Query 010819
Match_columns 500
No_of_seqs 378 out of 2841
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 04:55:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 6.3E-85 1.4E-89 709.4 46.8 482 9-500 3-495 (623)
2 PF12819 Malectin_like: Carboh 100.0 1.4E-62 3.1E-67 498.1 30.6 319 34-367 1-347 (347)
3 PLN03150 hypothetical protein; 99.9 2.8E-22 6.2E-27 218.7 16.6 317 32-488 194-532 (623)
4 PF11721 Malectin: Di-glucose 99.7 3.5E-17 7.5E-22 150.1 8.0 141 31-177 2-174 (174)
5 PF11721 Malectin: Di-glucose 99.6 2.4E-16 5.2E-21 144.6 4.8 153 201-362 2-174 (174)
6 PF12819 Malectin_like: Carboh 99.2 1.7E-10 3.6E-15 117.6 11.1 151 31-182 180-347 (347)
7 KOG0617 Ras suppressor protein 99.0 1E-11 2.2E-16 109.9 -2.9 141 336-499 35-177 (264)
8 PLN00113 leucine-rich repeat r 98.9 4E-10 8.8E-15 130.4 4.2 147 335-500 165-313 (968)
9 PLN00113 leucine-rich repeat r 98.9 4.3E-10 9.2E-15 130.3 3.4 148 334-500 188-337 (968)
10 KOG0444 Cytoskeletal regulator 98.5 1.7E-08 3.8E-13 105.0 -0.2 159 334-499 126-295 (1255)
11 KOG0617 Ras suppressor protein 98.4 5.9E-09 1.3E-13 92.6 -6.1 67 426-495 129-196 (264)
12 KOG0472 Leucine-rich repeat pr 98.4 2.6E-08 5.6E-13 99.1 -2.5 140 335-500 161-302 (565)
13 KOG0444 Cytoskeletal regulator 98.3 1.1E-07 2.5E-12 99.1 0.0 142 336-499 34-177 (1255)
14 KOG0472 Leucine-rich repeat pr 98.3 4.2E-08 9.1E-13 97.6 -4.0 152 336-499 70-232 (565)
15 PF13855 LRR_8: Leucine rich r 98.3 5.5E-07 1.2E-11 67.4 3.0 59 425-483 2-61 (61)
16 KOG0532 Leucine-rich repeat (L 98.1 4.1E-07 8.8E-12 94.4 -2.3 180 311-500 56-239 (722)
17 KOG0618 Serine/threonine phosp 98.0 7.3E-07 1.6E-11 97.2 -1.2 143 334-499 310-456 (1081)
18 KOG4194 Membrane glycoprotein 98.0 2.5E-06 5.5E-11 88.8 2.1 154 335-500 174-346 (873)
19 KOG4194 Membrane glycoprotein 97.8 2.9E-05 6.2E-10 81.2 5.4 74 425-499 174-249 (873)
20 PRK15387 E3 ubiquitin-protein 97.7 7.1E-06 1.5E-10 91.1 0.2 65 425-494 403-468 (788)
21 KOG0618 Serine/threonine phosp 97.7 2.2E-06 4.7E-11 93.6 -5.1 137 343-500 296-435 (1081)
22 PF13855 LRR_8: Leucine rich r 97.6 3.1E-05 6.8E-10 57.8 2.4 52 448-500 1-54 (61)
23 PF12799 LRR_4: Leucine Rich r 97.6 4.2E-05 9E-10 53.2 2.7 35 449-484 2-37 (44)
24 PRK15387 E3 ubiquitin-protein 97.6 5.5E-05 1.2E-09 84.2 4.7 68 425-500 383-450 (788)
25 PRK15370 E3 ubiquitin-protein 97.4 0.00015 3.2E-09 80.9 5.5 61 425-491 347-407 (754)
26 PF14580 LRR_9: Leucine-rich r 97.4 9.1E-05 2E-09 67.8 2.3 56 426-484 44-101 (175)
27 PRK15370 E3 ubiquitin-protein 97.3 0.00019 4.2E-09 80.0 4.9 144 307-491 180-323 (754)
28 PF12799 LRR_4: Leucine Rich r 97.3 0.0001 2.2E-09 51.2 1.6 38 426-465 3-40 (44)
29 PLN03210 Resistant to P. syrin 97.3 0.00035 7.6E-09 82.5 6.6 76 424-500 778-874 (1153)
30 KOG0532 Leucine-rich repeat (L 97.3 4.6E-05 9.9E-10 79.5 -0.9 119 359-499 74-193 (722)
31 PF14580 LRR_9: Leucine-rich r 97.1 0.00023 4.9E-09 65.2 1.5 72 424-500 19-93 (175)
32 KOG4579 Leucine-rich repeat (L 96.9 0.00013 2.8E-09 63.0 -1.7 57 426-484 79-136 (177)
33 KOG4237 Extracellular matrix p 96.8 0.00038 8.2E-09 69.9 0.4 87 412-499 50-144 (498)
34 KOG4658 Apoptotic ATPase [Sign 96.7 0.00061 1.3E-08 77.4 1.8 77 423-500 570-647 (889)
35 PLN03210 Resistant to P. syrin 96.5 0.0028 6.2E-08 74.9 5.4 72 425-498 635-707 (1153)
36 KOG1259 Nischarin, modulator o 96.5 0.00058 1.3E-08 66.2 -0.7 57 425-484 285-342 (490)
37 COG4886 Leucine-rich repeat (L 96.3 0.0016 3.6E-08 67.6 1.6 72 425-500 210-282 (394)
38 COG4886 Leucine-rich repeat (L 96.3 0.0012 2.5E-08 68.7 0.3 63 426-491 142-205 (394)
39 PF00560 LRR_1: Leucine Rich R 96.2 0.0021 4.7E-08 37.4 1.0 22 472-494 1-22 (22)
40 KOG4237 Extracellular matrix p 96.1 0.0015 3.3E-08 65.7 0.2 78 422-500 272-351 (498)
41 cd00116 LRR_RI Leucine-rich re 96.1 0.0018 3.8E-08 64.9 0.4 61 425-485 166-235 (319)
42 KOG4579 Leucine-rich repeat (L 95.9 0.00076 1.6E-08 58.4 -2.5 71 424-497 53-125 (177)
43 cd00116 LRR_RI Leucine-rich re 95.5 0.003 6.6E-08 63.2 -0.5 76 425-500 109-198 (319)
44 KOG3593 Predicted receptor-lik 95.4 0.013 2.8E-07 56.4 3.3 138 20-165 50-197 (355)
45 PF08263 LRRNT_2: Leucine rich 95.0 0.034 7.5E-07 38.2 3.6 36 376-416 2-43 (43)
46 KOG4658 Apoptotic ATPase [Sign 94.8 0.009 1.9E-07 68.1 0.4 74 425-500 546-623 (889)
47 KOG1859 Leucine-rich repeat pr 94.5 0.0034 7.3E-08 67.8 -3.5 71 424-500 187-259 (1096)
48 KOG1644 U2-associated snRNP A' 94.1 0.044 9.5E-07 50.7 3.2 56 426-484 44-101 (233)
49 KOG1259 Nischarin, modulator o 94.1 0.015 3.1E-07 56.8 0.1 73 423-499 306-403 (490)
50 PF00560 LRR_1: Leucine Rich R 93.8 0.02 4.3E-07 33.2 0.3 20 449-469 1-20 (22)
51 PF13504 LRR_7: Leucine rich r 92.2 0.085 1.8E-06 28.5 1.3 13 472-484 2-14 (17)
52 KOG3593 Predicted receptor-lik 91.7 0.15 3.3E-06 49.2 3.2 65 261-327 107-173 (355)
53 KOG0531 Protein phosphatase 1, 91.6 0.12 2.5E-06 54.3 2.6 57 425-484 96-153 (414)
54 KOG2982 Uncharacterized conser 91.1 0.077 1.7E-06 51.9 0.6 73 408-483 84-158 (418)
55 KOG0473 Leucine-rich repeat pr 90.9 0.012 2.6E-07 55.4 -4.9 73 424-499 42-115 (326)
56 PF13504 LRR_7: Leucine rich r 90.8 0.14 3.1E-06 27.6 1.2 17 448-465 1-17 (17)
57 KOG2739 Leucine-rich acidic nu 88.9 0.23 5.1E-06 47.7 1.9 57 425-483 66-128 (260)
58 KOG1859 Leucine-rich repeat pr 88.4 0.039 8.5E-07 59.9 -4.1 60 426-489 166-226 (1096)
59 smart00369 LRR_TYP Leucine-ric 87.3 0.42 9.1E-06 28.6 1.7 14 448-461 2-15 (26)
60 smart00370 LRR Leucine-rich re 87.3 0.42 9.1E-06 28.6 1.7 14 448-461 2-15 (26)
61 KOG3207 Beta-tubulin folding c 87.3 0.27 5.9E-06 50.6 1.3 61 423-484 245-314 (505)
62 KOG3207 Beta-tubulin folding c 87.2 0.094 2E-06 53.8 -2.1 60 424-484 222-284 (505)
63 KOG0531 Protein phosphatase 1, 86.8 0.22 4.7E-06 52.3 0.3 58 424-484 118-175 (414)
64 KOG2739 Leucine-rich acidic nu 84.0 0.64 1.4E-05 44.8 2.0 41 444-484 61-104 (260)
65 smart00370 LRR Leucine-rich re 83.1 0.85 1.8E-05 27.3 1.6 20 471-491 2-21 (26)
66 smart00369 LRR_TYP Leucine-ric 83.1 0.85 1.8E-05 27.3 1.6 20 471-491 2-21 (26)
67 smart00364 LRR_BAC Leucine-ric 81.0 0.97 2.1E-05 27.4 1.3 17 472-489 3-19 (26)
68 KOG1644 U2-associated snRNP A' 77.3 2.2 4.9E-05 39.7 3.1 74 424-500 64-145 (233)
69 KOG2982 Uncharacterized conser 76.3 1.6 3.5E-05 43.0 2.0 61 425-485 72-135 (418)
70 KOG1909 Ran GTPase-activating 74.3 3 6.6E-05 41.9 3.3 39 335-373 93-133 (382)
71 PRK15386 type III secretion pr 74.2 3.7 8E-05 42.8 4.1 62 424-494 72-137 (426)
72 KOG2123 Uncharacterized conser 70.9 0.44 9.5E-06 46.4 -3.3 74 424-500 41-122 (388)
73 PF13516 LRR_6: Leucine Rich r 69.0 0.59 1.3E-05 27.4 -1.9 14 448-461 2-15 (24)
74 PRK15386 type III secretion pr 68.7 4.5 9.7E-05 42.2 3.2 45 424-480 94-141 (426)
75 KOG3665 ZYG-1-like serine/thre 61.9 3 6.6E-05 46.6 0.5 59 424-484 173-233 (699)
76 KOG3665 ZYG-1-like serine/thre 61.9 2 4.4E-05 48.0 -0.8 76 423-500 147-225 (699)
77 smart00365 LRR_SD22 Leucine-ri 61.4 6.6 0.00014 23.8 1.7 14 448-461 2-15 (26)
78 smart00368 LRR_RI Leucine rich 57.7 7.5 0.00016 23.8 1.6 14 471-484 2-15 (28)
79 KOG3864 Uncharacterized conser 52.4 2.2 4.7E-05 39.8 -2.1 76 424-499 101-180 (221)
80 KOG0473 Leucine-rich repeat pr 50.8 0.72 1.6E-05 43.8 -5.6 59 424-484 65-124 (326)
81 KOG2230 Predicted beta-mannosi 50.6 3.5E+02 0.0077 29.5 13.2 121 241-366 29-159 (867)
82 KOG2123 Uncharacterized conser 41.5 2.6 5.6E-05 41.3 -3.5 70 426-500 21-93 (388)
83 COG5238 RNA1 Ran GTPase-activa 41.4 17 0.00036 35.7 1.8 60 424-484 92-170 (388)
84 KOG1909 Ran GTPase-activating 40.5 13 0.00028 37.6 1.0 60 425-484 93-170 (382)
85 COG5238 RNA1 Ran GTPase-activa 39.7 32 0.00069 33.8 3.4 61 424-484 120-198 (388)
86 PRK06764 hypothetical protein; 34.4 36 0.00079 26.8 2.4 19 89-107 73-91 (105)
87 KOG2120 SCF ubiquitin ligase, 29.5 19 0.00041 35.8 0.2 54 425-480 314-372 (419)
88 KOG2120 SCF ubiquitin ligase, 28.7 4.8 0.0001 39.9 -4.0 56 425-480 186-243 (419)
89 PF13306 LRR_5: Leucine rich r 25.3 1.1E+02 0.0025 25.3 4.3 53 426-481 37-91 (129)
90 PF03422 CBM_6: Carbohydrate b 23.0 4.4E+02 0.0094 21.8 9.4 38 86-128 30-68 (125)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=6.3e-85 Score=709.44 Aligned_cols=482 Identities=36% Similarity=0.650 Sum_probs=389.5
Q ss_pred HHHHHHHHHhhhhhcccCCCCccEEEecCCCCCC-cCCCCceEeecCCceecCCcccccCCCCCCCCcCceeeeeCCCCC
Q 010819 9 FFFLSLLLVLPLSLASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSG 87 (500)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~i~CG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~g 87 (500)
|.|+.+.++++..++++.+.+++|+||||++++. +|.+||+|++|..+ ++|.......+ ....++|+|+|+||..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g 80 (623)
T PLN03150 3 LWLLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDG 80 (623)
T ss_pred eHHHHHHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccc
Confidence 4444444444444444555677799999999776 67899999997444 43333222222 234578999999997779
Q ss_pred CCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeCCceEEEEeec
Q 010819 88 KKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSF 167 (500)
Q Consensus 88 ~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~~~ 167 (500)
