23456677778899999998776432 22 2356889999999987777755 499999888765432
Q ss_pred eec----CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC------CCeEEEEcC
Q 010816 277 LKG----HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD------DFTMFLWEP 346 (500)
Q Consensus 277 ~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~------d~~v~~wd~ 346 (500)
... ....+..++++++.. .+++... .+.|+.++
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~------------------------------------l~v~~~~~~~~~~~~~l~~~~- 167 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGA------------------------------------LWIGTMGRKAETGAGSIYHVA- 167 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSC------------------------------------EEEEEEETTCCTTCEEEEEEE-
T ss_pred eeCCCCCCCCCCCCEEECCCCC------------------------------------EEEEeCCCcCCCCceEEEEEe-
Confidence 221 123456666665432 2222221 23444444
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCC--CC-ce-----EEEEeCCcccEEEEEeeeeeeec
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGT--TG-KF-----VAVFRGHVGPVYQIRFELIYCFR 417 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~--~~-~~-----~~~~~~h~~~v~~~~~~~~~~~~ 417 (500)
. . ....+..+....+.++|+|||+.|+.+ +.++.|.+||+. +| +. +..+....+..
T Consensus 168 ~--g-~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p------------ 232 (326)
T 2ghs_A 168 K--G-KVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM------------ 232 (326)
T ss_dssp T--T-EEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE------------
T ss_pred C--C-cEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC------------
Confidence 1 1 112222333457899999999876544 557899999985 55 32 11111111111
Q ss_pred CCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEc-CCCCEEEEEeC
Q 010816 418 YPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWS-PDGEKVASGGK 491 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s-~dg~~l~s~~~ 491 (500)
..+.+.++|.+.++...++.|.+||. .++....+..+...+++++|+ |+++.|+.++.
T Consensus 233 ---------------~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 233 ---------------DGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ---------------EEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred ---------------CeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 12356788988887777789999998 566656665566679999998 89887755543
No 215
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.25 E-value=1.1e-09 Score=112.35 Aligned_cols=310 Identities=13% Similarity=0.121 Sum_probs=180.3
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCC-----------CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKN-----------WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~-----------~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
+..|+.++.++.|.-+|..+++.+........ ....+++ ++..|+.++.|+.|..+|..+|+.....
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 55677777889999999999988877653321 0012222 4568889999999999999999864322
Q ss_pred ccC-cccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCcccc-------------------
Q 010816 189 LSG-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLA------------------- 242 (500)
Q Consensus 189 ~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~------------------- 242 (500)
... .......+.-.|.. ....++.++. ++.|+.+|..+++.+..+......
T Consensus 155 ~~~~~~~~~~~~~~~p~v---~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~ 231 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRV---FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP 231 (677)
T ss_dssp ETTTTCCSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred cCCcCcCcCcccccCcEE---ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence 111 00000011111211 1234555543 789999999999987665421110
Q ss_pred -------------EEEEEeCCC-CeEEEEeCCC-------------------eEEEEeCCCCeeEEEeecCCc--eEEEE
Q 010816 243 -------------VTCVKWGGD-GVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGH--WVNSL 287 (500)
Q Consensus 243 -------------v~~~~~~~~-~~l~t~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~--~v~~~ 287 (500)
...++++++ +.++.+..++ +|..+|..+|+.+..++...+ +-...
T Consensus 232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~ 311 (677)
T 1kb0_A 232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS 311 (677)
T ss_dssp GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence 013455543 5677776654 599999999998876653221 10000
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC------
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ------ 361 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~------ 361 (500)
...+ .+.... ..+.....++.++.+|.++++|....+...........
T Consensus 312 ~~~p--~l~~~~------------------------~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d 365 (677)
T 1kb0_A 312 TQPM--ILADIK------------------------IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD 365 (677)
T ss_dssp CSCC--EEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC
T ss_pred CCCc--EEEecc------------------------cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccC
Confidence 0000 000000 00000145788899999999997665432111100000
Q ss_pred ----cE------------------------EEEEECCCCCEEEEEeCC--------------------------------
Q 010816 362 ----LV------------------------NHVYFSPDGQWVASASFD-------------------------------- 381 (500)
Q Consensus 362 ----~v------------------------~~l~~sp~g~~lasgs~D-------------------------------- 381 (500)
.+ ..++|+|++.++.+...+
T Consensus 366 ~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~ 445 (677)
T 1kb0_A 366 KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKF 445 (677)
T ss_dssp TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEE
T ss_pred CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccc
Confidence 01 156889988888775432
Q ss_pred -----------CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECC
Q 010816 382 -----------KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKD 450 (500)
Q Consensus 382 -----------g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d 450 (500)
|.|..||+.+|+.+-.++... +... ..++.++.+++.++.|
T Consensus 446 ~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~---------------------------g~~~~~g~~v~~g~~d 497 (677)
T 1kb0_A 446 FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNG---------------------------GTLTTAGNVVFQGTAD 497 (677)
T ss_dssp ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCC---------------------------CEEEETTTEEEEECTT
T ss_pred cccccCCCCCccEEEEEeCCCCcEEeecCCCC-CCcC---------------------------cceEeCCCEEEEECCC
Confidence 678889998888765543211 1000 0235577888889999
Q ss_pred CcEEEEECCCccccccccCcc-cCEEEEEEcCCCCEEEE
Q 010816 451 STLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVAS 488 (500)
Q Consensus 451 ~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~s 488 (500)
+.+++||.++++.+..+.-.. ....-+.|+.+|+.++.
T Consensus 498 g~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 999999999999887664322 12233456778875544
No 216
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.22 E-value=8e-10 Score=114.20 Aligned_cols=243 Identities=14% Similarity=0.084 Sum_probs=145.6
Q ss_pred cCCcccEEEEEEcCCCCeEEEE-----eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC-------
Q 010816 105 AGHTEAVLSVAFSPDGRQLASG-----SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG------- 172 (500)
Q Consensus 105 ~gh~~~V~~~~~sp~~~~lat~-----~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~------- 172 (500)
.+|...+..++|||||++||-+ +.+.+|++||+.+++.+... .+......++|+ ||+.|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCccccccc
Confidence 3567789999999999999843 33367999999998865321 111112567899 999999888774
Q ss_pred ------eEEEEeCCCCCcccccc---cC-cccceEEEEeeeeecCCCCceEE-EEe---CCCcEEEEECCCCe-EEEEec
Q 010816 173 ------ELQCWDPQTGKPSGNPL---SG-HKKWITGISWEPVHLNAPCRRFV-SAS---KDGDARIWDVSLRK-CVICLS 237 (500)
Q Consensus 173 ------~i~~wd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~~~~~~~-s~s---~dg~v~iwd~~~~~-~~~~~~ 237 (500)
.|.+|++.++......+ .. |.....++.|+| +++.++ +.+ .+..++++|+..+. ....+.
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-----DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-----TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-----CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 39999988765322112 22 344566777765 445543 333 23589999987653 334444
Q ss_pred CccccEEEEEeCCCCeE-EEEeCC---CeEEEEeCCCCee--EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHH
Q 010816 238 GHTLAVTCVKWGGDGVI-YTGSQD---CTIKVWETTQGKL--IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPE 311 (500)
Q Consensus 238 ~h~~~v~~~~~~~~~~l-~t~~~d---g~i~lwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (500)
.+...........++.| +....+ +.|..+|+.++.. .+.+..+...+. .++++
T Consensus 278 ~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~------------------- 336 (693)
T 3iuj_A 278 GDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG------------------- 336 (693)
T ss_dssp CSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE-------------------
T ss_pred CCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE-------------------
Confidence 45444433322223344 344333 5788999887643 234444433332 33322
Q ss_pred HHHHHHHHhhhhhcCCCCcEEEE-eeCCC--eEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCC----Cc
Q 010816 312 EMKKAALERYNKIKGNAPERLVS-GSDDF--TMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFD----KS 383 (500)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~s-~s~d~--~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~D----g~ 383 (500)
++.++. ...++ .|++|++... ....+ ......+..+.++|++..|+....+ +.
T Consensus 337 -----------------g~~lv~~~~~~g~~~l~~~d~~g~--~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 337 -----------------SGYLFAEYMVDATARVEQFDYEGK--RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp -----------------TTEEEEEEEETTEEEEEEECTTSC--EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred -----------------CCEEEEEEEECCeeEEEEEECCCC--eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 223443 34454 5788886532 11222 2234567778888888776655444 78
Q ss_pred EEEEeCCCCce
Q 010816 384 IKLWNGTTGKF 394 (500)
Q Consensus 384 i~lwd~~~~~~ 394 (500)
|+.||+.+++.
T Consensus 398 l~~~d~~~g~~ 408 (693)
T 3iuj_A 398 LYRFEPKSGAI 408 (693)
T ss_dssp EEEECTTTCCE
T ss_pred EEEEECCCCeE
Confidence 99999988764
No 217
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.21 E-value=1.9e-08 Score=92.34 Aligned_cols=215 Identities=11% Similarity=0.116 Sum_probs=128.5
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-
Q 010816 111 VLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP- 188 (500)
Q Consensus 111 V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~- 188 (500)
--+..|+|++. ++++...++.|..||..++... .+ .....+.+++++++|+++++. ++.|.+||..+++.....
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~ 90 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLAT 90 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEe
Confidence 34678899654 5566667899999999876542 22 245679999999999965553 578999999877532111
Q ss_pred c-cC-cccceEEEEeeeeecCCCCceEEEEeC---------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-E-E
Q 010816 189 L-SG-HKKWITGISWEPVHLNAPCRRFVSASK---------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-I-Y 255 (500)
Q Consensus 189 ~-~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~---------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~ 255 (500)
. .+ ....+..+.+.| +++.+++... ...-.+|.+.....+..+..+......++|++++. + +
T Consensus 91 ~~~~~~~~~~~di~~d~-----dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv 165 (297)
T 3g4e_A 91 VDNDKKNNRFNDGKVDP-----AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYY 165 (297)
T ss_dssp CCTTCSSEEEEEEEECT-----TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEE
T ss_pred cCCCCCCCCCCCEEECC-----CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEE
Confidence 0 00 112345555543 3444443321 12345555442211222222233446788888773 4 4
Q ss_pred EEeCCCeEEEEeC--CCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEE
Q 010816 256 TGSQDCTIKVWET--TQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLV 333 (500)
Q Consensus 256 t~~~dg~i~lwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (500)
+.+.++.|.+||+ .+|..... ..++
T Consensus 166 ~~~~~~~i~~~~~d~~~G~~~~~-----------------------------------------------------~~~~ 192 (297)
T 3g4e_A 166 IDSLSYSVDAFDYDLQTGQISNR-----------------------------------------------------RSVY 192 (297)
T ss_dssp EEGGGTEEEEEEECTTTCCEEEE-----------------------------------------------------EEEE
T ss_pred ecCCCCcEEEEeccCCCCcccCc-----------------------------------------------------EEEE
Confidence 4556778888875 33332100 0000
Q ss_pred EeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 334 SGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 334 s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
+ +..+......++++++|++.++...++.|..||..+|+.+..+..+...+.++
T Consensus 193 -----------~----------~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~ 246 (297)
T 3g4e_A 193 -----------K----------LEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSC 246 (297)
T ss_dssp -----------E----------CCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEE
T ss_pred -----------E----------CCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEE
Confidence 0 01112346678999999988888788899999999999988877665555555
No 218
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.20 E-value=1.2e-08 Score=98.00 Aligned_cols=234 Identities=12% Similarity=0.123 Sum_probs=148.0
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSG 186 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~ 186 (500)
.....++|+|+++++++...++.|++||..++.......... ... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 467899999999988887788999999998776544433322 233 99999999999888866 78888876554311
Q ss_pred cc--c-cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE----ecCccccE--EEEEeCC-CCeEEE
Q 010816 187 NP--L-SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC----LSGHTLAV--TCVKWGG-DGVIYT 256 (500)
Q Consensus 187 ~~--~-~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~----~~~h~~~v--~~~~~~~-~~~l~t 256 (500)
.. . ........++++.| ....+..+..++.|+.||...+..... ..++...- ..++|++ ++.|+.
T Consensus 209 ~~g~~~~~~~~~p~~iav~p-----~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDE-----TEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEECCTTSCSCCCBCEECT-----TSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred EeeeccchhcCCcEEEEEeC-----CCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 11 0 11223345566554 223455567788999999987654332 22222222 2788988 466555
Q ss_pred E-eCCCeEEEEeCCCCeeEEEeecCC---------------ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHh
Q 010816 257 G-SQDCTIKVWETTQGKLIRELKGHG---------------HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (500)
Q Consensus 257 ~-~~dg~i~lwd~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (500)
+ ..++.|+.|+.... +..+.++. .....++++++
T Consensus 284 ~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d---------------------------- 333 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED---------------------------- 333 (409)
T ss_dssp EETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT----------------------------
T ss_pred EeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC----------------------------
Confidence 4 56788999986532 22222221 11222333222
Q ss_pred hhhhcCCCCcEEEEee-CCCeEEEEcCCCCCCCceeeecc---------------cCcEEEEEECCCCCEEEEEeCCCcE
Q 010816 321 YNKIKGNAPERLVSGS-DDFTMFLWEPAVSKQPKTRMTGH---------------QQLVNHVYFSPDGQWVASASFDKSI 384 (500)
Q Consensus 321 ~~~~~~~~~~~~~s~s-~d~~v~~wd~~~~~~~~~~~~~h---------------~~~v~~l~~sp~g~~lasgs~Dg~i 384 (500)
+..+++-+ .++.|+.|++.... ...+.++ -.....++++++|.++++-..++.|
T Consensus 334 --------G~lyvad~~~~~~I~~~~~~~G~--v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~I 403 (409)
T 3hrp_A 334 --------GNFYIVDGFKGYCLRKLDILDGY--VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAI 403 (409)
T ss_dssp --------CCEEEEETTTTCEEEEEETTTTE--EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEE
T ss_pred --------CCEEEEeCCCCCEEEEEECCCCE--EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeE
Confidence 34556666 78889999853321 2233333 2458899999999888888888888
Q ss_pred EEEeC
Q 010816 385 KLWNG 389 (500)
Q Consensus 385 ~lwd~ 389 (500)
+.+++
T Consensus 404 r~i~~ 408 (409)
T 3hrp_A 404 RKYAV 408 (409)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.18 E-value=1.2e-09 Score=102.69 Aligned_cols=269 Identities=12% Similarity=0.018 Sum_probs=153.7
Q ss_pred CCEEEEEEcCCCCEEEEEe--CCCeEEEEeCCCCCcccc-----cccCcccceEEEEeeeeecCCCCceEEEEeC-----
Q 010816 151 NWVLCIAWSADGKHLVSGS--KAGELQCWDPQTGKPSGN-----PLSGHKKWITGISWEPVHLNAPCRRFVSASK----- 218 (500)
Q Consensus 151 ~~v~~v~~s~~~~~l~s~~--~d~~i~~wd~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~----- 218 (500)
..+..++++++|+++++.. .++.++||.+.+++.... ...++-..+.++.+.+ +++.+++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-----~g~L~v~D~g~~~~~ 91 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-----NGIVWMLDNGNQSKS 91 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-----SSEEEEEECHHHHTS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-----CCcEEEEcCCCCcCC
Confidence 6789999999999988864 234356665544432211 1122345667777654 2334444333
Q ss_pred CCcEEEEECCCCeEEEEecC------ccccEEEEEeCCC-CeEEE-Ee---CCCeEEEEeCCCCeeEEEeecCCceEE-E
Q 010816 219 DGDARIWDVSLRKCVICLSG------HTLAVTCVKWGGD-GVIYT-GS---QDCTIKVWETTQGKLIRELKGHGHWVN-S 286 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~-~~l~t-~~---~dg~i~lwd~~~~~~~~~~~~~~~~v~-~ 286 (500)
+..|.+||+.+++.+..+.- +......++++++ +.++. .. .++.|.+||+.+++..+.+..|..... .
T Consensus 92 ~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 92 VPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred CCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 57899999998886655432 1234567888854 55544 44 578999999988876665543211000 0
Q ss_pred EEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEE
Q 010816 287 LALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHV 366 (500)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l 366 (500)
..+.. .+..+.+.+.++.+..|. ..++.+
T Consensus 172 ~~~~~------------------------------------~g~~~~~~~~~g~~~~~~---------------~~~~gi 200 (343)
T 2qe8_A 172 IDLVI------------------------------------DGVPVQIGQPDGTVIRPH---------------LGVNGI 200 (343)
T ss_dssp CCCEE------------------------------------TTEECBEECTTSCEECCC---------------CCEEEE
T ss_pred cceeE------------------------------------CCEEEEeccCCCceecee---------------ccccee
Confidence 00000 012233445556655443 236789
Q ss_pred EECCCCCEEEEEeCCC-cEEEEeCC---CCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC
Q 010816 367 YFSPDGQWVASASFDK-SIKLWNGT---TGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR 442 (500)
Q Consensus 367 ~~sp~g~~lasgs~Dg-~i~lwd~~---~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 442 (500)
+|+|+|+.|+.+..++ .+..++.. .+..-. -+ ....+.. .........++++++|.
T Consensus 201 a~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~------------------~g~~g~pdgia~d~~G~ 260 (343)
T 2qe8_A 201 VLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTD-AE-LGSKIER------------------YSEKPICDGISIDKDHN 260 (343)
T ss_dssp EECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCH-HH-HHTTCEE------------------EEECCSCSCEEECTTCC
T ss_pred EeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCCh-hh-hhcceEe------------------cccCCCCceEEECCCCC
Confidence 9999999888887766 44444321 110000 00 0000000 00000112246789999
Q ss_pred EEEEEECCCcEEEEECCCccccccccC-cccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 443 LLLSGSKDSTLKVWDIRTQKLKQDLPG-HADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 443 ~l~s~s~d~~v~iwd~~~~~~~~~~~~-h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
++++...++.|.+||.++++....... +.....+++|.++|+.+++.+..+++
T Consensus 261 l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 261 IYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred EEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccc
Confidence 999988899999999855554322221 24568899999999888887755443
No 220
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.14 E-value=2.2e-09 Score=100.22 Aligned_cols=296 Identities=14% Similarity=0.097 Sum_probs=175.0
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc
Q 010816 114 VAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK 193 (500)
Q Consensus 114 ~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 193 (500)
..+..++. |..++.++.+..|| .+++.+.....+...+.++...++|. |..++.+ |..+|. +++.... .....
T Consensus 25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~-~~~~~ 97 (330)
T 3hxj_A 25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWR-FDTKK 97 (330)
T ss_dssp CEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGG-SCC--
T ss_pred ceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEE-EECCC
Confidence 34445554 55666788899999 77776554444444567777776764 5555544 888886 5543321 11111
Q ss_pred cceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816 194 KWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273 (500)
Q Consensus 194 ~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~ 273 (500)
........ ....+..++.++.+..+|.. ++.......+...+.++...+++.++.++.++.|..+|.. ++.
T Consensus 98 ~~~~~~~~-------~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~ 168 (330)
T 3hxj_A 98 AIVSDFTI-------FEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE 168 (330)
T ss_dssp ---CCEEE-------ETTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE
T ss_pred CcccCceE-------ECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE
Confidence 11111111 13467788889999999988 7666555544444555666778889999999999999988 776
Q ss_pred EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCc
Q 010816 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPK 353 (500)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~ 353 (500)
...+......+.++.... ...+..++ +.+..+| .... ..
T Consensus 169 ~~~~~~~~~~~~~~~~d~-------------------------------------~g~l~v~t--~~l~~~d-~~g~-~~ 207 (330)
T 3hxj_A 169 KWRFKTNDAITSAASIGK-------------------------------------DGTIYFGS--DKVYAIN-PDGT-EK 207 (330)
T ss_dssp EEEEECSSCCCSCCEECT-------------------------------------TCCEEEES--SSEEEEC-TTSC-EE
T ss_pred eEEEecCCCceeeeEEcC-------------------------------------CCEEEEEe--CEEEEEC-CCCc-EE
Confidence 655543322222222211 12344455 7788888 3222 12
Q ss_pred eeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccce
Q 010816 354 TRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMS 433 (500)
Q Consensus 354 ~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (500)
.........+.++..+++|. |..++.++.|..+|. +++.+..+....... .
T Consensus 208 ~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~---------------------------~ 258 (330)
T 3hxj_A 208 WNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIE---------------------------S 258 (330)
T ss_dssp EEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCC---------------------------S
T ss_pred EEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCcc---------------------------c
Confidence 22222335577788888876 445667888888874 555444333211100 0
Q ss_pred eeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 434 LYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.....+++ .|..++.++.+..+|. +++...........+.++...++|+ |..++.+|.+++.
T Consensus 259 ~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 259 SPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL 320 (330)
T ss_dssp CCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred cceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence 01223344 5667788888999996 5555444433344556667777775 6678889988864
No 221
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=1.1e-08 Score=105.75 Aligned_cols=241 Identities=15% Similarity=0.149 Sum_probs=141.1
Q ss_pred CCCCCEEEEEEcCCCCEEEE-----EeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCC--
Q 010816 148 GHKNWVLCIAWSADGKHLVS-----GSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDG-- 220 (500)
Q Consensus 148 ~h~~~v~~v~~s~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg-- 220 (500)
+|...+..++|||||++||- |+.+..|++||+.+|+.....+.. ....++.|. +++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws------Dg~~l~y~~~~~~~ 197 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL------GNEGFFYSSYDKPD 197 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE------TTTEEEEEESSCCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe------CCCEEEEEEecCcc
Confidence 45667889999999998883 333467999999998753321111 112345564 345677777664
Q ss_pred -----------cEEEEECCCCe----EEEEecC-ccccEEEEEeCCCCe--EEEEe---CCCeEEEEeCCCCe-eEEEee
Q 010816 221 -----------DARIWDVSLRK----CVICLSG-HTLAVTCVKWGGDGV--IYTGS---QDCTIKVWETTQGK-LIRELK 278 (500)
Q Consensus 221 -----------~v~iwd~~~~~----~~~~~~~-h~~~v~~~~~~~~~~--l~t~~---~dg~i~lwd~~~~~-~~~~~~ 278 (500)
.|++|++.+.. ++..... |...+..+.|++|+. +++.+ .++.|.++|+.++. ....+.
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~ 277 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ 277 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe
Confidence 39999997754 3443334 455577889999984 33333 23589999987663 233333
Q ss_pred cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC---CCeEEEEcCCCCCC-Cce
Q 010816 279 GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVSKQ-PKT 354 (500)
Q Consensus 279 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---d~~v~~wd~~~~~~-~~~ 354 (500)
.+....... ++++ ....++.+.. .+.|..+|+..... ...
T Consensus 278 ~~~~~~~~~-~~~~-----------------------------------g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~ 321 (693)
T 3iuj_A 278 GDLDADVSL-VDNK-----------------------------------GSTLYLLTNRDAPNRRLVTVDAANPGPAHWR 321 (693)
T ss_dssp CSSSSCEEE-EEEE-----------------------------------TTEEEEEECTTCTTCEEEEEETTSCCGGGCE
T ss_pred CCCCceEEE-Eecc-----------------------------------CCEEEEEECCCCCCCEEEEEeCCCCCccccE
Confidence 333222221 1111 0122333333 36788888765432 123
Q ss_pred eeecccCcEEEEEECCCCCEEEEEeCCC---cEEEEeCCCCceEEEEeC-CcccEEEEEeeeeeeecCCCCceeeeeccc
Q 010816 355 RMTGHQQLVNHVYFSPDGQWVASASFDK---SIKLWNGTTGKFVAVFRG-HVGPVYQIRFELIYCFRYPSNFYCVVDMSC 430 (500)
Q Consensus 355 ~~~~h~~~v~~l~~sp~g~~lasgs~Dg---~i~lwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (500)
.+..|...+. .|++++++|+....++ .|++||+..+.. ..+.. ..+.+
T Consensus 322 ~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~------------------------- 373 (693)
T 3iuj_A 322 DLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSV------------------------- 373 (693)
T ss_dssp EEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEE-------------------------
T ss_pred EEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceE-------------------------
Confidence 4556666555 8999998887666544 689999875432 22221 11111
Q ss_pred cceeeEEcCCCCEEEEEECC----CcEEEEECCCcc
Q 010816 431 CMSLYSWSADSRLLLSGSKD----STLKVWDIRTQK 462 (500)
Q Consensus 431 ~~~~~~~s~~~~~l~s~s~d----~~v~iwd~~~~~ 462 (500)
..+++++++..++....+ ++++.||+.+++
T Consensus 374 --~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 374 --SGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp --EECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred --EeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 112446777766555444 789999987765
No 222
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.11 E-value=1.8e-08 Score=95.96 Aligned_cols=262 Identities=12% Similarity=0.053 Sum_probs=158.4
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEE
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITG 198 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~ 198 (500)
++..++.++.++.+..+|..+++.+............... .+..++.++.++.|..+|..+|+........ ..+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~--~~~~~ 177 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLD--MPSLS 177 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC--C----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCC--CCcee
Confidence 4567888889999999999999887665433221111112 2457888889999999999998754321111 00000
Q ss_pred E--EeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcccc----------EEEEEeCCCCeEEEEeCCCeEEEE
Q 010816 199 I--SWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLA----------VTCVKWGGDGVIYTGSQDCTIKVW 266 (500)
Q Consensus 199 ~--~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~----------v~~~~~~~~~~l~t~~~dg~i~lw 266 (500)
. .-.|.. ....++.++.++.+..+|..+++.+......... +.......++.++.++.++.+..+
T Consensus 178 ~~~~~~~~~---~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 178 LRGESAPTT---AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp -CCCCCCEE---ETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred ecCCCCcEE---ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 0 001111 1246778888999999999999877655422100 000001125678888999999999
Q ss_pred eCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcC
Q 010816 267 ETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEP 346 (500)
Q Consensus 267 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~ 346 (500)
|..+|+.+....... ...+... ...+..++.++.+..+|.
T Consensus 255 d~~tG~~~w~~~~~~--~~~~~~~--------------------------------------~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 255 DLRSGQIMWKRELGS--VNDFIVD--------------------------------------GNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp ETTTCCEEEEECCCC--EEEEEEE--------------------------------------TTEEEEEETTCCEEEEET
T ss_pred ECCCCcEEeeccCCC--CCCceEE--------------------------------------CCEEEEEcCCCeEEEEEC
Confidence 999998776554221 1111111 246777888889999987
Q ss_pred CCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeee
Q 010816 347 AVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVV 426 (500)
Q Consensus 347 ~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~ 426 (500)
...+............+..... .+..|..++.+|.|.++|..+|+.+..++.....+...
T Consensus 295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~------------------ 354 (376)
T 3q7m_A 295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTE------------------ 354 (376)
T ss_dssp TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSC------------------
T ss_pred CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeC------------------
Confidence 6544322111011111111222 25678888999999999999999876655422221100
Q ss_pred eccccceeeEEcCCCCEEEEEECCCcEEEEE
Q 010816 427 DMSCCMSLYSWSADSRLLLSGSKDSTLKVWD 457 (500)
Q Consensus 427 ~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd 457 (500)
.. ..+..|+.++.+|.++.|+
T Consensus 355 --------~~--~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 355 --------PV--AADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp --------CE--EETTEEEEEBTTSCEEEEE
T ss_pred --------CE--EECCEEEEEeCCCEEEEEe
Confidence 01 1355778889999999886
No 223
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.08 E-value=1.1e-08 Score=95.97 Aligned_cols=231 Identities=16% Similarity=0.145 Sum_probs=136.5
Q ss_pred ccEEEEEEcCCCCeEEEEe--CCCcEEEEeCCCCceeEEe-------cCCCCCEEEEEEcCCCCEEEEEeC-----CCeE
Q 010816 109 EAVLSVAFSPDGRQLASGS--GDTTVRLWDLNTQTPMFKC-------TGHKNWVLCIAWSADGKHLVSGSK-----AGEL 174 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~--~d~~i~iwd~~~~~~~~~~-------~~h~~~v~~v~~s~~~~~l~s~~~-----d~~i 174 (500)
.....++++|+|+.+++.. .++.++||.+.+++ +..+ .+|-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5678999999999988864 23436666665433 2221 134568999999999876665443 5799
Q ss_pred EEEeCCCCCccccc-c----cCcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECCCCeEEEEecCccccEE-E
Q 010816 175 QCWDPQTGKPSGNP-L----SGHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLRKCVICLSGHTLAVT-C 245 (500)
Q Consensus 175 ~~wd~~~~~~~~~~-~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~~~~~~~~~~~h~~~v~-~ 245 (500)
.+||+.+++..... + ..+......+.+.+. ....+++.+ .++.|.+||+.+++....+.+|..... .
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~----~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~ 171 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI----HNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPED 171 (343)
T ss_dssp EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT----TTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCS
T ss_pred EEEECCCCeEEEEEECChhhcccccccceEEEecC----CCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccc
Confidence 99999888643211 1 112233456666531 223456655 678999999998887776655422110 0
Q ss_pred EEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 246 VKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 246 ~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
..+..++ .+.+.+.|+.++.|.. .+..++++++.
T Consensus 172 ~~~~~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg------------------------------- 206 (343)
T 2qe8_A 172 IDLVIDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAEN------------------------------- 206 (343)
T ss_dssp CCCEETTEECBEECTTSCEECCCC--------------CEEEEEECTTS-------------------------------
T ss_pred cceeECCEEEEeccCCCceeceec--------------ccceeEeccCC-------------------------------
Confidence 1222234 3445566777666531 13456666542
Q ss_pred cCCCCcEEEEeeCCC-eEEEEcCC---CCCCC------ceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816 325 KGNAPERLVSGSDDF-TMFLWEPA---VSKQP------KTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 325 ~~~~~~~~~s~s~d~-~v~~wd~~---~~~~~------~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
..++.+..++ .++.++.. ..... .....++......++++++|.++++...++.|.+||..+|+.
T Consensus 207 -----~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~ 281 (343)
T 2qe8_A 207 -----EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY 281 (343)
T ss_dssp -----CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred -----CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence 2344443333 44444321 00000 001123333456789999999999998999999999866654
No 224
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=9e-08 Score=88.21 Aligned_cols=154 Identities=10% Similarity=-0.018 Sum_probs=95.2
Q ss_pred cccEEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 108 TEAVLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 108 ~~~V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
........|+|+++ +++++..++.|..|+.. +. ...+..+...+..+.++++|+++++...++.|.+|+.. ++...
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 34566789999998 56677778999999984 33 33344456778999999999977766666889999985 54211
Q ss_pred cc--ccCc-ccceEEEEeeeeecCCCCceEEE----EeC-------------CCcEEEEECCCCeEEEEecCccccEEEE
Q 010816 187 NP--LSGH-KKWITGISWEPVHLNAPCRRFVS----ASK-------------DGDARIWDVSLRKCVICLSGHTLAVTCV 246 (500)
Q Consensus 187 ~~--~~~~-~~~v~~~~~~~~~~~~~~~~~~s----~s~-------------dg~v~iwd~~~~~~~~~~~~h~~~v~~~ 246 (500)
.. ..+. ...+..+.+.| ++..+++ |.. .+.|..+|..+++..... .......+
T Consensus 121 ~~~~~~~~~~~~~~~i~~d~-----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl 193 (305)
T 3dr2_A 121 LVGRYAGKRLNSPNDLIVAR-----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGL 193 (305)
T ss_dssp EECEETTEECSCCCCEEECT-----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEE
T ss_pred EEeccCCCccCCCCCEEECC-----CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcce
Confidence 00 0110 01233454443 4445554 332 245667776555543322 33345678
Q ss_pred EeCCCCe-EEEEeCC------CeEEEEeCCCC
Q 010816 247 KWGGDGV-IYTGSQD------CTIKVWETTQG 271 (500)
Q Consensus 247 ~~~~~~~-l~t~~~d------g~i~lwd~~~~ 271 (500)
+|++++. |+.+... +.|.+||+..+
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 8998874 6666554 67888876543
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=1.9e-10 Score=109.23 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=79.2
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc-cceE
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-KWIT 197 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~~v~ 197 (500)
++..+++++.|+.|..||..+++.+..+.. +.+.+..+..++..+++++.|+.|..||.++|+..... ..+. ..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~-~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL-PFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEEC-SCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee-eccCccccc
Confidence 577899999999999999999999887765 45555556677878888899999999999888754221 1111 1110
Q ss_pred EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeC-CCCeEEEEeCCCeEEEEeCCCCeeEEE
Q 010816 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWG-GDGVIYTGSQDCTIKVWETTQGKLIRE 276 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~t~~~dg~i~lwd~~~~~~~~~ 276 (500)
-.|.. .....+++++.|+.++.||..+++.+..+..+.. ..++ .++.+++++.|+.|+.||..+|+.+..
