BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010821
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V8Q|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Amp
pdb|2V92|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Atp-Amp
pdb|2V9J|E Chain E, Crystal Structure Of The Regulatory Fragment Of Mammalian
Ampk In Complexes With Mg.Atp-Amp
pdb|2Y8L|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Two Adp
pdb|2Y8Q|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With One Adp
pdb|2Y94|E Chain E, Structure Of An Active Form Of Mammalian Ampk
pdb|2YA3|E Chain E, Structure Of The Regulatory Fragment Of Mammalian Ampk In
Complex With Coumarin Adp
pdb|4EAG|C Chain C, Co-Crystal Structure Of An Chimeric Ampk Core With Atp
pdb|4EAI|C Chain C, Co-Crystal Structure Of An Ampk Core With Amp
pdb|4EAJ|C Chain C, Co-Crystal Of Ampk Core With Amp Soaked With Atp
pdb|4EAK|C Chain C, Co-Crystal Structure Of An Ampk Core With Atp
pdb|4EAL|C Chain C, Co-Crystal Of Ampk Core With Atp Soaked With Amp
Length = 330
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 105/341 (30%), Positives = 159/341 (46%), Gaps = 52/341 (15%)
Query: 164 SVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVG 223
+ F+ +H Y+L+P S K+V D L VK+AF L G+ APLWD K FVG
Sbjct: 29 TTFMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVT-----NGVRAAPLWDSKKQSFVG 83
Query: 224 VLSASDFILILRELGNHGSNLTE-EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
+L+ +DFI IL + S L + ELE H I W+E YL DS +PLV
Sbjct: 84 MLTITDFINILHRY--YKSALVQIYELEEHKIETWRE--VYLQ---DSF-----KPLVCI 131
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
PN +L D ++ N++ +P+I S + L+I + ILK
Sbjct: 132 SPNASLFDAVSSLIRNKIHRLPVIDPESGNT-----LYILTHKRILK------------- 173
Query: 343 PILKLPICAIPVGTWVPKIGEP----NRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDD 398
LKL I P ++ K E +AM+R ++P+VD+
Sbjct: 174 -FLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE 232
Query: 399 NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSD 458
++DIY + D+ LA +K Y ++++S + +ALQ + + C +
Sbjct: 233 KGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQHRSHYF-------EGVLKCYLHE 282
Query: 459 TLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
TL ++ RL V RLV+V+ V+GIVSLSDI + L+
Sbjct: 283 TLEAIINRLVEAEVHRLVVVDEHD-VVKGIVSLSDILQALV 322
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 93/358 (25%), Positives = 168/358 (46%), Gaps = 49/358 (13%)
Query: 146 EAAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRL 205
++ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + S
Sbjct: 7 DSQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS--- 62
Query: 206 QGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYL 264
I APLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L
Sbjct: 63 --IVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERAL 117
Query: 265 N-RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIAS 323
Q+D+ RPL A K+L + +P+I QD + + ++
Sbjct: 118 GVDQLDTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSV 165
Query: 324 LSG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXX 381
L+ ILK V R LK+PI + + I + N + M P
Sbjct: 166 LTQYRILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDV 212
Query: 382 XXXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 441
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D +
Sbjct: 213 IQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF 269
Query: 442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
+ C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 270 -------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 319
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 167/357 (46%), Gaps = 49/357 (13%)
Query: 147 AAERISEADLQVSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQ 206
+ E++S + Q++ + FL++ T+Y++LP S +++ LD L VK++ ++L + S
Sbjct: 1 SQEKVS-IEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNS---- 55
Query: 207 GISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL-ETHTISAWKEGKAYLN 265
I APLWD +RF G+L+ +DFI +++ + SN + EL + + K+ + L
Sbjct: 56 -IVSAPLWDSKTSRFAGLLTTTDFINVIQY---YFSNPDKFELVDKLQLDGLKDIERALG 111
Query: 266 -RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASL 324
Q+D+ RPL A K+L + +P+I QD + + ++ L
Sbjct: 112 VDQLDTASIHPSRPLFEA---------CLKMLESRSGRIPLI---DQDEETHREIVVSVL 159
Query: 325 SG--ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXX 382
+ ILK V R LK+PI + + I + N + M P
Sbjct: 160 TQYRILKFVALNCRETH----FLKIPIGDLNI------ITQDNMKSCQMTTP---VIDVI 206
Query: 383 XXXXXXXXXSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 442
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D +
Sbjct: 207 QMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF- 262
Query: 443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
+ C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 263 ------EGVYTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 312
>pdb|2OOX|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOX|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-activated Protein Kinase Complexed With Amp
pdb|2OOY|G Chain G, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
