Query 010819
Match_columns 500
No_of_seqs 378 out of 2841
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 14:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010819.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010819hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 3.8E-25 1.3E-29 202.0 11.8 148 30-183 6-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.9 2.5E-22 8.5E-27 183.3 7.3 153 199-367 5-171 (174)
3 1ogq_A PGIP-2, polygalacturona 99.4 4.5E-13 1.5E-17 133.3 10.2 122 373-500 2-130 (313)
4 3rgz_A Protein brassinosteroid 99.4 3.3E-13 1.1E-17 150.6 6.9 161 335-500 515-709 (768)
5 4ecn_A Leucine-rich repeat pro 99.3 5E-12 1.7E-16 142.1 8.7 118 374-500 266-496 (876)
6 4eco_A Uncharacterized protein 99.2 1.3E-11 4.5E-16 134.7 8.7 115 375-500 28-254 (636)
7 4fcg_A Uncharacterized protein 99.2 3.4E-12 1.2E-16 127.9 1.0 77 423-500 205-282 (328)
8 4fcg_A Uncharacterized protein 99.2 4.4E-12 1.5E-16 127.1 1.4 148 335-500 151-306 (328)
9 3rgz_A Protein brassinosteroid 99.1 2.5E-11 8.5E-16 135.4 5.1 153 335-495 395-562 (768)
10 1ogq_A PGIP-2, polygalacturona 99.1 1.6E-11 5.6E-16 122.0 1.5 146 334-500 101-249 (313)
11 3g39_A Variable lymphocyte rec 99.0 7E-10 2.4E-14 100.1 8.1 93 408-500 9-107 (170)
12 3m19_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 108.4 6.1 76 425-500 108-184 (251)
13 2v70_A SLIT-2, SLIT homolog 2 99.0 2E-10 7E-15 108.1 4.1 140 309-499 15-157 (220)
14 4eco_A Uncharacterized protein 99.0 3.6E-10 1.2E-14 123.3 6.5 81 420-500 202-310 (636)
15 1ozn_A Reticulon 4 receptor; N 99.0 4.5E-10 1.5E-14 109.7 6.2 77 424-500 153-230 (285)
16 1w8a_A SLIT protein; signaling 98.9 1.4E-09 4.7E-14 100.1 8.0 77 424-500 54-131 (192)
17 4ecn_A Leucine-rich repeat pro 98.9 1.1E-10 3.9E-15 131.1 0.3 78 422-500 489-578 (876)
18 3rfs_A Internalin B, repeat mo 98.9 7.2E-10 2.4E-14 107.7 5.8 63 426-488 159-222 (272)
19 2wfh_A SLIT homolog 2 protein 98.9 2.2E-09 7.5E-14 98.9 8.6 92 408-500 10-107 (193)
20 2r9u_A Variable lymphocyte rec 98.9 3.2E-09 1.1E-13 96.2 9.0 93 408-500 12-110 (174)
21 1p9a_G Platelet glycoprotein I 98.9 1.1E-09 3.9E-14 107.5 6.2 143 335-500 56-200 (290)
22 3e6j_A Variable lymphocyte rec 98.9 2.4E-09 8E-14 101.4 8.0 93 408-500 19-117 (229)
23 1p9a_G Platelet glycoprotein I 98.9 1.1E-09 3.8E-14 107.5 5.4 163 308-500 13-177 (290)
24 1w8a_A SLIT protein; signaling 98.9 1.9E-09 6.5E-14 99.1 6.1 66 423-488 77-143 (192)
25 3e6j_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 100.4 7.9 41 335-377 41-81 (229)
26 2o6r_A Variable lymphocyte rec 98.8 4.8E-09 1.7E-13 94.8 7.9 92 408-499 7-104 (177)
27 1ozn_A Reticulon 4 receptor; N 98.8 1.5E-09 5.1E-14 105.9 4.2 135 335-488 106-242 (285)
28 2z66_A Variable lymphocyte rec 98.8 5.7E-10 2E-14 110.0 1.0 147 334-500 78-228 (306)
29 2o6q_A Variable lymphocyte rec 98.8 2.5E-09 8.6E-14 103.6 5.4 76 424-499 133-209 (270)
30 2v9t_B SLIT homolog 2 protein 98.8 8.8E-09 3E-13 96.8 8.8 74 426-499 82-156 (220)
31 2ifg_A High affinity nerve gro 98.8 6.3E-09 2.2E-13 104.4 8.2 91 408-500 8-108 (347)
32 2wfh_A SLIT homolog 2 protein 98.8 2.6E-09 8.9E-14 98.4 4.9 60 426-485 80-140 (193)
33 2o6s_A Variable lymphocyte rec 98.8 8.1E-09 2.8E-13 95.8 8.2 92 408-499 7-104 (208)
34 1dce_A Protein (RAB geranylger 98.8 1E-09 3.5E-14 118.0 2.1 75 423-500 462-538 (567)
35 3zyi_A Leucine-rich repeat-con 98.8 3.2E-09 1.1E-13 110.8 5.6 145 334-500 147-295 (452)
36 2z66_A Variable lymphocyte rec 98.8 2E-09 6.9E-14 106.0 3.3 148 334-500 101-253 (306)
37 2v9t_B SLIT homolog 2 protein 98.8 1E-08 3.4E-13 96.4 7.8 73 426-499 58-132 (220)
38 3zyj_A Leucine-rich repeat-con 98.8 4E-09 1.4E-13 109.7 5.4 145 334-500 136-284 (440)
39 3m19_A Variable lymphocyte rec 98.8 3.3E-09 1.1E-13 101.6 4.5 76 425-500 84-160 (251)
40 2je0_A Acidic leucine-rich nuc 98.8 2.2E-09 7.5E-14 94.1 2.4 122 335-500 18-145 (149)
41 3rfs_A Internalin B, repeat mo 98.7 6.6E-09 2.3E-13 100.8 5.6 164 309-500 45-210 (272)
42 2o6q_A Variable lymphocyte rec 98.7 4.4E-09 1.5E-13 101.9 4.2 146 335-500 38-186 (270)
43 2v70_A SLIT-2, SLIT homolog 2 98.7 1.5E-08 5.3E-13 95.1 7.6 76 425-500 58-134 (220)
44 3vq2_A TLR4, TOLL-like recepto 98.7 4.1E-09 1.4E-13 113.8 4.0 75 424-499 473-549 (606)
45 3t6q_A CD180 antigen; protein- 98.7 4.8E-09 1.6E-13 113.3 4.3 76 424-499 376-453 (606)
46 2o6s_A Variable lymphocyte rec 98.7 2.1E-08 7.3E-13 92.9 8.1 134 335-488 29-165 (208)
47 2ell_A Acidic leucine-rich nuc 98.7 1.3E-08 4.3E-13 91.1 6.2 122 335-500 25-152 (168)
48 3t6q_A CD180 antigen; protein- 98.7 2.8E-09 9.7E-14 115.1 2.2 75 424-499 476-551 (606)
49 3zyi_A Leucine-rich repeat-con 98.7 8.2E-09 2.8E-13 107.6 5.1 76 423-500 195-271 (452)
50 1wwl_A Monocyte differentiatio 98.7 1.3E-09 4.3E-14 108.1 -1.3 148 333-499 120-278 (312)
51 3oja_A Leucine-rich immune mol 98.7 8.9E-09 3E-13 108.7 4.9 76 423-500 143-219 (487)
52 3zyj_A Leucine-rich repeat-con 98.7 1.4E-08 4.9E-13 105.4 5.9 76 423-500 184-260 (440)
53 2id5_A Lingo-1, leucine rich r 98.7 9.8E-09 3.3E-13 107.6 4.5 41 335-377 57-97 (477)
54 2z62_A TOLL-like receptor 4, v 98.7 6.4E-09 2.2E-13 100.9 2.7 144 335-499 53-204 (276)
55 2ft3_A Biglycan; proteoglycan, 98.7 1.6E-08 5.4E-13 100.9 5.4 158 335-500 103-269 (332)
56 1dce_A Protein (RAB geranylger 98.6 9.5E-09 3.3E-13 110.4 3.7 74 425-500 487-565 (567)
57 4g8a_A TOLL-like receptor 4; l 98.6 3.5E-08 1.2E-12 106.4 7.9 75 424-498 124-200 (635)
58 2id5_A Lingo-1, leucine rich r 98.6 9.5E-09 3.3E-13 107.7 3.2 131 335-484 33-165 (477)
59 2z7x_B TOLL-like receptor 1, v 98.6 6.3E-09 2.1E-13 110.3 1.8 67 425-491 349-419 (520)
60 3vq2_A TLR4, TOLL-like recepto 98.6 4.5E-08 1.6E-12 105.6 8.5 145 335-498 33-180 (606)
61 1xku_A Decorin; proteoglycan, 98.6 1.3E-08 4.6E-13 101.3 3.8 66 425-491 217-283 (330)
62 3v47_A TOLL-like receptor 5B a 98.6 4.4E-08 1.5E-12 101.7 7.9 135 335-488 276-412 (455)
63 2z63_A TOLL-like receptor 4, v 98.6 1.1E-08 3.7E-13 109.5 3.3 77 424-500 445-523 (570)
64 2z62_A TOLL-like receptor 4, v 98.6 1.5E-08 5.1E-13 98.2 3.7 75 425-499 150-228 (276)
65 4b8c_D Glucose-repressible alc 98.6 1.1E-08 3.8E-13 113.2 3.0 66 426-492 295-362 (727)
66 1h6t_A Internalin B; cell adhe 98.6 2.1E-08 7.2E-13 98.4 4.5 70 425-500 135-205 (291)
67 1wwl_A Monocyte differentiatio 98.6 3.1E-08 1.1E-12 98.1 5.6 145 334-500 149-301 (312)
68 3v47_A TOLL-like receptor 5B a 98.6 3.7E-08 1.3E-12 102.3 6.4 90 411-500 13-108 (455)
69 4b8c_D Glucose-repressible alc 98.6 1.4E-08 4.9E-13 112.3 3.4 115 359-493 223-338 (727)
70 3oja_B Anopheles plasmodium-re 98.6 3.4E-08 1.1E-12 106.8 5.7 58 442-500 248-306 (597)
71 3oja_B Anopheles plasmodium-re 98.6 5.4E-08 1.8E-12 105.2 7.1 75 424-500 254-329 (597)
72 2z81_A CD282 antigen, TOLL-lik 98.6 3.9E-08 1.3E-12 104.7 5.8 76 425-500 27-103 (549)
73 4glp_A Monocyte differentiatio 98.6 4.4E-08 1.5E-12 96.7 5.7 72 424-499 224-298 (310)
74 3a79_B TLR6, VLRB.59, TOLL-lik 98.6 7.3E-09 2.5E-13 111.1 -0.1 73 424-500 428-502 (562)
75 2z81_A CD282 antigen, TOLL-lik 98.6 2.7E-08 9.4E-13 105.9 4.3 147 334-499 50-200 (549)
76 2je0_A Acidic leucine-rich nuc 98.6 3.4E-08 1.2E-12 86.4 4.1 76 423-500 41-118 (149)
77 3j0a_A TOLL-like receptor 5; m 98.5 1.5E-08 5.1E-13 114.1 2.1 147 333-496 47-199 (844)
78 2xot_A Amphoterin-induced prot 98.5 9.3E-08 3.2E-12 96.7 7.5 140 336-496 41-188 (361)
79 2o6r_A Variable lymphocyte rec 98.5 9.2E-08 3.1E-12 86.3 6.6 62 426-487 78-140 (177)
80 2xot_A Amphoterin-induced prot 98.5 1.1E-07 3.7E-12 96.2 7.8 100 400-499 10-116 (361)
81 3o6n_A APL1; leucine-rich repe 98.5 8.7E-08 3E-12 97.7 6.9 51 334-387 117-169 (390)
82 1ziw_A TOLL-like receptor 3; i 98.5 1.7E-08 6E-13 110.5 1.4 75 424-498 121-198 (680)
83 1xeu_A Internalin C; cellular 98.5 5.4E-08 1.9E-12 94.0 4.5 56 426-485 130-186 (263)
84 2z80_A TOLL-like receptor 2, v 98.5 4.9E-08 1.7E-12 98.2 4.4 168 308-499 55-226 (353)
85 2z63_A TOLL-like receptor 4, v 98.5 1.5E-08 5.1E-13 108.3 0.4 77 424-500 421-499 (570)
86 2z7x_B TOLL-like receptor 1, v 98.5 4.5E-08 1.6E-12 103.6 4.0 144 334-500 324-473 (520)
87 2ell_A Acidic leucine-rich nuc 98.5 5.2E-08 1.8E-12 87.1 3.6 76 422-500 47-125 (168)
88 3j0a_A TOLL-like receptor 5; m 98.5 3.9E-08 1.3E-12 110.7 3.5 142 334-493 73-226 (844)
89 1m9s_A Internalin B; cell inva 98.5 3.9E-08 1.3E-12 106.4 3.3 57 425-485 154-211 (605)
90 4g8a_A TOLL-like receptor 4; l 98.5 1.3E-07 4.4E-12 102.0 7.1 78 423-500 493-572 (635)
91 1ziw_A TOLL-like receptor 3; i 98.5 2E-07 7E-12 101.9 8.2 147 335-500 26-176 (680)
92 1h6u_A Internalin H; cell adhe 98.5 6.6E-08 2.3E-12 95.6 3.6 136 335-500 86-222 (308)
93 3oja_A Leucine-rich immune mol 98.5 2E-08 6.9E-13 105.9 -0.2 160 306-500 35-196 (487)
94 3o53_A Protein LRIM1, AGAP0063 98.4 1.3E-08 4.3E-13 101.1 -2.4 74 424-499 191-266 (317)
95 1h6u_A Internalin H; cell adhe 98.4 8.9E-08 3E-12 94.7 3.7 124 334-485 107-231 (308)
96 2xwt_C Thyrotropin receptor; s 98.4 4.4E-08 1.5E-12 92.9 0.9 65 424-490 155-223 (239)
97 4ezg_A Putative uncharacterize 98.4 1.2E-07 4.2E-12 87.1 3.7 75 423-500 111-186 (197)
98 3o53_A Protein LRIM1, AGAP0063 98.4 1.2E-07 3.9E-12 94.1 3.6 76 423-500 143-219 (317)
99 3cvr_A Invasion plasmid antige 98.4 1.3E-07 4.3E-12 101.6 4.2 64 426-494 182-253 (571)
100 2z80_A TOLL-like receptor 2, v 98.4 2.5E-07 8.4E-12 93.0 6.0 76 425-500 53-129 (353)
101 1m9s_A Internalin B; cell inva 98.4 1.3E-07 4.4E-12 102.3 4.2 138 333-500 64-202 (605)
102 3o6n_A APL1; leucine-rich repe 98.4 1.6E-07 5.5E-12 95.7 4.6 140 335-498 46-189 (390)
103 3g39_A Variable lymphocyte rec 98.4 5.4E-07 1.8E-11 80.9 7.5 72 426-500 11-83 (170)
104 1h6t_A Internalin B; cell adhe 98.4 1.6E-07 5.5E-12 92.0 4.3 71 424-500 112-183 (291)
105 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 1.3E-07 4.6E-12 101.2 3.9 63 425-489 451-515 (562)
106 2r9u_A Variable lymphocyte rec 98.4 5.7E-07 1.9E-11 81.2 7.4 71 427-500 15-86 (174)
107 1xku_A Decorin; proteoglycan, 98.4 7.7E-07 2.6E-11 88.4 8.6 83 408-491 31-119 (330)
108 1a9n_A U2A', U2A'; complex (nu 98.3 9.4E-08 3.2E-12 86.2 1.6 75 424-500 64-145 (176)
109 1o6v_A Internalin A; bacterial 98.3 1.9E-07 6.6E-12 97.6 3.5 56 426-485 333-389 (466)
110 2ifg_A High affinity nerve gro 98.3 4.8E-07 1.7E-11 90.5 6.1 71 428-500 12-85 (347)
111 2ft3_A Biglycan; proteoglycan, 98.3 7.3E-07 2.5E-11 88.7 7.1 83 408-491 33-121 (332)
112 4ezg_A Putative uncharacterize 98.3 4E-07 1.4E-11 83.6 4.4 76 424-500 88-164 (197)
113 4fmz_A Internalin; leucine ric 98.3 1.6E-07 5.5E-12 93.9 1.8 73 424-500 265-338 (347)
114 1a9n_A U2A', U2A'; complex (nu 98.3 3.4E-07 1.2E-11 82.5 3.9 72 425-500 43-118 (176)
115 1jl5_A Outer protein YOPM; leu 98.3 1.5E-07 5.1E-12 98.3 1.3 147 335-495 12-176 (454)
116 3cvr_A Invasion plasmid antige 98.3 3.4E-07 1.2E-11 98.3 3.9 141 306-493 60-200 (571)
117 4fmz_A Internalin; leucine ric 98.2 3.8E-07 1.3E-11 91.1 3.0 73 424-500 243-316 (347)
118 1ds9_A Outer arm dynein; leuci 98.2 1.4E-09 4.6E-14 100.5 -14.1 74 424-500 93-179 (198)
119 3bz5_A Internalin-J, INLJ; leu 98.2 5E-07 1.7E-11 94.4 3.4 62 426-489 235-304 (457)
120 3g06_A SSPH2 (leucine-rich rep 98.2 7.7E-07 2.6E-11 96.5 4.9 60 426-490 243-303 (622)
121 3bz5_A Internalin-J, INLJ; leu 98.2 7.6E-07 2.6E-11 93.0 4.5 132 334-500 64-196 (457)
122 4glp_A Monocyte differentiatio 98.2 1.2E-06 4.1E-11 86.3 5.1 78 423-500 116-202 (310)
123 1jl5_A Outer protein YOPM; leu 98.2 1E-06 3.4E-11 92.1 4.5 61 424-491 195-256 (454)
124 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.9E-11 84.8 3.4 74 425-500 171-256 (267)
125 4ay9_X Follicle-stimulating ho 98.1 2.7E-06 9.3E-11 85.4 5.8 93 408-500 9-109 (350)
126 1o6v_A Internalin A; bacterial 98.1 1.3E-06 4.6E-11 91.1 3.4 71 424-500 309-380 (466)
127 2xwt_C Thyrotropin receptor; s 98.1 2.2E-06 7.7E-11 80.9 4.6 73 426-498 33-108 (239)
128 1xeu_A Internalin C; cellular 98.0 2.1E-06 7.2E-11 82.7 3.6 135 335-500 42-177 (263)
129 2ast_B S-phase kinase-associat 98.0 5E-08 1.7E-12 97.0 -9.6 150 334-500 118-277 (336)
130 3g06_A SSPH2 (leucine-rich rep 98.0 1.5E-06 5.2E-11 94.2 1.3 68 425-500 222-289 (622)
131 2ca6_A RAN GTPase-activating p 97.8 2.4E-06 8.2E-11 86.8 -0.4 76 425-500 188-279 (386)
132 1ds9_A Outer arm dynein; leuci 97.8 5.5E-07 1.9E-11 82.7 -5.4 72 424-500 48-120 (198)
133 2ast_B S-phase kinase-associat 97.7 2.4E-06 8.2E-11 84.8 -2.4 76 424-499 118-199 (336)
134 2ca6_A RAN GTPase-activating p 97.6 4.8E-06 1.6E-10 84.6 -1.9 77 424-500 216-308 (386)
135 3goz_A Leucine-rich repeat-con 97.3 3.7E-05 1.3E-09 77.4 -0.4 76 425-500 52-143 (362)
136 4ay9_X Follicle-stimulating ho 97.2 0.00019 6.6E-09 71.7 4.8 62 426-489 156-219 (350)
137 3rw6_A Nuclear RNA export fact 97.1 6.4E-05 2.2E-09 72.4 -0.6 55 444-500 166-225 (267)
138 3goz_A Leucine-rich repeat-con 97.1 0.0001 3.4E-09 74.2 0.3 76 425-500 23-114 (362)
139 1z7x_W Ribonuclease inhibitor; 97.0 5.3E-05 1.8E-09 78.3 -2.1 62 425-486 342-413 (461)
140 1z7x_W Ribonuclease inhibitor; 96.9 8.7E-05 3E-09 76.7 -2.1 66 424-489 56-131 (461)
141 3un9_A NLR family member X1; l 96.4 0.00028 9.7E-09 71.4 -2.2 68 424-491 183-259 (372)
142 3ogk_B Coronatine-insensitive 96.1 0.00035 1.2E-08 74.6 -3.3 75 424-499 192-274 (592)
143 3un9_A NLR family member X1; l 95.9 0.0011 3.6E-08 67.1 -0.5 77 424-500 155-244 (372)
144 1io0_A Tropomodulin; LRR prote 95.9 0.0011 3.6E-08 60.0 -0.7 76 424-499 65-155 (185)
145 3rfe_A Platelet glycoprotein I 95.8 0.015 5.1E-07 49.3 6.2 54 428-484 12-68 (130)
146 1io0_A Tropomodulin; LRR prote 95.6 0.0012 4.1E-08 59.7 -1.4 60 425-484 94-164 (185)
147 2p1m_B Transport inhibitor res 94.9 0.0018 6.1E-08 69.0 -3.2 60 425-484 457-519 (594)
148 3ogk_B Coronatine-insensitive 94.6 0.0088 3E-07 63.6 1.4 75 424-500 220-298 (592)
149 2p1m_B Transport inhibitor res 94.5 0.0035 1.2E-07 66.7 -2.1 58 425-482 131-195 (594)
150 3e4g_A ATP synthase subunit S, 94.5 0.009 3.1E-07 53.5 0.9 77 424-500 61-144 (176)
151 3sb4_A Hypothetical leucine ri 94.0 0.049 1.7E-06 53.4 5.2 72 425-500 251-326 (329)
152 3sb4_A Hypothetical leucine ri 94.0 0.04 1.4E-06 54.1 4.5 72 425-500 227-302 (329)
153 3rfe_A Platelet glycoprotein I 93.3 0.079 2.7E-06 44.7 4.5 37 425-461 32-68 (130)
154 2ra8_A Uncharacterized protein 92.6 0.017 5.7E-07 58.0 -0.8 62 424-485 252-321 (362)
155 2w47_A Lipolytic enzyme, G-D-S 90.2 6.1 0.00021 33.4 13.2 93 87-183 39-132 (144)
156 2ra8_A Uncharacterized protein 90.1 0.028 9.5E-07 56.4 -2.2 55 446-500 250-312 (362)
157 2vzp_A Aocbm35, EXO-beta-D-glu 87.9 8.6 0.00029 31.6 12.2 89 87-179 38-127 (127)
158 1pgv_A TMD-1, tropomodulin TMD 87.5 0.11 3.6E-06 47.3 -0.1 58 424-481 70-136 (197)
159 2w3j_A Carbohydrate binding mo 85.3 13 0.00045 31.4 12.2 92 87-183 38-130 (145)
160 4fdw_A Leucine rich hypothetic 82.6 1.4 4.8E-05 44.4 5.6 36 443-479 175-211 (401)
161 2w87_A Esterase D, XYL-CBM35; 77.9 16 0.00055 30.6 9.9 91 87-181 38-130 (139)
162 1pgv_A TMD-1, tropomodulin TMD 76.6 0.57 2E-05 42.4 0.3 60 425-484 99-170 (197)
163 2wz8_A Cellulosome protein doc 75.2 16 0.00054 31.4 9.2 90 91-182 50-149 (156)
164 4fdw_A Leucine rich hypothetic 73.3 2.6 8.9E-05 42.4 4.3 70 425-499 272-349 (401)
165 2vzp_A Aocbm35, EXO-beta-D-glu 67.1 25 0.00085 28.7 8.4 40 273-317 39-78 (127)
166 2o14_A Hypothetical protein YX 64.3 50 0.0017 32.5 11.5 79 90-184 78-157 (375)
167 2w47_A Lipolytic enzyme, G-D-S 63.1 30 0.001 28.9 8.4 89 273-367 40-131 (144)
168 4h09_A Hypothetical leucine ri 59.1 12 0.00041 36.6 5.9 53 426-480 288-342 (379)
169 2w3j_A Carbohydrate binding mo 56.6 40 0.0014 28.4 7.9 41 273-318 39-79 (145)
170 2w87_A Esterase D, XYL-CBM35; 54.1 42 0.0014 28.0 7.6 40 273-317 39-78 (139)
171 4fs7_A Uncharacterized protein 50.9 13 0.00044 36.8 4.5 69 426-499 322-392 (394)
172 2wz8_A Cellulosome protein doc 49.6 1E+02 0.0035 26.1 9.5 44 273-316 47-96 (156)
173 4gt6_A Cell surface protein; l 43.4 29 0.00099 34.1 5.8 55 426-483 313-369 (394)
174 4fs7_A Uncharacterized protein 41.8 13 0.00045 36.7 2.9 69 426-499 299-370 (394)
175 4h09_A Hypothetical leucine ri 38.4 33 0.0011 33.3 5.2 71 426-500 265-338 (379)
176 3e4g_A ATP synthase subunit S, 38.4 19 0.00063 31.7 2.9 38 448-485 61-100 (176)
177 4gt6_A Cell surface protein; l 26.9 50 0.0017 32.4 4.3 52 443-498 306-360 (394)
178 2cdp_A Beta-agarase 1; carbohy 21.5 3.6E+02 0.012 22.6 10.2 39 86-129 65-103 (160)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.92 E-value=3.8e-25 Score=202.05 Aligned_cols=148 Identities=18% Similarity=0.106 Sum_probs=113.1
Q ss_pred ccEEEecCCCCCCcCCCCceEeecCCceecCCcccc------cCCCCCCCCcCceeeeeCCCCCCCceeEeecCCCccEE
Q 010819 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (500)
Q Consensus 30 ~~~~i~CG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~g~~~~Y~~~v~~~~~yl 103 (500)
..|+||||++.. +|..+|+|.+|+.|...|..... ......+..+|+|+|+|+.. .+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~~-~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~~----~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGESH-VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS----FGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSSE-EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCSC----EEEEEECCSCEEEE
T ss_pred EEEEEECCCCCc-cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCCC----eEEEEEeCCCeEEE
Confidence 358999999753 56789999998665433322110 11112345699999999863 79999998889999
Q ss_pred EEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEe-------------eCCceEEEEeecCCC
Q 010819 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (500)
Q Consensus 104 vRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~v~f~~~~~~ 170 (500)
|||||..-.+... ..++|||+++|++++++||++.+++...++++|+.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 9999976555544 47999999999999999998776655567788887663 567899999987667
Q ss_pred CceeeeeeeeecC
Q 010819 171 PPVIASLEVQQID 183 (500)
Q Consensus 171 ~pfIn~iEl~~l~ 183 (500)
.||||||||++.+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999999754
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.86 E-value=2.5e-22 Score=183.31 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=111.2
Q ss_pred EEEeeeccCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCceeeeeceeecCCCCCCCCchHHHHHHHhccCCceEEE
Q 010819 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (500)
Q Consensus 199 ~~~~R~n~G~~~~~~~~~~~~D~~dR~W~~d~~~~~~~~~~~~~~~st~~~i~~~~~~~~~~P~~Vy~TA~~~~~~lt~~ 278 (500)
++++|+||||... .|..+|.|.+|..|......+ .......+. ....+|..||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~~-------~d~~gr~w~~D~~~~~~g~~~---~~~~~~~~~----~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGESH-------VDVHGIHYRKDPLEGRVGRAS---DYGMKLPIL----RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSSE-------EETTTEEECSSCSSTTCCCCC---CCCTTSCCS----SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCCc-------cCCCCCEEcCCcCcccCCccc---ccccceEec----ccCCCCchhhhhhccCCCCeEEE
Confidence 4689999998642 267899999998764211110 001111111 11236899999999987789999
Q ss_pred EecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCe-eccceeeeccCCCccceeeeeeEee------------cCCCc
Q 010819 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (500)
Q Consensus 279 ~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~-~l~~~di~~~~g~~~~~~~~l~~l~------------l~~n~ 345 (500)
++++++++|+|||||||+.. ...++|+|+|++||+ .++++|+..++|...+..+.+.+.. ..++.
