Query 010821
Match_columns 500
No_of_seqs 625 out of 4212
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 5.7E-34 1.2E-38 288.8 26.7 303 159-499 55-359 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.3E-25 9.2E-30 174.4 10.0 79 25-106 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 1.4E-18 3.1E-23 138.6 9.6 77 26-105 2-81 (82)
4 COG2524 Predicted transcriptio 99.7 2.1E-17 4.6E-22 152.6 13.2 120 360-500 173-292 (294)
5 KOG1616 Protein involved in Sn 99.7 7.2E-17 1.6E-21 157.9 9.6 90 22-111 76-165 (289)
6 COG2524 Predicted transcriptio 99.6 1.7E-15 3.8E-20 140.1 11.9 118 270-415 173-290 (294)
7 cd04641 CBS_pair_28 The CBS do 99.6 1.8E-14 3.8E-19 123.4 15.0 119 368-497 2-120 (120)
8 COG3448 CBS-domain-containing 99.6 7.4E-15 1.6E-19 138.2 9.9 127 360-499 246-372 (382)
9 COG3620 Predicted transcriptio 99.6 3E-14 6.4E-19 122.5 11.6 119 361-500 67-185 (187)
10 cd04603 CBS_pair_KefB_assoc Th 99.6 4.5E-14 9.9E-19 119.2 12.5 109 368-496 2-110 (111)
11 cd04619 CBS_pair_6 The CBS dom 99.5 1.4E-13 3.1E-18 116.7 14.5 111 369-496 3-113 (114)
12 cd04618 CBS_pair_5 The CBS dom 99.5 5E-14 1.1E-18 116.4 11.3 94 368-496 2-97 (98)
13 cd04617 CBS_pair_4 The CBS dom 99.5 2.9E-13 6.2E-18 115.5 14.8 114 368-496 2-117 (118)
14 TIGR00400 mgtE Mg2+ transporte 99.5 1.4E-14 3E-19 152.1 7.8 214 221-497 86-304 (449)
15 PRK10892 D-arabinose 5-phospha 99.5 1.2E-13 2.7E-18 139.6 14.0 119 360-497 203-323 (326)
16 COG3448 CBS-domain-containing 99.5 1.2E-13 2.6E-18 130.1 12.6 172 222-417 201-373 (382)
17 cd04593 CBS_pair_EriC_assoc_ba 99.5 6.2E-13 1.3E-17 112.7 14.5 112 368-497 2-115 (115)
18 cd04608 CBS_pair_PALP_assoc Th 99.5 2.4E-13 5.2E-18 117.4 11.8 113 368-498 3-124 (124)
19 cd04630 CBS_pair_17 The CBS do 99.5 1.1E-12 2.3E-17 111.2 14.7 111 368-496 2-113 (114)
20 cd04600 CBS_pair_HPP_assoc Thi 99.5 7.9E-13 1.7E-17 113.5 13.8 117 367-497 2-124 (124)
21 cd04801 CBS_pair_M50_like This 99.5 8.1E-13 1.8E-17 111.8 12.6 111 368-496 2-113 (114)
22 PRK11543 gutQ D-arabinose 5-ph 99.5 6.3E-13 1.4E-17 134.1 13.7 119 360-497 198-318 (321)
23 cd04605 CBS_pair_MET2_assoc Th 99.5 2.5E-12 5.4E-17 107.9 15.0 108 367-496 2-109 (110)
24 cd04623 CBS_pair_10 The CBS do 99.5 2.4E-12 5.1E-17 108.3 14.9 112 368-497 2-113 (113)
25 cd04639 CBS_pair_26 The CBS do 99.4 1.6E-12 3.6E-17 109.2 13.6 109 368-496 2-110 (111)
26 cd04607 CBS_pair_NTP_transfera 99.4 2.6E-12 5.7E-17 108.5 14.8 110 368-496 3-112 (113)
27 cd04614 CBS_pair_1 The CBS dom 99.4 1.3E-12 2.9E-17 107.4 12.6 95 368-497 2-96 (96)
28 cd04803 CBS_pair_15 The CBS do 99.4 2E-12 4.4E-17 110.6 14.0 116 368-497 2-122 (122)
29 cd04642 CBS_pair_29 The CBS do 99.4 1.5E-12 3.1E-17 112.5 13.2 124 368-496 2-125 (126)
30 cd04627 CBS_pair_14 The CBS do 99.4 1.6E-12 3.4E-17 111.8 13.2 119 368-495 2-121 (123)
31 cd04631 CBS_pair_18 The CBS do 99.4 2.1E-12 4.6E-17 111.0 13.5 116 368-497 2-125 (125)
32 PRK15094 magnesium/cobalt effl 99.4 1.5E-12 3.2E-17 128.8 14.0 120 360-500 68-190 (292)
33 cd04615 CBS_pair_2 The CBS dom 99.4 3.2E-12 6.9E-17 107.8 14.2 111 368-496 2-112 (113)
34 COG3620 Predicted transcriptio 99.4 1.1E-12 2.4E-17 112.8 11.2 117 273-417 69-185 (187)
35 COG2905 Predicted signal-trans 99.4 7.1E-13 1.5E-17 135.5 11.8 120 359-498 149-269 (610)
36 cd04618 CBS_pair_5 The CBS dom 99.4 1.4E-12 3E-17 107.8 11.5 95 278-413 2-97 (98)
37 cd04643 CBS_pair_30 The CBS do 99.4 3.2E-12 6.9E-17 108.2 14.0 114 368-497 2-116 (116)
38 cd04632 CBS_pair_19 The CBS do 99.4 3.3E-12 7E-17 110.5 14.2 116 368-496 2-127 (128)
39 cd04624 CBS_pair_11 The CBS do 99.4 4.4E-12 9.6E-17 106.7 14.7 110 368-496 2-111 (112)
40 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.3E-12 7.2E-17 107.6 13.9 112 368-496 2-113 (114)
41 cd04621 CBS_pair_8 The CBS dom 99.4 3.5E-12 7.6E-17 111.9 14.3 114 368-496 2-134 (135)
42 cd04629 CBS_pair_16 The CBS do 99.4 2.6E-12 5.6E-17 108.4 12.9 113 368-497 2-114 (114)
43 cd04589 CBS_pair_CAP-ED_DUF294 99.4 5.8E-12 1.3E-16 105.9 14.8 110 368-497 2-111 (111)
44 cd04626 CBS_pair_13 The CBS do 99.4 5.1E-12 1.1E-16 106.3 14.3 109 368-496 2-110 (111)
45 cd04588 CBS_pair_CAP-ED_DUF294 99.4 6E-12 1.3E-16 105.6 14.8 108 368-496 2-109 (110)
46 cd04595 CBS_pair_DHH_polyA_Pol 99.4 6.4E-12 1.4E-16 105.5 14.9 107 368-496 3-109 (110)
47 PRK07807 inosine 5-monophospha 99.4 1.9E-12 4.2E-17 135.5 14.3 115 360-498 90-204 (479)
48 cd04596 CBS_pair_DRTGG_assoc T 99.4 3.1E-12 6.7E-17 107.2 12.7 105 368-496 3-107 (108)
49 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 4.5E-12 9.7E-17 106.9 13.7 111 368-496 3-113 (114)
50 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 6.3E-12 1.4E-16 105.1 14.5 106 368-496 3-108 (109)
51 cd04636 CBS_pair_23 The CBS do 99.4 4.2E-12 9.2E-17 110.6 13.8 115 368-497 2-132 (132)
52 cd04590 CBS_pair_CorC_HlyC_ass 99.4 6.9E-12 1.5E-16 105.4 14.6 108 368-496 2-110 (111)
53 cd04641 CBS_pair_28 The CBS do 99.4 4.2E-12 9.2E-17 108.6 13.3 118 278-413 2-119 (120)
54 cd04635 CBS_pair_22 The CBS do 99.4 3.9E-12 8.4E-17 108.8 12.9 116 368-497 2-122 (122)
55 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 5.6E-12 1.2E-16 105.0 13.5 104 368-496 2-105 (106)
56 cd04586 CBS_pair_BON_assoc Thi 99.4 3.2E-12 6.9E-17 111.8 12.4 115 368-497 3-135 (135)
57 cd04620 CBS_pair_7 The CBS dom 99.4 6.3E-12 1.4E-16 106.4 13.7 110 368-496 2-114 (115)
58 cd04640 CBS_pair_27 The CBS do 99.4 3.5E-12 7.6E-17 110.2 12.3 112 368-496 2-125 (126)
59 cd04800 CBS_pair_CAP-ED_DUF294 99.4 1.2E-11 2.6E-16 103.9 14.8 109 368-496 2-110 (111)
60 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 1.2E-11 2.6E-16 103.8 14.3 109 368-496 2-110 (111)
61 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1.1E-11 2.4E-16 103.9 13.8 109 368-496 2-110 (111)
62 cd04625 CBS_pair_12 The CBS do 99.4 1.5E-11 3.4E-16 103.4 14.7 111 368-497 2-112 (112)
63 PRK05567 inosine 5'-monophosph 99.4 2.1E-11 4.6E-16 129.2 18.9 224 210-497 41-265 (486)
64 PRK14869 putative manganese-de 99.4 1.9E-11 4E-16 132.2 18.8 193 274-497 73-302 (546)
65 cd04587 CBS_pair_CAP-ED_DUF294 99.4 9.4E-12 2E-16 104.8 13.1 111 368-496 2-112 (113)
66 cd04627 CBS_pair_14 The CBS do 99.4 9.9E-12 2.2E-16 106.7 13.4 121 278-413 2-122 (123)
67 PRK01862 putative voltage-gate 99.4 5.3E-12 1.1E-16 137.1 14.2 123 360-499 448-571 (574)
68 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.6E-16 104.7 13.1 106 368-496 3-113 (114)
69 TIGR03520 GldE gliding motilit 99.4 9.1E-12 2E-16 129.0 14.6 118 360-500 192-312 (408)
70 cd04633 CBS_pair_20 The CBS do 99.4 1.1E-11 2.4E-16 105.8 12.8 114 368-497 2-121 (121)
71 cd04622 CBS_pair_9 The CBS dom 99.4 1.9E-11 4E-16 103.0 13.8 110 368-496 2-112 (113)
72 cd04603 CBS_pair_KefB_assoc Th 99.4 1E-11 2.2E-16 104.8 12.1 108 279-413 3-110 (111)
73 cd04585 CBS_pair_ACT_assoc2 Th 99.3 1.9E-11 4.1E-16 104.2 13.7 114 368-496 2-121 (122)
74 cd04601 CBS_pair_IMPDH This cd 99.3 9.8E-12 2.1E-16 104.1 11.7 106 368-496 3-109 (110)
75 cd04619 CBS_pair_6 The CBS dom 99.3 1.9E-11 4.1E-16 103.6 13.2 111 279-413 3-113 (114)
76 cd04606 CBS_pair_Mg_transporte 99.3 1.1E-11 2.4E-16 104.0 11.5 103 372-498 2-109 (109)
77 PRK07807 inosine 5-monophospha 99.3 7.5E-11 1.6E-15 123.7 20.1 206 209-484 43-251 (479)
78 cd04802 CBS_pair_3 The CBS dom 99.3 4.5E-11 9.8E-16 100.5 14.8 110 368-496 2-111 (112)
79 cd04609 CBS_pair_PALP_assoc2 T 99.3 3.1E-11 6.7E-16 100.9 13.6 109 368-497 2-110 (110)
80 cd04637 CBS_pair_24 The CBS do 99.3 2.7E-11 5.9E-16 103.6 13.4 115 368-497 2-122 (122)
81 cd04584 CBS_pair_ACT_assoc Thi 99.3 3.9E-11 8.4E-16 102.3 14.0 114 368-496 2-120 (121)
82 cd04599 CBS_pair_GGDEF_assoc2 99.3 3.3E-11 7.1E-16 100.0 13.1 103 368-496 2-104 (105)
83 PRK07107 inosine 5-monophospha 99.3 1.2E-11 2.6E-16 130.4 12.7 109 369-497 107-218 (502)
84 COG2239 MgtE Mg/Co/Ni transpor 99.3 2.7E-12 5.9E-17 132.3 7.7 208 176-418 43-255 (451)
85 PLN02274 inosine-5'-monophosph 99.3 2.5E-11 5.5E-16 128.2 15.0 111 365-498 106-221 (505)
86 cd04594 CBS_pair_EriC_assoc_ar 99.3 3.5E-11 7.5E-16 100.2 12.8 100 370-496 4-103 (104)
87 cd04617 CBS_pair_4 The CBS dom 99.3 2.4E-11 5.2E-16 103.6 12.0 111 278-413 2-117 (118)
88 cd04600 CBS_pair_HPP_assoc Thi 99.3 3.2E-11 6.9E-16 103.4 12.9 122 277-413 2-123 (124)
89 PRK14869 putative manganese-de 99.3 1.4E-11 3E-16 133.1 13.1 280 170-496 68-390 (546)
90 TIGR01302 IMP_dehydrog inosine 99.3 2.6E-11 5.6E-16 127.2 14.4 114 362-498 83-200 (450)
91 cd04610 CBS_pair_ParBc_assoc T 99.3 3.2E-11 6.9E-16 100.5 12.1 104 368-496 3-106 (107)
92 cd04630 CBS_pair_17 The CBS do 99.3 4.6E-11 1E-15 101.0 13.3 112 278-413 2-113 (114)
93 cd02205 CBS_pair The CBS domai 99.3 8.1E-11 1.7E-15 98.0 14.3 111 368-496 2-112 (113)
94 COG0517 FOG: CBS domain [Gener 99.3 8.8E-11 1.9E-15 99.4 14.7 111 365-495 5-117 (117)
95 KOG1764 5'-AMP-activated prote 99.3 1.4E-10 3.1E-15 118.3 18.1 197 182-418 164-361 (381)
96 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.1E-11 6.6E-16 126.5 13.5 113 361-498 90-202 (475)
97 PRK05567 inosine 5'-monophosph 99.3 3.6E-11 7.9E-16 127.4 14.2 115 361-498 89-204 (486)
98 cd04607 CBS_pair_NTP_transfera 99.3 7.3E-11 1.6E-15 99.6 13.4 109 279-413 4-112 (113)
99 cd02858 Esterase_N_term Estera 99.3 1.9E-11 4.2E-16 98.0 9.1 75 27-104 7-83 (85)
100 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 1.7E-10 3.7E-15 120.9 18.9 162 210-417 43-204 (475)
101 cd04614 CBS_pair_1 The CBS dom 99.3 7.9E-11 1.7E-15 96.8 12.8 94 278-413 2-95 (96)
102 cd04624 CBS_pair_11 The CBS do 99.3 1E-10 2.2E-15 98.3 13.5 110 278-413 2-111 (112)
103 TIGR00393 kpsF KpsF/GutQ famil 99.3 3.9E-11 8.4E-16 117.9 12.3 112 360-490 156-268 (268)
104 cd04634 CBS_pair_21 The CBS do 99.3 1.1E-10 2.4E-15 103.2 14.1 126 368-496 2-142 (143)
105 cd04591 CBS_pair_EriC_assoc_eu 99.3 7.5E-11 1.6E-15 98.6 12.2 100 368-497 3-105 (105)
106 cd04639 CBS_pair_26 The CBS do 99.3 9.5E-11 2.1E-15 98.4 12.9 109 278-413 2-110 (111)
107 cd04605 CBS_pair_MET2_assoc Th 99.3 1.3E-10 2.8E-15 97.4 13.5 108 277-413 2-109 (110)
108 cd04623 CBS_pair_10 The CBS do 99.3 1.4E-10 3E-15 97.5 13.6 111 278-413 2-112 (113)
109 cd04803 CBS_pair_15 The CBS do 99.3 7.8E-11 1.7E-15 100.7 12.3 120 278-413 2-121 (122)
110 cd04598 CBS_pair_GGDEF_assoc T 99.2 1.2E-10 2.6E-15 99.1 13.1 113 368-496 2-118 (119)
111 cd04643 CBS_pair_30 The CBS do 99.2 8.9E-11 1.9E-15 99.3 12.1 114 278-413 2-115 (116)
112 PTZ00314 inosine-5'-monophosph 99.2 6.4E-11 1.4E-15 125.1 13.5 113 363-498 100-217 (495)
113 TIGR00400 mgtE Mg2+ transporte 99.2 5.5E-11 1.2E-15 125.0 12.9 116 360-499 132-252 (449)
114 cd04642 CBS_pair_29 The CBS do 99.2 1.3E-10 2.8E-15 100.3 12.8 124 278-413 2-125 (126)
115 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 1.6E-10 3.5E-15 96.1 13.0 104 278-413 2-105 (106)
116 cd04631 CBS_pair_18 The CBS do 99.2 1.1E-10 2.4E-15 100.2 12.4 123 278-413 2-124 (125)
117 cd04608 CBS_pair_PALP_assoc Th 99.2 4.1E-11 8.9E-16 103.4 9.5 112 278-414 3-123 (124)
118 cd04593 CBS_pair_EriC_assoc_ba 99.2 1.8E-10 3.9E-15 97.5 13.3 111 278-413 2-114 (115)
119 cd04638 CBS_pair_25 The CBS do 99.2 2.4E-10 5.3E-15 95.2 13.9 104 368-496 2-105 (106)
120 COG4109 Predicted transcriptio 99.2 4.5E-11 9.8E-16 115.5 10.4 116 360-499 189-306 (432)
121 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 2.1E-10 4.5E-15 96.1 13.3 109 278-413 2-110 (111)
122 cd04585 CBS_pair_ACT_assoc2 Th 99.2 1.7E-10 3.7E-15 98.2 12.8 120 278-413 2-121 (122)
123 cd04626 CBS_pair_13 The CBS do 99.2 1.6E-10 3.6E-15 97.0 12.2 109 278-413 2-110 (111)
124 cd04588 CBS_pair_CAP-ED_DUF294 99.2 2.7E-10 5.8E-15 95.4 13.4 108 278-413 2-109 (110)
125 cd04801 CBS_pair_M50_like This 99.2 1.5E-10 3.3E-15 97.8 11.8 109 278-413 2-113 (114)
126 cd04629 CBS_pair_16 The CBS do 99.2 1.6E-10 3.5E-15 97.4 11.8 112 278-413 2-113 (114)
127 cd04596 CBS_pair_DRTGG_assoc T 99.2 2.3E-10 5E-15 95.7 12.6 105 278-413 3-107 (108)
128 cd04615 CBS_pair_2 The CBS dom 99.2 2.6E-10 5.7E-15 96.0 12.9 111 278-413 2-112 (113)
129 cd04620 CBS_pair_7 The CBS dom 99.2 2.6E-10 5.6E-15 96.4 12.9 110 278-413 2-114 (115)
130 cd04800 CBS_pair_CAP-ED_DUF294 99.2 2.2E-10 4.7E-15 96.2 12.3 109 278-413 2-110 (111)
131 cd04590 CBS_pair_CorC_HlyC_ass 99.2 2.6E-10 5.7E-15 95.7 12.8 109 278-413 2-110 (111)
132 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 3.3E-10 7.1E-15 95.4 13.3 111 278-413 3-113 (114)
133 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 3.4E-10 7.3E-15 94.5 13.2 106 278-413 3-108 (109)
134 cd04595 CBS_pair_DHH_polyA_Pol 99.2 3.3E-10 7.2E-15 95.0 13.0 107 278-413 3-109 (110)
135 PRK11543 gutQ D-arabinose 5-ph 99.2 1.6E-10 3.4E-15 116.6 12.9 115 274-414 202-318 (321)
136 TIGR01137 cysta_beta cystathio 99.2 2.6E-10 5.7E-15 120.6 15.2 118 360-498 336-453 (454)
137 cd04621 CBS_pair_8 The CBS dom 99.2 3E-10 6.5E-15 99.5 12.9 129 278-413 2-134 (135)
138 cd04586 CBS_pair_BON_assoc Thi 99.2 1.9E-10 4E-15 100.6 11.4 130 277-413 2-134 (135)
139 cd04636 CBS_pair_23 The CBS do 99.2 3E-10 6.4E-15 98.9 12.6 127 278-413 2-131 (132)
140 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 3.2E-10 6.9E-15 95.4 12.4 111 278-413 2-113 (114)
141 PRK15094 magnesium/cobalt effl 99.2 1E-09 2.2E-14 108.6 17.8 121 271-418 69-191 (292)
142 cd04587 CBS_pair_CAP-ED_DUF294 99.2 4.2E-10 9.2E-15 94.6 12.9 111 278-413 2-112 (113)
143 cd04637 CBS_pair_24 The CBS do 99.2 4.2E-10 9.1E-15 96.2 12.8 120 278-413 2-121 (122)
144 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 5.5E-10 1.2E-14 93.5 13.2 109 278-413 2-110 (111)
145 cd04622 CBS_pair_9 The CBS dom 99.2 5.1E-10 1.1E-14 94.2 12.8 111 278-413 2-112 (113)
146 cd04633 CBS_pair_20 The CBS do 99.2 3.1E-10 6.7E-15 96.8 11.5 119 278-413 2-120 (121)
147 cd04632 CBS_pair_19 The CBS do 99.2 4.7E-10 1E-14 96.9 12.7 124 278-413 2-127 (128)
148 PRK10892 D-arabinose 5-phospha 99.2 2.7E-10 5.9E-15 115.2 12.8 115 274-414 207-323 (326)
149 cd04625 CBS_pair_12 The CBS do 99.2 7.4E-10 1.6E-14 93.1 13.1 110 278-413 2-111 (112)
150 cd04602 CBS_pair_IMPDH_2 This 99.1 6.5E-10 1.4E-14 94.0 12.7 109 278-413 3-113 (114)
151 cd04802 CBS_pair_3 The CBS dom 99.1 9.4E-10 2E-14 92.4 13.3 110 278-413 2-111 (112)
152 cd04635 CBS_pair_22 The CBS do 99.1 5.4E-10 1.2E-14 95.5 11.8 120 278-413 2-121 (122)
153 COG0517 FOG: CBS domain [Gener 99.1 8.4E-10 1.8E-14 93.3 12.8 111 275-412 5-117 (117)
154 cd04589 CBS_pair_CAP-ED_DUF294 99.1 9.3E-10 2E-14 92.4 12.8 109 278-413 2-110 (111)
155 cd04592 CBS_pair_EriC_assoc_eu 99.1 6.9E-10 1.5E-14 97.1 12.1 110 368-481 2-118 (133)
156 TIGR01302 IMP_dehydrog inosine 99.1 1.6E-09 3.6E-14 113.7 16.8 167 209-415 33-200 (450)
157 TIGR03520 GldE gliding motilit 99.1 1.6E-09 3.4E-14 112.4 16.2 155 272-469 194-350 (408)
158 cd04640 CBS_pair_27 The CBS do 99.1 7.9E-10 1.7E-14 95.4 11.8 115 278-413 2-125 (126)
159 cd04609 CBS_pair_PALP_assoc2 T 99.1 9.6E-10 2.1E-14 91.8 12.0 108 278-413 2-109 (110)
160 PLN02274 inosine-5'-monophosph 99.1 9E-10 2E-14 116.5 14.4 165 210-417 54-223 (505)
161 cd04610 CBS_pair_ParBc_assoc T 99.1 1.4E-09 3E-14 90.5 12.7 105 277-413 2-106 (107)
162 PRK11573 hypothetical protein; 99.1 1.2E-09 2.5E-14 113.4 14.8 122 360-500 188-312 (413)
163 cd04599 CBS_pair_GGDEF_assoc2 99.1 1.3E-09 2.7E-14 90.4 12.2 102 278-412 2-103 (105)
164 cd04601 CBS_pair_IMPDH This cd 99.1 1E-09 2.2E-14 91.8 11.7 106 278-413 3-109 (110)
165 PRK07107 inosine 5-monophospha 99.1 8.3E-10 1.8E-14 116.5 13.2 110 279-414 107-218 (502)
166 cd02205 CBS_pair The CBS domai 99.1 2.5E-09 5.3E-14 89.0 13.6 111 278-413 2-112 (113)
167 cd04606 CBS_pair_Mg_transporte 99.1 1.6E-09 3.4E-14 90.8 12.2 102 282-414 2-108 (109)
168 COG2905 Predicted signal-trans 99.1 7.5E-10 1.6E-14 113.6 11.6 120 272-417 152-271 (610)
169 PTZ00314 inosine-5'-monophosph 99.1 2.1E-09 4.5E-14 113.7 14.9 163 209-414 49-216 (495)
170 cd04594 CBS_pair_EriC_assoc_ar 99.1 2.2E-09 4.8E-14 89.2 11.8 100 280-413 4-103 (104)
171 cd04634 CBS_pair_21 The CBS do 99.0 2.6E-09 5.5E-14 94.5 12.4 126 278-413 2-142 (143)
172 cd04584 CBS_pair_ACT_assoc Thi 99.0 3.1E-09 6.7E-14 90.5 12.5 119 278-413 2-120 (121)
173 cd04591 CBS_pair_EriC_assoc_eu 99.0 3.5E-09 7.6E-14 88.4 12.1 100 278-413 3-104 (105)
174 cd04598 CBS_pair_GGDEF_assoc T 99.0 3.6E-09 7.8E-14 89.9 11.4 113 278-413 2-118 (119)
175 PRK01862 putative voltage-gate 99.0 5.2E-09 1.1E-13 113.8 14.8 118 274-416 452-571 (574)
176 TIGR00393 kpsF KpsF/GutQ famil 99.0 3.5E-09 7.6E-14 104.0 12.0 108 274-407 160-268 (268)
177 COG4109 Predicted transcriptio 99.0 1.9E-08 4.2E-13 97.6 15.4 109 277-416 198-306 (432)
178 COG1253 TlyC Hemolysins and re 98.9 1.6E-08 3.4E-13 105.9 14.1 119 361-500 208-329 (429)
179 COG2239 MgtE Mg/Co/Ni transpor 98.9 7.4E-09 1.6E-13 107.1 11.0 115 360-498 133-252 (451)
180 cd04638 CBS_pair_25 The CBS do 98.9 3.7E-08 8E-13 81.9 12.4 104 278-413 2-105 (106)
181 PF00571 CBS: CBS domain CBS d 98.9 5.2E-09 1.1E-13 77.0 5.9 54 446-500 4-57 (57)
182 cd04592 CBS_pair_EriC_assoc_eu 98.8 3.1E-08 6.8E-13 86.5 10.9 113 278-399 2-118 (133)
183 PF00571 CBS: CBS domain CBS d 98.8 1E-08 2.3E-13 75.3 5.9 54 362-415 2-55 (57)
184 TIGR01137 cysta_beta cystathio 98.8 5.5E-08 1.2E-12 103.0 13.3 113 274-414 340-452 (454)
185 cd02688 E_set E or "early" set 98.8 3.5E-08 7.6E-13 78.3 8.0 72 27-100 5-78 (83)
186 TIGR01186 proV glycine betaine 98.7 4.9E-07 1.1E-11 92.2 17.9 108 368-499 251-358 (363)
187 cd02854 Glycogen_branching_enz 98.7 1E-07 2.2E-12 78.5 8.7 65 27-93 6-84 (99)
188 PRK11573 hypothetical protein; 98.7 8.1E-07 1.8E-11 92.3 16.9 166 167-385 184-349 (413)
189 PRK10070 glycine betaine trans 98.6 3.8E-07 8.2E-12 94.2 14.0 104 372-499 290-393 (400)
190 COG4535 CorC Putative Mg2+ and 98.6 1.2E-07 2.6E-12 87.4 8.6 120 360-500 68-190 (293)
191 KOG2550 IMP dehydrogenase/GMP 98.5 6E-07 1.3E-11 89.0 11.4 165 207-414 59-226 (503)
192 COG1253 TlyC Hemolysins and re 98.5 2.5E-06 5.5E-11 89.4 15.8 117 276-419 215-331 (429)
193 COG4536 CorB Putative Mg2+ and 98.5 8E-07 1.7E-11 87.5 10.7 122 360-500 201-325 (423)
194 KOG0474 Cl- channel CLC-7 and 98.5 3.7E-07 7.9E-12 94.8 7.8 149 348-497 564-745 (762)
195 KOG2550 IMP dehydrogenase/GMP 98.5 3.5E-07 7.6E-12 90.5 7.2 107 368-497 117-226 (503)
196 PF02922 CBM_48: Carbohydrate- 98.4 1.5E-07 3.3E-12 75.3 3.5 57 27-84 12-73 (85)
197 TIGR01186 proV glycine betaine 98.2 2.2E-05 4.7E-10 80.2 14.0 109 279-418 252-360 (363)
198 COG4536 CorB Putative Mg2+ and 98.1 2.6E-05 5.7E-10 77.0 12.3 131 168-336 198-328 (423)
199 COG4535 CorC Putative Mg2+ and 98.1 4.8E-05 1E-09 70.5 13.1 117 275-418 75-191 (293)
200 PRK10070 glycine betaine trans 98.1 4.9E-05 1.1E-09 78.6 13.3 106 281-417 289-394 (400)
201 cd02860 Pullulanase_N_term Pul 97.9 3.7E-05 8E-10 63.5 7.1 63 28-94 10-84 (100)
202 cd04597 CBS_pair_DRTGG_assoc2 97.9 2.4E-05 5.1E-10 66.1 5.8 54 360-413 59-112 (113)
203 cd04597 CBS_pair_DRTGG_assoc2 97.7 6.9E-05 1.5E-09 63.3 6.3 50 446-496 63-112 (113)
204 cd02855 Glycogen_branching_enz 97.7 0.00025 5.5E-09 59.0 9.5 68 28-96 23-97 (106)
205 smart00116 CBS Domain in cysta 97.7 0.0001 2.2E-09 50.7 5.9 47 451-498 2-48 (49)
206 COG0296 GlgB 1,4-alpha-glucan 97.7 8.2E-05 1.8E-09 79.8 7.2 66 26-93 36-109 (628)
207 KOG0474 Cl- channel CLC-7 and 97.7 0.00011 2.3E-09 77.0 7.6 142 272-414 585-745 (762)
208 smart00116 CBS Domain in cysta 97.6 0.00022 4.7E-09 49.0 6.1 47 369-415 2-48 (49)
209 PF00686 CBM_20: Starch bindin 97.6 0.00019 4.1E-09 58.8 6.5 56 26-81 2-68 (96)
210 cd05808 CBM20_alpha_amylase Al 97.6 0.00062 1.3E-08 55.6 9.3 45 35-81 13-63 (95)
211 cd05814 CBM20_Prei4 Prei4, N-t 97.5 0.00063 1.4E-08 58.2 9.3 57 26-82 3-67 (120)
212 PRK12568 glycogen branching en 97.4 0.00034 7.4E-09 76.8 8.0 64 27-93 139-210 (730)
213 PLN02447 1,4-alpha-glucan-bran 97.4 0.00035 7.6E-09 76.9 8.0 64 27-93 115-192 (758)
214 KOG0475 Cl- channel CLC-3 and 97.4 0.0013 2.9E-08 69.2 11.1 127 369-498 558-694 (696)
215 cd02856 Glycogen_debranching_e 97.3 0.0008 1.7E-08 55.9 7.2 53 28-84 11-67 (103)
216 PRK12313 glycogen branching en 97.3 0.00085 1.8E-08 74.0 9.1 67 27-95 39-112 (633)
217 cd05809 CBM20_beta_amylase Bet 97.3 0.002 4.3E-08 53.0 8.9 57 25-81 2-68 (99)
218 cd02852 Isoamylase_N_term Isoa 97.3 0.00091 2E-08 57.1 7.0 59 28-88 9-75 (119)
219 PRK14705 glycogen branching en 97.2 0.00068 1.5E-08 78.4 7.3 64 27-92 639-710 (1224)
220 cd05818 CBM20_water_dikinase P 97.2 0.0025 5.4E-08 51.7 8.3 62 26-90 2-75 (92)
221 cd05820 CBM20_novamyl Novamyl 97.1 0.0052 1.1E-07 51.0 10.0 65 25-91 2-85 (103)
222 TIGR03415 ABC_choXWV_ATP choli 97.1 0.006 1.3E-07 62.8 12.5 84 388-500 298-381 (382)
223 PRK14706 glycogen branching en 97.1 0.0012 2.6E-08 72.4 7.4 65 27-94 39-111 (639)
224 KOG0475 Cl- channel CLC-3 and 97.1 0.0078 1.7E-07 63.6 12.7 133 278-415 557-694 (696)
225 cd05811 CBM20_glucoamylase Glu 96.9 0.0093 2E-07 49.7 10.0 58 24-81 5-73 (106)
226 PRK05402 glycogen branching en 96.8 0.0031 6.7E-08 70.6 8.1 66 27-93 132-204 (726)
227 cd02853 MTHase_N_term Maltooli 96.8 0.0072 1.6E-07 48.2 7.9 61 28-94 10-72 (85)
228 cd05816 CBM20_DPE2_repeat2 Dis 96.7 0.019 4.2E-07 47.2 9.8 46 34-81 12-64 (99)
229 COG4175 ProV ABC-type proline/ 96.6 0.0094 2E-07 58.4 8.6 168 276-500 215-384 (386)
230 cd05807 CBM20_CGTase CGTase, C 96.6 0.013 2.9E-07 48.3 8.3 57 25-81 2-70 (101)
231 cd05817 CBM20_DSP Dual-specifi 96.5 0.011 2.4E-07 48.7 7.6 45 35-81 12-62 (100)
232 cd05810 CBM20_alpha_MTH Glucan 96.5 0.02 4.3E-07 46.9 8.9 54 26-81 1-64 (97)
233 cd05813 CBM20_genethonin_1 Gen 96.5 0.012 2.5E-07 48.0 7.4 54 26-81 3-62 (95)
234 PRK05402 glycogen branching en 96.4 0.007 1.5E-07 67.8 7.3 62 27-91 29-95 (726)
235 TIGR02402 trehalose_TreZ malto 96.3 0.01 2.3E-07 64.1 8.0 62 28-96 1-65 (542)
236 TIGR01515 branching_enzym alph 96.3 0.018 3.9E-07 63.2 9.7 66 27-94 29-102 (613)
237 cd05467 CBM20 The family 20 ca 96.2 0.024 5.3E-07 46.0 7.7 47 34-81 11-65 (96)
238 PF03423 CBM_25: Carbohydrate 95.8 0.031 6.7E-07 44.8 6.4 61 27-87 3-76 (87)
239 KOG0476 Cl- channel CLC-2 and 95.8 0.059 1.3E-06 58.3 10.0 62 356-417 585-648 (931)
240 cd05815 CBM20_DPE2_repeat1 Dis 95.3 0.12 2.6E-06 42.5 8.5 55 27-81 3-65 (101)
241 TIGR02104 pulA_typeI pullulana 95.1 0.056 1.2E-06 59.4 7.6 64 28-94 21-94 (605)
242 cd05806 CBM20_laforin Laforin 94.9 0.35 7.7E-06 40.6 10.1 51 31-81 10-74 (112)
243 PF11806 DUF3327: Domain of un 94.3 0.32 7E-06 41.6 8.8 84 26-110 2-115 (122)
244 PLN02960 alpha-amylase 94.3 0.044 9.5E-07 61.2 4.2 56 27-82 129-198 (897)
245 COG1125 OpuBA ABC-type proline 93.9 0.4 8.6E-06 46.0 9.1 112 368-497 188-308 (309)
246 PLN02316 synthase/transferase 93.7 0.27 5.8E-06 56.6 9.3 57 27-83 330-398 (1036)
247 PLN02950 4-alpha-glucanotransf 92.5 0.91 2E-05 52.0 11.1 67 24-90 7-89 (909)
248 TIGR02100 glgX_debranch glycog 92.4 0.34 7.3E-06 54.0 7.4 54 28-85 16-75 (688)
249 COG4175 ProV ABC-type proline/ 92.3 0.31 6.7E-06 48.2 6.0 92 285-416 292-383 (386)
250 PLN02316 synthase/transferase 92.0 0.42 9.1E-06 55.0 7.7 66 27-92 155-232 (1036)
251 TIGR02102 pullulan_Gpos pullul 91.9 0.4 8.6E-06 55.7 7.4 65 28-94 329-408 (1111)
252 PRK03705 glycogen debranching 91.4 0.38 8.2E-06 53.2 6.3 54 28-85 21-78 (658)
253 PRK10439 enterobactin/ferric e 90.6 1.2 2.6E-05 46.5 9.0 88 22-110 35-164 (411)
254 PLN02950 4-alpha-glucanotransf 90.6 1.8 3.8E-05 49.7 10.8 89 22-112 149-254 (909)
255 TIGR02103 pullul_strch alpha-1 89.6 1.6 3.4E-05 49.9 9.2 66 27-94 136-215 (898)
256 TIGR03415 ABC_choXWV_ATP choli 88.6 0.94 2E-05 46.8 6.2 47 368-416 334-380 (382)
257 COG1125 OpuBA ABC-type proline 85.5 2.7 5.8E-05 40.6 6.8 40 374-413 268-307 (309)
258 PLN03244 alpha-amylase; Provis 83.0 1.4 3.1E-05 48.9 4.4 67 16-82 121-201 (872)
259 PRK14510 putative bifunctional 82.9 4.1 9E-05 48.5 8.5 55 27-85 24-84 (1221)
260 cd02857 CD_pullulan_degrading_ 82.9 6.8 0.00015 32.5 7.7 58 24-81 16-79 (116)
261 PLN02877 alpha-amylase/limit d 79.0 4.9 0.00011 46.1 7.0 51 27-82 223-280 (970)
262 KOG0470 1,4-alpha-glucan branc 78.0 2 4.3E-05 47.0 3.4 41 28-69 115-157 (757)
263 KOG0476 Cl- channel CLC-2 and 72.2 4.7 0.0001 44.3 4.3 55 445-499 592-647 (931)
264 PF01357 Pollen_allerg_1: Poll 68.6 19 0.0004 28.3 6.0 61 23-88 11-77 (82)
265 COG3794 PetE Plastocyanin [Ene 67.1 18 0.00039 31.1 6.1 48 27-78 63-111 (128)
266 PF02903 Alpha-amylase_N: Alph 62.9 14 0.00031 31.1 4.8 69 22-90 19-99 (120)
267 KOG1263 Multicopper oxidases [ 61.4 9.7 0.00021 41.3 4.2 63 47-113 84-151 (563)
268 KOG2118 Predicted membrane pro 59.3 18 0.0004 38.7 5.8 113 362-494 207-324 (498)
269 PRK11388 DNA-binding transcrip 56.7 48 0.001 36.8 8.9 97 378-491 61-163 (638)
270 COG1559 Aminodeoxychorismate l 51.8 2.6E+02 0.0057 28.4 12.3 144 278-471 46-191 (342)
271 PF03370 CBM_21: Putative phos 50.7 47 0.001 27.8 5.8 53 36-88 33-105 (113)
272 PF05198 IF3_N: Translation in 47.9 37 0.00081 26.3 4.4 29 390-418 12-40 (76)
273 TIGR02375 pseudoazurin pseudoa 47.5 89 0.0019 26.4 7.0 47 27-78 24-71 (116)
274 TIGR03009 plancto_dom_2 Planct 46.5 24 0.00053 33.1 3.7 15 80-94 67-84 (210)
275 TIGR03503 conserved hypothetic 42.8 55 0.0012 33.6 5.9 42 40-84 152-195 (374)
276 PF11896 DUF3416: Domain of un 39.2 62 0.0013 29.8 5.2 40 46-88 55-99 (187)
277 PRK10301 hypothetical protein; 38.4 1.7E+02 0.0037 24.9 7.5 62 22-84 44-113 (124)
278 PF13473 Cupredoxin_1: Cupredo 36.5 36 0.00079 27.7 3.0 17 61-77 73-90 (104)
279 PF14347 DUF4399: Domain of un 36.5 66 0.0014 25.6 4.3 32 61-93 50-81 (87)
280 PRK11388 DNA-binding transcrip 36.1 1.4E+02 0.003 33.2 8.4 99 290-407 63-162 (638)
281 PRK10785 maltodextrin glucosid 34.6 1.3E+02 0.0027 33.3 7.7 63 22-84 17-87 (598)
282 PF07495 Y_Y_Y: Y_Y_Y domain; 29.6 45 0.00098 24.3 2.3 25 65-89 30-58 (66)
283 TIGR03102 halo_cynanin halocya 29.6 1.6E+02 0.0035 24.7 5.8 47 27-78 51-99 (115)
284 KOG2118 Predicted membrane pro 29.2 1E+02 0.0022 33.2 5.6 109 278-411 215-324 (498)
285 PF05198 IF3_N: Translation in 27.8 1.1E+02 0.0024 23.6 4.2 25 472-497 12-36 (76)
286 KOG0045 Cytosolic Ca2+-depende 26.9 59 0.0013 35.8 3.4 27 71-97 115-144 (612)
287 TIGR02657 amicyanin amicyanin. 26.8 1.5E+02 0.0033 23.0 4.9 48 27-78 20-69 (83)
288 COG2216 KdpB High-affinity K+ 25.9 90 0.0019 33.4 4.3 38 457-496 412-449 (681)
289 PF11797 DUF3324: Protein of u 23.9 2.6E+02 0.0057 24.2 6.4 51 34-90 70-126 (140)
290 cd00503 Frataxin Frataxin is a 21.2 54 0.0012 27.1 1.4 19 71-90 65-83 (105)
291 PF05738 Cna_B: Cna protein B- 21.0 2E+02 0.0044 21.0 4.5 28 60-88 25-54 (70)
292 smart00612 Kelch Kelch domain. 20.9 81 0.0018 20.6 2.1 37 39-75 2-38 (47)
293 PF04985 Phage_tube: Phage tai 20.7 3.2E+02 0.0069 24.4 6.5 48 38-92 99-148 (167)
294 PRK00446 cyaY frataxin-like pr 20.4 61 0.0013 26.8 1.5 25 62-90 58-82 (105)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=5.7e-34 Score=288.85 Aligned_cols=303 Identities=31% Similarity=0.564 Sum_probs=257.9
Q ss_pred HHHHHHHHHhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhc
Q 010821 159 SRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELG 238 (500)
Q Consensus 159 ~~~~i~~~l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~ 238 (500)
....++.|++.++||+.+|.+.+++++|..+++++||++|..+ +.+++|+||...++|+|++++.||+.++...+
T Consensus 55 ~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~-----~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~ 129 (381)
T KOG1764|consen 55 AVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQN-----GVRAAPLWDSKKQQFVGMLTITDFITVLLRYY 129 (381)
T ss_pred hhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhh-----ceeeeccccCccceeEEEEEHHHHHHHHHHhh
Confidence 6678899999999999999999999999999999999999999 99999999999999999999999999999887
Q ss_pred CCCCCC-ChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCce
Q 010821 239 NHGSNL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQ 317 (500)
Q Consensus 239 ~~~~~l-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~ 317 (500)
..+... ..+.++...+..|++..... +....++++.+.|..++.+++..+.+++++++||.| .+.+ .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~ 197 (381)
T KOG1764|consen 130 KSKSSLDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---E 197 (381)
T ss_pred ccCCcHHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---c
Confidence 642211 23445555555555542221 111344559999999999999999999999999994 5666 7
Q ss_pred EEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEc
Q 010821 318 LLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD 397 (500)
Q Consensus 318 liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd 397 (500)
+++++|++.|++++..+.+..+ ...++..++.++.+|+|. .+..+..++++.+|+++|..++++++||||
T Consensus 198 v~~ilt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~ 267 (381)
T KOG1764|consen 198 VLYILTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVD 267 (381)
T ss_pred eeeehhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEc
Confidence 9999999999999998766654 456788999999999996 688999999999999999999999999999
Q ss_pred CCCcEEEEEeHHHHHHHHHcccccccCccccc-HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEE
Q 010821 398 DNDSLLDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLV 476 (500)
Q Consensus 398 ~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~-v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~ 476 (500)
..|+.+|+++..|+..+...+.|..++ .+ +.+++..+. .-...+++|.++++|.+++++|..+++||+|
T Consensus 268 ~~g~~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~-------~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~ 337 (381)
T KOG1764|consen 268 ENGKKVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRP-------IRFEGVVTCRPTSTLAEVIDKLVAHRVHRLW 337 (381)
T ss_pred CCCceecceehhhhhhhhhcCccCccc---hhHHHHHhhhcc-------cccCccEEEeecchHHHHHHHHHhcCceEEE
Confidence 999999999999999999888776654 44 777665433 2234689999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHHhh
Q 010821 477 IVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 477 VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
|||+ +|.++|+||++||+.++.
T Consensus 338 VVd~-~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 338 VVDE-DGVLVGVISLSDILSYLV 359 (381)
T ss_pred EEcC-CCcEEEEeeHHHHHHHHH
Confidence 9995 799999999999999874
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=4.3e-25 Score=174.38 Aligned_cols=79 Identities=42% Similarity=0.907 Sum_probs=73.4
Q ss_pred eeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 010821 25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (500)
Q Consensus 25 ~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn~ 104 (500)