T Consensus 85 ---~sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~ 155 (369)
T 2hz6_A 85 ---ASPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRWN 155 (369)
T ss_dssp ---TCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred ---cCceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence 01110 0224566777888888888888887766554431 1122 245677788888888888887765543
No 226
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.04 E-value=6.7e-08 Score=89.07 Aligned_cols=231 Identities=16% Similarity=0.148 Sum_probs=137.5
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC-CCeEEEEeCCCC
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ-DCTIKVWETTQG 271 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~-dg~i~lwd~~~~ 271 (500)
.....+..|.|.. ...+++...++.|..|+.. +. ...+..+...+..+.++++|.++++.. ++.|.+||.. +
T Consensus 44 ~~~~egp~~~~~g----~~l~~~d~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g 116 (305)
T 3dr2_A 44 ATWSEGPAWWEAQ----RTLVWSDLVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-G 116 (305)
T ss_dssp CSSEEEEEEEGGG----TEEEEEETTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CcCccCCeEeCCC----CEEEEEECCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-C
Confidence 3455677787632 1256777788999999984 43 233444556688899999998877765 4789999975 5
Q ss_pred eeEEEeec-CC---ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE----ee-------
Q 010816 272 KLIRELKG-HG---HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS----GS------- 336 (500)
Q Consensus 272 ~~~~~~~~-~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s----~s------- 336 (500)
+....... .. ..+..+++.++.. ..++ |.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~i~~d~dG~------------------------------------l~~td~~~g~~~~~~~~ 160 (305)
T 3dr2_A 117 QAHLLVGRYAGKRLNSPNDLIVARDGA------------------------------------IWFTDPPFGLRKPSQGC 160 (305)
T ss_dssp CEEEEECEETTEECSCCCCEEECTTSC------------------------------------EEEECCSGGGSCGGGSC
T ss_pred CEEEEEeccCCCccCCCCCEEECCCCC------------------------------------EEEeCcCCCcccccccc
Confidence 53222111 11 1233444444432 2222 11
Q ss_pred ------CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceEEEEeCCccc
Q 010816 337 ------DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFD------KSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 337 ------~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~D------g~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
..+.|+.+|...... ..+. .....+.++|+|||+.|+.+... +.|++|++..+. +...+
T Consensus 161 ~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~----- 231 (305)
T 3dr2_A 161 PADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR----- 231 (305)
T ss_dssp CCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----
T ss_pred ccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----
Confidence 124577777543322 2222 34567889999999988777665 689999886554 11100
Q ss_pred EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCC
Q 010816 405 VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE 484 (500)
Q Consensus 405 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~ 484 (500)
+ +. ... ......+++.++|++.++. .+ .|.+|+.. ++.+..+..+. .+..++|+|+++
T Consensus 232 ---~-~~-----~~~---------~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~ 289 (305)
T 3dr2_A 232 ---H-FA-----SVP---------DGLPDGFCVDRGGWLWSSS-GT-GVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQ 289 (305)
T ss_dssp ---E-EE-----CCS---------SSCCCSEEECTTSCEEECC-SS-EEEEECTT-SCEEEEEECSS-CCCEEEECTTSC
T ss_pred ---E-EE-----ECC---------CCCCCeEEECCCCCEEEec-CC-cEEEECCC-CCEEEEEECCC-ceeEEEEeCCCC
Confidence 0 00 000 0011123568889855444 44 49999984 55555554443 578999999999
Q ss_pred EEEEEeCCCcEEE
Q 010816 485 KVASGGKDRVLKL 497 (500)
Q Consensus 485 ~l~s~~~D~~v~i 497 (500)
.|..++.++..++
T Consensus 290 ~L~it~~~~l~~~ 302 (305)
T 3dr2_A 290 RLFITGGPCLWML 302 (305)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEEEcCCeEEEE
Confidence 9998888776555
No 227
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=110.77 Aligned_cols=204 Identities=11% Similarity=0.025 Sum_probs=110.7
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~ 287 (500)
...++++++.|+.|+.||..+++.+..+.. ..+.+..+..++ .+++++.|+.|+.||..+|+.+.....+.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~-- 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV-- 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence 346788999999999999999998877765 333333333455 566678999999999988876654432210000
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEE
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVY 367 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~ 367 (500)
..+| .. .....+++++.|+.++.||....+.... +..+. ...
T Consensus 84 ~~sp--------------------------------~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~-~~~~~----~~~ 125 (369)
T 2hz6_A 84 QASP--------------------------------CR-SSDGILYMGKKQDIWYVIDLLTGEKQQT-LSSAF----ADS 125 (369)
T ss_dssp TTCS--------------------------------CC------CCCCEEEEEEEEECCC--------------------
T ss_pred ccCc--------------------------------eE-ecCCEEEEEeCCCEEEEEECCCCcEEEE-ecCCC----ccc
Confidence 0000 00 0123567788899999999876544322 22221 235
Q ss_pred ECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC---CEE
Q 010816 368 FSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS---RLL 444 (500)
Q Consensus 368 ~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~l 444 (500)
++|++..+++++.|+.|+.||..+|+.+..+..+. . . ..+++++. ..+
T Consensus 126 ~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-----~--------~----------------~~~~~~~~~~~~~v 176 (369)
T 2hz6_A 126 LSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-----Y--------A----------------ASLPEDDVDYKMSH 176 (369)
T ss_dssp -------EEEEEEEEEEECCCSSSSSCCCEEEEEE-----E--------C----------------CBCCCCCTTCCCCE
T ss_pred ccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-----c--------c----------------CccccCCccccceE
Confidence 67788899999999999999999998654433110 0 0 00112221 456
Q ss_pred EEEECCCcEEEEECCCccccccccCcccCEE-EEEEcCCCC
Q 010816 445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVF-AVDWSPDGE 484 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~dg~ 484 (500)
++++.||.|+.||.++++.+-...- ...+. ...++++|.
T Consensus 177 ~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~~~~~~~dg~ 216 (369)
T 2hz6_A 177 FVSNGDGLVVTVDSESGDVLWIQNY-ASPVVAFYVWQREGL 216 (369)
T ss_dssp EEEETSCEEEEECTTTCCEEEEEEC-SSCEEEEEECTTSSC
T ss_pred EEECCCCEEEEEECCCCcEEEEecC-CCceEEEEEecCCce
Confidence 7789999999999999887655442 23443 345566664
No 228
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.04 E-value=3.1e-07 Score=85.41 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=129.2
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-
Q 010816 111 VLSVAFSPDGR-QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP- 188 (500)
Q Consensus 111 V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~- 188 (500)
..+..|+|++. ++++...++.|..||..++... .+. ....+.++.|+++|+++++. . ..|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEEEee
Confidence 34678999855 5556667889999999876543 222 34679999999999877764 3 45999999877642111
Q ss_pred cc-C-cccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCe-EE-EEe
Q 010816 189 LS-G-HKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGV-IY-TGS 258 (500)
Q Consensus 189 ~~-~-~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-t~~ 258 (500)
.. + ....+..+.+.| +++.+++... .+.|..++ .++... +..+......++|++++. ++ +.+
T Consensus 127 ~~~~~~~~~~~~i~~d~-----~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~ 198 (326)
T 2ghs_A 127 LESDLPGNRSNDGRMHP-----SGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT 198 (326)
T ss_dssp SSTTCTTEEEEEEEECT-----TSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET
T ss_pred CCCCCCCCCCCCEEECC-----CCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC
Confidence 10 1 123456666654 3344444332 24455555 444332 222233456789999883 44 445
Q ss_pred CCCeEEEEeCC--CC-ee-----EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 259 QDCTIKVWETT--QG-KL-----IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 259 ~dg~i~lwd~~--~~-~~-----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
.++.|.+||+. +| .. ...+.........+++.++ +.
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~------------------------------------G~ 242 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE------------------------------------GH 242 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT------------------------------------SC
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC------------------------------------CC
Confidence 67899999985 55 32 1111111222233333222 23
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEEC-CCCCEEEEEeC
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFS-PDGQWVASASF 380 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~lasgs~ 380 (500)
..++...++.|..||+. ......+..+...+.+++|+ |+++.|..++.
T Consensus 243 lwva~~~~~~v~~~d~~--g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 243 IWNARWGEGAVDRYDTD--GNHIARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEEETTTEEEEECTT--CCEEEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred EEEEEeCCCEEEEECCC--CCEEEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 45555566889999873 22334444555679999998 88876655544
No 229
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.04 E-value=4.2e-08 Score=93.57 Aligned_cols=274 Identities=12% Similarity=-0.000 Sum_probs=163.5
Q ss_pred CCCCEEEEEeC-C----CeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEe----------CCCcEEE
Q 010816 160 ADGKHLVSGSK-A----GELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSAS----------KDGDARI 224 (500)
Q Consensus 160 ~~~~~l~s~~~-d----~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s----------~dg~v~i 224 (500)
++++.++.+.. + +.|.+.|..+++.......+. .+ .+.++| +++++..+. .++.|.+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~-~P--gia~Sp-----Dgk~lyVan~~~~~~~~G~~~~~Vsv 153 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF-LP--HPVAAE-----DGSFFAQASTVFERIARGKRTDYVEV 153 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS-SC--EEEECT-----TSSCEEEEEEEEEETTEEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC-CC--ceEECC-----CCCEEEEEeccccccccCCCCCEEEE
Confidence 45666655443 2 699999999887654433222 22 566655 445555554 4678999
Q ss_pred EECCCCeEEEEec-C-c-----cccEEEEEeCCCC-eEEEEeC--CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcce
Q 010816 225 WDVSLRKCVICLS-G-H-----TLAVTCVKWGGDG-VIYTGSQ--DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYA 294 (500)
Q Consensus 225 wd~~~~~~~~~~~-~-h-----~~~v~~~~~~~~~-~l~t~~~--dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 294 (500)
+|..+.+.+..+. + . ...-..+.+++|+ .++.+.. ++.|.+.|+.+++.+..+..... ....+.
T Consensus 154 iD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~-- 227 (426)
T 3c75_H 154 FDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPA-- 227 (426)
T ss_dssp ECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEE--
T ss_pred EECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccC--
Confidence 9999988776553 1 0 0112245788887 4666553 68899999999998887754321 111111
Q ss_pred eeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCcee----ee-cccCcEEEEEEC
Q 010816 295 LRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTR----MT-GHQQLVNHVYFS 369 (500)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~----~~-~h~~~v~~l~~s 369 (500)
....+++.+.||.+.+.+.... ..... +. +.......+.|+
T Consensus 228 ---------------------------------g~~~~v~~~~dG~~~~V~~~~~-~v~~~~~~~~~v~~~p~~~~~~~~ 273 (426)
T 3c75_H 228 ---------------------------------SPTVFYMNCRDGSLARVDFADG-ETKVTNTEVFHTEDELLINHPAFS 273 (426)
T ss_dssp ---------------------------------ETTEEEEEETTSSEEEEECCTT-CCEEEECCCCSCTTSCBCSCCEEC
T ss_pred ---------------------------------CCcEEEEEcCCCCEEEEECCCC-cEEEEeeeeeccCCCceeeEeeec
Confidence 0124555666777766665221 11100 00 001111235689
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE
Q 010816 370 PDGQWVASASFDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG 447 (500)
Q Consensus 370 p~g~~lasgs~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~ 447 (500)
+++..++..+..+.|.+.|...+.... .+.--. ...............++++|+++.++.+
T Consensus 274 ~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~-----------------~~~i~~g~~p~g~~~va~s~dg~rlyVa 336 (426)
T 3c75_H 274 LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALT-----------------EAERADDWRPGGWQQTAYHRQSDRIYLL 336 (426)
T ss_dssp TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSC-----------------TTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecc-----------------ccccccccccCCceeeEEcCCCCEEEEE
Confidence 998887777888999999986544221 110000 0000000000011113678998877766
Q ss_pred EC----------CCcEEEEECCCccccccccCcccCEEEEEEcCCCC-EEEEEe-CCCcEEEec
Q 010816 448 SK----------DSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGE-KVASGG-KDRVLKLWM 499 (500)
Q Consensus 448 s~----------d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~s~~-~D~~v~iW~ 499 (500)
.. ++.|-++|+.+.+.+..++.. ...+++.|+|||+ +++++. .++.|.+++
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred ecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEE
Confidence 42 357999999999998887643 2478999999999 888887 589998876
No 230
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.03 E-value=1.7e-08 Score=94.69 Aligned_cols=268 Identities=10% Similarity=-0.005 Sum_probs=155.8
Q ss_pred cEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEeCCCCCcccccccC-cc-----c
Q 010816 131 TVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS----------KAGELQCWDPQTGKPSGNPLSG-HK-----K 194 (500)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~----------~d~~i~~wd~~~~~~~~~~~~~-~~-----~ 194 (500)
+|.+.|..+.+.+..+..-..+ .+.++||+++++.+. .++.|.+||+.+++.......+ .. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7889999999988877654556 799999999998876 4789999999998765432111 00 1
Q ss_pred ceEEEEeeeeecCCCCceEEEEeC--CCcEEE--EECCCCeEEEEec-CccccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816 195 WITGISWEPVHLNAPCRRFVSASK--DGDARI--WDVSLRKCVICLS-GHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 195 ~v~~~~~~~~~~~~~~~~~~s~s~--dg~v~i--wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~ 269 (500)
.-..+.++ +++++++.+.. +..+.+ +|..+ +..+. +.. ..+.......+++.+.||.+.+.|+.
T Consensus 125 ~P~~ia~S-----pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 125 RVHIIGNC-----ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CTTSEEEC-----TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CcceEEEc-----CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 11234443 35667776654 456888 88866 22221 110 00111222345566778888888877
Q ss_pred C-----CeeEEE----eecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCe
Q 010816 270 Q-----GKLIRE----LKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFT 340 (500)
Q Consensus 270 ~-----~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~ 340 (500)
+ ++.... +.....+. . . .....++..+. +.
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~------------------------------------~~~~~~~~vs~-~~ 232 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-A------------------------------------NYPGMLVWAVA-SS 232 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-E------------------------------------TTTTEEEECBS-SC
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-c------------------------------------ccCCEEEEEcC-CE
Confidence 5 332210 00000000 0 0 01223444444 77
Q ss_pred EEEEcCCCCCCC-ceeee-------cc---cCcEEEEEECCCCCEEEEEeC---------CCcEEEEeCCCCceEEEEeC
Q 010816 341 MFLWEPAVSKQP-KTRMT-------GH---QQLVNHVYFSPDGQWVASASF---------DKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 341 v~~wd~~~~~~~-~~~~~-------~h---~~~v~~l~~sp~g~~lasgs~---------Dg~i~lwd~~~~~~~~~~~~ 400 (500)
+.+.|....... ...+. .+ ......++++||++.+..+.. ++.+.++|+.+++.+..+..
T Consensus 233 V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v 312 (368)
T 1mda_H 233 ILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN 312 (368)
T ss_dssp CEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE
T ss_pred EEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC
Confidence 877776432110 00000 00 011112689999987776533 23566999999988776543
Q ss_pred CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEE-CCCcEEEEECCCccccccccCcccCEEEEE
Q 010816 401 HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGS-KDSTLKVWDIRTQKLKQDLPGHADEVFAVD 478 (500)
Q Consensus 401 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~ 478 (500)
... .. .++++|||+ ++++.. .++.|.++|+.+++.++.++.... -+.++
T Consensus 313 g~~-p~---------------------------gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~ 363 (368)
T 1mda_H 313 GHD-SD---------------------------AIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLS 363 (368)
T ss_dssp EEE-EC---------------------------EEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEE
T ss_pred CCC-cc---------------------------eEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEE
Confidence 221 11 226799997 556666 599999999999999888875543 34555
Q ss_pred EcC
Q 010816 479 WSP 481 (500)
Q Consensus 479 ~s~ 481 (500)
+.+
T Consensus 364 ~~~ 366 (368)
T 1mda_H 364 VQN 366 (368)
T ss_dssp CCC
T ss_pred eec
Confidence 543
No 231
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.03 E-value=2.2e-08 Score=102.68 Aligned_cols=323 Identities=14% Similarity=0.069 Sum_probs=165.6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcc-c--------ce-EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCe
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK-K--------WI-TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRK 231 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~--------~v-~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~ 231 (500)
+..|+.++.++.|..+|..+|+.+-....... . .+ .++. ....+++.++.|+.+..+|..+++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a-------~~~~~v~v~~~dg~l~alD~~tG~ 149 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVA-------LWKGKVYVGAWDGRLIALDAATGK 149 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCE-------EETTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCce-------EECCEEEEEcCCCEEEEEECCCCC
Confidence 45677777788899999988875432111000 0 00 0111 123578888999999999999999
Q ss_pred EEEEecCc-c----ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccc
Q 010816 232 CVICLSGH-T----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAF 300 (500)
Q Consensus 232 ~~~~~~~h-~----~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 300 (500)
.+..+..+ . ..+.+.....++.++.++. ++.|+.+|..+|+.+..+.............+. ...+.
T Consensus 150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~--~~~g~- 226 (677)
T 1kb0_A 150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDES--MKRAA- 226 (677)
T ss_dssp EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHH--HHHHH-
T ss_pred EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccc--ccccc-
Confidence 88776644 1 1121111112456666654 799999999999988776532211000000000 00000
Q ss_pred cCCCCCCCCHHHHHHHHHH--hhhhh-cCCCCcEEEEeeCCC-------------------eEEEEcCCCCCCCceee-e
Q 010816 301 DHTGKQYSSPEEMKKAALE--RYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRM-T 357 (500)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~~~~~~~-~ 357 (500)
..+..........-. .+..+ .......++.++.++ .|..+|....+...... .
T Consensus 227 ----~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~ 302 (677)
T 1kb0_A 227 ----RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQET 302 (677)
T ss_dssp ----TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESS
T ss_pred ----ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecC
Confidence 000000000000000 00000 001123444444332 47777776554332221 1
Q ss_pred ccc-------CcEEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceEEEEeCCccc-EEEEEe--eeee--eecCCCCc
Q 010816 358 GHQ-------QLVNHVYFSPDG---QWVASASFDKSIKLWNGTTGKFVAVFRGHVGP-VYQIRF--ELIY--CFRYPSNF 422 (500)
Q Consensus 358 ~h~-------~~v~~l~~sp~g---~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~-v~~~~~--~~~~--~~~~~~~~ 422 (500)
.|. ....-+....+| ..++.++.+|.++++|..+|+.+..++....+ ...+.. ..+. ..++....
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 221 112223333477 68999999999999999999998766532211 111100 0000 00000000
Q ss_pred eeeeec---cccceeeEEcCCCCEEEEEECC-------------------------------------------CcEEEE
Q 010816 423 YCVVDM---SCCMSLYSWSADSRLLLSGSKD-------------------------------------------STLKVW 456 (500)
Q Consensus 423 ~~~~~~---~~~~~~~~~s~~~~~l~s~s~d-------------------------------------------~~v~iw 456 (500)
...... ...-...+++|++.++++...+ +.|..|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 000000 0000134678888888776432 779999
Q ss_pred ECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 457 DIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 457 d~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
|+.+++.+-..+ +...+++..+..++..++.++.|+.+++|+
T Consensus 463 D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 463 DPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp ETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred eCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence 999998765554 223344455667788999999999999987
No 232
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=4.2e-06 Score=87.96 Aligned_cols=311 Identities=10% Similarity=0.089 Sum_probs=184.1
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC-CCC-EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNW-VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~-v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
|.++...++|.+.+.. . +.+..||..++.......++ ... |.++...+++.+.+ ++.++.|..||..+++.....
T Consensus 133 i~~i~~d~~g~lwi~t-~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~ 209 (795)
T 4a2l_A 133 VNGIEEISPEQLLIST-P-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVI 209 (795)
T ss_dssp CCEEEEEETTEEEEEE-T-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC
T ss_pred EEEEEECCCCCEEEEE-C-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEec
Confidence 8888888888766544 3 45888997665321110111 123 88888877776554 566556888998776532211
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEeCCCCeEEEEeCCC
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYTGSQDC 261 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~t~~~dg 261 (500)
.......|.++...+ ...+..|+.++-+..||..+++....... ....|.++....++.|..|+.+
T Consensus 210 ~~~~~~~i~~i~~d~------~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~- 282 (795)
T 4a2l_A 210 PILGTKQIQAILQQS------PTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN- 282 (795)
T ss_dssp ----CCCEEEEEEEE------TTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-
T ss_pred CCCCCCeeEEEEEcC------CCCEEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-
Confidence 111233455554332 13455566555688999887665433222 1356999999989999988876
Q ss_pred eEEEEeCCCCeeEEEeec-------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE
Q 010816 262 TIKVWETTQGKLIRELKG-------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS 334 (500)
Q Consensus 262 ~i~lwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 334 (500)
-|.+||..+++....... ....|.++...++ ..+..
T Consensus 283 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~-------------------------------------g~lWi 325 (795)
T 4a2l_A 283 DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ-------------------------------------GGMWL 325 (795)
T ss_dssp CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT-------------------------------------SCEEE
T ss_pred hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC-------------------------------------cCEEE
Confidence 688899877654432211 1233555443322 24667
Q ss_pred eeCCCeEEEEcCCCCCCCceee-----ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC--------
Q 010816 335 GSDDFTMFLWEPAVSKQPKTRM-----TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH-------- 401 (500)
Q Consensus 335 ~s~d~~v~~wd~~~~~~~~~~~-----~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h-------- 401 (500)
|+.++-|..++.....-..... .-....|.++...++|.+- .|+.++-|..||..+++........
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lW-iGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLW-IGTNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEE-EEESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEE-EEECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 7777778888754321100000 0123569999999988744 5777878999998877653321110
Q ss_pred cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc----CcccCEEEE
Q 010816 402 VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP----GHADEVFAV 477 (500)
Q Consensus 402 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~----~h~~~V~~l 477 (500)
...|.++ ...++|++|..|..++-+.+||..+++...... .....|.++
T Consensus 405 ~~~v~~i---------------------------~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i 457 (795)
T 4a2l_A 405 SNNIKAV---------------------------YVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAI 457 (795)
T ss_dssp CSCEEEE---------------------------EEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEE
T ss_pred CccEEEE---------------------------EEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEE
Confidence 1222222 335677756677887779999988765432211 134578999
Q ss_pred EEcCCCCEEEEEeCCCcEEEe
Q 010816 478 DWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 478 ~~s~dg~~l~s~~~D~~v~iW 498 (500)
...++|...+... +| |.+|
T Consensus 458 ~~d~~g~lwigt~-~G-l~~~ 476 (795)
T 4a2l_A 458 LPDGEGNLWLGTL-SA-LVRF 476 (795)
T ss_dssp EECSSSCEEEEES-SC-EEEE
T ss_pred EECCCCCEEEEec-Cc-eeEE
Confidence 9888887555443 44 4444
No 233
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.96 E-value=9.4e-06 Score=85.29 Aligned_cols=311 Identities=11% Similarity=0.124 Sum_probs=184.9
Q ss_pred EEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816 111 VLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK-CTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 189 (500)
|.++...+++.+.+ |..++.+..||..++..... ...+...|.++...+++.+.+ |+.++-+.+||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 88898888887655 55555688899876543221 112346788888877776554 4545458889987654321111
Q ss_pred c------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC-------ccccEEEEEeCCCCeEEE
Q 010816 190 S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG-------HTLAVTCVKWGGDGVIYT 256 (500)
Q Consensus 190 ~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~l~t 256 (500)
. -....|.++...+ ...+-.|+.+ -+.+||..+++....... ....|.++....+|.|..
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~------~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi 325 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDS------QNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL 325 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECT------TSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE
T ss_pred CCCCccccCCCeEEEEEEcC------CCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE
Confidence 0 1123466654322 2345566665 588899887765443211 235699999999999999
Q ss_pred EeCCCeEEEEeCCCCeeEEEeec------CCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCc
Q 010816 257 GSQDCTIKVWETTQGKLIRELKG------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPE 330 (500)
Q Consensus 257 ~~~dg~i~lwd~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (500)
|+.++-|..|+..++........ ....|.++.... ..
T Consensus 326 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~-------------------------------------~g 368 (795)
T 4a2l_A 326 GTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK-------------------------------------DK 368 (795)
T ss_dssp EESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT-------------------------------------TS
T ss_pred EECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC-------------------------------------CC
Confidence 99999999998765543221110 122344444322 22
Q ss_pred EEEEeeCCCeEEEEcCCCCCCCceeee-------cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC---
Q 010816 331 RLVSGSDDFTMFLWEPAVSKQPKTRMT-------GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG--- 400 (500)
Q Consensus 331 ~~~s~s~d~~v~~wd~~~~~~~~~~~~-------~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~--- 400 (500)
.+..|+.++-+..|+............ -....|.++...++|++|..|+.++-|..||..+++.......
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~ 448 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQ 448 (795)
T ss_dssp CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSC
T ss_pred CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCC
Confidence 466777777788888653321110000 1235699999999998666778878899999988765332110
Q ss_pred -CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc------CcccC
Q 010816 401 -HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP------GHADE 473 (500)
Q Consensus 401 -h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~------~h~~~ 473 (500)
....|.++ ...++|.+.+.. .+ -+.+||..+++...... -....
T Consensus 449 l~~~~v~~i---------------------------~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 449 LVNENVYAI---------------------------LPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQ 499 (795)
T ss_dssp CSCSCEEEE---------------------------EECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCC
T ss_pred cCCCeeEEE---------------------------EECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCce
Confidence 11223332 235567655544 44 48889987765432211 12357
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 474 VFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 474 V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
|.++...++|+..+.+. .| |..|
T Consensus 500 i~~i~~d~~g~lWigt~-~G-l~~~ 522 (795)
T 4a2l_A 500 ITTLFRDSHKRLWIGGE-EG-LSVF 522 (795)
T ss_dssp EEEEEECTTCCEEEEES-SC-EEEE
T ss_pred EEEEEECCCCCEEEEeC-Cc-eEEE
Confidence 89999998887655444 45 4444
No 234
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.95 E-value=9.7e-08 Score=98.07 Aligned_cols=325 Identities=11% Similarity=0.046 Sum_probs=164.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcccce---E---EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI---T---GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v---~---~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 235 (500)
+..|+.++.++.|..+|..+|+.+-.......... . .+.-.|. ....+++.++.|+.+..+|..+++.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVA---VWKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccE---EECCEEEEEccCCEEEEEECCCCCEeee
Confidence 55777788889999999998875432111000000 0 0000010 1235788889999999999999998766
Q ss_pred ecCc--c---ccEEEEEeCCCCeEEEEe------CCCeEEEEeCCCCeeEEEeecCC-ceEEEEEecCcceeeeccccCC
Q 010816 236 LSGH--T---LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKGHG-HWVNSLALSTEYALRTGAFDHT 303 (500)
Q Consensus 236 ~~~h--~---~~v~~~~~~~~~~l~t~~------~dg~i~lwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~ 303 (500)
+... . ..+.+.....++.++.++ .++.|+.||..+|+.+..+.... .+... +... .+..+.....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~--~~~~-~~~~~~~~~~ 223 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLP--PEGK-GMEIAAKTWF 223 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC--CCSH-HHHHHHTTCC
T ss_pred ecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccc--cccc-cccccccccC
Confidence 5432 1 111110000156666654 37899999999999887654211 00000 0000 0000000000
Q ss_pred CCCCCCHHHHHHHH-H--Hhhhhh-cCCCCcEEEEeeCCC-------------------eEEEEcCCCCCCCceeee-cc
Q 010816 304 GKQYSSPEEMKKAA-L--ERYNKI-KGNAPERLVSGSDDF-------------------TMFLWEPAVSKQPKTRMT-GH 359 (500)
Q Consensus 304 ~~~~~~~~~~~~~~-~--~~~~~~-~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~~~~~~~~-~h 359 (500)
+.. .... - ..+... .......++.++.++ .|..+|....+....... .|
T Consensus 224 g~~-------w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~ 296 (689)
T 1yiq_A 224 GDA-------YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG 296 (689)
T ss_dssp SST-------HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT
T ss_pred Cce-------eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc
Confidence 000 0000 0 000000 001124455555554 378888766543322211 12
Q ss_pred c-------CcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCceEEEEeCCc-ccEEEEEeee---ee--eec--CCCC
Q 010816 360 Q-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHV-GPVYQIRFEL---IY--CFR--YPSN 421 (500)
Q Consensus 360 ~-------~~v~~l~~sp~g~---~lasgs~Dg~i~lwd~~~~~~~~~~~~h~-~~v~~~~~~~---~~--~~~--~~~~ 421 (500)
. ..........+|+ .++.++.+|.++++|..+|+++...+-.. .....+.... +. ..+ ++..
T Consensus 297 d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~ 376 (689)
T 1yiq_A 297 DAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNG 376 (689)
T ss_dssp CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSS
T ss_pred ccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCC
Confidence 1 1122222223565 78899999999999999999876544221 1111111000 00 000 0000
Q ss_pred c-eeeeec---cccceeeEEcCCCCEEEEEEC---------------------------------------------CCc
Q 010816 422 F-YCVVDM---SCCMSLYSWSADSRLLLSGSK---------------------------------------------DST 452 (500)
Q Consensus 422 ~-~~~~~~---~~~~~~~~~s~~~~~l~s~s~---------------------------------------------d~~ 452 (500)
. ...... ...-...+++|+..++++... +|.
T Consensus 377 ~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~ 456 (689)
T 1yiq_A 377 KRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGK 456 (689)
T ss_dssp SCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEE
T ss_pred CeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCccee
Confidence 0 000000 000112467888777776532 377
Q ss_pred EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEecC
Q 010816 453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWMG 500 (500)
Q Consensus 453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~~ 500 (500)
++.||+.+++.+-..+.+. .+..-.+...+..++.++.|+.++.|+.
T Consensus 457 l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 457 LIAWDPVKQQAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp EEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred EEEEECCCCCeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEEC
Confidence 9999999998876655443 2333355667889999999999999973
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.94 E-value=1.2e-07 Score=97.19 Aligned_cols=314 Identities=13% Similarity=0.112 Sum_probs=173.1
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC----------E-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW----------V-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP 188 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~----------v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 188 (500)
+..|+.++.++.|.-+|..+++.+......... + ..+.+ .+..|+.++.|+.|..+|..+|+..-..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 556777788899999999999988776432210 0 11222 3567888899999999999999865322
Q ss_pred ccCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEecCc---cc------------------
Q 010816 189 LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLSGH---TL------------------ 241 (500)
Q Consensus 189 ~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~~h---~~------------------ 241 (500)
..........+.-.|.- ...+++.+.. ++.|..+|..+++.+..+... ..
T Consensus 144 ~~~~~~~~~~~~~~P~v---~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV---VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp ECSCTTSSCBCCSCCEE---ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred ccCCCCCcceecCCCEE---ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 11110000011111211 1234555543 589999999999988766421 00
Q ss_pred ----------cEEEEEeCC-CCeEEEEeCCC-------------------eEEEEeCCCCeeEEEeecCCceEEEEEecC
Q 010816 242 ----------AVTCVKWGG-DGVIYTGSQDC-------------------TIKVWETTQGKLIRELKGHGHWVNSLALST 291 (500)
Q Consensus 242 ----------~v~~~~~~~-~~~l~t~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~ 291 (500)
....+++++ .+.++.++.++ .|.-+|..+|+.+..++...+.........
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 001245554 35777777665 489999999998877654211110000000
Q ss_pred cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecc----------c-
Q 010816 292 EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGH----------Q- 360 (500)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h----------~- 360 (500)
...+.... +.+.....++.++.+|.++++|....+......... .
T Consensus 301 ~~~~~d~~------------------------~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g 356 (668)
T 1kv9_A 301 QITLAELN------------------------IDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG 356 (668)
T ss_dssp CEEEEEEE------------------------ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred CcEEEEec------------------------cCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccC
Confidence 00000000 000001247788889999999876544221000000 0
Q ss_pred Cc------------------------EEEEEECCCCCEEEEE------------------------------------eC
Q 010816 361 QL------------------------VNHVYFSPDGQWVASA------------------------------------SF 380 (500)
Q Consensus 361 ~~------------------------v~~l~~sp~g~~lasg------------------------------------s~ 380 (500)
.. -..++++|+..++... ..
T Consensus 357 ~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~ 436 (668)
T 1kv9_A 357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV 436 (668)
T ss_dssp CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred CccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCc
Confidence 00 0126777876655432 13
Q ss_pred CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 381 DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
+|.|+.||+.+|+.+-..+.+... . .......+.+++.++.|+.++.||.++
T Consensus 437 ~g~l~A~D~~tG~~~W~~~~~~~~-~---------------------------~~~~~t~gg~vf~g~~dg~l~a~d~~t 488 (668)
T 1kv9_A 437 SGALLAWDPVKQKAAWKVPYPTHW-N---------------------------GGTLSTAGNLVFQGTAAGQMHAYSADK 488 (668)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSC-C---------------------------CCEEEETTTEEEEECTTSEEEEEETTT
T ss_pred cceEEEEeCCCCcEEEEccCCCCC-c---------------------------CceeEeCCCEEEEECCcccchhhhhhc
Confidence 478999999998876544322110 0 002245678888999999999999999
Q ss_pred ccccccccCcccCE-EEEEEcCCCC-EEEEEe
Q 010816 461 QKLKQDLPGHADEV-FAVDWSPDGE-KVASGG 490 (500)
Q Consensus 461 ~~~~~~~~~h~~~V-~~l~~s~dg~-~l~s~~ 490 (500)
++.+..+....+.. .-+.+..+|+ +++.++
T Consensus 489 G~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 489 GEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 99876654332110 1223345665 444443
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.88 E-value=1.3e-07 Score=88.71 Aligned_cols=238 Identities=12% Similarity=0.028 Sum_probs=142.7
Q ss_pred EEEEcCCCCeEEEEe----------CCCcEEEEeCCCCceeEEecCC-------CCCEEEEEEcCCCCEEEEEeC--CCe
Q 010816 113 SVAFSPDGRQLASGS----------GDTTVRLWDLNTQTPMFKCTGH-------KNWVLCIAWSADGKHLVSGSK--AGE 173 (500)
Q Consensus 113 ~~~~sp~~~~lat~~----------~d~~i~iwd~~~~~~~~~~~~h-------~~~v~~v~~s~~~~~l~s~~~--d~~ 173 (500)
.+.|+||+++++.+. .+++|.+||..+.+.+..+..+ ......+.|+|||++|+.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999998886 3789999999999988776432 123557899999999998864 467
Q ss_pred EEE--EeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC-----CeEEEE----ecCcccc
Q 010816 174 LQC--WDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL-----RKCVIC----LSGHTLA 242 (500)
Q Consensus 174 i~~--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~-----~~~~~~----~~~h~~~ 242 (500)
+.+ +|+.+ ....-.+.. ....|. ....+++.+.|+.+.+.|+.+ ++.... +.-...+
T Consensus 149 v~V~~iD~~t---v~~i~v~~~-----~~~~p~----g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P 216 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASC-----FHIHPG----AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA 216 (368)
T ss_dssp EEEEETTTEE---EEEEECSSC-----CCCEEE----ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred EEEEEEchhh---ceEEECCCc-----eEEccC----CCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence 888 99866 111100000 111121 123566777888888888876 332210 1001123
Q ss_pred EEEEEeCCCCeEEEEeCCCeEEEEeCCCCe--eEEEeecCC------ce----EEEEEecCcceeeeccccCCCCCCCCH
Q 010816 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGK--LIRELKGHG------HW----VNSLALSTEYALRTGAFDHTGKQYSSP 310 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~--~~~~~~~~~------~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (500)
. .+..++.++..+. +.+.+.|...+. .+..+.... .+ ...++++++
T Consensus 217 ~---~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d------------------ 274 (368)
T 1mda_H 217 A---QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN------------------ 274 (368)
T ss_dssp E---EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT------------------
T ss_pred c---ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC------------------
Confidence 2 2444455666666 889999986432 222111000 00 000222222
Q ss_pred HHHHHHHHHhhhhhcCCCCcEEEEe-e---C-----CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCC-EEEEEe-
Q 010816 311 EEMKKAALERYNKIKGNAPERLVSG-S---D-----DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQ-WVASAS- 379 (500)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~s~-s---~-----d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~-~lasgs- 379 (500)
+.+++.+ . . ++.+.++|....+.......+. ....++|+|||+ ++++..