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998899999999999975 457899999999998 5788999887776556555443321 24568
Q ss_pred EEEEecCc-chhhhhhccccccc
Q 010819 346 LTVKLVPV-VGAALISGLENYAL 367 (500)
Q Consensus 346 L~~~l~~~-~~~piLnalEi~~l 367 (500)
|.+++.|. ...|+||||||++-
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEESS
T ss_pred EEEEEeccCCCCcEEEEEEEEeC
Confidence 99999875 33499999999864
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.41 E-value=4.5e-13 Score=133.35 Aligned_cols=122 Identities=25% Similarity=0.453 Sum_probs=97.3
Q ss_pred CCChhHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCc--cCCcccccC
Q 010819 373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL 447 (500)
Q Consensus 373 ~t~p~~~~~l~~lk~~l~~~~-~~~w~~--~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g--~ip~~~~~L 447 (500)
.+.+.|..+|.++|..+..+. ..+|.. ++|. +.|.|+.|..... ..+++.|+|++|+++| .+|+.++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCC
Confidence 367889999999999886442 247853 3441 2499999975321 1358999999999999 899999999
Q ss_pred CCCCeEEccc-CCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 448 SNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 448 ~~L~~L~Ls~-N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
++|++|+|++ |++.|.+|+.++. ++|++|+|++|+++|.+|..+.++++|++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 9999999995 8899889988888 888888888888888888888888888764
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.37 E-value=3.3e-13 Score=150.61 Aligned_cols=161 Identities=23% Similarity=0.353 Sum_probs=108.8
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCC-----CCCCC-C-------
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDR-----MGWNG-D------- 400 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~-----~~w~~-~------- 400 (500)
.+..+++++|++.+.+|...+. +..++.+++..|. .+++|.++..+..+......... .+... .
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGD--CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGG--CTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCEEECCCCcccCcCCHHHcC--CCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 4666777777777777777666 6677777777766 55777665443222110000000 00000 0
Q ss_pred -------------------CCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCC
Q 010819 401 -------------------PCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG 461 (500)
Q Consensus 401 -------------------pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~ 461 (500)
+|.... ..+.|... ........++.|+|++|+++|.+|.++++|++|+.|+|++|+++
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~g~~~--~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~ 669 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITS-RVYGGHTS--PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTS-CEEEEECC--CSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ccccccccchhhhcccccccccccc-ceecccCc--hhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccC
Confidence 000000 01112111 11223356889999999999999999999999999999999999
Q ss_pred ccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 462 GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 462 G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
|.||+.++. ++|+.|||++|+++|.||..++++++|++|
T Consensus 670 g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L 709 (768)
T 3rgz_A 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI 709 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred CCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence 999999999 999999999999999999999999998864
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=5e-12 Score=142.06 Aligned_cols=118 Identities=19% Similarity=0.279 Sum_probs=98.0
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCCCC------------ceeeecCCCCCceeeEEEEEeCCCCCC
Q 010819 374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK 437 (500)
Q Consensus 374 t~p~~~~~l~~lk~~l~~~~~~~w~~~p----c~~~~~~~w------------~gv~c~~~~~~~~~~l~~L~Ls~n~l~ 437 (500)
+...|..||.++|..+..+ +|+... +.|+. |.| .|+.|+.. .+++.|+|++++|.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~-C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHS-LNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK 336 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCC-CSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCc-cccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence 3457899999999988643 785432 11211 588 99999753 36999999999999
Q ss_pred ccCCcccccCCCCCeEEc-ccCCCCcc-----------------------------------------------------
Q 010819 438 GYISDKISLLSNLVNLNL-STNSLGGT----------------------------------------------------- 463 (500)
Q Consensus 438 g~ip~~~~~L~~L~~L~L-s~N~l~G~----------------------------------------------------- 463 (500)
|.+|++|++|++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 88876665
Q ss_pred -----------------------CCCcccc-CCccEEEccCCCCCc-----------------cCccccC--CCCCCccC
Q 010819 464 -----------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKLQLV 500 (500)
Q Consensus 464 -----------------------iP~~l~~-~~L~~L~Ls~N~l~G-----------------~iP~~l~--~l~~L~~L 500 (500)
||+.++. ++|+.|+|++|+|+| .||+.++ +|++|++|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 8888888 999999999999999 4999988 99999875
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.22 E-value=1.3e-11 Score=134.75 Aligned_cols=115 Identities=19% Similarity=0.359 Sum_probs=95.2
Q ss_pred ChhHHHHHHHHHHhcCCCC----------CCCCCCC-CCCCCCCCCC---ceeeecCCCCCceeeEEEEEeCCCCCCccC
Q 010819 375 VPEQVIAMRALKESLRVPD----------RMGWNGD-PCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGYI 440 (500)
Q Consensus 375 ~p~~~~~l~~lk~~l~~~~----------~~~w~~~-pc~~~~~~~w---~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~i 440 (500)
...|..||.+++..+..+. ..+|+.+ +| |.| .||.|+.. .+++.|+|++++++|.+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGRV 97 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCcC
Confidence 3568889999988764321 1246432 33 678 99999754 36999999999999999
Q ss_pred CcccccCCCCCeEEcccC--------------------------------------------------------------
Q 010819 441 SDKISLLSNLVNLNLSTN-------------------------------------------------------------- 458 (500)
Q Consensus 441 p~~~~~L~~L~~L~Ls~N-------------------------------------------------------------- 458 (500)
|+++++|++|+.|+|++|
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 999999999999999988
Q ss_pred ----------------CCCccCCCcccc-CCccEEEccCCCCCcc-----------------CccccC--CCCCCccC
Q 010819 459 ----------------SLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLV 500 (500)
Q Consensus 459 ----------------~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~-----------------iP~~l~--~l~~L~~L 500 (500)
+++| ||+.++. ++|++|+|++|+++|. +|+.++ ++++|++|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 4456 8999999 9999999999999996 999999 99999875
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.17 E-value=3.4e-12 Score=127.93 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=68.2
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+..|+.|+|++|.+++ +|+.++.+++|+.|+|++|++.+.+|..++. ++|+.|+|++|++.+.+|..++++++|++|
T Consensus 205 l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp CTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 3458889999999984 7778999999999999999999999998888 999999999999999999999999988764
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.16 E-value=4.4e-12 Score=127.09 Aligned_cols=148 Identities=14% Similarity=0.140 Sum_probs=103.0
Q ss_pred eeeEeecCCCcEEEEecCcchh-------hhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC
Q 010819 335 HYVAKNLSSTELTVKLVPVVGA-------ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNW 407 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~-------piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~ 407 (500)
.+..+++++|++.+.+|...+. .-+..++.+.+..+....+|..+..+..|+. +.+..
T Consensus 151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~-L~L~~-------------- 215 (328)
T 4fcg_A 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS-LKIRN-------------- 215 (328)
T ss_dssp TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCE-EEEES--------------
T ss_pred CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCE-EEccC--------------
Confidence 3455555554444455544321 1144566666666665566665555444433 11111
Q ss_pred CCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCcc
Q 010819 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~ 486 (500)
+...++.. .......|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++. ++|+.|+|++|++.|.
T Consensus 216 N~l~~l~~---~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 216 SPLSALGP---AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp SCCCCCCG---GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred CCCCcCch---hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 01111111 1112345899999999999999999999999999999999999999999998 9999999999999999
Q ss_pred CccccCCCCCCccC
Q 010819 487 IPDSLTSSSKLQLV 500 (500)
Q Consensus 487 iP~~l~~l~~L~~L 500 (500)
+|+.+++|++|+.+
T Consensus 293 iP~~l~~L~~L~~l 306 (328)
T 4fcg_A 293 LPSLIAQLPANCII 306 (328)
T ss_dssp CCGGGGGSCTTCEE
T ss_pred ccHHHhhccCceEE
Confidence 99999999998753
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.12 E-value=2.5e-11 Score=135.44 Aligned_cols=153 Identities=29% Similarity=0.403 Sum_probs=72.6
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC------
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNW------ 407 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~------ 407 (500)
.++.+.+++|++++.+|..... +..++.+.+..+. .+.+|..+..+..|+. +.+... .-.+. .|..+
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~-L~L~~n-~l~~~--~p~~~~~l~~L 468 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRD-LKLWLN-MLEGE--IPQELMYVKTL 468 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCE-EECCSS-CCCSC--CCGGGGGCTTC
T ss_pred CccEEECCCCccccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCE-EECCCC-cccCc--CCHHHcCCCCc
Confidence 3556666677777666666655 5566666666665 3456665555544433 111110 00000 00000
Q ss_pred -------CCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEcc
Q 010819 408 -------DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (500)
Q Consensus 408 -------~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls 479 (500)
+...|... ........++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++. ++|+.|+|+
T Consensus 469 ~~L~L~~N~l~~~~p--~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 469 ETLILDFNDLTGEIP--SGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 546 (768)
T ss_dssp CEEECCSSCCCSCCC--GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECC
T ss_pred eEEEecCCcccCcCC--HHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECC
Confidence 00000000 00011123455555555555555555555555555555555555555555555 555555555
Q ss_pred CCCCCccCccccCCCC
Q 010819 480 DNQFTGSIPDSLTSSS 495 (500)
Q Consensus 480 ~N~l~G~iP~~l~~l~ 495 (500)
+|+++|.+|..+.++.
T Consensus 547 ~N~l~g~ip~~~~~~~ 562 (768)
T 3rgz_A 547 TNLFNGTIPAAMFKQS 562 (768)
T ss_dssp SSEEESBCCGGGGTTT
T ss_pred CCccCCcCChHHhccc
Confidence 5555555555554443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.08 E-value=1.6e-11 Score=122.00 Aligned_cols=146 Identities=16% Similarity=0.210 Sum_probs=97.3
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
..++.+++++|++++.+|..... +..++.+.+..+. .+.+|..+..+..|+. +.+.. +...|
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~L~~--------------N~l~~ 163 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPDFLSQ--IKTLVTLDFSYNALSGTLPPSISSLPNLVG-ITFDG--------------NRISG 163 (313)
T ss_dssp TTCSEEEEEEECCEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCE-EECCS--------------SCCEE
T ss_pred CCCCEEECcCCeeCCcCCHHHhC--CCCCCEEeCCCCccCCcCChHHhcCCCCCe-EECcC--------------CcccC
Confidence 35667777777787777776665 6677777777776 3466766655555543 22211 11121
Q ss_pred eeecCCCCCcee-eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccc
Q 010819 413 ITCHPNKDETAV-VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (500)
Q Consensus 413 v~c~~~~~~~~~-~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~ 490 (500)
.... ...... .++.|+|++|.++|.+|..+..++ |+.|+|++|.+++.+|..+.. ++|+.|+|++|++++.+|.
T Consensus 164 ~~p~--~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~- 239 (313)
T 1ogq_A 164 AIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK- 239 (313)
T ss_dssp ECCG--GGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-
T ss_pred cCCH--HHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-
Confidence 1110 011112 477888888888888888888887 888888888888888887777 8888888888888877665
Q ss_pred cCCCCCCccC
Q 010819 491 LTSSSKLQLV 500 (500)
Q Consensus 491 l~~l~~L~~L 500 (500)
+..+++|++|
T Consensus 240 ~~~l~~L~~L 249 (313)
T 1ogq_A 240 VGLSKNLNGL 249 (313)
T ss_dssp CCCCTTCCEE
T ss_pred ccccCCCCEE
Confidence 6777777654
No 11
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=7e-10 Score=100.07 Aligned_cols=93 Identities=16% Similarity=0.193 Sum_probs=77.1
Q ss_pred CCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|+.+.|....... ...++.|+|++|++++..|..|..|++|++|+|++|+|++..|..+.. ++|+.|+|++|
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 678888887554321 245889999999999888999999999999999999999655555667 99999999999
Q ss_pred CCCccCccccCCCCCCccC
Q 010819 482 QFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~L 500 (500)
+|++..|..+.++++|++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhcCCCCCCEE
Confidence 9996555578999998864
No 12
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.98 E-value=3.6e-10 Score=108.39 Aligned_cols=76 Identities=28% Similarity=0.354 Sum_probs=52.3
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 4677777777777555555677777777777777777554445666 777777777777775555567777776653
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.98 E-value=2e-10 Score=108.11 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=82.2
Q ss_pred EEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCc-chhhhhhcccccccccCCCCCChh-HHHHHHHHH
Q 010819 309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTVPE-QVIAMRALK 386 (500)
Q Consensus 309 ~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~-~~~piLnalEi~~l~~~~~~t~p~-~~~~l~~lk 386 (500)
.|.+.++.+..++. .... ..+.+.+++|+++...+.. ... +..++.+.+..+....++. .+..+
T Consensus 15 ~l~~s~n~l~~iP~-----~~~~---~~~~L~L~~N~l~~~~~~~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l---- 80 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-----HIPQ---YTAELRLNNNEFTVLEATGIFKK--LPQLRKINFSNNKITDIEEGAFEGA---- 80 (220)
T ss_dssp EEECCSSCCSSCCS-----CCCT---TCSEEECCSSCCCEECCCCCGGG--CTTCCEEECCSSCCCEECTTTTTTC----
T ss_pred EeEeCCCCcccCcc-----CCCC---CCCEEEcCCCcCCccCchhhhcc--CCCCCEEECCCCcCCEECHHHhCCC----
Confidence 46666666654431 1111 2356788899888443433 344 6678888887776544432 11111
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC
Q 010819 387 ESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS 466 (500)
Q Consensus 387 ~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~ 466 (500)
..|+.|+|++|.+++..+..|..|++|++|+|++|++++..|.
T Consensus 81 -------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 81 -------------------------------------SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp -------------------------------------TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTT
T ss_pred -------------------------------------CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHh
Confidence 2255666666666655555566666666666666666665566
Q ss_pred cccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 467 GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 467 ~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.+.. ++|+.|+|++|++++..|..+..+++|+.
T Consensus 124 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 124 SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 6655 66666666666666555666666666654
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.97 E-value=3.6e-10 Score=123.34 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=68.8
Q ss_pred CCceeeEEEEEeCCCCCCcc-----------------CCcccc--cCCCCCeEEcccCCCCccCCCcccc-CCccEEEcc
Q 010819 420 DETAVVISQIDLGSQGLKGY-----------------ISDKIS--LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (500)
Q Consensus 420 ~~~~~~l~~L~Ls~n~l~g~-----------------ip~~~~--~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls 479 (500)
.+.+..|+.|+|++|.++|. +|++++ +|++|++|+|++|++.|.+|+.++. ++|+.|+|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 33456688999999999986 999998 9999999999999999999999988 999999999
Q ss_pred CCC-CCc-cCccccCCC------CCCccC
Q 010819 480 DNQ-FTG-SIPDSLTSS------SKLQLV 500 (500)
Q Consensus 480 ~N~-l~G-~iP~~l~~l------~~L~~L 500 (500)
+|+ ++| .+|..++++ ++|++|
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEE
Confidence 998 998 888877665 666653
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.97 E-value=4.5e-10 Score=109.67 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=64.7
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..|+.|+|++|++++..+..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 45888999999998666667889999999999999999888888888 899999999999997655668888888754
No 16
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.94 E-value=1.4e-09 Score=100.07 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=51.6
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..|+.|+|++|.+++..|..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++.+|..+..+++|++|
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 34566667777766666666667777777777777776666655666 677777777777776666666666666643
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.1e-10 Score=131.09 Aligned_cols=78 Identities=19% Similarity=0.248 Sum_probs=66.8
Q ss_pred ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCC-CCc-cCCCcccc-C-------CccEEEccCCCCCccCcc--
Q 010819 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGG-TLPSGLGQ-Q-------SLVRLDLSDNQFTGSIPD-- 489 (500)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G-~iP~~l~~-~-------~L~~L~Ls~N~l~G~iP~-- 489 (500)
.+..|+.|+|++|.+.|.+|..+++|++|+.|+|++|+ ++| .+|+.++. + +|+.|+|++|+++ .||.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 34568889999999999999999999999999999998 998 88887765 5 8999999999998 8888
Q ss_pred ccCCCCCCccC
Q 010819 490 SLTSSSKLQLV 500 (500)
Q Consensus 490 ~l~~l~~L~~L 500 (500)
.++++++|++|
T Consensus 568 ~l~~L~~L~~L 578 (876)
T 4ecn_A 568 SLQKMVKLGLL 578 (876)
T ss_dssp HHTTCTTCCEE
T ss_pred hhhcCCCCCEE
Confidence 88888888764
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.92 E-value=7.2e-10 Score=107.69 Aligned_cols=63 Identities=24% Similarity=0.326 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..+.. ++|+.|+|++|.+.|.+|
T Consensus 159 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 159 LTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 444555555554433334444555555555555555433333444 445555555555444433
No 19
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=98.92 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=59.0
Q ss_pred CCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|..+.|....... ...++.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|
T Consensus 10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 566777776443221 124667777777776 66677777777777777777777555555666 67777777777
Q ss_pred CCCccCccccCCCCCCccC
Q 010819 482 QFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~L 500 (500)
++++..|..+..+++|++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L 107 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLL 107 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEE
T ss_pred ccCEeCHHHhCCCCCCCEE
Confidence 7775555566666666543
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=3.2e-09 Score=96.17 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=73.6
Q ss_pred CCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|....+.|....... ...++.|+|++|.+++..|..|.+|++|+.|+|++|+|++..+..+.. ++|+.|+|++|
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 555667776443221 245889999999999988999999999999999999999644444567 99999999999
Q ss_pred CCCccCccccCCCCCCccC
Q 010819 482 QFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~L 500 (500)
+|++..|..+.++++|++|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEE
T ss_pred ccceeCHHHhccccCCCEE
Confidence 9995444458899998864
No 21
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.90 E-value=1.1e-09 Score=107.50 Aligned_cols=143 Identities=26% Similarity=0.309 Sum_probs=89.4
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~ 414 (500)
.++.+.+++|.++ .+++. +. +..++.+.+..+....+|..+..+..|+. +.+.. +...++.