.+|++|+|+++|++|+|+|||++|++..||.+.. ++ |++++.||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 3799999999999999999999999878998853 34 99999999999999999999999999999999999999999
Q ss_pred EE
Q 010821 105 LL 106 (500)
Q Consensus 105 l~ 106 (500)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.77 E-value=1.4e-18 Score=138.58 Aligned_cols=77 Identities=34% Similarity=0.726 Sum_probs=68.8
Q ss_pred eeEEEEecCC-CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEe-eCCCCC-eeeCCCCCee
Q 010821 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN 102 (500)
Q Consensus 26 ~~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~-~d~~~~-~~~~~~g~~n 102 (500)
+|++|+|..+ +++|+|+|+||+|+. .+|.+. .+|.|++++.|++|.|+|||+|||.|. +||.++ +..|++|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 5899997766 599999999999984 689874 469999999999999999999999998 999998 5889999999
Q ss_pred eEE
Q 010821 103 TVL 105 (500)
Q Consensus 103 n~l 105 (500)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.74 E-value=2.1e-17 Score=152.63 Aligned_cols=120 Identities=19% Similarity=0.373 Sum_probs=110.4
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
+++++|.++++++.+++|+.+|.++|.+++++..||+|++ +++|++|.+|+..+..++.+ +..|+++|
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~------~~kV~~~M----- 240 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL------DAKVSDYM----- 240 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence 5677899999999999999999999999999999999865 99999999999998887743 57888855
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
.+.++++.+++.+.+|++.|..++++||.|+|. +|+++|+||+.|||+.|.+
T Consensus 241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence 789999999999999999999999999999996 7999999999999998864
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.69 E-value=7.2e-17 Score=157.85 Aligned_cols=90 Identities=36% Similarity=0.739 Sum_probs=83.9
Q ss_pred CCceeeEEEEecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCEEeeCCCCCeeeCCCCCe
Q 010821 22 DTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIV 101 (500)
Q Consensus 22 ~~~~~~~~f~~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~ 101 (500)
.....|++|+|.++++.|+|+|+|.+|...+++.+..+..|.|+.++.|++|.|+|||+|||+|++|++.|++.|..|+.
T Consensus 76 ~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn~ 155 (289)
T KOG1616|consen 76 REQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGNL 155 (289)
T ss_pred cccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCCc
Confidence 45678999999999999999999999999999988655556699999999999999999999999999999999999999
Q ss_pred eeEEEeccCC
Q 010821 102 NTVLLATEPN 111 (500)
Q Consensus 102 nn~l~v~~~~ 111 (500)
||++.|.+.+
T Consensus 156 ~N~i~v~~~~ 165 (289)
T KOG1616|consen 156 NNILEVQDPD 165 (289)
T ss_pred ccceEecCcc
Confidence 9999999887
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.63 E-value=1.7e-15 Score=140.06 Aligned_cols=118 Identities=19% Similarity=0.371 Sum_probs=103.9
Q ss_pred CCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc
Q 010821 270 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 349 (500)
Q Consensus 270 ~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v 349 (500)
..+..|.++++++.+++|+.+|+++|.+++++.+||++ ++ +++|++|..||.+.+.+.
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd----~d---k~vGiit~~dI~~aia~g--------------- 230 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD----DD---KIVGIITLSDIAKAIANG--------------- 230 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec----CC---ceEEEEEHHHHHHHHHcC---------------
Confidence 34556899999999999999999999999999999993 33 699999999999887642
Q ss_pred ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821 350 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 415 (500)
Q Consensus 350 ~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~ 415 (500)
....+|+++|.++++++..++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..+
T Consensus 231 ------~~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i 290 (294)
T COG2524 231 ------NLDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI 290 (294)
T ss_pred ------CccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence 222355667999999999999999999999999999999999999999999999999754
No 7
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.61 E-value=1.8e-14 Score=123.40 Aligned_cols=119 Identities=39% Similarity=0.706 Sum_probs=96.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.+|++.|.+++++.+||+|++|+++|+++.+|++.+...+.... ...++.+.+... .+|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~~~-------~~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALERR-------SQD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHhhc-------ccC
Confidence 5678999999999999999999999999998999999999999998654432211 123344432111 134
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++||+++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999995 6899999999999864
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.57 E-value=7.4e-15 Score=138.16 Aligned_cols=127 Identities=20% Similarity=0.365 Sum_probs=107.6
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
...++|+++++++++++++.+|.++|.+++++.+||+|++.+++|+|+.+|+.+-.....+.++. ++ .
T Consensus 246 tcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~ 313 (382)
T COG3448 246 TCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----R 313 (382)
T ss_pred cHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----C
Confidence 45677999999999999999999999999999999999999999999999998754433222221 11 1
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
.+...++|+.++.|+.++++..+.+-++.+.+.|.+||+|+ .|+++||||.+|++.++.
T Consensus 314 ~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 314 PPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence 12233588999999999999999999999999999999996 799999999999998764
No 9
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.56 E-value=3e-14 Score=122.46 Aligned_cols=119 Identities=20% Similarity=0.413 Sum_probs=100.9
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821 361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 440 (500)
Q Consensus 361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 440 (500)
+..+|..+++.+.+++++.+++++|.+++++.+||+++ ++++|-||..+|.+...++.. ++....+.++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e---~i~~~~vr~v------- 135 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGME---SIRSLRVREV------- 135 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcccc---chhhhhHHHH-------
Confidence 34559999999999999999999999999999999985 899999999999987654421 2335667764
Q ss_pred CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
|..++++++++.++..+-.++..++ .+.|++ +|+++||||+.||++++.|
T Consensus 136 ------M~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 136 ------MGEPFPTVSPDESLNVISQLLEEHP--AVLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------hcCCCCcCCCCCCHHHHHHHHhhCC--eEEEEe--CCceEEEEeHHHHHHHHhc
Confidence 5789999999999999888887775 477886 6999999999999998864
No 10
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=4.5e-14 Score=119.21 Aligned_cols=109 Identities=8% Similarity=0.221 Sum_probs=92.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+.+..... +...++.++ |
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~-------------~ 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND------YETLKVCEV-------------Y 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc------ccccChhhe-------------e
Confidence 367889999999999999989999999999999999999999998742211 112456654 4
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+|+++|.+++.+++||||+ +|+++|+||.+||++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~ 110 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLR 110 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhc
Confidence 567889999999999999999999999999995 699999999999986
No 11
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.55 E-value=1.4e-13 Score=116.70 Aligned_cols=111 Identities=19% Similarity=0.354 Sum_probs=95.1
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC
Q 010821 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 448 (500)
Q Consensus 369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~ 448 (500)
+.++.+++++.+|++.|.+.+...+||+|++|+++|+++..|+.+....... .....++.+++ .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence 5688999999999999999999999999999999999999999875533110 12246677755 5
Q ss_pred CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 449 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 449 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 68889999999999999999999999999995 689999999999975
No 12
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=5e-14 Score=116.44 Aligned_cols=94 Identities=19% Similarity=0.288 Sum_probs=84.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
.++++++++++.+|+++|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999976211
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~ 496 (500)
+.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+||++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILK 97 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhc
Confidence 567899999999999999999999999995 5 89999999999986
No 13
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.53 E-value=2.9e-13 Score=115.54 Aligned_cols=114 Identities=21% Similarity=0.324 Sum_probs=94.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.+|++.|..++...+||+|++|+++|+++..|+.+...... .+...++.+++..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~----------- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR----------- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence 5678999999999999999899999999998899999999999988654221 1224567765510
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+++++|.+++.+++||||+++ |+++|+||.+||++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 12688999999999999999999999999999632 69999999999875
No 14
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.52 E-value=1.4e-14 Score=152.11 Aligned_cols=214 Identities=14% Similarity=0.182 Sum_probs=157.6
Q ss_pred EEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHh---
Q 010821 221 FVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH--- 297 (500)
Q Consensus 221 ~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~--- 297 (500)
+..-++..|+.+++..+. .....+-+..++..+...+...+.++.+.+|.+|.++++++++++++.+|++.|.+
T Consensus 86 ~~~~l~~dd~~~ll~~l~---~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~ 162 (449)
T TIGR00400 86 MINEMNLDDVIDLLEEVP---ANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAK 162 (449)
T ss_pred HHHcCChhHHHHHHHhCC---HHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCC
Confidence 334466667776665442 11122334455556666667777888888899999999999999999999999975
Q ss_pred --cCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCC
Q 010821 298 --NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPS 375 (500)
Q Consensus 298 --~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~ 375 (500)
+++..++|++ +++ +++|+++.+|++.. . .+.++ +++|.+++++++++
T Consensus 163 ~~~~~~~v~Vvd---~~~---~l~GvV~l~dLl~a------~-------~~~~v------------~~im~~~~~~v~~~ 211 (449)
T TIGR00400 163 TKEDIYTLYVTN---ESK---HLKGVLSIRDLILA------K-------PEEIL------------SSIMRSSVFSIVGV 211 (449)
T ss_pred CccceeEEEEEC---CCC---eEEEEEEHHHHhcC------C-------CCCcH------------HHHhCCCCeeECCC
Confidence 4567889883 345 79999999998731 0 11223 44488888999999
Q ss_pred CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeC
Q 010821 376 ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCL 455 (500)
Q Consensus 376 ~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~ 455 (500)
+++.+|++.|.+++...+||+|++|+++|+||.+|++....+. ...+++ ....+++.
T Consensus 212 ~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~-------------~~~gv~~~ 268 (449)
T TIGR00400 212 NDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFY-------------MIAAVKPL 268 (449)
T ss_pred CCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHH-------------HhcCCCCC
Confidence 9999999999999999999999999999999999999876553 124544 22344445
Q ss_pred CCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 456 PSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 456 ~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+++++.+++.+|.+++...|+|.- +.|++| ..++..
T Consensus 269 ~~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 269 DDSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred cchhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 678889999999999998887763 456666 445443
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=1.2e-13 Score=139.56 Aligned_cols=119 Identities=13% Similarity=0.261 Sum_probs=103.5
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
+++++|.+ +++++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.++...+. .+.+.++.++|
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~im--- 275 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIADVM--- 275 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHHhc---
Confidence 67788987 8999999999999999999988888899998999999999999987654321 13346787754
Q ss_pred CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
.+++.++.+++++.+|+++|.+++++++||+| +++++|+||++||+++
T Consensus 276 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 ----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 67899999999999999999999999999998 5899999999999975
No 16
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.52 E-value=1.2e-13 Score=130.10 Aligned_cols=172 Identities=16% Similarity=0.286 Sum_probs=125.3
Q ss_pred EEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhH-HHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCC
Q 010821 222 VGVLSASDFILILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEV 300 (500)
Q Consensus 222 vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i 300 (500)
+| ++..|+-..|.++.+- -.++.++++.+--.. .....+.. ..-...++|+++++++.+++++.+|.++|.++++
T Consensus 201 vg-fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~--~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~i 276 (382)
T COG3448 201 VG-FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRM--GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRI 276 (382)
T ss_pred cC-CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHh--ccccHHHhcCccceecCCcCChHHHHHHHHHcCc
Confidence 45 7889999999887532 123455665432111 11111111 0111245799999999999999999999999999
Q ss_pred ceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHH
Q 010821 301 ATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSA 380 (500)
Q Consensus 301 ~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~e 380 (500)
+.+||+| +.. +++||++++|+++..... .-+.+..+ -.++++.+|+.++.++.++++..+
T Consensus 277 kaLPV~d---~~~---rl~GiVt~~dl~~~a~~~----------p~qrlr~~----~~~~vk~imt~~v~tv~pdtpa~~ 336 (382)
T COG3448 277 KALPVLD---EHR---RLVGIVTQRDLLKHARPS----------PFQRLRFL----RPPTVKGIMTTPVVTVRPDTPAVE 336 (382)
T ss_pred ccccccc---ccc---ceeeeeeHHHHhhccCcc----------hHHHhhcc----CCCcccccccCcceeecCCCcHHH
Confidence 9999993 344 799999999998632211 01111111 123677889999999999999999
Q ss_pred HHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 381 ALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 381 a~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
++-.+.+.+.+++||+|++|+++||||..|++..+..
T Consensus 337 lvp~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 337 LVPRLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred HHHHhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999999999975543
No 17
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.50 E-value=6.2e-13 Score=112.72 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=94.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.....+... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA------------- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence 46688999999999999999999999999999999999999999886543211 1123466543
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC--CeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~--g~liGiIS~~DIl~~ 497 (500)
..++.+|.+++++.+++++|.+++.+++||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 568999999999999999999999999999995 5 799999999999863
No 18
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.49 E-value=2.4e-13 Score=117.41 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.++.++.++++.|.+++++.+||+|++|+++|+++..|++.....+.. ..+.++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im------------- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL------------- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence 57789999999999999999999999999988999999999999875443321 1246788865
Q ss_pred CCCceEeCCCCCHHHHHHHHh---------cCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 448 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~---------~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
.+++.++.+++++.++.++|. +.+.+++||+|+ +|+++|+||.+||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 678999999999999999653 346788899985 69999999999999875
No 19
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.1e-12 Score=111.19 Aligned_cols=111 Identities=20% Similarity=0.292 Sum_probs=94.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.+++++.++++.|.+.+.+.+||+|++ |+++|+++.+|+++.+..... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------ 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence 46789999999999999998999999999987 899999999999874433211 11235677654
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||..||++
T Consensus 67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~ 113 (114)
T cd04630 67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFL 113 (114)
T ss_pred -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhc
Confidence 567899999999999999999999999999993 89999999999986
No 20
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.48 E-value=7.9e-13 Score=113.51 Aligned_cols=117 Identities=22% Similarity=0.392 Sum_probs=95.6
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc------CcccccHHHHHhcCCCC
Q 010821 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDS 440 (500)
Q Consensus 367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~ 440 (500)
+++.++.++.++.++++.|.+.+++.+||++++|+++|+++..|++........... .....++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-------- 73 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGD-------- 73 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHH--------
Confidence 367889999999999999999999999999988999999999999875543211000 011234554
Q ss_pred CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+|...+.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||.+|++++
T Consensus 74 -----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~ 124 (124)
T cd04600 74 -----IMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA 124 (124)
T ss_pred -----hccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence 34678999999999999999999999999999995 7999999999999863
No 21
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=8.1e-13 Score=111.80 Aligned_cols=111 Identities=19% Similarity=0.346 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++++++++.+|++.|.+++ .+.+||+|++|+++|+++..|++....... ...++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence 4678899999999999997665 889999998899999999999987654321 13566665521
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 124668999999999999999999999999995 689999999999875
No 22
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.46 E-value=6.3e-13 Score=134.10 Aligned_cols=119 Identities=13% Similarity=0.234 Sum_probs=103.5
Q ss_pred ccCCCCCCC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821 360 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 360 ~v~d~m~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
+|+++|.++ ++++++++++.+|++.|.+.+...+||+|++|+++|+|+..|+.+....+.. .+.++.+++
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~-----~~~~v~~im--- 269 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGA-----LTTPVNEAM--- 269 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCC-----cCCcHHHhc---
Confidence 577889887 9999999999999999998889999999999999999999999875543211 134577644
Q ss_pred CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
.+++.++.+++++.+|++.|.+++..++||||+ +|+++|+||++||+++
T Consensus 270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 678899999999999999999999999999995 6899999999999975
No 23
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=2.5e-12 Score=107.92 Aligned_cols=108 Identities=22% Similarity=0.449 Sum_probs=93.3
Q ss_pred CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 367 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 367 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
+++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..++++...... .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~------------- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDI------------- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHh-------------
Confidence 35778999999999999999999999999998899999999999987554321 235554
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
|..++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||+.||++
T Consensus 61 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 MTRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 3567889999999999999999999999999995 699999999999975
No 24
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2.4e-12 Score=108.34 Aligned_cols=112 Identities=22% Similarity=0.442 Sum_probs=94.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++....... .....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~------------- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM------------- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence 46678999999999999999999999999988999999999999875543211 01134666644
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.++++.|.+.+.+++||+++ |+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~--~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVDG--GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC--CEEEEEEEHHHhhcC
Confidence 568899999999999999999999999999993 899999999999863
No 25
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.6e-12 Score=109.20 Aligned_cols=109 Identities=21% Similarity=0.411 Sum_probs=93.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+...+||+|++|+++|+++..++.+...... ...++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM------------- 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence 4667899999999999998888999999998899999999999987654431 124566654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+||.+
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~ 110 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGE 110 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhc
Confidence 567889999999999999999999999999995 589999999999975
No 26
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.45 E-value=2.6e-12 Score=108.46 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=93.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
.+.++.++.++.++++.|.+.+.+.++|+|++|+++|+++.+|+.+....... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 64 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM------------- 64 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence 35678999999999999998999999999999999999999999875543211 134677655
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+++||||+ +|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 567889999999999999999999999999995 689999999999974
No 27
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.45 E-value=1.3e-12 Score=107.36 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=85.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
+++++.+++++.+|++.|.+.+++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 467899999999999999999999999999899999999999997621
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
.+.++.+++++.+++++|.+++.+++||+|+ +|+++|+||++||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 1567899999999999999999999999995 5899999999999863
No 28
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=2e-12 Score=110.62 Aligned_cols=116 Identities=17% Similarity=0.350 Sum_probs=95.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-----CcccccHHHHHhcCCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS 442 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-----~~~~~~v~~~l~~~~~~~~ 442 (500)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++.+.......... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence 46788999999999999999999999999988999999999999876543211100 01234566544
Q ss_pred cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL 122 (122)
T ss_pred -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999995 6899999999999863
No 29
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.5e-12 Score=112.54 Aligned_cols=124 Identities=21% Similarity=0.351 Sum_probs=93.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
.+.++++++++.+|++.|.+++++.+||+|++|+++|+++..|++.....+.... ..+..........-......|
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFTDSDGVK 77 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcccccccc
Confidence 3678999999999999999999999999999999999999999988654321100 011000000000000011245
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+|+++|.+++.+++||+|+ +++++|+||.+||++
T Consensus 78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 678999999999999999999999999999995 699999999999985
No 30
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.6e-12 Score=111.75 Aligned_cols=119 Identities=13% Similarity=0.251 Sum_probs=91.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+... .+..+.... . ......+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARS------FPGLDPLYP-I-PLRDLTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHh------ccchhhhhh-h-hhhhccc
Confidence 56788999999999999998899999999987 9999999999998755332110 011000000 0 0000014
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 495 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl 495 (500)
|..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 5678899999999999999999999999999995 68999999999974
No 31
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=2.1e-12 Score=110.97 Aligned_cols=116 Identities=18% Similarity=0.320 Sum_probs=94.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHccccccc-------CcccccHHHHHhcCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHI-------NLSEMTIHQALQLGQD 439 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~-------~~~~~~v~~~l~~~~~ 439 (500)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|+.....+...... .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSI------ 75 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHH------
Confidence 46788999999999999999999999999987 999999999999876543321000 0112345554
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
|..++++|.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 76 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~ 125 (125)
T cd04631 76 -------MTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA 125 (125)
T ss_pred -------hcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence 3567999999999999999999999999999995 5899999999999864
No 32
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.43 E-value=1.5e-12 Score=128.82 Aligned_cols=120 Identities=14% Similarity=0.408 Sum_probs=100.9
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+++++|++ ++++++.++++.++++.+.+.+++++||++++ ++++|+++.+|++....... ...++.+++
T Consensus 68 ~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~-- 139 (292)
T PRK15094 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL-- 139 (292)
T ss_pred EEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc--
Confidence 44566886 58999999999999999999999999999876 79999999999986543211 123456544
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
. +++++.+++++.++++.|.+++.+.+||||+ .|.++|+||+.||+..++|
T Consensus 140 -----------r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 140 -----------R-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 190 (292)
T ss_pred -----------C-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence 3 4668999999999999999999999999995 6889999999999999876
No 33
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=3.2e-12 Score=107.80 Aligned_cols=111 Identities=20% Similarity=0.352 Sum_probs=93.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..+.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....... +...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------- 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM------------- 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence 35678999999999999999999999999988999999999999874332211 2235666644
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++..++++.++++.|.+++.+++||+|+ +|+++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 567899999999999999999999999999995 689999999999975
No 34
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.43 E-value=1.1e-12 Score=112.82 Aligned_cols=117 Identities=20% Similarity=0.407 Sum_probs=98.7
Q ss_pred cccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821 273 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 352 (500)
Q Consensus 273 ~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 352 (500)
.+|..+++++.|++++.+|+++|.+++++.+||++ .+ +++|-+|.++|.+.+.+.. ..+..+
T Consensus 69 ~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~----~~---k~VGsItE~~iv~~~le~~-----------e~i~~~ 130 (187)
T COG3620 69 TIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE----ED---KVVGSITENDIVRALLEGM-----------ESIRSL 130 (187)
T ss_pred hhccCCeeEECchhhHHHHHHHHHHcCCccCceee----CC---eeeeeecHHHHHHHHhccc-----------cchhhh
Confidence 46999999999999999999999999999999993 25 7999999999998876532 223333
Q ss_pred cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
+++++|..+++++++++++..+-.++..+ .++.|+ ++|+++|+||..|++++...