+++||+||+.++|+|+||+||+||+||+.++.|.|||++|++.|.+....+.. ....++||+|+.++++.++|||+|+
T Consensus 81 ~~~cY~~~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~ 158 (623)
T PLN03150 81 PENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHST 158 (623)
T ss_pred cccceEeeecCCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecC
Confidence 99999999989999999999999999998888999999999776554322222 2356889999999999999999999
Q ss_pred CCCCceeeeeeeeecCCCCccccC-cCccceEEEEeeeccCCCCCCCCCCCCCCCC--CCccccCCCCCCCCCCCCceee
Q 010819 168 ATDPPVIASLEVQQIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSV 244 (500)
Q Consensus 168 ~~~~pfIn~iEl~~l~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--dR~W~~d~~~~~~~~~~~~~~~ 244 (500)
+.++||||+||||+||+++|.... .+++.+|++++|+||||......++|+||++ ||+|.+|..|..+ .+..+
T Consensus 159 ~~~~pFIs~iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~ 234 (623)
T PLN03150 159 GHGDPAILSIEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAI 234 (623)
T ss_pred CCCCCceeEEEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----ccccc
Confidence 999999999999999999996432 2456679999999999976555578999999 9999999887632 35567
Q ss_pred eeceeecCCCCCCCCchHHHHHHHhccC---CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCe-eccce
Q 010819 245 TTRERITNTNQPPNYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRV 320 (500)
Q Consensus 245 st~~~i~~~~~~~~~~P~~Vy~TA~~~~---~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~-~l~~~ 320 (500)
++...|+++...++.+|+.|||||+++. .+++|.|++++++.|+|||||||++......++|+|+|++||+ .+.++
T Consensus 235 st~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~ 314 (623)
T PLN03150 235 STENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDV 314 (623)
T ss_pred ccccccccccCCCccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeeccc
Confidence 7777787765567779999999999983 4799999999999999999999998644566799999999998 56778
Q ss_pred eeeccCCC-ccceeeeeeEeecCCCcEEEEecCcchh-hhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCC
Q 010819 321 DIFNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWN 398 (500)
Q Consensus 321 di~~~~g~-~~~~~~~l~~l~l~~n~L~~~l~~~~~~-piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~ 398 (500)
|+....|. ..+.++++.+.. .++.|++++.|..++ |+|||+|||++.+.+..+.+.|+.+|+.+|..+..+...+|+
T Consensus 315 di~~~~g~~~~~~~~~~~v~~-~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~ 393 (623)
T PLN03150 315 DIVKMSGERYTALVLNKTVAV-SGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWN 393 (623)
T ss_pred ChhhhcCCcccceEEEeEEee-cCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCC
Confidence 88766654 456666554433 457899999998877 999999999999987889999999999999988765434899
Q ss_pred CCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEE
Q 010819 399 GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477 (500)
Q Consensus 399 ~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~ 477 (500)
++||.|.. +.|.|+.|..........++.|+|++|+|+|.+|++++.|++|+.|+|++|+|+|.+|+.++. ++|+.|+
T Consensus 394 g~~C~p~~-~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~Ld 472 (623)
T PLN03150 394 GDPCVPQQ-HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472 (623)
T ss_pred CCCCCCcc-cccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 99998865 689999996432212235888999999999999999999999999999999999999988888 8999999
Q ss_pred ccCCCCCccCccccCCCCCCccC
Q 010819 478 LSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 478 Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
|++|+|+|.+|+.+++|++|++|
T Consensus 473 Ls~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 473 LSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred CCCCCCCCCCchHHhcCCCCCEE
Confidence 99999999999999998888765
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=1.4e-62 Score=498.14 Aligned_cols=319 Identities=27% Similarity=0.473 Sum_probs=245.5
Q ss_pred EecCCCCCC---cC-CCCceEeecCCceecCCcccccCC----CCCCCCcCceeeeeCCCCCCCceeEeecC--CCccEE
Q 010819 34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (500)
Q Consensus 34 i~CG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~~----~~~~~~~y~t~R~f~~~~g~~~~Y~~~v~--~~~~yl 103 (500)
||||++.+. +| .+||+|++|++|+.+|.+..++.. .....++|+|||+|| +|+|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998664 44 579999999999988887665321 134578999999999 477899999997 355999
Q ss_pred EEEEeeccCCCCCC-----CCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEee-CCceEEEEeecCCCC-ceeee
Q 010819 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (500)
Q Consensus 104 vRl~F~y~~yd~~~-----~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~v~f~~~~~~~-pfIn~ 176 (500)
|||||+|||||+++ +++.|||++|++.|.+.... .....+++||+++.+. ++.|+|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~---~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLS---NSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEec---CCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999864 25779999999986543321 1123568999888887 799999999999887 99999
Q ss_pred eeeeecCCCCccccCcCccceEEEEeeeccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCceeeeeceeec-CCCC
Q 010819 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (500)
Q Consensus 177 iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~st~~~i~-~~~~ 255 (500)
||||+||+++|+.....++.+|++++|+|||+... .+||++|++||+|.+... ...|..++++.+|+ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 99999999999533335678899999999998641 278999999999996421 23577888777776 3334
Q ss_pred CCCCchHHHHHHHhcc---C--CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeeccceeeec-cCCC-
Q 010819 256 PPNYYPMKLYQTAIVS---S--GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS- 328 (500)
Q Consensus 256 ~~~~~P~~Vy~TA~~~---~--~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l~~~di~~-~~g~- 328 (500)
.++.||.+||+||+++ + .+++|.+ ++++..|+|||||||++......++|+|+|+|||+.... ++.. ..+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 4667999999999999 2 3578877 888999999999999998545556899999999996543 4332 2222
Q ss_pred ccceeeeeeEeecCCCcEEEEecCcchh---hhhhccccccc
Q 010819 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (500)
Q Consensus 329 ~~~~~~~l~~l~l~~n~L~~~l~~~~~~---piLnalEi~~l 367 (500)
..+.+.++.+....+..+.++|.+..++ |+|||+|||++
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3344444444433445788899998776 99999999985
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.88 E-value=2.8e-22 Score=218.72 Aligned_cols=317 Identities=17% Similarity=0.235 Sum_probs=193.1
Q ss_pred EEEecCCCCCC--cC----CC--CceEeecCCceecCC-c----cccc----CCCCCCCCcCceeeeeCCCCCCCceeEe
Q 010819 32 YRIDCGSATST--TD----PF--NTTWQADDRYYTSGA-T----SIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYII 94 (500)
Q Consensus 32 ~~i~CG~~~~~--~d----~~--~~~w~~Dd~~~~~g~-~----~~~~----~~~~~~~~~y~t~R~f~~~~g~~~~Y~~ 94 (500)
+|||||++... .| .. .|.|.+|+.|..... . ..+. .++..|..+|+|||.+... ....+|+|
T Consensus 194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~~ 272 (623)
T PLN03150 194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYTM 272 (623)
T ss_pred EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEEe
Confidence 69999986432 22 22 699999877653211 1 1111 1223456799999998752 23469999
Q ss_pred ecCCCccEEEEEEeeccCC-CCCCCCCceEEEECCEEEEecCCCCcccc-CCCceEEEEEEEeeCCceEEEEeecCCCCc
Q 010819 95 PNLPPGRYYIRTFTVYDNY-DGKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPP 172 (500)
Q Consensus 95 ~v~~~~~ylvRl~F~y~~y-d~~~~~~~F~v~~~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~v~f~~~~~~~p 172 (500)
++++++.|+|||||..-.. ......++|+|++||+.+++.+++....+ ...++++++.+.+.++.+.|+|+|.....|
T Consensus 273 ~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p 352 (623)
T PLN03150 273 DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA 352 (623)
T ss_pred ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence 9988899999999964321 11224689999999999999888744322 235788899888888889999999876679
Q ss_pred eeeeeeeeecCCCCccccCcCccceEEEEeeeccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCceeeeeceeecC
Q 010819 173 VIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITN 252 (500)
Q Consensus 173 fIn~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~st~~~i~~ 252 (500)
|||||||+++-..-..+. .....+|..+. -..+ ++..--|..|
T Consensus 353 ilNaiEI~~~~~~~~~t~-~~~~~aL~~~k-~~~~------------~~~~~~W~g~----------------------- 395 (623)
T PLN03150 353 IINAIEVFEIITAESKTL-LEEVSALQTLK-SSLG------------LPLRFGWNGD----------------------- 395 (623)
T ss_pred eeeeeeeeeccccccccC-chHHHHHHHHH-HhcC------------CcccCCCCCC-----------------------
Confidence 999999998765211100 00011111110 0000 0000013211
Q ss_pred CCCCCCCchHHHHHHHhccCCceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeeccceeeeccCCCccce
Q 010819 253 TNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAY 332 (500)
Q Consensus 253 ~~~~~~~~P~~Vy~TA~~~~~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l~~~di~~~~g~~~~~ 332 (500)
+..++ ...|. ++.|.. +.. . +.