T Consensus 56 ~L~~L~L~~n~l~-~~~~~-~~--l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~-L~l~~--------------N~l~~l~ 116 (290)
T 1p9a_G 56 RLTQLNLDRAELT-KLQVD-GT--LPVLGTLDLSHNQLQSLPLLGQTLPALTV-LDVSF--------------NRLTSLP 116 (290)
T ss_dssp TCCEEECTTSCCC-EEECC-SC--CTTCCEEECCSSCCSSCCCCTTTCTTCCE-EECCS--------------SCCCCCC
T ss_pred CCCEEECCCCccC-cccCC-CC--CCcCCEEECCCCcCCcCchhhccCCCCCE-EECCC--------------CcCcccC
Confidence 4566667777666 34433 22 55677777776666666654433333322 11111 0111111
Q ss_pred ecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCccccC
Q 010819 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
. .....+..|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|+. +.. ++|+.|+|++|+++ .+|..+.
T Consensus 117 ~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~ 192 (290)
T 1p9a_G 117 L--GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192 (290)
T ss_dssp S--STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTT
T ss_pred H--HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhc
Confidence 0 00112245788999999998766666788899999999999998 45544 455 88999999999998 7888888
Q ss_pred CCCCCccC
Q 010819 493 SSSKLQLV 500 (500)
Q Consensus 493 ~l~~L~~L 500 (500)
.+.+|+.|
T Consensus 193 ~~~~L~~l 200 (290)
T 1p9a_G 193 GSHLLPFA 200 (290)
T ss_dssp TTCCCSEE
T ss_pred ccccCCeE
Confidence 87777653
No 22
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.89 E-value=2.4e-09 Score=101.39 Aligned_cols=93 Identities=19% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|+++.|....... ...++.|+|++|.+++..|..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 689999998654321 235788888888888877888888888888888888886333334455 78888888888
Q ss_pred CCCccCccccCCCCCCccC
Q 010819 482 QFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~L 500 (500)
++++..+..+..+++|++|
T Consensus 99 ~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEE
T ss_pred cCCccChhHhCcchhhCeE
Confidence 8875544556677777653
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.88 E-value=1.1e-09 Score=107.55 Aligned_cols=163 Identities=19% Similarity=0.242 Sum_probs=109.4
Q ss_pred EEEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHH
Q 010819 308 FDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKE 387 (500)
Q Consensus 308 F~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~ 387 (500)
..|.+.++.++.++. ... ..++.+++++|+++...+..... +..++.+.+..+....++.. ..+..|+.
T Consensus 13 ~~l~~~~~~l~~ip~-----~~~---~~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 13 LEVNCDKRNLTALPP-----DLP---KDTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp CEEECTTSCCSSCCS-----CCC---TTCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cEEECCCCCCCcCCC-----CCC---CCCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 356667766655441 121 24678889999998555555555 77888899888876666543 22222222
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc
Q 010819 388 SLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG 467 (500)
Q Consensus 388 ~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~ 467 (500)
+.++. +. ...+ +........++.|+|++|++++..+..|..+++|+.|+|++|++++..+..
T Consensus 82 -L~Ls~----N~----------l~~l---~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 82 -LDLSH----NQ----------LQSL---PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp -EECCS----SC----------CSSC---CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred -EECCC----Cc----------CCcC---chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 11111 10 1100 111112345889999999999777788999999999999999999655555
Q ss_pred ccc-CCccEEEccCCCCCccCcc-ccCCCCCCccC
Q 010819 468 LGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV 500 (500)
Q Consensus 468 l~~-~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L 500 (500)
+.. ++|+.|+|++|+++ .+|. .+.++++|++|
T Consensus 144 ~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 177 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTL 177 (290)
T ss_dssp TTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEE
T ss_pred cccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEE
Confidence 666 99999999999999 5565 56778888764
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.86 E-value=1.9e-09 Score=99.14 Aligned_cols=66 Identities=27% Similarity=0.400 Sum_probs=60.4
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
+..|+.|+|++|++++..+..|..+++|++|+|++|++++.+|..+.. ++|+.|+|++|.+++..+
T Consensus 77 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 77 ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 456899999999999888888999999999999999999999999988 999999999999998766
No 25
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.86 E-value=3.3e-09 Score=100.37 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=26.7
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChh
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE 377 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~ 377 (500)
.++.+++++|+++...+..... +..++.+.+..+....+|.
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDS--LINLKELYLGSNQLGALPV 81 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCT
T ss_pred CCCEEEcCCCccCccCHHHhhC--ccCCcEEECCCCCCCCcCh
Confidence 4667778888877444444444 5677777877776655553
No 26
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.84 E-value=4.8e-09 Score=94.79 Aligned_cols=92 Identities=17% Similarity=0.211 Sum_probs=54.7
Q ss_pred CCCceeeecCCCCC-----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|.++.|...... ....++.|++++|++++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++|
T Consensus 7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 67777777644321 1134666777777776554555666677777777777666443344455 66666666666
Q ss_pred CCCccCccccCCCCCCcc
Q 010819 482 QFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~ 499 (500)
++++..|..+.++++|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CCCCCCTTTTTTCTTCCE
T ss_pred CccccCHHHhhCCcccCE
Confidence 666444444555555554
No 27
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.82 E-value=1.5e-09 Score=105.90 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=81.0
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.+..+++++|.++...+..... +..++.+.+..+....++.+ +..+..|+. +.+.. +...++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~--------------n~l~~~ 168 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNALQALPDDTFRDLGNLTH-LFLHG--------------NRISSV 168 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECCS--------------SCCCEE
T ss_pred CCCEEECCCCcCCEECHhHhhC--CcCCCEEECCCCcccccCHhHhccCCCccE-EECCC--------------Cccccc
Confidence 4666777777766332333333 55677777776665555433 333333322 11111 011111
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
... .......|+.|+|++|.+++..|..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|.+....+
T Consensus 169 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 169 PER--AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp CTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred CHH--HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 110 0112245778888888888887888888888888888888888655555666 888888888888876544
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=5.7e-10 Score=109.98 Aligned_cols=147 Identities=18% Similarity=0.201 Sum_probs=103.3
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChh--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE--QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~--~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~ 411 (500)
..+..+++++|.+. .+++.... +..+|.+.+..+....++. .+..+..|+. +.+.. +...
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~~--------------n~l~ 139 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY-LDISH--------------THTR 139 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEET--CTTCCEEECTTSEEESSTTTTTTTTCTTCCE-EECTT--------------SCCE
T ss_pred cccCEEECCCCccc-cChhhcCC--CCCCCEEECCCCcccccccchhhhhccCCCE-EECCC--------------CcCC
Confidence 35778888888887 56666555 6778888887776444442 2333333322 11111 0111
Q ss_pred eeeecCCCCCceeeEEEEEeCCCCCCc-cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 412 GITCHPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
+... ........++.|+|++|.+++ .+|..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..+.
T Consensus 140 ~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 140 VAFN--GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ECST--TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ccch--hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 1111 111123458899999999987 68999999999999999999999888888888 9999999999999976666
Q ss_pred ccCCCCCCccC
Q 010819 490 SLTSSSKLQLV 500 (500)
Q Consensus 490 ~l~~l~~L~~L 500 (500)
.+..+++|++|
T Consensus 218 ~~~~l~~L~~L 228 (306)
T 2z66_A 218 PYKCLNSLQVL 228 (306)
T ss_dssp GGTTCTTCCEE
T ss_pred hccCcccCCEe
Confidence 78888888764
No 29
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.82 E-value=2.5e-09 Score=103.62 Aligned_cols=76 Identities=22% Similarity=0.309 Sum_probs=51.1
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
..|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..+..+..+++|+.
T Consensus 133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKM 209 (270)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCE
Confidence 34677777777777555555777777777777777777544445666 77777777777777443445666666664
No 30
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.81 E-value=8.8e-09 Score=96.83 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=40.6
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
|+.|+|++|.++...+..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|+.
T Consensus 82 L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCE
Confidence 455666666665333333455666666666666666555555555 55666666666665444444555555543
No 31
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.81 E-value=6.3e-09 Score=104.43 Aligned_cols=91 Identities=22% Similarity=0.254 Sum_probs=73.7
Q ss_pred CCCceeeecCC-CC------CceeeEEEEEeCC-CCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEc
Q 010819 408 DAWEGITCHPN-KD------ETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDL 478 (500)
Q Consensus 408 ~~w~gv~c~~~-~~------~~~~~l~~L~Ls~-n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~L 478 (500)
|.|..+.|... .. .....|+.|+|++ |.|++..+..|++|++|+.|+|++|+|+|..|..+.. ++|+.|+|
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 67888999765 22 2234589999996 9999888889999999999999999999988888888 99999999
Q ss_pred cCCCCCccCccc-cCCCCCCccC
Q 010819 479 SDNQFTGSIPDS-LTSSSKLQLV 500 (500)
Q Consensus 479 s~N~l~G~iP~~-l~~l~~L~~L 500 (500)
++|+|++ +|.. +..++ |+.|
T Consensus 88 ~~N~l~~-~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 88 SFNALES-LSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSSCCSC-CCSTTTCSCC-CCEE
T ss_pred CCCccce-eCHHHcccCC-ceEE
Confidence 9999995 5554 44443 6543
No 32
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.81 E-value=2.6e-09 Score=98.43 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=38.0
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
|+.|+|++|.+++..|..|..|++|+.|+|++|++++..+..+.. ++|+.|+|++|.+..
T Consensus 80 L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 80 LLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 566667777776655566666777777777777766433334555 667777777766653
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.80 E-value=8.1e-09 Score=95.81 Aligned_cols=92 Identities=21% Similarity=0.234 Sum_probs=58.1
Q ss_pred CCCceeeecCCCCC-----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|.++.|...+.. ....++.|+|++|++++..+..+..+++|++|+|++|++++..+..+.. ++|++|+|++|
T Consensus 7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 7 CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 67888888754321 1234677777777777555555677777777777777777443334455 67777777777
Q ss_pred CCCccCccccCCCCCCcc
Q 010819 482 QFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~ 499 (500)
++++..+..+.++++|++
T Consensus 87 ~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCCCCCTTTTTTCTTCCE
T ss_pred cCCccCHhHhcCccCCCE
Confidence 776444444566666654
No 34
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.80 E-value=1e-09 Score=117.98 Aligned_cols=75 Identities=25% Similarity=0.395 Sum_probs=63.8
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccC-ccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~i-P~~l~~l~~L~~L 500 (500)
+..|+.|+|++|.|+ .+|..++.|++|+.|+|++|+|++ +| .++. ++|+.|+|++|++++.+ |..+++|++|+.|
T Consensus 462 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 462 LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 456888999999998 888899999999999999999986 77 7777 88999999999998776 8888888888764
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.79 E-value=3.2e-09 Score=110.76 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=100.5
Q ss_pred eeeeEeecCCCcEEEEecC-cchhhhhhcccccccccC-CCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPN-DLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~-~~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..+..+++++|++. .+++ .... +..++.+.+..+ ..+.++.+ +..+..|+. +.+.. +..
T Consensus 147 ~~L~~L~L~~N~l~-~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~-L~L~~--------------n~l 208 (452)
T 3zyi_A 147 SKLRELWLRNNPIE-SIPSYAFNR--VPSLMRLDLGELKKLEYISEGAFEGLFNLKY-LNLGM--------------CNI 208 (452)
T ss_dssp TTCCEEECCSCCCC-EECTTTTTT--CTTCCEEECCCCTTCCEECTTTTTTCTTCCE-EECTT--------------SCC
T ss_pred CCCCEEECCCCCcc-eeCHhHHhc--CCcccEEeCCCCCCccccChhhccCCCCCCE-EECCC--------------Ccc
Confidence 35777888888887 5554 3333 566777777663 34444432 223333322 11111 011
Q ss_pred ceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 411 EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
.++. .......|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..+.
T Consensus 209 ~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 209 KDMP----NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp SSCC----CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccc----cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 1110 1122345889999999999988999999999999999999999888888888 9999999999999966666
Q ss_pred ccCCCCCCccC
Q 010819 490 SLTSSSKLQLV 500 (500)
Q Consensus 490 ~l~~l~~L~~L 500 (500)
.+..+++|+.|
T Consensus 285 ~~~~l~~L~~L 295 (452)
T 3zyi_A 285 LFTPLRYLVEL 295 (452)
T ss_dssp SSTTCTTCCEE
T ss_pred HhccccCCCEE
Confidence 77888888764
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.78 E-value=2e-09 Score=106.03 Aligned_cols=148 Identities=17% Similarity=0.144 Sum_probs=102.7
Q ss_pred eeeeEeecCCCcEEEEecC--cchhhhhhcccccccccCCCC-CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVP--VVGAALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~--~~~~piLnalEi~~l~~~~~~-t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..+..+++++|+++ .+++ .... +..++.+.+..+... ..+..+..+..|+. +.+.. +..
T Consensus 101 ~~L~~L~l~~n~l~-~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~l~~--------------n~l 162 (306)
T 2z66_A 101 EQLEHLDFQHSNLK-QMSEFSVFLS--LRNLIYLDISHTHTRVAFNGIFNGLSSLEV-LKMAG--------------NSF 162 (306)
T ss_dssp TTCCEEECTTSEEE-SSTTTTTTTT--CTTCCEEECTTSCCEECSTTTTTTCTTCCE-EECTT--------------CEE
T ss_pred CCCCEEECCCCccc-ccccchhhhh--ccCCCEEECCCCcCCccchhhcccCcCCCE-EECCC--------------Ccc
Confidence 35778889999887 4443 3333 667888888877643 33333333333322 11111 111
Q ss_pred ceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 411 EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
.+.. .+........++.|+|++|.+++..|..+..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..|.
T Consensus 163 ~~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 163 QENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp GGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccc-chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 1100 0111122356899999999999888999999999999999999999766667777 9999999999999999999
Q ss_pred ccCCCC-CCccC
Q 010819 490 SLTSSS-KLQLV 500 (500)
Q Consensus 490 ~l~~l~-~L~~L 500 (500)
.+..++ +|+.|
T Consensus 242 ~~~~~~~~L~~L 253 (306)
T 2z66_A 242 ELQHFPSSLAFL 253 (306)
T ss_dssp SCCCCCTTCCEE
T ss_pred HHHhhhccCCEE
Confidence 999884 78754
No 37
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.77 E-value=1e-08 Score=96.44 Aligned_cols=73 Identities=26% Similarity=0.308 Sum_probs=36.3
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
|+.|+|++|.+++..|..|.+|++|++|+|++|+++ .+|+. +.. ++|+.|+|++|++++..|..+..+++|++
T Consensus 58 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 132 (220)
T 2v9t_B 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132 (220)
T ss_dssp CCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCE
Confidence 444455555554444445555555555555555555 23332 233 55555555555555444555555555544
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.77 E-value=4e-09 Score=109.66 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=98.1
Q ss_pred eeeeEeecCCCcEEEEecC-cchhhhhhcccccccccCC-CCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPND-LSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~~-~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..+..+++++|++. .+++ .... +..++.+.+..+. .+.++.. +..+..|+. +.+.. + ..
T Consensus 136 ~~L~~L~L~~N~i~-~~~~~~~~~--l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~-L~L~~----n----------~l 197 (440)
T 3zyj_A 136 SKLKELWLRNNPIE-SIPSYAFNR--IPSLRRLDLGELKRLSYISEGAFEGLSNLRY-LNLAM----C----------NL 197 (440)
T ss_dssp SSCCEEECCSCCCC-EECTTTTTT--CTTCCEEECCCCTTCCEECTTTTTTCSSCCE-EECTT----S----------CC
T ss_pred ccCceeeCCCCccc-ccCHHHhhh--CcccCEeCCCCCCCcceeCcchhhcccccCe-ecCCC----C----------cC
Confidence 35677778888777 4444 3333 5667777776633 4444432 222222222 11111 0 11
Q ss_pred ceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 411 EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
..+. .......|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..+.
T Consensus 198 ~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 198 REIP----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp SSCC----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred cccc----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 1110 1122346899999999999988999999999999999999999888888888 9999999999999966666
Q ss_pred ccCCCCCCccC
Q 010819 490 SLTSSSKLQLV 500 (500)
Q Consensus 490 ~l~~l~~L~~L 500 (500)
.+..+++|+.|
T Consensus 274 ~~~~l~~L~~L 284 (440)
T 3zyj_A 274 LFTPLHHLERI 284 (440)
T ss_dssp TTSSCTTCCEE
T ss_pred HhccccCCCEE
Confidence 77888888764
No 39
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.77 E-value=3.3e-09 Score=101.59 Aligned_cols=76 Identities=20% Similarity=0.231 Sum_probs=66.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|+.|+|++|++++..|..++++++|++|
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 4889999999999777788999999999999999999655555677 999999999999996666679999998865
No 40
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=2.2e-09 Score=94.13 Aligned_cols=122 Identities=18% Similarity=0.185 Sum_probs=90.5
Q ss_pred eeeEeecCCCcEE-EEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~-~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|.++ +.+++.... +..++.+.+..+....+ .
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~--l~~L~~L~l~~n~l~~~-----------~-------------------------- 58 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDE--FEELEFLSTINVGLTSI-----------A-------------------------- 58 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTT--CTTCCEEECTTSCCCCC-----------T--------------------------
T ss_pred cCeEEEccCCcCChhHHHHHHhh--cCCCcEEECcCCCCCCc-----------h--------------------------
Confidence 4566777888776 566665554 55667776665543222 0
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCcc-CCCcccc-CCccEEEccCCCCCccCc---
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIP--- 488 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~-iP~~l~~-~~L~~L~Ls~N~l~G~iP--- 488 (500)
.......++.|+|++|.+++.+|..+..+++|+.|+|++|.+++. .|..++. ++|+.|++++|++++..+
T Consensus 59 -----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 133 (149)
T 2je0_A 59 -----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRE 133 (149)
T ss_dssp -----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHH
T ss_pred -----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHH
Confidence 000113478899999999988999899999999999999999973 4577888 999999999999996655
Q ss_pred cccCCCCCCccC
Q 010819 489 DSLTSSSKLQLV 500 (500)
Q Consensus 489 ~~l~~l~~L~~L 500 (500)
..+..+++|+.|
T Consensus 134 ~~~~~l~~L~~L 145 (149)
T 2je0_A 134 NVFKLLPQLTYL 145 (149)
T ss_dssp HHHHHCTTCCEE
T ss_pred HHHHHCCCcccc
Confidence 468888888864
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.74 E-value=6.6e-09 Score=100.81 Aligned_cols=164 Identities=20% Similarity=0.267 Sum_probs=111.5
Q ss_pred EEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhH-HHHHHHHHH
Q 010819 309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKE 387 (500)
Q Consensus 309 ~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk~ 387 (500)
.+.++++.+...+ . ......++.+++++|.+.. + +.... +..++.+.+..+....++.+ +..+..|+.
T Consensus 45 ~L~l~~~~i~~~~------~-l~~l~~L~~L~l~~n~l~~-~-~~l~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 45 QIIANNSDIKSVQ------G-IQYLPNVRYLALGGNKLHD-I-SALKE--LTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp EEECTTSCCCCCT------T-GGGCTTCCEEECTTSCCCC-C-GGGTT--CTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred eeeeCCCCccccc------c-cccCCCCcEEECCCCCCCC-c-hhhcC--CCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 4666666554322 1 1223457788899988873 3 23333 67888899988876665543 344444433
Q ss_pred hcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc
Q 010819 388 SLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG 467 (500)
Q Consensus 388 ~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~ 467 (500)
+.+.. +...++... ....+..|+.|+|++|.+++..+..++.+++|+.|+|++|++++..|..