T Consensus 131 -------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 131 -------RVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred -------hHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 56777999999999999999998888654 578888 68999999999999987643
No 35
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.43 E-value=7.1e-13 Score=135.46 Aligned_cols=120 Identities=23% Similarity=0.372 Sum_probs=106.9
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH-HcccccccCcccccHHHHHhcC
Q 010821 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA-KDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~-~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
.++++++..+++++++.+++.+|.+.|.+.+++++.++++++.+.||||++|+.... .++. -...+|+++
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~ev---- 219 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEV---- 219 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhh----
Confidence 367788999999999999999999999999999999999999999999999999744 3332 235777774
Q ss_pred CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
|+.+++++..++.+.+|+-+|.+.++++|||++ +|+++|+||..||++.+
T Consensus 220 ---------mT~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 220 ---------MTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF 269 (610)
T ss_pred ---------hccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence 588999999999999999999999999999998 59999999999999875
No 36
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.43 E-value=1.4e-12 Score=107.83 Aligned_cols=95 Identities=20% Similarity=0.332 Sum_probs=83.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
.++++.+++++.+|++.|.+++++++||++ ++++ +++|++|..|+++.+.
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~~~---~~~Givt~~Dl~~~~~------------------------- 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWD--SRKQ---QFVGMLTITDFILILR------------------------- 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEe--CCCC---EEEEEEEHHHHhhhee-------------------------
Confidence 468899999999999999999999999994 3346 7999999999985210
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~ 413 (500)
+.++.+++++.+|+++|.+++++++||+|++ |+++|++|.+|++.
T Consensus 52 -----------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 -----------LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK 97 (98)
T ss_pred -----------eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence 5679999999999999999999999999987 99999999999864
No 37
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.2e-12 Score=108.24 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=91.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-CcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.......... .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------ 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------ 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence 46789999999999999999999999999988999999999999876543211100 00134566644
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.+|++.|.+.+ .+||+|+ +|+++|+||.+|++++
T Consensus 70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~~ 116 (116)
T cd04643 70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILKA 116 (116)
T ss_pred -cCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhcC
Confidence 667889999999999999998865 5999995 7999999999999863
No 38
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.3e-12 Score=110.52 Aligned_cols=116 Identities=23% Similarity=0.418 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc--------CcccccHHHHHhcCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI--------NLSEMTIHQALQLGQ 438 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~--------~~~~~~v~~~l~~~~ 438 (500)
++.++.+++++.+|+++|.+.+.+.+||+|++|+++|+++..|+..++..... ... .....++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 75 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYD------ 75 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHH------
Confidence 46688999999999999999999999999999999999999999875432110 000 011234444
Q ss_pred CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeC-CCCeEEEEEehHHHHH
Q 010821 439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFK 496 (500)
Q Consensus 439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~-~~g~liGiIS~~DIl~ 496 (500)
+|..+++++.+++++.++++.|.+++.+.+||++. ++|+++|+||.+||++
T Consensus 76 -------~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 76 -------AMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred -------HhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 44678999999999999999999999999999952 3689999999999986
No 39
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=4.4e-12 Score=106.73 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=94.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.++.++.++++.|.+.+++.+||+|++|+++|+++..|+++.+.... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~------------- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI-----DLDTPVSEIM------------- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC-----CCccCHHHhc-------------
Confidence 4678899999999999999999999999998899999999999987655432 1234566643
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++...+||+|+ +|+++|+||.+||++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 567889999999999999999999999999995 699999999999975
No 40
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.43 E-value=3.3e-12 Score=107.59 Aligned_cols=112 Identities=19% Similarity=0.399 Sum_probs=94.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~------------- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM------------- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence 56789999999999999999899999999988999999999999876543211 1125677654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|...+.+.+||+|.+.++++|+||..||++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 6678999999999999999999999999999831489999999999985
No 41
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=3.5e-12 Score=111.85 Aligned_cols=114 Identities=15% Similarity=0.292 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc-------------------Ccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM 428 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~-------------------~~~~~ 428 (500)
+++++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... .....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45678999999999999999999999999999999999999999886542211000 00123
Q ss_pred cHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 429 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 429 ~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
++.+ +|..++.++.+++++.++++.|.+.+.+++||++ +|+++|+||.+||++
T Consensus 82 ~v~~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~ 134 (135)
T cd04621 82 VAED-------------IMTEEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICR 134 (135)
T ss_pred cHHH-------------hcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhh
Confidence 4554 4466788999999999999999999999999999 389999999999986
No 42
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.6e-12 Score=108.44 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=94.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.++.++.++++.|.+.+.+.+||+|++++++|+++..|+++.+....+.. ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~~~------------- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRDIM------------- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHHHh-------------
Confidence 4678899999999999999888899999999999999999999987543322111 1235666654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.++++.|.+++.+++||+| +|+++|+||.+||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD--DGKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE--CCEEEEEEEHHHHhcC
Confidence 56788999999999999999999999999999 3899999999999863
No 43
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.42 E-value=5.8e-12 Score=105.92 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
+++.++++.++.++++.|.+.+...++|+|+ |+++|+++..|+......... ..+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence 4567899999999999999889999999997 899999999999876543211 1245677654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.++++.|.+++.+.+||+| +++++|+||..|++++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence 56788999999999999999999999999999 4899999999999864
No 44
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=5.1e-12 Score=106.29 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..++++.++.++++.|.+.+.+.+||+|++|+++|+++..|+..+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFESF-----LEKKVFNIV------------- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhccc-----ccCcHHHHh-------------
Confidence 46788999999999999999999999999988999999999999875443211 134666654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.+++.++.+++++.+|++.|.+++..++||+| + |+++|+||+.||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVD-D-NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeE-C-CEEEEEEEhHHhcc
Confidence 56788999999999999999999999999999 3 89999999999974
No 45
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.42 E-value=6e-12 Score=105.56 Aligned_cols=108 Identities=24% Similarity=0.402 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+++.+||+++ |+++|+++..|+++....+. ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL------ELAKVKDVM------------- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc------cccCHHHHh-------------
Confidence 5678899999999999999999999999998 99999999999988654431 124566654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+||..||++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 567899999999999999999999999999995 689999999999975
No 46
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=6.4e-12 Score=105.47 Aligned_cols=107 Identities=24% Similarity=0.475 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++..+.++.++.+.|.+.+.+.+||+|+ |+++|+++..|+....... +...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~------------- 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM------------- 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence 5778999999999999999889999999998 9999999999998765332 1246677755
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+++++|.+++.+.+||+| +|+++|+||..||++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 56788999999999999999999999999999 589999999999975
No 47
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.42 E-value=1.9e-12 Score=135.55 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=101.2
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
++.++|.++++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+.... ...++.++|
T Consensus 90 Kv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM----- 154 (479)
T PRK07807 90 KSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM----- 154 (479)
T ss_pred ccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc-----
Confidence 44566888999999999999999999999999999999999999999999995320 124577654
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
..+++++.+++++.+|++.|.+++++++||||+ +++++|+||.+||++..
T Consensus 155 --------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 155 --------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRAT 204 (479)
T ss_pred --------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 778999999999999999999999999999995 68999999999999864
No 48
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.41 E-value=3.1e-12 Score=107.19 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=92.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.... .+.++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM------------- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence 567899999999999999999999999999999999999999997521 135677755
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 567889999999999999999999999999995 789999999999985
No 49
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.41 E-value=4.5e-12 Score=106.91 Aligned_cols=111 Identities=16% Similarity=0.349 Sum_probs=94.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..++.+++..... ....++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~~~------------- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVADVM------------- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHHhh-------------
Confidence 45678999999999999988888999999988999999999999987654321 1234677655
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+++++|..++.+.+||+|+ +++++|+||..||++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~ 113 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLR 113 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhc
Confidence 557788999999999999999999999999995 699999999999986
No 50
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.41 E-value=6.3e-12 Score=105.06 Aligned_cols=106 Identities=18% Similarity=0.369 Sum_probs=91.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..+.++.++.++++.|.+.++..+||+|++|+++|+++..|+...... ..++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~------------- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE---------AKSLEDIM------------- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc---------CCcHhHhh-------------
Confidence 46778999999999999999999999999988999999999999875422 13455544
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 567889999999999999999999999999995 689999999999975
No 51
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=4.2e-12 Score=110.55 Aligned_cols=115 Identities=17% Similarity=0.338 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC----------------cccccHH
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH 431 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~----------------~~~~~v~ 431 (500)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+............. +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999988999999999999999999999998765432110000 0001344
Q ss_pred HHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 432 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 432 ~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+ +|.+++.++.+++++.++++.|.+.+.+++||+| + |+++|+||.+|++++
T Consensus 82 ~-------------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 E-------------IMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVD-D-GKLVGIISRGDIIRS 132 (132)
T ss_pred H-------------hccCCceEECCCCcHHHHHHHHHHCCCCeeEEEE-C-CEEEEEEEHHHhhcC
Confidence 3 4467789999999999999999999999999999 3 999999999999864
No 52
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.41 E-value=6.9e-12 Score=105.39 Aligned_cols=108 Identities=18% Similarity=0.352 Sum_probs=91.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.++.++.+|++.|.+.+.+.+||++++ |+++|+++..|+.+....... ..++.+++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------ 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------ 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence 46789999999999999999899999999988 999999999999986654311 13444432
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++|+++
T Consensus 64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 36788999999999999999999999999995 699999999999975
No 53
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=4.2e-12 Score=108.56 Aligned_cols=118 Identities=21% Similarity=0.336 Sum_probs=91.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++++||++ +++ +++|+++.+|++.++...... ....++.+. .
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~---~~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~----~ 65 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVD---ENG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEA----L 65 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC---CCC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHH----H
Confidence 578999999999999999999999999993 345 799999999999765322110 001111110 0
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus 66 --~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 --ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred --hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 112235567889999999999999999999999999998899999999999874
No 54
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.9e-12 Score=108.84 Aligned_cols=116 Identities=20% Similarity=0.344 Sum_probs=93.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc-cccc----CcccccHHHHHhcCCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA-YAHI----NLSEMTIHQALQLGQDSYS 442 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~-~~~~----~~~~~~v~~~l~~~~~~~~ 442 (500)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|++....... .... .....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 72 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKI--------- 72 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHH---------
Confidence 4678999999999999999889999999998899999999999986421110 0000 0112445554
Q ss_pred cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
|..++.++..++++.++++.|.+++.+.+||+|+ +|+++|+||..||+++
T Consensus 73 ----~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 73 ----MSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA 122 (122)
T ss_pred ----hcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence 3667899999999999999999999999999995 6999999999999863
No 55
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.40 E-value=5.6e-12 Score=105.00 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.+++++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... .++.++ |
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~-------------~ 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDH-------------A 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhh-------------c
Confidence 4668899999999999999889999999998899999999999986421 234443 3
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+.++.+++++.++++.|.+++...+||+|+ +|+++|+||.+|+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIAD 105 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 556788999999999999999999999999995 689999999999975
No 56
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.2e-12 Score=111.81 Aligned_cols=115 Identities=21% Similarity=0.363 Sum_probs=93.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc------cc------------Cccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------HI------------NLSEMT 429 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~------~~------------~~~~~~ 429 (500)
++.++.++.++.++++.|.+.+++.+||+|++++++|+++..|+.+........ .. .....+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 577899999999999999999999999999889999999999998754322100 00 001233
Q ss_pred HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+.+ +|..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.||+++
T Consensus 83 v~~-------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VAD-------------VMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHH-------------HhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 444 4466789999999999999999999999999999 5999999999999863
No 57
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.40 E-value=6.3e-12 Score=106.43 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=89.6
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.++.++.++++.|.+.+ ...++|+| +|+++|+++..|++........ ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------ 64 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGEVM------------ 64 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHHhc------------
Confidence 4567899999999999998888 66777777 5899999999999876543211 1235666644
Q ss_pred cCCCceEeCCC--CCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~--~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.++ +++.+|+++|.+++.+.+||+|+ +|+++|+||++||++
T Consensus 65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 5577888876 78999999999999999999995 699999999999986
No 58
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=3.5e-12 Score=110.17 Aligned_cols=112 Identities=22% Similarity=0.435 Sum_probs=88.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH-----HHcccccccCcccccHHHHHhcCCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS 442 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~-----~~~~~~~~~~~~~~~v~~~l~~~~~~~~ 442 (500)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+... ...+. ..+...++.++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~im-------- 70 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADVM-------- 70 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHhc--------
Confidence 46789999999999999998999999999988999999999999852 11110 012245677755
Q ss_pred cccccCCCceE--e----CCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHH
Q 010821 443 PYELRSQRCQM--C----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 496 (500)
Q Consensus 443 ~~~im~~~~~~--v----~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~ 496 (500)
.++... + .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus 71 -----~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 71 -----TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred -----CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 333322 2 36899999999999999999999995 5 79999999999986
No 59
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.39 E-value=1.2e-11 Score=103.89 Aligned_cols=109 Identities=20% Similarity=0.387 Sum_probs=91.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++..+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+......... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence 5678899999999999999888999999997 999999999999864332211 1135566654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+++||+++ |+++|+||.+||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence 567889999999999999999999999999993 89999999999985
No 60
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.38 E-value=1.2e-11 Score=103.76 Aligned_cols=109 Identities=23% Similarity=0.348 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.++.++.+|++.|.+.+.+.+||+++ |+++|+++..|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM------------- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence 4567899999999999999888999999986 999999999999886644311 235677654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 567889999999999999999999999999995 689999999999975
No 61
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.38 E-value=1.1e-11 Score=103.94 Aligned_cols=109 Identities=24% Similarity=0.407 Sum_probs=92.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
+++.+.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.+....... ...++.++ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~-------------~ 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDV-------------M 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHh-------------c
Confidence 5678999999999999999888999999998 999999999999875543211 11244443 4
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||..||++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 110 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLR 110 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhh
Confidence 678999999999999999999999999999995 699999999999986
No 62
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.5e-11 Score=103.40 Aligned_cols=111 Identities=14% Similarity=0.313 Sum_probs=90.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
.+.++.+++++.++++.|.+.+...++|.+ +|+++|+++.+|+++....... .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------- 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGA---GVLDTTVRAIM------------- 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCC---chhcCCHHHHh-------------
Confidence 356789999999999999888887887775 5999999999999875543110 11235677755
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.+++++|.+++..++||+| +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 55788999999999999999999999999999 4899999999999863
No 63
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.37 E-value=2.1e-11 Score=129.18 Aligned_cols=224 Identities=17% Similarity=0.259 Sum_probs=148.9
Q ss_pred EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHH
Q 010821 210 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 289 (500)
Q Consensus 210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~ 289 (500)
..|++.+. .+.+|..++...+.+....+ .+. ..+++...++...... ..+..+..+++++.+++++.
T Consensus 41 ~~Piv~a~----m~~vT~~ela~ava~~GglG-~i~----~~~~~e~~~~~I~~vk----~~~dim~~~~v~i~~~~tv~ 107 (486)
T PRK05567 41 NIPLLSAA----MDTVTEARMAIAMAREGGIG-VIH----KNMSIEEQAEEVRKVK----RSESGVVTDPVTVTPDTTLA 107 (486)
T ss_pred CcCEEeCC----CCCcCHHHHHHHHHhCCCCC-Eec----CCCCHHHHHHHHHHhh----hhhhcccCCCeEeCCCCCHH
Confidence 47888653 45578888888776654321 110 0112222222211110 11224678899999999999
Q ss_pred HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CC
Q 010821 290 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RP 368 (500)
Q Consensus 290 ~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~ 368 (500)
+|+++|.+++++++||++ +++ +++|+++.+|+.... ....++ .++|. ++
T Consensus 108 ea~~~m~~~~~~~lpVvd---~~g---~lvGiVt~~DL~~~~------------~~~~~V------------~dim~~~~ 157 (486)
T PRK05567 108 EALALMARYGISGVPVVD---ENG---KLVGIITNRDVRFET------------DLSQPV------------SEVMTKER 157 (486)
T ss_pred HHHHHHHHhCCCEEEEEc---cCC---EEEEEEEHHHhhhcc------------cCCCcH------------HHHcCCCC
Confidence 999999999999999993 345 799999999986310 011223 34476 68
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC
Q 010821 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 448 (500)
Q Consensus 369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~ 448 (500)
++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++................|..
T Consensus 158 ~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a---------------- 221 (486)
T PRK05567 158 LVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA---------------- 221 (486)
T ss_pred CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe----------------
Confidence 8999999999999999999999999999999999999999999976432100000000111222
Q ss_pred CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 449 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 449 ~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
.+...+ .-.+.++.|.+.+++ ++|+|..+++..|+++.-+.++.
T Consensus 222 --ai~~~~--~~~e~a~~L~~agvd-vivvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 --AVGVGA--DNEERAEALVEAGVD-VLVVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred --ecccCc--chHHHHHHHHHhCCC-EEEEECCCCcchhHHHHHHHHHh
Confidence 122222 227788899999999 45777546888888877666654
No 64
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.37 E-value=1.9e-11 Score=132.18 Aligned_cols=193 Identities=17% Similarity=0.193 Sum_probs=135.1
Q ss_pred ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc----
Q 010821 274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI---- 349 (500)
Q Consensus 274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v---- 349 (500)
+|.++++++.+++++.+|+++|.+++++.+||++ +++ +++|++|..||++.+....... .+.....++
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD---EEG---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 4677899999999999999999999999999993 346 7999999999998776532100 000101111
Q ss_pred ------------------ccccccccC-cccCCCCCCC-ceEecCCCCHHHHHHHHHHCCCCEEEEEcCC----------
Q 010821 350 ------------------CAIPVGTWV-PKIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDN---------- 399 (500)
Q Consensus 350 ------------------~~l~i~~~~-~~v~d~m~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---------- 399 (500)
..+.++.-. ..+.+.+.+. ++.+... .+++..+.+.++++++|+...
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr---~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la 221 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDR---EDIQLAAIEAGVRLLIITGGAPVSEDVLELA 221 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCc---HHHHHHHHHcCCCEEEECCCCCCCHHHHHHH
Confidence 111111100 0111223333 4444333 344446778899999888643
Q ss_pred --CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEE
Q 010821 400 --DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLV 476 (500)
Q Consensus 400 --g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~ 476 (500)
..+.+++|..|.......-. ...+|.++| . +++.++++++++.++.+.|.+++.+++|
T Consensus 222 ~~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~P 282 (546)
T PRK14869 222 KENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRSYP 282 (546)
T ss_pred HhCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCceE
Confidence 25788888888877554321 136777754 6 7899999999999999999999999999
Q ss_pred EEeCCCCeEEEEEehHHHHHH
Q 010821 477 IVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 477 VVd~~~g~liGiIS~~DIl~~ 497 (500)
|||+ +|+++|+||.+|+++.
T Consensus 283 Vvd~-~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 283 VVDE-DGKVVGVISRYHLLSP 302 (546)
T ss_pred EEcC-CCCEEEEEEHHHhhcc
Confidence 9995 7999999999999874
No 65
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.37 E-value=9.4e-12 Score=104.81 Aligned_cols=111 Identities=15% Similarity=0.316 Sum_probs=91.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++..|++........ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~------------- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM------------- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence 4678899999999999999889999999997 999999999999753322111 11124666644
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+++||+++ +|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 567889999999999999999999999999995 699999999999975
No 66
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.37 E-value=9.9e-12 Score=106.74 Aligned_cols=121 Identities=16% Similarity=0.270 Sum_probs=92.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+++++++||++ .+++ +++|+++..|+++++.................+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 567899999999999999999999999994 3325 699999999999876543211000000000001
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.+.++|..++.++.+++++.+|++.|.+++.+.+||+|++++++|+||.+|+..
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~ 122 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL 122 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence 112346678899999999999999999999999999998899999999999853
No 67
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.37 E-value=5.3e-12 Score=137.09 Aligned_cols=123 Identities=19% Similarity=0.237 Sum_probs=103.9
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
+++|+|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ..+.++.++
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~di------ 517 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADY------ 517 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHh------
Confidence 5678898889999999999999999999999999999999999999999999874432211 112456664
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCC-CeEEEEEehHHHHHHhh
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~-g~liGiIS~~DIl~~l~ 499 (500)
|.+++.++++++++.+|+++|.+++.+++||||+++ ++++|+||++||++++.
T Consensus 518 -------m~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 518 -------AHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred -------ccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 467889999999999999999999999999999532 58999999999999864
No 68
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=1.2e-11 Score=104.68 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=88.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 444 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 444 (500)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|+...... ..++.+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~---------- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM---------- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence 4668899999999999999889999999997 7899999999998753211 24566654
Q ss_pred cccCCCceEeCC--CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 445 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 445 ~im~~~~~~v~~--~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+.++.. ++++.++++.|.+++.+.+||||+ +|+++|+||.+||++
T Consensus 64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 445566655 999999999999999999999995 689999999999975
No 69
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.36 E-value=9.1e-12 Score=129.05 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=101.3
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+++++|++ ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++...... ..++.+++
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~-- 261 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL-- 261 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence 56777986 68999999999999999999999999999864 6899999999998643321 13455543
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
+++.++++++++.++++.|.+++.|..+|+|+ .|.++|+||..||++.++|
T Consensus 262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence 46789999999999999999999999999995 7999999999999999876
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=105.84 Aligned_cols=114 Identities=18% Similarity=0.382 Sum_probs=92.2
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc------cCcccccHHHHHhcCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY 441 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~------~~~~~~~v~~~l~~~~~~~ 441 (500)
++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..++........... ..+...++.+
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSD--------- 71 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHH---------
Confidence 4678899999999999999999999999996 99999999999987544211100 0011234544
Q ss_pred CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+|..++.++.+++++.+++++|.+.+.+++||+| + |+++|+||.+|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 72 ----IMTRPVITIEPDTSVSDVASLMLENNIGGLPVVD-D-GKLVGIVTRTDILRY 121 (121)
T ss_pred ----HccCCceEECCCCcHHHHHHHHHHcCCCcccEEE-C-CEEEEEEEHHHhhcC
Confidence 3466889999999999999999999999999999 3 899999999999863
No 71
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.35 E-value=1.9e-11 Score=103.00 Aligned_cols=110 Identities=22% Similarity=0.395 Sum_probs=91.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH-HHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~-~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++ +....+.. ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~----~~~~~~~~~~------------ 64 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRD----PDTTTVGDVM------------ 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCC----cccCCHHHhc------------
Confidence 4678999999999999999999999999997 9999999999987 33332211 1123466644
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+.++.+++++.++++.|...+.+++||+|+ +|+++|+||..|+++
T Consensus 65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~ 112 (113)
T cd04622 65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLAR 112 (113)
T ss_pred -cCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhc
Confidence 567888999999999999999999999999995 689999999999976
No 72
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=1e-11 Score=104.77 Aligned_cols=108 Identities=14% Similarity=0.237 Sum_probs=89.0
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358 (500)
Q Consensus 279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 358 (500)
++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|+++.... . ....+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~---~------~~~~~---------- 57 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVD---EEN---KVLGQVTLSDLLEIGPN---D------YETLK---------- 57 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHhhccc---c------ccccC----------
Confidence 57889999999999999999999999993 345 79999999999863110 0 00112
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 58 --v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 58 --VCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred --hhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 34447778889999999999999999999999999998899999999999975
No 73
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.35 E-value=1.9e-11 Score=104.15 Aligned_cols=114 Identities=23% Similarity=0.383 Sum_probs=92.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccccc------CcccccHHHHHhcCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI------NLSEMTIHQALQLGQDSY 441 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~------~~~~~~v~~~l~~~~~~~ 441 (500)
++.++.++.++.++++.|.+.+...+||+|+ |+++|+++..|+............ .....++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSD--------- 71 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHH---------
Confidence 4678899999999999999999999999997 999999999999876543211000 001133443
Q ss_pred CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
+|.+++.++.+++++.++++.|.+.+.+++||+|+ +|+++|+||..||++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~ 121 (122)
T cd04585 72 ----IMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFR 121 (122)
T ss_pred ----hccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhh
Confidence 44668899999999999999999999999999995 699999999999986
No 74
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.35 E-value=9.8e-12 Score=104.09 Aligned_cols=106 Identities=21% Similarity=0.425 Sum_probs=89.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..+..+.++.++++.|.+.+...+||+|++|+++|+++.+++..... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~------------- 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM------------- 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence 5678899999999999999899999999998899999999999864311 135666654
Q ss_pred CCCceEeCC-CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~-~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+.++.. ++++.+++++|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 445566666 999999999999999999999995 699999999999985
No 75
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=1.9e-11 Score=103.56 Aligned_cols=111 Identities=20% Similarity=0.287 Sum_probs=90.9
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358 (500)
Q Consensus 279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 358 (500)
+.++.+++++.+|++.|.+++...+||++ +++ +++|+++..|+++.+..... .....++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd---~~g---~~~G~vt~~dl~~~~~~~~~------~~~~~~v--------- 61 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCD---PHG---KLAGVLTKTDVVRQMGRCGG------PGCTAPV--------- 61 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEehHHHHHHHhhcCC------CcccCCH---------
Confidence 56789999999999999999999999993 345 69999999999876532100 0112223
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..+++++.+++++.+|++.|.+++...+||+|++|+++|+|+++|+++
T Consensus 62 ---~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 62 ---ENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ---HHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 3347778899999999999999999999999999998899999999999864
No 76
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.34 E-value=1.1e-11 Score=104.00 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=87.5
Q ss_pred ecCCCCHHHHHHHHHHCC-----CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 372 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 372 v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.++++.. . .+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~~~------------ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSDIM------------ 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHHHh------------
Confidence 567889999999998776 4789999988999999999998752 1 134566654
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
..++.++.+++++.++++.|..++.+.+||+|+ +|+++|+||..||++.+
T Consensus 60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI 109 (109)
T ss_pred -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence 567899999999999999999999999999995 69999999999999864
No 77
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=7.5e-11 Score=123.67 Aligned_cols=206 Identities=14% Similarity=0.172 Sum_probs=142.0
Q ss_pred eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCC
Q 010821 209 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 285 (500)
Q Consensus 209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~ 285 (500)
...|++.+. ...+|..++...|.+.+.-+ .++ ++..+.+....... ...|..+++++.++
T Consensus 43 l~~Pi~sa~----Mdtvt~~~MAiaLAr~GGiGvih~nl--------~~~~q~~~l~~VKv-----~~iMi~~pvtv~~d 105 (479)
T PRK07807 43 TTIPLVVAN----MTAVAGRRMAETVARRGGLVVLPQDI--------PIDVVAEVVAWVKS-----RDLVFDTPVTLSPD 105 (479)
T ss_pred cccceeecC----CcchhHHHHHHHHHHCCCceEeeCCC--------CHHHHHHHHhhccc-----ccccccCCeEECCC
Confidence 457888642 55678888877776654110 223 23333333332211 22477889999999
Q ss_pred CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCC
Q 010821 286 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 365 (500)
Q Consensus 286 ~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m 365 (500)
+++.+|+++|.+++++.+||++ +++ +++|+||.+|+... . ...++ .++|
T Consensus 106 ~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~------~-------~~~~V------------~diM 154 (479)
T PRK07807 106 DTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV------D-------RFTQV------------RDVM 154 (479)
T ss_pred CCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC------c-------cCCCH------------HHhc
Confidence 9999999999999999999993 455 79999999998421 0 01223 4458
Q ss_pred CCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccc
Q 010821 366 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 445 (500)
Q Consensus 366 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 445 (500)
..+++++++++++.+|+++|.++++..+||+|++++++|+||.+||++....... .+.-....+..+
T Consensus 155 t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~-~~~~g~l~V~aa------------ 221 (479)
T PRK07807 155 STDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPA-VDAAGRLRVAAA------------ 221 (479)
T ss_pred cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCch-hhhhhccchHhh------------
Confidence 8899999999999999999999999999999988999999999999986544311 000011222222
Q ss_pred ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCe
Q 010821 446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 484 (500)
Q Consensus 446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~ 484 (500)
. .......+.++.|.+.+++. .++|..+|+
T Consensus 222 ------v--~~~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 222 ------V--GINGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred ------h--ccChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1 12234667888888888876 567754554
No 78
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=4.5e-11 Score=100.54 Aligned_cols=110 Identities=19% Similarity=0.379 Sum_probs=90.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.+++++.++.++++.|.+.+.+.+||+|+ ++++|+++..|++......... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~---~~~~~~~~~~------------- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLK---PREVPVGEVM------------- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCC---cccCCHHHhc-------------
Confidence 4677899999999999999989999999986 4999999999998754322110 1234566644
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.+++++|.+++.+.+||||+ ++++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence 567889999999999999999999999999994 49999999999975
No 79
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.33 E-value=3.1e-11 Score=100.92 Aligned_cols=109 Identities=19% Similarity=0.363 Sum_probs=89.3
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM------------- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence 4678899999999999999999999999997 999999999999986543211 0124566654
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..++.++.+++++.+++++|.+ . +.+|||++ +|+++|+||++||+++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 5678889999999999999988 3 34788885 6999999999999864
No 80
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.32 E-value=2.7e-11 Score=103.63 Aligned_cols=115 Identities=14% Similarity=0.230 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc-----CcccccHHHHHhcCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY 441 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~-----~~~~~~v~~~l~~~~~~~ 441 (500)
+++++.++.++.++++.|.+.+++.+||+|+ |+++|+++..++.+....... ... .....++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 71 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQ--------- 71 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHH---------
Confidence 4678999999999999999999999999996 999999999999875432100 000 000123444
Q ss_pred CcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 442 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 442 ~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+|..++.++.+++++.++++.|.+++...+||+|+ +++++|++|+.|++++
T Consensus 72 ----~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~ 122 (122)
T cd04637 72 ----IMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY 122 (122)
T ss_pred ----hhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence 34668999999999999999999999999999995 6899999999999864
No 81
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.32 E-value=3.9e-11 Score=102.34 Aligned_cols=114 Identities=19% Similarity=0.388 Sum_probs=93.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccc-----cCcccccHHHHHhcCCCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS 442 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~-----~~~~~~~v~~~l~~~~~~~~ 442 (500)
++.++++++++.+|++.|.+.+.+.+||+|++|+++|+++..++........... ......++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-------- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence 4678899999999999999899999999998899999999999987543211000 011234566654
Q ss_pred cccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 443 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 443 ~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++..++++.++++.|.+.+.+.+||+| +|+++|++|..||++
T Consensus 74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR 120 (121)
T ss_pred -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 389999999999986
No 82
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=3.3e-11 Score=100.04 Aligned_cols=103 Identities=17% Similarity=0.339 Sum_probs=88.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++..+.+++++.++++.|.+.+.+.+||+| +++++|+++..|+..... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~------------- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM------------- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence 466789999999999999988999999998 689999999999976321 23566544
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++...+||+| +|+++|+||..||+.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhcc
Confidence 56788999999999999999999999999999 399999999999873
No 83
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.31 E-value=1.2e-11 Score=130.36 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=93.7
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccc
Q 010821 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 445 (500)
Q Consensus 369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~ 445 (500)
++++++++++.+|+++|.+++++.+||+|+ +++++|+||..|+.... . ..+.++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--~------~~~~~V~dIMt~--------- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--M------SLDTKVKDFMTP--------- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--c------CCCCCHHHHhCC---------
Confidence 468999999999999999999999999996 58999999999996421 1 234678887621
Q ss_pred ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
..+++++.+++++.+|+++|.++++++|||||+ +++++|+||++||++.