T Consensus 275 ------------------g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~ 334 (368)
T 1mda_H 275 ------------------TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSA 334 (368)
T ss_dssp ------------------TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEET
T ss_pred ------------------CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccC
Confidence 2234332 2 1 2355699987654332222222 478899999997 566666
Q ss_pred CCCcEEEEeCCCCceEEEEeCCccc
Q 010816 380 FDKSIKLWNGTTGKFVAVFRGHVGP 404 (500)
Q Consensus 380 ~Dg~i~lwd~~~~~~~~~~~~h~~~ 404 (500)
.++.|.++|+.+++.+.+++....+
T Consensus 335 ~~~~VsVID~~t~kvv~~I~vg~~P 359 (368)
T 1mda_H 335 GTEVLDIYDAASDQDQSSVELDKGP 359 (368)
T ss_dssp TTTEEEEEESSSCEEEEECCCCSCC
T ss_pred CCCeEEEEECCCCcEEEEEECCCCC
Confidence 5999999999999999887755443
No 237
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.80 E-value=1.6e-07 Score=87.40 Aligned_cols=266 Identities=14% Similarity=0.068 Sum_probs=149.5
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~ 187 (500)
...+.++.+.+++.+.+ ++.+ +..+|. +++.+..............+. +..|..++.++.|..+|.. ++....
T Consensus 59 ~~~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~ 131 (330)
T 3hxj_A 59 EIIECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWR 131 (330)
T ss_dssp GEEEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEE
T ss_pred CCcccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEE
Confidence 34456777777776444 3333 888886 444333222222222222232 4567788889999999987 654321
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEe
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWE 267 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd 267 (500)
.......+.++.. .....+..++.++.+..+|.. ++....+......+.++....++.++.++ +.|..+|
T Consensus 132 -~~~~~~~~~~~~~------~~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d 201 (330)
T 3hxj_A 132 -FKTKKAIYATPIV------SEDGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS--DKVYAIN 201 (330)
T ss_dssp -EECSSCCCSCCEE------CTTSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES--SSEEEEC
T ss_pred -EcCCCceeeeeEE------cCCCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe--CEEEEEC
Confidence 1111111222211 113457778888999999998 77665555444556666676778888877 8899999
Q ss_pred CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
.+++...........+.++...+ ...+..++.++.+..+|..
T Consensus 202 -~~g~~~~~~~~~~~~~~~~~~~~-------------------------------------~g~l~v~t~~~gl~~~~~~ 243 (330)
T 3hxj_A 202 -PDGTEKWNFYAGYWTVTRPAISE-------------------------------------DGTIYVTSLDGHLYAINPD 243 (330)
T ss_dssp -TTSCEEEEECCSSCCCSCCEECT-------------------------------------TSCEEEEETTTEEEEECTT
T ss_pred -CCCcEEEEEccCCcceeceEECC-------------------------------------CCeEEEEcCCCeEEEECCC
Confidence 77776655443333233332221 1246667777888888742
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeee
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVD 427 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~ 427 (500)
. . ...........+.++.+.+++. |..++.+|.|..+|. +++.+..+......+
T Consensus 244 g-~-~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~---------------------- 297 (330)
T 3hxj_A 244 G-T-EKWRFKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETGSWII---------------------- 297 (330)
T ss_dssp S-C-EEEEEECSSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECSSCCC----------------------
T ss_pred C-C-EeEEeeCCCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcCCccc----------------------
Confidence 2 1 1122222222333455665664 666778888999996 676654443211111
Q ss_pred ccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 428 MSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 428 ~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
..+...++|+ |..|+.+|.+++...+.
T Consensus 298 -----~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 298 -----ATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -----SCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred -----cceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 1112345665 55688999999987654
No 238
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.66 E-value=0.00022 Score=74.73 Aligned_cols=309 Identities=13% Similarity=0.084 Sum_probs=175.9
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
..|.++...+++.+.+ |..++.+..||..++....-.. -....|.++...++|.+.+. +.+ -+.+||..+
T Consensus 163 ~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~~-Gl~~~d~~~ 239 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYI-GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TSK-GLALFNANT 239 (781)
T ss_dssp CCEEEEEEEETTEEEE-EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEE-ETT-EEEEEETTT
T ss_pred cceEEEEECCCCCEEE-EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eCC-cHheECCCC
Confidence 4688888888887655 4555568889887654321100 11356999998888876654 444 688999876
Q ss_pred CCccccccc------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec--------------Cccc
Q 010816 182 GKPSGNPLS------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS--------------GHTL 241 (500)
Q Consensus 182 ~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~--------------~h~~ 241 (500)
++....... -....|.++... ....+-.|+..+-|.++|..++....... -...
T Consensus 240 ~~~~~~~~~~~~~~~l~~~~i~~i~~d------~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~ 313 (781)
T 3v9f_A 240 ETFTNFHNNPGNIHGALSSYIFSIKQL------KDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNA 313 (781)
T ss_dssp TEEEC-----------CCCCEEEEEEC------TTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSS
T ss_pred CcEEEEEcCCCccccccCceEEEEEEC------CCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCC
Confidence 543211110 012335554432 22356667775678888887654322111 1235
Q ss_pred cEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeec---------CCceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 242 AVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKG---------HGHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 242 ~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
.|.++....++.|..|+.++-|..++..++........ ....|.++...+
T Consensus 314 ~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--------------------- 372 (781)
T 3v9f_A 314 SARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG--------------------- 372 (781)
T ss_dssp CEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT---------------------
T ss_pred eEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC---------------------
Confidence 68999998899999999888899998776543221110 112344444332
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce--eeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCC
Q 010816 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT--RMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGT 390 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~--~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~ 390 (500)
...+..|+.++-+..++......... ........|.++...++|.+.+ |+.++-+..+|..
T Consensus 373 ----------------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 373 ----------------QGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp ----------------TSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred ----------------CCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 12466677666688887542110000 0012345699999988887555 6777779999988
Q ss_pred CCceEEEEe--CCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCcccccccc
Q 010816 391 TGKFVAVFR--GHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLP 468 (500)
Q Consensus 391 ~~~~~~~~~--~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~ 468 (500)
+++...... .....|.++ ...++|.+.+ |.. +-+.+||..+++......
T Consensus 436 ~~~~~~~~~~~~~~~~v~~i---------------------------~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 436 LKKFQIIELEKNELLDVRVF---------------------------YEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp SCEEEECCSTTTCCCCEEEE---------------------------EECTTSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred CCcEEEeccCCCCCCeEEEE---------------------------EECCCCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence 775432111 012233333 2245555444 444 458889987765432211
Q ss_pred C-----cccCEEEEEEcCCCCEEEEEeCCC
Q 010816 469 G-----HADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 469 ~-----h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
. ....|.++...++|...+.....|
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G 516 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG 516 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC
Confidence 1 135788999988887655444345
No 239
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.65 E-value=0.00024 Score=74.33 Aligned_cols=312 Identities=13% Similarity=0.075 Sum_probs=176.7
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec-------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT-------GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQT 181 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~-------~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~ 181 (500)
..|.++...+++.+.+.. .+ .+.+||..++....-.. -....|.++...++|. |..|+..+-|.++|..+
T Consensus 211 ~~i~~i~~d~~g~lwigt-~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~ 287 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-SK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQ 287 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-TT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTC
T ss_pred CceeEEEEcCCCCEEEEe-CC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCC
Confidence 569999999988866543 44 68889987654221110 1245699999888875 44556656688888876
Q ss_pred CCcccccc-------------cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec---------Cc
Q 010816 182 GKPSGNPL-------------SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS---------GH 239 (500)
Q Consensus 182 ~~~~~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~---------~h 239 (500)
++...... .-....|.++...+ ...+-.|+.++-|..++........... -.
T Consensus 288 ~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~------~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~ 361 (781)
T 3v9f_A 288 NQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDS------FNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLS 361 (781)
T ss_dssp C---------CEEECBCSSTTSBSSSCEEEEEECS------SCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCS
T ss_pred CeeeeeeccccccccCCCCCCCCCCCeEEEEEEeC------CCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCC
Confidence 54321100 01123455544322 2356667777788888876544322110 12
Q ss_pred cccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEe---ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHH
Q 010816 240 TLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIREL---KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKA 316 (500)
Q Consensus 240 ~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (500)
...|.++....++.|..|+.++-|..||..++...... ......|.++...+
T Consensus 362 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~------------------------- 416 (781)
T 3v9f_A 362 NKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS------------------------- 416 (781)
T ss_dssp SSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-------------------------
T ss_pred CcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-------------------------
Confidence 35689998888899999998888999997654322110 01122344443322
Q ss_pred HHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee---cccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 317 ALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 317 ~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~---~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
...+..|+.++-+..++..... ..... .....|.++...++|.+.+. +. +-|..||..+++
T Consensus 417 ------------~g~lWigt~~~Gl~~~~~~~~~--~~~~~~~~~~~~~v~~i~~d~~g~lwig-t~-~Gl~~~~~~~~~ 480 (781)
T 3v9f_A 417 ------------EGNLWFGTYLGNISYYNTRLKK--FQIIELEKNELLDVRVFYEDKNKKIWIG-TH-AGVFVIDLASKK 480 (781)
T ss_dssp ------------TSCEEEEETTEEEEEECSSSCE--EEECCSTTTCCCCEEEEEECTTSEEEEE-ET-TEEEEEESSSSS
T ss_pred ------------CCCEEEEeccCCEEEEcCCCCc--EEEeccCCCCCCeEEEEEECCCCCEEEE-EC-CceEEEeCCCCe
Confidence 1245667766778888764321 11111 12356999999988875554 44 568899988776
Q ss_pred eEEEEeCC-----cccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccc-
Q 010816 394 FVAVFRGH-----VGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDL- 467 (500)
Q Consensus 394 ~~~~~~~h-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~- 467 (500)
........ ...+.++ ...++|.+.+ |..++-+..||..+++...-.
T Consensus 481 ~~~~~~~~~~~~~~~~i~~i---------------------------~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~ 532 (781)
T 3v9f_A 481 VIHHYDTSNSQLLENFVRSI---------------------------AQDSEGRFWI-GTFGGGVGIYTPDMQLVRKFNQ 532 (781)
T ss_dssp CCEEECTTTSSCSCSCEEEE---------------------------EECTTCCEEE-EESSSCEEEECTTCCEEEEECT
T ss_pred EEecccCcccccccceeEEE---------------------------EEcCCCCEEE-EEcCCCEEEEeCCCCeEEEccC
Confidence 53322111 1222222 3356676555 444334777887665432211
Q ss_pred -cC-cccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 468 -PG-HADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 468 -~~-h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.+ ....|.++...++|...++.. +|.|..|+
T Consensus 533 ~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d 565 (781)
T 3v9f_A 533 YEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPS 565 (781)
T ss_dssp TTTCSCSCEEEEEECTTSCEEEEET-TEEEEESC
T ss_pred CCCCCCCeeEEEEECCCCCEEEEEC-CCceEEEC
Confidence 11 235688999888887555443 66535543
No 240
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=2.5e-05 Score=78.22 Aligned_cols=114 Identities=13% Similarity=0.105 Sum_probs=69.3
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCceeEEecCCCCC-----------EEEEEEcCCCCE----EEEEeCCCeEEEEeCCCC
Q 010816 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKNW-----------VLCIAWSADGKH----LVSGSKAGELQCWDPQTG 182 (500)
Q Consensus 120 ~~~lat~~~-d~~i~iwd~-~~~~~~~~~~~h~~~-----------v~~v~~s~~~~~----l~s~~~d~~i~~wd~~~~ 182 (500)
+..|+.++. ++.|.-+|. .+++.+......... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 455666666 888999999 888887765432110 122455444445 888899999999999999
Q ss_pred Cccccc-ccCcccceEEEEeeeeecCCCCceEEEEe------CCCcEEEEECCCCeEEEEec
Q 010816 183 KPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS------KDGDARIWDVSLRKCVICLS 237 (500)
Q Consensus 183 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s------~dg~v~iwd~~~~~~~~~~~ 237 (500)
+..-.. ...+... ..+.-.|.-. ..+++.++ .++.|+-+|.++++.+..+.
T Consensus 142 ~~~W~~~~~~~~~~-~~~~ssP~v~---~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~ 199 (599)
T 1w6s_A 142 ETVWKVENSDIKVG-STLTIAPYVV---KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (599)
T ss_dssp CEEEEEECCCGGGT-CBCCSCCEEE---TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CEEEeecCCCCCcc-ceeecCCEEE---CCEEEEEecccccCCCCeEEEEECCCCcEEEEEc
Confidence 864321 1111100 0111112111 13455554 38999999999999876554
No 241
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.59 E-value=4.3e-06 Score=85.54 Aligned_cols=313 Identities=14% Similarity=0.112 Sum_probs=157.4
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcccccccCcccce------EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEE
Q 010816 162 GKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWI------TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVIC 235 (500)
Q Consensus 162 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~ 235 (500)
+..|+.++.++.|..+|..+|+.+-.......... ..+.-.+. ....+++.++.|+.|..+|..+++.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVA---LWGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCE---EEBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceE---EECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 45677777888999999988875432111000000 00000000 1235788888999999999999998776
Q ss_pred ecCcc----ccEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCC
Q 010816 236 LSGHT----LAVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGK 305 (500)
Q Consensus 236 ~~~h~----~~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 305 (500)
+.... ..+.+...-.++.++.+.. ++.|..+|..+|+.+..+..... .+...
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~-------~p~~~----------- 204 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPG-------DPALP----------- 204 (668)
T ss_dssp EECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCC-------CTTSC-----------
T ss_pred eccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCC-------CCCcc-----------
Confidence 54321 1111100001456666543 58999999999998877642110 00000
Q ss_pred CCCCHHHHHHHHHHhh---------------hh-hcCCCCcEEEEeeCCC-------------------eEEEEcCCCCC
Q 010816 306 QYSSPEEMKKAALERY---------------NK-IKGNAPERLVSGSDDF-------------------TMFLWEPAVSK 350 (500)
Q Consensus 306 ~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~~~s~s~d~-------------------~v~~wd~~~~~ 350 (500)
.... .. ......+ .. ........++.++.++ .|..+|....+
T Consensus 205 -~~~~-~~-~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~ 281 (668)
T 1kv9_A 205 -YEHP-EL-REAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK 281 (668)
T ss_dssp -CSSH-HH-HHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred -cccc-cc-ccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc
Confidence 0000 00 0000000 00 0001123455555444 37777776554
Q ss_pred CCceeee-ccc-------CcEEEEEECCCCC---EEEEEeCCCcEEEEeCCCCceEEEEeCCcc-cEEEEEeeeeeeecC
Q 010816 351 QPKTRMT-GHQ-------QLVNHVYFSPDGQ---WVASASFDKSIKLWNGTTGKFVAVFRGHVG-PVYQIRFELIYCFRY 418 (500)
Q Consensus 351 ~~~~~~~-~h~-------~~v~~l~~sp~g~---~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~ 418 (500)
....... .|. .......+..+|+ .++.++.+|.++++|..+|+.+...+.... ....+......-...
T Consensus 282 ~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~ 361 (668)
T 1kv9_A 282 LAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA 361 (668)
T ss_dssp EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred eeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcccc
Confidence 3322221 122 1222223334665 688999999999999999998865543321 111110000000000
Q ss_pred CCCce---eeeecccc-----ceeeEEcCCCCEEEEE------------------------------------ECCCcEE
Q 010816 419 PSNFY---CVVDMSCC-----MSLYSWSADSRLLLSG------------------------------------SKDSTLK 454 (500)
Q Consensus 419 ~~~~~---~~~~~~~~-----~~~~~~s~~~~~l~s~------------------------------------s~d~~v~ 454 (500)
....+ ........ -...+++|+..+++.. ..+|.|.
T Consensus 362 ~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~ 441 (668)
T 1kv9_A 362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL 441 (668)
T ss_dssp TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred ccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEE
Confidence 00000 00000000 0113566666555432 1347899
Q ss_pred EEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 455 VWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 455 iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
.||+.+++.+-..+.+ ..+....+...+..++.++.|+.|+.|+
T Consensus 442 A~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 442 AWDPVKQKAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp EEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred EEeCCCCcEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhh
Confidence 9999999876544322 2223333445678899999999999986
No 242
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.57 E-value=1.9e-05 Score=74.62 Aligned_cols=232 Identities=17% Similarity=0.148 Sum_probs=130.3
Q ss_pred eEEEEeCCCcEEEEECCCC----eEEEEec------Cc-cccEEEEEeCCCCeEEEEeCC------CeEEEEeCCCCeeE
Q 010816 212 RFVSASKDGDARIWDVSLR----KCVICLS------GH-TLAVTCVKWGGDGVIYTGSQD------CTIKVWETTQGKLI 274 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~----~~~~~~~------~h-~~~v~~~~~~~~~~l~t~~~d------g~i~lwd~~~~~~~ 274 (500)
.++++-.++.|.+.|+.+. +...++. .. ...-..+...+++.++++..+ +.|.+.|..+.+.+
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~vlD~~T~~v~ 177 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILMLDHYSFEPL 177 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEEECTTTCCEE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEEEECCCCeEE
Confidence 4667778899999998755 5555552 01 112234566788866665444 78999999999888
Q ss_pred EEeecCCce---EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEe----------------
Q 010816 275 RELKGHGHW---VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSG---------------- 335 (500)
Q Consensus 275 ~~~~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------- 335 (500)
..+.....+ -..+.++++. +.+++.
T Consensus 178 ~~~~~~~~~~~~~Yd~~~~p~~------------------------------------~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 178 GKWEIDRGDQYLAYDFWWNLPN------------------------------------EVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EECCSBCTTCCCCCCEEEETTT------------------------------------TEEEECBCCCHHHHTTCCCTTT
T ss_pred EEEccCCCCccccceEEECCCC------------------------------------CEEEEccCcCccccccccchhh
Confidence 877532111 1112223321 223333
Q ss_pred ---eCCCeEEEEcCCCCCCCceeee-c-ccCcEEEEEE--CCCCCEEEEEe------CCCcEEEEeCCCCceEEEEeCCc
Q 010816 336 ---SDDFTMFLWEPAVSKQPKTRMT-G-HQQLVNHVYF--SPDGQWVASAS------FDKSIKLWNGTTGKFVAVFRGHV 402 (500)
Q Consensus 336 ---s~d~~v~~wd~~~~~~~~~~~~-~-h~~~v~~l~~--sp~g~~lasgs------~Dg~i~lwd~~~~~~~~~~~~h~ 402 (500)
..+.+|.+||....+ ....+. + .......+.| +|+|+++.+++ .+++|.+|....|+.... +
T Consensus 222 ~~~~~~d~V~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~-~--- 296 (462)
T 2ece_A 222 LKDRYGNRIHFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAE-K--- 296 (462)
T ss_dssp HHHHSCCEEEEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEE-E---
T ss_pred hhhccCCEEEEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEE-E---
Confidence 246789999986532 222222 1 1123455656 99999887766 567888887655432110 0
Q ss_pred ccEEEEEeeeeeeecCC---CCceeeeeccccceeeEEcCCCCEEEEEEC-CCcEEEEECCC---ccccccccCc-----
Q 010816 403 GPVYQIRFELIYCFRYP---SNFYCVVDMSCCMSLYSWSADSRLLLSGSK-DSTLKVWDIRT---QKLKQDLPGH----- 470 (500)
Q Consensus 403 ~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~-d~~v~iwd~~~---~~~~~~~~~h----- 470 (500)
+..+....... ..+ ..+.. .....+.+.+|+||++|.++.. .+.|.+||+.. .+++..++-.
T Consensus 297 --vIdi~~~~v~~-~lp~~~~~f~~---~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~ 370 (462)
T 2ece_A 297 --VIEIPAEPLEG-NLPEILKPFKA---VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHR 370 (462)
T ss_dssp --EEEECCEECCS-SCCGGGGGGTE---ECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTC
T ss_pred --EEeCCCccccc-ccccccccccc---CCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecc
Confidence 00010000000 000 00000 0123455678999999998876 67999999853 2333322211
Q ss_pred ------c---cCEEEEEEcCCCCEEEEEe
Q 010816 471 ------A---DEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 471 ------~---~~V~~l~~s~dg~~l~s~~ 490 (500)
. +.-..+.++|||++|+.+.
T Consensus 371 ~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 371 ADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp BCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 0235788999999999887
No 243
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.57 E-value=2.4e-05 Score=78.41 Aligned_cols=114 Identities=11% Similarity=0.044 Sum_probs=64.5
Q ss_pred CCeEEEEeCCCcEEEEeCCCCceeEEecCCCCC---------EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-c
Q 010816 120 GRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNW---------VLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-L 189 (500)
Q Consensus 120 ~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~---------v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~ 189 (500)
+..++.++.++.+.-+|..+++.+......... -..+++ .+..|+.++.|+.|..+|.++|+..-.. .
T Consensus 68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 344555555444888999999887765432211 011122 3567888889999999999999864321 1
Q ss_pred cCcccceEEEEeeeeecC--CCCc-eEEEEe------CCCcEEEEECCCCeEEEEe
Q 010816 190 SGHKKWITGISWEPVHLN--APCR-RFVSAS------KDGDARIWDVSLRKCVICL 236 (500)
Q Consensus 190 ~~~~~~v~~~~~~~~~~~--~~~~-~~~s~s------~dg~v~iwd~~~~~~~~~~ 236 (500)
..+... ..+.-.|.-.. ..++ .++.++ .++.|.-+|..+++.+...
T Consensus 146 ~~~~~~-~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 146 ADHGAG-YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMR 200 (582)
T ss_dssp SCGGGT-CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEE
T ss_pred CCCCcC-cccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeec
Confidence 111100 00111111110 0111 455554 3789999999999877654
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.53 E-value=3.7e-05 Score=76.97 Aligned_cols=112 Identities=14% Similarity=0.170 Sum_probs=67.7
Q ss_pred CCeEEEEeC-CCcEEEEeC-CCCceeEEecCCCC----------CE-EEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccc
Q 010816 120 GRQLASGSG-DTTVRLWDL-NTQTPMFKCTGHKN----------WV-LCIAWSADGKHLVSGSKAGELQCWDPQTGKPSG 186 (500)
Q Consensus 120 ~~~lat~~~-d~~i~iwd~-~~~~~~~~~~~h~~----------~v-~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~ 186 (500)
+..++.++. ++.|.-+|. .+++.+........ .+ ..+.. ++..|+.++.|+.+..+|..+|+..-
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 455666666 888999999 88888776542211 00 11222 35678888899999999999997643
Q ss_pred cc-ccCcccceEEEEeeeeecCCCCceEEEEeC------CCcEEEEECCCCeEEEEec
Q 010816 187 NP-LSGHKKWITGISWEPVHLNAPCRRFVSASK------DGDARIWDVSLRKCVICLS 237 (500)
Q Consensus 187 ~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~------dg~v~iwd~~~~~~~~~~~ 237 (500)
.. ...+... ..+.-.|.- ...+++.++. ++.|..+|..+++.+..+.
T Consensus 140 ~~~~~~~~~~-~~~~~~P~v---~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 140 EVEVCDPKVG-STLTQAPFV---AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EEECCCGGGT-CBCCSCCEE---ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EecCCCCCcc-ceeccCCEE---ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 21 1111100 011111211 1234555554 7999999999998876554
No 245
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.49 E-value=3.7e-05 Score=68.00 Aligned_cols=186 Identities=8% Similarity=0.054 Sum_probs=116.2
Q ss_pred EEEEEeCCCCeEEEEeC---CCeEEEEeCCCCeeEEEeecCCc-eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 243 VTCVKWGGDGVIYTGSQ---DCTIKVWETTQGKLIRELKGHGH-WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~~---dg~i~lwd~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
...+.|++++.|+.++. ++.|+++|+.+++.++.+..... ....+++..
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--------------------------- 75 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--------------------------- 75 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC---------------------------
Confidence 46678888787776543 58999999999998887653221 111222221
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceee-ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRM-TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~ 397 (500)
....++.-.++.+.++|....+.. ..+ .+... ...+++||+.|..+..++.|.++|..+.+.+..
T Consensus 76 ----------~~lyv~t~~~~~v~viD~~t~~v~-~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~ 141 (266)
T 2iwa_A 76 ----------EKLYQVVWLKNIGFIYDRRTLSNI-KNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK 141 (266)
T ss_dssp ----------TEEEEEETTCSEEEEEETTTTEEE-EEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred ----------CEEEEEEecCCEEEEEECCCCcEE-EEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence 123445556889999997643322 222 22011 133556787676666788999999999887766
Q ss_pred EeCCc--cc---EEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc--
Q 010816 398 FRGHV--GP---VYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH-- 470 (500)
Q Consensus 398 ~~~h~--~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h-- 470 (500)
+.-.. .+ .+.+ .|. +|++.+....++.|.+.|..+++.+..+.-.
T Consensus 142 I~Vg~~~~p~~~~nel---------------------------e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~ 193 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNEL---------------------------EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNL 193 (266)
T ss_dssp EECEETTEECCCEEEE---------------------------EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHH
T ss_pred EEECCCCcccccceeE---------------------------EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCc
Confidence 55321 11 1111 344 6655555556789999999999887655321
Q ss_pred -----------ccCEEEEEEcCCCCEEEEEe-CCCcEEE
Q 010816 471 -----------ADEVFAVDWSPDGEKVASGG-KDRVLKL 497 (500)
Q Consensus 471 -----------~~~V~~l~~s~dg~~l~s~~-~D~~v~i 497 (500)
......++|+|++++|+.++ ...+|..
T Consensus 194 ~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 194 RKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp HHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred ccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 13458999999987765544 5565543
No 246
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.48 E-value=0.00032 Score=62.72 Aligned_cols=249 Identities=10% Similarity=0.007 Sum_probs=132.2
Q ss_pred EEEEEeCCCeEEEEeCCCCCccc----ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc
Q 010816 164 HLVSGSKAGELQCWDPQTGKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH 239 (500)
Q Consensus 164 ~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h 239 (500)
+|+.+.. +.|+.+++....... ..+........++.|.+. ....+++-..++.|..++.............
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~----~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~ 77 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCV----DKVVYWTDISEPSIGRASLHGGEPTTIIRQD 77 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETT----TTEEEEEETTTTEEEEEESSSCCCEEEECTT
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecC----CCEEEEEECCCCEEEEEecCCCCcEEEEECC
Confidence 4444443 467888876543210 001111233456666542 2345566667789999998765443333322
Q ss_pred cccEEEEEeCCC-CeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHH
Q 010816 240 TLAVTCVKWGGD-GVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAA 317 (500)
Q Consensus 240 ~~~v~~~~~~~~-~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (500)
......++++++ +.++.+ ...+.|.+++................-..++++++
T Consensus 78 ~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~------------------------- 132 (267)
T 1npe_A 78 LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPV------------------------- 132 (267)
T ss_dssp CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETT-------------------------
T ss_pred CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeC-------------------------
Confidence 245677888864 555554 45678999987543221111111122344555442
Q ss_pred HHhhhhhcCCCCcEE-EEeeC--CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeCCCCc
Q 010816 318 LERYNKIKGNAPERL-VSGSD--DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 318 ~~~~~~~~~~~~~~~-~s~s~--d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~~~~~ 393 (500)
...+ ++... .+.|..+++.... ............+.++++|++..| ++-...+.|.++|.....
T Consensus 133 -----------~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 133 -----------RGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp -----------TTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred -----------CCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 1223 22222 3567666654221 111111223457899999987655 455556889999986543
Q ss_pred eEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECCCccccccccCcc-
Q 010816 394 FVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIRTQKLKQDLPGHA- 471 (500)
Q Consensus 394 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~~~~~h~- 471 (500)
....+.+-..+ .. ++ +++..|+.+. ..+.|.++|..+++.+..+....
T Consensus 201 ~~~~~~~~~~P-~g---------------------------i~--~d~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~ 250 (267)
T 1npe_A 201 RRKVLEGLQYP-FA---------------------------VT--SYGKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ 250 (267)
T ss_dssp EEEEEECCCSE-EE---------------------------EE--EETTEEEEEETTTTEEEEEETTTTEEEEEECCSSC
T ss_pred eEEEecCCCCc-eE---------------------------EE--EeCCEEEEEECCCCeEEEEeCCCCCceEEEccccc
Confidence 22222111111 01 12 2345555555 56899999999888777665332
Q ss_pred cCEEEEEEcCCCC
Q 010816 472 DEVFAVDWSPDGE 484 (500)
Q Consensus 472 ~~V~~l~~s~dg~ 484 (500)
...+.+++.|++.
T Consensus 251 ~~p~gi~~~~~~~ 263 (267)
T 1npe_A 251 TRLYGITIALSQC 263 (267)
T ss_dssp CCCCCEEEECSCC
T ss_pred cccceeeecCccC
Confidence 2467788888764
No 247
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.45 E-value=9.5e-06 Score=83.11 Aligned_cols=114 Identities=18% Similarity=0.248 Sum_probs=68.8
Q ss_pred EEEEcC-CCCeEEEEeCCC-----------cEEEEeCCCCce--eEEe-cCCCCCEEEEEEcCCCCEEEEEeC-CCeEEE
Q 010816 113 SVAFSP-DGRQLASGSGDT-----------TVRLWDLNTQTP--MFKC-TGHKNWVLCIAWSADGKHLVSGSK-AGELQC 176 (500)
Q Consensus 113 ~~~~sp-~~~~lat~~~d~-----------~i~iwd~~~~~~--~~~~-~~h~~~v~~v~~s~~~~~l~s~~~-d~~i~~ 176 (500)
++++.| +++.++.|+.+. .+.+||..+++- +..+ ..+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 888888887543 588999887642 2222 123333445777889999999885 468999
Q ss_pred EeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEe-CC-----CcEEEEECCCCeE
Q 010816 177 WDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSAS-KD-----GDARIWDVSLRKC 232 (500)
Q Consensus 177 wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s-~d-----g~v~iwd~~~~~~ 232 (500)
||+.+.+..... +...... .++.. ..+++.++.|+ .+ ..+.+||..+.+-
T Consensus 270 yd~~t~~W~~~~~~~~~R~~-~s~~~-----~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGY-QSSAT-----MSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSS-CEEEE-----CTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ecCcCCceeECCCCCccccc-cceEE-----ecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 998765422111 1111100 11111 12456778887 34 5789999887653
No 248
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.43 E-value=3.7e-05 Score=76.99 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=67.0
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCCcccccccCcccceE------EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEE
Q 010816 162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKKWIT------GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCV 233 (500)
Q Consensus 162 ~~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~~v~------~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~ 233 (500)
+..|+.++. ++.|..+|. .+|+.+-.........+. .+...|. ....+++.++.|+.+..+|..+++.+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~dg~l~alD~~tG~~~ 138 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLA---YGAGQIVKKQANGHLLALDAKTGKIN 138 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCE---EETTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccE---EECCEEEEEeCCCEEEEEECCCCCEE
Confidence 345666666 788888888 788754221111000000 0000111 12357788888999999999999887
Q ss_pred EEecCcc--c--cEEEEEeCCCCeEEEEeC------CCeEEEEeCCCCeeEEEeec
Q 010816 234 ICLSGHT--L--AVTCVKWGGDGVIYTGSQ------DCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 234 ~~~~~h~--~--~v~~~~~~~~~~l~t~~~------dg~i~lwd~~~~~~~~~~~~ 279 (500)
....... . .+.+.....++.++.++. ++.|..+|..+|+.+..+..
T Consensus 139 W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 139 WEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 6543211 1 111100011567777665 79999999999998876653
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.40 E-value=4.1e-05 Score=66.94 Aligned_cols=182 Identities=10% Similarity=0.135 Sum_probs=109.8
Q ss_pred EEEEEeCCCCeE-EEEeCCC--eEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 243 VTCVKWGGDGVI-YTGSQDC--TIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 243 v~~~~~~~~~~l-~t~~~dg--~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
...+.|+ ++.| .+.+.+| .|+.+|+.+++.++.+....... ..++...
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g--------------------------- 96 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWK--------------------------- 96 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeC---------------------------
Confidence 4567777 4554 4555655 89999999999888765332211 1122211
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 398 (500)
....+..-.++.+.++|....+.. ..+.-.. ....+++|++.|+.+..++.|.++|..+.+.+..+
T Consensus 97 ----------~~ly~ltw~~~~v~v~D~~t~~~~-~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 97 ----------DKIVGLTWKNGLGFVWNIRNLRQV-RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTCCEE-EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred ----------CEEEEEEeeCCEEEEEECccCcEE-EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 123344456889999997654332 2222111 11233457777776666788999999999887765
Q ss_pred eCCc--ccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccCc------
Q 010816 399 RGHV--GPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPGH------ 470 (500)
Q Consensus 399 ~~h~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~h------ 470 (500)
.... .++..+ .-+.|. +|++.+..-.++.|.+.|.++++.+..+.-.
T Consensus 163 ~V~~~g~~~~~l------------------------NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~ 217 (262)
T 3nol_A 163 TVTAHGEELPEL------------------------NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEA 217 (262)
T ss_dssp ECEETTEECCCE------------------------EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGS
T ss_pred EeccCCcccccc------------------------ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCcccc
Confidence 5321 111100 001233 6665555556789999999998876543221
Q ss_pred ------ccCEEEEEEcCCCCEEEEEeC
Q 010816 471 ------ADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 471 ------~~~V~~l~~s~dg~~l~s~~~ 491 (500)
.+-.+.++|+|+++.|..+|.
T Consensus 218 ~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 218 GPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ccccCcCCceEEEEEcCCCCEEEEECC
Confidence 124579999999988887776
No 250
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=6.1e-05 Score=65.84 Aligned_cols=182 Identities=9% Similarity=0.022 Sum_probs=111.1
Q ss_pred EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCce-EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 243 VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHW-VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
...+.|+.+..+.+.+.+|.|+.+|+.+++.++.+ ..... -..+++..
T Consensus 57 tqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g------------------------------ 105 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG------------------------------ 105 (268)
T ss_dssp EEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS------------------------------
T ss_pred cceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC------------------------------
Confidence 45667775445667788899999999999887765 22211 11222211
Q ss_pred hhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCC
Q 010816 322 NKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGH 401 (500)
Q Consensus 322 ~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h 401 (500)
....+..-.++.+.++|....+.. ..+..... ...+++|++.|+.+..++.|.++|..+.+.+..+...