T Consensus 114 -L~L~~--------------n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 114 -LVLVE--------------NQLQSLPDG--VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp -EECTT--------------SCCCCCCTT--TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred -EECCC--------------CcCCccCHH--HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 22211 111111110 0112345899999999999777777899999999999999999776666
Q ss_pred ccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 468 LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 468 l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
++. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEE
Confidence 777 999999999999998777778999998864
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.73 E-value=4.4e-09 Score=101.87 Aligned_cols=146 Identities=22% Similarity=0.276 Sum_probs=97.4
Q ss_pred eeeEeecCCCcEEEEecC-cchhhhhhcccccccccCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~~~~t~p~~~-~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
.++.+++++|++. .+++ .... +..++.+.+..+....++... ..+..|+. +.+.. + ...+
T Consensus 38 ~l~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~-L~l~~----n----------~l~~ 99 (270)
T 2o6q_A 38 DTKKLDLQSNKLS-SLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELKNLET-LWVTD----N----------KLQA 99 (270)
T ss_dssp TCSEEECCSSCCS-CCCTTSSSS--CTTCCEEECCSSCCSCCCTTTTSSCTTCCE-EECCS----S----------CCCC
T ss_pred CCCEEECcCCCCC-eeCHHHhcC--CCCCCEEECCCCccCeeChhhhcCCCCCCE-EECCC----C----------cCCc
Confidence 3556777777776 3443 3444 667777777777666666542 23333332 11111 0 0111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
+.. ........|+.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.. ++|+.|+|++|++++..|..+
T Consensus 100 ~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 100 LPI--GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCT--TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCH--hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 100 00112345889999999999888888999999999999999999655555777 999999999999997655678
Q ss_pred CCCCCCccC
Q 010819 492 TSSSKLQLV 500 (500)
Q Consensus 492 ~~l~~L~~L 500 (500)
.++++|++|
T Consensus 178 ~~l~~L~~L 186 (270)
T 2o6q_A 178 DKLTELKTL 186 (270)
T ss_dssp TTCTTCCEE
T ss_pred ccCCCcCEE
Confidence 888888764
No 43
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.73 E-value=1.5e-08 Score=95.13 Aligned_cols=76 Identities=20% Similarity=0.210 Sum_probs=46.6
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|++|
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 3555666666666555555666666666666666666554444555 666666666666666556666666666543
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.73 E-value=4.1e-09 Score=113.82 Aligned_cols=75 Identities=27% Similarity=0.173 Sum_probs=50.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCC-CCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS-KLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~ 499 (500)
..++.|+|++|.+++.+|..++.+++|+.|+|++|++++.+|..++. ++|+.|+|++|+++ .+|..+..++ +|+.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~ 549 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAF 549 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcE
Confidence 44666777777777666666777777777777777777666666666 66777777777776 5666666665 3554
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.72 E-value=4.8e-09 Score=113.29 Aligned_cols=76 Identities=16% Similarity=0.102 Sum_probs=39.5
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
..++.|++++|.+.+..|..+..+++|+.|+|++|.+++..|.. +.. ++|+.|+|++|++++..|..++++++|++
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 34555555555555555555555555555555555555444433 333 55555555555555555555555555443
No 46
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.72 E-value=2.1e-08 Score=92.92 Aligned_cols=134 Identities=19% Similarity=0.248 Sum_probs=76.0
Q ss_pred eeeEeecCCCcEEEEecCc-chhhhhhcccccccccCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 335 HYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~-~~~piLnalEi~~l~~~~~~t~p~~~-~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
.++.+++++|+++ .+++. ... +..++.+.+..+....++.+. ..+..|+. +.++.. ...+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~Ls~n--------------~l~~ 90 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDE--LTSLTQLYLGGNKLQSLPNGVFNKLTSLTY-LNLSTN--------------QLQS 90 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTT--CTTCSEEECCSSCCCCCCTTTTTTCTTCCE-EECCSS--------------CCCC
T ss_pred CCcEEEcCCCccC-cCChhhhcc--cccCcEEECCCCccCccChhhcCCCCCcCE-EECCCC--------------cCCc
Confidence 3566777777776 44443 233 556777777766655555431 22222322 111110 0111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
+.. ........|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|.+.+..|
T Consensus 91 ~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 91 LPN--GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCH--hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 100 00111234777888888887655556777888888888888887554444666 778888888887776655
No 47
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.71 E-value=1.3e-08 Score=91.12 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=87.2
Q ss_pred eeeEeecCCCcEE-EEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~-~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|.++ +.++..... +..++.+.+..+....+ . .+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~--l~~L~~L~l~~n~l~~~-~-------------------------------~~--- 67 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAE--FVNLEFLSLINVGLISV-S-------------------------------NL--- 67 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGG--GGGCCEEEEESSCCCCC-S-------------------------------SC---
T ss_pred cCCEEECCCCCCChhhHHHHHHh--CCCCCEEeCcCCCCCCh-h-------------------------------hh---
Confidence 4666777887776 566665444 56677777766543222 0 00
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCcc-CCCcccc-CCccEEEccCCCCCccCc---
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIP--- 488 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~-iP~~l~~-~~L~~L~Ls~N~l~G~iP--- 488 (500)
...+.++.|+|++|.+++.+|..+..+++|+.|+|++|++++. .+..+.. ++|+.|+|++|++++..+
T Consensus 68 -------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~ 140 (168)
T 2ell_A 68 -------PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRE 140 (168)
T ss_dssp -------CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHH
T ss_pred -------ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHH
Confidence 0123478899999999988888888899999999999999853 2267777 899999999999985444
Q ss_pred cccCCCCCCccC
Q 010819 489 DSLTSSSKLQLV 500 (500)
Q Consensus 489 ~~l~~l~~L~~L 500 (500)
..+..+++|+.|
T Consensus 141 ~~~~~l~~L~~L 152 (168)
T 2ell_A 141 SVFKLLPQLTYL 152 (168)
T ss_dssp HHHTTCSSCCEE
T ss_pred HHHHhCccCcEe
Confidence 378888888764
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.71 E-value=2.8e-09 Score=115.06 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=59.4
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
..++.|+|++|.+++..|..++.+++|+.|+|++|++++..|..+.. +.| .|+|++|++++..|..+..+++|+.
T Consensus 476 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~ 551 (606)
T 3t6q_A 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRT 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSE
T ss_pred CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCE
Confidence 45778888888888777888888888888888888888888877777 778 8888888888777776776666654
No 49
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.70 E-value=8.2e-09 Score=107.65 Aligned_cols=76 Identities=18% Similarity=0.247 Sum_probs=67.2
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+..|+.|+|++|++++ +| .+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 195 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 3458899999999985 44 6899999999999999999888888888 999999999999998888889999988864
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.69 E-value=1.3e-09 Score=108.11 Aligned_cols=148 Identities=20% Similarity=0.202 Sum_probs=93.5
Q ss_pred eeeeeEeecCCCcEEEEecCcchh-h--hhhcccccccccCCCCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 010819 333 SWHYVAKNLSSTELTVKLVPVVGA-A--LISGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTNWD 408 (500)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~-p--iLnalEi~~l~~~~~~t~p-~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~ 408 (500)
...++.+++++|+++.. |+..+. + ....++.+.+..+....++ ..+..+..|+. +.++. +
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-L~Ls~--------------N 183 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALST-LDLSD--------------N 183 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCE-EECCS--------------C
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCE-EECCC--------------C
Confidence 34677888888888744 544444 1 0167888888888765554 44443333332 11211 1
Q ss_pred CCceeee--cCCCCCceeeEEEEEeCCCCCCc--cCCc-ccccCCCCCeEEcccCCCCccCCC-cccc-CCccEEEccCC
Q 010819 409 AWEGITC--HPNKDETAVVISQIDLGSQGLKG--YISD-KISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 409 ~w~gv~c--~~~~~~~~~~l~~L~Ls~n~l~g--~ip~-~~~~L~~L~~L~Ls~N~l~G~iP~-~l~~-~~L~~L~Ls~N 481 (500)
...|... ..........++.|+|++|++++ .++. .+.++++|+.|+|++|++++.+|. .+.. ++|+.|+|++|
T Consensus 184 ~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 184 PELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263 (312)
T ss_dssp TTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS
T ss_pred CcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC
Confidence 1111100 00000123468899999999983 3333 346889999999999999988764 4444 89999999999
Q ss_pred CCCccCccccCCCCCCcc
Q 010819 482 QFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 482 ~l~G~iP~~l~~l~~L~~ 499 (500)
+++ .+|..+. ++|++
T Consensus 264 ~l~-~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 264 GLK-QVPKGLP--AKLSV 278 (312)
T ss_dssp CCS-SCCSSCC--SEEEE
T ss_pred ccC-hhhhhcc--CCceE
Confidence 999 8998776 55544
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.68 E-value=8.9e-09 Score=108.66 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=60.2
Q ss_pred eeeEEEEEeCCCCCCccCCcccc-cCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+..|+.|+|++|.+++.+|..+. .|++|+.|+|++|.+++. |.....++|+.|+|++|++++ +|+.+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 34688899999999988888876 789999999999999865 433223889999999999996 55568888888764
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=105.39 Aligned_cols=76 Identities=20% Similarity=0.230 Sum_probs=67.7
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+..|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|++|
T Consensus 184 l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp CSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred ccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 356899999999998 565 5899999999999999999888888888 999999999999998888889999998864
No 53
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.66 E-value=9.8e-09 Score=107.61 Aligned_cols=41 Identities=17% Similarity=0.197 Sum_probs=21.6
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChh
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE 377 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~ 377 (500)
.++.+++++|.++...+..... +..++.+.+..+....+|.
T Consensus 57 ~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 57 HLEELELNENIVSAVEPGAFNN--LFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCSCCT
T ss_pred CCCEEECCCCccCEeChhhhhC--CccCCEEECCCCcCCccCc
Confidence 4555666666665433444444 4556666665555444443
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.66 E-value=6.4e-09 Score=100.88 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=86.3
Q ss_pred eeeEeecCCCcEEEEecC-cchhhhhhcccccccccCCCCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~~~~t~p-~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
.++.+++++|++. .+++ .... +..++.+.+..+....++ ..+..+..|+. +..... ...+
T Consensus 53 ~L~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~-L~l~~n--------------~l~~ 114 (276)
T 2z62_A 53 ELQVLDLSRCEIQ-TIEDGAYQS--LSHLSTLILTGNPIQSLALGAFSGLSSLQK-LVAVET--------------NLAS 114 (276)
T ss_dssp TCSEEECTTCCCC-EECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCE-EECTTS--------------CCCC
T ss_pred CCcEEECCCCcCC-ccCHHHccC--CcCCCEEECCCCccCccChhhhcCCccccE-EECCCC--------------Cccc
Confidence 5677778888777 3443 4444 567777777777654444 23333333332 111110 0111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCc-cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCcc----EEEccCCCCCcc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV----RLDLSDNQFTGS 486 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g-~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~----~L~Ls~N~l~G~ 486 (500)
+... .......++.|+|++|.+++ .+|..+..+++|+.|+|++|++++..+..+.. ++|+ .|+|++|++++
T Consensus 115 ~~~~--~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~- 191 (276)
T 2z62_A 115 LENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF- 191 (276)
T ss_dssp STTC--CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE-
T ss_pred cCch--hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc-
Confidence 1000 01122457888888888876 46888888888888888888888766666666 6666 88888888885
Q ss_pred CccccCCCCCCcc
Q 010819 487 IPDSLTSSSKLQL 499 (500)
Q Consensus 487 iP~~l~~l~~L~~ 499 (500)
+|.......+|+.
T Consensus 192 ~~~~~~~~~~L~~ 204 (276)
T 2z62_A 192 IQPGAFKEIRLKE 204 (276)
T ss_dssp ECTTSSCSCCEEE
T ss_pred cCccccCCCcccE
Confidence 4444444445554
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.65 E-value=1.6e-08 Score=100.93 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=86.2
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhH-HHHHHHHHHhcCCCCC-CC-CCCCCCCCCCCCCCc
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDR-MG-WNGDPCAPTNWDAWE 411 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk~~l~~~~~-~~-w~~~pc~~~~~~~w~ 411 (500)
.++.+++++|+++ .+|+... ..++.+.+..+....++.+ +..+..|+. +..... .. ....+..-.. ....
T Consensus 103 ~L~~L~L~~n~l~-~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~~~~~~-l~L~ 175 (332)
T 2ft3_A 103 KLQKLYISKNHLV-EIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNC-IEMGGNPLENSGFEPGAFDG-LKLN 175 (332)
T ss_dssp TCCEEECCSSCCC-SCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCE-EECCSCCCBGGGSCTTSSCS-CCCS
T ss_pred CCCEEECCCCcCC-ccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCE-EECCCCccccCCCCcccccC-CccC
Confidence 5677788888776 5555443 4677888877776666654 344444433 111110 00 0000000000 0011
Q ss_pred eeeecCCCC-----CceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 412 GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 412 gv~c~~~~~-----~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
.+....... .....++.|+|++|.+++..+..+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|+++
T Consensus 176 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 176 YLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp CCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred EEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 111110000 00124666777777777666667777777777777777777655556666 77777777777777
Q ss_pred cCccccCCCCCCccC
Q 010819 486 SIPDSLTSSSKLQLV 500 (500)
Q Consensus 486 ~iP~~l~~l~~L~~L 500 (500)
.+|..+.++++|++|
T Consensus 255 ~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVV 269 (332)
T ss_dssp BCCTTGGGCTTCCEE
T ss_pred ecChhhhcCccCCEE
Confidence 677777777666653
No 56
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.64 E-value=9.5e-09 Score=110.45 Aligned_cols=74 Identities=18% Similarity=0.194 Sum_probs=63.3
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccC-CCcccc-CCccEEEccCCCCCccCccc---cCCCCCCcc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDS---LTSSSKLQL 499 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~i-P~~l~~-~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~ 499 (500)
.|+.|+|++|.|++ +| .++.|++|+.|+|++|++++.+ |..++. ++|+.|+|++|++++..|.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 47889999999997 77 8999999999999999999887 999999 99999999999999765532 233777776
Q ss_pred C
Q 010819 500 V 500 (500)
Q Consensus 500 L 500 (500)
|
T Consensus 565 L 565 (567)
T 1dce_A 565 I 565 (567)
T ss_dssp E
T ss_pred c
Confidence 4
No 57
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.63 E-value=3.5e-08 Score=106.43 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=60.7
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCc-cCCCcccc-CCccEEEccCCCCCccCccccCCCCCCc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G-~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 498 (500)
..|+.|+|++|++++..+..|++|++|++|+|++|.+++ .+|..++. ++|+.|+|++|++++..|..+..+.+++
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 347889999999987666678999999999999999875 56777787 8999999999999987777776555443
No 58
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.63 E-value=9.5e-09 Score=107.70 Aligned_cols=131 Identities=18% Similarity=0.171 Sum_probs=66.8
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~-p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|+++...+..... +..++.+.+..+....+ |..+..+..|+. +.+... .-..-|. . .+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~-L~L~~n-~l~~~~~---~--~~--- 100 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRT-LGLRSN-RLKLIPL---G--VF--- 100 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECCSS-CCCSCCT---T--SS---
T ss_pred CCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhhhCCccCCE-EECCCC-cCCccCc---c--cc---
Confidence 4677889999998544455555 77889999988875544 555555555544 222211 0011110 0 00
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
..+..|+.|+|++|.+.+..|..+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|+++
T Consensus 101 -------~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 101 -------TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp -------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS
T ss_pred -------cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc
Confidence 01122444555555554444444445555555555555544444444444 44444444444444
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.63 E-value=6.3e-09 Score=110.27 Aligned_cols=67 Identities=27% Similarity=0.331 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCCCc--cCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCcccc
Q 010819 425 VISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g--~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
.++.|+|++|++++ .+|..++.+++|+.|+|++|.+++.+|.. +.. ++|+.|+|++|++++.+|..+
T Consensus 349 ~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 419 (520)
T 2z7x_B 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419 (520)
T ss_dssp SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC
T ss_pred CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh
Confidence 45566666666654 44555666666666666666666555554 333 566666666666666665554
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.63 E-value=4.5e-08 Score=105.57 Aligned_cols=145 Identities=18% Similarity=0.140 Sum_probs=95.1
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~-p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|+++...+..... +..++.+.+..+....+ |..+..+..|+. +.++.. ...++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~-L~Ls~n--------------~l~~~ 95 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSN--FSELQWLDLSRCEIETIEDKAWHGLHHLSN-LILTGN--------------PIQSF 95 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTCCCCEECTTTTTTCTTCCE-EECTTC--------------CCCCC
T ss_pred CcCEEECCCCCcCEeChhhccC--CccCcEEeCCCCcccccCHHHhhchhhcCE-eECCCC--------------ccccc
Confidence 4667788888887444445555 66788888877765544 333444444433 222110 11111
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCc-cCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G-~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
.. .....+..|+.|+|++|.+++..+..++++++|++|+|++|.+++ .+|..++. ++|+.|+|++|++++..|..+
T Consensus 96 ~p--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 96 SP--GSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp CT--TSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred Ch--hhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 00 111123457888999999887777788899999999999998876 67888888 889999999999888777777
Q ss_pred CCCCCCc
Q 010819 492 TSSSKLQ 498 (500)
Q Consensus 492 ~~l~~L~ 498 (500)
+.+++|+
T Consensus 174 ~~l~~L~ 180 (606)
T 3vq2_A 174 QFLRENP 180 (606)
T ss_dssp HHHHHCT
T ss_pred hhhhccc
Confidence 6665553
No 61
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.62 E-value=1.3e-08 Score=101.29 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=45.1
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
.++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|..+.. ++|+.|+|++|++++.-+..+
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 4667777777777666666777777777777777777 67776666 777777777777774333333
No 62
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.62 E-value=4.4e-08 Score=101.75 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=83.5
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~-p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.+..+++++|++...++...+. +..++.+.+..+....+ |..+..+..|+. +.++. +...++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~--------------N~l~~~ 338 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSH--FTDLEQLTLAQNEINKIDDNAFWGLTHLLK-LNLSQ--------------NFLGSI 338 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCE-EECCS--------------SCCCEE
T ss_pred CceEEEecCccccccchhhccc--CCCCCEEECCCCcccccChhHhcCcccCCE-EECCC--------------CccCCc
Confidence 4666777778777655555555 66777777777664433 333333333322 11111 011111
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
... .......|+.|+|++|.+++..|..+..+++|++|+|++|++++..+..+.. ++|+.|+|++|++++.+|
T Consensus 339 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 DSR--MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CGG--GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred Chh--HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 110 0011234778888888888777888888888888888888888544444566 888888888888888877
No 63
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.62 E-value=1.1e-08 Score=109.45 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=59.0
Q ss_pred eeEEEEEeCCCCCC-ccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|+|++|.+. +.+|..+..+++|+.|+|++|++++..|..++. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 523 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEE
Confidence 45777888888876 567777888888888888888888777777777 788888888888887666667777777653
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=1.5e-08 Score=98.24 Aligned_cols=75 Identities=21% Similarity=0.314 Sum_probs=43.7
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCC----eEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLV----NLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~----~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
.++.|+|++|++++..+..+..+.+|+ .|++++|.+++..+..+...+|+.|+|++|++++..+..+.++++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 366677777777665555666555555 666677766643333222256667777777666433334556666654
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.60 E-value=1.1e-08 Score=113.22 Aligned_cols=66 Identities=17% Similarity=0.098 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc--CCccEEEccCCCCCccCccccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
|+.|+|++|.|+ .||.+|++|++|+.|+|++|.|+|.+|..+.. ..+..|+|++|.++|.+|.++.
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~ 362 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERR 362 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--
T ss_pred CCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccc
Confidence 444555555544 44444555555555555555555554444433 2222344555555555554443
No 66
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.60 E-value=2.1e-08 Score=98.40 Aligned_cols=70 Identities=24% Similarity=0.406 Sum_probs=48.2
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.+++. +.++.+++|+.|+|++|++++..| +.. ++|+.|+|++|++++ +|. +.++++|+.|
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~~-l~~l~~L~~L 205 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LRA-LAGLKNLDVL 205 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CGG-GTTCTTCSEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Chh-hccCCCCCEE
Confidence 467777777777754 567777777777777777775433 555 777777777777773 553 6677766653
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.59 E-value=3.1e-08 Score=98.05 Aligned_cols=145 Identities=20% Similarity=0.229 Sum_probs=93.9
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCC-C--ChhHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-T--VPEQV--IAMRALKESLRVPDRMGWNGDPCAPTNWD 408 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~-t--~p~~~--~~l~~lk~~l~~~~~~~w~~~pc~~~~~~ 408 (500)
..++.+++++|++....+...+. +..++.+.+..|... . ++..+ ..+..|+. +.+.. +
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~-L~L~~--------------N 211 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRV--FPALSTLDLSDNPELGERGLISALCPLKFPTLQV-LALRN--------------A 211 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCC--CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCE-EECTT--------------S
T ss_pred CCCcEEEeeCCCCccchHHHhcc--CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCE-EECCC--------------C
Confidence 35778888889887444455555 778888888877632 1 11111 11111111 11100 1
Q ss_pred CCceee--ecCCCCCceeeEEEEEeCCCCCCccCC-cccccCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCc
Q 010819 409 AWEGIT--CHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485 (500)
Q Consensus 409 ~w~gv~--c~~~~~~~~~~l~~L~Ls~n~l~g~ip-~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G 485 (500)
...++. +.. -......++.|+|++|.+++.+| +.+..+++|+.|+|++|+++ .+|..+. ++|+.|+|++|++++
T Consensus 212 ~l~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 212 GMETPSGVCSA-LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-AKLSVLDLSYNRLDR 288 (312)
T ss_dssp CCCCHHHHHHH-HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-SEEEEEECCSSCCCS
T ss_pred cCcchHHHHHH-HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-CCceEEECCCCCCCC
Confidence 121110 000 00011358899999999998885 56778999999999999999 8998777 899999999999996
Q ss_pred cCccccCCCCCCccC
Q 010819 486 SIPDSLTSSSKLQLV 500 (500)
Q Consensus 486 ~iP~~l~~l~~L~~L 500 (500)
. |. +.++++|++|
T Consensus 289 ~-p~-~~~l~~L~~L 301 (312)
T 1wwl_A 289 N-PS-PDELPQVGNL 301 (312)
T ss_dssp C-CC-TTTSCEEEEE
T ss_pred C-hh-HhhCCCCCEE
Confidence 5 76 8888888764
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.59 E-value=3.7e-08 Score=102.34 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred ceeeecCCCCCc----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC-cccc-CCccEEEccCCCCC
Q 010819 411 EGITCHPNKDET----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 411 ~gv~c~~~~~~~----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~-~l~~-~~L~~L~Ls~N~l~ 484 (500)
..+.|...+... +..++.|+|++|.+++..|..++++++|++|+|++|.+.+.+|+ .+.. ++|++|+|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 13 YNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp TEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred cccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC
Confidence 347776543221 23578899999999888788888888888888888888877754 4666 88888888888888
Q ss_pred ccCccccCCCCCCccC
Q 010819 485 GSIPDSLTSSSKLQLV 500 (500)
Q Consensus 485 G~iP~~l~~l~~L~~L 500 (500)
+..|..++++++|++|
T Consensus 93 ~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 93 QLETGAFNGLANLEVL 108 (455)
T ss_dssp EECTTTTTTCTTCCEE
T ss_pred ccChhhccCcccCCEE
Confidence 7778888888888764
No 69
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.59 E-value=1.4e-08 Score=112.32 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=79.7
Q ss_pred hhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCc
Q 010819 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG 438 (500)
Q Consensus 359 LnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g 438 (500)
+..++.+.+..+....+|..+..+..|+. +.++. + ....+ +.....+..|+.|+|++|.|+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~-L~Ls~----N----------~l~~l---p~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIFKYDFLTR-LYLNG----N----------SLTEL---PAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGGGCCSCSC-CBCTT----S----------CCSCC---CGGGGGGTTCCEEECTTSCCS-
T ss_pred CCCCcEEECCCCCCCCCChhhcCCCCCCE-EEeeC----C----------cCccc---ChhhhCCCCCCEEeCcCCcCC-
Confidence 55677777777766677766554433322 11111 0 01100 011112345888999999999
Q ss_pred cCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCC
Q 010819 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 439 ~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
.||.+|++|++|++|+|++|.|+ .||..++. ++|+.|+|++|+|+|.+|..+..