T Consensus 170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH 218 (502)
T ss_pred --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence 137889999999999999999999999999995 6899999999999875
No 84
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.31 E-value=2.7e-12 Score=132.31 Aligned_cols=208 Identities=18% Similarity=0.256 Sum_probs=150.3
Q ss_pred CCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchh
Q 010821 176 LPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTIS 255 (500)
Q Consensus 176 ~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~ 255 (500)
+|...+.+++.. ++..++..++.+-....|.-...++-+.+-...+.-++..|.++++..+ +.+...+.|..++..
T Consensus 43 l~~~~r~~v~~l-l~~~~~~~v~~~l~~~~~~~ii~~~~~~~~~~~ie~m~~Dd~~~ll~el---p~~~~~~lL~~l~~~ 118 (451)
T COG2239 43 LPGRERVVVWRL-LPKEDAAEVLGELDDEVREEIIEALSDEELAAAIEELDIDDAADLLDEL---PDEVRDELLSLLDPE 118 (451)
T ss_pred CCHHHHHHHHHh-CCHhHHHHHHHhcCHhHHHHHHHhcCHHHHHHHHHhcCcHHHHHHHHhC---CHHHHHHHHHhCCHH
Confidence 444444444443 5555666666554221111111122222223344556666777776655 344445677777777
Q ss_pred HHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhc-----CCceeeEEecCCCCCCCceEEEEEehhhHHHH
Q 010821 256 AWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN-----EVATVPIIHSSSQDGSFPQLLHIASLSGILKC 330 (500)
Q Consensus 256 ~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~-----~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~ 330 (500)
....+...+.|+++.+|+.|..+++++.++.|+.+|+..+++. .+..+.|+| .++ +++|+++.++++.
T Consensus 119 ~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD---~~~---~L~Gvvsl~~Ll~- 191 (451)
T COG2239 119 ERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD---EKG---KLLGVVSLRDLLT- 191 (451)
T ss_pred HHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEEC---Ccc---ceEEEeeHHHHhc-
Confidence 7777788889999999999999999999999999999999853 468889993 445 7999999999982
Q ss_pred HHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHH
Q 010821 331 VCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 410 (500)
Q Consensus 331 l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~D 410 (500)
......+++ +|.+.++++.+++...++.+++.+++.-++||||++++++|+||..|
T Consensus 192 ------------a~~~~~i~~------------im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDD 247 (451)
T COG2239 192 ------------AEPDELLKD------------LMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDD 247 (451)
T ss_pred ------------CCcHhHHHH------------HhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHH
Confidence 122344444 48888999999999999999999999999999999999999999999
Q ss_pred HHHHHHcc
Q 010821 411 ITALAKDK 418 (500)
Q Consensus 411 i~~~~~~~ 418 (500)
++..+.+.
T Consensus 248 iidvi~eE 255 (451)
T COG2239 248 IIDVIEEE 255 (451)
T ss_pred HHHHHHHH
Confidence 99876543
No 85
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.31 E-value=2.5e-11 Score=128.15 Aligned_cols=111 Identities=14% Similarity=0.166 Sum_probs=97.7
Q ss_pred CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCC
Q 010821 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 441 (500)
Q Consensus 365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~ 441 (500)
|.++++++.+++++.+|+++|.+++++.+||+|+ +|+++|+||.+|+.... ..+.+|.++|
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIM------- 169 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVM------- 169 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHh-------
Confidence 5568899999999999999999999999999987 48999999999997532 1246788876
Q ss_pred CcccccCCC--ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 442 SPYELRSQR--CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 442 ~~~~im~~~--~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
.+. ++++.+++++.+|+++|.+++.+++||||+ +++++|+||++||++++
T Consensus 170 ------t~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 170 ------TSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK 221 (505)
T ss_pred ------ccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 433 889999999999999999999999999995 68999999999999876
No 86
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.31 E-value=3.5e-11 Score=100.17 Aligned_cols=100 Identities=17% Similarity=0.248 Sum_probs=86.5
Q ss_pred eEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCC
Q 010821 370 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 449 (500)
Q Consensus 370 ~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~ 449 (500)
+++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|+.... ..++.++ |..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~-----------~~~~~~~-------------~~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT-----------YGDVVDY-------------IVR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc-----------ccchhhh-------------hhc
Confidence 46889999999999999999999999997 9999999999997531 1234443 355
Q ss_pred CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 450 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 450 ~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.+.++.+++++.++++.|.+++...+||+| +|+++|+||.+||++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 489999999999975
No 87
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.4e-11 Score=103.57 Aligned_cols=111 Identities=23% Similarity=0.384 Sum_probs=89.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.++++..+||++ +++ +++|+++..||++....... ....++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~~-------- 60 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD---EDG---DLVGVVSRKDLLKASIGGAD-------LQKVPV-------- 60 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHcCCC-------ccCCCH--------
Confidence 578899999999999999999999999993 335 69999999999986542110 001122
Q ss_pred CcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~ 413 (500)
+++|.+ ++.++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++
T Consensus 61 ----~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 61 ----GVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred ----HHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 233653 68899999999999999999999999999987 69999999999865
No 88
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.31 E-value=3.2e-11 Score=103.43 Aligned_cols=122 Identities=20% Similarity=0.363 Sum_probs=94.6
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
++++++.+++++.++++.|.+++++++||++ +++ +++|+++..++++++...... .....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD---GDR---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC---CCC---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 4678899999999999999999999999993 335 799999999998765432110 0000000 001
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
....++++|.++++++.+++++.+++++|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 111345668788999999999999999999999999999998999999999999874
No 89
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.31 E-value=1.4e-11 Score=133.13 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=174.7
Q ss_pred ccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhh
Q 010821 170 HTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEEL 249 (500)
Q Consensus 170 ~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l 249 (500)
.++.|++- .++++++.+.++.+|++.|.++ ++..+||.|.+ ++++|++|..|+...+...... +.+
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~-----~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~------~~~ 133 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDEN-----NVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDP------EIL 133 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHc-----CCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcch------hhh
Confidence 35666653 4789999999999999999999 99999999954 7999999999999866543210 011
Q ss_pred cc--cchhHHHHHHHhhcc-cc------CC------------CCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEec
Q 010821 250 ET--HTISAWKEGKAYLNR-QI------DS------------HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHS 308 (500)
Q Consensus 250 ~~--~~i~~~~~~~~~~~~-~~------~~------------~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~ 308 (500)
.. .++..+.+....... .. .+ ........++.+.....+ ...+.+.+++.+.|..+
T Consensus 134 ~~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~---~~~ai~~~~~~lIlt~g 210 (546)
T PRK14869 134 SKSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDI---QLAAIEAGVRLLIITGG 210 (546)
T ss_pred hhcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHH---HHHHHHcCCCEEEECCC
Confidence 11 111222111110000 00 00 000112234444433333 33567788999988843
Q ss_pred CCC---------CCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-CCceEecCCCCH
Q 010821 309 SSQ---------DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASL 378 (500)
Q Consensus 309 d~~---------~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~~~~~v~~~~~l 378 (500)
..- .. .+.+|.|..|.......-. ... +++++|. ++++++++++++
T Consensus 211 ~~~~~~v~~la~~~---~i~ii~t~~dt~~t~~~l~---------~~~------------~V~~iM~~~~~~~~~~~~~~ 266 (546)
T PRK14869 211 APVSEDVLELAKEN---GVTVISTPYDTFTTARLIN---------QSI------------PVSYIMTTEDLVTFSKDDYL 266 (546)
T ss_pred CCCCHHHHHHHHhC---CCeEEEecccHHHHHHHhh---------cCC------------CHHHhccCCCcEEECCCCcH
Confidence 110 11 3778888888776544211 122 3455598 889999999999
Q ss_pred HHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc--ccCcc-------cccHHHHHhcCCCCCCcccccCC
Q 010821 379 SAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA--HINLS-------EMTIHQALQLGQDSYSPYELRSQ 449 (500)
Q Consensus 379 ~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--~~~~~-------~~~v~~~l~~~~~~~~~~~im~~ 449 (500)
.++.+.|.+++++.+||+|++|+++|++|.+|++.....+..- ..... +..+.+++ +.+...++|..
T Consensus 267 ~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~ii----DHH~~~~~~~~ 342 (546)
T PRK14869 267 EDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEII----DHHRLGDIQTS 342 (546)
T ss_pred HHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEe----cCCccCCCCCC
Confidence 9999999999999999999999999999999999854431100 00000 00000011 01111234555
Q ss_pred CceEe---CCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 450 RCQMC---LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 450 ~~~~v---~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.++.+ ....+...+.+.|.+.++...|++. +..+.||+|-++.|+
T Consensus 343 ~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~ 390 (546)
T PRK14869 343 NPIFFRNEPVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFK 390 (546)
T ss_pred CCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCcc
Confidence 54444 3467777899999999998888876 457888888877665
No 90
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.30 E-value=2.6e-11 Score=127.24 Aligned_cols=114 Identities=18% Similarity=0.343 Sum_probs=99.5
Q ss_pred CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCC
Q 010821 362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 438 (500)
Q Consensus 362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~ 438 (500)
++.|.++++++.+++++.+++++|.+++++++||+|++ ++++|+|+.+|++.... ...++.+++
T Consensus 83 ~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm---- 149 (450)
T TIGR01302 83 ENGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVM---- 149 (450)
T ss_pred cCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhh----
Confidence 44466789999999999999999999999999999987 79999999999975321 135677755
Q ss_pred CCCCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 439 DSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 439 ~~~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
. .+++++.+++++.++++.|.+++.+.+||||+ +|+++|+||+.||++.+
T Consensus 150 ---------~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 ---------TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR 200 (450)
T ss_pred ---------CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence 5 48999999999999999999999999999995 79999999999999864
No 91
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=3.2e-11 Score=100.49 Aligned_cols=104 Identities=15% Similarity=0.404 Sum_probs=89.8
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++..+.++.++++.|.+.+...+||+|+ ++++|+++..|++.. . ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~---~-------~~~~~~~~~------------- 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK---D-------PDETVEEIM------------- 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc---C-------ccccHHHhC-------------
Confidence 5678999999999999998888889999987 999999999999752 1 124566644
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+++||+++ +|+++|+|+..||++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~ 106 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIR 106 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhc
Confidence 567888999999999999999999999999995 689999999999986
No 92
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.30 E-value=4.6e-11 Score=101.03 Aligned_cols=112 Identities=17% Similarity=0.269 Sum_probs=90.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ .+++ +++|+++.+|+++++...... ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v-------- 62 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK--RRES---DAYGIVTMRDILKKVVAEGRD------PDRVNV-------- 62 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCC---cEEEEEehHHHHHHHHhCCCC------CCccCH--------
Confidence 567899999999999999999999999994 2325 699999999999866432110 011223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+++
T Consensus 63 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 63 ----YEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred ----HHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 3447778899999999999999999999999999987 99999999999874
No 93
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.30 E-value=8.1e-11 Score=98.03 Aligned_cols=111 Identities=25% Similarity=0.472 Sum_probs=92.7
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++.+|+........... ...+.++ |
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~-------------~ 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDV-------------M 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHH-------------h
Confidence 4567889999999999999988999999998899999999999998665432111 1114443 3
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+|+..|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 112 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILR 112 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhc
Confidence 567888999999999999999999999999995 699999999999986
No 94
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.29 E-value=8.8e-11 Score=99.40 Aligned_cols=111 Identities=25% Similarity=0.443 Sum_probs=94.3
Q ss_pred CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 444 (500)
Q Consensus 365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 444 (500)
|...++++.++.++.+|...|.++++..+||++. ++++|++|.+|+.+......... .++.++
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~v----------- 67 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKEV----------- 67 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHHh-----------
Confidence 4467899999999999999999999999999974 47999999999998766542211 146654
Q ss_pred cccCCCceEeCCCCCHHHHHHHHhc-CCCCEEEEEeCCCC-eEEEEEehHHHH
Q 010821 445 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF 495 (500)
Q Consensus 445 ~im~~~~~~v~~~~tL~~a~~~m~~-~~~~~l~VVd~~~g-~liGiIS~~DIl 495 (500)
|..+++++.+++++.++++.|.+ ++++++||+++ ++ +++|++|.+||+
T Consensus 68 --~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 68 --MTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred --ccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 46689999999999999999999 79999999995 55 999999999974
No 95
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.28 E-value=1.4e-10 Score=118.29 Aligned_cols=197 Identities=15% Similarity=0.196 Sum_probs=147.0
Q ss_pred eEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHH
Q 010821 182 VVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGK 261 (500)
Q Consensus 182 vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~ 261 (500)
.+.+.+..++.+|...|..+ ++..+||.|.+.+....++|..-++.++....... ....+-..++.+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~-----~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~---~~~~~l~~s~~dl---- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKS-----RIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLL---PLPSLLSKSLSDL---- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhC-----CccceeeecccccceeeehhHHHHHHHHHHhhccc---ccHHHhhCCHHHh----
Confidence 38899999999999999999 99999999988889999999999888886554321 1112222222221
Q ss_pred HhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCC
Q 010821 262 AYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS 341 (500)
Q Consensus 262 ~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~ 341 (500)
++| ....+..+..++++.+|+++|.+++++.+||++ ..+ +.+|+++..|+........-
T Consensus 232 --------~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~---~~g---~~v~~~s~~Dv~~l~~~~~~----- 290 (381)
T KOG1764|consen 232 --------GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVD---ENG---KKVGNYSRFDVIHLAREGTY----- 290 (381)
T ss_pred --------Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEc---CCC---ceecceehhhhhhhhhcCcc-----
Confidence 122 344689999999999999999999999999993 344 46999999999866554211
Q ss_pred ccccccc-cccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821 342 LPILKLP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 418 (500)
Q Consensus 342 ~~~l~~~-v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~ 418 (500)
..+..+ ++.. .. ....-..+++++.++.++.++++.|..++++++.|||++|.++|+||.+|++..+...
T Consensus 291 -~~~~~~~l~~~-----~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 291 -NNLDLSCLSEA-----LS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred -CccchhHHHHH-----hh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 111112 2111 00 0111223589999999999999999999999999999999999999999999866543
No 96
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.28 E-value=3.1e-11 Score=126.47 Aligned_cols=113 Identities=13% Similarity=0.167 Sum_probs=97.7
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821 361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 440 (500)
Q Consensus 361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 440 (500)
+.++|.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+.... ...++.++|
T Consensus 90 v~eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM------ 152 (475)
T TIGR01303 90 SRDLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM------ 152 (475)
T ss_pred hhhccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc------
Confidence 3455778899999999999999999999999999988 47999999999985320 124677754
Q ss_pred CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
..+++++.+++++.+|+++|.+++++++||||+ +|+++|+||.+||+++.
T Consensus 153 -------t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 153 -------STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRAT 202 (475)
T ss_pred -------cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence 678999999999999999999999999999995 79999999999999864
No 97
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.28 E-value=3.6e-11 Score=127.45 Aligned_cols=115 Identities=22% Similarity=0.371 Sum_probs=100.7
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCC
Q 010821 361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 440 (500)
Q Consensus 361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~ 440 (500)
++++|..+++++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+..... ...++.++|
T Consensus 89 ~~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim------ 153 (486)
T PRK05567 89 SESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVM------ 153 (486)
T ss_pred hhhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHc------
Confidence 35567789999999999999999999999999999999999999999999964211 135677755
Q ss_pred CCcccccC-CCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 441 YSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 441 ~~~~~im~-~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
. ++++++.+++++.++++.|.+++++.+||+|+ +|+++|+||.+||++.+
T Consensus 154 -------~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 154 -------TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAE 204 (486)
T ss_pred -------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhh
Confidence 4 57899999999999999999999999999995 79999999999999865
No 98
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.28 E-value=7.3e-11 Score=99.59 Aligned_cols=109 Identities=20% Similarity=0.357 Sum_probs=89.5
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358 (500)
Q Consensus 279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 358 (500)
.+++.+++++.+|++.|.+++.+.+||++ +++ +++|+++.+|+++.+..... ...++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~~--------~~~~v--------- 60 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVD---ENG---RLLGTVTDGDIRRALLKGLS--------LDDPV--------- 60 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEEC---CCC---CEEEEEEcHHHHHHHhcCCC--------cCCCH---------
Confidence 56789999999999999999999999993 345 79999999999875542110 11223
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 61 ---~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 61 ---SEVMNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ---HHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 3336677889999999999999999999999999998899999999999863
No 99
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.28 E-value=1.9e-11 Score=97.96 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=61.9
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w~~d~~~~~~~~~~g~~nn~ 104 (500)
.++|+ |...|++|.|.|+|++|.. .+|.+. .+|.|++++. |.+|.|+|+|+|||.|+.||.++...-..+..-|.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~~~~~~~~~~ 83 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTKPGRQVDTSG 83 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCceeeccccccee
Confidence 46787 9999999999999998875 689884 4799999984 88899999999999999999999755444444343
No 100
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.28 E-value=1.7e-10 Score=120.85 Aligned_cols=162 Identities=15% Similarity=0.152 Sum_probs=119.5
Q ss_pred EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHH
Q 010821 210 MAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLK 289 (500)
Q Consensus 210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~ 289 (500)
.+|++.+. ...+|.....-.|.+.+.-+ - .-.++++..|.+....... ...+.++++++.+++++.
T Consensus 43 ~~P~vsa~----mdtvTe~~MAi~~A~~GGig-v----Ih~n~~i~~qae~v~~VKv-----~eim~~~pvtv~p~~tI~ 108 (475)
T TIGR01303 43 TIPLVVAN----MTAVAGRRMAETVARRGGIV-I----LPQDLPIPAVKQTVAFVKS-----RDLVLDTPITLAPHDTVS 108 (475)
T ss_pred ccceeecc----chhhHHHHHHHHHHHCCCEE-E----EeCCCCHHHHHHHHhhcch-----hhccccCCeEECCCCCHH
Confidence 46888642 55678888777666654211 0 0012345555554443321 124667889999999999
Q ss_pred HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCc
Q 010821 290 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPL 369 (500)
Q Consensus 290 ~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~ 369 (500)
+|+++|.+++++.+||++ ++ +++|++|.+|+... . ...++ .++|..++
T Consensus 109 eA~~lm~~~~~~~~vVvD----~g---klvGIVT~rDL~~~------~-------~~~~V------------~dIMt~~l 156 (475)
T TIGR01303 109 DAMALIHKRAHGAAVVIL----ED---RPVGLVTDSDLLGV------D-------RFTQV------------RDIMSTDL 156 (475)
T ss_pred HHHHHHHhcCCeEEEEEE----CC---EEEEEEEHHHhhcC------C-------CCCCH------------HHHccCCc
Confidence 999999999999999983 25 79999999998410 0 01223 44588899
Q ss_pred eEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 370 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 370 ~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
+++.+++++.+|+++|.+++++.+||+|++|+++|+||.+||++....
T Consensus 157 itv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 157 VTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred eEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 999999999999999999999999999989999999999999986544
No 101
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.27 E-value=7.9e-11 Score=96.78 Aligned_cols=94 Identities=17% Similarity=0.298 Sum_probs=82.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ +++ +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD---DDG---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEEHHHHhcCC--------------------------
Confidence 567899999999999999999999999993 345 799999999998410
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.+.++.+++++.+++++|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1568899999999999999999999999998899999999999874
No 102
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=1e-10 Score=98.32 Aligned_cols=110 Identities=20% Similarity=0.400 Sum_probs=90.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..++++++..... ...++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~l~~~~~~~~~--------~~~~v-------- 59 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD---PDE---RPIGIVTERDIVRAVAAGID--------LDTPV-------- 59 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC---CCC---CEEEEeeHHHHHHHHhccCC--------CccCH--------
Confidence 467899999999999999999999999993 335 79999999999876653211 11223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++..+.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus 60 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 60 ----SEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ----HHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 3336778889999999999999999999999999998899999999999864
No 103
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.26 E-value=3.9e-11 Score=117.88 Aligned_cols=112 Identities=17% Similarity=0.300 Sum_probs=96.6
Q ss_pred ccCCCCCCC-ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCC
Q 010821 360 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 438 (500)
Q Consensus 360 ~v~d~m~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~ 438 (500)
+++++|.++ +.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....+. ....++.+++
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im---- 226 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM---- 226 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence 667888888 899999999999999999999999999998999999999999987544321 1235677754
Q ss_pred CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEe
Q 010821 439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 490 (500)
Q Consensus 439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS 490 (500)
.+++.++.+++++.+|++.|.+.+.+++||+|+ +|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 668889999999999999999999999999995 689999985
No 104
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.1e-10 Score=103.24 Aligned_cols=126 Identities=21% Similarity=0.358 Sum_probs=91.5
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccc-ccc------CcccccHHHHHhcC---
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NLSEMTIHQALQLG--- 437 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~-~~~------~~~~~~v~~~l~~~--- 437 (500)
+++++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+.+..... ..+ .....++.++++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999876543210 000 00001111110000
Q ss_pred -----CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 438 -----QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 438 -----~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
.......++|..++.++.+++++.+++..|.+.+.+++||++. |+++|+||.+|+++
T Consensus 81 ~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 0000011245678999999999999999999999999999993 89999999999974
No 105
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.26 E-value=7.5e-11 Score=98.58 Aligned_cols=100 Identities=23% Similarity=0.368 Sum_probs=87.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 444 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 444 (500)
....+.+++++.++.+.+.+.+...+||+|+ +|+++|+++.+|+...... +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~----------- 56 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------Y----------- 56 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------h-----------
Confidence 3567899999999999999988889999998 6999999999999764322 2
Q ss_pred cccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 445 ~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 57 --m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 57 --IDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred --ccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 245788899999999999999999999999997 5899999999999864
No 106
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=9.5e-11 Score=98.38 Aligned_cols=109 Identities=23% Similarity=0.427 Sum_probs=90.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+.+...+||++ +++ +++|+++..++++++..... ..++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~---------~~~v-------- 58 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVD---GDG---HLVGLLTRDDLIRALAEGGP---------DAPV-------- 58 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEEC---CCC---cEEEEeeHHHHHHHHHhcCC---------CCcH--------
Confidence 467899999999999999988899999993 345 79999999999876643210 1123
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+++...+||++++|+++|++|.+|+.+
T Consensus 59 ----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 59 ----RGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred ----HHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 3336678889999999999999999999999999998899999999999864
No 107
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=1.3e-10 Score=97.43 Aligned_cols=108 Identities=22% Similarity=0.449 Sum_probs=90.2
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
++++++.+++++.+|++.|.+++...+||++ +++ +++|+++.+++++.+.... .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~-----------~~~------- 57 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVD---EDG---RLVGIVTSWDISKAVARDK-----------KSV------- 57 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEEC---CCC---cEEEEEeHHHHHHHHhhCc-----------cCH-------
Confidence 4678899999999999999999999999993 345 7999999999986543210 112
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+.+
T Consensus 58 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 58 -----EDIMTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred -----HHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 2336667889999999999999999999999999998999999999999864
No 108
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.4e-10 Score=97.48 Aligned_cols=111 Identities=20% Similarity=0.386 Sum_probs=90.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+++||++ +++ +++|+++.+++++++...... ....+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~Giv~~~~l~~~~~~~~~~------~~~~~--------- 60 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD---DGG---RLVGIFSERDIVRKVALRGAS------ALDTP--------- 60 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEC---CCC---CEEEEEehHHHHHHHhhcCCC------ccccC---------
Confidence 467889999999999999999999999993 335 799999999999876532110 00112
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+.++|.+++.++.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus 61 ---~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 61 ---VSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred ---HHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 23447778899999999999999999999999999987 99999999999864
No 109
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=7.8e-11 Score=100.70 Aligned_cols=120 Identities=20% Similarity=0.407 Sum_probs=93.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+.+++.+||++ +++ +++|+++..++++++........ ..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~~~~~----- 67 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVN---EDG---KLVGLLTQRDLLRAALSSLSDNG---EESLTKERDV----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEEC---CCC---CEEEEEEHHHHHHHhcccccccc---ccccccccCc-----
Confidence 467899999999999999999999999993 335 79999999999987653221100 0000000111
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
++.++|..++..+.+++++.++++.|.+.+.+.+||++++|+++|++|..|++.
T Consensus 68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 234457778899999999999999999999999999998899999999999874
No 110
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1.2e-10 Score=99.09 Aligned_cols=113 Identities=15% Similarity=0.247 Sum_probs=89.2
Q ss_pred CceEecCCCCHHHHHHHHHHCC-CCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 446 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~i 446 (500)
++.++.+++++.++++.|...+ ++.+||+|+ |+++|+++..|+..+......... ..+.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~~------------- 66 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSEV------------- 66 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHHh-------------
Confidence 4567899999999999998776 889999998 999999999999875432100000 123456664
Q ss_pred cCCCceEeCCCCCHHHHHHHHhcCCCC---EEEEEeCCCCeEEEEEehHHHHH
Q 010821 447 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 447 m~~~~~~v~~~~tL~~a~~~m~~~~~~---~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
|..++.++.+++++.++++.|.+++.. ..+||++ +|+++|+||..|+++
T Consensus 67 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 67 MDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred cCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 467899999999999999999998864 3468885 799999999999985
No 111
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=8.9e-11 Score=99.30 Aligned_cols=114 Identities=18% Similarity=0.333 Sum_probs=89.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ +++ +++|+++.+++++++........ ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~---------- 63 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD---KEG---KYVGTISLTDILWKLKGLENLDL--ERLVDL---------- 63 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeEC---CCC---cEEEEEeHHHHHHHhhccCchhH--HHHhCC----------
Confidence 467899999999999999999999999993 345 79999999999987653211100 000012
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++++|.+++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 64 --~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 64 --KVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred --cHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 234447778999999999999999998754 5999998899999999999875
No 112
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.24 E-value=6.4e-11 Score=125.10 Aligned_cols=113 Identities=22% Similarity=0.227 Sum_probs=97.6
Q ss_pred CCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC---CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 363 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 363 d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~---g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
+.+..+++++++++++.+++++|.+++++.+||+|++ ++++|+++.+|+.... . .+.++.++|
T Consensus 100 ~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diM----- 165 (495)
T PTZ00314 100 NGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVM----- 165 (495)
T ss_pred cccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhh-----
Confidence 3456678999999999999999999999999999874 7999999999997421 1 136788866
Q ss_pred CCCcccccCC--CceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 440 SYSPYELRSQ--RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 440 ~~~~~~im~~--~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
.+ +++++.+++++.+|+++|.+++.+.+||||+ +++++|+||++||++..
T Consensus 166 --------t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 166 --------TPREKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR 217 (495)
T ss_pred --------CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence 44 7899999999999999999999999999995 79999999999999763
No 113
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.24 E-value=5.5e-11 Score=124.98 Aligned_cols=116 Identities=13% Similarity=0.226 Sum_probs=99.6
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 434 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l 434 (500)
+++++|++++++++++.++.++++.|.+ +....++|+|++++++|+++.+|++.. . .+.++++++
T Consensus 132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a--~--------~~~~v~~im 201 (449)
T TIGR00400 132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA--K--------PEEILSSIM 201 (449)
T ss_pred hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC--C--------CCCcHHHHh
Confidence 4566699999999999999999999975 456789999999999999999998742 1 135677755
Q ss_pred hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821 435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
.++++++.+++++.+|++.|.+++...+||||+ +|+++|+||.+|+++.+.
T Consensus 202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHH
Confidence 667889999999999999999999999999995 799999999999998763
No 114
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.3e-10 Score=100.31 Aligned_cols=124 Identities=17% Similarity=0.266 Sum_probs=91.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
.++++.+++++.+|++.|.++++..+||++ +++ +++|+++..|+++......... .........+.. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~-~- 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVD---EKG---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSE-K- 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEEC---CCC---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhh-h-
Confidence 467899999999999999999999999993 335 7999999999987653211100 000000000000 0
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.....+.+..++.++.+++++.+|+++|.+++.+.+||+|++++++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00112346678899999999999999999999999999998899999999999875
No 115
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.24 E-value=1.6e-10 Score=96.10 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=87.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|+++... .++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d---~~g---~~~Giv~~~dl~~~~~--------------~~~-------- 53 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD---ADG---QPLGFVTRREAARASG--------------GCC-------- 53 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC---CCC---CEEEEEeHHHHHHhcc--------------cch--------
Confidence 467889999999999999999999999993 345 7999999999985311 112
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|+|+.++++.
T Consensus 54 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 54 ----GDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred ----hhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 2336666788999999999999999999999999998899999999999864
No 116
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=100.16 Aligned_cols=123 Identities=20% Similarity=0.332 Sum_probs=93.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.++.++.+|+++|.+++.+.+||++ .+++ +++|+++..++++++......... ....... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~---~~~G~v~~~dl~~~~~~~~~~~~~-~~~~~~~-------~~ 68 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTG---KLVGIITATDILKYLGGGEKFNKI-KTGNGLE-------AI 68 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCC---EEEEEEEHHHHHHHhhccchhccc-cccccch-------hh
Confidence 567899999999999999999999999994 3336 799999999999876532111000 0000000 00
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
...+.++|..+++++++++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 69 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 11234457778999999999999999999999999999998899999999999875
No 117
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.23 E-value=4.1e-11 Score=103.42 Aligned_cols=112 Identities=12% Similarity=0.186 Sum_probs=90.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ +++ +++|+++..++++.+..... ....++
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd---~~~---~~~Gii~~~dl~~~~~~~~~-------~~~~~v-------- 61 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD---ESG---KILGMVTLGNLLSSLSSGKV-------QPSDPV-------- 61 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc---CCC---CEEEEEEHHHHHHHHHHhcc-------CCCCcH--------
Confidence 578899999999999999999999999993 335 69999999999976553211 112233
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHH---------HCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~---------~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
+++|.+++.++.+++++.++.+++. +.+...+||++++|+++|+||.+|++++
T Consensus 62 ----~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 62 ----SKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred ----HHHhhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 4558889999999999999999653 3367788899988999999999999864
No 118
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.23 E-value=1.8e-10 Score=97.48 Aligned_cols=111 Identities=18% Similarity=0.366 Sum_probs=90.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++..+.+++++.+|++.|.+.+.+.+||++ +++ +++|+++.+|+++.+...... ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~~~-------~~~~--------- 59 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVD---RDG---GVVGIITLPDLLRALEADEAG-------EPSA--------- 59 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc---CCC---CEEEEEEHHHHHHHHhccccc-------cccc---------
Confidence 456889999999999999999999999993 345 799999999999765421100 0111
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~ 413 (500)
+.++|..++.++.+++++.+++++|.+++...+||+|++ |+++|+||.+|+++
T Consensus 60 ---~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 60 ---VDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred ---HHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 233467788999999999999999999999999999987 79999999999874
No 119
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=2.4e-10 Score=95.17 Aligned_cols=104 Identities=21% Similarity=0.411 Sum_probs=88.4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++..++..... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~------------- 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM------------- 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence 4567888999999999999888999999998899999999999975210 13444433
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
..++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence 56788899999999999999999999999999 379999999999975
No 120
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.23 E-value=4.5e-11 Score=115.54 Aligned_cols=116 Identities=16% Similarity=0.274 Sum_probs=102.6
Q ss_pred ccCCCCC--CCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821 360 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 360 ~v~d~m~--~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
.|+|+|. ....++.+++++.+..++..+.+.+++||+|...+++|++|.+|+.... .+.++..+
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----------~~t~ieKV---- 254 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----------PSTTIEKV---- 254 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----------CCccHHHH----
Confidence 3456676 5678899999999999999999999999999999999999999997631 23667764
Q ss_pred CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821 438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
|+++++++.+.+++..+.++|.-.++..+||+|+ +.+++|+||++|+++.+.