T Consensus 396 ----~C~p~------------~~~w~--------------------Gv~C~~--------~~~--~--------~~---- 417 (623)
T PLN03150 396 ----PCVPQ------------QHPWS--------------------GADCQF--------DST--K--------GK---- 417 (623)
T ss_pred ----CCCCc------------ccccc--------------------cceeec--------cCC--C--------Cc----
Confidence 00000 00110 111110 000 0 00
Q ss_pred eeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 010819 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (500)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~ 411 (500)
..+..++++++.|.+.+|+..+. +..|+.+.+..|. .+.+|.++..
T Consensus 418 -~~v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~l~g~iP~~~~~------------------------------ 464 (623)
T PLN03150 418 -WFIDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLGS------------------------------ 464 (623)
T ss_pred -eEEEEEECCCCCccccCCHHHhC--CCCCCEEECCCCcccCcCChHHhC------------------------------
Confidence 01234556777777777776665 6667777776665 3344432111
Q ss_pred eeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCc
Q 010819 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP 488 (500)
+..|+.|+|++|+|+|.+|+.+++|++|+.|+|++|+|+|.+|..++. .++..+++.+|.....+|
T Consensus 465 -----------l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 465 -----------ITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred -----------CCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 123677889999999999999999999999999999999999988876 567788888887554455
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.69 E-value=3.5e-17 Score=150.09 Aligned_cols=141 Identities=28% Similarity=0.400 Sum_probs=90.0
Q ss_pred cEEEecCCCCCCcCCCCceEeecCCceecCCcc------------cccC--CCCCCCCcCceeeeeCCCCCCCceeEeec
Q 010819 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSE--PLHFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (500)
Q Consensus 31 ~~~i~CG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~~~--~~~~~~~~y~t~R~f~~~~g~~~~Y~~~v 96 (500)
.++||||++.. +|..|..|.+|. ++.+|... .... .....+.+|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~D~-~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEADQ-YYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-SSS-SSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcCCC-CCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 37999999865 778999999954 44433320 0001 11223579999999764 28999997
Q ss_pred CCCccEEEEEEeeccCCCC-----CCCCCceEEEECCEEEEecCCCCccccCCC-ceEEEE-EEEeeCCceEEEEee---
Q 010819 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (500)
Q Consensus 97 ~~~~~ylvRl~F~y~~yd~-----~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~v~f~~--- 166 (500)
.++|.|.|||||...-+.. ....++|||+++|..+++++|++.+++... ++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 6999999999994322221 123789999999999999999988876554 677887 456799999999996
Q ss_pred --------cCCCCceeeee
Q 010819 167 --------FATDPPVIASL 177 (500)
Q Consensus 167 --------~~~~~pfIn~i 177 (500)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 33566888886
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.62 E-value=2.4e-16 Score=144.55 Aligned_cols=153 Identities=24% Similarity=0.393 Sum_probs=90.1
Q ss_pred EeeeccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCceeeee--ceeecCCCCCCCCchHHHHHHHhccCCceEEE
Q 010819 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTT--RERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (500)
Q Consensus 201 ~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~st--~~~i~~~~~~~~~~P~~Vy~TA~~~~~~lt~~ 278 (500)
++|+||||.. + +|..++.|.+|..|..+... ...-.. ..........+...+..+|||+|.....++|.
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~--y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~ 72 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWG--YYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYD 72 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS-------------SSTTS--TTS-HHHHHTTT-----SSSEEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcc--cccccccccccccccccccCCCchhhhHhhcCCCCceEEE
Confidence 5899999874 2 57899999999988654330 000000 00011111112235678999999864479999
Q ss_pred EecCCCCcEEEEEEEEeeccCC----CCCcceEEEEEECCe-eccceeeeccCCCcc-ceeeeeeEeecCCCcEEEEec-
Q 010819 279 LAVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV- 351 (500)
Q Consensus 279 ~~v~~~~~y~v~lhF~Ei~~~~----~~~~~R~F~I~lng~-~l~~~di~~~~g~~~-~~~~~l~~l~l~~n~L~~~l~- 351 (500)
+|+.+++.|.|+|||+|+.... ...++|+|||++||+ .+.++|++..+|+.. +....+......++.|.+.+.
T Consensus 73 ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~ 152 (174)
T PF11721_consen 73 IPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVW 152 (174)
T ss_dssp EE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEE
T ss_pred EecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEe
Confidence 9966788999999999988642 237899999999998 688999999887743 555555233446677777776
Q ss_pred -----------Ccchhhhhhcc
Q 010819 352 -----------PVVGAALISGL 362 (500)
Q Consensus 352 -----------~~~~~piLnal 362 (500)
+..++|+++||
T Consensus 153 ~~~~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 153 AGKGTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp E--SEEEEEEESSSSSSSEEEE
T ss_pred cCCCcEEeeccccCCCcEEeeC
Confidence 55555777664
No 6
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.16 E-value=1.7e-10 Score=117.57 Aligned_cols=151 Identities=22% Similarity=0.310 Sum_probs=97.3
Q ss_pred cEEEecCCCC--CC--cCCCCceEeec---CCc--eecCCccc---ccCCCCCCCCcCceeeeeCCCCC-CCceeEeecC
Q 010819 31 SYRIDCGSAT--ST--TDPFNTTWQAD---DRY--YTSGATSI---VSEPLHFRFPHEKTLRYFPPSSG-KKNCYIIPNL 97 (500)
Q Consensus 31 ~~~i~CG~~~--~~--~d~~~~~w~~D---d~~--~~~g~~~~---~~~~~~~~~~~y~t~R~f~~~~g-~~~~Y~~~v~ 97 (500)
.+|+|||++. .. .|.-.|.|.+. ... +.+..+.. .......|..+|+|||....... -..+|.+ ++
T Consensus 180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~ 258 (347)
T PF12819_consen 180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD 258 (347)
T ss_pred EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence 3699999986 22 45678999962 111 11111111 11233567789999999875321 1337777 77
Q ss_pred CCccEEEEEEeeccCCC-CCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeC-CceEEEEeecCCC--Cce
Q 010819 98 PPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPV 173 (500)
Q Consensus 98 ~~~~ylvRl~F~y~~yd-~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~v~f~~~~~~--~pf 173 (500)
++..|+|||||..=... .....++|+|++||+.+.+.+++........+.++++++.+.+ +.+.|+|+++..+ -|+
T Consensus 259 ~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi 338 (347)
T PF12819_consen 259 PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI 338 (347)
T ss_pred CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence 77899999999521111 1122689999999999776444322221233457888887765 4689999999765 499
Q ss_pred eeeeeeeec
Q 010819 174 IASLEVQQI 182 (500)
Q Consensus 174 In~iEl~~l 182 (500)
|||+||..|
T Consensus 339 LNalEIy~v 347 (347)
T PF12819_consen 339 LNALEIYKV 347 (347)
T ss_pred eEeeeeEeC
Confidence 999999865
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.05 E-value=1e-11 Score=109.88 Aligned_cols=141 Identities=23% Similarity=0.365 Sum_probs=87.7
Q ss_pred eeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceeee
Q 010819 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (500)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~c 415 (500)
.+.+.++.|+++ .+||.+.. |-.+|++.+.++++..+|..+..|.++|- +.+. ...+..
T Consensus 35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~-lnvg-----------------mnrl~~ 93 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRI-LNVG-----------------MNRLNI 93 (264)
T ss_pred hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhh-eecc-----------------hhhhhc
Confidence 445668899999 67888877 88899999999999999999999998875 2221 111112
Q ss_pred cCCCCCceeeEEEEEeCCCCCCc-cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCC
Q 010819 416 HPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
.+.+.++.+.++.|||+.|+|+. .+|..|..|+.|+-|.|+.|.|. .+|+.+++ ++||.|.+..|.|- ++|.+++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 22333444456666666666653 34555555555555555555555 55555555 55555555555554 45555555
Q ss_pred CCCCcc
Q 010819 494 SSKLQL 499 (500)
Q Consensus 494 l~~L~~ 499 (500)
|++|++
T Consensus 172 lt~lre 177 (264)
T KOG0617|consen 172 LTRLRE 177 (264)
T ss_pred HHHHHH
Confidence 555443
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.95 E-value=4e-10 Score=130.45 Aligned_cols=147 Identities=27% Similarity=0.396 Sum_probs=103.9
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|.+.+.+|...+. +..++.+.+..+. .+.+|.++..+..|+.. .+.. + ...+.
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~L~~----n----------~l~~~ 227 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLKWI-YLGY----N----------NLSGE 227 (968)
T ss_pred CCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCccEE-ECcC----C----------ccCCc
Confidence 5666677777766666666555 6667777776665 45566666666655542 2211 0 11110
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccC
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
. +.....+..|+.|+|++|.++|.+|..+++|++|+.|+|++|.++|.+|..+.. ++|+.|+|++|+++|.+|..+.
T Consensus 228 ~--p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 228 I--PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred C--ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 0 011122345888999999999999999999999999999999999999988888 8999999999999999998888
Q ss_pred CCCCCccC
Q 010819 493 SSSKLQLV 500 (500)
Q Consensus 493 ~l~~L~~L 500 (500)
++++|+.|
T Consensus 306 ~l~~L~~L 313 (968)
T PLN00113 306 QLQNLEIL 313 (968)
T ss_pred CCCCCcEE
Confidence 88888764
No 9
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.93 E-value=4.3e-10 Score=130.25 Aligned_cols=148 Identities=28% Similarity=0.317 Sum_probs=117.6
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
..+..+++++|.+.+.+|...+. +..++.+.+..+. .+.+|.++..+..|+. +.+... ...+
T Consensus 188 ~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~-L~L~~n--------------~l~~ 250 (968)
T PLN00113 188 TSLEFLTLASNQLVGQIPRELGQ--MKSLKWIYLGYNNLSGEIPYEIGGLTSLNH-LDLVYN--------------NLTG 250 (968)
T ss_pred cCCCeeeccCCCCcCcCChHHcC--cCCccEEECcCCccCCcCChhHhcCCCCCE-EECcCc--------------eecc
Confidence 46788889999999888887776 7788888888876 5678888877776654 322211 1111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
... .....+..|+.|+|++|.+.|.+|.++.++++|+.|+|++|++.|.+|..+.. ++|+.|+|++|.++|.+|..+
T Consensus 251 ~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 251 PIP--SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccC--hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 110 11122345889999999999999999999999999999999999999999988 999999999999999999999
Q ss_pred CCCCCCccC
Q 010819 492 TSSSKLQLV 500 (500)
Q Consensus 492 ~~l~~L~~L 500 (500)
.++++|+.|
T Consensus 329 ~~l~~L~~L 337 (968)
T PLN00113 329 TSLPRLQVL 337 (968)
T ss_pred hcCCCCCEE
Confidence 999998864
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.51 E-value=1.7e-08 Score=105.03 Aligned_cols=159 Identities=23% Similarity=0.323 Sum_probs=83.7
Q ss_pred eeeeEeecCCCcEEEEecCcc-hhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCC-CC-C--CCCCCCC-CCC
Q 010819 334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDR-MG-W--NGDPCAP-TNW 407 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~-~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~-~~-w--~~~pc~~-~~~ 407 (500)
+..-+++++.|++. +||-.. .. |.-+-.+++++|...++|+.+..|..|+. +.++++ .. . ..-|... -+.