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 88999999999999999999997 88988888 99999999999999988876643
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=3.4e-08 Score=106.83 Aligned_cols=58 Identities=22% Similarity=0.233 Sum_probs=40.1
Q ss_pred cccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 442 ~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+.++.+++|+.|+|++|.+++.+|..++. ++|+.|+|++|++++ +|..+..+++|+.|
T Consensus 248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 34666677777777777777777777766 777777777777774 56666666666653
No 71
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.57 E-value=5.4e-08 Score=105.24 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=67.5
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+.|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++ +|..+.. ++|+.|+|++|+++ .+|..++.+++|+.|
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L 329 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 329 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEE
Confidence 458899999999999999999999999999999999996 6777777 99999999999999 799888888888764
No 72
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.57 E-value=3.9e-08 Score=104.68 Aligned_cols=76 Identities=21% Similarity=0.219 Sum_probs=54.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.++.|+|++|.+++..|..+.++++|++|+|++|++++..|..++. ++|++|+|++|++++..|..++++++|++|
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 4677777777777666777777777777777777777666666666 777777777777776555556777666653
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.56 E-value=4.4e-08 Score=96.75 Aligned_cols=72 Identities=29% Similarity=0.380 Sum_probs=57.0
Q ss_pred eeEEEEEeCCCCCCccCCcccccC---CCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLL---SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L---~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
..++.|+|++|.+++.+|+.+..+ ++|++|+|++|+++ .+|..+. ++|+.|+|++|++++ +|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNR-APQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCS-CCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCC-Cch-hhhCCCccE
Confidence 347889999999998888888877 58999999999998 7887665 789999999999996 333 455566654
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.56 E-value=7.3e-09 Score=111.06 Aligned_cols=73 Identities=26% Similarity=0.439 Sum_probs=60.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccc-cCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L 500 (500)
..++.|+|++|++++.+|..+. ++|+.|+|++|+++ .||+.+.. ++|+.|+|++|+++ .+|.. +..+++|+.|
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYI 502 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCE
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEE
Confidence 3478888888888887776655 78899999999998 78888878 89999999999999 68876 8888888754
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.56 E-value=2.7e-08 Score=105.89 Aligned_cols=147 Identities=15% Similarity=0.141 Sum_probs=80.7
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
..++.+++++|+++...+...+. +..++.+.+..+....++.+ +..+..|+. +.+... ...+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~n--------------~l~~ 112 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYS--LGSLEHLDLSDNHLSSLSSSWFGPLSSLKY-LNLMGN--------------PYQT 112 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTT--CTTCCEEECTTSCCCSCCHHHHTTCTTCCE-EECTTC--------------CCSS
T ss_pred CcccEEECCCCCcCccChhhccc--cccCCEEECCCCccCccCHHHhccCCCCcE-EECCCC--------------cccc
Confidence 35677778888777544445555 66778888877775555543 444444432 212110 0110
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCC-cccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip-~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~ 490 (500)
+.- +........++.|++++|.+.+.+| ..+.++++|++|+|++|++++.+|..++. ++|+.|++++|.+. .+|+.
T Consensus 113 ~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~ 190 (549)
T 2z81_A 113 LGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEI 190 (549)
T ss_dssp SCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHH
T ss_pred cch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchh
Confidence 000 0001112346667777776444554 45667777777777777777666766666 66777777776664 44543
Q ss_pred c-CCCCCCcc
Q 010819 491 L-TSSSKLQL 499 (500)
Q Consensus 491 l-~~l~~L~~ 499 (500)
+ ..+++|+.
T Consensus 191 ~~~~l~~L~~ 200 (549)
T 2z81_A 191 FADILSSVRY 200 (549)
T ss_dssp HHHSTTTBSE
T ss_pred hHhhcccccE
Confidence 2 34555544
No 76
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.55 E-value=3.4e-08 Score=86.39 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=64.9
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc-cCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G-~iP~~l~~l~~L~~L 500 (500)
...++.|++++|.+++. ..++.+++|+.|+|++|.+++.+|..+.. ++|+.|+|++|++++ ..|..++++++|++|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 35688999999999866 78899999999999999999888888776 999999999999986 245788888888764
No 77
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.55 E-value=1.5e-08 Score=114.12 Aligned_cols=147 Identities=13% Similarity=0.121 Sum_probs=94.5
Q ss_pred eeeeeEeecCCCcEEEEecC-cchhhhhhcccccccccCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 333 SWHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~-~~~~piLnalEi~~l~~~~~~t~-p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
...++++++++|.+.+.+++ .... +..++.+.+..+....+ |..+..+..|+. +.+.. +..
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~--L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~-L~Ls~--------------n~l 109 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRN--LPNLRILDLGSSKIYFLHPDAFQGLFHLFE-LRLYF--------------CGL 109 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSS--CTTCCEEECTTCCCCEECTTSSCSCSSCCC-EECTT--------------CCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcC--CCCCCEEECCCCcCcccCHhHccCCcccCE-eeCcC--------------CCC
Confidence 34677788887766667744 3454 66788888877764433 544444444433 22211 011
Q ss_pred ceeeecCCCCCceeeEEEEEeCCCCCCccCC-cccccCCCCCeEEcccCCCCccCCCcccc---CCccEEEccCCCCCcc
Q 010819 411 EGITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGS 486 (500)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip-~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~---~~L~~L~Ls~N~l~G~ 486 (500)
.+..........+..|+.|+|++|.+++..+ +.+++|++|+.|+|++|.+++..|..+.. ++|+.|+|++|.+.+.
T Consensus 110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~ 189 (844)
T 3j0a_A 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR 189 (844)
T ss_dssp SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence 1100000011223458888888888887654 57888888888888888888888887765 6788888888888888
Q ss_pred CccccCCCCC
Q 010819 487 IPDSLTSSSK 496 (500)
Q Consensus 487 iP~~l~~l~~ 496 (500)
+|..++++++
T Consensus 190 ~~~~~~~~~~ 199 (844)
T 3j0a_A 190 VSVDWGKCMN 199 (844)
T ss_dssp CCCCCCSSSC
T ss_pred cccchhhcCC
Confidence 8887776654
No 78
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.54 E-value=9.3e-08 Score=96.67 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=84.3
Q ss_pred eeEeecCCCcEEEEecCc-ch-hhhhhcccccccccCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 336 YVAKNLSSTELTVKLVPV-VG-AALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 336 l~~l~l~~n~L~~~l~~~-~~-~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
++.+++++|+|+ .+++. .. . +..++.+.+..|.+..++.+ +..+..|+. +.++. + ...+
T Consensus 41 l~~L~Ls~N~l~-~l~~~~~~~~--l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~-L~Ls~----N----------~l~~ 102 (361)
T 2xot_A 41 TALLDLSHNNLS-RLRAEWTPTR--LTNLHSLLLSHNHLNFISSEAFVPVPNLRY-LDLSS----N----------HLHT 102 (361)
T ss_dssp CSEEECCSSCCC-EECTTSSSSC--CTTCCEEECCSSCCCEECTTTTTTCTTCCE-EECCS----S----------CCCE
T ss_pred CCEEECCCCCCC-ccChhhhhhc--ccccCEEECCCCcCCccChhhccCCCCCCE-EECCC----C----------cCCc
Confidence 455677777776 34433 22 2 56677777777665555432 333333322 11111 0 1111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcc----cc-CCccEEEccCCCCCccC
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL----GQ-QSLVRLDLSDNQFTGSI 487 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l----~~-~~L~~L~Ls~N~l~G~i 487 (500)
+... ....+..|+.|+|++|.+++..|..|..|++|+.|+|++|+|+ .+|..+ .. ++|+.|+|++|+|++-.
T Consensus 103 ~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 103 LDEF--LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp ECTT--TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCHH--HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 1110 0112245788999999999888888999999999999999998 466654 44 88999999999998433
Q ss_pred ccccCCCCC
Q 010819 488 PDSLTSSSK 496 (500)
Q Consensus 488 P~~l~~l~~ 496 (500)
+..+..+++
T Consensus 180 ~~~~~~l~~ 188 (361)
T 2xot_A 180 LTDLQKLPA 188 (361)
T ss_dssp HHHHHHSCH
T ss_pred HHHhhhccH
Confidence 345555543
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.54 E-value=9.2e-08 Score=86.27 Aligned_cols=62 Identities=23% Similarity=0.248 Sum_probs=28.7
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI 487 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~i 487 (500)
|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|.+++..
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 444555555555433334445555555555555554222222233 44555555555554443
No 80
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.53 E-value=1.1e-07 Score=96.18 Aligned_cols=100 Identities=21% Similarity=0.197 Sum_probs=48.6
Q ss_pred CCCCCCCCCCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccc-cCCCCCeEEcccCCCCccCCCcccc-CC
Q 010819 400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QS 472 (500)
Q Consensus 400 ~pc~~~~~~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~-~~ 472 (500)
..|.....|.+..+.|....... ...++.|+|++|++++..+..+. ++++|+.|+|++|++++..|..+.. ++
T Consensus 10 ~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~ 89 (361)
T 2xot_A 10 VSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89 (361)
T ss_dssp TTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred CCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCC
Confidence 44543333566667775433211 11244566666665544444444 5555555555555555444444444 55
Q ss_pred ccEEEccCCCCCccCccccCCCCCCcc
Q 010819 473 LVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 473 L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
|+.|+|++|+|++..+..+.++++|++
T Consensus 90 L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 90 LRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 555555555555333334444444443
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.53 E-value=8.7e-08 Score=97.66 Aligned_cols=51 Identities=16% Similarity=0.190 Sum_probs=32.7
Q ss_pred eeeeEeecCCCcEEEEecCcc-hhhhhhcccccccccCCCCCChh-HHHHHHHHHH
Q 010819 334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPE-QVIAMRALKE 387 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~-~~piLnalEi~~l~~~~~~t~p~-~~~~l~~lk~ 387 (500)
..+..+++++|+++ .+++.. .. +..++.+.+..+....++. .+..+..|+.
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred CCCCEEECCCCccC-cCCHHHhcC--CCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 35778888888887 666653 44 6678888888777554443 3444444543
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.51 E-value=1.7e-08 Score=110.46 Aligned_cols=75 Identities=28% Similarity=0.322 Sum_probs=57.6
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccc--c-CCccEEEccCCCCCccCccccCCCCCCc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~--~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~ 498 (500)
..|+.|+|++|.+++..|..++++++|++|+|++|.+++..|..+. . ++|+.|+|++|++++..|..+..+++|+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 4578888888888888788888888888888888888876665543 2 7788888888888877777766665543
No 83
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.51 E-value=5.4e-08 Score=94.01 Aligned_cols=56 Identities=23% Similarity=0.398 Sum_probs=28.4
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
|+.|+|++|++++. + .++.+++|+.|+|++|++++. +.+.. ++|+.|+|++|.+++
T Consensus 130 L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 130 LEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 45555555555532 2 455555555555555555543 33444 555555555555543
No 84
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.51 E-value=4.9e-08 Score=98.18 Aligned_cols=168 Identities=15% Similarity=0.146 Sum_probs=103.8
Q ss_pred EEEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhH-HHHHHHHH
Q 010819 308 FDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALK 386 (500)
Q Consensus 308 F~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~-~~~l~~lk 386 (500)
-.+.+.++.+...+. ........++.+++++|+++...+..... +..++.+.+..+....++.+ +..+.+|+
T Consensus 55 ~~L~l~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 55 KSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp CEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cEEECCCCcCcccCH-----HHhccCCCCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 345555655544331 11122335777888888888544444555 67788888888877777765 44444443
Q ss_pred HhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCC-CCccCCcccccCCCCCeEEcccCCCCccCC
Q 010819 387 ESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQG-LKGYISDKISLLSNLVNLNLSTNSLGGTLP 465 (500)
Q Consensus 387 ~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~-l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP 465 (500)
. +.+... ...++.- .........++.|++++|. +.+..+..+.++++|+.|++++|.+++..|
T Consensus 128 ~-L~L~~n--------------~l~~l~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 128 F-LNLLGN--------------PYKTLGE-TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp E-EECTTC--------------CCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred E-EECCCC--------------CCcccCc-hhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 3 222110 0111000 0001123457888998884 665556788889999999999999988888
Q ss_pred Ccccc-CCccEEEccCCCCCccCccc-cCCCCCCcc
Q 010819 466 SGLGQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQL 499 (500)
Q Consensus 466 ~~l~~-~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~ 499 (500)
..+.. ++|+.|+|++|+++ .+|.. +..+++|+.
T Consensus 192 ~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~ 226 (353)
T 2z80_A 192 KSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVEC 226 (353)
T ss_dssp TTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEE
T ss_pred HHHhccccCCeecCCCCccc-cchhhhhhhcccccE
Confidence 88888 88999999999886 56654 334566654
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.50 E-value=1.5e-08 Score=108.30 Aligned_cols=77 Identities=26% Similarity=0.297 Sum_probs=71.7
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCC-ccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~-G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|++++|.+.+.+|..+..+++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++..|..+.++++|++|
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 45889999999999999999999999999999999998 789999988 999999999999999889999999999865
No 86
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.50 E-value=4.5e-08 Score=103.59 Aligned_cols=144 Identities=21% Similarity=0.311 Sum_probs=101.8
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCCh---hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP---EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p---~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..+..+++++|+++..++...+. +..++.+.+..+....++ ..+..+..|+. +.++. + ..
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~-L~Ls~----N----------~l 386 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQ-LDISQ----N----------SV 386 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE-EECCS----S----------CC
T ss_pred CcccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCE-EECCC----C----------cC
Confidence 45778889999888656666655 678888999888765443 33333333322 22211 0 11
Q ss_pred ce-eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc
Q 010819 411 EG-ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (500)
Q Consensus 411 ~g-v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP 488 (500)
.+ +... .......++.|+|++|.+++.+|..+. ++|+.|+|++|+++ .+|..+.. ++|+.|+|++|+++ .+|
T Consensus 387 ~~~l~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 460 (520)
T 2z7x_B 387 SYDEKKG--DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460 (520)
T ss_dssp BCCGGGC--SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred Ccccccc--hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence 11 1100 001124588999999999998888775 79999999999999 89998888 99999999999999 788
Q ss_pred cc-cCCCCCCccC
Q 010819 489 DS-LTSSSKLQLV 500 (500)
Q Consensus 489 ~~-l~~l~~L~~L 500 (500)
.. +.++++|++|
T Consensus 461 ~~~~~~l~~L~~L 473 (520)
T 2z7x_B 461 DGIFDRLTSLQKI 473 (520)
T ss_dssp TTTTTTCTTCCEE
T ss_pred HHHhccCCcccEE
Confidence 86 8888888764
No 87
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.49 E-value=5.2e-08 Score=87.08 Aligned_cols=76 Identities=26% Similarity=0.318 Sum_probs=65.8
Q ss_pred ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCc--cccCCCCCCc
Q 010819 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKLQ 498 (500)
Q Consensus 422 ~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP--~~l~~l~~L~ 498 (500)
....|+.|+|++|.+++. ..+..+++|+.|+|++|++++.+|..+.. ++|+.|+|++|++++ +| ..+..+++|+
T Consensus 47 ~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECLK 123 (168)
T ss_dssp GGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCCC
T ss_pred hCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCCC
Confidence 345689999999999865 88999999999999999999888888776 999999999999985 44 6888999888
Q ss_pred cC
Q 010819 499 LV 500 (500)
Q Consensus 499 ~L 500 (500)
+|
T Consensus 124 ~L 125 (168)
T 2ell_A 124 SL 125 (168)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.49 E-value=3.9e-08 Score=110.69 Aligned_cols=142 Identities=20% Similarity=0.197 Sum_probs=92.6
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCC-CChhH--HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQ--VIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~-t~p~~--~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..++.+++++|.+....|...+. +..+|.+.+..+... ..|.+ +..+..|+. +.++. +..
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~-L~Ls~--------------N~l 135 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPDAFQG--LFHLFELRLYFCGLSDAVLKDGYFRNLKALTR-LDLSK--------------NQI 135 (844)
T ss_dssp TTCCEEECTTCCCCEECTTSSCS--CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE-EEEES--------------CCC
T ss_pred CCCCEEECCCCcCcccCHhHccC--CcccCEeeCcCCCCCcccccCccccccCCCCE-EECCC--------------Ccc
Confidence 35778888888888665666666 777888888877633 34433 333333322 11111 011
Q ss_pred ceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccC--CCCCeEEcccCCCCccCCCcccc-CC------ccEEEccCC
Q 010819 411 EGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLL--SNLVNLNLSTNSLGGTLPSGLGQ-QS------LVRLDLSDN 481 (500)
Q Consensus 411 ~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L--~~L~~L~Ls~N~l~G~iP~~l~~-~~------L~~L~Ls~N 481 (500)
.++... .....+..|+.|+|++|.+++..+..+..+ ++|+.|+|++|.+.+.+|..++. .+ |+.|+|++|
T Consensus 136 ~~~~~~-~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 136 RSLYLH-PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCCCC-GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred cccccc-hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 111100 001223457888888888888888888887 88888999999888888877665 44 888999888
Q ss_pred CCCccCccccCC
Q 010819 482 QFTGSIPDSLTS 493 (500)
Q Consensus 482 ~l~G~iP~~l~~ 493 (500)
++++.+|..+..
T Consensus 215 ~l~~~~~~~~~~ 226 (844)
T 3j0a_A 215 GWTVDITGNFSN 226 (844)
T ss_dssp CSSTTTTSGGGG
T ss_pred cCchhHHHHHHh
Confidence 888888876654
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.49 E-value=3.9e-08 Score=106.44 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=31.3
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
.|+.|+|++|.+++..| +..|++|+.|+|++|++++ +| .+.. ++|+.|+|++|++++
T Consensus 154 ~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 154 KLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEEC
T ss_pred CCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCcC
Confidence 35556666666554433 5555666666666666553 22 3444 556666666665554
No 90
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.48 E-value=1.3e-07 Score=101.96 Aligned_cols=78 Identities=26% Similarity=0.181 Sum_probs=70.4
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCC-CCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS-SKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l-~~L~~L 500 (500)
...++.|+|++|+|++.+|..|.+|++|+.|+|++|++++..|..+.. ++|++|+|++|++++..|..+.++ ++|++|
T Consensus 493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L 572 (635)
T 4g8a_A 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence 456899999999999999999999999999999999999887878888 999999999999999999999887 578754
No 91
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.46 E-value=2e-07 Score=101.93 Aligned_cols=147 Identities=21% Similarity=0.229 Sum_probs=101.8
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~-p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
.++.+++++|.++...+..... +..++.+.+..+....+ |..+..+..|+. +.++.. ...++
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~L~~n--------------~l~~l 88 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKV-LNLQHN--------------ELSQL 88 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHCTTCCE-EECCSS--------------CCCCC
T ss_pred CCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcccCcCE-EECCCC--------------ccCcc
Confidence 5677888888887433334555 67788888887774444 555566655544 222210 11111
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccC
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
.. .....+..|+.|+|++|.+++..|..|++|++|++|+|++|.+++..|..++. ++|+.|+|++|++++..|..+.
T Consensus 89 ~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 89 SD--KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp CT--TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred Ch--hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 10 00112345889999999999777788999999999999999999988888888 9999999999999987776543
Q ss_pred --CCCCCccC
Q 010819 493 --SSSKLQLV 500 (500)
Q Consensus 493 --~l~~L~~L 500 (500)
++++|++|
T Consensus 167 ~~~~~~L~~L 176 (680)
T 1ziw_A 167 IFANSSLKKL 176 (680)
T ss_dssp GGTTCEESEE
T ss_pred ccccccccEE
Confidence 44666543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.45 E-value=6.6e-08 Score=95.57 Aligned_cols=136 Identities=17% Similarity=0.324 Sum_probs=88.2
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~ 414 (500)
.++.+++++|+++ .++ .... +..++.+.+..+....++. +..+..|+. +.+.. +...++.
T Consensus 86 ~L~~L~L~~n~l~-~~~-~~~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~-L~l~~--------------n~l~~~~ 145 (308)
T 1h6u_A 86 KITELELSGNPLK-NVS-AIAG--LQSIKTLDLTSTQITDVTP-LAGLSNLQV-LYLDL--------------NQITNIS 145 (308)
T ss_dssp SCCEEECCSCCCS-CCG-GGTT--CTTCCEEECTTSCCCCCGG-GTTCTTCCE-EECCS--------------SCCCCCG
T ss_pred CCCEEEccCCcCC-Cch-hhcC--CCCCCEEECCCCCCCCchh-hcCCCCCCE-EECCC--------------CccCcCc
Confidence 5677777877765 232 2333 5677777887776655553 333333322 11111 1111111
Q ss_pred ecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCC
Q 010819 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
. ...+..|+.|+|++|.+++ +++ +..+++|+.|+|++|++++ +|+ +.. ++|+.|+|++|++++. | .+.+
T Consensus 146 ~----l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~-~-~l~~ 215 (308)
T 1h6u_A 146 P----LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLAN 215 (308)
T ss_dssp G----GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGTT
T ss_pred c----ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc-c-cccC
Confidence 1 1123458899999999985 444 8999999999999999985 443 666 9999999999999954 4 3788
Q ss_pred CCCCccC
Q 010819 494 SSKLQLV 500 (500)
Q Consensus 494 l~~L~~L 500 (500)
+++|+.|
T Consensus 216 l~~L~~L 222 (308)
T 1h6u_A 216 TSNLFIV 222 (308)
T ss_dssp CTTCCEE
T ss_pred CCCCCEE
Confidence 8888764
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.45 E-value=2e-08 Score=105.92 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=108.1
Q ss_pred eEEEEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHH
Q 010819 306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL 385 (500)
Q Consensus 306 R~F~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~l 385 (500)
++-.+.+.++.+.+.++ ..+ .....+..+++++|.+++..+ .+. +..++.+.+..|....++.. ..|
T Consensus 35 ~L~~L~Ls~n~l~~~~~----~~~-~~l~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISA----ADL-APFTKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCG----GGG-TTCTTCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEEC----TTC
T ss_pred CccEEEeeCCcCCCCCH----HHH-hCCCCCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCCC----CCc
Confidence 34455666665544321 111 122356777888888875544 444 66777777777765444422 111
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCC
Q 010819 386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP 465 (500)
Q Consensus 386 k~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP 465 (500)
+. +.+.. +.+.++.|.. ...++.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|
T Consensus 102 ~~-L~L~~--------------N~l~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 102 ET-LHAAN--------------NNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp CE-EECCS--------------SCCCCEEECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred CE-EECcC--------------CcCCCCCccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 11 11111 3456666642 2458999999999999999999999999999999999999999
Q ss_pred Cccc-c-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 466 SGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 466 ~~l~-~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..+. . ++|+.|+|++|.+++. |. +..+++|+.|
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred HHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 8887 4 9999999999999965 43 4457777654
No 94
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.43 E-value=1.3e-08 Score=101.12 Aligned_cols=74 Identities=23% Similarity=0.352 Sum_probs=63.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC-ccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT-GSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~-G~iP~~l~~l~~L~~ 499 (500)
..++.|+|++|.+++ +|+.+..+++|+.|+|++|+++ .+|+.+.. ++|+.|+|++|.+. +.+|..+.++++|+.