T Consensus 255 ---------Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq 306 (432)
T COG4109 255 ---------MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ---------hccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence 5889999999999999999999999999999995 899999999999999873
No 121
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.23 E-value=2.1e-10 Score=96.14 Aligned_cols=109 Identities=22% Similarity=0.422 Sum_probs=90.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+++.+.+||++ . + +++|+++.++++++...... ...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~--~---~~~G~v~~~~l~~~~~~~~~--------~~~~--------- 57 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD--D--G---RPLGIVTERDILRLLASGPD--------LQTP--------- 57 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee--C--C---EEEEEEeHHHHHHHHhcCCC--------CCcC---------
Confidence 467899999999999999998899999994 2 6 79999999999876642210 1122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
++++|..+++.+.+++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 58 ---v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 58 ---VGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred ---HHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 23346678889999999999999999999999999998899999999999874
No 122
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.22 E-value=1.7e-10 Score=98.25 Aligned_cols=120 Identities=20% Similarity=0.306 Sum_probs=92.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.++++..+||++ . + +++|+++..+++++......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD--R--G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec--C--C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 467899999999999999999999999993 2 5 79999999999976543211100 000000001
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 11345567778999999999999999999999999999998899999999999875
No 123
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.6e-10 Score=97.00 Aligned_cols=109 Identities=14% Similarity=0.272 Sum_probs=89.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++..+.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|++.+..... ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v-------- 59 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKD---NEE---KLKGVVTFTDILDLDLFES--------FLEKKV-------- 59 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEc---CCC---CEEEEEehHHhHHHHhhcc--------cccCcH--------
Confidence 467899999999999999999999999993 345 7999999999986543110 011223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.+++.++.+++++.++++.|.+++...+||+++ |+++|+||..|++.
T Consensus 60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 60 ----FNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred ----HHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 3337778889999999999999999999999999987 99999999999863
No 124
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.22 E-value=2.7e-10 Score=95.45 Aligned_cols=108 Identities=23% Similarity=0.422 Sum_probs=89.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++....... ..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~~l~~~~~~~~~---------~~~v-------- 57 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD---D-G---KLVGIVTLSDIAHAIARGLE---------LAKV-------- 57 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEHHHHHHHHhcccc---------ccCH--------
Confidence 567899999999999999999999999993 3 6 79999999999875432110 0122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++..+.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 58 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 58 ----KDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred ----HHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 2336668899999999999999999999999999998899999999999864
No 125
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.5e-10 Score=97.80 Aligned_cols=109 Identities=14% Similarity=0.256 Sum_probs=86.7
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
++.++.+++++.+|++.|.+++ .+.+||++ +++ +++|+++..||++...... ...++
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~dl~~~~~~~~---------~~~~v------- 59 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD---NEG---RYVGIISLADLRAIPTSQW---------AQTTV------- 59 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEc---CCC---cEEEEEEHHHHHHHHHhhc---------cccch-------
Confidence 5678999999999999997775 88999993 345 6999999999987553211 01222
Q ss_pred cCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 60 -----~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 60 -----IQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred -----hhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 233542 3568999999999999999999999999998899999999999864
No 126
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.6e-10 Score=97.36 Aligned_cols=112 Identities=20% Similarity=0.293 Sum_probs=90.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..++++.+...... .....+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~---~~~---~~~G~v~~~~l~~~~~~~~~~-----~~~~~~--------- 61 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD---DNG---NLVGFLSEQDCLKQLLESSYH-----CDGVAT--------- 61 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEEC---CCC---eEEEEeehHHHHHHhhhhhhc-----cCCCcc---------
Confidence 467899999999999999998999999993 345 799999999999766532110 001112
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+.++|..++..+.+++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus 62 ---v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 62 ---VRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred ---HHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 23446677889999999999999999999999999987 99999999999874
No 127
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=2.3e-10 Score=95.71 Aligned_cols=105 Identities=18% Similarity=0.300 Sum_probs=88.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..+++... ...++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~-------------~~~~v~------- 56 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD---EKN---KVVGIVTSKDVAGKD-------------PDTTIE------- 56 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC---CCC---eEEEEecHHHHhccc-------------ccccHH-------
Confidence 578899999999999999999999999993 356 799999999997320 012233
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 57 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 57 -----KVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred -----HHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 336667889999999999999999999999999998999999999999874
No 128
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=2.6e-10 Score=96.01 Aligned_cols=111 Identities=15% Similarity=0.250 Sum_probs=89.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++..+.+++++.+|++.|.+.+.+.+||++ +++ +++|+++..|+++.+.... .+...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i-------- 60 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD---DKK---RLVGIITRYDVLSYALESE-------ELKDAKV-------- 60 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEc---CCC---CEEEEEEHHHHHHhhhhhh-------hhcCCcH--------
Confidence 356789999999999999999999999993 345 6999999999987543210 0011222
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 61 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 61 ----REVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred ----HHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 3336678889999999999999999999999999998899999999999863
No 129
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=2.6e-10 Score=96.45 Aligned_cols=110 Identities=24% Similarity=0.383 Sum_probs=86.4
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
+++++.++.++.+|++.|.+++ ...+||. + ++ +++|+++..|+++++..... ....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~--~~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i------- 60 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVV--E--KG---RLLGIFTERDIVRLTAIGKD-------LSDLPI------- 60 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEc--C--CC---cEEEEEeHHHHHHHHhcCCC-------ccccCH-------
Confidence 4567899999999999998888 5667777 2 35 79999999999976542110 011223
Q ss_pred cCcccCCCCCCCceEecCC--CCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~--~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.++ +++.++++.|.+++...+||+|++|+++|+||++|+++
T Consensus 61 -----~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 61 -----GEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred -----HHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 33366778888877 68999999999999999999998899999999999875
No 130
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.20 E-value=2.2e-10 Score=96.19 Aligned_cols=109 Identities=22% Similarity=0.396 Sum_probs=89.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.++.++.+|++.|.+++.+.+||++ . + +++|+++..++++.+.... . ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~--~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i-------- 59 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--D--G---RLVGIVTDRDLRNRVVAEG-L------DPDTPV-------- 59 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--C--C---EEEEEEEhHHHHHHHhccC-C------CccCCH--------
Confidence 567899999999999999999999999994 2 5 7999999999987544210 0 001222
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..+++.+.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|+++
T Consensus 60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 60 ----SEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred ----HHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 3346778899999999999999999999999999987 99999999999975
No 131
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.20 E-value=2.6e-10 Score=95.67 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=88.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.++++..+||++ .+++ +++|+++..++++++..... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~----- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYD--GDLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL----- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence 467899999999999999999999999994 2225 79999999999986642110 0112211
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus 63 -------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 -------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3 36788999999999999999999999999998899999999999863
No 132
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.20 E-value=3.3e-10 Score=95.41 Aligned_cols=111 Identities=22% Similarity=0.412 Sum_probs=91.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.++++.|.+.+.+.+||++ +++ +++|+++..++++.+...... ...+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~~i~~~~~~~~~~-------~~~~--------- 60 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD---EDG---RLVGIFTDGDLRRALEKGLDI-------LTLP--------- 60 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEc---CCC---CEEEEechHHHHHHHhccCcc-------ccCC---------
Confidence 467789999999999999988899999993 345 799999999999876532211 0112
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+.++|..++.++.+++++.++++.|...+...+||++++|+++|+|+..||++
T Consensus 61 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 61 ---VADVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred ---HHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 33447777889999999999999999999999999998899999999999874
No 133
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.20 E-value=3.4e-10 Score=94.50 Aligned_cols=106 Identities=21% Similarity=0.368 Sum_probs=88.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++..+.+++++.+|++.|.++++..+||++ +++ +++|+++..|+++.... ..++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~~~---~~~G~v~~~dl~~~~~~------------~~~v-------- 56 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD---KDN---KLLGIVSLESLEQAYKE------------AKSL-------- 56 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEc---CCC---cEEEEEEHHHHHHHhhc------------CCcH--------
Confidence 467889999999999999999999999993 345 79999999999864321 1122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|...+.++.+++++.++++.|.+.+...+||++++|+++|++|.+|+++
T Consensus 57 ----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 57 ----EDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred ----hHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 2336667889999999999999999999999999998899999999999864
No 134
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=3.3e-10 Score=94.95 Aligned_cols=107 Identities=19% Similarity=0.401 Sum_probs=89.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.++.++.+|++.|.+++..++||++ + + +++|+++..|+++.+.... ...++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~dl~~~~~~~~---------~~~~~-------- 58 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVE---G-G---RVVGIISRRDVEKALRHGL---------GHAPV-------- 58 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEee---C-C---EEEEEEEHHHHHHHHhccc---------ccCcH--------
Confidence 678899999999999999988999999993 2 5 7999999999987543211 12223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.+++.++.+++++.+++++|.+++.+.+||++ +|+++|+||..|+++
T Consensus 59 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 59 ----KDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred ----HHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 333777889999999999999999999999999998 789999999999864
No 135
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.19 E-value=1.6e-10 Score=116.63 Aligned_cols=115 Identities=15% Similarity=0.196 Sum_probs=96.0
Q ss_pred ccCCC--ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821 274 AFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 351 (500)
Q Consensus 274 ~~~~~--~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 351 (500)
+|.++ ++++++++++.+|++.|.+++...+||++ +++ +++|+++..|+.+.+.... ....+
T Consensus 202 im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd---~~g---~~iG~vt~~dl~~~~~~~~--------~~~~~--- 264 (321)
T PRK11543 202 LMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD---AQQ---QVQGVFTDGDLRRWLVGGG--------ALTTP--- 264 (321)
T ss_pred HhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc---CCC---cEEEEecHHHHHHHHhCCC--------CcCCc---
Confidence 46666 99999999999999999999999999993 445 7999999999987553210 01122
Q ss_pred ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
+.++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+||++|++++
T Consensus 265 ---------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 265 ---------VNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred ---------HHHhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 344588889999999999999999999999999999988999999999999863
No 136
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.19 E-value=2.6e-10 Score=120.59 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=97.5
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 439 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~ 439 (500)
+++++|.+++.++.+++++.++++.|.+.+++.+||+|++++++|+|+..|+.+....... ..+.++.++|
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im----- 406 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM----- 406 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence 5677798899999999999999999999999999999988999999999999885543211 1134677754
Q ss_pred CCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 440 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 440 ~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
..++.++.+++++.+++++|.+++ ++||++ +++++|+||++||+++|
T Consensus 407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 567889999999999999998864 355553 68999999999999986
No 137
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=3e-10 Score=99.53 Aligned_cols=129 Identities=15% Similarity=0.241 Sum_probs=92.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccC-CCC-ccccc--ccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSS-LPILK--LPICAIP 353 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~-~~~-~~~l~--~~v~~l~ 353 (500)
+++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|+++++....... ... ..+.. ..-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVD---DNG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEEC---CCC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 457789999999999999999999999993 345 7999999999998764221110 000 00000 0000000
Q ss_pred ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.......+.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+||.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 000111355668888899999999999999999999999999986 99999999999875
No 138
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.9e-10 Score=100.55 Aligned_cols=130 Identities=19% Similarity=0.335 Sum_probs=92.5
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc--cc
Q 010821 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI--PV 354 (500)
Q Consensus 277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l--~i 354 (500)
+++.++.+++++.+|++.|.+++.+++||++ +++ +++|+++..++++++...+.........+....... ..
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd---~~~---~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD---DDG---RLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAF 75 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC---CCC---CEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHH
Confidence 4678899999999999999999999999993 345 799999999998765432110000000000000000 00
Q ss_pred -cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 355 -GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 355 -~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
......+.++|..++..+.+++++.++++.|.+.+.+.+||+| +|+++|+||..|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 76 VRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 0000134455777899999999999999999999999999999 899999999999864
No 139
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=3e-10 Score=98.86 Aligned_cols=127 Identities=17% Similarity=0.325 Sum_probs=92.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccc-cc--ccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL-PI--CAIPV 354 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~-~v--~~l~i 354 (500)
+++++.+++++.+|++.|.+++.+++||++ +++ +++|+++..++++++........ ...... .. .+...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d---~~~---~~~G~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 73 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVD---NEG---RVVGIVSEGDLIRKIYKGKGLFY--VTLLYSVIFLDESKIK 73 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceEC---CCC---CEEEEEeHHHHHHHHhccCCccc--ccccccccccchHHHH
Confidence 467899999999999999999999999993 345 69999999999987754321100 000000 00 00000
Q ss_pred cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
......+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus 74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00001344557778899999999999999999999999999997 99999999999875
No 140
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.18 E-value=3.2e-10 Score=95.39 Aligned_cols=111 Identities=25% Similarity=0.374 Sum_probs=90.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ +++ +++|+++..++++++...... -..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~-------~~~~--------- 59 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD---DDG---RLVGIVSLDDIREILFDPSLY-------DLVV--------- 59 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEEC---CCC---CEEEEEEHHHHHHHHhccccc-------ccEE---------
Confidence 567899999999999999999999999993 235 799999999998765321100 0122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~ 413 (500)
+.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+++..|++.
T Consensus 60 ---v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 60 ---ASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred ---HHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 23447778899999999999999999999999999987 799999999999864
No 141
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.18 E-value=1e-09 Score=108.63 Aligned_cols=121 Identities=12% Similarity=0.143 Sum_probs=96.3
Q ss_pred CCcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccc
Q 010821 271 HGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLP 348 (500)
Q Consensus 271 ~g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~ 348 (500)
+..+|.+ .++++.+++++.++++.+.+++.+++||++ .+.+ +++|+++.+|++.++.... . ...
T Consensus 69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d---~iiGiv~~kDll~~~~~~~-~--------~~~ 134 (292)
T PRK15094 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA-E--------AFS 134 (292)
T ss_pred EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCC---cEEEEEEHHHHHhHhhccC-C--------cCC
Confidence 3446665 699999999999999999999999999994 3324 6999999999986542100 0 011
Q ss_pred cccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821 349 ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 418 (500)
Q Consensus 349 v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~ 418 (500)
+. ++|. +++++++++++.++++.|.+++.+.+||+|+.|.++|+||..||+..+...
T Consensus 135 l~------------~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGe 191 (292)
T PRK15094 135 MD------------KVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE 191 (292)
T ss_pred HH------------HHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCC
Confidence 22 2354 455899999999999999999999999999989999999999999866554
No 142
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.18 E-value=4.2e-10 Score=94.64 Aligned_cols=111 Identities=15% Similarity=0.194 Sum_probs=89.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..+++..+...... ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v-------- 60 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD---G-N---KLVGIFTSKDIALRVVAQGLD------PESTLV-------- 60 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE---C-C---EEEEEEEhHHHHHHHHhcCCC------cCcCCH--------
Confidence 467899999999999999999999999993 3 5 799999999998654421100 001223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+++...+||++++|+++|+|+..|++.
T Consensus 61 ----~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 61 ----ERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred ----HHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 3347777889999999999999999999999999998899999999999863
No 143
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.17 E-value=4.2e-10 Score=96.20 Aligned_cols=120 Identities=18% Similarity=0.304 Sum_probs=93.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++.+.+...+.... ....+ .+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~--~~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE---D-N---ELVGVISDRDYLKAISPFLGTAG-------ETEKD--LATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe---C-C---eEEEEEEHHHHHHHHHHHhcccc-------chHHH--HHHH
Confidence 467899999999999999999999999993 2 5 79999999999987654322100 00000 0001
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
...++++|..+++.+.+++++.++++.|.+++...+||+|++|+++|+++..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 11234557778999999999999999999999999999998899999999999875
No 144
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.17 E-value=5.5e-10 Score=93.54 Aligned_cols=109 Identities=21% Similarity=0.365 Sum_probs=89.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++.+.+++++.+|++.|.+.+++.+||++ . + +++|+++..|+++....... .. +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~--~---~~~G~v~~~dl~~~~~~~~~---------~~----~----- 56 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD--D--G---RLVGIVTLADIRRVPAEGRE---------AT----V----- 56 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee--C--C---eEEEEEEHHHHHHHHhcCcc---------cc----c-----
Confidence 567899999999999999998999999993 3 5 79999999999875432110 00 0
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.+.++|.+++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus 57 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 57 --LVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred --CHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 123346778999999999999999999999999999998899999999999864
No 145
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=5.1e-10 Score=94.16 Aligned_cols=111 Identities=21% Similarity=0.375 Sum_probs=88.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ + + +++|+++..+++..+... . .. ...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~i~~~~l~~~~~~~--~----~~-~~~~--------- 58 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE---N-D---RLVGIVTDRDIVVRAVAE--G----RD-PDTT--------- 58 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee---C-C---EEEEEEEhHHHHHHHhhc--c----CC-cccC---------
Confidence 467899999999999999999999999993 2 6 799999999987322210 0 00 0111
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.+.++|...+.++.+++++.++++.|...+.+.+||++++|+++|+++..|+++
T Consensus 59 --~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 59 --TVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred --CHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 133447778889999999999999999999999999998899999999999865
No 146
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.1e-10 Score=96.79 Aligned_cols=119 Identities=23% Similarity=0.477 Sum_probs=91.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++++......... ..........
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~---~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~----- 67 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIE---G-G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNL----- 67 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEE---C-C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhcc-----
Confidence 567899999999999999999999999994 2 6 899999999999776532211000 0000111111
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.+.++|..++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+|+.+|+++
T Consensus 68 --~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 68 --PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred --CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 233446678899999999999999999999999999997 99999999999874
No 147
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=4.7e-10 Score=96.89 Aligned_cols=124 Identities=15% Similarity=0.244 Sum_probs=90.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++.+.+++++.+|+++|.+.+++.+||++ +++ +++|++|..|+++++....... .......... ...
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~---~~~---~~~G~it~~dl~~~~~~~~~~~-----~~~~~~~~~~-~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVD---DNG---KLTGIVTRHDIVDFVVRDRDKA-----RTGDRSGEKE-RML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEC---CCC---cEEEEEEHHHHHHHHhhhhhhc-----chhhhhhhhh-hhc
Confidence 467899999999999999999999999993 335 7999999999987653211000 0000000000 000
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~ 413 (500)
...+.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 0123455777899999999999999999999999999984 4689999999999864
No 148
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.16 E-value=2.7e-10 Score=115.19 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=93.8
Q ss_pred ccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821 274 AFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 351 (500)
Q Consensus 274 ~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 351 (500)
+|.+ +++++.+++++.+|++.|.+++...+||++ +++ +++|++|..|+.+.+.... .....
T Consensus 207 im~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~---- 269 (326)
T PRK10892 207 IMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQA---- 269 (326)
T ss_pred HhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccC----
Confidence 4665 899999999999999999999888888883 456 7999999999986432110 01112
Q ss_pred ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
+++++|.+++.++.+++++.+|++.|.+++++.+||++ +|+++|+||++|+++.
T Consensus 270 --------~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 270 --------SIADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred --------CHHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 24455888999999999999999999999999999997 6899999999999863
No 149
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=7.4e-10 Score=93.07 Aligned_cols=110 Identities=14% Similarity=0.328 Sum_probs=87.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
.+.++.+++++.+|++.|.+++.+.++|.+ ++ +++|+++..|+++++...... ....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v-------- 60 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME----RG---ELVGLLTFREVLQAMAQHGAG------VLDTTV-------- 60 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee----CC---EEEEEEEHHHHHHHHHhcCCc------hhcCCH--------
Confidence 467889999999999999888887777762 36 799999999999876431000 011223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.+++++|.+++...+||++ +|+++|++|.+|+++
T Consensus 61 ----~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 61 ----RAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred ----HHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 344777788999999999999999999999999998 589999999999875
No 150
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.15 E-value=6.5e-10 Score=94.01 Aligned_cols=109 Identities=20% Similarity=0.319 Sum_probs=86.1
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++...+||++....++ +++|+++..|++... . ...++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-----~-------~~~~v-------- 59 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-----D-------SETPL-------- 59 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-----c-------cCCCH--------
Confidence 467889999999999999999999999994211146 799999999986321 0 01122
Q ss_pred CcccCCCCCCCceEecC--CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~--~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+++|......+.. ++++.++++.|.+++...+||++++|+++|+||.+|+++
T Consensus 60 ----~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 60 ----SEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred ----HHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 3336666667755 999999999999999999999998899999999999864
No 151
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.14 E-value=9.4e-10 Score=92.41 Aligned_cols=110 Identities=23% Similarity=0.422 Sum_probs=88.4
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ ++ +++|+++..|+++++...... ....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~-------- 60 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD----NE---KPVGIITERDLVKKVVSRNLK------PREVPV-------- 60 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEE----CC---EEEEEEEHHHHHHHHhhccCC------cccCCH--------
Confidence 467889999999999999999999999994 23 699999999999866432100 011122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+|+.+|++.
T Consensus 61 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 61 ----GEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred ----HHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 33466778899999999999999999999999999865 9999999999863
No 152
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=5.4e-10 Score=95.46 Aligned_cols=120 Identities=19% Similarity=0.358 Sum_probs=91.0
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..++++.......... ...... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~~-------~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ---KAG---ELIGIITRRDIIRAGSVRTSVED---QQRTQT-------KA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEcHHHHhhccccccccc---hhhhhh-------hc
Confidence 567899999999999999999999999993 345 79999999999864321100000 000000 01
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
...+.++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|++|..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 11234457778899999999999999999999999999998899999999999874
No 153
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.13 E-value=8.4e-10 Score=93.34 Aligned_cols=111 Identities=27% Similarity=0.511 Sum_probs=93.5
Q ss_pred cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821 275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 354 (500)
Q Consensus 275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 354 (500)
+.+.++++.++.++.+|+..|.++++..+||++ .. +++|++|..|+++.+....... .
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~----~~---~l~Giit~~di~~~~~~~~~~~--------~------- 62 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVD----DG---KLVGIITERDILRALAAGGKRL--------L------- 62 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEee----CC---EEEEEEEHHHHHHHHhccCCcc--------c-------
Confidence 346789999999999999999999999999993 22 5999999999998876443220 0
Q ss_pred cccCcccCCCCCCCceEecCCCCHHHHHHHHHH-CCCCEEEEEcCCC-cEEEEEeHHHHH
Q 010821 355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT 412 (500)
Q Consensus 355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~-~~~~~lpVvd~~g-~lvGiis~~Di~ 412 (500)
.+.++|..+++++.++.++.++.+.|.+ ++++.+||+++++ +++|++|.+|++
T Consensus 63 -----~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 -----PVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred -----cHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 2344477789999999999999999999 7999999999886 999999999973
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.13 E-value=9.3e-10 Score=92.37 Aligned_cols=109 Identities=17% Similarity=0.273 Sum_probs=88.2
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
.++.+.+++++.+|++.|.+++...+||++ + + +++|+++..++++.+.... .....++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~~~~~-------~~~~~~i-------- 59 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD---G-D---PRLGIVTRTDLLDAVLLDG-------LPSSTPV-------- 59 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec---C-C---eEEEEEEHHHHHHHHHcCC-------CCCCCCH--------
Confidence 356789999999999999999999999993 3 5 6999999999987653210 0011223
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.+++..+++++++.++++.|.+++...+||+|+ ++++|++|..|+++
T Consensus 60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 60 ----GEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred ----HHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 3337778889999999999999999999999999985 89999999999875
No 155
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.12 E-value=6.9e-10 Score=97.06 Aligned_cols=110 Identities=22% Similarity=0.349 Sum_probs=81.9
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccC-------cccccHHHHHhcCCCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-------LSEMTIHQALQLGQDS 440 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~-------~~~~~v~~~l~~~~~~ 440 (500)
.+.++.+++++.+|++.|.+.+++.+||+|++|+++|+++..|+++........... .....+.+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 467899999999999999999999999999999999999999999865432211000 00111333331100
Q ss_pred CCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCC
Q 010821 441 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG 481 (500)
Q Consensus 441 ~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~ 481 (500)
.++.|..+++++.+++++.+|++.|.+++++++||+|+.
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 012345678999999999999999999999999999953
No 156
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.12 E-value=1.6e-09 Score=113.71 Aligned_cols=167 Identities=17% Similarity=0.276 Sum_probs=117.8
Q ss_pred eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcH
Q 010821 209 SMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNL 288 (500)
Q Consensus 209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl 288 (500)
..+|++.+. ...+|..++..++......+ .+. + +.+++.-.+....... ....+.++++++.+++++
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~G-vI~-~---n~~~e~q~~~V~~Vk~----~~~~~~~~~vtl~~~~tv 99 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIG-VIH-R---NMSIEEQAEQVKRVKR----AENGIISDPVTISPETTV 99 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCc-eee-c---CCCHHHHHHHHhhhcc----ccCceecCceEeCCCCCH
Confidence 567888643 45589999888877654322 110 0 1122221221111110 112356688999999999
Q ss_pred HHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC-C
Q 010821 289 KDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-R 367 (500)
Q Consensus 289 ~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~-~ 367 (500)
.+|+++|.+++++++||++.+...+ +++|+++.+|++... ....++ .++|. .
T Consensus 100 ~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~------------~~~~~V------------~dvm~~~ 152 (450)
T TIGR01302 100 ADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK------------DKGKPV------------SEVMTRE 152 (450)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh------------cCCCCH------------HHhhCCC
Confidence 9999999999999999995211115 799999999997321 012233 34477 4
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 415 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~ 415 (500)
+++++++++++.+++++|.+++.+.+||+|++|+++|+||.+||++..
T Consensus 153 ~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 153 EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 899999999999999999999999999999999999999999999754
No 157
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.11 E-value=1.6e-09 Score=112.45 Aligned_cols=155 Identities=9% Similarity=0.085 Sum_probs=113.4
Q ss_pred CcccCC--CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccc
Q 010821 272 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 349 (500)
Q Consensus 272 g~~~~~--~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v 349 (500)
..+|.+ ++++++.++++.++++.|.+++.+++||++ ++.+ +++|+++.+|++.++.. . ..++
T Consensus 194 ~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~--~~~d---~ivGiv~~kDll~~~~~---~--------~~~l 257 (408)
T TIGR03520 194 KQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYK--ETID---NITGVLYIKDLLPHLNK---K--------NFDW 257 (408)
T ss_pred eeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEc--CCCC---ceEEEEEHHHHHhHhcc---C--------CCCH
Confidence 445664 799999999999999999999999999994 2223 69999999999864321 0 0112
Q ss_pred ccccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCccccc
Q 010821 350 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMT 429 (500)
Q Consensus 350 ~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~ 429 (500)
+++|+ ++..+++++++.++++.|.+++.+..+|+|+.|.++|+||..||+..+....+...+..
T Consensus 258 ------------~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d~~--- 321 (408)
T TIGR03520 258 ------------QSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDE--- 321 (408)
T ss_pred ------------HHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCCcC---
Confidence 22244 57899999999999999999999999999999999999999999986644332211100
Q ss_pred HHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhc
Q 010821 430 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLAN 469 (500)
Q Consensus 430 v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~ 469 (500)
.+.+. -.....+.+....++.++.+.|--
T Consensus 322 -~~~i~----------~~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 322 -DLIYS----------KIDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred -ccceE----------EeCCCeEEEEeccCHHHHHHHhCC
Confidence 11010 012345667778888888888743
No 158
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.11 E-value=7.9e-10 Score=95.38 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=84.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHh--hcccCCCCcccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG 355 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~--~~~~~~~~~~~l~~~v~~l~i~ 355 (500)
+++++.+++++.+|++.|.+++.+.+||++ +++ +++|+++..|+++.... ..... ......++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d---~~~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v------ 66 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVD---SDD---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTV------ 66 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEc---CCC---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEH------
Confidence 467899999999999999999999999993 345 79999999999852210 00000 00011223
Q ss_pred ccCcccCCCCCCCceEe------cCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHH
Q 010821 356 TWVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 413 (500)
Q Consensus 356 ~~~~~v~d~m~~~~~~v------~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~ 413 (500)
.++|.++...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+++
T Consensus 67 ------~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 67 ------ADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ------HHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 33465544332 368899999999999999999999986 79999999999864
No 159
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.11 E-value=9.6e-10 Score=91.79 Aligned_cols=108 Identities=20% Similarity=0.394 Sum_probs=85.9
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++++...... ...++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~---~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~-------- 59 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD---D-G---RVVGSIDESDLLDALIEGKAK-------FSLPV-------- 59 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee---C-C---eeEEEEeHHHHHHHHhccccc-------cCcCH--------
Confidence 467899999999999999999999999993 3 5 799999999999876432110 01222
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|.+++.++++++++.+++++|.+ . ..+||++++|+++|++|.+|++.
T Consensus 60 ----~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 60 ----REVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred ----HHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 23366678899999999999999987 3 34788988899999999999874
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.11 E-value=9e-10 Score=116.47 Aligned_cols=165 Identities=18% Similarity=0.239 Sum_probs=117.0
Q ss_pred EeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCC
Q 010821 210 MAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPND 286 (500)
Q Consensus 210 ~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~ 286 (500)
..||+... .+.+|..+++..+...+--+ .+.+.++. ...++..+.. ..+ +.++++++.+++
T Consensus 54 ~~Pivsa~----M~~vt~~~lA~Ama~aGGiGfI~~~as~E~q----~~~Irkvk~~------~~g--mi~dpvtV~pd~ 117 (505)
T PLN02274 54 SIPCVSSP----MDTVTESDMAIAMAALGGIGIVHYNNTAEEQ----AAIVRKAKSR------RVG--FVSDPVVKSPSS 117 (505)
T ss_pred CCCEeccC----CcccchHHHHHHHHhCCCeEEEcCCCCHHHH----HHHHHHhhcc------ccc--ccCCCeeeCCCC
Confidence 46777432 46778888887776654211 11222221 1112222211 112 567889999999
Q ss_pred cHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCCC
Q 010821 287 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR 366 (500)
Q Consensus 287 sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~ 366 (500)
++.+|+++|.+++++.+||++....++ +++|+||..||.... ....++. ++|+
T Consensus 118 tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v~------------~~~~~V~------------eIMt 170 (505)
T PLN02274 118 TISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFVN------------DRETKLS------------EVMT 170 (505)
T ss_pred cHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhcc------------ccCCcHH------------HHhc
Confidence 999999999999999999994211135 899999999996310 1123343 4477
Q ss_pred CC--ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 367 RP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 367 ~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
++ ++++.+++++.+|+++|.++++..+||+|++++++|+||++||++....
T Consensus 171 ~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 171 SDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred cCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 65 8899999999999999999999999999999999999999999986643
No 161
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.11 E-value=1.4e-09 Score=90.50 Aligned_cols=105 Identities=22% Similarity=0.432 Sum_probs=87.4
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
++++++.++.++.+|++.|.+++...+||++ + + +++|+++..+++.. . ...++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~------~-------~~~~~------- 54 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK------D-------PDETV------- 54 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc------C-------ccccH-------
Confidence 3577899999999999999888888999993 3 5 79999999998741 0 01223
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+++|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 55 -----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 55 -----EEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred -----HHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 3346677889999999999999999999999999999999999999999874
No 162
>PRK11573 hypothetical protein; Provisional
Probab=99.10 E-value=1.2e-09 Score=113.44 Aligned_cols=122 Identities=14% Similarity=0.236 Sum_probs=100.5
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+++++|.+ .+++++.++++.++++.+.+++++++||.+++ ++++|++..+|++.....+. ......+..
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~-------~~~~~~l~~- 259 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-------EFTKENMLR- 259 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccC-------cCCHHHHHh-
Confidence 56777864 58999999999999999999999999999764 78999999999987543221 112222221
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
+ .+++..++++.++.++++.|.+++.|-..|||+ .|...|+||+.||+..++|
T Consensus 260 ---------~-~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 260 ---------A-ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred ---------h-ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC
Confidence 1 257889999999999999999999999999995 7999999999999999886
No 163
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=1.3e-09 Score=90.45 Aligned_cols=102 Identities=20% Similarity=0.398 Sum_probs=85.7
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.++++.|.+++.+.+||++ ++ +++|+++..++++.. ...++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d----~~---~~~Giv~~~~l~~~~-------------~~~~~-------- 53 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE----DG---KLVGIITSRDVRRAH-------------PNRLV-------- 53 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE----CC---EEEEEEehHHhhccc-------------ccCCH--------
Confidence 467789999999999999999999999993 25 799999999997521 01122
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 412 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~ 412 (500)
.++|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 54 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 54 ----ADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ----HHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 2336677889999999999999999999999999997 9999999999986
No 164
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.10 E-value=1e-09 Score=91.76 Aligned_cols=106 Identities=21% Similarity=0.348 Sum_probs=85.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++.+.+++++.++++.|.+++...+||++ +++ +++|+++..+++... ....++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~------------~~~~~v-------- 56 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVD---DDG---KLVGIVTNRDLRFET------------DLDKPV-------- 56 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEc---CCC---EEEEEEEhhHeeecc------------cCCCCH--------
Confidence 567899999999999999999999999993 336 799999999986310 011222
Q ss_pred CcccCCCCCCCceEecC-CCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~-~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 57 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 57 ----SEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred ----HHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 3336555566666 999999999999999999999998899999999999864
No 165
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.09 E-value=8.3e-10 Score=116.54 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=90.8
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358 (500)
Q Consensus 279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 358 (500)
.+++.+++++.+|+++|.+++++.+||++...+++ +++|++|..||... . ...+.++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~-----~------~~~~~~V--------- 163 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS-----R------MSLDTKV--------- 163 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc-----c------cCCCCCH---------
Confidence 36899999999999999999999999995211246 89999999998521 0 0122334
Q ss_pred cccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 359 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 359 ~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
+++|++ +++++.+++++.+|+++|.++++..+||+|++++++|+||.+|+++.