T Consensus 126 Kn~iVLNLS~N~Ie-tIPn~lfin--LtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt-L~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIE-TIPNSLFIN--LTDLLFLDLSNNRLEMLPPQIRRLSMLQT-LKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred cCcEEEEcccCccc-cCCchHHHh--hHhHhhhccccchhhhcCHHHHHHhhhhh-hhcCCChhhHHHHhcCccchhhhh
Confidence 34556777777766 555332 12 33444567787778888888888887765 322221 00 0 0001100 000
Q ss_pred CCCce----eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCC
Q 010819 408 DAWEG----ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ 482 (500)
Q Consensus 408 ~~w~g----v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~ 482 (500)
...++ +.-.+.....+..|..+|||.|.|. .+|+-+-+|.+|+.|+||+|+++ .+--..+. .+|+.|+||.||
T Consensus 202 Lhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccch
Confidence 00000 0000111112234556667777766 56666666666777777776666 44444444 666666666666
Q ss_pred CCccCccccCCCCCCcc
Q 010819 483 FTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 483 l~G~iP~~l~~l~~L~~ 499 (500)
|+ .+|+.+.+|++|+.
T Consensus 280 Lt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 280 LT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hc-cchHHHhhhHHHHH
Confidence 66 66666666666654
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.40 E-value=5.9e-09 Score=92.56 Aligned_cols=67 Identities=27% Similarity=0.487 Sum_probs=51.8
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~ 495 (500)
+..|+|+.|.+. .+|+++++|++||.|.+..|.|- ++|.+++. ++|+.|++.+|.|+ .+|++++++.
T Consensus 129 lralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 129 LRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 344566666666 77888888888888888888887 78888888 88888888888888 7787777664
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.39 E-value=2.6e-08 Score=99.10 Aligned_cols=140 Identities=24% Similarity=0.369 Sum_probs=98.3
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~ 414 (500)
++..+.+.+|++. .+|+..-. +.-+.-++...|..+++|++++.|.++.-.+.-.+.. ..-| .+. .
T Consensus 161 ~l~~l~~~~n~l~-~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki--~~lP-------ef~--g 226 (565)
T KOG0472|consen 161 KLSKLDLEGNKLK-ALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI--RFLP-------EFP--G 226 (565)
T ss_pred HHHHhhccccchh-hCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc--ccCC-------CCC--c
Confidence 3445556666665 44544332 3344455556666888888888888876544321110 0011 111 1
Q ss_pred ecCCCCCceeeEEEEEeCCCCCCccCCcccc-cCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccC
Q 010819 415 CHPNKDETAVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
| ..+.+|.++.|++. .+|.+++ .|.+|..|||..|++. ++|++++. ++|++||||+|.++ .+|.++|
T Consensus 227 c--------s~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 227 C--------SLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred c--------HHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 2 23677889999988 7888877 8999999999999999 89999999 99999999999999 7899999
Q ss_pred CCCCCccC
Q 010819 493 SSSKLQLV 500 (500)
Q Consensus 493 ~l~~L~~L 500 (500)
+| +|+.|
T Consensus 296 nl-hL~~L 302 (565)
T KOG0472|consen 296 NL-HLKFL 302 (565)
T ss_pred cc-eeeeh
Confidence 98 77654
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.31 E-value=1.1e-07 Score=99.10 Aligned_cols=142 Identities=24% Similarity=0.333 Sum_probs=71.7
Q ss_pred eeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceeee
Q 010819 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (500)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~c 415 (500)
++-+.+...+|. .+|.+.+. +..+|.+.++.|...++-.++..|..|+....-.+...-.|-| ....
T Consensus 34 ~~WLkLnrt~L~-~vPeEL~~--lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP---~diF------- 100 (1255)
T KOG0444|consen 34 MTWLKLNRTKLE-QVPEELSR--LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIP---TDIF------- 100 (1255)
T ss_pred eeEEEechhhhh-hChHHHHH--HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCC---chhc-------
Confidence 344445555555 55555554 6677777777766555555555555554432111110011111 1100
Q ss_pred cCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCccccCC
Q 010819 416 HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 416 ~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
.+..|+.||||+|+|. .+|..+..-+++..|+||+|++. +||..+.. +.|-.||||+|.|. .+|+.+..
T Consensus 101 ------~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR 171 (1255)
T KOG0444|consen 101 ------RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR 171 (1255)
T ss_pred ------ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHH
Confidence 1123555666666665 55555555555566666666655 55554443 55555566666555 55555544
Q ss_pred CCCCcc
Q 010819 494 SSKLQL 499 (500)
Q Consensus 494 l~~L~~ 499 (500)
|..|+.
T Consensus 172 L~~Lqt 177 (1255)
T KOG0444|consen 172 LSMLQT 177 (1255)
T ss_pred Hhhhhh
Confidence 444443
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.28 E-value=4.2e-08 Score=97.61 Aligned_cols=152 Identities=24% Similarity=0.335 Sum_probs=92.0
Q ss_pred eeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC---CC--
Q 010819 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWD---AW-- 410 (500)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~---~w-- 410 (500)
++++.+.+|++. ++||..|. +.++.-+.++.+....+|+++..+..++...-..+ .--|.+..+. ..
T Consensus 70 l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-----~~~el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-----ELKELPDSIGRLLDLED 141 (565)
T ss_pred eeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-----ceeecCchHHHHhhhhh
Confidence 456666777776 77777766 55555566666666667777776666655332111 0001000000 00
Q ss_pred -----ceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 411 -----EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 411 -----~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
..+...+...+.+.++..+++.+|++. .+|+..-++++|++||+-+|.|. .+|+.++. .+|+.|+|..|++.
T Consensus 142 l~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 000000111112234667788888887 45555555888888888888886 88888888 88888888888888
Q ss_pred ccCccccCCCCCCcc
Q 010819 485 GSIPDSLTSSSKLQL 499 (500)
Q Consensus 485 G~iP~~l~~l~~L~~ 499 (500)
.+| +|+.++.|++
T Consensus 220 -~lP-ef~gcs~L~E 232 (565)
T KOG0472|consen 220 -FLP-EFPGCSLLKE 232 (565)
T ss_pred -cCC-CCCccHHHHH
Confidence 777 6777776654
No 15
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=5.5e-07 Score=67.43 Aligned_cols=59 Identities=34% Similarity=0.474 Sum_probs=51.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l 483 (500)
.++.|++++|+++...+..|..+++|++|++++|+++..-|..+.. ++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3788999999999655578899999999999999999665566777 9999999999985
No 16
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.06 E-value=4.1e-07 Score=94.36 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=107.0
Q ss_pred EECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcC
Q 010819 311 LVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLR 390 (500)
Q Consensus 311 ~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~ 390 (500)
.++|..++.++. ++......+.+..+++.|++. .+|..... +..+|.+-+..|..-++|..+..|..+.....
T Consensus 56 ~Ls~rrlk~fpr----~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~l 128 (722)
T KOG0532|consen 56 LLSGRRLKEFPR----GAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDL 128 (722)
T ss_pred ccccchhhcCCC----ccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhh
Confidence 345554555542 222222334444566777776 55554443 44566666666777778877777776644222
Q ss_pred CCCCCCCCCC-CCC-CCC--CCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC
Q 010819 391 VPDRMGWNGD-PCA-PTN--WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS 466 (500)
Q Consensus 391 ~~~~~~w~~~-pc~-~~~--~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~ 466 (500)
..+..+--.+ -|. |-+ ...=+-+.|.+...+....+..||.+.|.+. .+|..++.|++|+.|.+..|++. .+|+
T Consensus 129 s~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 1111111111 111 000 0001122333333333445667777777777 77777888888888888888877 7788
Q ss_pred ccccCCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 467 GLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 467 ~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+++.-.|..||+|.|+++ .||-.+.+|..|++|
T Consensus 207 El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l 239 (722)
T KOG0532|consen 207 ELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVL 239 (722)
T ss_pred HHhCCceeeeecccCcee-ecchhhhhhhhheee
Confidence 777766889999999998 899999999998875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.03 E-value=7.3e-07 Score=97.15 Aligned_cols=143 Identities=27% Similarity=0.318 Sum_probs=88.3
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhc-ccccccccCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISG-LENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLna-lEi~~l~~~~~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~ 411 (500)
+.+..+++..|+|. .+|+..- .++++ ++.+..+.+...++|.- -..+..++..+.. + +.-+|.|. .
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-n--N~Ltd~c~-------p 377 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-N--NHLTDSCF-------P 377 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-c--Ccccccch-------h
Confidence 45677778888776 6666332 23444 56666666655555432 1222233332221 1 33345553 3
Q ss_pred eeeecCCCCCceeeEEEEEeCCCCCCccCCc-ccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 412 GITCHPNKDETAVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
-+.|. .+|+.|+|++|+|. .+|. .+.+|..|+.|+||+|+|+ .||+.+.. ..|++|...+|++. .+|
T Consensus 378 ~l~~~-------~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP- 446 (1081)
T KOG0618|consen 378 VLVNF-------KHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP- 446 (1081)
T ss_pred hhccc-------cceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-
Confidence 33332 34788888888887 4544 5778888888888888888 78877777 77777777777776 667
Q ss_pred ccCCCCCCcc
Q 010819 490 SLTSSSKLQL 499 (500)
Q Consensus 490 ~l~~l~~L~~ 499 (500)
++.++++|++
T Consensus 447 e~~~l~qL~~ 456 (1081)
T KOG0618|consen 447 ELAQLPQLKV 456 (1081)
T ss_pred hhhhcCcceE
Confidence 6677776664
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.00 E-value=2.5e-06 Score=88.81 Aligned_cols=154 Identities=22% Similarity=0.280 Sum_probs=98.7
Q ss_pred eeeEeecCCCcEEEEecC-cchhhhhhcccccccccCCCCCChhHHHH-HHHHHHhcCCCCC----CCC---CCCCCCCC
Q 010819 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQVIA-MRALKESLRVPDR----MGW---NGDPCAPT 405 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~~~~t~p~~~~~-l~~lk~~l~~~~~----~~w---~~~pc~~~ 405 (500)
.+..+++++|.++ .+.. .+.+ +|.+-.++++.|...++|.-... |.+|+. +.+..+ ..| +|-|-
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~-LdLnrN~irive~ltFqgL~S--- 246 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLES-LDLNRNRIRIVEGLTFQGLPS--- 246 (873)
T ss_pred CceEEeecccccc-ccccccccc--cchheeeecccCcccccCHHHhhhcchhhh-hhccccceeeehhhhhcCchh---
Confidence 4556677777665 3222 2333 67777778887777777765433 666654 222211 012 11110
Q ss_pred CCCCCceeeecCCC--------CCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEE
Q 010819 406 NWDAWEGITCHPNK--------DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL 476 (500)
Q Consensus 406 ~~~~w~gv~c~~~~--------~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L 476 (500)
...+....++ ...+..+++|+|+.|++...-..++-+|++|+.|+||.|.+...-++.|.. ++|++|
T Consensus 247 ----l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 247 ----LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKEL 322 (873)
T ss_pred ----hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeE
Confidence 1111110000 112234789999999999777778899999999999999999888999998 999999
Q ss_pred EccCCCCCccCcc-ccCCCCCCccC
Q 010819 477 DLSDNQFTGSIPD-SLTSSSKLQLV 500 (500)
Q Consensus 477 ~Ls~N~l~G~iP~-~l~~l~~L~~L 500 (500)
+|++|+++ ++|+ ++..|.+|++|
T Consensus 323 dLs~N~i~-~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 323 DLSSNRIT-RLDEGSFRVLSQLEEL 346 (873)
T ss_pred eccccccc-cCChhHHHHHHHhhhh
Confidence 99999999 6665 45556665543
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.78 E-value=2.9e-05 Score=81.16 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=51.4
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.++.|+|++|.++..-...|.+|.+|..|.|+.|.++ .+|..... ++|+.|+|..|++.=.---.+..|++|+.