pdb|2OOY|E Chain E, Crystal Structure Of The Adenylate Sensor From Amp-
Activated Protein Kinase Complexed With Atp
Length = 333
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 37/337 (10%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFV 222
+ F+ + T+Y++LP S +++ D+ L VK + +L L I APLWD +F
Sbjct: 14 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLL-----TLNNIVSAPLWDSEANKFA 68
Query: 223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
G+L+ +DF+ +++ S I+ + + R+++ A P +Y
Sbjct: 69 GLLTMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYV 121
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
P +L D + + +P+I + GS ++ + + ILK + +C +
Sbjct: 122 HPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET- 176
Query: 343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSL 402
+L++P+ + +GTW LA ++PIV+ +L
Sbjct: 177 AMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL 227
Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
L++Y D+ L +D Y++++LS + +AL ++ C +D L
Sbjct: 228 LNVYESVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDG 277
Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
+ + + + V RL +V+ K +EGI+SL+DI +++
Sbjct: 278 IFDAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 313
>pdb|2QR1|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QR1|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp
pdb|2QRC|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRC|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Amp
pdb|2QRD|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRD|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With Adp And Atp
pdb|2QRE|G Chain G, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
pdb|2QRE|E Chain E, Crystal Structure Of The Adenylate Sensor From
Amp-Activated Protein Kinase In Complex With
5-Aminoimidazole-4-Carboxamide 1-Beta-D- Ribofuranotide
(Zmp)
Length = 334
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 151/337 (44%), Gaps = 37/337 (10%)
Query: 163 VSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFV 222
+ F+ + T+Y++LP S +++ D+ L VK + +L L I APLWD +F
Sbjct: 15 IQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLL-----TLNNIVSAPLWDSEANKFA 69
Query: 223 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYA 282
G+L+ +DF+ +++ S I+ + + R+++ A P +Y
Sbjct: 70 GLLTMADFVNVIKYYYQSSSF-------PEAIAEIDKFRLLGLREVERKIGAIPPETIYV 122
Query: 283 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL 342
P +L D + + +P+I + GS ++ + + ILK + +C +
Sbjct: 123 HPMHSLMDACLAMSKSRARRIPLIDVDGETGS-EMIVSVLTQYRILKFIS---MNCKET- 177
Query: 343 PILKLPICAIPVGTWVPKIGEPNRRPLAMLRPXXXXXXXXXXXXXXXXXSIPIVDDNDSL 402
+L++P+ + +GTW LA ++PIV+ +L
Sbjct: 178 AMLRVPLNQMTIGTW---------SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTL 228
Query: 403 LDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHK 462
L++Y D+ L +D Y++++LS + +AL ++ C +D L
Sbjct: 229 LNVYESVDVMHLIQDGDYSNLDLS---VGEALLKRPANFDG-------VHTCRATDRLDG 278
Query: 463 VMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
+ + + + V RL +V+ K +EGI+SL+DI +++
Sbjct: 279 IFDAIKHSRVHRLFVVDENLK-LEGILSLADILNYII 314
>pdb|1Z0M|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
pdb|1Z0M|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta1 Subunit
Length = 96
Score = 82.4 bits (202), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P+ F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PLTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|1Z0N|A Chain A, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|B Chain B, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
pdb|1Z0N|C Chain C, The Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase
Length = 96
Score = 81.6 bits (200), Expect = 9e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P F W GG+ V+LSGSFN WS+L P F I +P G HQYKF VDG+W
Sbjct: 12 PTVFRWTGGGKEVYLSGSFNNWSKL----PXTRSQNNFVAILDLPEGEHQYKFFVDGQWT 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G VN ++ + +F
Sbjct: 68 HDPSEPIVTSQLGTVNNIIQVKKTDF 93
>pdb|2F15|A Chain A, Glycogen-Binding Domain Of The Amp-Activated Protein
Kinase Beta2 Subunit
Length = 96
Score = 75.9 bits (185), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 3/86 (3%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P W GG+ VF+SGSFN WS +P+ F I +P G HQYKF VDG+W
Sbjct: 11 PTVIRWSEGGKEVFISGSFNNWSTKIPLIKSH---NDFVAILDLPEGEHQYKFFVDGQWV 67
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNF 112
HD +P ++S+ G +N ++ + +F
Sbjct: 68 HDPSEPVVTSQLGTINNLIHVKKSDF 93
>pdb|2UV4|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
pdb|2UV5|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
C +TL ++ RL V RLV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHRLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2UV6|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
C +TL ++ RL V +LV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHQLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2UV7|A Chain A, Crystal Structure Of A Cbs Domain Pair From The Regulatory
Gamma1 Subunit Of Human Ampk In Complex With Amp
Length = 152
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
++P+VD+ ++DIY + D+ LA +K Y ++++S + +ALQ + Y L+