T Consensus 164 ---~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 164 ---KDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred ---HHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 444875 78899999999999999999999999999988999999999999874
No 166
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.09 E-value=2.5e-09 Score=88.95 Aligned_cols=111 Identities=25% Similarity=0.487 Sum_probs=90.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.++++.|.+++.+.+||++ +++ +++|+++.+++++++........ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~G~v~~~~l~~~~~~~~~~~~-------~~--------- 59 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD---DDG---RLVGIVTERDLLRALAEGGLDPL-------VT--------- 59 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEEC---CCC---CEEEEEeHHHHHHHHHhccCCcc-------cc---------
Confidence 467789999999999999999999999993 335 79999999999987754322110 00
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+.++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 ---VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ---HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 12335667888999999999999999999999999999999999999999864
No 167
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.09 E-value=1.6e-09 Score=90.81 Aligned_cols=102 Identities=15% Similarity=0.299 Sum_probs=83.2
Q ss_pred cCCCCcHHHHHHHHHhcC-----CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 282 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 282 v~~~~sl~~a~~~m~~~~-----i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
+.+++++.++++.|.+++ +..+||++ +++ +++|+++.+++++. . .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd---~~~---~~~G~v~~~~l~~~------------~-~~~~v------- 55 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD---EEG---RLLGVVSLRDLLLA------------D-PDTPV------- 55 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC---CCC---CEEEEEEHHHHhcC------------C-CcchH-------
Confidence 578899999999998877 47899993 345 69999999998731 0 01222
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
++++..++..+.+++++.++++.|...+...+||+|++|+++|+|+..|+++.
T Consensus 56 -----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 56 -----SDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred -----HHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 33466778899999999999999999999999999988999999999999863
No 168
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.08 E-value=7.5e-10 Score=113.64 Aligned_cols=120 Identities=22% Similarity=0.345 Sum_probs=101.7
Q ss_pred CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccc
Q 010821 272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 351 (500)
Q Consensus 272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 351 (500)
+..+..+++++++.+++.+|+..|.++|++++.+++ .++ ...||+|.+|+...+....+. ..+
T Consensus 152 ~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~---~~~---~~~GIvT~~dl~~~v~~~g~~-------~~~---- 214 (610)
T COG2905 152 GEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD---DSG---PLLGIVTRKDLRSRVIADGRS-------KTQ---- 214 (610)
T ss_pred HHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc---CCC---CccceeehHHHHHHHHhcCCC-------ccc----
Confidence 345678899999999999999999999999898883 334 589999999999887653221 123
Q ss_pred ccccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 352 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 352 l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
+|+++|+.+++++...+.+.+|.-+|.+++++++||++ +|+++|++|..||+.+...
T Consensus 215 --------~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 215 --------KVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ 271 (610)
T ss_pred --------chhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence 44566999999999999999999999999999999996 7999999999999987653
No 169
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.07 E-value=2.1e-09 Score=113.69 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=114.8
Q ss_pred eEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCC
Q 010821 209 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 285 (500)
Q Consensus 209 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~ 285 (500)
...|++... ..-+|...++..+...+.-+ .+++.++.. ..++.++.. ...+..+++++.++
T Consensus 49 l~~Pii~a~----M~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~----~~v~kvk~~--------e~g~i~dpvtv~pd 112 (495)
T PTZ00314 49 LKIPIVSSP----MDTVTEHKMAIAMALMGGIGVIHNNCSIEEQV----EEVRKVKRF--------ENGFIMDPYVLSPN 112 (495)
T ss_pred cCCceeecC----ccccccHHHHHHHHHCCCeEEecCCCCHHHHH----HHHhhcccc--------ccccccCCeecCCC
Confidence 456887532 55677777776666554211 223222211 112222211 11245677899999
Q ss_pred CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCCC
Q 010821 286 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 365 (500)
Q Consensus 286 ~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m 365 (500)
+++.+|+++|.+++++.+||++.+..++ +++|+++.+|+.. . . ....++ .++|
T Consensus 113 ~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~-----~------~~~~~V------------~diM 165 (495)
T PTZ00314 113 HTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-V-----K------DKSTPV------------SEVM 165 (495)
T ss_pred CCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-c-----c------cCCCCH------------HHhh
Confidence 9999999999999999999995211135 8999999999862 1 0 012233 3448
Q ss_pred CC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 366 RR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 366 ~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
++ +++++.+++++.+|+++|.++++..+||+|++++++|+||++||++.
T Consensus 166 t~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 166 TPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKN 216 (495)
T ss_pred CCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhc
Confidence 76 78999999999999999999999999999999999999999999975
No 170
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.06 E-value=2.2e-09 Score=89.19 Aligned_cols=100 Identities=15% Similarity=0.267 Sum_probs=84.2
Q ss_pred eecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCc
Q 010821 280 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 359 (500)
Q Consensus 280 v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~ 359 (500)
+++.+++++.+|++.|.+.+...+||++ + + +++|+++..++++.. ..++
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~G~v~~~~l~~~~--------------~~~~---------- 52 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD---Y-N---KFLGAVYLKDIENAT--------------YGDV---------- 52 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE---C-C---EEEEEEEHHHHhhhc--------------ccch----------
Confidence 5689999999999999999999999993 3 6 799999999997521 0112
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|...+.++.++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 53 --~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 53 --VDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred --hhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 223666788999999999999999999999999998 689999999999864
No 171
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.05 E-value=2.6e-09 Score=94.51 Aligned_cols=126 Identities=27% Similarity=0.480 Sum_probs=94.3
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcc-c---CCCCcccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-H---CSSSLPILKLPICAIP 353 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~-~---~~~~~~~l~~~v~~l~ 353 (500)
+++++.+++++.+|++.|.+++++.+||++ + + +++|+++..++++++..... . .+.....+..++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLD--G--G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF- 73 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeE--C--C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe-
Confidence 567899999999999999999999999994 2 5 79999999999987753321 0 000011112222111
Q ss_pred cccc-----------CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 354 VGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 354 i~~~-----------~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ |+++|+++.+|++.
T Consensus 74 -~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 -INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred -eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 11345667778999999999999999999999999999987 89999999999863
No 172
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.04 E-value=3.1e-09 Score=90.49 Aligned_cols=119 Identities=15% Similarity=0.289 Sum_probs=89.8
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
++.++.+++++.+|++.|.+.+.+++||++ +++ +++|+++..++++.....+.... ..++ ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d---~~~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVD---EEG---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEEC---CCC---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 467889999999999999999999999993 335 79999999999875432211100 0000 0000
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
...+.++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 01233446678899999999999999999999999999986 99999999999864
No 173
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.03 E-value=3.5e-09 Score=88.41 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=85.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCC--CCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 355 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~--~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 355 (500)
....+.+++++.++.+.|.+.+...+||++ .. ++ +++|+++.+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~---------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN---------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence 356789999999999999998889999993 32 46 79999999999865431
Q ss_pred ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+|.+++.++.+++++.++++.|.+++.+.+||++ +|+++|+++++|+.+
T Consensus 56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred --------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 1556788999999999999999999999999995 789999999999875
No 174
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.01 E-value=3.6e-09 Score=89.89 Aligned_cols=113 Identities=12% Similarity=0.195 Sum_probs=87.0
Q ss_pred CceecCCCCcHHHHHHHHHhcC-CceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~-i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
++.++.+++++.+|++.|.+++ .+.+||++ + + +++|+++..++++++...+... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd---~-~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~--------- 61 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD---D-G---RPVGLIMREALMELLSTPYGRA----LYGKK--------- 61 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE---C-C---eeEEEEEHHHHHHHHhchhhHH----HHcCC---------
Confidence 4667899999999999998877 88999994 3 6 7999999999987654221000 00011
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCC---EEEEEcCCCcEEEEEeHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~---~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++++|..++.++.+++++.++++.|.+++.. ..+|++++|+++|+|+..|++.
T Consensus 62 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 ---PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ---cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 23445778899999999999999999887753 4468888899999999999864
No 175
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.99 E-value=5.2e-09 Score=113.77 Aligned_cols=118 Identities=16% Similarity=0.276 Sum_probs=96.3
Q ss_pred ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821 274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 353 (500)
Q Consensus 274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 353 (500)
+|.+++.++++++++.++++.|.+++.+.+||+| +++ +++|+++.+|+.+.+..... ....
T Consensus 452 im~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD---~~g---~lvGiVt~~dL~~~l~~~~~-------~~~~------ 512 (574)
T PRK01862 452 LIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD---DDG---RFRGAVALKDITSDLLDKRD-------TTDK------ 512 (574)
T ss_pred HhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc---CCC---eEEEEEEHHHHHHHhhcccc-------cccc------
Confidence 4677788999999999999999999999999993 345 79999999999875432100 0011
Q ss_pred ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC--CcEEEEEeHHHHHHHHH
Q 010821 354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 416 (500)
Q Consensus 354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~--g~lvGiis~~Di~~~~~ 416 (500)
.+.++|.+++.++++++++.++++.|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 513 ------~v~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 513 ------TAADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ------hHHHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 2344588888999999999999999999999999999876 48999999999998654
No 176
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.99 E-value=3.5e-09 Score=104.00 Aligned_cols=108 Identities=17% Similarity=0.250 Sum_probs=89.3
Q ss_pred ccCCC-ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccc
Q 010821 274 AFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 352 (500)
Q Consensus 274 ~~~~~-~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 352 (500)
+|.++ +..+.+++++.+|++.|.+.+++.+||++ +++ +++|+++..|+++.+... .....++
T Consensus 160 im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd---~~g---~~~Givt~~dl~~~~~~~--------~~~~~~v--- 222 (268)
T TIGR00393 160 LMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD---ENN---QLVGVFTDGDLRRALLGG--------GSLKSEV--- 222 (268)
T ss_pred HhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe---CCC---CEEEEEEcHHHHHHHhcC--------CcccCcH---
Confidence 46667 88999999999999999999999999993 345 799999999998754311 0112333
Q ss_pred cccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 010821 353 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 407 (500)
Q Consensus 353 ~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis 407 (500)
.++|.+++.++.+++++.+|+++|.+.+...+||+|++|+++|+|+
T Consensus 223 ---------~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 223 ---------RDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred ---------HHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 3448888999999999999999999999999999998899999985
No 177
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.96 E-value=1.9e-08 Score=97.59 Aligned_cols=109 Identities=16% Similarity=0.312 Sum_probs=94.2
Q ss_pred CCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 277 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 277 ~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
....++.+++++.+-.++..+.+.+|+||++ ... +++|++|.+|++.. ..+.++
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn---~~~---kvvGvVt~rDv~~~-------------~~~t~i------- 251 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVN---RSM---KVVGVVTMRDVLDK-------------KPSTTI------- 251 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceec---ccc---eEEEEEEehhhhcC-------------CCCccH-------
Confidence 4677899999999999999999999999993 344 79999999999831 113334
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 416 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~ 416 (500)
..+|+++++++.+.++++.+.+.|.-.++.-+||+|++.+++|+||++|+++.+.
T Consensus 252 -----eKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 252 -----EKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred -----HHHhccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 3349999999999999999999999999999999999999999999999998654
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.91 E-value=1.6e-08 Score=105.88 Aligned_cols=119 Identities=19% Similarity=0.321 Sum_probs=98.8
Q ss_pred cCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEc-CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821 361 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 361 v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd-~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
++++|++ ++..++.+.++.++.+.+.+++++++||++ +.+.++|++..+|++.....+.. . ......
T Consensus 208 v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~---- 277 (429)
T COG1253 208 VREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL---- 277 (429)
T ss_pred eeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc----
Confidence 4555764 588899999999999999999999999999 45799999999999986654321 0 111111
Q ss_pred CCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 438 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 438 ~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
-++++.++++.++.++++.|.+.+.|-..|+|+ -|.+.|+||+.||+..++|
T Consensus 278 ----------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 ----------VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred ----------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence 137889999999999999999999999999995 7999999999999999986
No 179
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.90 E-value=7.4e-09 Score=107.07 Aligned_cols=115 Identities=16% Similarity=0.303 Sum_probs=100.2
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHH-----CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHH
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 434 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l 434 (500)
.+|.+|+..++++.++.|+.+++..+++ ..+..++|+|++++++|+++.++++..- .+..+.++|
T Consensus 133 taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~----------~~~~i~~im 202 (451)
T COG2239 133 TAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE----------PDELLKDLM 202 (451)
T ss_pred hhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC----------cHhHHHHHh
Confidence 5577799999999999999999999984 3468899999999999999999997531 135666654
Q ss_pred hcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 435 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 435 ~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
.+.++++.++++.+++.+.+.+++.-.+||||+ +++++|+||..|++..+
T Consensus 203 -------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi 252 (451)
T COG2239 203 -------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVI 252 (451)
T ss_pred -------------cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHH
Confidence 667999999999999999999999999999996 79999999999998765
No 180
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.87 E-value=3.7e-08 Score=81.86 Aligned_cols=104 Identities=23% Similarity=0.400 Sum_probs=84.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
+++++.++.++.+++..|.+.+.+.+||++ +++ +++|+++.+++++.. . ..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~---~~~g~v~~~~l~~~~----~---------~~~~-------- 54 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK---KSG---ELVGIITRKDLLRNP----E---------EEQL-------- 54 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEc---CCC---cEEEEEEHHHHHhcc----c---------cchH--------
Confidence 467889999999999999998999999993 235 799999999987410 0 0112
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
.++|..++.++.+++++.++++.|.+.+.+.+||+|+ |+++|+++..|++.
T Consensus 55 ----~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 55 ----ALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred ----HHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 2235567888999999999999999999999999984 79999999999864
No 181
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.85 E-value=5.2e-09 Score=76.96 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=50.8
Q ss_pred ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
+|.++++++++++++.+|++.|.+++.+++||+|+ +|+++|+||.+||++++++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence 56889999999999999999999999999999995 7999999999999999864
No 182
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.83 E-value=3.1e-08 Score=86.54 Aligned_cols=113 Identities=16% Similarity=0.178 Sum_probs=78.6
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcc-ccc---ccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP-ILK---LPICAIP 353 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~-~l~---~~v~~l~ 353 (500)
.++++.+++++.+|++.|.+++++.+||++ +++ +++|++|..|+++++............ .+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD---~~g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD---SDD---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC---CCC---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 467899999999999999999999999993 345 799999999999877542211000000 000 0011110
Q ss_pred ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC
Q 010821 354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 399 (500)
Q Consensus 354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~ 399 (500)
.. ..+.+.|..+++++.+++++.+|+++|.+++++.+||+|++
T Consensus 76 ~~---~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 TK---GISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred hh---hhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 00 00112245678899999999999999999999999999864
No 183
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.80 E-value=1e-08 Score=75.33 Aligned_cols=54 Identities=30% Similarity=0.529 Sum_probs=50.5
Q ss_pred CCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821 362 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 415 (500)
Q Consensus 362 ~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~ 415 (500)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|++|.+||++.+
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l 55 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKAL 55 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhh
Confidence 456888999999999999999999999999999999999999999999999865
No 184
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.79 E-value=5.5e-08 Score=102.97 Aligned_cols=113 Identities=12% Similarity=0.196 Sum_probs=89.3
Q ss_pred ccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccc
Q 010821 274 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 353 (500)
Q Consensus 274 ~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 353 (500)
+|.++++++.+++++.+|++.|.+++++.+||++ +++ +++|+|+..|+++.+..... ....++
T Consensus 340 im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd---~~~---~~~Givt~~dl~~~~~~~~~-------~~~~~v---- 402 (454)
T TIGR01137 340 LHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT---EAG---KVLGSVTLRELLSALFAGKA-------NPDDAV---- 402 (454)
T ss_pred hCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc---CCC---eEEEEEEHHHHHHHHhccCC-------CcCCCH----
Confidence 4677899999999999999999999999999993 345 79999999999976543100 011223
Q ss_pred ccccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 354 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 354 i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
.++|.+++.++++++++.+++++|.+++ .+||+++++++|+||++|++..
T Consensus 403 --------~~im~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~ 452 (454)
T TIGR01137 403 --------SKVMSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSF 452 (454)
T ss_pred --------HHhcCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHh
Confidence 3447778889999999999999998754 3455557999999999999875
No 185
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.75 E-value=3.5e-08 Score=78.25 Aligned_cols=72 Identities=29% Similarity=0.411 Sum_probs=58.9
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCC-ceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSEYGI 100 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~-g~~~ykf~VDg~w~~d~~~~~~~~~~g~ 100 (500)
.++|. |..+|++|.|.++|++|....+|.+. .+|.|++.+++.. |.|.|+|.|||.|.+++.++...+....
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~ 78 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSG 78 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcc
Confidence 46777 77778999999999997666789774 4699999999988 9999999999999999887655444333
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.74 E-value=4.9e-07 Score=92.21 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=91.1
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCccccc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 447 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im 447 (500)
......++.+..++++.|...+...+.|+|+++++.|.++..++....... ..+.+.+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~------------- 308 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL------------- 308 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh-------------
Confidence 344566777899999999999999999999999999999999987755432 3345433
Q ss_pred CCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821 448 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 448 ~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
...+.++.++++|.+++..|.+++.. +||||+ +|+++|+||..+|++++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 309 IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY 358 (363)
T ss_pred ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 45677899999999999999999998 999996 799999999999999875
No 187
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.68 E-value=1e-07 Score=78.48 Aligned_cols=65 Identities=25% Similarity=0.535 Sum_probs=50.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc--------CCc-eEEEEEEE-CCEE--eeCCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQP 92 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L--------~~g-~~~ykf~V-Dg~w--~~d~~~~ 92 (500)
-++|+ |...|++|+|+|+||+|+.. .+|.|. ..|+|++.++. +.| .|.|++.. ||+| +.||-+.
T Consensus 6 g~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 6 GVTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred eEEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 36777 99999999999999999874 589884 47999999874 344 56666666 7875 6777765
Q ss_pred e
Q 010821 93 F 93 (500)
Q Consensus 93 ~ 93 (500)
.
T Consensus 84 ~ 84 (99)
T cd02854 84 Y 84 (99)
T ss_pred E
Confidence 4
No 188
>PRK11573 hypothetical protein; Provisional
Probab=98.66 E-value=8.1e-07 Score=92.32 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=120.7
Q ss_pred HhhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCCh
Q 010821 167 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTE 246 (500)
Q Consensus 167 l~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~ 246 (500)
|++.++.|+|-.-.+++.++.+.++.++++.+.+. +.+..||++.+..+++|++...|++..+.. ....
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~-----~~SR~PVy~~~~D~IiGiv~~kDll~~~~~----~~~~-- 252 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHS-----PHGRIVLYRDSLDDAISMLRVREAYRLMTE----KKEF-- 252 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhC-----CCceEEEEcCCCCceEEEEEHHHHHHHhhc----cCcC--
Confidence 45778899988888999999999999999999999 999999998877899999999999864321 0100
Q ss_pred hhhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhh
Q 010821 247 EELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSG 326 (500)
Q Consensus 247 ~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~d 326 (500)
....+.+ ..+++..++++.++.++++.|++++.|-+.|+| +.| ...|+||..|
T Consensus 253 ------~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleD 305 (413)
T PRK11573 253 ------TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVED 305 (413)
T ss_pred ------CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHH
Confidence 1111111 134678999999999999999999999999994 445 5899999999
Q ss_pred HHHHHHhhcccCCCCccccccccccccccccCcccCCCCCCCceEecCCCCHHHHHHHH
Q 010821 327 ILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 385 (500)
Q Consensus 327 Il~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m 385 (500)
|++.+......... ......+..+ ......++...++.++.+.+
T Consensus 306 ilEeivGei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 306 ILEEIVGDFTTSMS--PTLAEEVTPQ-------------NDGSVIIDGTANVREINKAF 349 (413)
T ss_pred HHHHHhCCCCcccC--cccccceEEe-------------cCCEEEEEeeeEHHHHHHHh
Confidence 99988765433110 0000111111 12345677777888877766
No 189
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=3.8e-07 Score=94.18 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=88.1
Q ss_pred ecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCc
Q 010821 372 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 451 (500)
Q Consensus 372 v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~ 451 (500)
..++.+..+++..|...+.+.++|+|++++++|+++..++......+ .++.+++ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 34667889999999999999999999999999999999997654432 2345443 3467
Q ss_pred eEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010821 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 452 ~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~ 499 (500)
.++.++++|.+++..|..+... +||||+ +|+++|+||..++++.+.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALD 393 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 8899999999999999998776 999996 799999999999999874
No 190
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.63 E-value=1.2e-07 Score=87.38 Aligned_cols=120 Identities=15% Similarity=0.371 Sum_probs=102.0
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+|+++|.+ ..+++..+.++.+++..+.+...+++||+.+ .+.+.|++-.+||+.++..... ...+.+++
T Consensus 68 ~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL-- 139 (293)
T COG4535 68 RVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL-- 139 (293)
T ss_pred hHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc--
Confidence 44566754 4788999999999999999999999999975 4589999999999997665421 24566655
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
+|.+.++++-.+...++-+...+.|...|||+ =|-+-|.||..||+..++|
T Consensus 140 ------------RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 ------------RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ------------ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence 57889999999999999999999999999995 6899999999999999986
No 191
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.55 E-value=6e-07 Score=88.95 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=117.2
Q ss_pred CCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCC---CCCChhhhcccchhHHHHHHHhhccccCCCCcccCCCceecC
Q 010821 207 GISMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAG 283 (500)
Q Consensus 207 ~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~l~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~ 283 (500)
.-...|++.+ ....+|..+.+.++..+...+ -|-+.|. ..-.+..|+..+.. ...+++.+.
T Consensus 59 itl~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g-----------~~~~p~v~s 122 (503)
T KOG2550|consen 59 ITLNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENG-----------FINNPIVIS 122 (503)
T ss_pred ccccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhcc-----------cccCCcccC
Confidence 4456688764 366788888777766554211 1122111 11123344443332 234678899
Q ss_pred CCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCC
Q 010821 284 PNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGE 363 (500)
Q Consensus 284 ~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d 363 (500)
|+.++.++++....+++..+||.... .. .++|+|+||-+||- |+.++ ... +.+
T Consensus 123 p~~tvg~v~~~k~~~gF~g~pvTe~g-~~--~~KLvG~vtsrdi~-f~~~~-----------~~~------------~~~ 175 (503)
T KOG2550|consen 123 PTTTVGEVKEAKEKHGFSGIPVTEDG-KR--GSKLVGIITSRDIQ-FLEDN-----------SLL------------VSD 175 (503)
T ss_pred CcccchhhhhhcccccccccccccCC-cc--cceeEEEEehhhhh-hhhcc-----------cch------------hhh
Confidence 99999999999999999999999421 11 24899999999984 44211 122 244
Q ss_pred CCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHH
Q 010821 364 PNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 414 (500)
Q Consensus 364 ~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~ 414 (500)
+|+.+.++.+...++.++-+++.+.+...+||||++|+++.++++.||.+.
T Consensus 176 vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 176 VMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred hcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 588888999999999999999999999999999999999999999999874
No 192
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.51 E-value=2.5e-06 Score=89.37 Aligned_cols=117 Identities=16% Similarity=0.217 Sum_probs=94.6
Q ss_pred CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821 276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 355 (500)
Q Consensus 276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 355 (500)
..++++++.+.++.++++.+.+++.+|+||++ ++.+ .++|++..+|++........ . .....
T Consensus 215 R~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D----~iiGiv~~Kdll~~~~~~~~-~----~~~~~-------- 276 (429)
T COG1253 215 RTDIVALDLTDTVEELIELILESGHSRIPVYD-GDLD----NIIGIVHVKDLLRALLDGQS-D----LDLRV-------- 276 (429)
T ss_pred cccEEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCC----cEEEEEEHHHHHHHHhcCcc-c----cchhh--------
Confidence 45789999999999999999999999999995 2333 59999999999987654311 0 00000
Q ss_pred ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccc
Q 010821 356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKA 419 (500)
Q Consensus 356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~ 419 (500)
.-++++.++++.++.++++.|.+.+.+-..|+|+-|...|+||..||+..+....
T Consensus 277 ---------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei 331 (429)
T COG1253 277 ---------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEI 331 (429)
T ss_pred ---------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCC
Confidence 1127889999999999999999999999999999999999999999998665543
No 193
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.49 E-value=8e-07 Score=87.47 Aligned_cols=122 Identities=15% Similarity=0.257 Sum_probs=101.1
Q ss_pred ccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcC-CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 360 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 360 ~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~-~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+|.|+|.+ ++..+..+++..++.+.+.+..+.++|+..+ -+.++|++..+|+++++.++.. .+-.++++.
T Consensus 201 tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~ 273 (423)
T COG4536 201 TVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA 273 (423)
T ss_pred eeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH
Confidence 56777864 5888999999999999999999999999854 3479999999999998776531 122233321
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
-.+++.++++++|.+-+..|.+++.|.-.|||+ =|.+.|+||+.||+..++|
T Consensus 274 -----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 -----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred -----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc
Confidence 247889999999999999999999999999996 6999999999999999886
No 194
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.46 E-value=3.7e-07 Score=94.84 Aligned_cols=149 Identities=19% Similarity=0.334 Sum_probs=112.0
Q ss_pred ccccccccccCc-------ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCC-----CcEEEEEeHHHHHHHH
Q 010821 348 PICAIPVGTWVP-------KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-----DSLLDIYCRSDITALA 415 (500)
Q Consensus 348 ~v~~l~i~~~~~-------~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-----g~lvGiis~~Di~~~~ 415 (500)
.++.+|+-.|.+ +++|+|..+++++..-+.+..+.+++....++.+||+|+. +++.|+|-++.++.++
T Consensus 564 ~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 564 QLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 345555555543 5689999999999999999999999999999999999862 5899999999999887
Q ss_pred Hccccccc--Cccc------ccHHHHHhcCCC---CCCc----------ccccCCCceEeCCCCCHHHHHHHHhcCCCCE
Q 010821 416 KDKAYAHI--NLSE------MTIHQALQLGQD---SYSP----------YELRSQRCQMCLPSDTLHKVMERLANPGVRR 474 (500)
Q Consensus 416 ~~~~~~~~--~~~~------~~v~~~l~~~~~---~~~~----------~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~ 474 (500)
+++.+..- +..+ .+..++...... ..-. ..+|...++++.+++++..++..+.+-+.|+
T Consensus 644 ~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRh 723 (762)
T KOG0474|consen 644 KKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRH 723 (762)
T ss_pred HhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhccee
Confidence 76544321 1111 222222211100 0000 1368889999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEehHHHHHH
Q 010821 475 LVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 475 l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
+.||+. .++++|++|++|+.++
T Consensus 724 LlVv~~-~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 724 LLVVPK-TNRVVGILTRKDLARY 745 (762)
T ss_pred EEEecC-CCceeEEEehhhhhhH
Confidence 999995 6888999999999854
No 195
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.45 E-value=3.5e-07 Score=90.54 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=92.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcC---CCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcc
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 444 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~---~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~ 444 (500)
+++.+.|+.++.++++....+++..+||+.+ .++|+|+||.+|+-.+ .+. ...+.++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~v----------- 176 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDV----------- 176 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhh-----------
Confidence 5678899999999999999999999999964 3599999999999776 221 2556654
Q ss_pred cccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 445 ~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
|++..++...+.+|.++-+.+.+++...|||||+ +|.++.+|++.||.+.
T Consensus 177 --mt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 177 --MTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred --cccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 4667788899999999999999999999999996 7999999999999874
No 196
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.44 E-value=1.5e-07 Score=75.33 Aligned_cols=57 Identities=32% Similarity=0.599 Sum_probs=45.7
Q ss_pred eEEEE-ecCCCceEEEEEccCC-CCCC-CCCCcccCCCCeEEEEEE--cCCceEEEEEEECCE
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~-W~~~-~~m~~~~~~~~~~~~~~~--L~~g~~~ykf~VDg~ 84 (500)
-++|+ |...|++|.|++.|++ |... .+|.+. ..+|+|+++++ +++|.+.|+|.|||.
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~~-~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTRK-DDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEEE-CTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeeec-CCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 56777 9999999999999999 8754 588741 46899999999 888988888888764
No 197
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.21 E-value=2.2e-05 Score=80.22 Aligned_cols=109 Identities=11% Similarity=0.241 Sum_probs=87.1
Q ss_pred ceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccC
Q 010821 279 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 358 (500)
Q Consensus 279 ~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~ 358 (500)
.....++.+..+++..|..++...+.|++ +++ ++.|+++..++..++... ..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~--------- 304 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVD---RQN---KLVGVVDVESIKQARKKA------------QGL--------- 304 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEc---CCC---CEEEEEeHHHHHHHhhcC------------Cch---------
Confidence 34566777899999999999999999993 344 699999999987654321 111
Q ss_pred cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821 359 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 418 (500)
Q Consensus 359 ~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~ 418 (500)
.+.+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus 305 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 305 ---QDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred ---hhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 122444577899999999999999999998 99999999999999999999876543
No 198
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.15 E-value=2.6e-05 Score=76.99 Aligned_cols=131 Identities=18% Similarity=0.302 Sum_probs=105.7
Q ss_pred hhccccccCCCCcceEEEcCCCCHHHHHHHHHhcccccCCCeEeeeeeCCCCeEEEEeeHHHHHHHHHHhcCCCCCCChh
Q 010821 168 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQSSRLQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEE 247 (500)
Q Consensus 168 ~~~~~~d~~p~s~~vv~ld~~~~v~~A~~~l~~~~~~~~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~l~~~ 247 (500)
..-|+-|.|-.-+.++.+|.+.|.++..+.+... --..+|||..+..+.+|++-..|+++.+.+.. +...+
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s-----~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~ 268 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHS-----PHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKE 268 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhC-----CCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHh
Confidence 4567888887778999999999999999999998 78889999888788999999999988775431 12111
Q ss_pred hhcccchhHHHHHHHhhccccCCCCcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhH
Q 010821 248 ELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGI 327 (500)
Q Consensus 248 ~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dI 327 (500)
+ +.. ...++..|+..+++.+-+..|++++-|-..|+| +-| .+.|++|.+||
T Consensus 269 d--------~~~---------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDI 319 (423)
T COG4536 269 D--------ILR---------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDI 319 (423)
T ss_pred H--------HHH---------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHH
Confidence 1 111 133678999999999999999999988888893 556 79999999999
Q ss_pred HHHHHhhcc
Q 010821 328 LKCVCRYFR 336 (500)
Q Consensus 328 l~~l~~~~~ 336 (500)
++.+...|.
T Consensus 320 lEEIVGdft 328 (423)
T COG4536 320 LEEIVGDFT 328 (423)
T ss_pred HHHHhcccc
Confidence 998876654
No 199
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.14 E-value=4.8e-05 Score=70.50 Aligned_cols=117 Identities=13% Similarity=0.139 Sum_probs=95.3
Q ss_pred cCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccc
Q 010821 275 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 354 (500)
Q Consensus 275 ~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 354 (500)
.....+++..+.++.+++..|.+..-+|+||+.. +.. .+.||+-.+|+++++...... -.+++
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e--dkD---~v~GIL~AKDLL~~~~~~~~~---------F~i~~--- 137 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISE--DKD---HVEGILLAKDLLPFMRSDAEP---------FDIKE--- 137 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccC--Cch---hhhhhhhHHHHHHHhcCCccc---------ccHHH---
Confidence 4557899999999999999999999999999952 222 599999999999987643211 11222
Q ss_pred cccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821 355 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 418 (500)
Q Consensus 355 ~~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~ 418 (500)
+-+|.+.|+++-.+.-.++.+...+.+-.+|+|+-|-+-|+||..|++..+-..