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~n 249 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQN 249 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhh
Confidence 3778888888887555667888888888888888888 67765444 78888888888775111224555555553
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.73 E-value=7.1e-06 Score=91.08 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=52.6
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l 494 (500)
.++.|++++|.|++ +|.. ..+|+.|+|++|+|+ .||+.++. ++|+.|+|++|+|+|.+|..+.++
T Consensus 403 ~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 47788888888884 6754 346778999999998 88998888 999999999999999988776443
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.65 E-value=2.2e-06 Score=93.60 Aligned_cols=137 Identities=22% Similarity=0.371 Sum_probs=95.2
Q ss_pred CCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHH-HHhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCC
Q 010819 343 STELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL-KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDE 421 (500)
Q Consensus 343 ~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~l-k~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~ 421 (500)
.|.+. .+|+.... ++.++.+++..|.++.+|..+.+.... -..+..+.. .-..-||. . ..
T Consensus 296 ~nel~-yip~~le~--~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~-------------~--e~ 356 (1081)
T KOG0618|consen 296 YNELE-YIPPFLEG--LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSY-------------E--EN 356 (1081)
T ss_pred hhhhh-hCCCcccc--cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhc-cccccccc-------------c--ch
Confidence 34444 44444443 667778888888888888754443333 111221110 00111221 0 11
Q ss_pred ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
+...|+.|.|.+|.|+..+=+-+-+.++|+.|+|++|.|. .+|+..-+ ..|+.|+||+|+|+ .||..+.++..|++
T Consensus 357 ~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 357 NHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred hhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 2245888999999999998888999999999999999998 88886544 89999999999999 99999999998876
Q ss_pred C
Q 010819 500 V 500 (500)
Q Consensus 500 L 500 (500)
|
T Consensus 435 L 435 (1081)
T KOG0618|consen 435 L 435 (1081)
T ss_pred H
Confidence 5
No 22
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.63 E-value=3.1e-05 Score=57.83 Aligned_cols=52 Identities=35% Similarity=0.577 Sum_probs=43.5
Q ss_pred CCCCeEEcccCCCCccCCC-cccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 448 SNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP~-~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
++|+.|++++|+++ .||+ .+.. ++|+.|++++|+++.--|..+..+++|++|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L 54 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYL 54 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEE
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEE
Confidence 46899999999999 5564 5666 999999999999996555688999999864
No 23
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=4.2e-05 Score=53.15 Aligned_cols=35 Identities=40% Similarity=0.619 Sum_probs=17.8
Q ss_pred CCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 449 NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 449 ~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
+|++|+|++|+++ .+|+.++. ++|+.|+|++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 45544555 55555555555554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.60 E-value=5.5e-05 Score=84.16 Aligned_cols=68 Identities=28% Similarity=0.318 Sum_probs=56.3
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.|++ +|.. ..+|+.|+|++|+|+ .+|... .+|+.|+|++|+++ .||..++++++|+.|
T Consensus 383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~--~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP--SGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch--hhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 47889999999984 6654 367899999999998 578532 57889999999998 899999999888754
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.44 E-value=0.00015 Score=80.93 Aligned_cols=61 Identities=23% Similarity=0.483 Sum_probs=43.8
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCcccc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l 491 (500)
.|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|+ .+|+.+. ..|+.|++++|+|+ .+|..+
T Consensus 347 sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-~sL~~LdLs~N~L~-~LP~sl 407 (754)
T PRK15370 347 ELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-AALQIMQASRNNLV-RLPESL 407 (754)
T ss_pred cccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH-HHHHHHhhccCCcc-cCchhH
Confidence 4777888888887 5666553 57888888888887 5676543 46888888888887 666544
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.38 E-value=9.1e-05 Score=67.78 Aligned_cols=56 Identities=27% Similarity=0.477 Sum_probs=16.4
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccc-c-CCccEEEccCCCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFT 484 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~-~-~~L~~L~Ls~N~l~ 484 (500)
++.|+|++|.++ .++ .+..|++|+.|++++|.++ .+++.+. . ++|+.|+|++|++.
T Consensus 44 L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 44 LEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKIS 101 (175)
T ss_dssp --EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---
T ss_pred CCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCC
Confidence 555666666655 232 3555566666666666665 3443332 2 55666666666554
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.34 E-value=0.00019 Score=80.04 Aligned_cols=144 Identities=18% Similarity=0.340 Sum_probs=92.4
Q ss_pred EEEEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHH
Q 010819 307 VFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALK 386 (500)
Q Consensus 307 ~F~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk 386 (500)
...+.+++..++.++. .+. ..+..+.+++|+|+ ++|.... ..++.+.+..|....+|..+.. .|+
T Consensus 180 ~~~L~L~~~~LtsLP~-----~Ip---~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~--~L~ 244 (754)
T PRK15370 180 KTELRLKILGLTTIPA-----CIP---EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPD--TIQ 244 (754)
T ss_pred ceEEEeCCCCcCcCCc-----ccc---cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhc--ccc
Confidence 3456777766655442 111 14667788999888 6765433 4688888888877778764322 232
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC
Q 010819 387 ESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS 466 (500)
Q Consensus 387 ~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~ 466 (500)
. +.++. + ....+ +.. ....|+.|+|++|+|+ .+|..+. .+|+.|+|++|+|+ .+|.
T Consensus 245 ~-L~Ls~----N----------~L~~L---P~~--l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~ 300 (754)
T PRK15370 245 E-MELSI----N----------RITEL---PER--LPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPA 300 (754)
T ss_pred E-EECcC----C----------ccCcC---Chh--HhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcc
Confidence 2 22211 1 01100 000 0124788999999999 6787765 58999999999999 5776
Q ss_pred ccccCCccEEEccCCCCCccCcccc
Q 010819 467 GLGQQSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 467 ~l~~~~L~~L~Ls~N~l~G~iP~~l 491 (500)
.+. .+|+.|+|++|+|+ .+|..+
T Consensus 301 ~lp-~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 301 HLP-SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred cch-hhHHHHHhcCCccc-cCCccc
Confidence 432 57999999999999 577644
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.33 E-value=0.0001 Score=51.23 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=32.9
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP 465 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP 465 (500)
|+.|++++|+++ .+|+++++|++|+.|++++|+++ .+|
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 788999999999 78989999999999999999998 443
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.30 E-value=0.00035 Score=82.50 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=53.9
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccccC---------------------CccEEEccCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQ---------------------SLVRLDLSDNQ 482 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~---------------------~L~~L~Ls~N~ 482 (500)
..|+.|+|++|...+.+|.++++|++|+.|+|++|..-+.+|..+..+ +|+.|+|++|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~ 857 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTG 857 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCC
Confidence 357888898888888899999999999999998876555777643113 45556666666
Q ss_pred CCccCccccCCCCCCccC
Q 010819 483 FTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 483 l~G~iP~~l~~l~~L~~L 500 (500)
++ .+|.++..+++|+.|
T Consensus 858 i~-~iP~si~~l~~L~~L 874 (1153)
T PLN03210 858 IE-EVPWWIEKFSNLSFL 874 (1153)
T ss_pred Cc-cChHHHhcCCCCCEE
Confidence 65 567666666666543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.28 E-value=4.6e-05 Score=79.52 Aligned_cols=119 Identities=26% Similarity=0.333 Sum_probs=70.6
Q ss_pred hhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCc
Q 010819 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG 438 (500)
Q Consensus 359 LnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g 438 (500)
+.-....++..|...++|.++.++..+.......+ -..|.|...|+ +..++.|+|+.|+++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-----~~r~ip~~i~~-------------L~~lt~l~ls~NqlS- 134 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-----CIRTIPEAICN-------------LEALTFLDLSSNQLS- 134 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhc-----cceecchhhhh-------------hhHHHHhhhccchhh-
Confidence 44444556777778889999888887765433211 11222221111 123555666666666
Q ss_pred cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 439 ~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.+|..++.|. |+.|-+++|+++ .+|+.++. ..|..||.+.|++. ++|..++.|.+|+.
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 6666666665 666666666666 66666666 66666666666666 66666666665543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.06 E-value=0.00023 Score=65.18 Aligned_cols=72 Identities=32% Similarity=0.492 Sum_probs=23.7
Q ss_pred eeEEEEEeCCCCCCccCCcccc-cCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc-CCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L 500 (500)
..+++|+|++|.++ .| +.++ .|.+|+.|+|++|.++ .++ .+.. +.|+.|+|++|+++ .+.+.+ ..+++|++|
T Consensus 19 ~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 35788999999998 45 4566 6889999999999999 565 4556 99999999999998 676544 356777654
No 32
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.87 E-value=0.00013 Score=62.99 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=27.4
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
++.|+|++|.++ .+|.++..++.|+.|+++.|.|. ..|.-+.. .+|-.|+..+|...
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 344455555554 44444555555555555555554 34444444 44444554444443
No 33
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.78 E-value=0.00038 Score=69.89 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=65.2
Q ss_pred eeeecCCCCC-----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEE-EccCCCCC
Q 010819 412 GITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL-DLSDNQFT 484 (500)
Q Consensus 412 gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L-~Ls~N~l~ 484 (500)
-|.|...+.. -+...++|+|..|+++-..|..|+.|++|+.||||+|+++-.-|+.+.. ++|..| ++++|+++
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 3667644321 1234688999999999666778999999999999999999777887777 665554 55669998
Q ss_pred ccCcc-ccCCCCCCcc
Q 010819 485 GSIPD-SLTSSSKLQL 499 (500)
Q Consensus 485 G~iP~-~l~~l~~L~~ 499 (500)
.+|+ .++.|.+|+.