T Consensus 106 -------~~Ly~ltw~~~~v~V~D~~Tl~~~-~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~ 174 (268)
T 3nok_A 106 -------ERLYQLTWTEGLLFTWSGMPPQRE-RTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK 174 (268)
T ss_dssp -------SCEEEEESSSCEEEEEETTTTEEE-EEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE
T ss_pred -------CEEEEEEccCCEEEEEECCcCcEE-EEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC
Confidence 123445557889999997643322 22221111 1223357887777777899999999999887766532
Q ss_pred cc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC----------
Q 010816 402 VG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG---------- 469 (500)
Q Consensus 402 ~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---------- 469 (500)
.. ++..+ .-+.|. +|++.+..-.++.|.+.|.++++.+..+.-
T Consensus 175 ~~g~~v~~l------------------------NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~ 229 (268)
T 3nok_A 175 LRGQPVELI------------------------NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQ 229 (268)
T ss_dssp ETTEECCCE------------------------EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTT
T ss_pred CCCcccccc------------------------cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCccccccc
Confidence 21 11000 011233 676555554678999999999887654321
Q ss_pred ---cccCEEEEEEcCCCCEEEEEeC
Q 010816 470 ---HADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 470 ---h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
-.+-.+.++|+|+++.|..+|.
T Consensus 230 ~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 230 VTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccCcCCceEEEEEcCCCCEEEEeCC
Confidence 1134579999998877776665
No 251
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.34 E-value=0.00038 Score=65.86 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=91.9
Q ss_pred EEc--CCCCeEEEE-eCCCcEEEEeCCCC----ceeEEec------C-CCCCEEEEEEcCCCCEEEEEeCC------CeE
Q 010816 115 AFS--PDGRQLASG-SGDTTVRLWDLNTQ----TPMFKCT------G-HKNWVLCIAWSADGKHLVSGSKA------GEL 174 (500)
Q Consensus 115 ~~s--p~~~~lat~-~~d~~i~iwd~~~~----~~~~~~~------~-h~~~v~~v~~s~~~~~l~s~~~d------~~i 174 (500)
.++ +++++|+.. ..++.|.|.|+.+. +....+. . -...-..+..+|+| +++++..+ +.|
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 346 788877655 46889999998754 2222231 0 11134556778999 77776555 789
Q ss_pred EEEeCCCCCcccccccC-cc-cceEEEEeeeeecCCCCceEEEEe-------------------CCCcEEEEECCCCeEE
Q 010816 175 QCWDPQTGKPSGNPLSG-HK-KWITGISWEPVHLNAPCRRFVSAS-------------------KDGDARIWDVSLRKCV 233 (500)
Q Consensus 175 ~~wd~~~~~~~~~~~~~-~~-~~v~~~~~~~~~~~~~~~~~~s~s-------------------~dg~v~iwd~~~~~~~ 233 (500)
.+.|.++++.......+ .. ..-..+.|+| +.+.+++.. .+.+|.+||+.+++.+
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-----~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-----PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEET-----TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECC-----CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 99999988765433212 11 1112344554 334666664 3689999999988777
Q ss_pred EEecCc-c-ccEEEEEe--CCCCe-E-EEEe-----CCCeEEEEeCCCCe
Q 010816 234 ICLSGH-T-LAVTCVKW--GGDGV-I-YTGS-----QDCTIKVWETTQGK 272 (500)
Q Consensus 234 ~~~~~h-~-~~v~~~~~--~~~~~-l-~t~~-----~dg~i~lwd~~~~~ 272 (500)
.++.-. . ..-..+.| ++++. + +++. .+++|.+|....|+
T Consensus 242 ~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~ 291 (462)
T 2ece_A 242 HSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK 291 (462)
T ss_dssp EEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE
T ss_pred eEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc
Confidence 666432 1 22334444 88873 3 3444 66788887665443
No 252
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.28 E-value=0.00065 Score=60.06 Aligned_cols=157 Identities=11% Similarity=-0.004 Sum_probs=102.9
Q ss_pred cEEEEEEcCCCCeEEEEeC--CCcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcc
Q 010816 110 AVLSVAFSPDGRQLASGSG--DTTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~--d~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~ 185 (500)
....++|+|++.+.++.+. ++.|++.|..+++.+..+.-.. .....+++. ++.|.. .-.++.+.++|..+.+..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 3578999999755555543 6799999999998877654211 122344443 555554 456789999999988765
Q ss_pred cccccC-cccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEeCCCCeEEEEe-
Q 010816 186 GNPLSG-HKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS- 258 (500)
Q Consensus 186 ~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~t~~- 258 (500)
...-.+ ... .++++ ++++++.+..++.|.+.|..+.+.+..+.-.. .....+.|. ++.+++..
T Consensus 100 ~~i~~g~~~g--~glt~-------Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 100 KNFTHQMKDG--WGLAT-------DGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp EEEECCSSSC--CEEEE-------CSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEEECCCCCe--EEEEE-------CCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 432222 111 12221 33455555578899999999887766554211 124567777 67776655
Q ss_pred CCCeEEEEeCCCCeeEEEee
Q 010816 259 QDCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 259 ~dg~i~lwd~~~~~~~~~~~ 278 (500)
.++.|.+-|..+++.+..+.
T Consensus 170 ~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 170 QTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp TSSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEE
Confidence 57899999999999888775
No 253
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.23 E-value=0.00028 Score=70.66 Aligned_cols=117 Identities=9% Similarity=0.090 Sum_probs=66.6
Q ss_pred CCEEEEEeC-CCeEEEEeC-CCCCcccccccCccc---------c-eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 162 GKHLVSGSK-AGELQCWDP-QTGKPSGNPLSGHKK---------W-ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 162 ~~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~---------~-v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
+..|+.++. ++.|..+|. .+|+.+-........ . ..++...|.. .....+++.++.|+.+..+|..+
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~-g~~~~rV~v~t~dg~l~AlDa~T 140 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGD-GKTPALILKTQLDGNVAALNAET 140 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCC-SSSCCEEEEECTTSEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecC-CcceeEEEEEcCCCEEEEEECCC
Confidence 446666666 788888888 788754221111000 0 0112221100 00112378888999999999999
Q ss_pred CeEEEEecCcc----ccEEEEEeCCCCeEEEEe------CCCeEEEEeCCCCeeEEEeec
Q 010816 230 RKCVICLSGHT----LAVTCVKWGGDGVIYTGS------QDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 230 ~~~~~~~~~h~----~~v~~~~~~~~~~l~t~~------~dg~i~lwd~~~~~~~~~~~~ 279 (500)
++.+....... ..+.+.-.-.++.++.++ .++.|+-+|..+|+.+..+..
T Consensus 141 G~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 141 GETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 98876543221 011110000146777665 389999999999998876653
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.22 E-value=0.00049 Score=59.57 Aligned_cols=184 Identities=10% Similarity=0.101 Sum_probs=108.9
Q ss_pred cEEEEEeCCCCeEEEEeCC--CeEEEEeCCCCeeEEEeecCCceE-EEEEecCcceeeeccccCCCCCCCCHHHHHHHHH
Q 010816 242 AVTCVKWGGDGVIYTGSQD--CTIKVWETTQGKLIRELKGHGHWV-NSLALSTEYALRTGAFDHTGKQYSSPEEMKKAAL 318 (500)
Q Consensus 242 ~v~~~~~~~~~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (500)
....+.|+++..+.+.+.+ ..|+.+|+.+|+.++.+....... ..+++..
T Consensus 22 ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~--------------------------- 74 (243)
T 3mbr_X 22 FTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR--------------------------- 74 (243)
T ss_dssp CEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET---------------------------
T ss_pred ccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC---------------------------
Confidence 3556777764344455554 489999999999888765432211 1122211
Q ss_pred HhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEE
Q 010816 319 ERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVF 398 (500)
Q Consensus 319 ~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~ 398 (500)
.......-.++.+.++|....+.......+... ..+ .+++..|..+..++.|.++|..+.+.+..+
T Consensus 75 ----------~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G--wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I 140 (243)
T 3mbr_X 75 ----------DRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG--WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSI 140 (243)
T ss_dssp ----------TEEEEEESSSSEEEEEETTTTEEEEEEECSSCC--CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred ----------CEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc--eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence 123444556889999997543322221111111 233 356766666666889999999999887766
Q ss_pred eCCcc--cEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccccccccC-------
Q 010816 399 RGHVG--PVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKLKQDLPG------- 469 (500)
Q Consensus 399 ~~h~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------- 469 (500)
.-... ++..+ .-+.|. +|+..+..-.+..|.+.|.++++.+..+.-
T Consensus 141 ~V~~~g~~~~~l------------------------NeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 141 KVTAGGRPLDNL------------------------NELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp ECEETTEECCCE------------------------EEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred EEccCCcccccc------------------------eeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 53211 11100 001222 566555444677899999999887654321
Q ss_pred ------cccCEEEEEEcCCCCEEEEEeC
Q 010816 470 ------HADEVFAVDWSPDGEKVASGGK 491 (500)
Q Consensus 470 ------h~~~V~~l~~s~dg~~l~s~~~ 491 (500)
-.+-.+.++|+|+++.|...|.
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 1124579999999888877765
No 255
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.20 E-value=0.0028 Score=56.47 Aligned_cols=233 Identities=11% Similarity=0.008 Sum_probs=124.9
Q ss_pred eEEEEeCCCcEEEEeCCCCcee-----EEecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCcccccccCcccc
Q 010816 122 QLASGSGDTTVRLWDLNTQTPM-----FKCTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNPLSGHKKW 195 (500)
Q Consensus 122 ~lat~~~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 195 (500)
+|..+.. +.|+.+++.+.... ..+......+..++|+++++.|+. -..++.|..+++..+... .........
T Consensus 3 ~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~~~~~~~~~ 80 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT-TIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE-EEECTTCCC
T ss_pred EEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE-EEEECCCCC
Confidence 3444432 36777887654310 111112235678999997666654 445689999998755321 111111123
Q ss_pred eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC---CCeEEEEeCCCC
Q 010816 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ---DCTIKVWETTQG 271 (500)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~---dg~i~lwd~~~~ 271 (500)
..++.+.+. ....+++-...+.|.++++...............-..+++++ ++.|+.+.. .+.|..++...
T Consensus 81 p~~ia~d~~----~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg- 155 (267)
T 1npe_A 81 PEGIALDHL----GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG- 155 (267)
T ss_dssp EEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-
T ss_pred ccEEEEEec----CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-
Confidence 455665441 223555666678899988864332222222223456788887 567766654 36788887643
Q ss_pred eeEEEee-cCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCC
Q 010816 272 KLIRELK-GHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSK 350 (500)
Q Consensus 272 ~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~ 350 (500)
.....+. .....-..++++++. ....++-...+.|..+|.....
T Consensus 156 ~~~~~~~~~~~~~P~gia~d~~~-----------------------------------~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFDAFS-----------------------------------SQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCcEEEEcCCC-----------------------------------CEEEEEECCCCEEEEEecCCCc
Confidence 3222221 112223444444321 1234455556788888864321
Q ss_pred CCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 351 QPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 351 ~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
......+ ......+++. .+.++++....+.|..+|..+++.+..+.
T Consensus 201 -~~~~~~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 201 -RRKVLEG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp -EEEEEEC-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred -eEEEecC-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 1111111 2234566654 34444444456899999999998877664
No 256
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.14 E-value=0.00047 Score=69.07 Aligned_cols=113 Identities=13% Similarity=0.000 Sum_probs=62.7
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceE-E---EEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWIT-G---ISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG 238 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~-~---~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~ 238 (500)
..|+.++.++.|..+|.++|+.+-........... + +...+. ....+++.++.|+.+.-+|..+++.+.....
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a---~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAA---IYGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCE---EETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccE---EECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 45555555445888888888754321110000000 0 000000 1235678888999999999999998766543
Q ss_pred ccc----cEEE--EEeCC--CC--eEEEEe------CCCeEEEEeCCCCeeEEEee
Q 010816 239 HTL----AVTC--VKWGG--DG--VIYTGS------QDCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 239 h~~----~v~~--~~~~~--~~--~l~t~~------~dg~i~lwd~~~~~~~~~~~ 278 (500)
... .+.+ +.... ++ .+++++ .++.|.-+|..+|+.+....
T Consensus 146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~ 201 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRP 201 (582)
T ss_dssp SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEE
T ss_pred CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecC
Confidence 210 1110 11111 12 566665 37899999999999887554
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.13 E-value=0.0016 Score=59.92 Aligned_cols=241 Identities=10% Similarity=0.011 Sum_probs=129.0
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccccc------------------CcccceEEEEeeeeecCCCCceE
Q 010816 152 WVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLS------------------GHKKWITGISWEPVHLNAPCRRF 213 (500)
Q Consensus 152 ~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~ 213 (500)
...+++|.++|+++.++..++.|..||..+++....... .......++.+.+ ....+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~-----~~g~l 94 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL-----QNNQL 94 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET-----TTTEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcC-----CCCcE
Confidence 346688889988788888899999999876543210000 0012345565543 12345
Q ss_pred EEEeCCCcEEEEECCCCeEEEEe---cCc-cccEEEEEeCC-CCeEEEEeC------------------CCeEEEEeCCC
Q 010816 214 VSASKDGDARIWDVSLRKCVICL---SGH-TLAVTCVKWGG-DGVIYTGSQ------------------DCTIKVWETTQ 270 (500)
Q Consensus 214 ~s~s~dg~v~iwd~~~~~~~~~~---~~h-~~~v~~~~~~~-~~~l~t~~~------------------dg~i~lwd~~~ 270 (500)
..+...+.+..+|..++...... .+. ......+++.+ +|.++.+.. ++.|..||..+
T Consensus 95 ~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~ 174 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST 174 (322)
T ss_dssp EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT
T ss_pred EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC
Confidence 55555555888887655321111 111 12356788888 887766543 26677788766
Q ss_pred CeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-EEEeeCCCeEEEEcCCCC
Q 010816 271 GKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER-LVSGSDDFTMFLWEPAVS 349 (500)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~s~d~~v~~wd~~~~ 349 (500)
++....... ...-..++++++ +.. .++-+..+.|..+++...
T Consensus 175 ~~~~~~~~~-~~~p~gia~~~d------------------------------------g~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 175 KETTLLLKE-LHVPGGAEVSAD------------------------------------SSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp TEEEEEEEE-ESCCCEEEECTT------------------------------------SSEEEEEEGGGTEEEEEESSST
T ss_pred CEEEEeccC-CccCcceEECCC------------------------------------CCEEEEEeCCCCeEEEEECCCC
Confidence 653221111 011122333332 223 344455678888886532
Q ss_pred CC-CceeeecccCcEEEEEECCCCCEEEEEeC----------CCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecC
Q 010816 350 KQ-PKTRMTGHQQLVNHVYFSPDGQWVASASF----------DKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRY 418 (500)
Q Consensus 350 ~~-~~~~~~~h~~~v~~l~~sp~g~~lasgs~----------Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 418 (500)
.. ....+..... ...++++++|++.++... .+.|..+|.. |+.+..+....+.. +
T Consensus 218 ~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~-------- 283 (322)
T 2fp8_A 218 KKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----G-------- 283 (322)
T ss_dssp TTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----T--------
T ss_pred cCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----c--------
Confidence 21 1111111223 678999999987766544 4678888874 66665554322100 0
Q ss_pred CCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC
Q 010816 419 PSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~ 460 (500)
...+.+.+ .+++++++....+.|.++++..
T Consensus 284 -----------~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 284 -----------EHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp -----------SCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred -----------ccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 00111122 3566666666778888888753
No 258
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.10 E-value=0.0001 Score=72.25 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=130.9
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecC-ccccEEEEEe-C-CCC-eEEEEe------------------CCCeEEEEeCC
Q 010816 212 RFVSASKDGDARIWDVSLRKCVICLSG-HTLAVTCVKW-G-GDG-VIYTGS------------------QDCTIKVWETT 269 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~-h~~~v~~~~~-~-~~~-~l~t~~------------------~dg~i~lwd~~ 269 (500)
.|+....+..|.+-|+.+.++...+.- .......+++ . +++ ++++++ .++.+.+.|..
T Consensus 104 lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~ 183 (595)
T 1fwx_A 104 LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDAD 183 (595)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETT
T ss_pred EEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECC
Confidence 355556677899999999998774431 1233556666 3 444 566663 34689999999
Q ss_pred CCeeEEEeecCCceEEEEEecCcceeeecc-ccCCCCCCCCHHHHH-----------HHHHHhhhhhcCCCCcEEEEeeC
Q 010816 270 QGKLIRELKGHGHWVNSLALSTEYALRTGA-FDHTGKQYSSPEEMK-----------KAALERYNKIKGNAPERLVSGSD 337 (500)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~s~s~ 337 (500)
+.+...++.-.+. -..++++++....... .+..... ...... ...... .+.... ...+
T Consensus 184 t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~~~se~~~--~i~~~~~~~~d~v~V~~~~~~~~--~v~~Gk-~~~i---- 253 (595)
T 1fwx_A 184 KWEVAWQVLVSGN-LDNCDADYEGKWAFSTSYNSEKGM--TLPEMTAAEMDHIVVFNIAEIEK--AIAAGD-YQEL---- 253 (595)
T ss_dssp TTEEEEEEEESSC-CCCEEECSSSSEEEEEESCTTCCS--SHHHHTCCSEEEEEEEEHHHHHH--HHHHTC-SEEE----
T ss_pred CCeEEEEEEeCCC-ccceEECCCCCEEEEEecCcccCc--chhhccccccceEEEeeccceeE--eccCCC-eeEE----
Confidence 8888777654332 2345555554322111 1111000 000000 000000 000011 1111
Q ss_pred CCeEEEEcCCC--CCCCceeeecccCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEE--EEeCCcccEEEEEeee
Q 010816 338 DFTMFLWEPAV--SKQPKTRMTGHQQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFEL 412 (500)
Q Consensus 338 d~~v~~wd~~~--~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~ 412 (500)
+.|.+.|... .......+.. .....++.++|||+++++++ .+.+|.++|+.+.+... .+.-....+..
T Consensus 254 -~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~----- 326 (595)
T 1fwx_A 254 -NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE----- 326 (595)
T ss_dssp -TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC-----
T ss_pred -CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEE-----
Confidence 4588999875 2221222211 23456799999999776554 67899999998643100 00000000000
Q ss_pred eeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCC----------ccccccccCcccCE-----EEE
Q 010816 413 IYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRT----------QKLKQDLPGHADEV-----FAV 477 (500)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~----------~~~~~~~~~h~~~V-----~~l 477 (500)
.......-..+|+|+|...++...|+.|-+||+.+ .+.+.++..|...- .+.
T Consensus 327 -------------v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~ 393 (595)
T 1fwx_A 327 -------------PELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGE 393 (595)
T ss_dssp -------------CBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTT
T ss_pred -------------cCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccce
Confidence 00011122247899994444566799999999876 34445555443211 123
Q ss_pred EEcCCCCEEEEEeC
Q 010816 478 DWSPDGEKVASGGK 491 (500)
Q Consensus 478 ~~s~dg~~l~s~~~ 491 (500)
..+|||++|+++..
T Consensus 394 t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 394 TLDATNDWLVCLSK 407 (595)
T ss_dssp STTCCSSEEEEEES
T ss_pred EeCCCCCEEEEcCC
Confidence 45899999998743
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.07 E-value=0.00031 Score=72.96 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=91.0
Q ss_pred CCcc-cEEEEEEc-CCCCeEEEEeC-C----CcEEEEeCCCC-ceeEE-ecCCCCCEEEEEEcCCCCEEEEEeCC-----
Q 010816 106 GHTE-AVLSVAFS-PDGRQLASGSG-D----TTVRLWDLNTQ-TPMFK-CTGHKNWVLCIAWSADGKHLVSGSKA----- 171 (500)
Q Consensus 106 gh~~-~V~~~~~s-p~~~~lat~~~-d----~~i~iwd~~~~-~~~~~-~~~h~~~v~~v~~s~~~~~l~s~~~d----- 171 (500)
+|.- .+...+|| |||++||-+.. + .+|+++|+.++ +.+.. +. .....+.|+|||+.|+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE 246 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence 4443 67889999 99999885532 2 35999999988 53211 11 113468899999988877665
Q ss_pred CeEEEEeCCCCCcccccc-c-CcccceEEEEeeeeecCCCCceEEEEe---CCCcEEEEECCCC--eE--EEEecCcccc
Q 010816 172 GELQCWDPQTGKPSGNPL-S-GHKKWITGISWEPVHLNAPCRRFVSAS---KDGDARIWDVSLR--KC--VICLSGHTLA 242 (500)
Q Consensus 172 ~~i~~wd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~~~~~~~~s~s---~dg~v~iwd~~~~--~~--~~~~~~h~~~ 242 (500)
..|.++++.++......+ . .......++.|+| +++.++..+ ....|+++|+..+ .. .....+....
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp-----Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA-----DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT-----TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECC-----CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 357788887654221111 1 1223345666665 455555443 2346788888765 22 2222333444
Q ss_pred EEEEEeCCCCeEEEEe-CC----CeEEEEeCCC
Q 010816 243 VTCVKWGGDGVIYTGS-QD----CTIKVWETTQ 270 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~-~d----g~i~lwd~~~ 270 (500)
..++.|..++.|+..+ .+ ..|..+|+.+
T Consensus 322 ~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 322 RYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 5556655455544433 33 2566667654
No 260
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.07 E-value=0.00096 Score=58.32 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=94.3
Q ss_pred ceEEEEeCCC--cEEEEECCCCeEEEEecCcccc-EEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEE
Q 010816 211 RRFVSASKDG--DARIWDVSLRKCVICLSGHTLA-VTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSL 287 (500)
Q Consensus 211 ~~~~s~s~dg--~v~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~ 287 (500)
..+.+.+.+| .|+.+|+.+++.+..+.-.... -..++...+......-.++.+.+||..+.+.+.++...... ..+
T Consensus 54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG-~gl 132 (262)
T 3nol_A 54 YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG-WGL 132 (262)
T ss_dssp EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC-CCE
T ss_pred EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc-eEE
Confidence 4667777766 8999999999987766432221 12234444433334446889999999999988887643211 111
Q ss_pred EecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee---ccc-CcE
Q 010816 288 ALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT---GHQ-QLV 363 (500)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~---~h~-~~v 363 (500)
+. .+..++.+..++.|.++|+...+....... +.. ..+
T Consensus 133 t~--------------------------------------dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 133 TH--------------------------------------NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EE--------------------------------------CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred ec--------------------------------------CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 11 123455555578899999865433222111 111 345
Q ss_pred EEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 364 NHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 364 ~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
+.+.|. +|...|..-.++.|.+.|..+|+.+..+..
T Consensus 175 NELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 175 NELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred ceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 667776 777666655688999999999999877653
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.06 E-value=0.0066 Score=55.35 Aligned_cols=152 Identities=13% Similarity=0.101 Sum_probs=84.2
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C-eEEEEeCCCCCcccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G-ELQCWDPQTGKPSGN 187 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~-~i~~wd~~~~~~~~~ 187 (500)
....++|+++++++++-..++.|..||..+... .... ....+..+++.++|+++++.... + .|..+|..+++....
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 456899999999777766889999999876432 2222 23468899999999866654332 2 466677776653211
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEec---------CccccEEEEEeCCCC-eE-E
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLS---------GHTLAVTCVKWGGDG-VI-Y 255 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~---------~h~~~v~~~~~~~~~-~l-~ 255 (500)
..........++.. ......+++-..++.|..+|...++. +.... +.-.....+ ++++ .| +
T Consensus 111 ~~~~~~~~~~g~~~-----~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 111 LTLPDAIFLNGITP-----LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYV 183 (306)
T ss_dssp EECTTCSCEEEEEE-----SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEE
T ss_pred EeCCCccccCcccc-----cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEE
Confidence 00001111122221 11222345555678888888765431 21110 111122233 3333 44 4
Q ss_pred EEeCCCeEEEEeCCC
Q 010816 256 TGSQDCTIKVWETTQ 270 (500)
Q Consensus 256 t~~~dg~i~lwd~~~ 270 (500)
+-...+.|..||+..
T Consensus 184 ~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDS 198 (306)
T ss_dssp EETTTTEEEEEEBCT
T ss_pred EeCCCCEEEEEEeCC
Confidence 455677899998764
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.03 E-value=0.0016 Score=56.97 Aligned_cols=150 Identities=15% Similarity=0.100 Sum_probs=96.9
Q ss_pred CceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEe
Q 010816 210 CRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLAL 289 (500)
Q Consensus 210 ~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~ 289 (500)
...+++.+.+|.|+++|+.+++.+..+-.....-..++...+......-.++.+.+||..+.+.+.++...... ..++.
T Consensus 65 ~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt~ 143 (268)
T 3nok_A 65 GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLCY 143 (268)
T ss_dssp TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEec
Confidence 35678888889999999999987665511111112355555544555567899999999999998887643211 11111
Q ss_pred cCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-ccc---CcEEE
Q 010816 290 STEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GHQ---QLVNH 365 (500)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h~---~~v~~ 365 (500)
.+..++.+..++.|.++|+...+....... .+. ..++.
T Consensus 144 --------------------------------------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNe 185 (268)
T 3nok_A 144 --------------------------------------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINE 185 (268)
T ss_dssp --------------------------------------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred --------------------------------------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccc
Confidence 123566666688999999765433222111 111 24567
Q ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 366 VYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 366 l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
+.|. +|...|..-.+..|.+-|..+|+.+..+.
T Consensus 186 Le~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 186 LECA-NGVIYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp EEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred cEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 7776 77766655568899999999999887765
No 263
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.96 E-value=0.0043 Score=53.70 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred cEEEEEEcCCCCeEEEEeCC--CcEEEEeCCCCceeEEecCCCCC-EEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCcc
Q 010816 110 AVLSVAFSPDGRQLASGSGD--TTVRLWDLNTQTPMFKCTGHKNW-VLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPS 185 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d--~~i~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~ 185 (500)
-...+.|++ +.+..+.+.+ ..|+++|+.+++.+....-.... -..+++ .++.|. ..-.++.+.++|.++.+..
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeCCEEEEEECCcCcEE
Confidence 456788987 5556666654 48999999999887766433222 122333 344444 4556899999999988765
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc-----ccEEEEEeCCCCeEEEEe-C
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT-----LAVTCVKWGGDGVIYTGS-Q 259 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~t~~-~ 259 (500)
.....+... .++++ +..+++.+..++.|.++|..+.+.+..+.-.. ..+..+.|. ++.++... .
T Consensus 99 ~ti~~~~~G--wglt~-------dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~ 168 (243)
T 3mbr_X 99 ARFRYPGEG--WALTS-------DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWL 168 (243)
T ss_dssp EEEECSSCC--CEEEE-------CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEeCCCCc--eEEee-------CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECC
Confidence 433222122 13322 23455555568899999999887766554211 234455665 56666655 5
Q ss_pred CCeEEEEeCCCCeeEEEee
Q 010816 260 DCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 260 dg~i~lwd~~~~~~~~~~~ 278 (500)
+..|.+.|..+|+.+..+.
T Consensus 169 s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 169 TSRIARIDPASGKVVAWID 187 (243)
T ss_dssp TTEEEEECTTTCBEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEE
Confidence 7789999999988776553
No 264
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.93 E-value=0.0024 Score=62.64 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=48.2
Q ss_pred ceeeEEcCCCCEEEEEE-CCCcEEEEECCCcc------------ccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 432 MSLYSWSADSRLLLSGS-KDSTLKVWDIRTQK------------LKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 432 ~~~~~~s~~~~~l~s~s-~d~~v~iwd~~~~~------------~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
...+.++|||+++++++ .+.+|.++|+.+.+ ....+.. ...-..++|+|||...++.--|++|-.|
T Consensus 279 PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kw 357 (595)
T 1fwx_A 279 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKW 357 (595)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEE
T ss_pred ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEE
Confidence 34457899999887766 57899999998653 1222221 2356889999999444566779999999
Q ss_pred c
Q 010816 499 M 499 (500)
Q Consensus 499 ~ 499 (500)
+
T Consensus 358 d 358 (595)
T 1fwx_A 358 N 358 (595)
T ss_dssp E
T ss_pred E
Confidence 6
No 265
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.89 E-value=0.014 Score=53.17 Aligned_cols=225 Identities=10% Similarity=0.032 Sum_probs=118.8
Q ss_pred eEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC--CC-eEEEEeCCCCe
Q 010816 196 ITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ--DC-TIKVWETTQGK 272 (500)
Q Consensus 196 v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~--dg-~i~lwd~~~~~ 272 (500)
..++.|.+ ++..+++-..++.|..||...... ..+. .......+++.+++.++.+.. ++ .|..+|..+++
T Consensus 34 pegia~~~-----~g~lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 34 LENLASAP-----DGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp EEEEEECT-----TSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred cceEEECC-----CCCEEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 34555544 334555555678888888765432 2221 123567888998887766653 23 46667777776
Q ss_pred eEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCC
Q 010816 273 LIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQ 351 (500)
Q Consensus 273 ~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~ 351 (500)
........ ......++..+ ....+++...++.|+.+|......
T Consensus 107 ~~~~~~~~~~~~~~g~~~~~------------------------------------~~~~~v~d~~~g~i~~~d~~~~~~ 150 (306)
T 2p4o_A 107 VETLLTLPDAIFLNGITPLS------------------------------------DTQYLTADSYRGAIWLIDVVQPSG 150 (306)
T ss_dssp EEEEEECTTCSCEEEEEESS------------------------------------SSEEEEEETTTTEEEEEETTTTEE
T ss_pred EEEEEeCCCccccCcccccC------------------------------------CCcEEEEECCCCeEEEEeCCCCcE
Confidence 43322110 01111111100 011234444567777777542110
Q ss_pred Cce---------eeecccCcEEEEEECCCCCEEE-EEeCCCcEEEEeCCC-CceEEEEeCCcccEEEEEeeeeeeecCCC
Q 010816 352 PKT---------RMTGHQQLVNHVYFSPDGQWVA-SASFDKSIKLWNGTT-GKFVAVFRGHVGPVYQIRFELIYCFRYPS 420 (500)
Q Consensus 352 ~~~---------~~~~h~~~v~~l~~sp~g~~la-sgs~Dg~i~lwd~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 420 (500)
... ...+.-...+.+ +|+++.|. +-...+.|+.|++.. ++.- . ..+.. ...
T Consensus 151 ~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~-----~-~~~~~-------~~~--- 212 (306)
T 2p4o_A 151 SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG-----E-PEIFV-------EQT--- 212 (306)
T ss_dssp EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC-----C-CEEEE-------ESC---
T ss_pred eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC-----c-cEEEe-------ccC---
Confidence 000 000111234555 78886554 445678899999864 3210 0 00000 000
Q ss_pred CceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECCCccc--cccccCcccCEEEEEEc---CCCCEEEEEeCC
Q 010816 421 NFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIRTQKL--KQDLPGHADEVFAVDWS---PDGEKVASGGKD 492 (500)
Q Consensus 421 ~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~h~~~V~~l~~s---~dg~~l~s~~~D 492 (500)
....+++.++|++.++-...+.|.++|.. ++. +..+........+++|. ||++.|+.++..
T Consensus 213 ----------~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 213 ----------NIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ----------CCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred ----------CCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 11223568899887777778899999975 444 22233233568899998 898888776553
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.88 E-value=0.0057 Score=56.21 Aligned_cols=237 Identities=12% Similarity=0.103 Sum_probs=119.6
Q ss_pred ceEEEEeCCCcEEEEECCCCeEEEEe-cC------------------ccccEEEEEeCC-CCeEEEEeCCCeEEEEeCCC
Q 010816 211 RRFVSASKDGDARIWDVSLRKCVICL-SG------------------HTLAVTCVKWGG-DGVIYTGSQDCTIKVWETTQ 270 (500)
Q Consensus 211 ~~~~s~s~dg~v~iwd~~~~~~~~~~-~~------------------h~~~v~~~~~~~-~~~l~t~~~dg~i~lwd~~~ 270 (500)
..+.++..++.|..||...+...... .. .......+++.+ ++.|+.+...+.|..+|..+
T Consensus 31 ~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~ 110 (322)
T 2fp8_A 31 KGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEG 110 (322)
T ss_dssp SSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTC
T ss_pred CEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCC
Confidence 44777778888999988765432111 00 012467788886 78888887777788898765
Q ss_pred CeeEEEeec--C---CceEEEEEecC-cceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEE
Q 010816 271 GKLIRELKG--H---GHWVNSLALST-EYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLW 344 (500)
Q Consensus 271 ~~~~~~~~~--~---~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~w 344 (500)
+.. ..+.. . ......+++.+ +..+........ +.... .... ++.+..++.|..+
T Consensus 111 g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~---~~~~~-~~~~---------------~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 111 GHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTL---YDDRG-VQQI---------------MDTSDKTGRLIKY 170 (322)
T ss_dssp EEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSS---CCTTC-HHHH---------------HHHTCCCEEEEEE
T ss_pred CEE-EEecccCCCCcccccceEEEecCCCEEEEECCccc---ccccc-ccee---------------hcccCCCceEEEE
Confidence 532 22211 1 11234455555 432222111000 00000 0000 0001123556666
Q ss_pred cCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCce--EEEEeCCcccEEEEEeeeeeeecCCCC
Q 010816 345 EPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGKF--VAVFRGHVGPVYQIRFELIYCFRYPSN 421 (500)
Q Consensus 345 d~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~ 421 (500)
|..... ...+.......+.++++|+|+.|..+ +..+.|++|++..... ...+....+
T Consensus 171 d~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g------------------ 230 (322)
T 2fp8_A 171 DPSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN------------------ 230 (322)
T ss_dssp ETTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS------------------
T ss_pred eCCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC------------------
Confidence 653221 11111112334678999999866554 5568999999875311 111110000
Q ss_pred ceeeeeccccceeeEEcCCCCEEEEEEC----------CCcEEEEECCCccccccccCc----ccCEEEEEEcCCCCEEE
Q 010816 422 FYCVVDMSCCMSLYSWSADSRLLLSGSK----------DSTLKVWDIRTQKLKQDLPGH----ADEVFAVDWSPDGEKVA 487 (500)
Q Consensus 422 ~~~~~~~~~~~~~~~~s~~~~~l~s~s~----------d~~v~iwd~~~~~~~~~~~~h----~~~V~~l~~s~dg~~l~ 487 (500)
...+++.++|.+.++... .+.|..+|.. ++.+..+... ...+..+.+ .+++..+
T Consensus 231 ----------P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v 298 (322)
T 2fp8_A 231 ----------PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYI 298 (322)
T ss_dssp ----------EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEE
T ss_pred ----------CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEE
Confidence 111255788886666544 4567888764 4544433322 234566666 3555555
Q ss_pred EEeCCCcEEEec
Q 010816 488 SGGKDRVLKLWM 499 (500)
Q Consensus 488 s~~~D~~v~iW~ 499 (500)
+....+.|..++
T Consensus 299 ~~~~~~~i~~~~ 310 (322)
T 2fp8_A 299 GTLFHGSVGILV 310 (322)
T ss_dssp ECSSCSEEEEEE
T ss_pred eecCCCceEEEe
Confidence 555667776654
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.61 E-value=0.016 Score=53.02 Aligned_cols=187 Identities=12% Similarity=0.192 Sum_probs=107.3
Q ss_pred eEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcE-
Q 010816 253 VIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPER- 331 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 331 (500)
.++.....+-+.+||+ +|+.++.+.. ..++.+.+-+...+. +..-+.