T Consensus 191 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 191 AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp TTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred ccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 458899999999984 6677999999999999999999 68888888 99999999999998 778888877776654
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.42 E-value=8.9e-08 Score=94.65 Aligned_cols=124 Identities=18% Similarity=0.308 Sum_probs=81.8
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
..+..+++++|+++. +++ ... +..++.+.+..+....++. +..+..|+. +.+.. +...++
T Consensus 107 ~~L~~L~l~~n~l~~-~~~-l~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~-L~l~~--------------n~l~~~ 166 (308)
T 1h6u_A 107 QSIKTLDLTSTQITD-VTP-LAG--LSNLQVLYLDLNQITNISP-LAGLTNLQY-LSIGN--------------AQVSDL 166 (308)
T ss_dssp TTCCEEECTTSCCCC-CGG-GTT--CTTCCEEECCSSCCCCCGG-GGGCTTCCE-EECCS--------------SCCCCC
T ss_pred CCCCEEECCCCCCCC-chh-hcC--CCCCCEEECCCCccCcCcc-ccCCCCccE-EEccC--------------CcCCCC
Confidence 357788888888873 443 333 6778888888887666664 333333322 11111 111111
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
.. ...+..|+.|+|++|.+++..+ +..+++|+.|+|++|++++..| +.. ++|+.|+|++|++++
T Consensus 167 ~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 167 TP----LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred hh----hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 11 1123458899999999985433 8899999999999999986543 666 999999999999985
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.40 E-value=4.4e-08 Score=92.86 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=44.3
Q ss_pred eeEE-EEEeCCCCCCccCCcccccCCCCCeEEcccCC-CCccCCCcccc--CCccEEEccCCCCCccCccc
Q 010819 424 VVIS-QIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDS 490 (500)
Q Consensus 424 ~~l~-~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~--~~L~~L~Ls~N~l~G~iP~~ 490 (500)
..++ .|++++|+++ .+|......++|+.|+|++|. +++..+..+.. ++|+.|+|++|+++ .+|..
T Consensus 155 ~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~ 223 (239)
T 2xwt_C 155 CNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK 223 (239)
T ss_dssp BSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT
T ss_pred hcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh
Confidence 4567 7888888887 666655445778888888884 77433444443 57888888888887 45553
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.40 E-value=1.2e-07 Score=87.12 Aligned_cols=75 Identities=17% Similarity=0.210 Sum_probs=59.7
Q ss_pred eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+..++.|+|++|.+++..|..++.+++|+.|+|++|.+.+.+| .+.. ++|+.|+|++|++++ ++ .+.++++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEE
Confidence 3458888999999988888888889999999999998555676 5666 889999999998885 55 67778877754
No 98
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.39 E-value=1.2e-07 Score=94.11 Aligned_cols=76 Identities=18% Similarity=0.183 Sum_probs=62.4
Q ss_pred eeeEEEEEeCCCCCCccCCcccc-cCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip~~~~-~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
...++.|+|++|.+++..+..+. .+++|+.|+|++|.+++. |.....++|+.|+|++|++++ +|+.+..+++|++|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 219 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccccccccCCEEECCCCcCCc-chhhhcccCcccEE
Confidence 35699999999999988777774 799999999999999854 443333899999999999994 66678888888764
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.39 E-value=1.3e-07 Score=101.56 Aligned_cols=64 Identities=16% Similarity=0.330 Sum_probs=42.0
Q ss_pred EEEEEeCCCCCCccCCcccccCCCC-------CeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNL-------VNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS 494 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L-------~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l 494 (500)
|+.|+|++|+|+ .+|. +.. +| +.|+|++|+++ .||..+.. ++|+.|+|++|+|+|.+|..+.++
T Consensus 182 L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 182 LEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 666777777776 5665 443 55 77777777777 57776666 777777777777777777665544
No 100
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.39 E-value=2.5e-07 Score=93.01 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.++.|+|++|++++..+..+.++++|+.|+|++|++++..|..++. ++|+.|+|++|++++..+..++++++|++|
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 5778888888888655557888888888888888888766777777 788888888888874333336777777654
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.39 E-value=1.3e-07 Score=102.34 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=96.0
Q ss_pred eeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
...+..+++++|+|. .+++ ... +..|+.+.+..+....+| .+..|..|+. +.+.. +...+
T Consensus 64 l~~L~~L~Ls~N~l~-~~~~-l~~--l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~-L~Ls~--------------N~l~~ 123 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLT-DIKP-LTN--LKNLGWLFLDENKIKDLS-SLKDLKKLKS-LSLEH--------------NGISD 123 (605)
T ss_dssp CTTCCEEECTTSCCC-CCGG-GGG--CTTCCEEECCSSCCCCCT-TSTTCTTCCE-EECTT--------------SCCCC
T ss_pred CCCCCEEEeeCCCCC-CChh-hcc--CCCCCEEECcCCCCCCCh-hhccCCCCCE-EEecC--------------CCCCC
Confidence 346778889998887 3444 444 677888888887765554 3333333322 11111 11111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
+. ....+..|+.|+|++|.|++. +.++.|++|+.|+|++|.+++..| +.. ++|+.|+|++|++++ +| .+
T Consensus 124 l~----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l 193 (605)
T 1m9s_A 124 IN----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-AL 193 (605)
T ss_dssp CG----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GG
T ss_pred Cc----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HH
Confidence 11 011234588999999999975 789999999999999999997666 777 999999999999996 55 58
Q ss_pred CCCCCCccC
Q 010819 492 TSSSKLQLV 500 (500)
Q Consensus 492 ~~l~~L~~L 500 (500)
..|++|+.|
T Consensus 194 ~~l~~L~~L 202 (605)
T 1m9s_A 194 AGLKNLDVL 202 (605)
T ss_dssp TTCTTCSEE
T ss_pred ccCCCCCEE
Confidence 889988764
No 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.38 E-value=1.6e-07 Score=95.66 Aligned_cols=140 Identities=16% Similarity=0.166 Sum_probs=87.4
Q ss_pred eeeEeecCCCcEEEEecCcc-hhhhhhcccccccccCCCCCChh-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCce
Q 010819 335 HYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~-~~piLnalEi~~l~~~~~~t~p~-~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~g 412 (500)
.++.+.++++.+. .+|+.. .. +..++.+.+..+....++. .+..+..|+. +.+.. + ...+
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~-L~L~~----n----------~l~~ 107 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDS--FRQVELLNLNDLQIEEIDTYAFAYAHTIQK-LYMGF----N----------AIRY 107 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHH--CCCCSEEECTTSCCCEECTTTTTTCTTCCE-EECCS----S----------CCCC
T ss_pred CceEEEecCCchh-hCChhHhcc--cccCcEEECCCCcccccChhhccCCCCcCE-EECCC----C----------CCCc
Confidence 4566777777776 666653 33 6678888888777555543 3444444433 22211 0 1111
Q ss_pred eeecCCCCCceeeEEEEEeCCCCCCccCCcc-cccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccc
Q 010819 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (500)
Q Consensus 413 v~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~-~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~ 490 (500)
+.. ........|+.|+|++|.++ .+|+. ++++++|++|+|++|.+++..|..+.. ++|+.|+|++|++++. +
T Consensus 108 ~~~--~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~-- 181 (390)
T 3o6n_A 108 LPP--HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D-- 181 (390)
T ss_dssp CCT--TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C--
T ss_pred CCH--HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c--
Confidence 111 01112345788889998888 45554 588888999999999888777777777 8899999999888854 2
Q ss_pred cCCCCCCc
Q 010819 491 LTSSSKLQ 498 (500)
Q Consensus 491 l~~l~~L~ 498 (500)
++.+++|+
T Consensus 182 ~~~l~~L~ 189 (390)
T 3o6n_A 182 LSLIPSLF 189 (390)
T ss_dssp GGGCTTCS
T ss_pred cccccccc
Confidence 34444443
No 103
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.38 E-value=5.4e-07 Score=80.94 Aligned_cols=72 Identities=22% Similarity=0.274 Sum_probs=62.4
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.+.+++++|+|+ .+|..+. ++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|++|
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEE
Confidence 457999999998 5887774 89999999999999888888888 999999999999996555567899998865
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.38 E-value=1.6e-07 Score=92.02 Aligned_cols=71 Identities=27% Similarity=0.409 Sum_probs=60.6
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..|+.|+|++|.+++. +.+..+++|+.|+|++|++++. +.+.. ++|+.|+|++|++++..| +..+++|++|
T Consensus 112 ~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 112 KKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNL 183 (291)
T ss_dssp TTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred CCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEE
Confidence 3488999999999863 6799999999999999999964 56777 999999999999996544 8888888764
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.38 E-value=1.3e-07 Score=101.21 Aligned_cols=63 Identities=27% Similarity=0.470 Sum_probs=55.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCcc
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
.++.|+|++|+++ .+|+.+..+++|+.|+|++|+++ .+|+. +.. ++|+.|+|++|.+.+..|-
T Consensus 451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 5888999999998 78888889999999999999999 68877 677 8999999999999887663
No 106
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.37 E-value=5.7e-07 Score=81.18 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=61.1
Q ss_pred EEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 427 ~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
+.+++++|+|+ .+|..+. ++|+.|+|++|++++..|..+.. ++|+.|+|++|+|++..+..+.++++|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 46999999996 7888775 89999999999999888888888 999999999999996444456889988864
No 107
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.35 E-value=7.7e-07 Score=88.41 Aligned_cols=83 Identities=23% Similarity=0.286 Sum_probs=65.4
Q ss_pred CCCceeeecCCCCC-----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|..+.|...... ....++.|+|++|++++..+..++++++|++|+|++|++++..|..++. ++|+.|+|++|
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 67888888743321 1235788999999998777778999999999999999999877888888 88999999888
Q ss_pred CCCccCcccc
Q 010819 482 QFTGSIPDSL 491 (500)
Q Consensus 482 ~l~G~iP~~l 491 (500)
+++ .+|..+
T Consensus 111 ~l~-~l~~~~ 119 (330)
T 1xku_A 111 QLK-ELPEKM 119 (330)
T ss_dssp CCS-BCCSSC
T ss_pred cCC-ccChhh
Confidence 887 666554
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.35 E-value=9.4e-08 Score=86.23 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=61.1
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC--cccc-CCccEEEccCCCCCccCccc----cCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDS----LTSSSK 496 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~--~l~~-~~L~~L~Ls~N~l~G~iP~~----l~~l~~ 496 (500)
..++.|+|++|.+++..+..+..+++|+.|+|++|+++ .+|. .+.. ++|+.|+|++|.++ .+|.. +..+++
T Consensus 64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~ 141 (176)
T 1a9n_A 64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQ 141 (176)
T ss_dssp SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTT
T ss_pred CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCc
Confidence 34788999999999543344589999999999999995 6776 6777 89999999999998 67774 788888
Q ss_pred CccC
Q 010819 497 LQLV 500 (500)
Q Consensus 497 L~~L 500 (500)
|+.|
T Consensus 142 L~~L 145 (176)
T 1a9n_A 142 VRVL 145 (176)
T ss_dssp CSEE
T ss_pred ccee
Confidence 8764
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.32 E-value=1.9e-07 Score=97.59 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
++.|++++|.+++. +.+.++++|+.|++++|++++..| +.. ++|+.|++++|++++
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 45555555555543 345555555555555555555444 444 555555555555554
No 110
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.31 E-value=4.8e-07 Score=90.54 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=63.8
Q ss_pred EEEeCCC-CCCccCCcccccCCCCCeEEccc-CCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 428 QIDLGSQ-GLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 428 ~L~Ls~n-~l~g~ip~~~~~L~~L~~L~Ls~-N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.++++++ +|+ .||. +..+++|+.|+|++ |+|++..|..++. ++|+.|+|++|+|+|..|..|.+|++|+.|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence 3688998 898 5888 99999999999996 9999777778888 999999999999999888899999999875
No 111
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.31 E-value=7.3e-07 Score=88.73 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=59.2
Q ss_pred CCCceeeecCCCCCc-----eeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCC
Q 010819 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N 481 (500)
|.|..+.|....... ...++.|+|++|.+++..|..+.++++|++|+|++|++++..|..++. ++|+.|+|++|
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 578888886443211 134677888888888666777888888888888888888777777777 77777777777
Q ss_pred CCCccCcccc
Q 010819 482 QFTGSIPDSL 491 (500)
Q Consensus 482 ~l~G~iP~~l 491 (500)
+++ .+|..+
T Consensus 113 ~l~-~l~~~~ 121 (332)
T 2ft3_A 113 HLV-EIPPNL 121 (332)
T ss_dssp CCC-SCCSSC
T ss_pred cCC-ccCccc
Confidence 776 555543
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.29 E-value=4e-07 Score=83.64 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=66.9
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|++++|.+++..+..++.|++|+.|+|++|++++..|..++. ++|+.|+|++|++.+.+| .+.++++|++|
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L 164 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence 45889999999999888999999999999999999999888888888 999999999998555787 68888888764
No 113
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.29 E-value=1.6e-07 Score=93.89 Aligned_cols=73 Identities=30% Similarity=0.376 Sum_probs=58.8
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|++++|.+++. +.+..+++|+.|+|++|.+++..|..++. ++|+.|+|++|++++..| +..+++|+.|
T Consensus 265 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred CCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 3478889999988864 56888889999999999998888887877 889999999999886655 6777777654
No 114
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.29 E-value=3.4e-07 Score=82.47 Aligned_cols=72 Identities=25% Similarity=0.398 Sum_probs=62.3
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcc-cc-CCccEEEccCCCCCccCcc--ccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~-~~L~~L~Ls~N~l~G~iP~--~l~~l~~L~~L 500 (500)
.++.|+|++|.+++. +.++.+++|+.|+|++|.+++ +|+.+ .. ++|+.|+|++|+++ .+|. .+.++++|++|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 488899999999975 789999999999999999995 56555 66 99999999999996 7887 78888888764
No 115
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.27 E-value=1.5e-07 Score=98.35 Aligned_cols=147 Identities=20% Similarity=0.219 Sum_probs=62.8
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCC-CCCChhHHHHHHHHHHh------------cCCCCCCCCCCCC
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVPEQVIAMRALKES------------LRVPDRMGWNGDP 401 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~-~~t~p~~~~~l~~lk~~------------l~~~~~~~w~~~p 401 (500)
.++.+.+++|.+ +.+|+..+. +..++.+.+..+. .+.+|..+..+..++.. +..... .-.+-|
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~--L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp 87 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAEN--VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCC
T ss_pred cchhhhcccCch-hhCChhHhc--ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCC
Confidence 455666778888 688888776 7777777776655 44666655544443210 111110 011111
Q ss_pred CCCCCCCCCceeeecCCCCC----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEE
Q 010819 402 CAPTNWDAWEGITCHPNKDE----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL 476 (500)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L 476 (500)
..+. ...-+........ ....++.|++++|.+++ +|.. .++|++|+|++|++++ +| .++. ++|+.|
T Consensus 88 ~~~~---~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 88 ELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp SCCT---TCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred CCcC---CCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 1111 1111111100000 01235666666666663 2221 1577888888888875 77 4666 888888
Q ss_pred EccCCCCCccCccccCCCC
Q 010819 477 DLSDNQFTGSIPDSLTSSS 495 (500)
Q Consensus 477 ~Ls~N~l~G~iP~~l~~l~ 495 (500)
++++|++++ +|..+.+|.
T Consensus 159 ~l~~N~l~~-lp~~~~~L~ 176 (454)
T 1jl5_A 159 DVDNNSLKK-LPDLPPSLE 176 (454)
T ss_dssp ECCSSCCSC-CCCCCTTCC
T ss_pred ECCCCcCcc-cCCCccccc
Confidence 888888875 676554433
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.27 E-value=3.4e-07 Score=98.25 Aligned_cols=141 Identities=26% Similarity=0.339 Sum_probs=96.4
Q ss_pred eEEEEEECCeeccceeeeccCCCccceeeeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHH
Q 010819 306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL 385 (500)
Q Consensus 306 R~F~I~lng~~l~~~di~~~~g~~~~~~~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~l 385 (500)
++-.+.+.++.+.+++. .. ...+..+++++|+|+ .+| + .+..++.+.+..|....+|. +.. .|
T Consensus 60 ~L~~L~Ls~n~L~~lp~-----~l---~~~L~~L~Ls~N~l~-~ip---~--~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPD-----NL---PPQITVLEITQNALI-SLP---E--LPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSCCSCCCS-----CC---CTTCSEEECCSSCCS-CCC---C--CCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCCCCccCH-----hH---cCCCCEEECcCCCCc-ccc---c--ccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 34456677776665431 11 135778889999888 666 2 25688999998887666776 332 23
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCCceeeecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCC
Q 010819 386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP 465 (500)
Q Consensus 386 k~~l~~~~~~~w~~~pc~~~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP 465 (500)
+. +.++. +...++.- .+..|+.|+|++|.|++ +|. .+++|+.|+|++|+|++ +|
T Consensus 123 ~~-L~Ls~--------------N~l~~lp~------~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 123 KH-LDVDN--------------NQLTMLPE------LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp CE-EECCS--------------SCCSCCCC------CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred CE-EECCC--------------CcCCCCCC------cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cc
Confidence 22 12211 11222111 12358899999999996 776 68899999999999997 88
Q ss_pred CccccCCccEEEccCCCCCccCccccCC
Q 010819 466 SGLGQQSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 466 ~~l~~~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
. +. ++|+.|+|++|+|+ .||. +..
T Consensus 177 ~-l~-~~L~~L~Ls~N~L~-~lp~-~~~ 200 (571)
T 3cvr_A 177 E-LP-ESLEALDVSTNLLE-SLPA-VPV 200 (571)
T ss_dssp C-CC-TTCCEEECCSSCCS-SCCC-CC-
T ss_pred h-hh-CCCCEEECcCCCCC-chhh-HHH
Confidence 8 65 89999999999999 8888 554
No 117
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.23 E-value=3.8e-07 Score=91.12 Aligned_cols=73 Identities=18% Similarity=0.310 Sum_probs=63.5
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|++++|.+++. +.+..+++|+.|++++|++++ +| .+.. ++|+.|+|++|++++..|..++++++|++|
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 316 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTL 316 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEE
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEE
Confidence 4588999999999863 579999999999999999996 44 4666 999999999999999989989999998864
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.22 E-value=1.4e-09 Score=100.49 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=58.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCC--Ccccc-CCccEEEccCCCCCccCccc----------
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP--SGLGQ-QSLVRLDLSDNQFTGSIPDS---------- 490 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP--~~l~~-~~L~~L~Ls~N~l~G~iP~~---------- 490 (500)
..++.|+|++|.+++ +| .+..+++|+.|+|++|++++ +| +.+.. ++|+.|++++|.+++.+|..
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 347789999999986 55 68899999999999999984 33 35666 88999999999998877753
Q ss_pred cCCCCCCccC
Q 010819 491 LTSSSKLQLV 500 (500)
Q Consensus 491 l~~l~~L~~L 500 (500)
+..+++|+.|
T Consensus 170 ~~~l~~L~~L 179 (198)
T 1ds9_A 170 VKRLPNLKKL 179 (198)
T ss_dssp HHHCSSCSEE
T ss_pred HHhCCCcEEE
Confidence 6777777654
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.20 E-value=5e-07 Score=94.42 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred EEEEEeCCCCCCccCCcccccCC-------CCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLS-------NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~-------~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
++.|++++|.+++..+..+.+|+ +|+.|++++|.+.|.+| ++. ++|+.|+|++|.+.|.+|.
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred CCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 44445555554443333333333 33444444444444444 223 5555555555555555554
No 120
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.20 E-value=7.7e-07 Score=96.50 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=27.6
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~ 490 (500)
|+.|+|++|.|+ .+|. .+++|+.|+|++|+|+ .||+.+.. ++|+.|+|++|+++|.+|..