Sbjct: 54 ALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS---VTKALQ-HRSHYFEGVLK---- 105
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
C +TL ++ RL V LV+V+ + V+GIVSLSDI + L+
Sbjct: 106 --CYLHETLETIINRLVEAEVHGLVVVDE-NDVVKGIVSLSDILQALV 150
>pdb|2QLV|B Chain B, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|E Chain E, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 252
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 23 TVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD 82
++++P+ W GG V+++GSF +W +++ + P F + + PG H+++F VD
Sbjct: 1 SLMVPVEIRWQQGGSKVYVTGSFTKWRKMIGLIPDSDNNGSFHVKLRLLPGTHRFRFIVD 60
Query: 83 GEWRHDEHQPFISSEYG 99
E R + P + + G
Sbjct: 61 NELRVSDFLPTATDQMG 77
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALMRRSDDF-------EGV 93
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
C +D L +M+ + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIMDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140
>pdb|2NYE|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
pdb|2NYE|B Chain B, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 392 SIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451
S+PI+D+N L+++Y D+ L K Y ++LS + +AL D + +
Sbjct: 44 SVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLS---VGEALXRRSDDF-------EGV 93
Query: 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499
C +D L + + + V R +V+ R+ G+++LSDI K++L
Sbjct: 94 YTCTKNDKLSTIXDNIRKARVHRFFVVD-DVGRLVGVLTLSDILKYIL 140
>pdb|3NME|A Chain A, Structure Of A Plant Phosphatase
pdb|3NME|B Chain B, Structure Of A Plant Phosphatase
Length = 294
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 35 GGRSVFLSGSFNRWSELLPMSPVEGCPTVFQII-WSIPPGYHQYKFCVDGEWRHDEHQPF 93
G V +SG W + +P++ +G T F I+ +P G +YK+ +DGEW H+E +PF
Sbjct: 180 GFSRVEISGLDIGWGQRIPLTLGKG--TGFWILKRELPEGQFEYKYIIDGEWTHNEAEPF 237
Query: 94 I--SSEYGIVNTVLLATEPNFMHGINQGMPSGSNMDVDNEAFQRLVQI 139
I + + N + +P + G + S + ++ E +L+Q
Sbjct: 238 IGPNKDGHTNNYAKVVDDPTSVDGTTRERLSSEDPELLEEERSKLIQF 285
>pdb|3KH5|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk.
pdb|3LFZ|A Chain A, Crystal Structure Of Protein Mj1225 From
Methanocaldococcus Jannaschii, A Putative Archaeal
Homolog Of G-Ampk
Length = 280
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500
++++ P+ T+ K + + RRL +V AG+ +V GI++ DI F+ G
Sbjct: 10 QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGG 63
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 29/121 (23%)
Query: 217 SKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFP 276
S+ R VG+++++DFI +L GS+ ++T + + N +++ +
Sbjct: 186 SEGRLVGIITSTDFIKLL------GSDWAFNHMQTGNV------REITNVRME---EIMK 230
Query: 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGIL--KCVCRY 334
R ++ A D LK +A ++ N++ +P++ + + + GI+ K V +Y
Sbjct: 231 RDVITAKEGDKLKKIAEIMVTNDIGALPVVDENLR------------IKGIITEKDVLKY 278
Query: 335 F 335
F
Sbjct: 279 F 279
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 265 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPII 306
N ID + R ++ A P + LKDVAR ++ N +P++
Sbjct: 147 NEVIDDY---ITRDVIVATPGERLKDVARTMVRNGFRRLPVV 185
>pdb|3HFQ|A Chain A, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118.
pdb|3HFQ|B Chain B, Crystal Structure Of The Lp_2219 Protein From
Lactobacillus Plantarum. Northeast Structural Genomics
Consortium Target Lpr118
Length = 347
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 4/143 (2%)
Query: 27 PMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR 86
P V+ G+ FL+G + L G T I+ +IP Y +
Sbjct: 189 PRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248
Query: 87 HDEHQPFISSEYGIVNTVLLATEPNFMHGINQGMPSGS---NMDVD-NEAFQRLVQISDG 142
HD H ++S+ V T + I Q G + D+D EAF +V +
Sbjct: 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTD 308
Query: 143 SLTEAAERISEADLQVSRHRVSV 165
+ T A ++ L + + V+V
Sbjct: 309 NATLYARDLTSGKLSLLQKDVTV 331
>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From
Arabidopsis Thaliana
Length = 166
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 191 VKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELE 250
V +A +L E +R+ G P+ D + VG++S D +L L + GS TE +
Sbjct: 26 VDEALELLVE--NRITGF---PVID-EDWKLVGLVSDYD-LLALDSIS--GSGRTENSMF 76
Query: 251 THTISAWKEGKAYLNRQIDSHGKAF-----PRPLVYAGPNDNLKDVARKILHNEVATVPI 305
S WK A ++GK P PLV NL+D A+ +L + +P+
Sbjct: 77 PEVDSTWKTFNAVQKLLSKTNGKLVGDLMTPAPLVVE-EKTNLEDAAKILLETKYRRLPV 135
Query: 306 IHSSSQ 311
+ S +
Sbjct: 136 VDSDGK 141
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 222 VGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSH-GKAFPRPLV 280
+GV+ SDF + +LGN + + + A+K+GK + I SH G+A + L+
Sbjct: 41 IGVVGGSDFEKVQEQLGNDVVEKYDYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLI 100
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 43 GSFNRWSELLPMSPVEGC-PTVFQIIWSIPPGYHQYKFCVDGEWR 86
G+ N WS + ++ P ++Q+ ++P G +QYK +D W
Sbjct: 177 GAANNWSPDDDHTLLKKINPNLYQLSGTLPAGTYQYKIALDHSWN 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,796,845
Number of Sequences: 62578
Number of extensions: 605016
Number of successful extensions: 1408
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 25
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)