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~-----------------------------g~~~dla 89 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLN-----------------------------GKKVDIA 89 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEET-----------------------------TEEEEEE
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccC-----------------------------CceEeEE
Confidence 4666667789999999 8999888754 345666655432110 000112
Q ss_pred EEEeeC--CCeEEEEcCCCCCCCceeeec------cc-CcEEEEEE--CCC-CC-EEEEEeCCCcEEEEeCC---CC---
Q 010816 332 LVSGSD--DFTMFLWEPAVSKQPKTRMTG------HQ-QLVNHVYF--SPD-GQ-WVASASFDKSIKLWNGT---TG--- 392 (500)
Q Consensus 332 ~~s~s~--d~~v~~wd~~~~~~~~~~~~~------h~-~~v~~l~~--sp~-g~-~lasgs~Dg~i~lwd~~---~~--- 392 (500)
+++.-. +++|.+|++.........+.. .. ..+..+++ +|. +. ++.+...+|.+..|++. .|
T Consensus 90 ~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~ 169 (355)
T 3amr_A 90 AASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS 169 (355)
T ss_dssp EEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE
T ss_pred EEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc
Confidence 233334 578999965322222222211 11 44566777 774 43 67778888999999873 22
Q ss_pred -ceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEEECC-----Ccccccc
Q 010816 393 -KFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVWDIR-----TQKLKQD 466 (500)
Q Consensus 393 -~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iwd~~-----~~~~~~~ 466 (500)
+.++.+.....+- .....+....|+.+-.|.-|..|+.+ +++.+..
T Consensus 170 ~~lVR~f~lgsq~E----------------------------gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~ 221 (355)
T 3amr_A 170 GKKVRAFKMNSQTE----------------------------GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDR 221 (355)
T ss_dssp EEEEEEEECSSCEE----------------------------EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEE
T ss_pred ceEEEEecCCCCcc----------------------------eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEE
Confidence 3344443222111 11346778889999998777777755 2334433
Q ss_pred cc-Cc-ccCEEEEEE--cCCCC-EEEEEe-CCCcEEEec
Q 010816 467 LP-GH-ADEVFAVDW--SPDGE-KVASGG-KDRVLKLWM 499 (500)
Q Consensus 467 ~~-~h-~~~V~~l~~--s~dg~-~l~s~~-~D~~v~iW~ 499 (500)
+. ++ ...+-.++. .++|+ +|+.++ .+++..+|+
T Consensus 222 ~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 222 ADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp BSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred ecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 32 22 236777777 56666 555555 566777775
No 268
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.55 E-value=0.049 Score=50.02 Aligned_cols=269 Identities=10% Similarity=0.061 Sum_probs=126.7
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCccccc-c--cCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEE
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNP-L--SGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWD 226 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~--~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd 226 (500)
...+.+|.|.+++..+++ +.++.|. .....|+.-... . ......+.++.+.+ ...++ ++.++.|..-
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~------~~~~~-~g~~g~i~~S- 104 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG------NEGWI-VGEPPIMLHT- 104 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET------TEEEE-EEETTEEEEE-
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC------CeEEE-EECCCeEEEE-
Confidence 346889999877776764 5567652 223333321111 1 11234566776643 12333 4555644332
Q ss_pred CCCCeEEEEec---CccccEEEEEeCCCCeEEEEeCCCeEEE-EeCCCCeeE-EEeecCCceEEEEEecCcceeeecccc
Q 010816 227 VSLRKCVICLS---GHTLAVTCVKWGGDGVIYTGSQDCTIKV-WETTQGKLI-RELKGHGHWVNSLALSTEYALRTGAFD 301 (500)
Q Consensus 227 ~~~~~~~~~~~---~h~~~v~~~~~~~~~~l~t~~~dg~i~l-wd~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~ 301 (500)
...++.-.... .+...+..+.+.+++.++.++.++.|.. .| .|+.- .........+..+++.++
T Consensus 105 ~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~--------- 173 (327)
T 2xbg_A 105 TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS--------- 173 (327)
T ss_dssp SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTT---------
T ss_pred CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC---------
Confidence 12222222111 1223456666666666666666665422 22 23222 222222333444444332
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE-EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeC
Q 010816 302 HTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL-WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASF 380 (500)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~-wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~ 380 (500)
...++.+ .++.++. +|.. ...-..........+..+.+++++.+++. +.
T Consensus 174 ---------------------------~~~~~~g-~~G~~~~S~d~g-G~tW~~~~~~~~~~~~~~~~~~~g~~~~~-~~ 223 (327)
T 2xbg_A 174 ---------------------------GEYVAVS-SRGSFYSTWEPG-QTAWEPHNRTTSRRLHNMGFTPDGRLWMI-VN 223 (327)
T ss_dssp ---------------------------SCEEEEE-TTSSEEEEECTT-CSSCEEEECCSSSCEEEEEECTTSCEEEE-ET
T ss_pred ---------------------------CcEEEEE-CCCcEEEEeCCC-CCceeECCCCCCCccceeEECCCCCEEEE-eC
Confidence 1233333 3444333 3320 11111111234456888999999876654 46
Q ss_pred CCcEEEEeCCCCceEEEEeC----CcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEECCCcEEEE
Q 010816 381 DKSIKLWNGTTGKFVAVFRG----HVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGSKDSTLKVW 456 (500)
Q Consensus 381 Dg~i~lwd~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s~d~~v~iw 456 (500)
+|.+++.+...|+.-..+.. +...+. .+++.+++.+++++. ++.+ ++
T Consensus 224 ~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~---------------------------~v~~~~~~~~~~~g~-~g~i-~~ 274 (327)
T 2xbg_A 224 GGKIAFSDPDNSENWGELLSPLRRNSVGFL---------------------------DLAYRTPNEVWLAGG-AGAL-LC 274 (327)
T ss_dssp TTEEEEEETTEEEEECCCBCTTSSCCSCEE---------------------------EEEESSSSCEEEEES-TTCE-EE
T ss_pred CceEEEecCCCCCeeEeccCCcccCCcceE---------------------------EEEecCCCEEEEEeC-CCeE-EE
Confidence 78777764222221111110 001122 224567777666554 6666 33
Q ss_pred ECCCcccccccc---CcccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 457 DIRTQKLKQDLP---GHADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 457 d~~~~~~~~~~~---~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
....++.-..+. .+...++++.|.++ ..++.++.+|+|.-++
T Consensus 275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 275 SQDGGQTWQQDVDVKKVPSNFYKILFFSP-DQGFILGQKGILLRYV 319 (327)
T ss_dssp ESSTTSSCEECGGGTTSSSCCCEEEEEET-TEEEEECSTTEEEEEC
T ss_pred eCCCCcccEEcCccCCCCCCeEEEEEECC-CceEEEcCCceEEEEc
Confidence 333332211111 22345788888754 4577888899887664
No 269
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.44 E-value=0.0097 Score=61.75 Aligned_cols=53 Identities=9% Similarity=0.064 Sum_probs=32.1
Q ss_pred eEEEEcCCCCCCC-ceeee-cccCcEEEEEECCCCCEEEEEeC---CCcEEEEeCCCC
Q 010816 340 TMFLWEPAVSKQP-KTRMT-GHQQLVNHVYFSPDGQWVASASF---DKSIKLWNGTTG 392 (500)
Q Consensus 340 ~v~~wd~~~~~~~-~~~~~-~h~~~v~~l~~sp~g~~lasgs~---Dg~i~lwd~~~~ 392 (500)
.|+.+++...... ..... ........+.|||||++|+..+. ...|+++|+.++
T Consensus 248 ~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 248 KVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 5677776443211 11111 22345678899999999886653 346788888765
No 270
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.41 E-value=0.09 Score=49.54 Aligned_cols=244 Identities=11% Similarity=0.013 Sum_probs=130.4
Q ss_pred EEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCccccccc
Q 010816 112 LSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGNPLS 190 (500)
Q Consensus 112 ~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~~~~ 190 (500)
.|.+..+.+ +|+.+ ....|+..++.+........+ ...+..++|.+.+..|+ +-...+.|..+++..+.... ...
T Consensus 80 ~C~~~~~~~-~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-~~~ 155 (386)
T 3v65_B 80 SCKALGPEP-VLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-VVS 155 (386)
T ss_dssp CEEECSSCC-EEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-EEC
T ss_pred eECCccccc-eeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-EEe
Confidence 355555533 33333 345688888876554433333 34578999997655555 44567889999987553211 111
Q ss_pred CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC-C-CeEEEEe
Q 010816 191 GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIKVWE 267 (500)
Q Consensus 191 ~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~-d-g~i~lwd 267 (500)
.......++++.+. ....+++-...+.|.+.++........+......-..+++.+ ++.|+.+.. . +.|..++
T Consensus 156 ~~~~~p~glavd~~----~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 156 TGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp SSCSCCCCEEEETT----TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCCCccEEEEEeC----CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 11112234444321 223455556667777777754432222333333456777775 456655443 3 6787777
Q ss_pred CCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCC
Q 010816 268 TTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPA 347 (500)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~ 347 (500)
+..............+-..++++++. ....++-+..+.|..+|..
T Consensus 232 ~dG~~~~~~~~~~~~~PnGlavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 232 MDGSGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEEGGG-----------------------------------TEEEEEETTTTEEEEECTT
T ss_pred CCCCCcEEEEECCCCCeeeEEEeCCC-----------------------------------CEEEEEECCCCEEEEEeCC
Confidence 65332222222223334556655421 1233444456677777764
Q ss_pred CCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 348 VSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 348 ~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
... ..............+++ ..+.++.+-...+.|..++..+|+.+.++..
T Consensus 277 G~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 277 GSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp SCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCe-eEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence 322 22222222344667777 3455666666678899998777776655543
No 271
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.40 E-value=0.083 Score=49.01 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=131.5
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCcccc
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKPSGN 187 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~~~~ 187 (500)
+...|.+..+++.++++ ....|+..++.+........+ ...+..++|.+.+..|+ +-...+.|..+++..+....
T Consensus 34 d~~~C~~~~~~~~ll~~--~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~- 109 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFA--NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE- 109 (349)
T ss_dssp TSSCEEESSSCCEEEEE--CBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-
T ss_pred CCCcccccccCceeEee--cccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceE-
Confidence 33456566664433333 334588888876544333333 34578999997665555 44467889999987654221
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC-C-CeEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ-D-CTIK 264 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~-d-g~i~ 264 (500)
..........++++.+. ....+++-...+.|.+.++........+......-..+++++ ++.|+.... . +.|.
T Consensus 110 ~~~~~~~~p~glavd~~----~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 110 VVSTGLESPGGLAVDWV----HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EECSSCSCCCEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred EEeCCCCCccEEEEecC----CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 11111122234444321 233456666677888888765433332333333456778876 556655443 3 6788
Q ss_pred EEeCCCCeeEEEe-ecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEE
Q 010816 265 VWETTQGKLIREL-KGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFL 343 (500)
Q Consensus 265 lwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~ 343 (500)
.+++.. .....+ ......-..++++++. ....++-+..+.|..
T Consensus 186 r~~~dG-~~~~~~~~~~~~~PnGla~d~~~-----------------------------------~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 186 ASSMDG-SGRRIIADTHLFWPNGLTIDYAG-----------------------------------RRMYWVDAKHHVIER 229 (349)
T ss_dssp EEETTS-CSCEESCCSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEE
T ss_pred EEeCCC-CCcEEEEECCCCCcceEEEeCCC-----------------------------------CEEEEEECCCCEEEE
Confidence 787653 222222 2222334455555421 122334445567777
Q ss_pred EcCCCCCCCceeeecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 344 WEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 344 wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
+|..... ..............+++ ..+.++.+-...+.|..++..+|+.+..+.
T Consensus 230 ~~~dG~~-~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 230 ANLDGSH-RKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EETTSCS-CEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeCCCCc-eEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 7754321 12222222344567777 345555666667888888877777665554
No 272
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.39 E-value=0.06 Score=47.13 Aligned_cols=201 Identities=13% Similarity=0.088 Sum_probs=108.9
Q ss_pred ecCCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCCcEE
Q 010816 146 CTGHKNWVLCIAWSADGKHLVS-GSKAGELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDGDAR 223 (500)
Q Consensus 146 ~~~h~~~v~~v~~s~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~ 223 (500)
+.+-...+..++|+|+++.|++ ...++.|...|+. ++..... +.+ .....++++.+ ++..+++.-.++.+.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~-----~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIG-----DNQFVISDERDYAIY 94 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECS-----TTEEEEEETTTTEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeC-----CCEEEEEECCCCcEE
Confidence 3455567999999998776655 6667888888987 6544332 222 23455666542 333445555667888
Q ss_pred EEECCCCeE---EEEe------cCccccEEEEEeCCCC-eEEEEeCCCeEEEEeCC---CCeeEEEeec-------CCce
Q 010816 224 IWDVSLRKC---VICL------SGHTLAVTCVKWGGDG-VIYTGSQDCTIKVWETT---QGKLIRELKG-------HGHW 283 (500)
Q Consensus 224 iwd~~~~~~---~~~~------~~h~~~v~~~~~~~~~-~l~t~~~dg~i~lwd~~---~~~~~~~~~~-------~~~~ 283 (500)
++++..... +... ...+.....++|++.+ .|+++.......+|... .+..+..+.. ....
T Consensus 95 ~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 95 VISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 887754332 1111 1234556789998765 66666554444555442 1111111100 0011
Q ss_pred EEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee-cc---
Q 010816 284 VNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT-GH--- 359 (500)
Q Consensus 284 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~-~h--- 359 (500)
..+++++| ..+..++.+..++.+..+|..........+. +.
T Consensus 175 ~S~l~~dp-----------------------------------~tg~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 175 VSGAEFNQ-----------------------------------QKNTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGL 219 (255)
T ss_dssp CCEEEEET-----------------------------------TTTEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGC
T ss_pred ceeEEEcC-----------------------------------CCCeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCc
Confidence 12222222 1234566666777788887543211111122 11
Q ss_pred ---cCcEEEEEECCCCCEEEEEeCCCcEEEEeC
Q 010816 360 ---QQLVNHVYFSPDGQWVASASFDKSIKLWNG 389 (500)
Q Consensus 360 ---~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~ 389 (500)
-..-..|+|.++|++.++ ++-+.++.+..
T Consensus 220 ~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 220 SHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp SSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred ccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 135688999999986655 67777777754
No 273
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.19 E-value=0.17 Score=48.32 Aligned_cols=153 Identities=11% Similarity=0.122 Sum_probs=86.4
Q ss_pred cEEEEEEcC-CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCC-C----eEEEEeCCCCC
Q 010816 110 AVLSVAFSP-DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKA-G----ELQCWDPQTGK 183 (500)
Q Consensus 110 ~V~~~~~sp-~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d-~----~i~~wd~~~~~ 183 (500)
....++++| ++..|..+...+.|+.+|..++.... +.........++|+++|++|+.+... + .+...+. .+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~ 215 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESG 215 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGT
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCc
Confidence 346889998 45556666555889999988765433 22344568899999999966665542 2 2333333 232
Q ss_pred ccc-ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-CccccEEEEEeCCCCe-EEEE-eC
Q 010816 184 PSG-NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-GHTLAVTCVKWGGDGV-IYTG-SQ 259 (500)
Q Consensus 184 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~t~-~~ 259 (500)
... ..+. ......++++.|. ++..+++-..++.|..++...+....... +....-..++|++++. |+.+ ..
T Consensus 216 ~~~~~~l~-~~~~p~giavdp~----~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 216 FKVITELT-KGQNCNGAETHPI----NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp SCSEEEEE-ECSSCCCEEECTT----TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred eeeeeeec-cCCCceEEEEeCC----CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 210 0010 0111223333321 33455555667889999987665422111 1122345788998874 5544 46
Q ss_pred CCeEEEEeCC
Q 010816 260 DCTIKVWETT 269 (500)
Q Consensus 260 dg~i~lwd~~ 269 (500)
.+.|..++..
T Consensus 291 ~~~I~~~~~d 300 (430)
T 3tc9_A 291 QHYILRSDYD 300 (430)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEeCC
Confidence 7788887754
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.16 E-value=0.014 Score=59.61 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=47.4
Q ss_pred EEEEcCCCCeEEEEeC-CCcEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEe-CC-----CeEEEEeCCCCC
Q 010816 113 SVAFSPDGRQLASGSG-DTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGS-KA-----GELQCWDPQTGK 183 (500)
Q Consensus 113 ~~~~sp~~~~lat~~~-d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~-~d-----~~i~~wd~~~~~ 183 (500)
++++.+++++++.|+. +..+.+||..+..-...-..+ ...-.++...+++++++.|+ .+ ..+.+||+.+.+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 4677889999999984 568999998765321111111 12223455667899999988 44 568999998764
No 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.15 E-value=0.17 Score=47.56 Aligned_cols=216 Identities=7% Similarity=-0.082 Sum_probs=109.2
Q ss_pred CCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 218 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
....|+..++..........+ ......++|++ ++.|+.. ...+.|..+++..+.....+.........+++.+.
T Consensus 94 ~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--- 169 (386)
T 3v65_B 94 NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--- 169 (386)
T ss_dssp CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETT---
T ss_pred cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeC---
Confidence 445678888766554433333 23466788874 4555544 46678888887655432222211111222333221
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 375 (500)
.+...++-...+.|.+.++.... ............+.++++|.+..|
T Consensus 170 --------------------------------~g~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~P~giavdp~~g~l 216 (386)
T 3v65_B 170 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI 216 (386)
T ss_dssp --------------------------------TTEEEEEETTTTEEEECBTTSCS-CEEEECSSCSCEEEEEEETTTTEE
T ss_pred --------------------------------CCeEEEEcCCCCeEEEEeCCCCc-eEEeecCCCCCCcEEEEEcCCCeE
Confidence 12233444555677777654322 222222333567899999876655
Q ss_pred EEEe-CC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCc
Q 010816 376 ASAS-FD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDST 452 (500)
Q Consensus 376 asgs-~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~ 452 (500)
.... .. +.|..+++............... ...++++|++..|+.+. ..+.
T Consensus 217 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---------------------------PnGlavd~~~~~lY~aD~~~~~ 269 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGSGRRIIADTHLFW---------------------------PNGLTIDYAGRRMYWVDAKHHV 269 (386)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEECSSCSC---------------------------EEEEEEEGGGTEEEEEETTTTE
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCC---------------------------eeeEEEeCCCCEEEEEECCCCE
Confidence 4443 34 67887776543221111111111 12236787666665554 4578
Q ss_pred EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
|..+|+........+........++++. .+..+++-...+.|...
T Consensus 270 I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~ 314 (386)
T 3v65_B 270 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA 314 (386)
T ss_dssp EEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeEEEE
Confidence 9999876533322222223345677773 33333444445555544
No 276
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.07 E-value=0.31 Score=49.06 Aligned_cols=165 Identities=11% Similarity=0.020 Sum_probs=89.8
Q ss_pred ccEEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCcc
Q 010816 109 EAVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPS 185 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~ 185 (500)
.....+++++.+..|..+ ...+.|.+.++.+..........-.....|++.|.+..|.-... .+.|...++. |...
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~ 162 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSR 162 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCce
Confidence 457789999976655555 46789999999765433333233345678899887555555443 3566666654 2221
Q ss_pred cccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816 186 GNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (500)
Q Consensus 186 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~l 265 (500)
.......-..-.+++..+. ..+.+++-+..+.|...|+..........+....-..+++..+..+++-...+.|..
T Consensus 163 ~~l~~~~~~~P~Glald~~----~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~~ly~td~~~~~V~~ 238 (619)
T 3s94_A 163 FIIINSEIYWPNGLTLDYE----EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILYWTDWSTHSILA 238 (619)
T ss_dssp EEEECSSCSSEEEEEEETT----TTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSSEEEEECTTTCSEEE
T ss_pred EEEEeCCCCCCcEEEEEcc----CCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCCEEEEecCCCCEEEE
Confidence 1111111223355655442 223455555667788887754332221111111112445555544445556778999
Q ss_pred EeCCCCeeEEEee
Q 010816 266 WETTQGKLIRELK 278 (500)
Q Consensus 266 wd~~~~~~~~~~~ 278 (500)
.|..+|+....+.
T Consensus 239 ~d~~tg~~~~~i~ 251 (619)
T 3s94_A 239 CNKYTGEGLREIH 251 (619)
T ss_dssp EESSSCCCCEECC
T ss_pred EECCCCcccEEEe
Confidence 9988887655543
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.05 E-value=0.19 Score=46.45 Aligned_cols=216 Identities=7% Similarity=-0.081 Sum_probs=107.7
Q ss_pred CCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCccee
Q 010816 218 KDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYAL 295 (500)
Q Consensus 218 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 295 (500)
....|+..++..........+. .....++|++ ++.|+.. ...+.|..+++..+.....+.........+++.+.
T Consensus 51 ~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~--- 126 (349)
T 3v64_C 51 NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWV--- 126 (349)
T ss_dssp CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETT---
T ss_pred cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecC---
Confidence 3345777777655443333332 3467788874 4555554 45678888887654432222211112223333321
Q ss_pred eeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEE
Q 010816 296 RTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWV 375 (500)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l 375 (500)
.+...++-...+.|.+.++.... ........-...+.++++|.+..|
T Consensus 127 --------------------------------~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 127 --------------------------------HDKLYWTDSGTSRIEVANLDGAH-RKVLLWQSLEKPRAIALHPMEGTI 173 (349)
T ss_dssp --------------------------------TTEEEEEETTTTEEEEEETTSCS-CEEEECTTCSCEEEEEEETTTTEE
T ss_pred --------------------------------CCeEEEEcCCCCeEEEEcCCCCc-eEEEEeCCCCCcceEEEecCcCeE
Confidence 12233444556677777754322 122222333557899999965544
Q ss_pred -EEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCc
Q 010816 376 -ASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDST 452 (500)
Q Consensus 376 -asgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~ 452 (500)
.+-... +.|..+++..... ..+-... -.....++++|++..|+.+. ..+.
T Consensus 174 y~td~~~~~~I~r~~~dG~~~-~~~~~~~--------------------------~~~PnGla~d~~~~~lY~aD~~~~~ 226 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGR-RIIADTH--------------------------LFWPNGLTIDYAGRRMYWVDAKHHV 226 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSC-EESCCSS--------------------------CSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EEeccCCCCEEEEEeCCCCCc-EEEEECC--------------------------CCCcceEEEeCCCCEEEEEECCCCE
Confidence 444444 6788877653221 1111000 00112346787666666554 4578
Q ss_pred EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
|..+|+........+........++++. ++...++-...+.|...
T Consensus 227 I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V~~~ 271 (349)
T 3v64_C 227 IERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSINSA 271 (349)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCeEEEE
Confidence 9999986543222222223345667763 33333333344555443
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.04 E-value=0.19 Score=46.08 Aligned_cols=145 Identities=8% Similarity=-0.094 Sum_probs=72.4
Q ss_pred cccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEec----CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCC
Q 010816 108 TEAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCT----GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGK 183 (500)
Q Consensus 108 ~~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~----~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~ 183 (500)
...+.+|.|.+++..+|. +.++.| +...+.++.-.... .....+.+|.|.+ +. +..++.++.|.. ....|+
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEEE-cCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCCC
Confidence 347899999888887774 456655 33333332211111 1244688999976 33 444556665443 222233
Q ss_pred ccccccc--CcccceEEEEeeeeecCCCCceEEEEeCCCcEEE-EECCCCeEE-EEecCccccEEEEEeCCCCeEEEEeC
Q 010816 184 PSGNPLS--GHKKWITGISWEPVHLNAPCRRFVSASKDGDARI-WDVSLRKCV-ICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 184 ~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~i-wd~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
.-..... .+...+..+.+.+ +. .++.++.++.|.. .| .++.- ....++...+..+.+.+++.++..+.
T Consensus 110 tW~~~~~~~~~~~~~~~i~~~~-----~~-~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~ 181 (327)
T 2xbg_A 110 SWSQIPLDPKLPGSPRLIKALG-----NG-SAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181 (327)
T ss_dssp SCEECCCCTTCSSCEEEEEEEE-----TT-EEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEEEECTTSCEEEEET
T ss_pred CceECccccCCCCCeEEEEEEC-----CC-CEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEEEEcCCCcEEEEEC
Confidence 2111110 1222344554322 22 3344445565432 22 12211 11234455688889988887776666
Q ss_pred CCeEEE
Q 010816 260 DCTIKV 265 (500)
Q Consensus 260 dg~i~l 265 (500)
+|.+..
T Consensus 182 ~G~~~~ 187 (327)
T 2xbg_A 182 RGSFYS 187 (327)
T ss_dssp TSSEEE
T ss_pred CCcEEE
Confidence 665544
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.95 E-value=0.29 Score=46.77 Aligned_cols=47 Identities=11% Similarity=-0.043 Sum_probs=30.4
Q ss_pred eEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeC
Q 010816 212 RFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQ 259 (500)
Q Consensus 212 ~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~ 259 (500)
.+..+...+.|+.+|...+...... ........+++++++.|+.+..
T Consensus 154 ~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~ 200 (433)
T 4hw6_A 154 DLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDD 200 (433)
T ss_dssp EEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEEC
T ss_pred EEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcC
Confidence 3444433388999998777655433 3344567888988877766654
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.80 E-value=0.28 Score=46.95 Aligned_cols=192 Identities=8% Similarity=0.003 Sum_probs=102.7
Q ss_pred EEEEeCCC---CeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHh
Q 010816 244 TCVKWGGD---GVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALER 320 (500)
Q Consensus 244 ~~~~~~~~---~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (500)
..++|+++ +.|+.+...+.|+.+|..++...... ........++++++.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG--------------------------- 193 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNG--------------------------- 193 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTC---------------------------
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCC---------------------------
Confidence 46788874 77777766689999998777654433 233345566665542
Q ss_pred hhhhcCCCCcEEEEeeC---CC-eEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceE
Q 010816 321 YNKIKGNAPERLVSGSD---DF-TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 321 ~~~~~~~~~~~~~s~s~---d~-~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
..+++... +. .+...+..........+ ........++++| +|.+.++-..++.|+.+|..++...
T Consensus 194 ---------~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~ 263 (433)
T 4hw6_A 194 ---------DMVVVDDQSSDTNTGIYLFTRASGFTERLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLT 263 (433)
T ss_dssp ---------CEEEEECCSCTTSEEEEEECGGGTTCCEEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEE
T ss_pred ---------CEEEEcCCCCcccceEEEEECCCCeeccccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEE
Confidence 22222211 11 12222221111100111 1223346688999 7777767667789999999877652
Q ss_pred EEE-eCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-CCCcEEEEECC--Ccccc--ccccC
Q 010816 396 AVF-RGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-KDSTLKVWDIR--TQKLK--QDLPG 469 (500)
Q Consensus 396 ~~~-~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~d~~v~iwd~~--~~~~~--~~~~~ 469 (500)
..+ .....+ ....++++|+|+.|+.+. ..+.|+.++.. +++.. ..+.+
T Consensus 264 ~~~~~~~~~~--------------------------~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag 317 (433)
T 4hw6_A 264 EEEVMMDTKG--------------------------SNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCG 317 (433)
T ss_dssp EEEEECSCCS--------------------------SCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEE
T ss_pred EEEeccCCCC--------------------------CcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEe
Confidence 222 110000 001247899999555554 56789997754 23211 11111
Q ss_pred ------c---------ccCEEEEEE---------cCCCCEEEEEeCCCcEEEec
Q 010816 470 ------H---------ADEVFAVDW---------SPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 470 ------h---------~~~V~~l~~---------s~dg~~l~s~~~D~~v~iW~ 499 (500)
. ...-..+++ .++|...++-...++|+.++
T Consensus 318 ~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~ 371 (433)
T 4hw6_A 318 QHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT 371 (433)
T ss_dssp CTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred cCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence 1 123567888 66666655555566776653
No 281
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.76 E-value=0.38 Score=45.41 Aligned_cols=244 Identities=11% Similarity=0.000 Sum_probs=129.5
Q ss_pred eEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCC---cccccccCcccceE
Q 010816 122 QLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSG-SKAGELQCWDPQTGK---PSGNPLSGHKKWIT 197 (500)
Q Consensus 122 ~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~-~~d~~i~~wd~~~~~---~~~~~~~~~~~~v~ 197 (500)
+|+.+. ...|+..++.+....... .....+..++|.+.+..|+-+ ...+.|+.+++.... ..............
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~-~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred eeEEec-cceeEEEccCCcceeEec-cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 344433 467888888766543333 334568899999866666544 456889989886421 11111111222334
Q ss_pred EEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeE
Q 010816 198 GISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLI 274 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~ 274 (500)
++++.+. ....+++-...+.|.+.++........+.........++..+ .+.|+.... .+.|...++......
T Consensus 163 glavD~~----~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 163 GLAVDWI----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp EEEEETT----TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred cEEEEec----CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 4544321 233556666677888888765543333333333456778876 566665553 367888877543222
Q ss_pred EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCce
Q 010816 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKT 354 (500)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~ 354 (500)
..+...-.+-..+++++.. ....++-+..+.|..+|..... ...
T Consensus 239 ~~~~~~l~~P~glavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~ 282 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKT 282 (400)
T ss_dssp EEECSSCSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCC-CEE
T ss_pred EEEECCCCceEEEEEEeCC-----------------------------------CEEEEEECCCCEEEEEeCCCCc-cEE
Confidence 2222222344556555421 1122333445677777754322 111
Q ss_pred eeec--ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEE
Q 010816 355 RMTG--HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQI 408 (500)
Q Consensus 355 ~~~~--h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~ 408 (500)
.... .-.....|++. .+.++.+-...+.|..+|..+|+.+..+.........+
T Consensus 283 ~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 283 ILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEE
T ss_pred EEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceE
Confidence 2221 12334566663 34555566667889999988887776665443333443
No 282
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.76 E-value=0.32 Score=44.33 Aligned_cols=230 Identities=10% Similarity=-0.022 Sum_probs=119.9
Q ss_pred CCcEEEEeCCCCc-eeEEecCCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 129 DTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHL-VSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 129 d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
...|+..++.+.. ...........+..++|.+.+..| .+-...+.|..+++..+..........-....++++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~--- 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW--- 88 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET---
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc---
Confidence 4568888887653 111111112346789999865555 45556788999998765321111111111223444432
Q ss_pred CCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecCCc
Q 010816 207 NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGHGH 282 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~~~ 282 (500)
.....+++-...+.|.+.++........+......-..+++.+ .+.|+.+.. .+.|...++.. .....+ ...-.
T Consensus 89 -~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~l~ 166 (318)
T 3sov_A 89 -LGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINSEIY 166 (318)
T ss_dssp -TTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECSSCS
T ss_pred -CCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEECCCC
Confidence 1233455556667888888764432222223333446677775 466666553 46787777643 222222 22222
Q ss_pred eEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCc
Q 010816 283 WVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQL 362 (500)
Q Consensus 283 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~ 362 (500)
.-..++++++. ....++-+..+.|..+|..... ......+....
T Consensus 167 ~Pnglavd~~~-----------------------------------~~lY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~ 210 (318)
T 3sov_A 167 WPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTN-RQAVVKGSLPH 210 (318)
T ss_dssp CEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEECSCCSC
T ss_pred CccEEEEeccC-----------------------------------CEEEEEECCCCEEEEEcCCCCc-eEEEecCCCCC
Confidence 33455555421 1223344455677777754321 11122222344
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
...+++. .+.++.+-...+.|..++..+|+....+..
T Consensus 211 P~glav~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 211 PFALTLF-EDILYWTDWSTHSILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred ceEEEEe-CCEEEEEecCCCeEEEEECCCCCceEEEeC
Confidence 5677775 344555555678899999888876555543
No 283
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.70 E-value=0.35 Score=44.00 Aligned_cols=227 Identities=13% Similarity=0.035 Sum_probs=122.6
Q ss_pred CcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCC---CcccccccCcccceEEEEeeeee
Q 010816 130 TTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPVH 205 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~~ 205 (500)
..|+..|+.+........ ....+..++|.++++.|+ +-...+.|..+++... ......+...-....++++.+.
T Consensus 10 ~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~- 87 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI- 87 (316)
T ss_dssp SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT-
T ss_pred CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec-
Confidence 468888887765443333 344578999998765555 4455689999998751 1111111111122344544321
Q ss_pred cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeCC--CeEEEEeCCCCeeEEEe-ecCC
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQD--CTIKVWETTQGKLIREL-KGHG 281 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~d--g~i~lwd~~~~~~~~~~-~~~~ 281 (500)
....+++-...+.|.+.|+........+.........++.++ ++.|+.+... +.|..+++. |.....+ ...-
T Consensus 88 ---~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~ 163 (316)
T 1ijq_A 88 ---HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENI 163 (316)
T ss_dssp ---TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSC
T ss_pred ---CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCC
Confidence 223455656778888888865433322332223456778876 5666665543 678777764 3333332 2222
Q ss_pred ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--c
Q 010816 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG--H 359 (500)
Q Consensus 282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~--h 359 (500)
..-..++++++. ....++-+..+.|..+|..... ....... .
T Consensus 164 ~~P~gla~d~~~-----------------------------------~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~ 207 (316)
T 1ijq_A 164 QWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDEKR 207 (316)
T ss_dssp SCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECTTT
T ss_pred CCceEEEEeccC-----------------------------------CEEEEEECCCCeEEEEecCCCc-eEEEeecCCc
Confidence 334455555421 1223344455677777765321 1111111 1
Q ss_pred cCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 360 QQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
......+++. .+.++.+-...+.|..++..+|+.+..+.
T Consensus 208 ~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 208 LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 2345677774 35566666667889999988887665554
No 284
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.51 E-value=0.48 Score=43.30 Aligned_cols=144 Identities=12% Similarity=0.187 Sum_probs=80.0
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCC----CCE--E--EEEeC--CCeEEEEeC--CCCCccc
Q 010816 119 DGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSAD----GKH--L--VSGSK--AGELQCWDP--QTGKPSG 186 (500)
Q Consensus 119 ~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~----~~~--l--~s~~~--d~~i~~wd~--~~~~~~~ 186 (500)
...+++.....+.+.+||+ +++.+..+.. +.+..|..-|+ |+. + ++.-. +++|++|++ .++....