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHH
Confidence 444444444444 2333 3344444444444444 44444444 44455555555444444443
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.19 E-value=7.6e-07 Score=93.02 Aligned_cols=132 Identities=18% Similarity=0.187 Sum_probs=90.5
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcee
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv 413 (500)
..++.+++++|++++ ++ .+. +..++.+.+..+....++ +..+..|+. +.+.. +...++
T Consensus 64 ~~L~~L~Ls~n~l~~-~~--~~~--l~~L~~L~Ls~N~l~~~~--~~~l~~L~~-L~L~~--------------N~l~~l 121 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD--LSQ--NTNLTYLACDSNKLTNLD--VTPLTKLTY-LNCDT--------------NKLTKL 121 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTT--CTTCSEEECCSSCCSCCC--CTTCTTCCE-EECCS--------------SCCSCC
T ss_pred CCCCEEEccCCcCCe-Ec--ccc--CCCCCEEECcCCCCceee--cCCCCcCCE-EECCC--------------CcCCee
Confidence 357778888888774 33 444 667888888887755553 333333322 11111 122222
Q ss_pred eecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccC
Q 010819 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (500)
Q Consensus 414 ~c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~ 492 (500)
. ......++.|++++|.+++ ++ ++.+++|+.|++++|+..|.++ ++. ++|+.|+|++|++++ +| ++
T Consensus 122 ~-----~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~-l~--l~ 188 (457)
T 3bz5_A 122 D-----VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE-LD--VS 188 (457)
T ss_dssp C-----CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCC-CC--CT
T ss_pred c-----CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccce-ec--cc
Confidence 1 1223568899999999997 43 8899999999999998887873 666 999999999999996 66 78
Q ss_pred CCCCCccC
Q 010819 493 SSSKLQLV 500 (500)
Q Consensus 493 ~l~~L~~L 500 (500)
.+++|+.|
T Consensus 189 ~l~~L~~L 196 (457)
T 3bz5_A 189 QNKLLNRL 196 (457)
T ss_dssp TCTTCCEE
T ss_pred cCCCCCEE
Confidence 88887754
No 122
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.17 E-value=1.2e-06 Score=86.34 Aligned_cols=78 Identities=19% Similarity=0.115 Sum_probs=63.3
Q ss_pred eeeEEEEEeCCCCCCccCC----cccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCcc--Ccc--ccCC
Q 010819 423 AVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--IPD--SLTS 493 (500)
Q Consensus 423 ~~~l~~L~Ls~n~l~g~ip----~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~--iP~--~l~~ 493 (500)
...++.|+|++|.+++.++ ..+..+++|++|+|++|.+++..|..++. ++|+.|+|++|++.|. +|. .+++
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 3568899999999998766 44567999999999999999888888888 9999999999998764 332 2467
Q ss_pred CCCCccC
Q 010819 494 SSKLQLV 500 (500)
Q Consensus 494 l~~L~~L 500 (500)
+++|++|
T Consensus 196 l~~L~~L 202 (310)
T 4glp_A 196 FPAIQNL 202 (310)
T ss_dssp SCCCCSC
T ss_pred CCCCCEE
Confidence 7777765
No 123
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.15 E-value=1e-06 Score=92.05 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=37.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
..++.|++++|.+++ +|... .+|+.|++++|.++ .+|+ ++. ++|+.|++++|++++ +|+.+
T Consensus 195 ~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~~ 256 (454)
T 1jl5_A 195 PFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDLP 256 (454)
T ss_dssp TTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSCC
T ss_pred CCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccccc
Confidence 346666666666664 44322 36666777777666 5664 555 777777777777764 55433
No 124
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=1.1e-06 Score=84.77 Aligned_cols=74 Identities=26% Similarity=0.256 Sum_probs=62.3
Q ss_pred eEEEEEeCCCCCCc--cCCcccccCCCCCeEEcccCCCCccCCCcccc-C--CccEEEccCCCCCccCcc-------ccC
Q 010819 425 VISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SLT 492 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g--~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~--~L~~L~Ls~N~l~G~iP~-------~l~ 492 (500)
.|+.|+|++|.|++ .+|..+..+++|+.|+|++|++++. +.+.. . +|+.|+|++|.+++.+|. .+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 48899999999998 6788889999999999999999965 44555 5 899999999999998873 356
Q ss_pred CCCCCccC
Q 010819 493 SSSKLQLV 500 (500)
Q Consensus 493 ~l~~L~~L 500 (500)
.+++|+.|
T Consensus 249 ~~P~L~~L 256 (267)
T 3rw6_A 249 RFPKLLRL 256 (267)
T ss_dssp HCTTCCEE
T ss_pred HCcccCeE
Confidence 77777654
No 125
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.08 E-value=2.7e-06 Score=85.38 Aligned_cols=93 Identities=13% Similarity=0.104 Sum_probs=72.2
Q ss_pred CCCceeeecCCCCC-----ceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCcc-EEEcc
Q 010819 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLV-RLDLS 479 (500)
Q Consensus 408 ~~w~gv~c~~~~~~-----~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~-~L~Ls 479 (500)
|.+..+.|+..+.. -+..+++|+|++|+|+...+..|.+|++|++|+|++|++.+.+|.. +.. ++|+ .+.+.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 78889999754422 1245889999999999444457999999999999999998888875 444 6655 57778
Q ss_pred CCCCCccCccccCCCCCCccC
Q 010819 480 DNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 480 ~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|++++..|..+..+++|++|
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEE
T ss_pred CCcccccCchhhhhccccccc
Confidence 899996667788899988864
No 126
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.07 E-value=1.3e-06 Score=91.13 Aligned_cols=71 Identities=18% Similarity=0.270 Sum_probs=60.0
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..|+.|+|++|.+++..| +..+++|+.|++++|.+++. +.+.. ++|+.|++++|++++.+| +.++++|+.|
T Consensus 309 ~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 309 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 458889999999997665 78999999999999999864 45677 999999999999998877 7888888754
No 127
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.07 E-value=2.2e-06 Score=80.92 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=32.1
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCC-CCccCCCcccc-CCccEEEccC-CCCCccCccccCCCCCCc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQ 498 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~-~~L~~L~Ls~-N~l~G~iP~~l~~l~~L~ 498 (500)
++.|+|++|++++..+..+..+++|+.|+|++|+ +++..+..+.. ++|+.|+|++ |++++..|..+.++++|+
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 4445555555544333344445555555555553 43222223333 4455555544 444432223344444444
No 128
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.03 E-value=2.1e-06 Score=82.73 Aligned_cols=135 Identities=24% Similarity=0.328 Sum_probs=94.7
Q ss_pred eeeEeecCCCcEEEEecCcchhhhhhcccccccccCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCceee
Q 010819 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (500)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~~~~t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w~gv~ 414 (500)
.++.+++++|.++ .++ .... +..++.+.+..+....++. +..+..|+. +.+.. + ...++.
T Consensus 42 ~L~~L~l~~n~i~-~l~-~l~~--l~~L~~L~L~~N~i~~~~~-l~~l~~L~~-L~L~~----N----------~l~~l~ 101 (263)
T 1xeu_A 42 GVQNFNGDNSNIQ-SLA-GMQF--FTNLKELHLSHNQISDLSP-LKDLTKLEE-LSVNR----N----------RLKNLN 101 (263)
T ss_dssp TCSEEECTTSCCC-CCT-TGGG--CTTCCEEECCSSCCCCCGG-GTTCSSCCE-EECCS----S----------CCSCCT
T ss_pred cCcEEECcCCCcc-cch-HHhh--CCCCCEEECCCCccCCChh-hccCCCCCE-EECCC----C----------ccCCcC
Confidence 5677888888876 554 3333 6788889998888777765 333333322 11211 1 111111
Q ss_pred ecCCCCCceeeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCC
Q 010819 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 415 c~~~~~~~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
... . ..++.|+|++|++++ + +.+..+++|+.|+|++|++++ +| .+.. ++|+.|+|++|++++. ..+.+
T Consensus 102 ~~~----~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~ 170 (263)
T 1xeu_A 102 GIP----S-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTR 170 (263)
T ss_dssp TCC----C-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTT
T ss_pred ccc----c-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhcc
Confidence 000 0 348899999999996 3 469999999999999999996 45 5777 9999999999999975 67888
Q ss_pred CCCCccC
Q 010819 494 SSKLQLV 500 (500)
Q Consensus 494 l~~L~~L 500 (500)
+++|+.|
T Consensus 171 l~~L~~L 177 (263)
T 1xeu_A 171 LKKVNWI 177 (263)
T ss_dssp CCCCCEE
T ss_pred CCCCCEE
Confidence 8888764
No 129
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.96 E-value=5e-08 Score=97.04 Aligned_cols=150 Identities=20% Similarity=0.187 Sum_probs=92.1
Q ss_pred eeeeEeecCCCcEEEEecCcchhhhhhcccccccccC-CCC--CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 010819 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPN-DLS--TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (500)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~piLnalEi~~l~~~-~~~--t~p~~~~~l~~lk~~l~~~~~~~w~~~pc~~~~~~~w 410 (500)
..++.+++++|.++...+...+. +..++.+.+..+ ... .++..+..+..|+. +.+. ++ + ..
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~--~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~-L~l~----~~--~-------~l 181 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAK--NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE-LNLS----WC--F-------DF 181 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTT--CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE-EECC----CC--T-------TC
T ss_pred CCCCEEeCcCcccCHHHHHHHhc--CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE-EcCC----CC--C-------Cc
Confidence 35777888888765444443433 667888888776 332 13333333332322 1111 11 0 11
Q ss_pred ceeeecCCCCCcee-eEEEEEeCCC--CCC-ccCCcccccCCCCCeEEcccCC-CCccCCCcccc-CCccEEEccCCC-C
Q 010819 411 EGITCHPNKDETAV-VISQIDLGSQ--GLK-GYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSDNQ-F 483 (500)
Q Consensus 411 ~gv~c~~~~~~~~~-~l~~L~Ls~n--~l~-g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~-~~L~~L~Ls~N~-l 483 (500)
++.... ......+ .|+.|+|++| .++ +.+|..+..+++|+.|+|++|. +++..+..++. ++|+.|+|++|. +
T Consensus 182 ~~~~~~-~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 182 TEKHVQ-VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CHHHHH-HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred ChHHHH-HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 110000 0001123 5889999999 566 6778888999999999999999 78788888888 999999999996 3
Q ss_pred CccCccccCCCCCCccC
Q 010819 484 TGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 484 ~G~iP~~l~~l~~L~~L 500 (500)
.......++++++|+.|
T Consensus 261 ~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 261 IPETLLELGEIPTLKTL 277 (336)
T ss_dssp CGGGGGGGGGCTTCCEE
T ss_pred CHHHHHHHhcCCCCCEE
Confidence 22212257788888764
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.96 E-value=1.5e-06 Score=94.17 Aligned_cols=68 Identities=29% Similarity=0.367 Sum_probs=52.4
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCccccCCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
.|+.|+|++|.+++ +| ..+++|+.|+|++|+|+ .+|. ..++|+.|+|++|+++ .||..+.++++|+.|
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L 289 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTV 289 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEE
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccCEE
Confidence 37778888888885 66 45678888888888888 5776 2277888888888888 788888888887754
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.81 E-value=2.4e-06 Score=86.80 Aligned_cols=76 Identities=20% Similarity=0.383 Sum_probs=63.9
Q ss_pred eEEEEEeCCCCCC--c---cCCcccccCCCCCeEEcccCCCC----ccCCCcccc-CCccEEEccCCCCCcc----Cccc
Q 010819 425 VISQIDLGSQGLK--G---YISDKISLLSNLVNLNLSTNSLG----GTLPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (500)
Q Consensus 425 ~l~~L~Ls~n~l~--g---~ip~~~~~L~~L~~L~Ls~N~l~----G~iP~~l~~-~~L~~L~Ls~N~l~G~----iP~~ 490 (500)
.|+.|+|++|+++ | .++..+..+++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 4889999999998 4 34558899999999999999996 778888888 9999999999999876 6777
Q ss_pred c--CCCCCCccC
Q 010819 491 L--TSSSKLQLV 500 (500)
Q Consensus 491 l--~~l~~L~~L 500 (500)
+ +++++|+.|
T Consensus 268 l~~~~~~~L~~L 279 (386)
T 2ca6_A 268 FSKLENIGLQTL 279 (386)
T ss_dssp HHTCSSCCCCEE
T ss_pred HhhccCCCeEEE
Confidence 6 447888764
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.77 E-value=5.5e-07 Score=82.75 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=61.9
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCccC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L 500 (500)
..++.|+|++|.+++ +| .+..+++|+.|+|++|.++ .+|..+.. ++|+.|+|++|++++ +| .++.+++|++|
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 458899999999996 77 9999999999999999998 78987777 999999999999996 66 57777777653
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.70 E-value=2.4e-06 Score=84.75 Aligned_cols=76 Identities=26% Similarity=0.278 Sum_probs=48.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccC-CCCcc-CCCcccc-CCccEEEccCC-CCCcc-CccccCCCC-CC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGT-LPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSS-KL 497 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N-~l~G~-iP~~l~~-~~L~~L~Ls~N-~l~G~-iP~~l~~l~-~L 497 (500)
+.|+.|+|++|.+++.++..++.+++|++|+|++| .+++. +|..+.. ++|+.|+|++| ++++. +|..+.+++ +|
T Consensus 118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L 197 (336)
T 2ast_B 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI 197 (336)
T ss_dssp CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence 34666777777766666666666777777777776 56552 5555555 66777777777 66654 555566666 66
Q ss_pred cc
Q 010819 498 QL 499 (500)
Q Consensus 498 ~~ 499 (500)
++
T Consensus 198 ~~ 199 (336)
T 2ast_B 198 TQ 199 (336)
T ss_dssp CE
T ss_pred CE
Confidence 54
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.60 E-value=4.8e-06 Score=84.56 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=54.3
Q ss_pred eeEEEEEeCCCCCC----ccCCcccccCCCCCeEEcccCCCCcc----CCCcc--cc-CCccEEEccCCCCCc----cCc
Q 010819 424 VVISQIDLGSQGLK----GYISDKISLLSNLVNLNLSTNSLGGT----LPSGL--GQ-QSLVRLDLSDNQFTG----SIP 488 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~----g~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l--~~-~~L~~L~Ls~N~l~G----~iP 488 (500)
+.|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+ +. ++|+.|+|++|++++ .+|
T Consensus 216 ~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~ 295 (386)
T 2ca6_A 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred CCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHH
Confidence 34777888888875 56777777788888888888887765 55555 33 678888888888876 477
Q ss_pred ccc-CCCCCCccC
Q 010819 489 DSL-TSSSKLQLV 500 (500)
Q Consensus 489 ~~l-~~l~~L~~L 500 (500)
..+ .++++|+.|
T Consensus 296 ~~l~~~l~~L~~L 308 (386)
T 2ca6_A 296 TVIDEKMPDLLFL 308 (386)
T ss_dssp HHHHHHCTTCCEE
T ss_pred HHHHhcCCCceEE
Confidence 766 456666543
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.25 E-value=3.7e-05 Score=77.35 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=59.1
Q ss_pred eEEEEEeCCCCCCccCCcccccC-----CCCCeEEcccCCCCccCCCcccc------CCccEEEccCCCCCccCccccC-
Q 010819 425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLT- 492 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L-----~~L~~L~Ls~N~l~G~iP~~l~~------~~L~~L~Ls~N~l~G~iP~~l~- 492 (500)
.++.|+|++|.+++..+..+..+ ++|+.|+|++|.+++..+..++. ++|+.|+|++|++++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 48899999999998878888776 89999999999999777764433 5799999999999876665443
Q ss_pred ---C-CCCCccC
Q 010819 493 ---S-SSKLQLV 500 (500)
Q Consensus 493 ---~-l~~L~~L 500 (500)
. .++|++|
T Consensus 132 ~l~~~~~~L~~L 143 (362)
T 3goz_A 132 AFSNLPASITSL 143 (362)
T ss_dssp HHTTSCTTCCEE
T ss_pred HHHhCCCceeEE
Confidence 3 2466653
No 136
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.24 E-value=0.00019 Score=71.72 Aligned_cols=62 Identities=27% Similarity=0.306 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
++.|+|++|+++ .||+.....++|+.|++++|+..+.||+. +.. ++|+.|||++|+|+ .+|.
T Consensus 156 l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~ 219 (350)
T 4ay9_X 156 SVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS 219 (350)
T ss_dssp CEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS
T ss_pred hhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh
Confidence 445555555555 34444444455555555543333355543 233 55555555555555 4443
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.09 E-value=6.4e-05 Score=72.44 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=44.0
Q ss_pred cccCCCCCeEEcccCCCCc--cCCCcccc-CCccEEEccCCCCCccCccccCCCC--CCccC
Q 010819 444 ISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLV 500 (500)
Q Consensus 444 ~~~L~~L~~L~Ls~N~l~G--~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L 500 (500)
..++++|+.|+|++|+|++ .+|..+.. ++|+.|+|++|++++. +.+..+. +|++|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 3578999999999999998 67777777 9999999999999964 3445444 56543
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.05 E-value=0.0001 Score=74.16 Aligned_cols=76 Identities=25% Similarity=0.291 Sum_probs=62.0
Q ss_pred eEEEEEeCCCCCCccCC----cccccCC-CCCeEEcccCCCCccCCCcccc------CCccEEEccCCCCCccCccccCC
Q 010819 425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTS 493 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip----~~~~~L~-~L~~L~Ls~N~l~G~iP~~l~~------~~L~~L~Ls~N~l~G~iP~~l~~ 493 (500)
.++.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..++. ++|+.|+|++|++++..+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48899999999987666 6788888 8999999999999877776655 68999999999999877765443
Q ss_pred ----C-CCCccC
Q 010819 494 ----S-SKLQLV 500 (500)
Q Consensus 494 ----l-~~L~~L 500 (500)
+ ++|++|
T Consensus 103 ~l~~~~~~L~~L 114 (362)
T 3goz_A 103 TLAAIPFTITVL 114 (362)
T ss_dssp HHHTSCTTCCEE
T ss_pred HHHhCCCCccEE
Confidence 3 677654
No 139
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.02 E-value=5.3e-05 Score=78.34 Aligned_cols=62 Identities=23% Similarity=0.235 Sum_probs=39.3
Q ss_pred eEEEEEeCCCCCCccCCccccc-----CCCCCeEEcccCCCCc----cCCCcccc-CCccEEEccCCCCCcc
Q 010819 425 VISQIDLGSQGLKGYISDKISL-----LSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGS 486 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~-----L~~L~~L~Ls~N~l~G----~iP~~l~~-~~L~~L~Ls~N~l~G~ 486 (500)
.++.|+|++|.+++..+..+.. .++|+.|+|++|.+++ .+|..+.. ++|+.|+|++|++++.
T Consensus 342 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 342 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp SCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 4666777777666544444432 5567777777777765 56666665 6777777777776653
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.86 E-value=8.7e-05 Score=76.70 Aligned_cols=66 Identities=26% Similarity=0.282 Sum_probs=48.9
Q ss_pred eeEEEEEeCCCCCCccCCcccc-cCC----CCCeEEcccCCCCc----cCCCcccc-CCccEEEccCCCCCccCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKIS-LLS----NLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~-~L~----~L~~L~Ls~N~l~G----~iP~~l~~-~~L~~L~Ls~N~l~G~iP~ 489 (500)
+.++.|+|++|.++...+..+. .+. +|++|+|++|+++. .+|..+.. ++|+.|+|++|++++..+.
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH
Confidence 3478889998888765444443 355 68899999998883 56777777 8899999999888765444
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.37 E-value=0.00028 Score=71.37 Aligned_cols=68 Identities=24% Similarity=0.302 Sum_probs=50.0
Q ss_pred eeEEEEEeCCCCCCc----cCCcccccCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEccCCCCCccCcccc
Q 010819 424 VVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l 491 (500)
..|+.|+|++|.++. .++..+...++|+.|+|++|.++.. +...+.. ++|+.|+|++|.++..-...+
T Consensus 183 ~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 183 TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 348889999999874 2466677888999999999998753 3444444 789999999999875433333
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.12 E-value=0.00035 Score=74.59 Aligned_cols=75 Identities=9% Similarity=-0.048 Sum_probs=53.6
Q ss_pred eeEEEEEeCCCCCC----ccCCcccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEccCCCCC---ccCccccCCCC
Q 010819 424 VVISQIDLGSQGLK----GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT---GSIPDSLTSSS 495 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~----g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~l~---G~iP~~l~~l~ 495 (500)
..|+.|+|++|.++ +.++..+.++++|+.|+|++|.+.+ +|..+.. ++|+.|+++++... +..+..+..++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 35788888888887 4556666788888888888888885 6766766 88888888764332 33445666666
Q ss_pred CCcc
Q 010819 496 KLQL 499 (500)
Q Consensus 496 ~L~~ 499 (500)
+|+.
T Consensus 271 ~L~~ 274 (592)
T 3ogk_B 271 KLCR 274 (592)
T ss_dssp TCCE
T ss_pred cccc
Confidence 6654
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.94 E-value=0.0011 Score=67.15 Aligned_cols=77 Identities=18% Similarity=0.321 Sum_probs=58.1
Q ss_pred eeEEEEEeCCCCCCc----cCCcccccCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEccCCCCCcc----Cccc
Q 010819 424 VVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g----~ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~Ls~N~l~G~----iP~~ 490 (500)
..|+.|+|++|.++. .++..+..+++|++|+|++|.++.. ++..+.. ++|+.|+|++|+++.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 358899999999974 3566668899999999999999742 3455566 8899999999999753 4445
Q ss_pred cCCCCCCccC
Q 010819 491 LTSSSKLQLV 500 (500)
Q Consensus 491 l~~l~~L~~L 500 (500)
+...++|++|
T Consensus 235 L~~~~~L~~L 244 (372)
T 3un9_A 235 AREHPSLELL 244 (372)
T ss_dssp HHHCSSCCEE
T ss_pred HHhCCCCCEE
Confidence 5555666653
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.89 E-value=0.0011 Score=60.05 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=54.4
Q ss_pred eeEEEEEeCCCCCCcc----CCcccccCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEc--cCCCCCcc----Cc
Q 010819 424 VVISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDL--SDNQFTGS----IP 488 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~L--s~N~l~G~----iP 488 (500)
..++.|+|++|.+... +...+...+.|++|+|++|.+... +...+.. +.|+.|+| ++|.+... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3488899999998642 455566778899999999998753 4555666 78999999 88988754 33
Q ss_pred cccCCCCCCcc
Q 010819 489 DSLTSSSKLQL 499 (500)
Q Consensus 489 ~~l~~l~~L~~ 499 (500)
+.+...++|++
T Consensus 145 ~~L~~n~~L~~ 155 (185)
T 1io0_A 145 NMLEKNTTLLK 155 (185)
T ss_dssp HHHHHCSSCCE
T ss_pred HHHHhCCCcCE
Confidence 34444455554
No 145
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.80 E-value=0.015 Score=49.31 Aligned_cols=54 Identities=28% Similarity=0.475 Sum_probs=34.2
Q ss_pred EEEeCCCCCC-ccCCcccccCCCCCeEEcccCCCCccCCCcc-cc-CCccEEEccCCCCC
Q 010819 428 QIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 428 ~L~Ls~n~l~-g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l-~~-~~L~~L~Ls~N~l~ 484 (500)
.++.++++|+ ..+|..+. .+|+.|+|++|+|+ .||... .. ++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4666666665 34554322 35777888888887 455543 34 77888888887663
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.64 E-value=0.0012 Score=59.71 Aligned_cols=60 Identities=15% Similarity=0.336 Sum_probs=48.2
Q ss_pred eEEEEEeCCCCCCcc----CCcccccCCCCCeEEc--ccCCCCcc----CCCcccc-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNL--STNSLGGT----LPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~L--s~N~l~G~----iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
.++.|+|++|.+... +...+...+.|++|+| ++|.+... +-+.+.. +.|+.|+|++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 488999999999853 5677888889999999 88999754 3334444 78999999999875
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.89 E-value=0.0018 Score=68.99 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=36.3
Q ss_pred eEEEEEeCCCCCCccCCccc-ccCCCCCeEEcccCCCCccCCCccc-c-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~-~~L~~L~~L~Ls~N~l~G~iP~~l~-~-~~L~~L~Ls~N~l~ 484 (500)
.|+.|+|++|.+++.....+ ..+++|+.|+|++|.+++..+..+. . ++|+.|+|++|+++
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 36667777777665444444 5567777777777776544333232 2 66777777777664
No 148
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=94.64 E-value=0.0088 Score=63.58 Aligned_cols=75 Identities=13% Similarity=0.104 Sum_probs=58.1
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCC---ccCCCcccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG---GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~---G~iP~~l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
+.|+.|+|++|.+.+ +|..+.++++|+.|+++++... +..+..+.. ++|+.|+++++. .+.+|..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcE
Confidence 358899999999886 7788999999999999874433 344456666 899999998864 4478888877877776
Q ss_pred C
Q 010819 500 V 500 (500)
Q Consensus 500 L 500 (500)
|
T Consensus 298 L 298 (592)
T 3ogk_B 298 L 298 (592)
T ss_dssp E
T ss_pred E
Confidence 4
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=94.53 E-value=0.0035 Score=66.75 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=37.3
Q ss_pred eEEEEEeCCC-CCCcc-CCcccccCCCCCeEEcccCCCCccCCCccc----c-CCccEEEccCCC
Q 010819 425 VISQIDLGSQ-GLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQ 482 (500)
Q Consensus 425 ~l~~L~Ls~n-~l~g~-ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~----~-~~L~~L~Ls~N~ 482 (500)
.|+.|+|++| .++.. ++.-+.++++|++|+|++|.+++..+..+. . ++|+.|+|++|.