T Consensus 138 ----------lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGd 191 (293)
T COG4535 138 ----------LLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGD 191 (293)
T ss_pred ----------hcccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcc
Confidence 235788899999999999999999999999999999999999999999866543
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=4.9e-05 Score=78.62 Aligned_cols=106 Identities=11% Similarity=0.164 Sum_probs=84.3
Q ss_pred ecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcc
Q 010821 281 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPK 360 (500)
Q Consensus 281 ~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~ 360 (500)
...++.+..+|+..|..++...+.|++ +++ +++|+++..++.+..... ..+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~g~~~~~~~~~~~~~~------------~~~~---------- 340 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIE---RGN---KFVGAVSIDSLKTALTQQ------------QGLD---------- 340 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEc---CCC---cEEEEEeHHHHHhhhhcC------------Cchh----------
Confidence 345677899999999999999999993 445 799999999997654211 1121
Q ss_pred cCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc
Q 010821 361 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 361 v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~ 417 (500)
+.+.....++.+++++.+++..+.+.... +||+|++|+++|+|+..+++..+..
T Consensus 341 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 341 --AALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR 394 (400)
T ss_pred --hhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence 12344577899999999999999987766 9999999999999999999986654
No 201
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.90 E-value=3.7e-05 Score=63.54 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=49.2
Q ss_pred EEEE-ecCCCceEEEEEccCCCC-----CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCee
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI 94 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~~~ 94 (500)
++|. |...|++|.|+. |++|. ..++|.+ ..+|+|++.++ +.+|.+ |+|.|+|. ...||-...+
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 6775 999999999998 88886 3458877 45899999987 555654 88888775 7788877654
No 202
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.88 E-value=2.4e-05 Score=66.14 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=48.8
Q ss_pred ccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 360 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 360 ~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
+++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+++.+||.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 455668888999999999999999999999999999999999999999999863
No 203
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=6.9e-05 Score=63.28 Aligned_cols=50 Identities=20% Similarity=0.402 Sum_probs=45.3
Q ss_pred ccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 446 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 446 im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
+|.+.+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+||.+
T Consensus 63 im~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 63 VINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred hcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 44678889999999999999999999999999995 689999999999864
No 204
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.73 E-value=0.00025 Score=58.98 Aligned_cols=68 Identities=24% Similarity=0.455 Sum_probs=45.7
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEEC-CE--EeeCCCCCeeeC
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GE--WRHDEHQPFISS 96 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VD-g~--w~~d~~~~~~~~ 96 (500)
++|+ |..+|++|.|.++|++|... .+|.+.+ ..|.|.+.++ +++| .|.|++..+ |. .+.||...-++.
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~ 97 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSEL 97 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEe
Confidence 5666 99999999999999999653 5787642 3799999886 6666 444444443 33 344555543333
No 205
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.71 E-value=0.0001 Score=50.72 Aligned_cols=47 Identities=38% Similarity=0.578 Sum_probs=42.8
Q ss_pred ceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 451 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 451 ~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
+.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999995 58999999999998875
No 206
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.68 E-value=8.2e-05 Score=79.81 Aligned_cols=66 Identities=27% Similarity=0.538 Sum_probs=52.4
Q ss_pred eeEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE-----EeeCCCCCe
Q 010821 26 IPMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPF 93 (500)
Q Consensus 26 ~~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~~ 93 (500)
-.++|. |...++.|.|.|+||+|... .+|... +..|.|+++++ +++| +.|||.+++. ++.||..-.
T Consensus 36 ~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~~ 109 (628)
T COG0296 36 SGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYARR 109 (628)
T ss_pred CceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhhc
Confidence 468887 99999999999999999984 355432 25699999999 9999 9999999653 366666543
No 207
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00011 Score=76.96 Aligned_cols=142 Identities=15% Similarity=0.213 Sum_probs=103.3
Q ss_pred CcccCCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhh-cccCC-C--Ccccc--
Q 010821 272 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRY-FRHCS-S--SLPIL-- 345 (500)
Q Consensus 272 g~~~~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~-~~~~~-~--~~~~l-- 345 (500)
++++.++++++..-+.+....+.+.....+..||+|..+.+. ..++.|++-.+.++..+... |.+.. . ..+..
T Consensus 585 ~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~-~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~ 663 (762)
T KOG0474|consen 585 GEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNE-AGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRK 663 (762)
T ss_pred hhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCcc-chhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhc
Confidence 456888999999999999999999999999999996422221 23789999999988877543 11110 0 00000
Q ss_pred ---------ccccccccccccC----cccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHH
Q 010821 346 ---------KLPICAIPVGTWV----PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 412 (500)
Q Consensus 346 ---------~~~v~~l~i~~~~----~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~ 412 (500)
..+++++.+.... -.+..+|.+.+.++.+++++..++.++++-+.+.+.||++..+.+|++|++|+.
T Consensus 664 ~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~ 743 (762)
T KOG0474|consen 664 FTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLA 743 (762)
T ss_pred CCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhh
Confidence 1122333221110 023456778899999999999999999999999999999988999999999998
Q ss_pred HH
Q 010821 413 AL 414 (500)
Q Consensus 413 ~~ 414 (500)
..
T Consensus 744 ~~ 745 (762)
T KOG0474|consen 744 RY 745 (762)
T ss_pred hH
Confidence 53
No 208
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.59 E-value=0.00022 Score=49.03 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=42.3
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 415 (500)
Q Consensus 369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~ 415 (500)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999997653
No 209
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.58 E-value=0.00019 Score=58.81 Aligned_cols=56 Identities=25% Similarity=0.554 Sum_probs=44.0
Q ss_pred eeEEEEe---cCCCceEEEEEccC---CCCC--CCCCCcccC--CCCeEEEEEEcCCc-eEEEEEEE
Q 010821 26 IPMRFVW---PYGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 26 ~~~~f~~---~~~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
|.++|.- ...++.|+|+||.. +|++ .++|...+. ....|++++.||.| .++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 5667764 34489999999998 7997 468876532 45899999999998 69999999
No 210
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.56 E-value=0.00062 Score=55.55 Aligned_cols=45 Identities=24% Similarity=0.527 Sum_probs=37.5
Q ss_pred CCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
.|++|+|+|+ |.+|++. .+|... ..+.|++++.||+| .++|||++
T Consensus 13 ~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 13 WGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred CCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence 4799999995 8899864 578763 46789999999987 79999997
No 211
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.53 E-value=0.00063 Score=58.18 Aligned_cols=57 Identities=21% Similarity=0.449 Sum_probs=43.9
Q ss_pred eeEEEEec--CCCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEEC
Q 010821 26 IPMRFVWP--YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD 82 (500)
Q Consensus 26 ~~~~f~~~--~~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VD 82 (500)
+++.+..+ ..++.|+|+|+ +.+|++. .+|.+.....+.|++.+.||++ .++|||++.
T Consensus 3 v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 3 VTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred EEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 44555553 34799999999 9999854 5787642245789999999998 899999994
No 212
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.43 E-value=0.00034 Score=76.81 Aligned_cols=64 Identities=25% Similarity=0.523 Sum_probs=50.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEE---CCEEe--eCCCCCe
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQPF 93 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~V---Dg~w~--~d~~~~~ 93 (500)
-++|+ |...|++|+|+|+||+|+.. .+|.+. ..|+|++.++ +.+| ..|||.| ||.+. .||-+..
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~~ 210 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVARQ 210 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcceE
Confidence 46786 99999999999999999875 588763 5799999986 6777 3577777 78664 6776654
No 213
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.43 E-value=0.00035 Score=76.94 Aligned_cols=64 Identities=25% Similarity=0.421 Sum_probs=48.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc-------CCceEEEEEEE---CCE--EeeCCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-------PPGYHQYKFCV---DGE--WRHDEHQP 92 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-------~~g~~~ykf~V---Dg~--w~~d~~~~ 92 (500)
-++|+ |.+.|++|+|+|+||+|+.. .+|.+. ..|+|++.++- +.| ..|||.| ||. ++.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 56777 99999999999999999875 589874 47999999873 334 3677777 364 46777654
Q ss_pred e
Q 010821 93 F 93 (500)
Q Consensus 93 ~ 93 (500)
.
T Consensus 192 ~ 192 (758)
T PLN02447 192 Y 192 (758)
T ss_pred e
Confidence 3
No 214
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0013 Score=69.18 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=87.7
Q ss_pred ceEecCC-CCHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCC----CC
Q 010821 369 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD----SY 441 (500)
Q Consensus 369 ~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd--~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~ 441 (500)
+..++.+ .++.+...+|.+..++.+||+= +...++|++.++|+...+........-....+. .......+ .+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~-~f~~~~~~~~~~~~ 636 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSI-YFNDPSPSAVAGIP 636 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccc-ccCCCCccccCCCC
Confidence 5555554 8999999999999999899873 346899999999987533211000000001111 00000000 00
Q ss_pred Cc---ccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHh
Q 010821 442 SP---YELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 498 (500)
Q Consensus 442 ~~---~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l 498 (500)
.+ ..+|.-.+.++...++...+++++.+-+.+.+.|.. +|++.|+||..|++++.
T Consensus 637 ~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 637 SRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 01 136778899999999999999999999999998877 79999999999999863
No 215
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.32 E-value=0.0008 Score=55.87 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.5
Q ss_pred EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCE
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~ 84 (500)
++|. |...|++|.|+. |++|. ..++|.+. .+|+|++.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCc
Confidence 5675 999999999999 76664 33578763 4799999985 66665 799999994
No 216
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.29 E-value=0.00085 Score=73.97 Aligned_cols=67 Identities=21% Similarity=0.370 Sum_probs=49.8
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEE-CCEE--eeCCCCCeee
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPFIS 95 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~V-Dg~w--~~d~~~~~~~ 95 (500)
.++|+ |...|++|+|+|+||+|... .+|.+. ..|+|++.++ +.+| .|.|++.. +|.| +.||-.....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~~~ 112 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFYFE 112 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEEEe
Confidence 56776 99999999999999999875 588774 5799999998 4445 66666654 5765 4566555443
No 217
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.26 E-value=0.002 Score=53.05 Aligned_cols=57 Identities=19% Similarity=0.395 Sum_probs=42.8
Q ss_pred eeeEEEEecC----CCceEEEEE---ccCCCCCCC-CCCccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 25 ~~~~~f~~~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
.||++|.-.. .|++|+|+| ++.+|+... +|.... ...+.|++.+.||+| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 3788888532 378999999 677998742 343321 234789999999998 69999998
No 218
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.25 E-value=0.00091 Score=57.09 Aligned_cols=59 Identities=20% Similarity=0.399 Sum_probs=44.3
Q ss_pred EEEE-ecCCCceEEEEEccCCCC---C--CCCCCccc-CCCCeEEEEEE-cCCceEEEEEEECCEEeeC
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHD 88 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~~~~~~~-L~~g~~~ykf~VDg~w~~d 88 (500)
++|. |...|++|.|+. |++|. + .++|.+.+ +.+|+|++.++ +.+|. .|+|.|+|.|.-+
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~ 75 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPE 75 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCC
Confidence 5675 999999999999 99886 2 24665532 23699999986 67776 7999999975433
No 219
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.20 E-value=0.00068 Score=78.40 Aligned_cols=64 Identities=27% Similarity=0.598 Sum_probs=49.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEEC---CEE--eeCCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQP 92 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD---g~w--~~d~~~~ 92 (500)
-++|. |...|++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |.| +.||-..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA~ 710 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLAF 710 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCcccc
Confidence 56787 99999999999999999875 478763 34699999986 78885 6888884 554 4566543
No 220
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.16 E-value=0.0025 Score=51.72 Aligned_cols=62 Identities=23% Similarity=0.454 Sum_probs=45.1
Q ss_pred eeEEEEecC--C-CceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEE---CC--EEeeCCC
Q 010821 26 IPMRFVWPY--G-GRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EWRHDEH 90 (500)
Q Consensus 26 ~~~~f~~~~--~-~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V---Dg--~w~~d~~ 90 (500)
+.++|.-++ . |+.++|+|+-. +|++..+|... .+.|++.+.||+| .++|||++ || .|...++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~~~~~~~v~WE~g~N 75 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVIVKRDGSVIWEGGNN 75 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEEEcCCCCEEEEeCCC
Confidence 345555333 3 78999999874 89987777653 4679999999987 79999998 44 3655443
No 221
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.12 E-value=0.0052 Score=50.99 Aligned_cols=65 Identities=29% Similarity=0.575 Sum_probs=48.2
Q ss_pred eeeEEEEecC-----CCceEEEEEccC---CCCCCC-----CCCcccCCCCeEEEEEEcCCc-eEEEEEEE---CC--EE
Q 010821 25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPG-YHQYKFCV---DG--EW 85 (500)
Q Consensus 25 ~~~~~f~~~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V---Dg--~w 85 (500)
.||++|+-.. .|++++|+|+-. +|+... +|.. .....|++.+.||.| ..+|||++ || .|
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W 79 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLKAPADGTGTW 79 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence 3899999753 378999999866 898732 5654 345689999999998 69999998 44 36
Q ss_pred eeCCCC
Q 010821 86 RHDEHQ 91 (500)
Q Consensus 86 ~~d~~~ 91 (500)
...++.
T Consensus 80 E~g~Nr 85 (103)
T cd05820 80 EGGSNH 85 (103)
T ss_pred EeCCCE
Confidence 555443
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.10 E-value=0.006 Score=62.82 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcCCCCCCcccccCCCceEeCCCCCHHHHHHHH
Q 010821 388 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 467 (500)
Q Consensus 388 ~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m 467 (500)
++.+.+.|+|. |+++..+...+.+... ..++.+ + .....+++++++|.+++..+
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 351 (382)
T TIGR03415 298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR 351 (382)
T ss_pred cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence 78889999985 8888888765443211 123333 2 34577889999999999999
Q ss_pred hcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 468 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 468 ~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
.+++.. ++|+| +|+++|+|+..+|+.++.+
T Consensus 352 ~~~~~~-~~v~~--~~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 352 HRTGGA-ILLVE--NGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcCCCC-eEEee--CCeEEEEEeHHHHHHHHhc
Confidence 998754 88998 3999999999999998864
No 223
>PRK14706 glycogen branching enzyme; Provisional
Probab=97.08 E-value=0.0012 Score=72.40 Aligned_cols=65 Identities=31% Similarity=0.600 Sum_probs=49.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEEc-CCceEEEEEEECC---EE--eeCCCCCee
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPFI 94 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~L-~~g~~~ykf~VDg---~w--~~d~~~~~~ 94 (500)
-++|+ |...|++|+|+|+||+|... .+|.+. ..|+|++.++- .+| ..|||.|+| .+ +.||-+...
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~~ 111 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSFF 111 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEEE
Confidence 46776 99999999999999999875 588875 36999999873 455 468888854 43 677766543
No 224
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0078 Score=63.56 Aligned_cols=133 Identities=12% Similarity=0.119 Sum_probs=93.8
Q ss_pred CceecCCC-CcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCC--c-ccccccccccc
Q 010821 278 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSS--L-PILKLPICAIP 353 (500)
Q Consensus 278 ~~v~v~~~-~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~--~-~~l~~~v~~l~ 353 (500)
+++.+..+ .++.|...+|.+...+..||+-+ .+.. +++|++..+++.-.+.......... . -....+.....
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 46666666 89999999999999999999842 3334 7999999999887665321110000 0 01122222111
Q ss_pred ccc-cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHH
Q 010821 354 VGT-WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 415 (500)
Q Consensus 354 i~~-~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~ 415 (500)
-+. ..-..+++|...+.++...++..-+++++.+-+.+.+.|. ++|++.|+||.+|++...
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence 111 1114567788889999999999999999999999888776 589999999999998764
No 225
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.93 E-value=0.0093 Score=49.67 Aligned_cols=58 Identities=19% Similarity=0.431 Sum_probs=42.3
Q ss_pred ceeeEEEEec---CCCceEEEEEccC---CCCCC--CCCCccc--CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 24 VLIPMRFVWP---YGGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 24 ~~~~~~f~~~---~~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
..++++|.=. ..|+.|+|+|+-. +|++. .+|.... ...+.|++.+.||++ .++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 3466777633 3489999999865 79864 4775421 134789999999988 59999997
No 226
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.82 E-value=0.0031 Score=70.62 Aligned_cols=66 Identities=26% Similarity=0.492 Sum_probs=48.8
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCc-eEEEEEEEC-CEE--eeCCCCCe
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQPF 93 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VD-g~w--~~d~~~~~ 93 (500)
-++|+ |...|++|.|+|+||+|... .+|.+. ...|+|++.++ +++| .|.|++..+ |.| ..||-.-.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa~~ 204 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYAFA 204 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCceEE
Confidence 46787 99999999999999999864 588774 25799999986 6666 666666654 454 45554443
No 227
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.79 E-value=0.0072 Score=48.17 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=45.6
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEEC-CEEeeCCCCCee
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPFI 94 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VD-g~w~~d~~~~~~ 94 (500)
++|. |...|++|.|...+ |. ..+|.+. .+|.|++.+.-.+|. .|+|.|+ |..+.||.+...
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~~ 72 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRFQ 72 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCccccC
Confidence 5676 99999999999743 54 4688763 579999998733665 4777776 468888888753
No 228
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.67 E-value=0.019 Score=47.16 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=37.0
Q ss_pred CCCceEEEEEcc---CCCCCC--CCCCcccCCCCeEEEEEEcCCc--eEEEEEEE
Q 010821 34 YGGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV 81 (500)
Q Consensus 34 ~~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykf~V 81 (500)
..+++|+|+|+- .+|++. ++|... ....|++.+.+|++ .++|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence 358999999985 489964 578764 45789999999986 59999998
No 229
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0094 Score=58.45 Aligned_cols=168 Identities=17% Similarity=0.242 Sum_probs=110.0
Q ss_pred CCCceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccc
Q 010821 276 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 355 (500)
Q Consensus 276 ~~~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~ 355 (500)
.+.++.|+ -.|.||+++ -+++.++ ++| +++-+=|..+|+..-...+- ..+-..+....+
T Consensus 215 ~KTIvFit--HDLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV------~~Fv~~v~~~~V- 273 (386)
T COG4175 215 KKTIVFIT--HDLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYV------RDFVRNVDRSRV- 273 (386)
T ss_pred CCeEEEEe--cCHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHH------HHHHhcCChhhe-
Confidence 34455554 347777765 2678888 467 79998899988742111100 000001100000
Q ss_pred ccCcccCCCCCC--CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHH
Q 010821 356 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 433 (500)
Q Consensus 356 ~~~~~v~d~m~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~ 433 (500)
-+..++|.+ ....-.+...-..++..+.....+.+.+++..++.+|+++..++... +
T Consensus 274 ---ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------~ 332 (386)
T COG4175 274 ---LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------A 332 (386)
T ss_pred ---eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------c
Confidence 033455653 22222333344567888888888788888878889999999888663 0
Q ss_pred HhcCCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010821 434 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 500 (500)
Q Consensus 434 l~~~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~l~~ 500 (500)
+ ..++.++..++++.+.+..+.+.... ++|||+ +++++|+|+...++.+|.+
T Consensus 333 ~-------------~~~~~~v~~d~~~~~~~~~~~~~~~p-~aVvde-~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 L-------------IDDVLTVDADTPLSEILARIRQAPCP-VAVVDE-DGRYVGIISRGELLEALAR 384 (386)
T ss_pred c-------------cccccccCccchHHHHHHHHhcCCCc-eeEEcC-CCcEEEEecHHHHHHHHhc
Confidence 1 23566788999999999999888764 889995 8999999999999998864
No 230
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.57 E-value=0.013 Score=48.29 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=41.6
Q ss_pred eeeEEEEec-C---CCceEEEEEccC---CCCCCC--CCC-c-ccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 25 LIPMRFVWP-Y---GGRSVFLSGSFN---RWSELL--PMS-P-VEGCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 25 ~~~~~f~~~-~---~~~~V~l~Gsf~---~W~~~~--~m~-~-~~~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
.|+++|.-. . .|++|+|+|+-. +|++.. .|. . .......|++.+.||.| .++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 377888853 2 379999999866 898653 232 1 11245689999999998 69999998
No 231
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.54 E-value=0.011 Score=48.67 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=36.9
Q ss_pred CCceEEEEEc---cCCCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 35 GGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 35 ~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
.|+.++|+|+ ..+|++. .+|... ....|++.+.||+| .++|||++
T Consensus 12 ~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 12 FGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred CCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence 3789999999 5589964 477663 35689999999987 69999998
No 232
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.52 E-value=0.02 Score=46.89 Aligned_cols=54 Identities=20% Similarity=0.389 Sum_probs=40.7
Q ss_pred eeEEEE----ecCCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 26 IPMRFV----WPYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 26 ~~~~f~----~~~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
|+++|. ....++.|+|+|+-. +|++. ++|... ....|++.+.||.| ..+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 355565 223478999999877 89964 466553 45789999999998 79999987
No 233
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.50 E-value=0.012 Score=48.03 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=40.7
Q ss_pred eeEEEEec--CCCceEEEEEccC---CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 26 IPMRFVWP--YGGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 26 ~~~~f~~~--~~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
+.+++.++ .+++.++|+|+=. +|+...+|... ..+.|++.+.||++ .++|||++
T Consensus 3 v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 3 VTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred EEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence 33444445 3457789999765 79987788763 45789999999998 59999998
No 234
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.40 E-value=0.007 Score=67.82 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=45.7
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEE--CCE--EeeCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV--DGE--WRHDEHQ 91 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V--Dg~--w~~d~~~ 91 (500)
=++|+ |.++|++|+|+|+||+ ....||.+. ...|.|++.+++..|.. |||.| ||+ ...||-+
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~-~~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERL-HPRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEc-CCCceEEEEecCCCCCC-eEEEEEeCCceeEeccccc
Confidence 46776 9999999999999997 334588875 35699999999666632 66665 785 4555544
No 235
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=96.34 E-value=0.01 Score=64.08 Aligned_cols=62 Identities=24% Similarity=0.312 Sum_probs=49.6
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECC-EEeeCCCCCeeeC
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFISS 96 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg-~w~~d~~~~~~~~ 96 (500)
++|+ |...|++|.|.+. + ...+|.+. .+|+|+++++ +.+| +.|+|.||| ..+.||.+.....
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~~ 65 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQPD 65 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCcccccccc
Confidence 4675 9999999999973 3 34689874 4799999997 7778 789999999 7889998876543
No 236
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.29 E-value=0.018 Score=63.24 Aligned_cols=66 Identities=27% Similarity=0.514 Sum_probs=49.2
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC-CCCCcccCCCCeEEEEEE-cCCceEEEEEEEC---CE--EeeCCCCCee
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQPFI 94 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD---g~--w~~d~~~~~~ 94 (500)
-++|+ |.+.|++|.|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|+|.|+ |. ++.||-....
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~~~ 102 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAFYA 102 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEeee
Confidence 46777 99999999999999999865 478764 23699999986 45565 5888883 54 4677766543
No 237
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.19 E-value=0.024 Score=46.03 Aligned_cols=47 Identities=23% Similarity=0.493 Sum_probs=37.8
Q ss_pred CCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCC--c-eEEEEEEE
Q 010821 34 YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV 81 (500)
Q Consensus 34 ~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~--g-~~~ykf~V 81 (500)
..|+.++|+|+.. +|++. ++|...+ ..+.|++.+.+|+ | .++|||++
T Consensus 11 ~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 11 QFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred CCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 4489999999987 79853 5776642 2578999999999 6 79999998
No 238
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.79 E-value=0.031 Score=44.76 Aligned_cols=61 Identities=23% Similarity=0.503 Sum_probs=37.1
Q ss_pred eEEEEecC------CCceEEEEEccCCCCCC--CCCCccc--CCCCeEEEEEEcCCceEEEEEEE-CC--EEee
Q 010821 27 PMRFVWPY------GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWRH 87 (500)
Q Consensus 27 ~~~f~~~~------~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~~~~~~~L~~g~~~ykf~V-Dg--~w~~ 87 (500)
++++.|.. ++.+|++.+.|++|+.. .+|.++. ...+.|++++.+|..-|+..|+- || .|-.
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wDN 76 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWDN 76 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EES
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEeC
Confidence 45555533 36889999999999875 3566542 12689999999999988888887 65 5633
No 239
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.059 Score=58.27 Aligned_cols=62 Identities=18% Similarity=0.204 Sum_probs=52.8
Q ss_pred ccCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcC--CCcEEEEEeHHHHHHHHHc
Q 010821 356 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKD 417 (500)
Q Consensus 356 ~~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~--~g~lvGiis~~Di~~~~~~ 417 (500)
.+.-+|+++|.+++.++..+.|..|..+.+....++.+|+|++ ..-++|.|.++.+..++..
T Consensus 585 ~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 585 VHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred eeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 3444789999999999999999999999887776999999986 3479999999999887644
No 240
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=95.29 E-value=0.12 Score=42.54 Aligned_cols=55 Identities=27% Similarity=0.538 Sum_probs=38.8
Q ss_pred eEEEEecCC-CceEEEEEccC---CCCCC--CCCCccc-CCCCeEEEEEEcCCc-eEEEEEEE
Q 010821 27 PMRFVWPYG-GRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV 81 (500)
Q Consensus 27 ~~~f~~~~~-~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V 81 (500)
.+.+.++-. |++++|+|+-. +|++. .+|.... .....|++.+.+|++ .++|||+|
T Consensus 3 ~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 3 SFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred EEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 344444443 79999999765 79764 4675421 223489999999987 69999999
No 241
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=95.08 E-value=0.056 Score=59.40 Aligned_cols=64 Identities=19% Similarity=0.333 Sum_probs=46.4
Q ss_pred EEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEE-cCCc-eEEEEEEECCE--EeeCCCCCee
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVDGE--WRHDEHQPFI 94 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~-L~~g-~~~ykf~VDg~--w~~d~~~~~~ 94 (500)
++|+ |...|++|.|++ |++|.. .++|.+ ...|+|++.++ +.+| .|.|++..+|. ++.||-+...
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~--~~~gvw~~~i~~~~~g~~Y~y~v~~~~~~~~~~DPya~~~ 94 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKR--GENGVWSAVLEGDLHGYFYTYQVCINGKWRETVDPYAKAV 94 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEeccc--CCCCEEEEEECCCCCCCEEEEEEEcCCCeEEEcCCCccee
Confidence 6786 999999999998 888853 347876 35799999987 4556 44444444564 5888887643
No 242
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=94.90 E-value=0.35 Score=40.56 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=38.4
Q ss_pred EecCCCceEEEEEcc---CCCCCC--CCCCccc-----CCCCeEEEEEEcCCc----eEEEEEEE
Q 010821 31 VWPYGGRSVFLSGSF---NRWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV 81 (500)
Q Consensus 31 ~~~~~~~~V~l~Gsf---~~W~~~--~~m~~~~-----~~~~~~~~~~~L~~g----~~~ykf~V 81 (500)
+..+.+++++|+|+= -+|+.. ++|.... .....|++.+.||+| .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 456678999999974 489865 4666531 134579999999996 69999997
No 243
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=94.33 E-value=0.32 Score=41.55 Aligned_cols=84 Identities=18% Similarity=0.271 Sum_probs=55.2
Q ss_pred eeEEEEec----CCCceEEEEEccCCCCCC-----CCCCcccCCCCeEEEEEEcCCc-eEEEEEEECCE-----------
Q 010821 26 IPMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----------- 84 (500)
Q Consensus 26 ~~~~f~~~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VDg~----------- 84 (500)
.-+||.|. +....+.|.|+.|++... ..|.+.+ ..++|..++.||.+ +-.|+|+.+-.
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~-gTDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLP-GTDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-T-TSSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCC-CCceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 35899999 445779999999999532 3677774 45899999999998 78999996432
Q ss_pred -----EeeCCCCCee-eCC---CCCeeeEEEeccC
Q 010821 85 -----WRHDEHQPFI-SSE---YGIVNTVLLATEP 110 (500)
Q Consensus 85 -----w~~d~~~~~~-~~~---~g~~nn~l~v~~~ 110 (500)
-+.||-||.. ... .|..-+++...+.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 3789999853 333 4788888887654
No 244
>PLN02960 alpha-amylase
Probab=94.25 E-value=0.044 Score=61.19 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=41.4
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCCC-CCCc--c-cCCCCeEEEEEE--cCCce-------EEEEEEEC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSELL-PMSP--V-EGCPTVFQIIWS--IPPGY-------HQYKFCVD 82 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~~-~m~~--~-~~~~~~~~~~~~--L~~g~-------~~ykf~VD 82 (500)
-++|. |..||+.++|+|+||||+++. .|.+ . ...-|+|.++++ |..|. -+|.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 45555 999999999999999999874 4431 0 123589999986 87772 36788775
No 245
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=93.88 E-value=0.4 Score=46.05 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=71.6
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHccccc--------c-cCcccccHHHHHhcCC
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA--------H-INLSEMTIHQALQLGQ 438 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~--------~-~~~~~~~v~~~l~~~~ 438 (500)
.++.|+-+ +.||+++- +++.|.+ +|+++-+=+..+++.-.++.... . ..+...++.+.+....
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~ 259 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE 259 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence 46666655 78998764 4588887 79999999988887533221100 0 0112234444432211
Q ss_pred CCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 439 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 439 ~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
. ..--.........+++..+...+...+||||+ +|+++|.||..+|+..
T Consensus 260 ~---------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 P---------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred c---------ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 0 00111233445556888888999999999995 8999999999999875
No 246
>PLN02316 synthase/transferase
Probab=93.73 E-value=0.27 Score=56.57 Aligned_cols=57 Identities=14% Similarity=0.332 Sum_probs=44.8
Q ss_pred eEEEEecCC------CceEEEEEccCCCCCCC----CCCcccC-CCCeEEEEEEcCCceEEEEEEE-CC
Q 010821 27 PMRFVWPYG------GRSVFLSGSFNRWSELL----PMSPVEG-CPTVFQIIWSIPPGYHQYKFCV-DG 83 (500)
Q Consensus 27 ~~~f~~~~~------~~~V~l~Gsf~~W~~~~----~m~~~~~-~~~~~~~~~~L~~g~~~ykf~V-Dg 83 (500)
++++.|+.. +.+|++.|.||+|.... .|.+.+. .++.|.+++.+|+.-|..-|+. ||
T Consensus 330 ~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg 398 (1036)
T PLN02316 330 TVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADG 398 (1036)
T ss_pred EEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecC
Confidence 788888843 58899999999999642 3334332 4568999999999999999997 77
No 247
>PLN02950 4-alpha-glucanotransferase
Probab=92.50 E-value=0.91 Score=52.00 Aligned_cols=67 Identities=27% Similarity=0.516 Sum_probs=46.4
Q ss_pred ceeeEEEE--ecC-CCceEEEEEccC---CCCCC--CCCCccc-CCCCeEEEEEEcCCc-eEEEEEEE---CCE---Eee
Q 010821 24 VLIPMRFV--WPY-GGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPG-YHQYKFCV---DGE---WRH 87 (500)
Q Consensus 24 ~~~~~~f~--~~~-~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~~~~~~~L~~g-~~~ykf~V---Dg~---w~~ 87 (500)
..+.++|. +.. -|++|+|+|+-. +|+.. .+|.... .....|++++.||+| ..+|||++ +|. |-.
T Consensus 7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE~ 86 (909)
T PLN02950 7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWEA 86 (909)
T ss_pred CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeeec
Confidence 34566666 333 489999999886 69864 5775431 123489999999997 69999995 443 765
Q ss_pred CCC
Q 010821 88 DEH 90 (500)
Q Consensus 88 d~~ 90 (500)
.++
T Consensus 87 g~N 89 (909)
T PLN02950 87 GKK 89 (909)
T ss_pred CCC
Confidence 553
No 248
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=92.38 E-value=0.34 Score=53.95 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=41.0
Q ss_pred EEEE-ecCCCceEEEEEccCCCCC----CCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w 85 (500)
++|. |...|++|.|+ -|++|.. ..+|.+ +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 5676 99999999996 5665542 347876 35799999996 67776 4999999854
No 249
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.28 E-value=0.31 Score=48.17 Aligned_cols=92 Identities=13% Similarity=0.222 Sum_probs=69.3
Q ss_pred CCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccccCcccCCC
Q 010821 285 NDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEP 364 (500)
Q Consensus 285 ~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~ 364 (500)
...-..++..+.....+.+.++ + ..+ +.+|+++..++.+. .