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~ 115 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence 4456777778889999999 7777777653 45666666552 322 2 33334 578999955 4443211
Q ss_pred c-----cccCcccceEEEEeeeeecCCCCc-eEEEEeCCCcEEEEECC-------CCeEEEEecCccccEEEEEeC-CCC
Q 010816 187 N-----PLSGHKKWITGISWEPVHLNAPCR-RFVSASKDGDARIWDVS-------LRKCVICLSGHTLAVTCVKWG-GDG 252 (500)
Q Consensus 187 ~-----~~~~~~~~v~~~~~~~~~~~~~~~-~~~s~s~dg~v~iwd~~-------~~~~~~~~~~h~~~v~~~~~~-~~~ 252 (500)
. ++..-...+.+++.... ..... +++....+|.+..|++. +.+.+..+.-.. .+..+... ..+
T Consensus 116 i~~~~~pv~t~~~~pyGlcly~~--~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs-q~EgcvvDd~~g 192 (355)
T 3amr_A 116 MTDPDHPIATAINEVYGFTLYHS--QKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS-QTEGMAADDEYG 192 (355)
T ss_dssp CSCTTSCEECCCSSCCCEEEEEC--TTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS-CEEEEEEETTTT
T ss_pred ccccccCcCCCCCCeeEEEEEec--CCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC-CcceEEEcCCCC
Confidence 0 00011133444554110 01122 46667778999999883 234455554333 33344444 356
Q ss_pred eEEEEeCCCeEEEEeC
Q 010816 253 VIYTGSQDCTIKVWET 268 (500)
Q Consensus 253 ~l~t~~~dg~i~lwd~ 268 (500)
.|+.+-+|.-|..++.
T Consensus 193 ~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 193 RLYIAEEDEAIWKFSA 208 (355)
T ss_dssp EEEEEETTTEEEEEEC
T ss_pred eEEEecccceEEEEeC
Confidence 7888888866555553
No 285
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.39 E-value=0.44 Score=41.59 Aligned_cols=205 Identities=10% Similarity=0.155 Sum_probs=106.1
Q ss_pred ecCccccEEEEEeCCC-CeEEE-EeCCCeEEEEeCCCCeeEEEeecC-CceEEEEEecCcceeeeccccCCCCCCCCHHH
Q 010816 236 LSGHTLAVTCVKWGGD-GVIYT-GSQDCTIKVWETTQGKLIRELKGH-GHWVNSLALSTEYALRTGAFDHTGKQYSSPEE 312 (500)
Q Consensus 236 ~~~h~~~v~~~~~~~~-~~l~t-~~~dg~i~lwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (500)
+.+-...+..++|+++ +.|++ ...++.|...|.. ++.++.+.-. ......+++.++.
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g------------------- 81 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDN------------------- 81 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTT-------------------
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCC-------------------
Confidence 3455567889999875 45554 6678889999987 8877766422 1233344433321
Q ss_pred HHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCC--ceee------ecccCcEEEEEECCCCCEEEEEeCCCcE
Q 010816 313 MKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQP--KTRM------TGHQQLVNHVYFSPDGQWVASASFDKSI 384 (500)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~--~~~~------~~h~~~v~~l~~sp~g~~lasgs~Dg~i 384 (500)
..+++.-.++.+.++++...... .... .........|+|+|+++.|.++......
T Consensus 82 -----------------~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~ 144 (255)
T 3qqz_A 82 -----------------QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI 144 (255)
T ss_dssp -----------------EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE
T ss_pred -----------------EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc
Confidence 12233333455666554332210 0011 1123346899999998766666655444
Q ss_pred EEEeCCC---CceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCC-EEEEEECCCcEEEEECCC
Q 010816 385 KLWNGTT---GKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSR-LLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 385 ~lwd~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~s~s~d~~v~iwd~~~ 460 (500)
.+|.... ...+..... .. +.... . -...+.+++.|... +++.....+.+.++|...
T Consensus 145 ~i~~~~g~~~~~~l~i~~~-----------~~--~~~~~------~-~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 145 EVYKVNGLLSSNELHISKD-----------KA--LQRQF------T-LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp EEEEEESTTCSSCCEEEEC-----------HH--HHHTC------C-SSCCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred eEEEEcccccCCceeeecc-----------hh--hcccc------c-cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCC
Confidence 5554321 111111100 00 00000 0 01134456666654 444444556777787654
Q ss_pred ccccc--ccc-Cc------ccCEEEEEEcCCCCEEEEEeCCCcEEEec
Q 010816 461 QKLKQ--DLP-GH------ADEVFAVDWSPDGEKVASGGKDRVLKLWM 499 (500)
Q Consensus 461 ~~~~~--~~~-~h------~~~V~~l~~s~dg~~l~s~~~D~~v~iW~ 499 (500)
. .+. .+. +. ...--.++|.++|+ |..+++-+.++.+.
T Consensus 205 ~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 205 E-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp C-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred C-EEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 3 322 222 21 12456899999997 66668878777664
No 286
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.27 E-value=0.51 Score=44.21 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=89.0
Q ss_pred cCCCCeEEEEeCCCcEEEEeCCCCceeEEecCC----CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccc-----
Q 010816 117 SPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGH----KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGN----- 187 (500)
Q Consensus 117 sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h----~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~----- 187 (500)
..+|..++.+- ++.||.-++........+... -..|..+..||+|++||..+ +..|.+-.+-.+.....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccc
Confidence 35666666653 478888888754444443322 22577899999999998875 55777776653221100
Q ss_pred --------ccc----CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC--eEEEEec---------CccccEE
Q 010816 188 --------PLS----GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR--KCVICLS---------GHTLAVT 244 (500)
Q Consensus 188 --------~~~----~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~--~~~~~~~---------~h~~~v~ 244 (500)
.+. .....|..+.|+|...+ +..+++-..|+.||+||+... +.. .+. .....|.
T Consensus 107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~--ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYR--DSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HTTEEEEEEGGGCC--CCCCEEEEEECTTBGG--GCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccceeEEEcCCcccCCCCceeEEEeccccCC--CCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 010 12456899999997754 346888889999999999752 111 232 2225677
Q ss_pred EEEeCCCCe-EEE--EeCCCeEEE
Q 010816 245 CVKWGGDGV-IYT--GSQDCTIKV 265 (500)
Q Consensus 245 ~~~~~~~~~-l~t--~~~dg~i~l 265 (500)
+++|.+++. |+. .+..|.|.-
T Consensus 184 S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 184 DLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEEcCCCcEEEEEecCCCCCEEE
Confidence 888887662 444 335565543
No 287
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.23 E-value=0.071 Score=54.58 Aligned_cols=228 Identities=12% Similarity=0.022 Sum_probs=110.3
Q ss_pred CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCC---CcccccccCcccceEEEEeeee
Q 010816 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTG---KPSGNPLSGHKKWITGISWEPV 204 (500)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~---~~~~~~~~~~~~~v~~~~~~~~ 204 (500)
...|+..++.+......... ...+..|+|.+.+..|+.+. ..+.|+.+++... ......+........++++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35677777766543322222 23456789998766666554 4578999988651 1111111111112233443321
Q ss_pred ecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecC
Q 010816 205 HLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGH 280 (500)
Q Consensus 205 ~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~ 280 (500)
....+++-...+.|.+.++........+.........+++.+ .+.|+.+.. .+.|..+++.. .....+ ...
T Consensus 464 ----~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~ 538 (699)
T 1n7d_A 464 ----HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN 538 (699)
T ss_dssp ----SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSS
T ss_pred ----CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCC
Confidence 223455555677888888765443332222222234566665 345554443 25666666532 211111 111
Q ss_pred CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeee--c
Q 010816 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMT--G 358 (500)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~--~ 358 (500)
...-..++++++ .....++-+..+.|..+++.... ...... +
T Consensus 539 l~~PnGlavd~~-----------------------------------~~~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~ 582 (699)
T 1n7d_A 539 IQWPNGITLDLL-----------------------------------SGRLYWVDSKLHSISSIDVNGGN-RKTILEDEK 582 (699)
T ss_dssp CSSCCCEEECTT-----------------------------------TCCEEEEETTTTEEEEECSSSSC-CEEECCCSS
T ss_pred CCCccEEEEecc-----------------------------------CCEEEEEecCCCeEEEEccCCCc-eEEEEecCC
Confidence 112223333322 12234444556677777764321 111111 1
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
.......|++..+ .++++....+.|..++..+|+.+.++.
T Consensus 583 ~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 583 RLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred cCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 1112234455443 455555566889999988887766554
No 288
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=96.13 E-value=0.76 Score=41.75 Aligned_cols=180 Identities=10% Similarity=-0.065 Sum_probs=88.7
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeE-EEEecCccccEEEEEeC
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKC-VICLSGHTLAVTCVKWG 249 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~-~~~~~~h~~~v~~~~~~ 249 (500)
...|+..++.........+........++.|.+. ....+.+-...+.|+.+++..... ...+.........+++.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~----~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd 87 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS----HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 87 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGG----GTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeC----CCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEE
Confidence 4678888887553111111112233456777653 223555656677888888765421 11111111122344554
Q ss_pred C-CCeE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCC
Q 010816 250 G-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGN 327 (500)
Q Consensus 250 ~-~~~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (500)
. ++.| ++-...+.|.++++........+......-..+++.+..
T Consensus 88 ~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~---------------------------------- 133 (318)
T 3sov_A 88 WLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS---------------------------------- 133 (318)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG----------------------------------
T ss_pred cCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC----------------------------------
Confidence 3 3444 444556788888875432222222222233445554321
Q ss_pred CCcEEEEee--CCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEE-EeCCCcEEEEeCCC
Q 010816 328 APERLVSGS--DDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVAS-ASFDKSIKLWNGTT 391 (500)
Q Consensus 328 ~~~~~~s~s--~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~las-gs~Dg~i~lwd~~~ 391 (500)
..+.... ..+.|...++.... ........-...+.|+++|++..|.. -+..+.|..+|+..
T Consensus 134 --g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 134 --GFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp --TEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred --CEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 1222222 24556666543221 11111222345789999997665554 45567899999864
No 289
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.89 E-value=2.6 Score=45.75 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=47.5
Q ss_pred cccEEEEEEcCC------CCeEEEEeC-CCcEEEEeCCCCceeEEec-CCCCCEEEEEEc--CCCCEEEEEeCCCeEEEE
Q 010816 108 TEAVLSVAFSPD------GRQLASGSG-DTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWS--ADGKHLVSGSKAGELQCW 177 (500)
Q Consensus 108 ~~~V~~~~~sp~------~~~lat~~~-d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s--~~~~~l~s~~~d~~i~~w 177 (500)
.+.|.|+++.|. ++++|.|.. |++|+|+++.+-+.+.... +-+....++.+. ....+|..|-.||.+.-+
T Consensus 553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence 357999999864 368999997 9999999998765553321 111233344332 233578888899987655
Q ss_pred eC
Q 010816 178 DP 179 (500)
Q Consensus 178 d~ 179 (500)
.+
T Consensus 633 ~~ 634 (1158)
T 3ei3_A 633 GL 634 (1158)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 290
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=95.80 E-value=1.1 Score=40.71 Aligned_cols=215 Identities=10% Similarity=-0.054 Sum_probs=106.5
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEE-eCCCeEEEEeCCCC---eeEEE-eecCCceEEEEEecCc
Q 010816 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTG-SQDCTIKVWETTQG---KLIRE-LKGHGHWVNSLALSTE 292 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~-~~dg~i~lwd~~~~---~~~~~-~~~~~~~v~~~~~~~~ 292 (500)
...|+..|+........+.. ......++|++ ++.|+.+ ...+.|..+++... ..... +.........+++.+.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp BSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 35688888877654443332 34466788876 3555554 45688988887651 11111 1111111223333211
Q ss_pred ceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCC
Q 010816 293 YALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDG 372 (500)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g 372 (500)
.+...++-...+.|.+.++... ...............++++|.+
T Consensus 88 -----------------------------------~~~ly~~d~~~~~I~~~~~~g~-~~~~~~~~~~~~P~~iavdp~~ 131 (316)
T 1ijq_A 88 -----------------------------------HSNIYWTDSVLGTVSVADTKGV-KRKTLFRENGSKPRAIVVDPVH 131 (316)
T ss_dssp -----------------------------------TTEEEEEETTTTEEEEEETTSS-SEEEEEECTTCCEEEEEEETTT
T ss_pred -----------------------------------CCeEEEEECCCCEEEEEeCCCC-ceEEEEECCCCCcceEEeCCCC
Confidence 1123344455677777775432 1112222233567899999966
Q ss_pred CEEEEEeCC--CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEEE-C
Q 010816 373 QWVASASFD--KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSGS-K 449 (500)
Q Consensus 373 ~~lasgs~D--g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~s-~ 449 (500)
..|..+... +.|...++. |.....+.... -.....+++++++..|+.+. .
T Consensus 132 g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~--------------------------~~~P~gla~d~~~~~lY~~D~~ 184 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN--------------------------IQWPNGITLDLLSGRLYWVDSK 184 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEECSS--------------------------CSCEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEccCCCCeEEEEcCC-CCCeEEEEECC--------------------------CCCceEEEEeccCCEEEEEECC
Confidence 555444432 677777764 32222221100 00112346787776666555 5
Q ss_pred CCcEEEEECCCcccccccc--CcccCEEEEEEcCCCCEEEEEeCCCcEEEe
Q 010816 450 DSTLKVWDIRTQKLKQDLP--GHADEVFAVDWSPDGEKVASGGKDRVLKLW 498 (500)
Q Consensus 450 d~~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s~~~D~~v~iW 498 (500)
.+.|..+|+.......... +......++++.. +..+++-...++|...
T Consensus 185 ~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~~-~~ly~~d~~~~~V~~~ 234 (316)
T 1ijq_A 185 LHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSA 234 (316)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred CCeEEEEecCCCceEEEeecCCccCCcEEEEEEC-CEEEEEECCCCeEEEE
Confidence 5789999986532211111 1123345667642 3344444445566554
No 291
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.80 E-value=1.1 Score=40.65 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=52.2
Q ss_pred cEEEEEECCCCCEEEEEeCC-CcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 362 LVNHVYFSPDGQWVASASFD-KSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~D-g~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
..+.++..++|+..++++.- +.|...+.... .+..+- + ..+.. ........+++.|+
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~--------~--------~~~~~-----~~~~G~nGIv~~pd 195 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFA--------W--------ESGNG-----GQRPGYSGITFDPH 195 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEE--------E--------CCCCS-----SSCCSCSEEEEETT
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeee--------e--------cCCCc-----ccccCcceEEEeCC
Confidence 48899999999999999988 88877776533 222110 0 00000 01123345578999
Q ss_pred CCEEEEEECCCcEEEEECCC
Q 010816 441 SRLLLSGSKDSTLKVWDIRT 460 (500)
Q Consensus 441 ~~~l~s~s~d~~v~iwd~~~ 460 (500)
|..|++...++.+..+|+..
T Consensus 196 g~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 196 SNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TTEEEEESSSSSEEEEECSS
T ss_pred CCEEEEEcCCCeEEEEcCCC
Confidence 99998887799999999874
No 292
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.75 E-value=0.59 Score=44.61 Aligned_cols=152 Identities=9% Similarity=0.052 Sum_probs=82.2
Q ss_pred EEEEeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhh
Q 010816 244 TCVKWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERY 321 (500)
Q Consensus 244 ~~~~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (500)
..+++++ ++.|+.+...+.|+.+|+..+....... .......++++++.
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G---------------------------- 190 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEA---------------------------- 190 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTS----------------------------
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCC----------------------------
Confidence 4567775 4677777666889999987765433322 33334455555432
Q ss_pred hhhcCCCCcEE-EEeeCCC----eEEEEcCCCCCCCceeeecccCcEEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceE
Q 010816 322 NKIKGNAPERL-VSGSDDF----TMFLWEPAVSKQPKTRMTGHQQLVNHVYFSP-DGQWVASASFDKSIKLWNGTTGKFV 395 (500)
Q Consensus 322 ~~~~~~~~~~~-~s~s~d~----~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp-~g~~lasgs~Dg~i~lwd~~~~~~~ 395 (500)
..+ ++...++ .+...+..........+. .......++++| +|.++++-..++.|+.++..++...
T Consensus 191 --------~~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~ 261 (430)
T 3tc9_A 191 --------DSMIITNDQNNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT 261 (430)
T ss_dssp --------SEEEEEECCSCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE
T ss_pred --------CEEEEEeCCCCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 222 2222111 233333221111111111 123356788999 7777777667889999998766542
Q ss_pred EEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCCCEEEEE-ECCCcEEEEECC
Q 010816 396 AVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADSRLLLSG-SKDSTLKVWDIR 459 (500)
Q Consensus 396 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~s~-s~d~~v~iwd~~ 459 (500)
........ .....++++|+|++|+.+ ...+.|..++..
T Consensus 262 ~~~~~~~~--------------------------~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 262 PLFTIQDS--------------------------GWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEECSSS--------------------------SCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred EEEEcCCC--------------------------CcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 21111000 011234789999955554 456788887754
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=95.64 E-value=1.2 Score=40.25 Aligned_cols=152 Identities=7% Similarity=0.092 Sum_probs=86.1
Q ss_pred EEEEeeeeecCCCCceEEEEe-CCCcEEEEECCCCeEEE-EecC----c--cccEEEEEe---CCCCeEEEEeC------
Q 010816 197 TGISWEPVHLNAPCRRFVSAS-KDGDARIWDVSLRKCVI-CLSG----H--TLAVTCVKW---GGDGVIYTGSQ------ 259 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s-~dg~v~iwd~~~~~~~~-~~~~----h--~~~v~~~~~---~~~~~l~t~~~------ 259 (500)
.++.|.+. . .+|..++ ..++|..||...+.... .+.+ . ...+..+.| .+++.|+....
T Consensus 16 E~~~wd~~----~-g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 16 EDTIYDRT----R-QVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp SCEEEETT----T-TEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cCccCcCC----C-CEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 45666541 2 3455555 78999999987554332 2322 1 123578889 57776655332
Q ss_pred --------CCeEEEEeCC---CCeeEEEeecC-------------CceEEEEEecCcceeeeccccCCCCCCCCHHHHHH
Q 010816 260 --------DCTIKVWETT---QGKLIRELKGH-------------GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKK 315 (500)
Q Consensus 260 --------dg~i~lwd~~---~~~~~~~~~~~-------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (500)
++.|..||+. +++.+....-. ......+++.++
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~----------------------- 147 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRD----------------------- 147 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTT-----------------------
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCC-----------------------
Confidence 6779999998 77665443210 012344444443
Q ss_pred HHHHhhhhhcCCCCcEEEEeeCC-CeEEEEcCCCCCCCceee------ecccCcEEEEEECCCCCEEEEEeCCCcEEEEe
Q 010816 316 AALERYNKIKGNAPERLVSGSDD-FTMFLWEPAVSKQPKTRM------TGHQQLVNHVYFSPDGQWVASASFDKSIKLWN 388 (500)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~s~s~d-~~v~~wd~~~~~~~~~~~------~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd 388 (500)
++..++++.. +.|...++.... ...+ .......+.++++|+|++|++...+|.+..+|
T Consensus 148 -------------GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 148 -------------GNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp -------------SCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred -------------CCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 2333444444 444444432211 1100 01112356899999998888776699999999
Q ss_pred CCC
Q 010816 389 GTT 391 (500)
Q Consensus 389 ~~~ 391 (500)
+.+
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 874
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.60 E-value=2.5 Score=43.65 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=120.6
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEeCCCCCc---ccccccCcccceEEEEeee
Q 010816 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLV-SGSKAGELQCWDPQTGKP---SGNPLSGHKKWITGISWEP 203 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~-s~~~d~~i~~wd~~~~~~---~~~~~~~~~~~v~~~~~~~ 203 (500)
....|+..++......... .....+..|+|.+....|+ +-...+.|+.+++..... ....+........++++.+
T Consensus 402 n~~~Ir~i~l~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 3456787787665433333 3345678899998655554 545567898888764211 1111111122234454433
Q ss_pred eecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCC-CeEEEEeCC--CeEEEEeCCCCeeEEEeecC
Q 010816 204 VHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGD-GVIYTGSQD--CTIKVWETTQGKLIRELKGH 280 (500)
Q Consensus 204 ~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~t~~~d--g~i~lwd~~~~~~~~~~~~~ 280 (500)
. ....+++-...+.|.+.++........+.........|++.+. +.|+..... +.|...++........+...
T Consensus 481 ~----~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~ 556 (791)
T 3m0c_C 481 I----HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN 556 (791)
T ss_dssp T----TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS
T ss_pred c----CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC
Confidence 1 2245666677788988888755433333333344667888764 667666532 67888887543332222323
Q ss_pred CceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeec--
Q 010816 281 GHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTG-- 358 (500)
Q Consensus 281 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~-- 358 (500)
..+-..|++.+.. +...++-.....|...++.... .......
T Consensus 557 l~~P~GLavD~~~-----------------------------------~~LYwaD~~~~~I~~~d~dG~~-~~~v~~~~~ 600 (791)
T 3m0c_C 557 IQWPNGITLDLLS-----------------------------------GRLYWVDSKLHSISSIDVNGGN-RKTILEDEK 600 (791)
T ss_dssp CSCEEEEEEETTT-----------------------------------TEEEEEETTTTEEEEEETTSCS-CEEEEECTT
T ss_pred CCCceEEEEecCC-----------------------------------CeEEEEeCCCCcEEEEecCCCc-eEEEecCCC
Confidence 3345555555321 1122333344566666654322 2222222
Q ss_pred ccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 359 HQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 359 h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
.-.....|++.. +.++++-...+.|...|..+|+.+.++..
T Consensus 601 ~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 601 RLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEeec
Confidence 112344666632 34445555567888888878876655543
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.30 E-value=2.2 Score=41.15 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=85.7
Q ss_pred cEEEEEEcCC-CCeEEEE-eCCCcEEEEeCCCCceeEEecC---CCCCEEEEEE-------cCCCCEEEEEeCCC-----
Q 010816 110 AVLSVAFSPD-GRQLASG-SGDTTVRLWDLNTQTPMFKCTG---HKNWVLCIAW-------SADGKHLVSGSKAG----- 172 (500)
Q Consensus 110 ~V~~~~~sp~-~~~lat~-~~d~~i~iwd~~~~~~~~~~~~---h~~~v~~v~~-------s~~~~~l~s~~~d~----- 172 (500)
.-..|+|+|. ...|..+ ...+.|++.|.+++........ .......++| +++|+.|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 4668999993 4444444 4456788889887655433322 1235889999 99999777666543
Q ss_pred --eEEEEeCCC-CCccc----ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECC-------CCeE------
Q 010816 173 --ELQCWDPQT-GKPSG----NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVS-------LRKC------ 232 (500)
Q Consensus 173 --~i~~wd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~-------~~~~------ 232 (500)
.|.+.+... |.... ..+... ..-.+++..| .....+++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp----~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHP----INGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECT----TTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcC----CCCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 255665433 22210 011100 0112222222 123456666677889999986 4432
Q ss_pred --------EEEecCccccEEEEEeCCCCe-EEEE-eCCCeEEEEeC
Q 010816 233 --------VICLSGHTLAVTCVKWGGDGV-IYTG-SQDCTIKVWET 268 (500)
Q Consensus 233 --------~~~~~~h~~~v~~~~~~~~~~-l~t~-~~dg~i~lwd~ 268 (500)
+... +....-..++|++++. |+.+ +..+.|+.++.
T Consensus 295 ~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 295 NNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp GCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 1112 2223346789998874 4444 46678888553
No 296
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.07 E-value=1.4 Score=41.22 Aligned_cols=125 Identities=12% Similarity=0.081 Sum_probs=71.0
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC-
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD- 440 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~- 440 (500)
.+..+..||+|.+||..+. ..|.|-.+..+.....-.+-.+++..-.+ .... . ....+..+..+-|+|-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty------~l~~--~-~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHY------SIDE--E-EVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEE------EGGG--C-C--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEE------EcCC--c-ccCCCCceeEEEecccc
Confidence 4678999999999998855 47888887643210000000011110000 0000 0 0001122344467775
Q ss_pred --CCEEEEEECCCcEEEEECCCcc--cc---c-----cccCcccCEEEEEEcCCCCEEEEEe--CCCcEE
Q 010816 441 --SRLLLSGSKDSTLKVWDIRTQK--LK---Q-----DLPGHADEVFAVDWSPDGEKVASGG--KDRVLK 496 (500)
Q Consensus 441 --~~~l~s~s~d~~v~iwd~~~~~--~~---~-----~~~~h~~~V~~l~~s~dg~~l~s~~--~D~~v~ 496 (500)
+..|++-..|+.||+||+.... .. + .+......|.+++|++++-.|...+ ..|-|+
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 5689999999999999997521 11 0 1122336789999999888777755 667664
No 297
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.03 E-value=2 Score=39.16 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=68.3
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEE-eCCCcEEEEECCCCeEEEEecC---
Q 010816 163 KHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSA-SKDGDARIWDVSLRKCVICLSG--- 238 (500)
Q Consensus 163 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~-s~dg~v~iwd~~~~~~~~~~~~--- 238 (500)
.+++.++.||.|.-.|.++|+..-........++....- +. ...+...++.. +.||.+..++..++.....+.-
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~-~~-~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE-PS-RLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC-SC-TTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC-Cc-cccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 478889999999999999887543221111111111110 00 00122333333 6899999999888754433221
Q ss_pred -ccccEEE---EEe------CCCCeEEEEeCCCeEEEEeCCCCeeEEEeec
Q 010816 239 -HTLAVTC---VKW------GGDGVIYTGSQDCTIKVWETTQGKLIRELKG 279 (500)
Q Consensus 239 -h~~~v~~---~~~------~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~ 279 (500)
...++.. ... +.++.+++|+.+|.+.-.|..+|+.+..+..
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1112221 000 1467899999999999999999999887753
No 298
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=94.97 E-value=3.4 Score=41.48 Aligned_cols=163 Identities=9% Similarity=-0.018 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCCeEEEE-eCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEeCCCCCccc
Q 010816 110 AVLSVAFSPDGRQLASG-SGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK--AGELQCWDPQTGKPSG 186 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~-~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~--d~~i~~wd~~~~~~~~ 186 (500)
....+++++.+..|..+ ...+.|.+.++............-.....+++.|....|.-... .+.|...++..... .
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~ 159 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T 159 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E
Confidence 45678898876666544 45678999998765433223233345789999986555555442 46777777653321 1
Q ss_pred ccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEE
Q 010816 187 NPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVW 266 (500)
Q Consensus 187 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lw 266 (500)
.... .-..-.++++.+. ..+.+++-...+.|...|+..... ..+......-..+++..+..+++-...+.|...
T Consensus 160 ~l~~-~~~~P~GlalD~~----~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 160 TLVP-NVGRANGLTIDYA----KRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERA 233 (628)
T ss_dssp EEEC-SCSSEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTTTEEEEE
T ss_pred EEEC-CCCCcceEEEccc----cCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCCCEEEEE
Confidence 1111 1223445555431 223455556667888888754322 122211122235555554444444457889999
Q ss_pred eCCCCeeEEEeec
Q 010816 267 ETTQGKLIRELKG 279 (500)
Q Consensus 267 d~~~~~~~~~~~~ 279 (500)
|..+|+....+..
T Consensus 234 dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 234 NKTSGQNRTIIQG 246 (628)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEec
Confidence 9877766555543
No 299
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=94.86 E-value=3.6 Score=41.23 Aligned_cols=231 Identities=10% Similarity=-0.007 Sum_probs=110.1
Q ss_pred CCCcEEEEeCCCCc-eeEEecCCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEeCCCCCcccccccCcccceEEEEeeeee
Q 010816 128 GDTTVRLWDLNTQT-PMFKCTGHKNWVLCIAWSADGKHLVSGS-KAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVH 205 (500)
Q Consensus 128 ~d~~i~iwd~~~~~-~~~~~~~h~~~v~~v~~s~~~~~l~s~~-~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 205 (500)
....|+.-++.... ........-..+..++|++.+..|+-+. ..+.|..+++.........+...-....++++.+.
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~- 94 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL- 94 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETT-
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEec-
Confidence 34567888876542 1111222344578899998766666544 46788888886542111112211123455555432
Q ss_pred cCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCC-CCeEEEEeC--CCeEEEEeCCCCeeEEEe-ecCC
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGG-DGVIYTGSQ--DCTIKVWETTQGKLIREL-KGHG 281 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~t~~~--dg~i~lwd~~~~~~~~~~-~~~~ 281 (500)
....+++-...+.|.+.++............-..-..+++.+ ++.|+.... .+.|...++. |.....+ ....
T Consensus 95 ---~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~ 170 (619)
T 3s94_A 95 ---GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINSEI 170 (619)
T ss_dssp ---TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSC
T ss_pred ---CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECC-CCceEEEEeCCC
Confidence 223556666678888888865433222222222334566765 366665553 3456555553 2222222 2222
Q ss_pred ceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeCCCeEEEEcCCCCCCCceeeecccC
Q 010816 282 HWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQQ 361 (500)
Q Consensus 282 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~~ 361 (500)
.+-..+++++.. ....++-...+.|...|....... ....+...
T Consensus 171 ~~P~Glald~~~-----------------------------------~~LY~aD~~~~~I~~~~~dG~~~~-~~~~~~~~ 214 (619)
T 3s94_A 171 YWPNGLTLDYEE-----------------------------------QKLYWADAKLNFIHKSNLDGTNRQ-AVVKGSLP 214 (619)
T ss_dssp SSEEEEEEETTT-----------------------------------TEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred CCCcEEEEEccC-----------------------------------CEEEEEeCCCCeEEEecCCCCccE-EEEeCCCC
Confidence 333445544321 112233334456666665422111 11111111
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
....|++..+ .++.+-...+.|...|..+|+....+..
T Consensus 215 ~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~i~~ 252 (619)
T 3s94_A 215 HPFALTLFED-ILYWTDWSTHSILACNKYTGEGLREIHS 252 (619)
T ss_dssp -CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEECCS
T ss_pred CceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEEEec
Confidence 1235666655 4445555677899999888876555543
No 300
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=94.80 E-value=0.11 Score=53.06 Aligned_cols=164 Identities=13% Similarity=-0.033 Sum_probs=90.3
Q ss_pred EEEEEEcCCCCeE-EEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeC-C-CeEEEEeCCCCCcccc
Q 010816 111 VLSVAFSPDGRQL-ASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSK-A-GELQCWDPQTGKPSGN 187 (500)
Q Consensus 111 V~~~~~sp~~~~l-at~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~-d-~~i~~wd~~~~~~~~~ 187 (500)
...|++.+.+..| ++-...+.|.+.++.+......+.........+++.|.+.+|+.+.. . +.|...++.... ...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~ 533 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYS 533 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCE
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeE
Confidence 4567888655444 44456788999998765433333222234567888886655554432 2 677777664321 111
Q ss_pred cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecC--ccccEEEEEeCCCCeEEEEeCCCeEEE
Q 010816 188 PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSG--HTLAVTCVKWGGDGVIYTGSQDCTIKV 265 (500)
Q Consensus 188 ~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~l~t~~~dg~i~l 265 (500)
.....-..-.+++|.|. ....+++-+..+.|..+|+........+.. ....-..+++..+.++++....+.|..
T Consensus 534 l~~~~l~~PnGlavd~~----~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~ 609 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLL----SGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFS 609 (699)
T ss_dssp ESCSSCSSCCCEEECTT----TCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEE
T ss_pred EEeCCCCCccEEEEecc----CCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEE
Confidence 11111123345666542 234556666677888888854322222211 111112334445555666666788999
Q ss_pred EeCCCCeeEEEeec
Q 010816 266 WETTQGKLIRELKG 279 (500)
Q Consensus 266 wd~~~~~~~~~~~~ 279 (500)
+|..+|+.+..+..
T Consensus 610 ~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 610 ANRLTGSDVNLLAE 623 (699)
T ss_dssp EETTTEEEEECCCT
T ss_pred EEccCCCceEEeec
Confidence 99888877766543
No 301
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=94.41 E-value=3.4 Score=38.85 Aligned_cols=180 Identities=12% Similarity=-0.048 Sum_probs=93.2
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCV 246 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~ 246 (500)
...|+..++....... +......+.+++|.+. ....+.+-...+.|+.+++... .....+.........+
T Consensus 91 ~~~I~~i~l~~~~~~~--~~~~~~~~~~l~~d~~----~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~gl 164 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 164 (400)
T ss_dssp TTEEEEECTTSCSCEE--EECSCSCEEEEEEETT----TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEE
T ss_pred cceeEEEccCCcceeE--eccccCcceEEeeeec----cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccE
Confidence 4678888876553321 1222345667887652 2335555556678888887642 1222222222334555
Q ss_pred EeCC-CCeE-EEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 247 KWGG-DGVI-YTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 247 ~~~~-~~~l-~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++.. .+.| ++-...+.|.+.++........+.........+++.+..
T Consensus 165 avD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~------------------------------- 213 (400)
T 3p5b_L 165 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH------------------------------- 213 (400)
T ss_dssp EEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTT-------------------------------
T ss_pred EEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEeccc-------------------------------
Confidence 6553 3444 444567788888876543333333233334555555421
Q ss_pred cCCCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCC
Q 010816 325 KGNAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTG 392 (500)
Q Consensus 325 ~~~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~ 392 (500)
+..+++- +..+.|...++.... ........-...+.|+++|++..|..+ +..+.|..+|+...