T Consensus 130 -~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 130 -DLPKGAFGGLSSLQR 144 (498)
T ss_pred -hhhhhHhhhHHHHHH
Confidence 7886 5777776653
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.74 E-value=0.00061 Score=77.36 Aligned_cols=77 Identities=29% Similarity=0.418 Sum_probs=67.7
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
++.+..|||++|.=-+.+|.+|+.|-+|++|+|++..+. .+|..+++ +.|.+||+..+.-...+|..+..|++|++|
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVL 647 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEE
Confidence 356889999998877899999999999999999999999 89999999 999999999987766777777778888875
No 35
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.52 E-value=0.0028 Score=74.94 Aligned_cols=72 Identities=28% Similarity=0.285 Sum_probs=37.4
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 498 (500)
.|+.|+|+++..-+.+| .++.+++|+.|+|++|.....+|..++. ++|+.|++++|..-+.+|..+ ++++|+
T Consensus 635 ~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~ 707 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLY 707 (1153)
T ss_pred CCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCC
Confidence 35555555544333444 3555555566666555544555555555 556666665544444555543 344443
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.46 E-value=0.00058 Score=66.25 Aligned_cols=57 Identities=30% Similarity=0.436 Sum_probs=36.8
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
.++++|||+|.++ .|-+++.-++.++.|++|+|.+. .+- .++. .+|+.||||+|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH
Confidence 3666777777766 56666666677777777777665 332 2445 66777777777665
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.31 E-value=0.0016 Score=67.56 Aligned_cols=72 Identities=36% Similarity=0.548 Sum_probs=55.4
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.+++|.+++|.+. .++..+.+++.+..|.+++|++. .+|..++. .+|+.|++++|+++ .++. ++.+.+|+.|
T Consensus 210 ~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L 282 (394)
T COG4886 210 ALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLREL 282 (394)
T ss_pred hhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEE
Confidence 3777888888543 56777888888888888888887 45677777 77999999999998 6766 7777777654
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.29 E-value=0.0012 Score=68.72 Aligned_cols=63 Identities=33% Similarity=0.563 Sum_probs=37.4
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
++.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+. +.|+.|++++|+++ .+|..+
T Consensus 142 L~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~ 205 (394)
T COG4886 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEI 205 (394)
T ss_pred cccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhh
Confidence 555666666665 55555666666666666666666 55555534 56666666666665 555543
No 39
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.19 E-value=0.0021 Score=37.37 Aligned_cols=22 Identities=50% Similarity=0.667 Sum_probs=16.1
Q ss_pred CccEEEccCCCCCccCccccCCC
Q 010819 472 SLVRLDLSDNQFTGSIPDSLTSS 494 (500)
Q Consensus 472 ~L~~L~Ls~N~l~G~iP~~l~~l 494 (500)
+|++|||++|+|+ .||+++++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4778888888888 788776654
No 40
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.13 E-value=0.0015 Score=65.72 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=64.5
Q ss_pred ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcc-cc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.+++|+.|+|++|++++.-+.+|..+.+|+.|.|..|++. .+-... .. ..|+.|+|.+|+++-.-|.++..+.+|..
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~ 350 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLST 350 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeee
Confidence 3467999999999999888999999999999999999997 444433 33 88999999999999777878877777654
Q ss_pred C
Q 010819 500 V 500 (500)
Q Consensus 500 L 500 (500)
|
T Consensus 351 l 351 (498)
T KOG4237|consen 351 L 351 (498)
T ss_pred e
Confidence 3
No 41
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.06 E-value=0.0018 Score=64.87 Aligned_cols=61 Identities=28% Similarity=0.449 Sum_probs=44.8
Q ss_pred eEEEEEeCCCCCCcc----CCcccccCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEccCCCCCc
Q 010819 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
.++.|++++|.+++. ++..+..+++|+.|+|++|.+++. ++..+.. ++|+.|++++|++++
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 478888888888742 444566667889999998888743 3334444 779999999988875
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.93 E-value=0.00076 Score=58.40 Aligned_cols=71 Identities=25% Similarity=0.447 Sum_probs=59.4
Q ss_pred eeEEEEEeCCCCCCccCCccccc-CCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISL-LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKL 497 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~-L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L 497 (500)
..++.++|++|.|. .+|+.|.. .+.++.|+|++|.++ .+|.+++. +.|+.|+++.|.|. ..|.-+..|.+|
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 35788999999998 67777665 458999999999999 89999988 99999999999998 667766655554
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.53 E-value=0.003 Score=63.16 Aligned_cols=76 Identities=22% Similarity=0.416 Sum_probs=55.9
Q ss_pred eEEEEEeCCCCCCc----cCCcccccC-CCCCeEEcccCCCCccCCC----cccc-CCccEEEccCCCCCcc----Cccc
Q 010819 425 VISQIDLGSQGLKG----YISDKISLL-SNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g----~ip~~~~~L-~~L~~L~Ls~N~l~G~iP~----~l~~-~~L~~L~Ls~N~l~G~----iP~~ 490 (500)
.+++|++++|.+++ .+...+..+ .+|+.|+|++|.+++.... .+.. ++|+.|+|++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 48999999999883 345566777 8999999999999964333 3333 6899999999999853 4455
Q ss_pred cCCCCCCccC
Q 010819 491 LTSSSKLQLV 500 (500)
Q Consensus 491 l~~l~~L~~L 500 (500)
+..+++|++|
T Consensus 189 l~~~~~L~~L 198 (319)
T cd00116 189 LKANCNLEVL 198 (319)
T ss_pred HHhCCCCCEE
Confidence 5655566643
No 44
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=95.40 E-value=0.013 Score=56.39 Aligned_cols=138 Identities=19% Similarity=0.237 Sum_probs=82.6
Q ss_pred hhhcccCCCCccEEEecCCCCCCcCCCCceEeecCC-c--ee--cCCc-ccccCCCCCCCCcCceeeeeCCCCCCCceeE
Q 010819 20 LSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDR-Y--YT--SGAT-SIVSEPLHFRFPHEKTLRYFPPSSGKKNCYI 93 (500)
Q Consensus 20 ~~~~~~~~~~~~~~i~CG~~~~~~d~~~~~w~~Dd~-~--~~--~g~~-~~~~~~~~~~~~~y~t~R~f~~~~g~~~~Y~ 93 (500)
.+.+|+-+..--+-++||++. .+|..|+.|-.|-. . .. -|.. ...-....-....|+|+|+-.. .|.|.
T Consensus 50 ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgyd 124 (355)
T KOG3593|consen 50 GAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGYD 124 (355)
T ss_pred cCccccCchhhhheeccCChh-hhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhccc
Confidence 344555555444689999974 47889999998541 1 00 1111 0000011123468999999754 37899
Q ss_pred eecCCCccEEEEEEe--eccCCCCCCCCCceEEEEC-CEEEEecCCCCccccCCCceEEEEEEE-eeCCceEEEEe
Q 010819 94 IPNLPPGRYYIRTFT--VYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFAF-VKDGELDLCFY 165 (500)
Q Consensus 94 ~~v~~~~~ylvRl~F--~y~~yd~~~~~~~F~v~~~-~~~~l~~~~~~~~~~~~~~~~~e~i~~-~~~~~l~v~f~ 165 (500)
.|++..|.|-+=+.| .| |+.. +.-.|||.+| ...+.+.-+.+...+......-|+|.. ...+.|++|-.
T Consensus 125 ~pik~dgdyalvlkfaevy--F~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge 197 (355)
T KOG3593|consen 125 VPIKEDGDYALVLKFAEVY--FKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE 197 (355)
T ss_pred ccccCCCceehhhhHHHHH--HHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence 999888999888999 34 3432 2568999999 888777776655543222233344332 23445555544
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=94.96 E-value=0.034 Score=38.16 Aligned_cols=36 Identities=33% Similarity=0.633 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHhcCC-CC--CCCCCCC---CCCCCCCCCCceeeec
Q 010819 376 PEQVIAMRALKESLRV-PD--RMGWNGD---PCAPTNWDAWEGITCH 416 (500)
Q Consensus 376 p~~~~~l~~lk~~l~~-~~--~~~w~~~---pc~~~~~~~w~gv~c~ 416 (500)
+.|..+|+++|..+.. +. ..+|+.. .| |+|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~-----C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP-----CSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C-----CCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCC-----eeeccEEeC
Confidence 5688999999998874 31 3589642 22 489999995
No 46
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.79 E-value=0.009 Score=68.08 Aligned_cols=74 Identities=34% Similarity=0.372 Sum_probs=63.6
Q ss_pred eEEEEEeCCCC--CCccCCc-ccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQG--LKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~--l~g~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.+++|-+..|. +. .++. .|..|+.|+.|||++|.=-+.+|+.++. -+|++|+|++..++ .+|..+++|.+|.+|
T Consensus 546 ~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred ccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 47778888876 44 4544 4788999999999998888899999999 99999999999999 899999999988775
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.54 E-value=0.0034 Score=67.76 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=52.9
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|+|++|++... - .+..|++|++|||+.|.|. .+|. ++. -.|+.|.|.+|.++ ++- .+.+|.+|+.|
T Consensus 187 ~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~gc~L~~L~lrnN~l~-tL~-gie~LksL~~L 259 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQ-LSMVGCKLQLLNLRNNALT-TLR-GIENLKSLYGL 259 (1096)
T ss_pred HHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccc-cchhhhhheeeeecccHHH-hhh-hHHhhhhhhcc
Confidence 3578999999999843 3 7889999999999999998 7775 344 45999999999887 322 34555555543
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.14 E-value=0.044 Score=50.73 Aligned_cols=56 Identities=27% Similarity=0.386 Sum_probs=36.8
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFT 484 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~ 484 (500)
...+||+.|.+. --..|..+..|++|.|++|.++ .|-+.+.. ++|+.|.|++|.+.
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh
Confidence 445777777764 1234556677777777777777 55555555 66777777777765
No 49
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=94.08 E-value=0.015 Score=56.82 Aligned_cols=73 Identities=29% Similarity=0.380 Sum_probs=47.7
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCC-------------------C---cccc-CCccEEEcc
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-------------------S---GLGQ-QSLVRLDLS 479 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP-------------------~---~l~~-~~L~~L~Ls 479 (500)
.+.++.|++|.|++. .+- ++..|.+|+.||||+|.|+ .+- + .++. -+|+.||++
T Consensus 306 ~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~ 382 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLS 382 (490)
T ss_pred ccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheecccc
Confidence 356888899998886 333 3777888888999988776 221 1 1222 457788888
Q ss_pred CCCCCccCc--cccCCCCCCcc
Q 010819 480 DNQFTGSIP--DSLTSSSKLQL 499 (500)
Q Consensus 480 ~N~l~G~iP--~~l~~l~~L~~ 499 (500)
+|++. .+- ..+|+|+-|++
T Consensus 383 ~N~Ie-~ldeV~~IG~LPCLE~ 403 (490)
T KOG1259|consen 383 SNQIE-ELDEVNHIGNLPCLET 403 (490)
T ss_pred ccchh-hHHHhcccccccHHHH
Confidence 88775 222 24677776654
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.80 E-value=0.02 Score=33.23 Aligned_cols=20 Identities=45% Similarity=0.672 Sum_probs=14.5
Q ss_pred CCCeEEcccCCCCccCCCccc
Q 010819 449 NLVNLNLSTNSLGGTLPSGLG 469 (500)
Q Consensus 449 ~L~~L~Ls~N~l~G~iP~~l~ 469 (500)
+|++|||++|+++ .||+.++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp TESEEEETSSEES-EEGTTTT
T ss_pred CccEEECCCCcCE-eCChhhc
Confidence 4677888888887 7777653
No 51
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.21 E-value=0.085 Score=28.52 Aligned_cols=13 Identities=54% Similarity=0.759 Sum_probs=5.4
Q ss_pred CccEEEccCCCCC
Q 010819 472 SLVRLDLSDNQFT 484 (500)
Q Consensus 472 ~L~~L~Ls~N~l~ 484 (500)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
No 52
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=91.67 E-value=0.15 Score=49.23 Aligned_cols=65 Identities=31% Similarity=0.551 Sum_probs=52.1
Q ss_pred hHHHHHHHhccCCceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEEC-Ce-eccceeeeccCC
Q 010819 261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVG 327 (500)
Q Consensus 261 P~~Vy~TA~~~~~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~ln-g~-~l~~~di~~~~g 327 (500)
-...|||+|.....+.|..+.+..++|.+.|-|||..- ...+..+|+|-+| +- .+..+|++...|
T Consensus 107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevyF--~~~q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVYF--KTCQHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred hhhhhhhcccchhhhcccccccCCCceehhhhHHHHHH--HhhhhhheeeeeccceeEEeccchhhhcC
Confidence 45689999986555678888888899999999999763 5667899999999 54 577788876665
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.59 E-value=0.12 Score=54.28 Aligned_cols=57 Identities=33% Similarity=0.426 Sum_probs=35.6
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
.++.|++..|++. .|...+..+.+|++|+|++|.++. +. .+.. +.|+.|++++|.++
T Consensus 96 ~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 96 SLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred ceeeeeccccchh-hcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcch
Confidence 4666777777776 333336667777777777777763 22 2233 55777777777766
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=0.077 Score=51.94 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=51.1
Q ss_pred CCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcc-cc-CCccEEEccCCCC
Q 010819 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQF 483 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~-~~L~~L~Ls~N~l 483 (500)
..|+-+.|.-. .+++++.|+|+.|.|+..|-..-..+.+|+.|-|.+-.|.-.--.++ .. +.++.|++|.|++
T Consensus 84 SdWseI~~ile---~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 84 SDWSEIGAILE---QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ccHHHHHHHHh---cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 46888887532 45779999999999986554433567788888888777764433333 33 7788888888844
No 55
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.89 E-value=0.012 Score=55.42 Aligned_cols=73 Identities=26% Similarity=0.360 Sum_probs=58.4
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.+++.||++.|++. .+...++.|+.|..|+++.|++. .+|...++ ..+..+++..|+++ ..|.+.+++++++.