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 4677777777 44432 444445777888888888877655444333 3 578888888776
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=94.48 E-value=0.009 Score=53.50 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=52.3
Q ss_pred eeEEEEEeCCCCCCccCCcccccCCCCCeEEcccCC-CCccCCCcccc-----CCccEEEccCCC-CCccCccccCCCCC
Q 010819 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSK 496 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~-l~G~iP~~l~~-----~~L~~L~Ls~N~-l~G~iP~~l~~l~~ 496 (500)
..|+.|||+++.++..=-..+..+++|+.|+|+++. ++..-=..++. ++|+.|+|+++. ++..==..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 359999999999875434567889999999999985 65321112222 269999999974 66432234666777
Q ss_pred CccC
Q 010819 497 LQLV 500 (500)
Q Consensus 497 L~~L 500 (500)
|+.|
T Consensus 141 L~~L 144 (176)
T 3e4g_A 141 LKYL 144 (176)
T ss_dssp CCEE
T ss_pred CCEE
Confidence 7654
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.99 E-value=0.049 Score=53.41 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=57.0
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCC-eEEcccCCCCccCC-Ccccc-CCccEEEccCCCCCccCcc-ccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLV-NLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~-~L~Ls~N~l~G~iP-~~l~~-~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L 500 (500)
.|+.|+|.+| +...-+..|.++.+|+ .|+|.+ +++ .|+ ..+.. ++|+.|+|+.|+++ .|++ .+.++++|+.|
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPSKLI 326 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCCCEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccC-ccchhhhcCCcchhhh
Confidence 4788999887 7644456789999999 999998 776 455 45556 99999999999998 5554 78899999864
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.98 E-value=0.04 Score=54.08 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=57.5
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCcc-EEEccCCCCCccCc-cccCCCCCCccC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLV-RLDLSDNQFTGSIP-DSLTSSSKLQLV 500 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~-~L~Ls~N~l~G~iP-~~l~~l~~L~~L 500 (500)
.|+.|+|++|+++..-+..|.++++|+.|+|.+| +. .|++. +.. .+|+ .|+|++ +++ .|+ .++.+|++|+.|
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYV 302 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEE
Confidence 4889999999998544557999999999999998 66 56665 445 8899 999998 776 555 578888888754
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.26 E-value=0.079 Score=44.71 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=32.1
Q ss_pred eEEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCC
Q 010819 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG 461 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~ 461 (500)
.++.|+|++|+|+..-+..|..|.+|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5889999999999555566889999999999999874
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=92.59 E-value=0.017 Score=58.03 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=46.6
Q ss_pred eeEEEEEeCCCCCCccCCcccc---cCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEccCCCCCc
Q 010819 424 VVISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTG 485 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~ip~~~~---~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~Ls~N~l~G 485 (500)
+.|+.|+|.+|.+....+..+. .+++|+.|+|+.|.+.+. ++..+.. ++|+.|+|++|.++.
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 4588899998888755444443 578899999999998863 5555555 889999999998764
No 155
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=90.16 E-value=6.1 Score=33.42 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=55.1
Q ss_pred CCCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeCCceEEEEee
Q 010819 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (500)
Q Consensus 87 g~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~~ 166 (500)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||.........-.+..-........-+....+.=.|+|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 445588998888899999998875432 2578999999976432221111111111111222234455555555553
Q ss_pred c-CCCCceeeeeeeeecC
Q 010819 167 F-ATDPPVIASLEVQQID 183 (500)
Q Consensus 167 ~-~~~~pfIn~iEl~~l~ 183 (500)
. ..+.|-|.-|+|.+.+
T Consensus 115 ~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp CSTTCCCEEEEEEEEECT
T ss_pred eCCCCCEEEeEEEEEeCC
Confidence 3 3457999999998754
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.12 E-value=0.028 Score=56.40 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=40.8
Q ss_pred cCCCCCeEEcccCCCCccCCCccc---c-CCccEEEccCCCCCcc----CccccCCCCCCccC
Q 010819 446 LLSNLVNLNLSTNSLGGTLPSGLG---Q-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLV 500 (500)
Q Consensus 446 ~L~~L~~L~Ls~N~l~G~iP~~l~---~-~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L 500 (500)
.+++|+.|+|.+|.+....+..+. . ++|+.|+|+.|++.+. ++..+.++++|+.|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 578999999999999865544443 2 7899999999999873 55554556666643
No 157
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=87.94 E-value=8.6 Score=31.58 Aligned_cols=89 Identities=15% Similarity=0.103 Sum_probs=51.2
Q ss_pred CCCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeCCceEEEEee
Q 010819 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (500)
Q Consensus 87 g~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~~ 166 (500)
|..-.|++.+.+.|.|.|++++.-+. + ..+.++|++||.........-.+..-.........+....+.=.|.|..
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~~ 113 (127)
T 2vzp_A 38 GSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAVA 113 (127)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEEE
Confidence 44568999888889999999987543 1 3578999999976433121111110011111122333455555555554
Q ss_pred c-CCCCceeeeeee
Q 010819 167 F-ATDPPVIASLEV 179 (500)
Q Consensus 167 ~-~~~~pfIn~iEl 179 (500)
. ..+.|-|.-|+|
T Consensus 114 ~~~~~~~niD~i~v 127 (127)
T 2vzp_A 114 TTANGGPNVDKITL 127 (127)
T ss_dssp CSTTCCCEEEEEEC
T ss_pred eCCCCCeEEEEEEC
Confidence 3 345677777764
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.48 E-value=0.11 Score=47.33 Aligned_cols=58 Identities=21% Similarity=0.222 Sum_probs=41.6
Q ss_pred eeEEEEEeCCCCCCcc----CCcccccCCCCCeEEcccCCCCcc----CCCcccc-CCccEEEccCC
Q 010819 424 VVISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDN 481 (500)
Q Consensus 424 ~~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~l~G~----iP~~l~~-~~L~~L~Ls~N 481 (500)
..|+.|+|++|.+... |...+..=+.|+.|+|++|.+... |-+.+.. +.|+.|+|++|
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3588899999998732 444555667899999999998743 2233444 67999999865
No 159
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=85.35 E-value=13 Score=31.41 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=54.2
Q ss_pred CCCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeCCceEEEEee
Q 010819 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (500)
Q Consensus 87 g~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~~ 166 (500)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-.. ..-.+.+-....-..+-+....+.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~v-~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKTL-DFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEEE-CCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeEE-EecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 444588888878899999988864322 25789999999765221 1111110011111222333455555556654
Q ss_pred c-CCCCceeeeeeeeecC
Q 010819 167 F-ATDPPVIASLEVQQID 183 (500)
Q Consensus 167 ~-~~~~pfIn~iEl~~l~ 183 (500)
. +.+.|-|.-|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 3467999999987554
No 160
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=82.62 E-value=1.4 Score=44.44 Aligned_cols=36 Identities=19% Similarity=0.178 Sum_probs=16.9
Q ss_pred ccccCCCCCeEEcccCCCCccCCCcccc-CCccEEEcc
Q 010819 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (500)
Q Consensus 443 ~~~~L~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls 479 (500)
.|.++.+|+.++|++|+++ .||..... .+|+.+.|.
T Consensus 175 aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp TTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECC
T ss_pred HhhCcccCCeeecCCCcce-EechhhEeecccCEEEeC
Confidence 4445555555555555554 34433333 444444444
No 161
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=77.85 E-value=16 Score=30.58 Aligned_cols=91 Identities=14% Similarity=0.014 Sum_probs=51.2
Q ss_pred CCCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEE-EecCCCCccccCCCceEEEEEEEeeCCceEEEEe
Q 010819 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (500)
Q Consensus 87 g~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~-l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~ 165 (500)
|..-.|++.+.+.|.|.|+++|.-+. + ..+..+|++||... ......-.+..-........-+....+.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~--~--~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGG--T--ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCS--S--SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCC--C--CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 33447888887889999999886542 1 24789999998542 0111111111001111122333345555455555
Q ss_pred ecC-CCCceeeeeeeee
Q 010819 166 SFA-TDPPVIASLEVQQ 181 (500)
Q Consensus 166 ~~~-~~~pfIn~iEl~~ 181 (500)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 443 4679999999874
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.58 E-value=0.57 Score=42.44 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCCcc----CCcccccCCCCCeEEcccCC---CCcc----CCCcccc-CCccEEEccCCCCC
Q 010819 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNS---LGGT----LPSGLGQ-QSLVRLDLSDNQFT 484 (500)
Q Consensus 425 ~l~~L~Ls~n~l~g~----ip~~~~~L~~L~~L~Ls~N~---l~G~----iP~~l~~-~~L~~L~Ls~N~l~ 484 (500)
.|+.|+|++|.+... |-+.+..=+.|+.|+|++|. +... |-+.+.. +.|+.|+|+.|...
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 488999999999743 34445555679999998753 3321 2233444 78999999887653
No 163
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=75.16 E-value=16 Score=31.43 Aligned_cols=90 Identities=11% Similarity=0.093 Sum_probs=51.6
Q ss_pred eeE-eecCCCccEEEEEEeeccCC------CCCCCCCceEEEECCEEEEe-cCCCCccccCCCceEEEEEEEeeCCceEE
Q 010819 91 CYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRSPWPEGLARDGAYSDLFAFVKDGELDL 162 (500)
Q Consensus 91 ~Y~-~~v~~~~~ylvRl~F~y~~y------d~~~~~~~F~v~~~~~~~l~-~~~~~~~~~~~~~~~~e~i~~~~~~~l~v 162 (500)
.|+ +.+.+.|.|.|++.|.-+.. ......+..+|.|||...-+ .|- .+..-.......+.+....+.=.|
T Consensus 50 tf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp--~Tg~W~~~~~~tv~V~L~aG~NtI 127 (156)
T 2wz8_A 50 QFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF--NTRGWNTYRTDIIDVYLNAGNNTI 127 (156)
T ss_dssp EEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC--CCSSTTCCEEEEEEEEECSEEEEE
T ss_pred EEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC--CCCCCCcceEEEEEEEECCCceEE
Confidence 676 77777899999999965531 11112578999998854111 121 111001111122333456666778
Q ss_pred EEeec--CCCCceeeeeeeeec
Q 010819 163 CFYSF--ATDPPVIASLEVQQI 182 (500)
Q Consensus 163 ~f~~~--~~~~pfIn~iEl~~l 182 (500)
.|... ....|-|-.|+|.+.
T Consensus 128 ~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 128 RFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEECCSTTCBCCEEEEEEEEC-
T ss_pred EEEecCCCCCCcEEEEEEEecc
Confidence 88766 344688888888653
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=73.32 E-value=2.6 Score=42.43 Aligned_cols=70 Identities=14% Similarity=0.252 Sum_probs=40.9
Q ss_pred eEEEEEeCCCCCC-----ccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCc-cccCCCCC
Q 010819 425 VISQIDLGSQGLK-----GYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSK 496 (500)
Q Consensus 425 ~l~~L~Ls~n~l~-----g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP-~~l~~l~~ 496 (500)
.|+.+.+.++.+. -.-+..|.++++|+.++|. +++. .|+.. +.. .+|+.|+|..| ++ .|+ .++.++ +
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~ 346 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-G 346 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-C
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-C
Confidence 4666777666554 1223456777777777777 3455 45443 333 77888877554 44 343 345555 5
Q ss_pred Ccc
Q 010819 497 LQL 499 (500)
Q Consensus 497 L~~ 499 (500)
|+.
T Consensus 347 L~~ 349 (401)
T 4fdw_A 347 IKE 349 (401)
T ss_dssp CCE
T ss_pred CCE
Confidence 654
No 165
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=67.14 E-value=25 Score=28.66 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.2
Q ss_pred CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeec
Q 010819 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (500)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l 317 (500)
..++|.+.+...+.|.+.++++--. ...|.++|++||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEE
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEe
Confidence 4589988887789999999988521 246889999999854
No 166
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=64.34 E-value=50 Score=32.55 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=52.3
Q ss_pred ceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEeeCCceEEEEeecCC
Q 010819 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (500)
Q Consensus 90 ~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~f~~~~~ 169 (500)
+.+.+.+ +.|.|.|.+.+--+ ..=.|...+...+. .. ......++|.+.+.++.+.+.+.....
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 4556666 68999999887533 23345556554333 11 233455678888899999999875433
Q ss_pred C-CceeeeeeeeecCC
Q 010819 170 D-PPVIASLEVQQIDP 184 (500)
Q Consensus 170 ~-~pfIn~iEl~~l~~ 184 (500)
+ .+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 3 58999999997664
No 167
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=63.09 E-value=30 Score=28.92 Aligned_cols=89 Identities=20% Similarity=0.345 Sum_probs=48.7
Q ss_pred CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeec-cceeeeccCCCccceeeeeeEeecCC--CcEEEE
Q 010819 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV-TRVDIFNSVGSFAAYSWHYVAKNLSS--TELTVK 349 (500)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l-~~~di~~~~g~~~~~~~~l~~l~l~~--n~L~~~ 349 (500)
..++|.+.+...+.|.+.+.++-- ....|.++|++||... ..+.. ..++...........+.|.. |.|++.
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~~~~~v~~-p~Tg~w~~w~~~~~~v~L~aG~ntI~l~ 113 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNIVKPSMDF-VSTGAWTTWNEAGIVANLNQGNNVIRAT 113 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEECC-CCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeEeeeEEEe-cCCCCCCeeEEEEEEEEECCCccEEEEE
Confidence 458898888778899999988841 1246889999999853 32222 12232211111111234554 455554
Q ss_pred ecCcchhhhhhccccccc
Q 010819 350 LVPVVGAALISGLENYAL 367 (500)
Q Consensus 350 l~~~~~~piLnalEi~~l 367 (500)
.....+.+-|..|++...
T Consensus 114 ~~~~~g~~niD~i~v~~~ 131 (144)
T 2w47_A 114 AIASDGGPNVDYLKVFSA 131 (144)
T ss_dssp ECSTTCCCEEEEEEEEEC
T ss_pred EeCCCCCEEEeEEEEEeC
Confidence 333333344666665443
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=59.13 E-value=12 Score=36.61 Aligned_cols=53 Identities=11% Similarity=0.191 Sum_probs=26.8
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSD 480 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~ 480 (500)
|+.+.+.++.++-.-...|.++.+|+.+.|..+ ++ .|++. +.. .+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 555666555555222344566666666666533 33 34332 333 5566555543
No 169
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=56.59 E-value=40 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=31.4
Q ss_pred CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeecc
Q 010819 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVT 318 (500)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l~ 318 (500)
..++|.+.+...+.|.+.+.++. ...+.|.++|++||....
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryan-----g~~~~r~~~l~VNG~~~~ 79 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGN-----GGTSARRATVVVNDSQIK 79 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEEC-----CSSSCCCEEEEETTEEEE
T ss_pred CEEEEEEECCCCeEEEEEEEEEC-----CCCCCeEEEEEECCeEee
Confidence 45889888877899999998873 112468899999998543
No 170
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=54.14 E-value=42 Score=27.96 Aligned_cols=40 Identities=10% Similarity=0.142 Sum_probs=30.5
Q ss_pred CceEEEEecCCCCcEEEEEEEEeeccCCCCCcceEEEEEECCeec
Q 010819 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (500)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~Ei~~~~~~~~~R~F~I~lng~~l 317 (500)
..++|...+...+.|.+.++++-- ....|..+|++||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANG-----GTANRNGSLVINGGSN 78 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTTTT
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCceEEEEECCEEc
Confidence 458888888778899999988741 1236889999999754
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=50.90 E-value=13 Score=36.80 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=36.9
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCccccCCCCCCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~ 499 (500)
|+.++|.. .++-.-...|.++++|+.++|..| ++ .|++. +.. .+|+.++|..+ ++ .+...+.++++|+.
T Consensus 322 L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 322 LVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp CCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred CCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 55555543 244222345666777777777655 44 44433 333 67777777654 22 33445666666653
No 172
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=49.63 E-value=1e+02 Score=26.15 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=31.9
Q ss_pred CceEEE-EecCCCCcEEEEEEEEeeccCC-----CCCcceEEEEEECCee
Q 010819 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSSV-----TKAGQRVFDILVNDKN 316 (500)
Q Consensus 273 ~~lt~~-~~v~~~~~y~v~lhF~Ei~~~~-----~~~~~R~F~I~lng~~ 316 (500)
+.++|. ..+...+.|.+.++|+.-.... .....|...|.+||..
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~ 96 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGP 96 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCC
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCce
Confidence 468898 8887789999999998632100 0113799999999975
No 173
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=43.43 E-value=29 Score=34.14 Aligned_cols=55 Identities=13% Similarity=0.329 Sum_probs=30.8
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQF 483 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l 483 (500)
|+.+.|..+ ++-.-...|.++++|+.+.|..+ ++ .|++. +.. ++|+.+++.+|..
T Consensus 313 L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 313 LKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred cCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 556666532 44222345667777777777543 44 45443 334 6777777776543
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=41.82 E-value=13 Score=36.72 Aligned_cols=69 Identities=13% Similarity=0.206 Sum_probs=48.3
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCC-cccc-CCccEEEccCCCCCccCcc-ccCCCCCCcc
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQL 499 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~-~l~~-~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~ 499 (500)
|+.+.+..+ +.-.-...|.++++|+.++|..+ ++ .|++ .+.. .+|+.++|..| ++ .|++ ++.++++|+.
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~ 370 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKK 370 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCE
Confidence 566777543 55233456889999999999754 65 5654 3445 89999999876 65 5654 6888888875
No 175
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=38.38 E-value=33 Score=33.34 Aligned_cols=71 Identities=15% Similarity=0.180 Sum_probs=49.5
Q ss_pred EEEEEeCCCCCCccCCcccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCcc-ccCCCCCCccC
Q 010819 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV 500 (500)
Q Consensus 426 l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L 500 (500)
++.+.+.. .+.-.-...|.++++|+.+.+.++.++ .|++. +.. .+|+.+.|..+ ++ .|.+ ++.++++|+.+
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTI 338 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCC
T ss_pred hccccccc-cceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEE
Confidence 55666643 344233346788999999999998887 56554 445 89999999765 55 5654 67788888753
No 176
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=38.36 E-value=19 Score=31.71 Aligned_cols=38 Identities=5% Similarity=0.073 Sum_probs=28.8
Q ss_pred CCCCeEEcccCCCCccCCCcccc-CCccEEEccCCC-CCc
Q 010819 448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTG 485 (500)
Q Consensus 448 ~~L~~L~Ls~N~l~G~iP~~l~~-~~L~~L~Ls~N~-l~G 485 (500)
-.|+.|||+++.++..=-..+.. ++|+.|+|+++. ++.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 46999999999987432234556 999999999985 654
No 177
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=26.90 E-value=50 Score=32.39 Aligned_cols=52 Identities=13% Similarity=0.346 Sum_probs=25.0
Q ss_pred ccccCCCCCeEEcccCCCCccCCCc-ccc-CCccEEEccCCCCCccCcc-ccCCCCCCc
Q 010819 443 KISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQ 498 (500)
Q Consensus 443 ~~~~L~~L~~L~Ls~N~l~G~iP~~-l~~-~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~ 498 (500)
.|.++.+|+.++|..+ ++ .|.+. +.. .+|+.+.|..+ ++ .|.+ ++.++++|+
T Consensus 306 aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALN 360 (394)
T ss_dssp TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCC
T ss_pred eecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCC
Confidence 4555566666665543 33 33332 333 55666666433 33 3433 455555554
No 178
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=21.47 E-value=3.6e+02 Score=22.61 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCCCceeEeecCCCccEEEEEEeeccCCCCCCCCCceEEEECCE
Q 010819 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGT 129 (500)
Q Consensus 86 ~g~~~~Y~~~v~~~~~ylvRl~F~y~~yd~~~~~~~F~v~~~~~ 129 (500)
.|..-+|++.+.+.|.|-|.+....+. .+ ..+.|.+++.
T Consensus 65 ~Gdwl~y~V~v~~aG~Y~i~~rvas~~-~g----~~i~l~vdg~ 103 (160)
T 2cdp_A 65 QGDYADYTIAVAQAGNYTISYQAGSGV-TG----GSIEFLVNEN 103 (160)
T ss_dssp TTCEEEEEEEESSCEEEEEEEEEEBSS-SS----CEEEEEEECS
T ss_pred CCCEEEEEEEcCCCcEEEEEEEEEcCC-CC----ceEEEEECCC
Confidence 355669999998899999998886543 22 4688888874
Done!