T Consensus 214 ----g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 214 ----GFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 278 (400)
T ss_dssp ----TEEEEEECSSSCCEEEEETTSCS-CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ----CeEEEEeCCCCCEEEEEeCCCCc-cEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC
Confidence 1112222 123456666543221 111222233567899999877666555 45678999998654
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.12 E-value=3.5 Score=37.91 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=36.7
Q ss_pred eeEEcCCCCEEEEEE-CCCcEEEEECCC-cccc--ccccCcccCEEEEEEcC-CCCEEEEEeCC
Q 010816 434 LYSWSADSRLLLSGS-KDSTLKVWDIRT-QKLK--QDLPGHADEVFAVDWSP-DGEKVASGGKD 492 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s-~d~~v~iwd~~~-~~~~--~~~~~h~~~V~~l~~s~-dg~~l~s~~~D 492 (500)
.++||||++.|+.+. ..+.|..|++.. +++. +.+. ..+..-.++..+ +|+..+++..+
T Consensus 225 Gia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEEESC
T ss_pred cceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCCCceEEEeCCCCcEEEEecCC
Confidence 357899998877765 568899999863 3221 1221 123345677888 58877766543
No 303
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=94.10 E-value=6.3 Score=40.75 Aligned_cols=181 Identities=12% Similarity=-0.051 Sum_probs=89.1
Q ss_pred CCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCC----eEEEEecCccccEEEE
Q 010816 171 AGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLR----KCVICLSGHTLAVTCV 246 (500)
Q Consensus 171 d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~----~~~~~~~~h~~~v~~~ 246 (500)
...|+..++....... +......+.++.|.+. ....+++-...+.|+.+++... .....+.........+
T Consensus 403 ~~~Ir~i~l~~~~~~~--l~~~~~~~~gl~~d~~----~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GL 476 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS--LIPNLRNVVALDTEVA----SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL 476 (791)
T ss_dssp BSSEEEECTTSCCCEE--EECSCSSEEEEEEETT----TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEE
T ss_pred ccceeEeeccCCccee--eecCCCceEEEeeccc----CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCccee
Confidence 4567777765443221 1222334566666542 2345566666677888887642 1122222122223344
Q ss_pred EeCC--CCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhh
Q 010816 247 KWGG--DGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKI 324 (500)
Q Consensus 247 ~~~~--~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (500)
++.. ..++++-...+.|.+.++........+.........|++.+..
T Consensus 477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~------------------------------- 525 (791)
T 3m0c_C 477 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVH------------------------------- 525 (791)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTT-------------------------------
T ss_pred eeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCC-------------------------------
Confidence 5443 3344555567889998876443322222233334566665431
Q ss_pred cCCCCcEEEEeeC-CCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCCc
Q 010816 325 KGNAPERLVSGSD-DFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTGK 393 (500)
Q Consensus 325 ~~~~~~~~~s~s~-d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~~ 393 (500)
+..+++-.. .+.|...++... .........-...+.|++++.+..|..+ ...+.|...++....
T Consensus 526 ----g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~ 591 (791)
T 3m0c_C 526 ----GFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 591 (791)
T ss_dssp ----TEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ----CCEEEecCCCCCeEEEEecCCC-ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc
Confidence 111222212 245555554322 1111222233568899999876655554 445678888886543
No 304
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=93.97 E-value=5.7 Score=39.86 Aligned_cols=181 Identities=9% Similarity=-0.074 Sum_probs=91.3
Q ss_pred CCCeEEEEeCCCCCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEe
Q 010816 170 KAGELQCWDPQTGKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKW 248 (500)
Q Consensus 170 ~d~~i~~wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~ 248 (500)
..+.|+..++.+...... ++.+ -....++.|.+. ....+.+-..++.|+.+++........+.........+++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~l~~d~~----~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAv 87 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTG-VKEASALDFDVT----DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAV 87 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCS-CSCEEEEEEETT----TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred eCCcEEEEECCCCCcceEEEcCC-CCceEEEEEECC----CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEE
Confidence 456788888875432211 1222 234567777652 2345666667788888887654322222211112233444
Q ss_pred C--CCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcC
Q 010816 249 G--GDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKG 326 (500)
Q Consensus 249 ~--~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (500)
. ....+++-...+.|.+.++........+......-..+++.|..
T Consensus 88 D~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~--------------------------------- 134 (628)
T 4a0p_A 88 DWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAE--------------------------------- 134 (628)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTT---------------------------------
T ss_pred EeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCC---------------------------------
Confidence 3 33344455556788888875432211121222223455555421
Q ss_pred CCCcEEEEe-eCCCeEEEEcCCCCCCCceeeecccCcEEEEEECCCCCEEEEE-eCCCcEEEEeCCCC
Q 010816 327 NAPERLVSG-SDDFTMFLWEPAVSKQPKTRMTGHQQLVNHVYFSPDGQWVASA-SFDKSIKLWNGTTG 392 (500)
Q Consensus 327 ~~~~~~~s~-s~d~~v~~wd~~~~~~~~~~~~~h~~~v~~l~~sp~g~~lasg-s~Dg~i~lwd~~~~ 392 (500)
+..+++- +..+.|...++.... ...+...-...+.|+++++++.|..+ ...+.|...|+...
T Consensus 135 --G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 135 --GFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp --TEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --CeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCC
Confidence 1112221 123455555543221 12222334568899999976655554 45678999998654
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.83 E-value=3.6 Score=37.08 Aligned_cols=208 Identities=9% Similarity=0.134 Sum_probs=115.7
Q ss_pred CCCCeEEEEeCCCeEEEEeCCCCeeEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCC
Q 010816 249 GGDGVIYTGSQDCTIKVWETTQGKLIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNA 328 (500)
Q Consensus 249 ~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (500)
+|...+++--...++.+||+.+...++...-.+.-+ --.|-.
T Consensus 75 nP~~~ViALrag~~LQiFnletK~klks~~~~e~Vv-fWkWis------------------------------------- 116 (365)
T 2xzh_A 75 NPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVT-FWKWIS------------------------------------- 116 (365)
T ss_dssp CSSSSEEEEEETTEEEEEETTTTEEEEEEECSSCEE-EEEECS-------------------------------------
T ss_pred CCCccEEEEecCCeEEEechHHhhhhcceecCCccE-EEEecC-------------------------------------
Confidence 444433332236889999999988777665443222 111111
Q ss_pred CcEEEEeeCCCeEEEEcCCCCCCCceeeeccc----CcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCceEEE
Q 010816 329 PERLVSGSDDFTMFLWEPAVSKQPKTRMTGHQ----QLVNHVYFSPDGQWVASASF-------DKSIKLWNGTTGKFVAV 397 (500)
Q Consensus 329 ~~~~~s~s~d~~v~~wd~~~~~~~~~~~~~h~----~~v~~l~~sp~g~~lasgs~-------Dg~i~lwd~~~~~~~~~ 397 (500)
.+.++-- .+..|+-|++.....|...+..|. ..|..-..+++.++++..+- .|.+.+|..+.+. -..
T Consensus 117 ~~~L~lV-T~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ 194 (365)
T 2xzh_A 117 LNTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQP 194 (365)
T ss_dssp SSEEEEE-ESSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEE
T ss_pred CCeEEEE-cCCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc-cce
Confidence 1122111 245799999876666766665554 34777788999998875443 3678999987643 234
Q ss_pred EeCCcccEEEEEee------eeeeecCCC---Cceeeeec------------------------cccceeeEEcCCCCEE
Q 010816 398 FRGHVGPVYQIRFE------LIYCFRYPS---NFYCVVDM------------------------SCCMSLYSWSADSRLL 444 (500)
Q Consensus 398 ~~~h~~~v~~~~~~------~~~~~~~~~---~~~~~~~~------------------------~~~~~~~~~s~~~~~l 444 (500)
++||.+.-..++.+ .+.|+.... ......+. ..+......|+.-..+
T Consensus 195 ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygvi 274 (365)
T 2xzh_A 195 IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 274 (365)
T ss_dssp ECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEE
T ss_pred eeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEE
Confidence 55555443333221 011110000 00111111 0011112234455677
Q ss_pred EEEECCCcEEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 445 LSGSKDSTLKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 445 ~s~s~d~~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
..-..-|.+++||++++.++..-+--.+.|+..+-+....-++.....|.|.
T Consensus 275 yviTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl 326 (365)
T 2xzh_A 275 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 326 (365)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEE
T ss_pred EEEeCCcEEEEEEcccCcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEE
Confidence 7888889999999999998776554556676655555545566666666553
No 306
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.69 E-value=3.3 Score=36.89 Aligned_cols=51 Identities=24% Similarity=0.299 Sum_probs=28.9
Q ss_pred CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++++++.|+.+ ..+.+||..+.+... .++........+.+ +++.++.||.+
T Consensus 206 ~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (301)
T 2vpj_A 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYD 263 (301)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcC
Confidence 56777777764 468999998765432 22221111122333 56677777765
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.62 E-value=4.9 Score=37.86 Aligned_cols=159 Identities=11% Similarity=0.194 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCCCCCCceeeeccc----CcEEEEEECCCCCEEEEEeC-------CCcEEEEeCCCCceEEEEeCCcccE
Q 010816 337 DDFTMFLWEPAVSKQPKTRMTGHQ----QLVNHVYFSPDGQWVASASF-------DKSIKLWNGTTGKFVAVFRGHVGPV 405 (500)
Q Consensus 337 ~d~~v~~wd~~~~~~~~~~~~~h~----~~v~~l~~sp~g~~lasgs~-------Dg~i~lwd~~~~~~~~~~~~h~~~v 405 (500)
.+..|+-|++.....|...+..|. ..|..-..+++.++++..+- .|.+.+|..+.+. -..++||.+.-
T Consensus 123 T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F 201 (494)
T 1bpo_A 123 TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASF 201 (494)
T ss_dssp CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEE
T ss_pred cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeee
Confidence 356799999876666766665554 34777788999998875432 4678999987653 23456666555
Q ss_pred EEEEee------eeeeecCCC---Cceeeeecc------------------------ccceeeEEcCCCCEEEEEECCCc
Q 010816 406 YQIRFE------LIYCFRYPS---NFYCVVDMS------------------------CCMSLYSWSADSRLLLSGSKDST 452 (500)
Q Consensus 406 ~~~~~~------~~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~s~~~~~l~s~s~d~~ 452 (500)
.+++.+ .+.|+.... .....++.. .+......|+.-..+..-..-|.
T Consensus 202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~ 281 (494)
T 1bpo_A 202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGY 281 (494)
T ss_dssp EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSE
T ss_pred EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCce
Confidence 444332 111211110 011111110 01111223555667788888999
Q ss_pred EEEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 453 LKVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 453 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
+++||++++.++..-+--.+.|+..+-+....-++.....|.|.
T Consensus 282 i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl 325 (494)
T 1bpo_A 282 IHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 325 (494)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEE
T ss_pred EEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEE
Confidence 99999999998776555556777666666656666666666653
No 308
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=93.05 E-value=4.6 Score=35.90 Aligned_cols=135 Identities=15% Similarity=0.200 Sum_probs=63.3
Q ss_pred CcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEeCCCCC---cccc-cccCcccceEE
Q 010816 130 TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA-----GELQCWDPQTGK---PSGN-PLSGHKKWITG 198 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d-----~~i~~wd~~~~~---~~~~-~~~~~~~~v~~ 198 (500)
..+.+||..+.+-.. .+........++. .++++++.|+.+ ..+.+||+.+.+ -... .+.........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~ 108 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA 108 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence 367888877653211 1111111112222 256677777765 468899988765 2111 11111111111
Q ss_pred EEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCeEEE--EecCccccEEEEEeCCCCeEEEEeCC-----CeEEEE
Q 010816 199 ISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVI--CLSGHTLAVTCVKWGGDGVIYTGSQD-----CTIKVW 266 (500)
Q Consensus 199 ~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~l~t~~~d-----g~i~lw 266 (500)
+.. +...++.|+.+ ..+.+||+.+.+-.. .+......-.++.+ .+..++.|+.+ ..+..|
T Consensus 109 ~~~-------~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~ 180 (301)
T 2vpj_A 109 TTL-------GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGGYDGLNILNSVEKY 180 (301)
T ss_dssp EEE-------TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEE
T ss_pred EEE-------CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECCCCCCcccceEEEE
Confidence 111 23466777654 357888987764322 11111111112222 23345556654 457888
Q ss_pred eCCCCeeE
Q 010816 267 ETTQGKLI 274 (500)
Q Consensus 267 d~~~~~~~ 274 (500)
|..+.+..
T Consensus 181 d~~~~~W~ 188 (301)
T 2vpj_A 181 DPHTGHWT 188 (301)
T ss_dssp ETTTTEEE
T ss_pred eCCCCcEE
Confidence 88776543
No 309
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=93.00 E-value=6.8 Score=37.78 Aligned_cols=154 Identities=7% Similarity=0.105 Sum_probs=81.1
Q ss_pred EEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEecCc---cccEEEEEe-------CCCCe-EEEEeCCC----
Q 010816 197 TGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLSGH---TLAVTCVKW-------GGDGV-IYTGSQDC---- 261 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h---~~~v~~~~~-------~~~~~-l~t~~~dg---- 261 (500)
..+++.|.. ....+++....+.|++.|+..+......... ......++| ++++. |+.+...+
T Consensus 142 ~~la~dp~~---~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 142 GRLAFDPLN---KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEETTE---EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CEEEEccCC---CCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 456666520 1234555555567888998887665444322 234778899 87764 66665543
Q ss_pred ---eEEEEeCCC-CeeE-----EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEE
Q 010816 262 ---TIKVWETTQ-GKLI-----RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERL 332 (500)
Q Consensus 262 ---~i~lwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (500)
.|.+++... |... +.+.... ....++++++ .+..+
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-----------------------------------~g~LY 262 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-----------------------------------NGELY 262 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-----------------------------------TCCEE
T ss_pred cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-----------------------------------CCeEE
Confidence 255555332 1211 1111000 0111222221 13455
Q ss_pred EEeeCCCeEEEEcCC-------CCCC-----C-----ceee--ecccCcEEEEEECCCCCEE-EEEeCCCcEEEEeC
Q 010816 333 VSGSDDFTMFLWEPA-------VSKQ-----P-----KTRM--TGHQQLVNHVYFSPDGQWV-ASASFDKSIKLWNG 389 (500)
Q Consensus 333 ~s~s~d~~v~~wd~~-------~~~~-----~-----~~~~--~~h~~~v~~l~~sp~g~~l-asgs~Dg~i~lwd~ 389 (500)
++-..++.|+.+|+. .... + ...+ .+...+...++|+|+|++| ++-+..+.|+.++.
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~ 339 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY 339 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence 666677889999875 2222 0 0111 1223456789999999954 44456678888554
No 310
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=92.98 E-value=2.1 Score=36.17 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=42.1
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce------eEEe--cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP------MFKC--TGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQ 180 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~------~~~~--~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~ 180 (500)
..+..++|+|+|.+-|. .+|.+.-.+..+... -..+ .+... ..++.|.|+|.+.++ .||.|.-++.-
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999999997776 566544444432111 0111 12222 578899999987777 56999888763
No 311
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.40 E-value=8.4 Score=42.22 Aligned_cols=157 Identities=11% Similarity=0.194 Sum_probs=79.6
Q ss_pred CCeEEEEcCCCCCCCceeeecc----cCcEEEEEECCCCCEEEEEe-------CCCcEEEEeCCCCceEEEEeCCcccEE
Q 010816 338 DFTMFLWEPAVSKQPKTRMTGH----QQLVNHVYFSPDGQWVASAS-------FDKSIKLWNGTTGKFVAVFRGHVGPVY 406 (500)
Q Consensus 338 d~~v~~wd~~~~~~~~~~~~~h----~~~v~~l~~sp~g~~lasgs-------~Dg~i~lwd~~~~~~~~~~~~h~~~v~ 406 (500)
+..|+.|++.....|...+..| ...|..-..+++.++++..| -.|.+.+|..+.+.. ..+.||.+.-.
T Consensus 124 ~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~ 202 (1630)
T 1xi4_A 124 DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFA 202 (1630)
T ss_pred CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhh
Confidence 4579999986555555544444 24466777788888887543 347889998765421 11223322211
Q ss_pred EEEee------eeeeecCC---CCceeeeec------------------------cccceeeEEcCCCCEEEEEECCCcE
Q 010816 407 QIRFE------LIYCFRYP---SNFYCVVDM------------------------SCCMSLYSWSADSRLLLSGSKDSTL 453 (500)
Q Consensus 407 ~~~~~------~~~~~~~~---~~~~~~~~~------------------------~~~~~~~~~s~~~~~l~s~s~d~~v 453 (500)
.++.+ .+.|+... .....++.. ..+......|+.-..+..-..-|.|
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~ 282 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYI 282 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceE
Confidence 11110 00010000 000000000 0011112235555677778888999
Q ss_pred EEEECCCccccccccCcccCEEEEEEcCCCCEEEEEeCCCcE
Q 010816 454 KVWDIRTQKLKQDLPGHADEVFAVDWSPDGEKVASGGKDRVL 495 (500)
Q Consensus 454 ~iwd~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s~~~D~~v 495 (500)
++||+.++.++..-+-..+.|+..+-++...-++.....|.|
T Consensus 283 ~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~v 324 (1630)
T 1xi4_A 283 HLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV 324 (1630)
T ss_pred EEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceE
Confidence 999999998876544344555544444333334444444433
No 312
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=91.76 E-value=1.9 Score=36.40 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=59.2
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCCC
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSADS 441 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 441 (500)
.+..++|+|+|.+.|. .+|.++-.+..++.... +.+....|-+.- -.....+.|.|+|
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~-W~~s~t~IG~~G-------------------w~~F~a~~fD~~G 99 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN-WMGRAKKIGNGG-------------------WNQFQFLFFDPNG 99 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC-HHHHCEEEECSC-------------------GGGCSEEEECTTS
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccc-ccccccEecccc-------------------cccceEEEECCCC
Confidence 4568999999997777 67776666654421100 000000000000 0001223578999
Q ss_pred CEEEEEECCCcEEEEECCCcc---cccc---c-cCcccCEEEEEEcCCCCEEEEEeCCCcEE
Q 010816 442 RLLLSGSKDSTLKVWDIRTQK---LKQD---L-PGHADEVFAVDWSPDGEKVASGGKDRVLK 496 (500)
Q Consensus 442 ~~l~s~s~d~~v~iwd~~~~~---~~~~---~-~~h~~~V~~l~~s~dg~~l~s~~~D~~v~ 496 (500)
.+.++ .||.|+-++-.+.. .+.. + .+-=..+..|.|.|+|..-+.. |+.++
T Consensus 100 ~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 100 YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 88887 66988877753311 1111 0 1111467899999999766555 77653
No 313
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=91.70 E-value=3.3 Score=38.13 Aligned_cols=103 Identities=13% Similarity=0.214 Sum_probs=56.5
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeEEcCC
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYSWSAD 440 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 440 (500)
.....++|.|+|+++++ ..+|.|++++ +++... +. .+ + ...........++++|+
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~-~~-------~~----------~----v~~~g~~~p~gia~~pd 85 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLST-YA-------EL----------S----VYHRGESGLLGLALHPR 85 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEE-EE-------EC----------C----CCCSTTCSEEEEEECTT
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccE-ee-------cc----------e----EeecCCCCceeEEECCC
Confidence 34678999999996655 5669999998 443211 10 00 0 00001112334577887
Q ss_pred ---CCEEEEEEC-C-----CcEEEEECCCcc------cccccc-----CcccCEEEEEEcCCCCEEEEEe
Q 010816 441 ---SRLLLSGSK-D-----STLKVWDIRTQK------LKQDLP-----GHADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 441 ---~~~l~s~s~-d-----~~v~iwd~~~~~------~~~~~~-----~h~~~V~~l~~s~dg~~l~s~~ 490 (500)
+..|+.+.. + +.|..|+..... ++..++ .|. ...++|.|||...++.+
T Consensus 86 f~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 86 FPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSCEEEECC
T ss_pred CCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCCEEEEEC
Confidence 444444432 2 567778766431 112232 133 25789999997666644
No 314
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=91.05 E-value=8 Score=34.38 Aligned_cols=143 Identities=10% Similarity=0.114 Sum_probs=67.5
Q ss_pred eEEEEeC--CCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEeCCCCCcccc-cccCc
Q 010816 122 QLASGSG--DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKA----GELQCWDPQTGKPSGN-PLSGH 192 (500)
Q Consensus 122 ~lat~~~--d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~ 192 (500)
+++.|+. ...+.+||..+.+-.. .+......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-... .+...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~ 91 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP 91 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc
Confidence 4555554 3578888887653211 11111111122222 56677777755 5688889877642111 01100
Q ss_pred ccceEEEEeeeeecCCCCceEEEEeCC------CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEEEEeC-----
Q 010816 193 KKWITGISWEPVHLNAPCRRFVSASKD------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ----- 259 (500)
Q Consensus 193 ~~~v~~~~~~~~~~~~~~~~~~s~s~d------g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~----- 259 (500)
......+. .+...++.|+.+ ..+.+||..+.+-... +......-.++.+ .+..++.|+.
T Consensus 92 r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 92 RDSLAACA-------AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA-NGLIYVCGGSLGNNV 163 (306)
T ss_dssp CBSCEEEE-------ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEESCTT
T ss_pred ccceeEEE-------ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE-CCEEEEECCCCCCCC
Confidence 11001111 133467777765 4688899887653221 1111111112222 2233444543
Q ss_pred ----CCeEEEEeCCCCeeE
Q 010816 260 ----DCTIKVWETTQGKLI 274 (500)
Q Consensus 260 ----dg~i~lwd~~~~~~~ 274 (500)
-..+.+||..+.+..
T Consensus 164 ~~~~~~~~~~yd~~~~~W~ 182 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWT 182 (306)
T ss_dssp TCEECCCEEEEETTTTEEE
T ss_pred cccccceEEEeCCCCCeEE
Confidence 345778888776543
No 315
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.44 E-value=9 Score=35.01 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=26.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCce
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKF 394 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~ 394 (500)
...+.|+|.|||.++++--..|.|++++..+++.
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~ 65 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK 65 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE
Confidence 4568999999999887765589999998766553
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=90.23 E-value=9.4 Score=33.83 Aligned_cols=52 Identities=23% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
++++++.|+.+ ..+.+||..+.+... .++.....-..+.+ +++.++.||.++
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~ 262 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDG 262 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCC
Confidence 66777777754 368899988765432 22211111122222 566777777654
No 317
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=89.94 E-value=10 Score=33.72 Aligned_cols=51 Identities=14% Similarity=0.242 Sum_probs=28.7
Q ss_pred CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++++++.|+.+ ..+.+||..+.+... .++........+.+ +++.++.||.+
T Consensus 200 ~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 257 (306)
T 3ii7_A 200 KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQ 257 (306)
T ss_dssp TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBC
T ss_pred CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcC
Confidence 56677776653 458899988765432 22222222233333 56777777754
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=89.58 E-value=26 Score=37.99 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeE-EecCCCCCEEEEEEcCC------CCEEEEEeC-CCeEEEEeCCC
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSAD------GKHLVSGSK-AGELQCWDPQT 181 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~------~~~l~s~~~-d~~i~~wd~~~ 181 (500)
.|...+.+. .+++.++ .+.+.++++..+.... .-..-...|.|+++.|. +++++.|.. |++++++++.+
T Consensus 515 ~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~ 591 (1158)
T 3ei3_A 515 NISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS 591 (1158)
T ss_dssp CCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT
T ss_pred EEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC
Confidence 354444432 3555554 5677777776542111 11123567999999763 468999987 99999999875
Q ss_pred CCcccc-cccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEEC
Q 010816 182 GKPSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDV 227 (500)
Q Consensus 182 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~ 227 (500)
-+.... .+.. .....++..... .....+..|-.||.+.-+.+
T Consensus 592 l~~~~~~~L~~-~~~p~si~l~~~---~~~~~L~igl~dG~l~~~~~ 634 (1158)
T 3ei3_A 592 FELLHKEMLGG-EIIPRSILMTTF---ESSHYLLCALGDGALFYFGL 634 (1158)
T ss_dssp CCEEEEEECCS-SCCEEEEEEEEE---TTEEEEEEEETTSEEEEEEE
T ss_pred CCeEEEEECCC-CCCCcEEEEEEe---CCCcEEEEEeCCCeEEEEEE
Confidence 432211 1111 112223322211 11235667778887755443
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=88.71 E-value=4.7 Score=37.07 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=22.9
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
.....++|.|+|+++++ ..+|.|++++ .+++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~ 59 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGK 59 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCc
Confidence 34678999999985555 5669999997 3444
No 320
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=88.58 E-value=1.8 Score=39.48 Aligned_cols=145 Identities=10% Similarity=0.027 Sum_probs=79.4
Q ss_pred CeEEEEeCCCcEEEEeCCCCceeEEecCC-CCCEEEEEEc--C-CCCEEEEE-eCCCeEEEEeCCCCCcccccccC----
Q 010816 121 RQLASGSGDTTVRLWDLNTQTPMFKCTGH-KNWVLCIAWS--A-DGKHLVSG-SKAGELQCWDPQTGKPSGNPLSG---- 191 (500)
Q Consensus 121 ~~lat~~~d~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s--~-~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~---- 191 (500)
.+++.++.||.|.-.|.++++.+..+... ..++....-. + ++..++.. +.||.|..++..+|.... ....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~-~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL-PLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE-EEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe-eeccccce
Confidence 35788899999999999999888776543 1222221100 1 22333333 579999999988774321 1000
Q ss_pred cccceEEEEeeeeec----CCCCceEEEEeCCCcEEEEECCCCeEEEEecCcc--c-----cEEEEE---e---CCCCeE
Q 010816 192 HKKWITGISWEPVHL----NAPCRRFVSASKDGDARIWDVSLRKCVICLSGHT--L-----AVTCVK---W---GGDGVI 254 (500)
Q Consensus 192 ~~~~v~~~~~~~~~~----~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~--~-----~v~~~~---~---~~~~~l 254 (500)
...++.. .-.|.-. ......+++|+.+|.+...|+.+|+.+..+.... . ...|.. + ..++.+
T Consensus 90 ~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 90 STSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp TTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred ecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 0001110 0011100 0134578899999999999999999988875321 1 111111 1 123456
Q ss_pred EEEeCCCeEEEEe
Q 010816 255 YTGSQDCTIKVWE 267 (500)
Q Consensus 255 ~t~~~dg~i~lwd 267 (500)
+.+..+..+...+
T Consensus 169 ~ig~~~y~v~~~~ 181 (339)
T 2be1_A 169 VIGKTIFELGIHS 181 (339)
T ss_dssp EEEEEEEECEECC
T ss_pred EEecceEEEEEEC
Confidence 6677666666655
No 321
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=88.44 E-value=13 Score=33.12 Aligned_cols=51 Identities=22% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCCEEEEEECCC-----cEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKDS-----TLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d~-----~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++++++.|+.++ .+.+||..+.+... .++........+.+ +++.++.||.+
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence 667777777654 58889988765432 22221111222333 55677777764
No 322
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.25 E-value=9.8 Score=36.38 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.3
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGK 393 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~ 393 (500)
..+.|+|.|+|+++++-...+.|++++..+++
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 46789999999988775544578888866554
No 323
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=87.99 E-value=14 Score=32.74 Aligned_cols=106 Identities=11% Similarity=0.182 Sum_probs=50.2
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCCccccc-ccCcccceEEEEeeeeecCCCCceEEEEeCCC-----cEEEEECCC
Q 010816 161 DGKHLVSGSKA-----GELQCWDPQTGKPSGNP-LSGHKKWITGISWEPVHLNAPCRRFVSASKDG-----DARIWDVSL 229 (500)
Q Consensus 161 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg-----~v~iwd~~~ 229 (500)
++.+++.|+.+ ..+.+||+.+.+-.... +.........+.. +...++.|+.++ .+.+||+.+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~~d~~~ 133 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL-------NGLLYAVGGFDGSTGLSSVEAYNIKS 133 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-------TTEEEEEEEECSSCEEEEEEEEETTT
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE-------CCEEEEEcCCCCCccCceEEEEeCCC
Confidence 56677777755 35788888765421110 1111111111111 234677777553 577888876
Q ss_pred CeEEEE--ecCccccEEEEEeCCCCeEEEEeCC-------CeEEEEeCCCCeeE
Q 010816 230 RKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQD-------CTIKVWETTQGKLI 274 (500)
Q Consensus 230 ~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~d-------g~i~lwd~~~~~~~ 274 (500)
.+-... +......-.++.+ .+..++.|+.+ ..+..||..+.+..
T Consensus 134 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~ 186 (302)
T 2xn4_A 134 NEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWT 186 (302)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEE
T ss_pred CeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEE
Confidence 643221 1111111112222 23344445532 35778888776543
No 324
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=87.95 E-value=12 Score=33.37 Aligned_cols=52 Identities=15% Similarity=0.248 Sum_probs=28.9
Q ss_pred CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
++++++.|+.+ ..+.+||+.+.+... .++.....-..+.. +++.++.||.++
T Consensus 215 ~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 273 (308)
T 1zgk_A 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDG 273 (308)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCS
T ss_pred CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCC
Confidence 66777777654 568999988765432 22221111122222 566777777543
No 325
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=87.32 E-value=16 Score=33.44 Aligned_cols=26 Identities=8% Similarity=0.201 Sum_probs=21.3
Q ss_pred EEEEEeCCCCe-EEEEeCCCeEEEEeC
Q 010816 243 VTCVKWGGDGV-IYTGSQDCTIKVWET 268 (500)
Q Consensus 243 v~~~~~~~~~~-l~t~~~dg~i~lwd~ 268 (500)
-..++|.+++. ++.+...|.|++++.
T Consensus 20 P~~i~~~pdG~~l~V~e~~G~i~~~~~ 46 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITLRGGELRHWQA 46 (353)
T ss_dssp EEEEEECSTTCCEEEEETTTEEEEEET
T ss_pred cEEEEEcCCCCEEEEEeCCceEEEEeC
Confidence 45788999988 888888898888874
No 326
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.21 E-value=32 Score=35.22 Aligned_cols=113 Identities=12% Similarity=0.142 Sum_probs=59.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCC
Q 010816 150 KNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSL 229 (500)
Q Consensus 150 ~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~ 229 (500)
...|.++.-..+|. |-.|..+| +..||-.+-+............|.++... ....+-.|+.+| +..||..+
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d------~~g~lWigT~~G-l~~yd~~~ 91 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVII------DNTYLYMGTDNG-ILVYNYRA 91 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEE------TTTEEEEEETTE-EEEEETTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEc------CCCcEEEEeCCC-eEEEeCCC
Confidence 45688888777774 44455566 44565322110000001112345554322 123555666555 77889877
Q ss_pred CeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCee
Q 010816 230 RKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKL 273 (500)
Q Consensus 230 ~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~ 273 (500)
.+...........|.++.. .++.|..++.+ -+..+|..+++.
T Consensus 92 ~~f~~~~~~~~~~i~~i~~-~~g~lWigt~~-Gl~~~~~~~~~~ 133 (758)
T 3ott_A 92 DRYEQPETDFPTDVRTMAL-QGDTLWLGALN-GLYTYQLQSRKL 133 (758)
T ss_dssp TEECCCSCCCCSCEEEEEE-ETTEEEEEETT-EEEEEETTTCCE
T ss_pred CEEECcccCCCceEEEEEe-cCCcEEEEcCC-cceeEeCCCCeE
Confidence 6432211111234666654 46778888776 677888776554
No 327
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=83.82 E-value=26 Score=32.01 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=31.9
Q ss_pred CCCCEEEEEECCCcEEEEECCCccc------cccccCcccCEEEEEEcCCCCEEEEEe
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQKL------KQDLPGHADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~~~------~~~~~~h~~~V~~l~~s~dg~~l~s~~ 490 (500)
.+|.++++.-..+.|...++..... ...+-.-..++..+++.|||...++..
T Consensus 276 ~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 276 FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 3566666655666777776654321 111212235788999999998777654
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=83.66 E-value=24 Score=31.48 Aligned_cols=51 Identities=20% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCCEEEEEECC-----CcEEEEECCCccccc--cccCcccCEEEEEEcCCCCEEEEEeCC
Q 010816 440 DSRLLLSGSKD-----STLKVWDIRTQKLKQ--DLPGHADEVFAVDWSPDGEKVASGGKD 492 (500)
Q Consensus 440 ~~~~l~s~s~d-----~~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s~~~D 492 (500)
++++++.|+.+ ..+.+||..+.+... .++........+.+ +++.++.||.+
T Consensus 206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~ 263 (318)
T 2woz_A 206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFA 263 (318)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence 56777777653 357789988765432 22222222222333 45667777754
No 329
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=83.53 E-value=23 Score=31.34 Aligned_cols=146 Identities=10% Similarity=0.095 Sum_probs=66.9
Q ss_pred CCCeEEEEeC----CCcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeC----C-----CeEEEEeCCCCC
Q 010816 119 DGRQLASGSG----DTTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSK----A-----GELQCWDPQTGK 183 (500)
Q Consensus 119 ~~~~lat~~~----d~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~----d-----~~i~~wd~~~~~ 183 (500)
++..++.|+. -..+.+||..+.+-.. .+......-..+.+ ++.+++.|+. + ..+.+||+.+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 4555666653 2368888887653211 11110111122222 5666777765 2 357888887654
Q ss_pred cccc-cccCcccceEEEEeeeeecCCCCceEEEEeCC-----CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEE
Q 010816 184 PSGN-PLSGHKKWITGISWEPVHLNAPCRRFVSASKD-----GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIY 255 (500)
Q Consensus 184 ~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~ 255 (500)
-... .+.........+.. +...++.|+.+ ..+.+||..+.+-... +......-.++.+ .+..++
T Consensus 102 W~~~~~~p~~r~~~~~~~~-------~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv 173 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI-------DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYA 173 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE-------TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEE
T ss_pred EeECCCCCcCccccEEEEE-------CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEE
Confidence 2111 01111111111111 23456666643 3678888877643221 1111111122222 233455
Q ss_pred EEeCC-----CeEEEEeCCCCeeE
Q 010816 256 TGSQD-----CTIKVWETTQGKLI 274 (500)
Q Consensus 256 t~~~d-----g~i~lwd~~~~~~~ 274 (500)
.|+.+ ..+..||..+.+..
T Consensus 174 ~GG~~~~~~~~~~~~yd~~~~~W~ 197 (308)
T 1zgk_A 174 VGGFDGTNRLNSAECYYPERNEWR 197 (308)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEE
T ss_pred EeCCCCCCcCceEEEEeCCCCeEe
Confidence 56654 45778888776543
No 330
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=83.24 E-value=27 Score=31.91 Aligned_cols=59 Identities=12% Similarity=0.223 Sum_probs=32.6
Q ss_pred EEEeeCCCeEEEEcCCCCCCCc-eeeecccCcEEEEEECC-CCCEEEEEeCC-CcEEEEeCC
Q 010816 332 LVSGSDDFTMFLWEPAVSKQPK-TRMTGHQQLVNHVYFSP-DGQWVASASFD-KSIKLWNGT 390 (500)
Q Consensus 332 ~~s~s~d~~v~~wd~~~~~~~~-~~~~~h~~~v~~l~~sp-~g~~lasgs~D-g~i~lwd~~ 390 (500)
.++-+..+.|..|+........ ............+++++ +|++.+++..+ +.|..|+..