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 35778888888876 56777888888888888888887 77888777 77888888888887 77888888887764
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.82 E-value=0.14 Score=27.62 Aligned_cols=17 Identities=53% Similarity=0.769 Sum_probs=9.5
Q ss_pred CCCCeEEcccCCCCccCC
Q 010819 448 SNLVNLNLSTNSLGGTLP 465 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP 465 (500)
++|+.|+|++|+|+ .+|
T Consensus 1 ~~L~~L~l~~n~L~-~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT-SLP 17 (17)
T ss_dssp TT-SEEEETSS--S-SE-
T ss_pred CccCEEECCCCCCC-CCc
Confidence 36788888888876 444
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.94 E-value=0.23 Score=47.68 Aligned_cols=57 Identities=26% Similarity=0.277 Sum_probs=29.1
Q ss_pred eEEEEEeCCC--CCCccCCcccccCCCCCeEEcccCCCCccCCCcccc----CCccEEEccCCCC
Q 010819 425 VISQIDLGSQ--GLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQF 483 (500)
Q Consensus 425 ~l~~L~Ls~n--~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~----~~L~~L~Ls~N~l 483 (500)
.|+.|.++.| +..+.++.-..++++|++|+|+.|++. +++.+.. .+|..||+.++.-
T Consensus 66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCc
Confidence 3555666666 444444444455566666666666554 1333222 4455555555543
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=88.41 E-value=0.039 Score=59.90 Aligned_cols=60 Identities=28% Similarity=0.446 Sum_probs=49.6
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
|...+.+.|.|. .+-.++.-|.+|+.|||++|+++ .+- .+-. +.|+.|||+.|+|. .+|.
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~ 226 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQ 226 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccc
Confidence 556777788887 67788999999999999999998 333 5555 89999999999998 6774
No 59
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.34 E-value=0.42 Score=28.64 Aligned_cols=14 Identities=50% Similarity=0.676 Sum_probs=7.3
Q ss_pred CCCCeEEcccCCCC
Q 010819 448 SNLVNLNLSTNSLG 461 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (500)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 60
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.34 E-value=0.42 Score=28.64 Aligned_cols=14 Identities=50% Similarity=0.676 Sum_probs=7.3
Q ss_pred CCCCeEEcccCCCC
Q 010819 448 SNLVNLNLSTNSLG 461 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (500)
++|+.|+|++|++.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 44555555555554
No 61
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=87.27 E-value=0.27 Score=50.57 Aligned_cols=61 Identities=25% Similarity=0.354 Sum_probs=47.2
Q ss_pred eeeEEEEEeCCCCCCccCC--cccccCCCCCeEEcccCCCCcc-CCCc-----ccc-CCccEEEccCCCCC
Q 010819 423 AVVISQIDLGSQGLKGYIS--DKISLLSNLVNLNLSTNSLGGT-LPSG-----LGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip--~~~~~L~~L~~L~Ls~N~l~G~-iP~~-----l~~-~~L~~L~Ls~N~l~ 484 (500)
+..|++|||++|++- ..+ ...+.|+.|..|+++.+.++.. +|+. ... ++|++|+++.|++.
T Consensus 245 ~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 346889999999986 444 5688899999999999988742 3443 223 88999999999985
No 62
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=0.094 Score=53.83 Aligned_cols=60 Identities=22% Similarity=0.287 Sum_probs=44.0
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC--cccc-CCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~--~l~~-~~L~~L~Ls~N~l~ 484 (500)
+.+..|+|..|...+.-..+...+..|+.|||++|++- ..+. -.+. +.|..|+++.+.+.
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcc
Confidence 34788999999644444555667889999999999987 5553 3444 78888888888765
No 63
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.83 E-value=0.22 Score=52.26 Aligned_cols=58 Identities=31% Similarity=0.312 Sum_probs=37.2
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~ 484 (500)
..++.|+|++|.++... .+..|+.|+.|++++|.++ .+...-..++|+.+++++|.+.
T Consensus 118 ~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLIS-DISGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred hcchheecccccccccc--chhhccchhhheeccCcch-hccCCccchhhhcccCCcchhh
Confidence 34777777777776332 2556666777777777776 3433222267777777777776
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=83.99 E-value=0.64 Score=44.76 Aligned_cols=41 Identities=32% Similarity=0.387 Sum_probs=27.1
Q ss_pred cccCCCCCeEEcccC--CCCccCCCcccc-CCccEEEccCCCCC
Q 010819 444 ISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 444 ~~~L~~L~~L~Ls~N--~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
+-.|++|+.|.+|.| ..++.++--.-. ++|++|+|++|++.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 445667777777777 555555544434 77777777777775
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.13 E-value=0.85 Score=27.28 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=17.0
Q ss_pred CCccEEEccCCCCCccCcccc
Q 010819 471 QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 471 ~~L~~L~Ls~N~l~G~iP~~l 491 (500)
++|+.|+|++|+++ .||+..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 47999999999999 888754
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.13 E-value=0.85 Score=27.28 Aligned_cols=20 Identities=45% Similarity=0.689 Sum_probs=17.0
Q ss_pred CCccEEEccCCCCCccCcccc
Q 010819 471 QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 471 ~~L~~L~Ls~N~l~G~iP~~l 491 (500)
++|+.|+|++|+++ .||+..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 47999999999999 888754
No 67
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=80.96 E-value=0.97 Score=27.36 Aligned_cols=17 Identities=53% Similarity=0.855 Sum_probs=13.1
Q ss_pred CccEEEccCCCCCccCcc
Q 010819 472 SLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 472 ~L~~L~Ls~N~l~G~iP~ 489 (500)
+|+.|++++|+|+ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5778888888887 6775
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=77.29 E-value=2.2 Score=39.74 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=51.2
Q ss_pred eeEEEEEeCCCCCCccCCccccc-CCCCCeEEcccCCCCccCCC--cccc-CCccEEEccCCCCCccCcc----ccCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISL-LSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPD----SLTSSS 495 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~-L~~L~~L~Ls~N~l~G~iP~--~l~~-~~L~~L~Ls~N~l~G~iP~----~l~~l~ 495 (500)
.+|..|.|++|.++ .|.+.+.. +..|+.|.|.+|++. .+-+ -+.. ++|++|.+-+|..+- -+. -+..++
T Consensus 64 ~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~-k~~YR~yvl~klp 140 (233)
T KOG1644|consen 64 PRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH-KKNYRLYVLYKLP 140 (233)
T ss_pred cccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc-ccCceeEEEEecC
Confidence 45888999999998 66666654 556999999999987 3322 2344 889999999987762 121 245566
Q ss_pred CCccC
Q 010819 496 KLQLV 500 (500)
Q Consensus 496 ~L~~L 500 (500)
+|++|
T Consensus 141 ~l~~L 145 (233)
T KOG1644|consen 141 SLRTL 145 (233)
T ss_pred cceEe
Confidence 66553
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.32 E-value=1.6 Score=42.99 Aligned_cols=61 Identities=26% Similarity=0.292 Sum_probs=41.3
Q ss_pred eEEEEEeCCCCCCcc--CCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 425 VISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~--ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
++..+||.+|.++.. |..-+.+|++|+.|+|+.|.|+..|-..-.. .+|++|-|.+..|..
T Consensus 72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w 135 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSW 135 (418)
T ss_pred hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCCh
Confidence 366778888877642 3334567788888888888887665544344 778888777766654
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=74.27 E-value=3 Score=41.93 Aligned_cols=39 Identities=18% Similarity=0.115 Sum_probs=21.9
Q ss_pred eeeEeecCCCcEEEEecCcchh--hhhhcccccccccCCCC
Q 010819 335 HYVAKNLSSTELTVKLVPVVGA--ALISGLENYALVPNDLS 373 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~--piLnalEi~~l~~~~~~ 373 (500)
+++.++|++|.+.-..++..+. .-...+|-+.++++..+
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 5677888888665333333332 11345666777766544
No 71
>PRK15386 type III secretion protein GogB; Provisional
Probab=74.19 E-value=3.7 Score=42.76 Aligned_cols=62 Identities=21% Similarity=0.376 Sum_probs=40.8
Q ss_pred eeEEEEEeCC-CCCCccCCcccccCCCCCeEEcccC-CCCccCCCccccCCccEEEccCCCC--CccCccccCCC
Q 010819 424 VVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQQSLVRLDLSDNQF--TGSIPDSLTSS 494 (500)
Q Consensus 424 ~~l~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N-~l~G~iP~~l~~~~L~~L~Ls~N~l--~G~iP~~l~~l 494 (500)
..|+.|.+++ +.| ..+|..+. .+|+.|++++| ++. .+|+ .|+.|+++.|.+ -+.+|.+|..|
T Consensus 72 ~sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~-----sLe~L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 72 NELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEIS-GLPE-----SVRSLEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred CCCcEEEccCCCCc-ccCCchhh--hhhhheEccCccccc-cccc-----ccceEEeCCCCCcccccCcchHhhe
Confidence 3488888887 444 35665442 57899999988 554 5665 467777777654 34677766555
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.88 E-value=0.44 Score=46.43 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=55.1
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC--cccc-CCccEEEccCCCCCccCccc-----cCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDS-----LTSSS 495 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~--~l~~-~~L~~L~Ls~N~l~G~iP~~-----l~~l~ 495 (500)
+.|+.|.||-|+++. +. .+..+++|+.|+|..|.+. .+-+ .+.+ ++|+.|-|..|.-.|.-+.. |.-|+
T Consensus 41 p~lEVLsLSvNkIss-L~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISS-LA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeecccccc-ch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 458999999999983 32 3778899999999999887 3432 2445 89999999999999877643 34455
Q ss_pred CCccC
Q 010819 496 KLQLV 500 (500)
Q Consensus 496 ~L~~L 500 (500)
+|+.|
T Consensus 118 nLkKL 122 (388)
T KOG2123|consen 118 NLKKL 122 (388)
T ss_pred cchhc
Confidence 55543
No 73
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.05 E-value=0.59 Score=27.42 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=5.7
Q ss_pred CCCCeEEcccCCCC
Q 010819 448 SNLVNLNLSTNSLG 461 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (500)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34445555555443
No 74
>PRK15386 type III secretion protein GogB; Provisional
Probab=68.68 E-value=4.5 Score=42.15 Aligned_cols=45 Identities=9% Similarity=0.261 Sum_probs=28.7
Q ss_pred eeEEEEEeCCC-CCCccCCcccccCCCCCeEEcccCCCC--ccCCCccccCCccEEEccC
Q 010819 424 VVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSLG--GTLPSGLGQQSLVRLDLSD 480 (500)
Q Consensus 424 ~~l~~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~N~l~--G~iP~~l~~~~L~~L~Ls~ 480 (500)
..|+.|++++| .+. .+|+ +|+.|+++.|.+. +.+|+ +|+.|.+.+
T Consensus 94 ~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~~~L~~LPs-----sLk~L~I~~ 141 (426)
T PRK15386 94 EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSATDSIKNVPN-----GLTSLSINS 141 (426)
T ss_pred hhhhheEccCccccc-cccc------ccceEEeCCCCCcccccCcc-----hHhheeccc
Confidence 45888999988 554 5664 3666777776653 24444 467777754
No 75
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=61.92 E-value=3 Score=46.62 Aligned_cols=59 Identities=20% Similarity=0.231 Sum_probs=38.6
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCc-cCCCcccc-CCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G-~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
+.|..||+|+.+++ .+ ..+++|++|+.|-+.+=.+.- .-=..+.. ++|+.||+|.....