T Consensus 236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 236 YIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred EEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 3445556788888765322111 11112234567788998 58877766555 345555544
No 331
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=81.33 E-value=7 Score=35.88 Aligned_cols=27 Identities=15% Similarity=0.307 Sum_probs=21.3
Q ss_pred cEEEEEECCCCC-EEEEEeCCCcEEEEeC
Q 010816 362 LVNHVYFSPDGQ-WVASASFDKSIKLWNG 389 (500)
Q Consensus 362 ~v~~l~~sp~g~-~lasgs~Dg~i~lwd~ 389 (500)
....|+|.|+|+ ++++ ...|.|++++.
T Consensus 19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~ 46 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLIT-LRGGELRHWQA 46 (353)
T ss_dssp SEEEEEECSTTCCEEEE-ETTTEEEEEET
T ss_pred CcEEEEEcCCCCEEEEE-eCCceEEEEeC
Confidence 367899999999 6654 56789999985
No 332
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=80.56 E-value=4.8 Score=39.18 Aligned_cols=114 Identities=12% Similarity=0.076 Sum_probs=61.4
Q ss_pred cCcEEEEEECCCCCEEEEEe-CCCcEEEEeCCCCceEE--EEeCCcccEEEEEeeeeeeecCCCCceeeeeccccceeeE
Q 010816 360 QQLVNHVYFSPDGQWVASAS-FDKSIKLWNGTTGKFVA--VFRGHVGPVYQIRFELIYCFRYPSNFYCVVDMSCCMSLYS 436 (500)
Q Consensus 360 ~~~v~~l~~sp~g~~lasgs-~Dg~i~lwd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (500)
......+.++|||++++.++ .+.++.++|.+...... .+..-...+.. .....-.....+
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-----------------e~e~GlGPlHt~ 384 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-----------------EPELGLGPLHTT 384 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-----------------CCBCCSCEEEEE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-----------------eccCCCcccEEE
Confidence 34456789999999887655 58899999987421100 00000000000 000001112236
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCc----------cccccccCcccCEEEEE------EcCCCCEEEEEeC
Q 010816 437 WSADSRLLLSGSKDSTLKVWDIRTQ----------KLKQDLPGHADEVFAVD------WSPDGEKVASGGK 491 (500)
Q Consensus 437 ~s~~~~~l~s~s~d~~v~iwd~~~~----------~~~~~~~~h~~~V~~l~------~s~dg~~l~s~~~ 491 (500)
|.++|.-..+-.-|..|--|++... ..+.++.-|.. +-.+. -.|||+||++...
T Consensus 385 Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK 454 (638)
T 3sbq_A 385 FDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK 454 (638)
T ss_dssp ECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred ECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence 7888855556668999999998653 23333333322 11121 2578999988743
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=80.13 E-value=32 Score=30.56 Aligned_cols=137 Identities=12% Similarity=0.038 Sum_probs=63.7
Q ss_pred CcEEEEeCCCCceeE-EecCCCCCEEEEEEcCCCCEEEEEeC----C-------CeEEEEeCCCCCcccc-cccCcccce
Q 010816 130 TTVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----A-------GELQCWDPQTGKPSGN-PLSGHKKWI 196 (500)
Q Consensus 130 ~~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~----d-------~~i~~wd~~~~~~~~~-~~~~~~~~v 196 (500)
..+.+||..+++-.. .+..............++++++.|+. + ..+..||+.+.+-... .+.......
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 92 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF 92 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce
Confidence 568888887765221 12111112222233357777777774 1 1267788876642111 111101000
Q ss_pred EEEEeeeeecCCCCceEEEEeCC--------CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEEEEeC-C-----
Q 010816 197 TGISWEPVHLNAPCRRFVSASKD--------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ-D----- 260 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~s~s~d--------g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~-d----- 260 (500)
..+. .....++.|+.+ ..+.+||..+.+-... +......-.++. ..+..++.|+. +
T Consensus 93 ~~~~-------~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 93 GLGE-------ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp EEEE-------ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBC
T ss_pred eEEE-------ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCccc
Confidence 1111 123456666632 4688899877642211 111111111222 22334555665 2
Q ss_pred CeEEEEeCCCCeeE
Q 010816 261 CTIKVWETTQGKLI 274 (500)
Q Consensus 261 g~i~lwd~~~~~~~ 274 (500)
..+.+||..+.+..
T Consensus 165 ~~~~~yd~~~~~W~ 178 (315)
T 4asc_A 165 NKMCVYDPKKFEWK 178 (315)
T ss_dssp CCEEEEETTTTEEE
T ss_pred ceEEEEeCCCCeEE
Confidence 46788888776543
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=78.97 E-value=20 Score=32.62 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=19.6
Q ss_pred cEEEEECCCcccc--ccccCcccCEEEEEEcCCCCEEEEEeCCC
Q 010816 452 TLKVWDIRTQKLK--QDLPGHADEVFAVDWSPDGEKVASGGKDR 493 (500)
Q Consensus 452 ~v~iwd~~~~~~~--~~~~~h~~~V~~l~~s~dg~~l~s~~~D~ 493 (500)
.+.+||+.+.+.. ..++.....-.++. .+++.++.||.++
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLIIGGETA 327 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEEEEECG
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEEeeeCC
Confidence 5788998875543 22322211112232 3567788888653
No 335
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=78.86 E-value=16 Score=38.72 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=33.4
Q ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 361 QLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 361 ~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
..+.+++..++..++.+-+.|+++|+|++.+++++.+..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 346777888888999999999999999999999987643
No 336
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=78.54 E-value=60 Score=32.88 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=18.5
Q ss_pred EEECCC-CCEEEEEeC--C-----CcEEEEeCCCCc
Q 010816 366 VYFSPD-GQWVASASF--D-----KSIKLWNGTTGK 393 (500)
Q Consensus 366 l~~sp~-g~~lasgs~--D-----g~i~lwd~~~~~ 393 (500)
+.+..+ +.+++.|+. + ..+.+||+.+..
T Consensus 544 ~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 544 LEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp EEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred EEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 455554 677778876 2 357888887765
No 337
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.47 E-value=48 Score=35.99 Aligned_cols=37 Identities=16% Similarity=0.195 Sum_probs=30.7
Q ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 363 VNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 363 v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
+.+++..++..++.+-+.|+++|+|++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3445566788899999999999999999999987643
No 338
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=75.77 E-value=46 Score=30.09 Aligned_cols=229 Identities=12% Similarity=0.148 Sum_probs=124.1
Q ss_pred CCCcEEEEeCCCCceeEEec-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeec
Q 010816 128 GDTTVRLWDLNTQTPMFKCT-GHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHL 206 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 206 (500)
++..|.|-|+..+....+.. .-+ +.-.+|..+.+|.-. ..+++++|+++....+... ....|.--.|-..
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~-- 117 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-- 117 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS--
T ss_pred CCCEEEEEECCCCCCccccccccc----eeeeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEecCC--
Confidence 34478889988755443221 111 233478777766654 6789999998875433211 1234444555321
Q ss_pred CCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc----ccEEEEEeCCCC--eEEEEe------CCCeEEEEeCCCCee
Q 010816 207 NAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT----LAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKL 273 (500)
Q Consensus 207 ~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~----~~v~~~~~~~~~--~l~t~~------~dg~i~lwd~~~~~~ 273 (500)
..++-.. +..|.-|++.. ....+.+..|. ..|.....+++. .+++|- -.|.+.+|..+. +.
T Consensus 118 ----~~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~ 191 (365)
T 2xzh_A 118 ----NTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KV 191 (365)
T ss_dssp ----SEEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TE
T ss_pred ----CeEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecc-cc
Confidence 2333222 45799999864 34455555443 234444445544 233332 236788888765 34
Q ss_pred EEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-e---eCCCeEEEEcCCCC
Q 010816 274 IRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-G---SDDFTMFLWEPAVS 349 (500)
Q Consensus 274 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~---s~d~~v~~wd~~~~ 349 (500)
.+.+++|......+.+.... .+..+++ + ...+.+++-++...
T Consensus 192 sQ~ieGhaa~F~~~~~~g~~----------------------------------~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 192 SQPIEGHAASFAQFKMEGNA----------------------------------EESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp EEEECCSEEEEEEECCTTCS----------------------------------SCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred cceeeeeeeeeEEEecCCCC----------------------------------CCceEEEEEEecCCCcEEEEEEcCCC
Confidence 56667775544333222110 0111211 1 11246777765332
Q ss_pred --CC-Cc-ee----e---ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccE
Q 010816 350 --KQ-PK-TR----M---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (500)
Q Consensus 350 --~~-~~-~~----~---~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v 405 (500)
.. +. .+ + ....+-..++..|+.-..+..-+.-|.|.+||+++|.++..-+-...+|
T Consensus 238 ~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nrIS~d~i 304 (365)
T 2xzh_A 238 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 304 (365)
T ss_dssp CTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred CCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEeccCCCce
Confidence 11 11 10 0 1123446678888887888888899999999999999987655444443
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=74.14 E-value=1.1e+02 Score=33.84 Aligned_cols=224 Identities=12% Similarity=0.139 Sum_probs=109.4
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecC
Q 010816 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLN 207 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 207 (500)
....|.|-|+..+..+.+.. -.--+.-.+|..+.+|.-. ..+++++|+++....+... ....|.--.|-..
T Consensus 46 ~~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~--- 116 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL--- 116 (1630)
T ss_pred CCceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC---
Confidence 34478888887754432110 0111233467766665543 6789999998765432211 1234545555321
Q ss_pred CCCceEEEEeCCCcEEEEECCCC-eEEEEecCc----cccEEEEEeCCCC--eEEEEe------CCCeEEEEeCCCCeeE
Q 010816 208 APCRRFVSASKDGDARIWDVSLR-KCVICLSGH----TLAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGKLI 274 (500)
Q Consensus 208 ~~~~~~~s~s~dg~v~iwd~~~~-~~~~~~~~h----~~~v~~~~~~~~~--~l~t~~------~dg~i~lwd~~~~~~~ 274 (500)
..++-. .+..|..|++... .+...+..| ...|..-..+++. .+++|- -.|.+.+|....+ ..
T Consensus 117 ---~~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~s 191 (1630)
T 1xi4_A 117 ---NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VS 191 (1630)
T ss_pred ---CeeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cc
Confidence 122222 3457999999642 333333333 2233333334443 233332 2466777766542 23
Q ss_pred EEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEE-e---eCCCeEEEEcCCCC-
Q 010816 275 RELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVS-G---SDDFTMFLWEPAVS- 349 (500)
Q Consensus 275 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~---s~d~~v~~wd~~~~- 349 (500)
+.+.+|......+..... ..+..+++ + ...+.+++-++...
T Consensus 192 Q~iegha~~F~~~~~~~~----------------------------------~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 192 QPIEGHAASFAQFKMEGN----------------------------------AEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred hhhhHhHhhhheeccCCC----------------------------------CCCceEEEEEEecCCCceEEEEecCCCc
Confidence 334444322211111100 00111211 1 11246666665332
Q ss_pred -C-CCc-ee----e---ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEe
Q 010816 350 -K-QPK-TR----M---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFR 399 (500)
Q Consensus 350 -~-~~~-~~----~---~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~ 399 (500)
. .+. .+ . ..-.+-..++..|+.-..+..-+.-|.|.+||+.||.++..-+
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 0 000 00 0 0112345567778877788888899999999999998875433
No 340
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=70.47 E-value=98 Score=31.56 Aligned_cols=151 Identities=13% Similarity=0.046 Sum_probs=77.6
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccc
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPL 189 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 189 (500)
.|.++...+++..|-.|.. +.+..+|..++.......-....|.++...++|.+.+. +. +-+.+++..+++......
T Consensus 192 ~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~-~Gl~~~~~~~~~~~~~~~ 268 (758)
T 3ott_A 192 FVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TD-NGLYVYHNDTTPLQHIIH 268 (758)
T ss_dssp CEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ET-TEEEEECCTTSCCEEECC
T ss_pred eeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eC-CceeEEecCCCcEEEEEc
Confidence 4888888877664333433 45778887765422111112345888888777765554 44 457788876654211100
Q ss_pred c------CcccceEEEEeeeeecCCCCceEEEEeCCCcEEEEECCCCeEEEEec-----CccccEEEEEeCCCCeEEEEe
Q 010816 190 S------GHKKWITGISWEPVHLNAPCRRFVSASKDGDARIWDVSLRKCVICLS-----GHTLAVTCVKWGGDGVIYTGS 258 (500)
Q Consensus 190 ~------~~~~~v~~~~~~~~~~~~~~~~~~s~s~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~l~t~~ 258 (500)
. -....|.++... ....+=.|+..| +.+......-...... .....|.++.-..+|.|..|+
T Consensus 269 ~~~~~~~l~~~~i~~i~~D------~~g~lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt 341 (758)
T 3ott_A 269 DSRNIQSLTNNIIWNIFAD------QEHNIWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGG 341 (758)
T ss_dssp CTTCTTSCSCSCEEEEEEC------TTCCEEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEE
T ss_pred CCCCcCcCCcCeEEEEEEc------CCCCEEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEee
Confidence 0 011234444321 112344455555 4433321111111110 112468888888888999888
Q ss_pred CCCeEEEEeCCCC
Q 010816 259 QDCTIKVWETTQG 271 (500)
Q Consensus 259 ~dg~i~lwd~~~~ 271 (500)
.+| +..++..++
T Consensus 342 ~~G-l~~~~~~~~ 353 (758)
T 3ott_A 342 ANG-LIRFTDPAG 353 (758)
T ss_dssp TTE-EEEESCTTS
T ss_pred CCc-ceeeccccc
Confidence 665 656665543
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=69.56 E-value=78 Score=30.03 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=21.7
Q ss_pred EEEEEeCCCCeEEEEeCCC-eEEEEeCCCC
Q 010816 243 VTCVKWGGDGVIYTGSQDC-TIKVWETTQG 271 (500)
Q Consensus 243 v~~~~~~~~~~l~t~~~dg-~i~lwd~~~~ 271 (500)
-..++|.++|.|+.+...+ .|++++..++
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 4578999999888888775 6877765444
No 342
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=65.96 E-value=92 Score=29.63 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=21.4
Q ss_pred cEEEEEECCCCC-EEEEEeCCCcEEEEeCC
Q 010816 362 LVNHVYFSPDGQ-WVASASFDKSIKLWNGT 390 (500)
Q Consensus 362 ~v~~l~~sp~g~-~lasgs~Dg~i~lwd~~ 390 (500)
..+.|+|.|||. .|..+...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 357899999995 34444678999999753
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=65.02 E-value=30 Score=33.80 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=49.8
Q ss_pred EEEEEcCCCCeEEEEe-CCCcEEEEeCCCCce------------eEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEe
Q 010816 112 LSVAFSPDGRQLASGS-GDTTVRLWDLNTQTP------------MFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWD 178 (500)
Q Consensus 112 ~~~~~sp~~~~lat~~-~d~~i~iwd~~~~~~------------~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd 178 (500)
..+.++|||++++.++ .+.++.|+|++.-.. +..-..-.-.....+|.++|....|.--|..|.-|+
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence 4678999999988776 589999999863110 111111234567789999996556677899999999
Q ss_pred CCC
Q 010816 179 PQT 181 (500)
Q Consensus 179 ~~~ 181 (500)
+..
T Consensus 406 i~~ 408 (638)
T 3sbq_A 406 MEE 408 (638)
T ss_dssp HHH
T ss_pred ccH
Confidence 864
No 344
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=63.52 E-value=16 Score=36.09 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=39.4
Q ss_pred eEEcCCCCEEEEEECC------------CcEEEEECCCccccccccCcc-cCEEEEEEcCCCCEEEEE
Q 010816 435 YSWSADSRLLLSGSKD------------STLKVWDIRTQKLKQDLPGHA-DEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d------------~~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~s~ 489 (500)
+.|+|.|.+++.-..+ +.+.+.+..++++.+.+.+.. .+++.++|+||++.|...
T Consensus 481 L~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 481 LGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 5789999977765432 235556666777766665553 589999999999998765
No 345
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=63.48 E-value=76 Score=27.72 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816 219 DGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 219 dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~ 269 (500)
||.|..|-....-.+-.-......|..++...+..++. . ||.|..|-..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l-~-~G~v~~wG~n 89 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-K-DGEVIAWGGN 89 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEE-E-TTEEEEEECC
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEE-E-CCEEEEeeCC
Confidence 89999997543211100001122455565554444544 4 8888888643
No 346
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=62.57 E-value=1.1e+02 Score=29.06 Aligned_cols=229 Identities=12% Similarity=0.144 Sum_probs=125.4
Q ss_pred CCCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcc--cceEEEEeeeee
Q 010816 128 GDTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHK--KWITGISWEPVH 205 (500)
Q Consensus 128 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~~v~~~~~~~~~ 205 (500)
++..|.|-|+..+....+..-. --+.-.+|..+.+|.-. ..+++++|+++....+ .|. ..|.--.|-..
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~---AdsAIMnP~~~iiALra-g~~lQiFnle~K~klk----s~~~~e~VvfWkWis~- 116 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS---ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMK----AHTMTDDVTFWKWISL- 116 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC---CSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEE----EEECSSCCCEEEEEET-
T ss_pred CCCeEEEEECCCCCcceecccc---cceeeeCCCCcEEEEec-CCeEEEEchHHhhhhc----ceecCCCceEEEecCC-
Confidence 3447888898875544322111 11334567777666544 6899999998865432 222 34444555431
Q ss_pred cCCCCceEEEEeCCCcEEEEECCC-CeEEEEecCcc----ccEEEEEeCCCC--eEEEEe------CCCeEEEEeCCCCe
Q 010816 206 LNAPCRRFVSASKDGDARIWDVSL-RKCVICLSGHT----LAVTCVKWGGDG--VIYTGS------QDCTIKVWETTQGK 272 (500)
Q Consensus 206 ~~~~~~~~~s~s~dg~v~iwd~~~-~~~~~~~~~h~----~~v~~~~~~~~~--~l~t~~------~dg~i~lwd~~~~~ 272 (500)
..++-. .+..|.-|++.. ....+.+..|. ..|.....+++. .+++|- -.|.+.+|.... +
T Consensus 117 -----~~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~ 189 (494)
T 1bpo_A 117 -----NTVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-K 189 (494)
T ss_dssp -----TEEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-C
T ss_pred -----CeEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-c
Confidence 123222 356799999864 34455555543 234444445544 233332 236788888765 3
Q ss_pred eEEEeecCCceEEEEEecCcceeeeccccCCCCCCCCHHHHHHHHHHhhhhhcCCCCcEEEEeeC---CCeEEEEcCCCC
Q 010816 273 LIRELKGHGHWVNSLALSTEYALRTGAFDHTGKQYSSPEEMKKAALERYNKIKGNAPERLVSGSD---DFTMFLWEPAVS 349 (500)
Q Consensus 273 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~---d~~v~~wd~~~~ 349 (500)
..+.+.+|......+.+..... +...+.-+.. .+.+++-++...
T Consensus 190 ~sQ~ieGhaa~F~~~~~~g~~~---------------------------------~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 190 VSQPIEGHAASFAQFKMEGNAE---------------------------------ESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp CEEEECCSEEEEEEEECTTCSS---------------------------------EEEEEEEEECSTTCCEEEEEECSCC
T ss_pred ccchheeeeeeeEEEecCCCCC---------------------------------CceEEEEEEecCCCcEEEEEEcCCC
Confidence 4566677765444443322100 0011111111 256677665332
Q ss_pred ---CCCc-ee----e---ecccCcEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeCCcccE
Q 010816 350 ---KQPK-TR----M---TGHQQLVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRGHVGPV 405 (500)
Q Consensus 350 ---~~~~-~~----~---~~h~~~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~h~~~v 405 (500)
..+. .+ . ....+-..++..|+.-..+..-+.-|.|.+||+++|.++..-+-...+|
T Consensus 237 ~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~i 303 (494)
T 1bpo_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI 303 (494)
T ss_dssp CTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred ccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCce
Confidence 1110 00 0 1123456678888888888888999999999999999987655444443
No 347
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=59.66 E-value=1.5e+02 Score=29.90 Aligned_cols=108 Identities=11% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCCeEEEEeCC------CcEEEEeCCCCceeE--EecCCCCCEEEEEEcCCCCEEEEEeCCC--eEEEEeCCCCCccccc
Q 010816 119 DGRQLASGSGD------TTVRLWDLNTQTPMF--KCTGHKNWVLCIAWSADGKHLVSGSKAG--ELQCWDPQTGKPSGNP 188 (500)
Q Consensus 119 ~~~~lat~~~d------~~i~iwd~~~~~~~~--~~~~h~~~v~~v~~s~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~ 188 (500)
+++.++.||.+ ..+.+||..+..-.. .+.. ...-.++....++++++.|+.++ .+.+||+.+..-....
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~ 529 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT 529 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence 67777777643 357888887642111 1111 11111223323778888888765 6889998776422111
Q ss_pred c----cCcccceEEEEeeeeecCCCCceEEEEeCC-------CcEEEEECCCCe
Q 010816 189 L----SGHKKWITGISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRK 231 (500)
Q Consensus 189 ~----~~~~~~v~~~~~~~~~~~~~~~~~~s~s~d-------g~v~iwd~~~~~ 231 (500)
. ........++.+.. .....++.|+.+ ..+.+||+.+..
T Consensus 530 ~~g~~p~~r~~~~a~v~~~----~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 530 PKDEFFQNSLVSAGLEFDP----VSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp CSSGGGGSCCBSCEEEEET----TTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCCCCCcccceeEEEEeC----CCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 1 00011111122111 113467777652 358889988766
No 348
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=59.02 E-value=1.1e+02 Score=27.88 Aligned_cols=72 Identities=18% Similarity=0.132 Sum_probs=47.0
Q ss_pred cEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCce--eEEe----cCCCCCEEEEEEcCC---CCEEEEE---eCCCeEEEE
Q 010816 110 AVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTP--MFKC----TGHKNWVLCIAWSAD---GKHLVSG---SKAGELQCW 177 (500)
Q Consensus 110 ~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~--~~~~----~~h~~~v~~v~~s~~---~~~l~s~---~~d~~i~~w 177 (500)
.-+.++|.|||+++++--..|.|++++..++.. +..+ .........|+|+|+ +..|... ..++.|.-|
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~ 112 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM 112 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence 457899999999887776689999998665443 2212 123566899999995 3444432 234556666
Q ss_pred eCCC
Q 010816 178 DPQT 181 (500)
Q Consensus 178 d~~~ 181 (500)
....
T Consensus 113 ~~~~ 116 (347)
T 3das_A 113 LYDE 116 (347)
T ss_dssp EBCT
T ss_pred EeCC
Confidence 6554
No 349
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=55.91 E-value=1.4e+02 Score=28.36 Aligned_cols=51 Identities=18% Similarity=0.289 Sum_probs=34.4
Q ss_pred EEEEEEcCCCC-eEEEEeCCCcEEEEeCCCC---ceeEEec---------CCCCCEEEEEEcCC
Q 010816 111 VLSVAFSPDGR-QLASGSGDTTVRLWDLNTQ---TPMFKCT---------GHKNWVLCIAWSAD 161 (500)
Q Consensus 111 V~~~~~sp~~~-~lat~~~d~~i~iwd~~~~---~~~~~~~---------~h~~~v~~v~~s~~ 161 (500)
-+.|+|.|||. +|+.+...|.|++++.... .++..+. +.......|+|+|+
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 46899999996 5666678899999975432 2223221 12456888999986
No 350
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=54.53 E-value=22 Score=35.85 Aligned_cols=37 Identities=11% Similarity=0.316 Sum_probs=30.1
Q ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCCCceEEEEeC
Q 010816 362 LVNHVYFSPDGQWVASASFDKSIKLWNGTTGKFVAVFRG 400 (500)
Q Consensus 362 ~v~~l~~sp~g~~lasgs~Dg~i~lwd~~~~~~~~~~~~ 400 (500)
.|.++.+ +..++++-+.|.++|+|++.+++++.+..-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 477999999999999999999998876543
No 351
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=53.52 E-value=42 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=26.1
Q ss_pred eEEcCCCCEEEEEECCCcEEEEECCCccccc
Q 010816 435 YSWSADSRLLLSGSKDSTLKVWDIRTQKLKQ 465 (500)
Q Consensus 435 ~~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~ 465 (500)
.+..++..++++-+.|+++|+|++.+++++.
T Consensus 243 ~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~ 273 (1139)
T 4fhn_B 243 MIFLSTYNVLVMLSLDYKLKVLDLSTNQCVE 273 (1139)
T ss_dssp CEEETTTTEEEEEBTTCEEEEEETTTTEEEE
T ss_pred eeccCCccEEEEEeCCCEEEEEECCCCCeEE
Confidence 3456788899999999999999999887654
No 352
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.29 E-value=23 Score=37.49 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.5
Q ss_pred ccEEEEEEcCCCCeEEEEeCCCcEEEEeCCCCceeEE
Q 010816 109 EAVLSVAFSPDGRQLASGSGDTTVRLWDLNTQTPMFK 145 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d~~i~iwd~~~~~~~~~ 145 (500)
..+.++...++..+++|-+.|+++|||++.++.++..
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 3678888888999999999999999999999887764
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.95 E-value=31 Score=34.80 Aligned_cols=37 Identities=22% Similarity=0.572 Sum_probs=30.1
Q ss_pred ccEEEEEeCCCCeEEEEeCCCeEEEEeCCCCeeEEEee
Q 010816 241 LAVTCVKWGGDGVIYTGSQDCTIKVWETTQGKLIRELK 278 (500)
Q Consensus 241 ~~v~~~~~~~~~~l~t~~~dg~i~lwd~~~~~~~~~~~ 278 (500)
..|.++.+. +..+++-+.|+++|+|++.+++++.+..
T Consensus 222 ~~Is~~~~~-~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLFH-ERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEET-TTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEeccC-CcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 456666664 6689999999999999999998877654
No 354
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=45.61 E-value=50 Score=32.35 Aligned_cols=56 Identities=20% Similarity=0.299 Sum_probs=38.1
Q ss_pred eeEEcCCCCEEEEEEC------------CCcEEEEECCCccccccccCc-ccCEEEEEEcCCCCEEEEE
Q 010816 434 LYSWSADSRLLLSGSK------------DSTLKVWDIRTQKLKQDLPGH-ADEVFAVDWSPDGEKVASG 489 (500)
Q Consensus 434 ~~~~s~~~~~l~s~s~------------d~~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~s~ 489 (500)
.+.|.++|.+.++... ...|..++..++++...+.+. ..+++.++|+||++.|..+
T Consensus 480 nL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred ceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 3567888887774322 125666676677766555443 3578999999999998765
No 355
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=45.07 E-value=85 Score=30.97 Aligned_cols=58 Identities=26% Similarity=0.185 Sum_probs=39.1
Q ss_pred EEEEEEcCCCCeEEEEeCC------------CcEEEEeCCCCceeEEecCCC-CCEEEEEEcCCCCEEEEE
Q 010816 111 VLSVAFSPDGRQLASGSGD------------TTVRLWDLNTQTPMFKCTGHK-NWVLCIAWSADGKHLVSG 168 (500)
Q Consensus 111 V~~~~~sp~~~~lat~~~d------------~~i~iwd~~~~~~~~~~~~h~-~~v~~v~~s~~~~~l~s~ 168 (500)
.--|+|+|.|++++.-..+ ..+.+.+..+++....+.++. ..++.+.|+||++.|...
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3567899999976665432 235555666666554455554 568889999999887664
No 356
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=44.72 E-value=1.8e+02 Score=26.30 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=34.3
Q ss_pred CCCCEEEEEECCCcEEEEECCCc-ccc--cc-ccCcccCEEEEEEcCCCCEEEEEe
Q 010816 439 ADSRLLLSGSKDSTLKVWDIRTQ-KLK--QD-LPGHADEVFAVDWSPDGEKVASGG 490 (500)
Q Consensus 439 ~~~~~l~s~s~d~~v~iwd~~~~-~~~--~~-~~~h~~~V~~l~~s~dg~~l~s~~ 490 (500)
.+|.++++.-..+.|...++... +.. .. +.+-..++..+++.|||...++..
T Consensus 275 ~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 275 LRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp GTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred cCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 46767776666778888887753 221 12 333345788999999997766664
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=40.30 E-value=1.8e+02 Score=25.19 Aligned_cols=127 Identities=15% Similarity=0.166 Sum_probs=59.8
Q ss_pred CCcEEEEeCCCCceeEEecCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCCcccccccCcccceEEEEeeeeecCC
Q 010816 129 DTTVRLWDLNTQTPMFKCTGHKNWVLCIAWSADGKHLVSGSKAGELQCWDPQTGKPSGNPLSGHKKWITGISWEPVHLNA 208 (500)
Q Consensus 129 d~~i~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 208 (500)
||.+..|-....-.+-.-......|..++-..+ +.+.-. ||.|..|-.........+..- ...|..++-..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~--hs~~l~-~G~v~~wG~n~~Gqlg~P~~~-~~~v~~ia~G~----- 111 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLALK-DGEVIAWGGNEDGQTTVPAEA-RSGVDAIAAGA----- 111 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGG-SSSEEEEEEET-----
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCC--EEEEEE-CCEEEEeeCCCCCCCCCCccc-CCCeEEEECcC-----
Confidence 788888865432111100011234666665433 222224 899999965432222211111 12455544322
Q ss_pred CCceEEEEeCCCcEEEEECCCCeEEEEecCccccEEEEEeCCCCeEEEEeCCCeEEEEeCC
Q 010816 209 PCRRFVSASKDGDARIWDVSLRKCVICLSGHTLAVTCVKWGGDGVIYTGSQDCTIKVWETT 269 (500)
Q Consensus 209 ~~~~~~s~s~dg~v~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~l~t~~~dg~i~lwd~~ 269 (500)
...+.-. ||.|..|-....-.+-........|..++...+..++. . ||.|..|-..
T Consensus 112 --~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l-~-~G~v~~wG~n 167 (282)
T 3qhy_B 112 --WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAV-K-NGGVIAWGDN 167 (282)
T ss_dssp --TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE-E-TTEEEEEECC
T ss_pred --CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEE-E-CCEEEEecCC
Confidence 1223334 89999997643211100111223466666554434433 3 7888888643
No 358
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=39.84 E-value=2e+02 Score=25.59 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=17.2
Q ss_pred CCCCEEEEEECCC------cEEEEECCCcccccc
Q 010816 439 ADSRLLLSGSKDS------TLKVWDIRTQKLKQD 466 (500)
Q Consensus 439 ~~~~~l~s~s~d~------~v~iwd~~~~~~~~~ 466 (500)
.++++++.|+.++ .|.++++++++.+..
T Consensus 315 ~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 315 WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 3677888888543 355667777766543
No 359
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=30.83 E-value=2.7e+02 Score=24.28 Aligned_cols=136 Identities=12% Similarity=0.066 Sum_probs=60.8
Q ss_pred cEEEEeCCCCceeE-EecCCCCCEEEEEEcCCCCEEEEEeC----CC-------eEEEEeCCCCCcccc-cccCcccceE
Q 010816 131 TVRLWDLNTQTPMF-KCTGHKNWVLCIAWSADGKHLVSGSK----AG-------ELQCWDPQTGKPSGN-PLSGHKKWIT 197 (500)
Q Consensus 131 ~i~iwd~~~~~~~~-~~~~h~~~v~~v~~s~~~~~l~s~~~----d~-------~i~~wd~~~~~~~~~-~~~~~~~~v~ 197 (500)
.+..||..+.+-.. ................++.+++.|+. ++ .+..||+.+.+-... .+........
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~ 104 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG 104 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence 37788877654222 11111111122223456777777773 12 167788776542211 1111111011
Q ss_pred EEEeeeeecCCCCceEEEEeCC-------CcEEEEECCCCeEEEE--ecCccccEEEEEeCCCCeEEEEeC------CCe
Q 010816 198 GISWEPVHLNAPCRRFVSASKD-------GDARIWDVSLRKCVIC--LSGHTLAVTCVKWGGDGVIYTGSQ------DCT 262 (500)
Q Consensus 198 ~~~~~~~~~~~~~~~~~s~s~d-------g~v~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~l~t~~~------dg~ 262 (500)
.+.. +...++.|+.+ ..+.+||..+.+-... +......-.++. ..+..++.|+. -..
T Consensus 105 ~~~~-------~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 105 LGEV-------DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp EEEE-------TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCC
T ss_pred eEEE-------CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccce
Confidence 1111 23466777754 2577888876643221 111001111122 22334445553 235
Q ss_pred EEEEeCCCCeeE
Q 010816 263 IKVWETTQGKLI 274 (500)
Q Consensus 263 i~lwd~~~~~~~ 274 (500)
+.+||..+.+..
T Consensus 177 ~~~yd~~~~~W~ 188 (318)
T 2woz_A 177 VFIYNPKKGDWK 188 (318)
T ss_dssp EEEEETTTTEEE
T ss_pred EEEEcCCCCEEE
Confidence 888888876543
No 360
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.70 E-value=2.1e+02 Score=28.11 Aligned_cols=61 Identities=25% Similarity=0.182 Sum_probs=40.4
Q ss_pred ccEEEEEEcCCCCeEEEEeCC------------CcEEEEeCCCCceeEEecCC-CCCEEEEEEcCCCCEEEEEe
Q 010816 109 EAVLSVAFSPDGRQLASGSGD------------TTVRLWDLNTQTPMFKCTGH-KNWVLCIAWSADGKHLVSGS 169 (500)
Q Consensus 109 ~~V~~~~~sp~~~~lat~~~d------------~~i~iwd~~~~~~~~~~~~h-~~~v~~v~~s~~~~~l~s~~ 169 (500)
..--.|.|+++|.+.+..... +.|..++..+++....+.+. ...++.++|+||++.|..+-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 346678999999877743321 14555566566654444443 34689999999999887753
No 361
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=30.55 E-value=2.8e+02 Score=24.36 Aligned_cols=30 Identities=0% Similarity=0.000 Sum_probs=20.1
Q ss_pred EEECCCCCEEEEEeC-CCcEEEEeCCCCceE
Q 010816 366 VYFSPDGQWVASASF-DKSIKLWNGTTGKFV 395 (500)
Q Consensus 366 l~~sp~g~~lasgs~-Dg~i~lwd~~~~~~~ 395 (500)
.+++|+|+.|.-.+. ...|.+-++..+...
T Consensus 150 ~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~ 180 (302)
T 3s25_A 150 FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA 180 (302)
T ss_dssp CCSEEETTEEEEECTTTCCEEEEETTTTEEE
T ss_pred eEeeEECCEEEEEeCCCceEEEEECCCCCEE
Confidence 456788888875554 567887777665543
Done!