T Consensus 173 pNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 173 PNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred CccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 45778888887776 23 567788888877776655541 11113445 88888888876554
No 76
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=61.86 E-value=2 Score=47.98 Aligned_cols=76 Identities=18% Similarity=0.294 Sum_probs=52.4
Q ss_pred eeeEEEEEeCCCCCCc-cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc-cCccccCCCCCCcc
Q 010819 423 AVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQL 499 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~ 499 (500)
.+.|++|.+++-.+.. .+..-..++++|..||+|+-+++ .+ ..+++ ++|+.|.+-+=.+.- ..-..+.+|++|++
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 3568888888877642 33444567888999999998887 33 55666 888888876655541 12235778888877
Q ss_pred C
Q 010819 500 V 500 (500)
Q Consensus 500 L 500 (500)
|
T Consensus 225 L 225 (699)
T KOG3665|consen 225 L 225 (699)
T ss_pred e
Confidence 5
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=61.43 E-value=6.6 Score=23.78 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=7.9
Q ss_pred CCCCeEEcccCCCC
Q 010819 448 SNLVNLNLSTNSLG 461 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (500)
++|+.|+|+.|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45555666665554
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.75 E-value=7.5 Score=23.76 Aligned_cols=14 Identities=50% Similarity=0.660 Sum_probs=9.8
Q ss_pred CCccEEEccCCCCC
Q 010819 471 QSLVRLDLSDNQFT 484 (500)
Q Consensus 471 ~~L~~L~Ls~N~l~ 484 (500)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777774
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.42 E-value=2.2 Score=39.77 Aligned_cols=76 Identities=22% Similarity=0.162 Sum_probs=48.2
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCc-cCCCcccc--CCccEEEccCC-CCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ--QSLVRLDLSDN-QFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G-~iP~~l~~--~~L~~L~Ls~N-~l~G~iP~~l~~l~~L~~ 499 (500)
..++.+|-++..+...==+.+.+|+.|+.|.+.++.--+ .--+.++. ++|+.|+|++| +++-.=-..|.++++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 358889999988875555567777777887777664221 11123344 78999999976 455322234566666654
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=50.78 E-value=0.72 Score=43.83 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=52.2
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
.++..|+++.|.+. .+|..++.+..++++++..|+++ ..|-+.+. +.++.+++-.|.|.
T Consensus 65 t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 65 TRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 45678899998887 88999999999999999999998 88999888 99999999988876
No 81
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=50.61 E-value=3.5e+02 Score=29.46 Aligned_cols=121 Identities=16% Similarity=0.218 Sum_probs=62.4
Q ss_pred ceeeeeceeecCCCCCCCCchHHHHHHHhcc-----CCceEEEEecCCCCcEEEEEEEEeeccCCCCC-----cceEEEE
Q 010819 241 IKSVTTRERITNTNQPPNYYPMKLYQTAIVS-----SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKA-----GQRVFDI 310 (500)
Q Consensus 241 ~~~~st~~~i~~~~~~~~~~P~~Vy~TA~~~-----~~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~-----~~R~F~I 310 (500)
|.-.+.+.+++.+...|-..-+++|+....- .+.|.+.|-...+.+|--.+.--|+..-+... -..+-.|
T Consensus 29 w~~~~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~v 108 (867)
T KOG2230|consen 29 WEFSSSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIATV 108 (867)
T ss_pred eEEecCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEEE
Confidence 4444455566665555555566677776554 23466666543445554333334443321110 1345588
Q ss_pred EECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccc
Q 010819 311 LVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366 (500)
Q Consensus 311 ~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~ 366 (500)
++||+.+-..+ ..+.++-.+.+......|.++..+.....-+-..+-|..+
T Consensus 109 ~~n~~~v~~s~-----n~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k 159 (867)
T KOG2230|consen 109 YVNGQKVLHSR-----NQFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKK 159 (867)
T ss_pred EEccEEEeecc-----ccceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhc
Confidence 99998542211 1244555556666666688887766554322233444433
No 82
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.51 E-value=2.6 Score=41.26 Aligned_cols=70 Identities=26% Similarity=0.317 Sum_probs=47.3
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc--ccCCCCCCccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV 500 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L 500 (500)
+..|++-+++|+. |. -...|..|+.|.||-|+++ ++- .+.. ++|+.|.|..|.+. .+-+ -|.+|++|+.|
T Consensus 21 vkKLNcwg~~L~D-Is-ic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 21 VKKLNCWGCGLDD-IS-ICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred hhhhcccCCCccH-HH-HHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 4445555666552 11 1347888999999999998 332 2445 99999999999887 4433 35677777654
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=41.39 E-value=17 Score=35.73 Aligned_cols=60 Identities=22% Similarity=0.402 Sum_probs=44.9
Q ss_pred eeEEEEEeCCCCCCccCCccc----ccCCCCCeEEcccCCCCccCC-Cccc------------c--CCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKI----SLLSNLVNLNLSTNSLGGTLP-SGLG------------Q--QSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~----~~L~~L~~L~Ls~N~l~G~iP-~~l~------------~--~~L~~L~Ls~N~l~ 484 (500)
++++.++||.|.+.-..|+.+ +.-+.|.+|.|++|.+- ++- ..++ . +.|++.....|.|.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 568899999999987777764 56678999999999885 332 2222 1 56889999888875
No 84
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=40.49 E-value=13 Score=37.56 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=37.6
Q ss_pred eEEEEEeCCCCCCccCCcc----cccCCCCCeEEcccCCCC---ccC----------CCcccc-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLG---GTL----------PSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~----~~~L~~L~~L~Ls~N~l~---G~i----------P~~l~~-~~L~~L~Ls~N~l~ 484 (500)
+++.|+||.|.|.-.-++. +..++.|++|.|.+|.+. |.. -.-++. +.|+++....|.+.
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 4778888888876443333 456677888888888774 111 112233 66777777777764
No 85
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=39.66 E-value=32 Score=33.84 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=40.3
Q ss_pred eeEEEEEeCCCCCCc----cCCcc---------cccCCCCCeEEcccCCCCccCCCcccc-----CCccEEEccCCCCC
Q 010819 424 VVISQIDLGSQGLKG----YISDK---------ISLLSNLVNLNLSTNSLGGTLPSGLGQ-----QSLVRLDLSDNQFT 484 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g----~ip~~---------~~~L~~L~~L~Ls~N~l~G~iP~~l~~-----~~L~~L~Ls~N~l~ 484 (500)
..+.+|.|++|++.- .|... ..+-+.|+......|+|-..--..+.. ..|+.+-+..|.+.
T Consensus 120 t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIr 198 (388)
T COG5238 120 TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIR 198 (388)
T ss_pred CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcC
Confidence 458899999999852 22222 234467899999999986322222222 47889999888665
No 86
>PRK06764 hypothetical protein; Provisional
Probab=34.38 E-value=36 Score=26.78 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.5
Q ss_pred CceeEeecCCCccEEEEEE
Q 010819 89 KNCYIIPNLPPGRYYIRTF 107 (500)
Q Consensus 89 ~~~Y~~~v~~~~~ylvRl~ 107 (500)
.|.|++.-.++|+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 4689999989999999973
No 87
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=29.49 E-value=19 Score=35.83 Aligned_cols=54 Identities=28% Similarity=0.289 Sum_probs=37.6
Q ss_pred eEEEEEeCCCC-CCccCCcccccCCCCCeEEcccCCCCccCCCcc---cc-CCccEEEccC
Q 010819 425 VISQIDLGSQG-LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL---GQ-QSLVRLDLSD 480 (500)
Q Consensus 425 ~l~~L~Ls~n~-l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l---~~-~~L~~L~Ls~ 480 (500)
.+.+|||+.+. |+..+-.+|.+++.|++|.|+.+-. .+|..+ .. +.|.+||..+
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 47788887754 5555666788888888888887754 455543 33 7888888754
No 88
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=28.71 E-value=4.8 Score=39.85 Aligned_cols=56 Identities=27% Similarity=0.350 Sum_probs=34.9
Q ss_pred eEEEEEeCCCCCCcc-CCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccC
Q 010819 425 VISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~ 480 (500)
+++.|||++..++.. +-.-++.+.+|+.|.|.+++|...|-..++. .+|+.|||+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 366677776665421 1222445566777777777777666666666 6777777765
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=25.26 E-value=1.1e+02 Score=25.26 Aligned_cols=53 Identities=15% Similarity=0.321 Sum_probs=24.3
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDN 481 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N 481 (500)
++.+.+..+ +...-...+..+..|+.+.+.+ .+. .++.. +.. ++|+.+++..|
T Consensus 37 l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~ 91 (129)
T PF13306_consen 37 LKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN 91 (129)
T ss_dssp -SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT
T ss_pred ccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccccccccccCcc
Confidence 555566553 4433333455665666666654 333 23332 333 66777766554
No 90
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=22.97 E-value=4.4e+02 Score=21.77 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.7
Q ss_pred CCCCceeE-eecCCCccEEEEEEeeccCCCCCCCCCceEEEECC
Q 010819 86 SGKKNCYI-IPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEG 128 (500)
Q Consensus 86 ~g~~~~Y~-~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~ 128 (500)
.|...+|+ +.+...|.|-|++.+.-+ .+ ...++|++|+
T Consensus 30 ~G~~~~~~~Vd~~~~g~y~~~~~~a~~--~~---~~~~~l~id~ 68 (125)
T PF03422_consen 30 NGDWIEYNNVDVPEAGTYTLTIRYANG--GG---GGTIELRIDG 68 (125)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEEEEES--SS---SEEEEEEETT
T ss_pred CCCEEEEEEEeeCCCceEEEEEEEECC--CC---CcEEEEEECC
Confidence 34456888 888889999998665432 22 2689999998
Done!