T Consensus 292 ~~~~~~al~~~~~~~~~~~~~~--~-~~~---~~~g~v~~~~~~~~---------------------------------~ 332 (386)
T COG4175 292 GDGPRVALKLLRDEGREYGYAV--D-RGN---KFVGVVSIDSLVKA---------------------------------A 332 (386)
T ss_pred ccccchhhhhhhhccchhhHHH--h-ccC---ceeeEEeccchhcc---------------------------------c
Confidence 3444567777877777777777 2 344 68999998887642 0
Q ss_pred CCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821 365 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 416 (500)
Q Consensus 365 m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~ 416 (500)
+...+.++..++++.+.+..+.+... .++|+|++++++|++++..++.++.
T Consensus 333 ~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 333 LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALA 383 (386)
T ss_pred ccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHh
Confidence 23356788899999999988876654 6889999999999999999998654
No 250
>PLN02316 synthase/transferase
Probab=92.03 E-value=0.42 Score=55.02 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=50.8
Q ss_pred eEEEEecCC------CceEEEEEccCCCCCC---CCCCcccCCCCeEEEEEEcCCceEEEEEEE-CCE--EeeCCCCC
Q 010821 27 PMRFVWPYG------GRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQP 92 (500)
Q Consensus 27 ~~~f~~~~~------~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V-Dg~--w~~d~~~~ 92 (500)
++++.|+.. ..+|.|.|.||+|.-. .+|.|.+..++.|++++.+|++-|..-|+. ||. |-++..+.
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~D 232 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHKD 232 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCCc
Confidence 566666654 4779999999999864 367776656788999999999999999998 773 55555443
No 251
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=91.86 E-value=0.4 Score=55.74 Aligned_cols=65 Identities=11% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEEE-ecCCCceEEEEE-ccCCCCC---CCCCCcccCCCCeEEEEEE-cCCc-----eEEEEEEECC----EEeeCCCCC
Q 010821 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP 92 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~~~~~~~-L~~g-----~~~ykf~VDg----~w~~d~~~~ 92 (500)
++|+ |...|++|.|++ ++++|.. .++|.+ ...|+|++.++ +.+| -+.|+|.|++ ....||-+.
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~--~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKK--GDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEeccc--CCCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 5676 999999999998 5566754 468887 35799999987 4443 3688888866 467787665
Q ss_pred ee
Q 010821 93 FI 94 (500)
Q Consensus 93 ~~ 94 (500)
.+
T Consensus 407 al 408 (1111)
T TIGR02102 407 SL 408 (1111)
T ss_pred EE
Confidence 43
No 252
>PRK03705 glycogen debranching enzyme; Provisional
Probab=91.35 E-value=0.38 Score=53.19 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=41.1
Q ss_pred EEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w 85 (500)
+.|+ |...|++|.|+. |++|. ...+|.+ +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPA--RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeee--ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 6776 999999999997 77653 2357865 35799999987 56665 5999999854
No 253
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=90.64 E-value=1.2 Score=46.50 Aligned_cols=88 Identities=18% Similarity=0.283 Sum_probs=58.3
Q ss_pred CCceeeEEEEecCCC--------ceEEEE--EccC--CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEEC---C--
Q 010821 22 DTVLIPMRFVWPYGG--------RSVFLS--GSFN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD---G-- 83 (500)
Q Consensus 22 ~~~~~~~~f~~~~~~--------~~V~l~--Gsf~--~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VD---g-- 83 (500)
.....-+||.|.+.. ++|+|- |..+ .+....+|.+.. ..++|..++.||.. +-.|+|+++ +
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~-~tDvW~~~~~~p~~~r~sY~~~~~~~~~~~ 113 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIA-GTDVWQWSTELSANWRGSYCFIPTERDDIF 113 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccC-CCceEEEEEEECcccEEEEEEEeccccccc
Confidence 345689999999742 358873 2222 233334788875 45899999999998 899999982 1
Q ss_pred ----------E------E-------eeCCCCCee-eCCCCCeeeEEEeccC
Q 010821 84 ----------E------W-------RHDEHQPFI-SSEYGIVNTVLLATEP 110 (500)
Q Consensus 84 ----------~------w-------~~d~~~~~~-~~~~g~~nn~l~v~~~ 110 (500)
. | +.||.||.. .++.|+..|++.+.+.
T Consensus 114 ~~~~~~~~~~~~~~r~~~~~l~~~~~~DP~N~~~~~~~~~~~~S~l~lp~a 164 (411)
T PRK10439 114 SAFAPAPSPDRLELREGWRKLLPQAIADPLNPQSWRGGRGHAVSALEMPQA 164 (411)
T ss_pred cccccccchhHHHHHHHHHHhhccccCCCCCCCCCCCCCccccccccCCCC
Confidence 0 2 377888753 3444554577777654
No 254
>PLN02950 4-alpha-glucanotransferase
Probab=90.58 E-value=1.8 Score=49.69 Aligned_cols=89 Identities=20% Similarity=0.377 Sum_probs=57.8
Q ss_pred CCceeeEEEE--ec--CCCceEEEEEccC---CCCCC--CCCCcccCCCCeEEEEEEcCCc--eEEEEEEE---CC--EE
Q 010821 22 DTVLIPMRFV--WP--YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV---DG--EW 85 (500)
Q Consensus 22 ~~~~~~~~f~--~~--~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~~~~~~~L~~g--~~~ykf~V---Dg--~w 85 (500)
.+..++++|. .+ ..|++|+|+|+=. +|++. .+|.. .....|++.+.+|++ ..+|||++ +| .|
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~--~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY--TGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc--CCCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 3445777777 43 3589999999765 89865 35654 346789999999988 59999998 44 38
Q ss_pred eeCCCCCeeeCCC-CCeeeEEEeccCCC
Q 010821 86 RHDEHQPFISSEY-GIVNTVLLATEPNF 112 (500)
Q Consensus 86 ~~d~~~~~~~~~~-g~~nn~l~v~~~~~ 112 (500)
-..++.-...... ++..-++...+..+
T Consensus 227 E~g~NR~~~~p~~~~~~~~~~~~~~~~~ 254 (909)
T PLN02950 227 ELGVNRELSLDSSSGKPPSYIVASDGAF 254 (909)
T ss_pred eeCCCceeecCcccCCceEEEecccccc
Confidence 7666654333322 33333333444433
No 255
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=89.55 E-value=1.6 Score=49.90 Aligned_cols=66 Identities=20% Similarity=0.184 Sum_probs=45.8
Q ss_pred eEEEE-ecCCCceEEEEEccCCCC--CCCCCCcccCCCCeEEEEEE-cCCceEEEEEEEC------CE----EeeCCCCC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP 92 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VD------g~----w~~d~~~~ 92 (500)
-++|+ |...|++|.|++.+++|. ...+|.+. ...|+|++.++ ...|. .|+|.|+ |+ +..||-..
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 35676 999999999997766664 23578763 24699999986 44554 3666664 54 37888776
Q ss_pred ee
Q 010821 93 FI 94 (500)
Q Consensus 93 ~~ 94 (500)
..
T Consensus 214 al 215 (898)
T TIGR02103 214 SL 215 (898)
T ss_pred eE
Confidence 44
No 256
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=88.58 E-value=0.94 Score=46.75 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=40.0
Q ss_pred CceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHH
Q 010821 368 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 416 (500)
Q Consensus 368 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~ 416 (500)
...++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 46688999999999999887765 4888885 99999999999987653
No 257
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=85.48 E-value=2.7 Score=40.56 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=33.9
Q ss_pred CCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHH
Q 010821 374 PSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 413 (500)
Q Consensus 374 ~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~ 413 (500)
......+++..+...+.+.+||+|++|+++|.+|..+++.
T Consensus 268 ~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 268 EGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 3344556888888899999999999999999999999875
No 258
>PLN03244 alpha-amylase; Provisional
Probab=83.04 E-value=1.4 Score=48.86 Aligned_cols=67 Identities=24% Similarity=0.381 Sum_probs=44.5
Q ss_pred CCCCCCCCceeeEEEE-ecCCCceEEEEEccCCCCCCCCCCcc----cCCCCeEEEEEE--cCCce-------EEEEEEE
Q 010821 16 EPASVPDTVLIPMRFV-WPYGGRSVFLSGSFNRWSELLPMSPV----EGCPTVFQIIWS--IPPGY-------HQYKFCV 81 (500)
Q Consensus 16 ~~~~~~~~~~~~~~f~-~~~~~~~V~l~Gsf~~W~~~~~m~~~----~~~~~~~~~~~~--L~~g~-------~~ykf~V 81 (500)
+-.|+.....--+.|. |..||+--+|+|+||||+++....|. ...-|+|.+.++ |..|. -+|.|.-
T Consensus 121 e~~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (872)
T PLN03244 121 EILGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVD 200 (872)
T ss_pred hhhccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhcccc
Confidence 3444444433345555 99999999999999999987433221 023589999986 77772 3666664
Q ss_pred C
Q 010821 82 D 82 (500)
Q Consensus 82 D 82 (500)
|
T Consensus 201 ~ 201 (872)
T PLN03244 201 D 201 (872)
T ss_pred c
Confidence 4
No 259
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=82.94 E-value=4.1 Score=48.47 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=42.6
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCCC----CCCCcccCCCCeEEEEEE-cCCceEEEEEEECCEE
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~~~~~~~-L~~g~~~ykf~VDg~w 85 (500)
-++|. |...|++|.|+ -|+.|... ++|.. +.+++|.+.+. +.+|. .|+|.|+|.|
T Consensus 24 gv~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 24 GVNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred eEEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 36776 99999999998 89988643 45543 45799999876 77886 6999999854
No 260
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=82.85 E-value=6.8 Score=32.53 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=39.0
Q ss_pred ceeeEEEEe-cCCCceEEEEEccCC--CCC-CCCCCcccCCC--CeEEEEEEcCCceEEEEEEE
Q 010821 24 VLIPMRFVW-PYGGRSVFLSGSFNR--WSE-LLPMSPVEGCP--TVFQIIWSIPPGYHQYKFCV 81 (500)
Q Consensus 24 ~~~~~~f~~-~~~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~~~~~~~L~~g~~~ykf~V 81 (500)
..+.++++= ....++|.|.-.-+. |.. ..+|.+....+ ..|+++++++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 456666663 334688888655443 232 46887753222 35999999888999999999
No 261
>PLN02877 alpha-amylase/limit dextrinase
Probab=78.96 E-value=4.9 Score=46.13 Aligned_cols=51 Identities=14% Similarity=0.224 Sum_probs=35.3
Q ss_pred eEEEE-ecCCCceEEEEEccCCCCC-----CCCCCcccCCCCeEEEEEEc-CCceEEEEEEEC
Q 010821 27 PMRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVD 82 (500)
Q Consensus 27 ~~~f~-~~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~~~~~~~L-~~g~~~ykf~VD 82 (500)
-++|. |...|++|.|+- |++|.. ..+|. ...|+|++.++- ..| +.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 46676 999999999995 665532 23564 357999999873 345 44777775
No 262
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=77.95 E-value=2 Score=46.96 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=31.8
Q ss_pred EEEE-ecCCCceEEEEEccCCCCCCC-CCCcccCCCCeEEEEEE
Q 010821 28 MRFV-WPYGGRSVFLSGSFNRWSELL-PMSPVEGCPTVFQIIWS 69 (500)
Q Consensus 28 ~~f~-~~~~~~~V~l~Gsf~~W~~~~-~m~~~~~~~~~~~~~~~ 69 (500)
+.|. |..+++.|.++|+||+|.... .+... ...|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~k-~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKPK-DDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCcc-cccceeEEecC
Confidence 6666 999999999999999999863 34321 34688988876
No 263
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=72.25 E-value=4.7 Score=44.28 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=48.6
Q ss_pred cccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCC-CCeEEEEEehHHHHHHhh
Q 010821 445 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG-SKRVEGIVSLSDIFKFLL 499 (500)
Q Consensus 445 ~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~-~g~liGiIS~~DIl~~l~ 499 (500)
.+|.+++.++..++|..|..+.+....++.+|+||+. +.-++|.|+++.+...|.
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 4899999999999999999999988889999999954 357999999999987763
No 264
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=68.55 E-value=19 Score=28.34 Aligned_cols=61 Identities=21% Similarity=0.242 Sum_probs=40.9
Q ss_pred CceeeEEEEecCCC---ceEEEEEcc-CCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEE-C-CEEeeC
Q 010821 23 TVLIPMRFVWPYGG---RSVFLSGSF-NRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-D-GEWRHD 88 (500)
Q Consensus 23 ~~~~~~~f~~~~~~---~~V~l~Gsf-~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~V-D-g~w~~d 88 (500)
+.-.-+.+.+.+|+ .+|.|.++= .+|. +|.+. -+..|++.-.++.|-+.||+.. | |+|...
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~--wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRS--WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEE--CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecC--cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 44566777788775 679999544 4585 47774 3679999887777899999988 7 887764
No 265
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=67.11 E-value=18 Score=31.07 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=34.3
Q ss_pred eEEEEecCC-CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEE
Q 010821 27 PMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (500)
Q Consensus 27 ~~~f~~~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (500)
.++|+|.+. +.+|...++..-|... .+.- +-+..|+.+++- ||.|.|+
T Consensus 63 TVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~--~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 63 TVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA--GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred EEEEEECCCCCceEEEeCCCCccccc-cccc--CCCcceEEEecc-cceEEEE
Confidence 789999999 8999999988554442 1211 224567777774 9999886
No 266
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=62.88 E-value=14 Score=31.11 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=44.3
Q ss_pred CCceeeEEEEe-cCCCceEEEE-EccCCC----CC-CCCCCccc--CCCCeEEEEEEcCCceEEEEEEE--CC-EEeeCC
Q 010821 22 DTVLIPMRFVW-PYGGRSVFLS-GSFNRW----SE-LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV--DG-EWRHDE 89 (500)
Q Consensus 22 ~~~~~~~~f~~-~~~~~~V~l~-Gsf~~W----~~-~~~m~~~~--~~~~~~~~~~~L~~g~~~ykf~V--Dg-~w~~d~ 89 (500)
....+.++|+= .+..++|.|. |+-.+| .. ..+|.+.. +.-..|+++++++..+..|.|.| +| .|..+.
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 34567777774 4557899985 677766 21 24677642 22357899999999999999998 34 354444
Q ss_pred C
Q 010821 90 H 90 (500)
Q Consensus 90 ~ 90 (500)
.
T Consensus 99 ~ 99 (120)
T PF02903_consen 99 R 99 (120)
T ss_dssp T
T ss_pred C
Confidence 3
No 267
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.39 E-value=9.7 Score=41.30 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=40.8
Q ss_pred CCCCCCCCCcccCCCCeEEEEEEcCCc-eEEEEEEECCE----EeeCCCCCeeeCCCCCeeeEEEeccCCCC
Q 010821 47 RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE----WRHDEHQPFISSEYGIVNTVLLATEPNFM 113 (500)
Q Consensus 47 ~W~~~~~m~~~~~~~~~~~~~~~L~~g-~~~ykf~VDg~----w~~d~~~~~~~~~~g~~nn~l~v~~~~~~ 113 (500)
.|.. +.+.|..-.+|.|-+.|+++|| .|.|+|.||++ |-+......-.++ +---|.|......
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G---~~G~liI~~~~~~ 151 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATG---VFGALIINPRPGL 151 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccC---ceeEEEEcCCccC
Confidence 3654 4444543346688899999999 79999999853 7777666654442 3344566555443
No 268
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=59.35 E-value=18 Score=38.71 Aligned_cols=113 Identities=13% Similarity=0.190 Sum_probs=72.4
Q ss_pred CCCCCC--CceEecCCCCHH-HHHHHHHHCCCCEEEEEcCCC--cEEEEEeHHHHHHHHHcccccccCcccccHHHHHhc
Q 010821 362 GEPNRR--PLAMLRPSASLS-AALNLLVQAQVSSIPIVDDND--SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 436 (500)
Q Consensus 362 ~d~m~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVvd~~g--~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~ 436 (500)
+++|.+ .+..+..+..+. +......+++++++||.+.+. .+.|.+....+ .+..... .+...++...
T Consensus 207 ~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~-~~~~~~~----~~~~~~v~~~--- 278 (498)
T KOG2118|consen 207 GEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLL-RLLQVEV----PLEPLPVSES--- 278 (498)
T ss_pred HHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhh-hhhcccc----ccccccchhh---
Confidence 344542 355666666665 555556789999999997532 22222222222 2221111 1223444443
Q ss_pred CCCCCCcccccCCCceEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHH
Q 010821 437 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 494 (500)
Q Consensus 437 ~~~~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DI 494 (500)
+..+..-++.++++.+.++.+.+.+.|.+.|.+ ...-++++++.|+
T Consensus 279 ----------~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 279 ----------ALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred ----------hccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 345777889999999999999999999888887 3567899999887
No 269
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=56.70 E-value=48 Score=36.76 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHc-ccccccCcccc-----cHHHHHhcCCCCCCcccccCCCc
Q 010821 378 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD-KAYAHINLSEM-----TIHQALQLGQDSYSPYELRSQRC 451 (500)
Q Consensus 378 l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~-~~~~~~~~~~~-----~v~~~l~~~~~~~~~~~im~~~~ 451 (500)
+..+.+.+...+ ..+.++|.+|.++.+....++...... +......|.+. -++-++. ...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCc
Confidence 445555555555 688899999999999998888765443 22112223332 1222221 2344
Q ss_pred eEeCCCCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEeh
Q 010821 452 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSL 491 (500)
Q Consensus 452 ~~v~~~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~ 491 (500)
+.|....-.. +.+....+...||.|+ +|+++|+|++
T Consensus 128 v~v~g~EH~~---~~~~~~~c~aaPI~d~-~G~liGvl~l 163 (638)
T PRK11388 128 VKTMGDQHFK---QALHNWAFCATPVFDS-KGRLTGTIAL 163 (638)
T ss_pred eEEecHHHHH---HhccCceEEeeEEEcC-CCCEEEEEEE
Confidence 4455444333 3344556678999996 7999999974
No 270
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=51.77 E-value=2.6e+02 Score=28.38 Aligned_cols=144 Identities=11% Similarity=0.147 Sum_probs=87.5
Q ss_pred CceecCCCCcHHHHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCcccccccccccccccc
Q 010821 278 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 357 (500)
Q Consensus 278 ~~v~v~~~~sl~~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~~ 357 (500)
..+.|.+.+++.+....+.+++ ++.-.++++++.+.... .+.+..|+|
T Consensus 46 ~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~Y 93 (342)
T COG1559 46 KTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGEY 93 (342)
T ss_pred eEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCcee
Confidence 6889999999999999998764 33345677776654332 122444444
Q ss_pred CcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHHHcccccccCcccccHHHHHhcC
Q 010821 358 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 437 (500)
Q Consensus 358 ~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di~~~~~~~~~~~~~~~~~~v~~~l~~~ 437 (500)
.+.+.++..+++++|.+-+.....++=.+| .+.+++...+................+++...
T Consensus 94 -------------~l~~~ms~~~il~~L~~Gk~~~~~~~ipEG-----~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~ 155 (342)
T COG1559 94 -------------RLRPGMSAADILKLLESGKSAQFKVTIPEG-----YTLKQIAKKLAEAPVLDGVLDGLAIAEIAARL 155 (342)
T ss_pred -------------ecCCCCCHHHHHHHHhcCccccceEecCCC-----ccHHHHHHHHhcchhhhhhhhhhhhHHHHHhc
Confidence 478889999999999866554444432233 56778777554433222222223334433221
Q ss_pred CC--CCCcccccCCCceEeCCCCCHHHHHHHHhcCC
Q 010821 438 QD--SYSPYELRSQRCQMCLPSDTLHKVMERLANPG 471 (500)
Q Consensus 438 ~~--~~~~~~im~~~~~~v~~~~tL~~a~~~m~~~~ 471 (500)
.. .....|+.-..-..++++++..++++.|.+.-
T Consensus 156 p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 156 PKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred CCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 10 11223344456667789999999999987653
No 271
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=50.75 E-value=47 Score=27.77 Aligned_cols=53 Identities=19% Similarity=0.448 Sum_probs=33.8
Q ss_pred CceEEEEEccCCCCCCCCCCc--cc--------CCCCeEEEEEEcCCc--------eEEEEEEECCE--EeeC
Q 010821 36 GRSVFLSGSFNRWSELLPMSP--VE--------GCPTVFQIIWSIPPG--------YHQYKFCVDGE--WRHD 88 (500)
Q Consensus 36 ~~~V~l~Gsf~~W~~~~~m~~--~~--------~~~~~~~~~~~L~~g--------~~~ykf~VDg~--w~~d 88 (500)
.++|.|.=+||+|.....+.. .. ..-..|...++||+. ++--+|.+.|+ |-.+
T Consensus 33 eK~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~eyWDNN 105 (113)
T PF03370_consen 33 EKEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQEYWDNN 105 (113)
T ss_dssp SEEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTEEEEEST
T ss_pred CeEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCCEEecCC
Confidence 388999999999986532221 10 122478888888754 46667888885 5443
No 272
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=47.94 E-value=37 Score=26.29 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=22.8
Q ss_pred CCEEEEEcCCCcEEEEEeHHHHHHHHHcc
Q 010821 390 VSSIPIVDDNDSLLDIYCRSDITALAKDK 418 (500)
Q Consensus 390 ~~~lpVvd~~g~lvGiis~~Di~~~~~~~ 418 (500)
...+-|+|++|+.+|+++.++.+.++...
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45688899999999999999999987665
No 273
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=47.47 E-value=89 Score=26.36 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=25.3
Q ss_pred eEEEEecCCCceEEEE-EccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEE
Q 010821 27 PMRFVWPYGGRSVFLS-GSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (500)
Q Consensus 27 ~~~f~~~~~~~~V~l~-Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (500)
.|+|+|..++.+|... |..- +... .... +.+..|+.++. .+|.|.|.
T Consensus 24 TV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 24 TVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred EEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 7899999888776652 2111 1111 1111 12345666666 56777765
No 274
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=46.49 E-value=24 Score=33.10 Aligned_cols=15 Identities=7% Similarity=0.261 Sum_probs=10.5
Q ss_pred EE-CCE--EeeCCCCCee
Q 010821 80 CV-DGE--WRHDEHQPFI 94 (500)
Q Consensus 80 ~V-Dg~--w~~d~~~~~~ 94 (500)
+| ||+ |.+||....+
T Consensus 67 iVsDGk~lW~YDpdleQV 84 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKTV 84 (210)
T ss_pred EEECCCEEEEECCChhhE
Confidence 55 884 8888877643
No 275
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=42.76 E-value=55 Score=33.57 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=28.7
Q ss_pred EEEEccCCCCCCCCCCcccCCCCeEEEEEE--cCCceEEEEEEECCE
Q 010821 40 FLSGSFNRWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (500)
Q Consensus 40 ~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~--L~~g~~~ykf~VDg~ 84 (500)
.+.|+|.+ ....+... ..+|+|+..++ .+||+|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 35677752 22223222 35799998865 688999999999984
No 276
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=39.17 E-value=62 Score=29.85 Aligned_cols=40 Identities=33% Similarity=0.799 Sum_probs=21.7
Q ss_pred CCCCCCCCCCcccCCCCeEEEEEEcC-CceEEEEEE--ECC--EEeeC
Q 010821 46 NRWSELLPMSPVEGCPTVFQIIWSIP-PGYHQYKFC--VDG--EWRHD 88 (500)
Q Consensus 46 ~~W~~~~~m~~~~~~~~~~~~~~~L~-~g~~~ykf~--VDg--~w~~d 88 (500)
..|+. .||... .+..|+..+.+. +|.|+|+.. +|- .|+++
T Consensus 55 ~~w~~-vpM~~~--gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL--GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES--TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC--CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 35877 699885 578999998864 499998876 352 35544
No 277
>PRK10301 hypothetical protein; Provisional
Probab=38.39 E-value=1.7e+02 Score=24.90 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=34.1
Q ss_pred CCceeeEEEEecCC--CceEEEEEccC-CCCCCCCCCcccCCCCeEEEEE--EcCCceEEEEEEE---CCE
Q 010821 22 DTVLIPMRFVWPYG--GRSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIW--SIPPGYHQYKFCV---DGE 84 (500)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~l~Gsf~-~W~~~~~m~~~~~~~~~~~~~~--~L~~g~~~ykf~V---Dg~ 84 (500)
.+..|..+|.=+=. ...|.|.+.=- .|... +-.........+++.+ .|++|.|.-.|.| ||+
T Consensus 44 ~P~~V~L~F~e~v~~~~s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 44 APQALTLNFSEGIEPGFSGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred CCCEEEEEcCCCccccccEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 45556666642222 35677775422 23322 1111112345677776 3889999999987 774
No 278
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=36.49 E-value=36 Score=27.73 Aligned_cols=17 Identities=12% Similarity=0.409 Sum_probs=9.9
Q ss_pred CCeEEEEE-EcCCceEEE
Q 010821 61 PTVFQIIW-SIPPGYHQY 77 (500)
Q Consensus 61 ~~~~~~~~-~L~~g~~~y 77 (500)
+..+++++ .+.||+|+|
T Consensus 73 g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 73 GETATVTFTPLKPGEYEF 90 (104)
T ss_dssp T-EEEEEEEE-S-EEEEE
T ss_pred CCEEEEEEcCCCCEEEEE
Confidence 34566665 789999876
No 279
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=36.48 E-value=66 Score=25.65 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=24.3
Q ss_pred CCeEEEEEEcCCceEEEEEEECCEEeeCCCCCe
Q 010821 61 PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF 93 (500)
Q Consensus 61 ~~~~~~~~~L~~g~~~ykf~VDg~w~~d~~~~~ 93 (500)
+|.=++.++|+||+|...-+. |.+.+-|..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 466678899999999999887 44666666653
No 280
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=36.13 E-value=1.4e+02 Score=33.19 Aligned_cols=99 Identities=12% Similarity=0.059 Sum_probs=56.2
Q ss_pred HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHh-hcccCCCCccccccccccccccccCcccCCCCCCC
Q 010821 290 DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRP 368 (500)
Q Consensus 290 ~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~-~~~~~~~~~~~l~~~v~~l~i~~~~~~v~d~m~~~ 368 (500)
+..+.+...+ ..+.+. +.+| .++++....++++.+.. .+.. + ..+....++.-.+|+-. ....
T Consensus 63 ~l~~~l~~~~-~~~~l~---D~~G---~vL~~~g~~~~~~~~~~~~~~~--G-~~w~E~~~GTnaig~al------~~~~ 126 (638)
T PRK11388 63 DAWEYMADRE-CALLIL---DETG---CILSRNGDPQTLQQLSALGFND--G-TYCAEGIIGTNALSLAA------ISGQ 126 (638)
T ss_pred HHHHHhcCCC-cEEEEE---cCCc---eEEEEeCCHHHHHHHHHcCCcc--C-CccchhccCcCHHHHHH------hcCC
Confidence 3334444444 566777 3466 79999998888876654 1111 0 12222333333333221 1234
Q ss_pred ceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEe
Q 010821 369 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 407 (500)
Q Consensus 369 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis 407 (500)
++.|...... .+.+......+.||.|.+|+++|+++
T Consensus 127 pv~v~g~EH~---~~~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 127 PVKTMGDQHF---KQALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred ceEEecHHHH---HHhccCceEEeeEEEcCCCCEEEEEE
Confidence 5556555433 33344556778999999999999996
No 281
>PRK10785 maltodextrin glucosidase; Provisional
Probab=34.63 E-value=1.3e+02 Score=33.25 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.1
Q ss_pred CCceeeEEEEecCC--CceEEEEEccCCCCCCCCCCcccCCC--CeEEEEEEcC--CceEEEEEEE--CCE
Q 010821 22 DTVLIPMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCP--TVFQIIWSIP--PGYHQYKFCV--DGE 84 (500)
Q Consensus 22 ~~~~~~~~f~~~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--~~~~~~~~L~--~g~~~ykf~V--Dg~ 84 (500)
....+.++++=+.+ .++|.|.-..++.....+|.+....+ ..|+++++++ ++++.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 44567777764433 47899976666544456887753222 3599999886 6888898988 553
No 282
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=29.64 E-value=45 Score=24.32 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=15.0
Q ss_pred EEE-EEcCCceEEEEEEE---CCEEeeCC
Q 010821 65 QII-WSIPPGYHQYKFCV---DGEWRHDE 89 (500)
Q Consensus 65 ~~~-~~L~~g~~~ykf~V---Dg~w~~d~ 89 (500)
++. -.||||.|.++-.+ +|.|..++
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 455 46999999998887 57787664
No 283
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=29.60 E-value=1.6e+02 Score=24.73 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=26.0
Q ss_pred eEEEEecCC--CceEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEE
Q 010821 27 PMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (500)
Q Consensus 27 ~~~f~~~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (500)
.++|+|... +.+|...+. ..|.....+. ..+..|+.++. .||.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~---~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESERVS---EEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCcccccccc---CCCCEEEEEec-CCcEEEEE
Confidence 677888753 466654311 1344221111 12457888886 68888875
No 284
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=29.24 E-value=1e+02 Score=33.16 Aligned_cols=109 Identities=13% Similarity=0.205 Sum_probs=69.5
Q ss_pred CceecCCCCcHH-HHHHHHHhcCCceeeEEecCCCCCCCceEEEEEehhhHHHHHHhhcccCCCCccccccccccccccc
Q 010821 278 PLVYAGPNDNLK-DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 356 (500)
Q Consensus 278 ~~v~v~~~~sl~-~a~~~m~~~~i~~lpVv~~d~~~~~~~~liGivs~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i~~ 356 (500)
.+..+..+..+. +.+..+.+++.+++||.+ .+.. ..+|.+=....++++... .++-..+
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~--~~~~---~~i~~~L~~~~~~~~~~~-------~~~~~~~-------- 274 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYE--QEPK---NKIGGLLVMNLLRLLQVE-------VPLEPLP-------- 274 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeecc--Cccc---chhhHHHHhhhhhhhccc-------ccccccc--------
Confidence 455666677775 666677789999999994 2322 234432222222222110 0111122
Q ss_pred cCcccCCCCCCCceEecCCCCHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHH
Q 010821 357 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 411 (500)
Q Consensus 357 ~~~~v~d~m~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~g~lvGiis~~Di 411 (500)
+.+.+..++..++.++++.+.++.+.+.+.+.+.|.+ ...-+++++..|+
T Consensus 275 ----v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 275 ----VSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred ----chhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 2333556788899999999999999887777777766 5678899999987
No 285
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=27.82 E-value=1.1e+02 Score=23.63 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=18.7
Q ss_pred CCEEEEEeCCCCeEEEEEehHHHHHH
Q 010821 472 VRRLVIVEAGSKRVEGIVSLSDIFKF 497 (500)
Q Consensus 472 ~~~l~VVd~~~g~liGiIS~~DIl~~ 497 (500)
...+-|||+ +|..+|++++++.++.
T Consensus 12 ~~~VrlI~~-~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDE-DGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-T-TS-EEEEEEHHHHHHH
T ss_pred CCEEEEECC-CCcEeceEEHHHHHHH
Confidence 466888995 7999999999998764
No 286
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.93 E-value=59 Score=35.81 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=21.9
Q ss_pred CCceEEEEEEECCEE---eeCCCCCeeeCC
Q 010821 71 PPGYHQYKFCVDGEW---RHDEHQPFISSE 97 (500)
Q Consensus 71 ~~g~~~ykf~VDg~w---~~d~~~~~~~~~ 97 (500)
..|.|+|||.++|+| +.|+..|+..+.
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 458999999999999 468888886553
No 287
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=26.79 E-value=1.5e+02 Score=22.97 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=27.1
Q ss_pred eEEEEecCC-CceEEE-EEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEE
Q 010821 27 PMRFVWPYG-GRSVFL-SGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (500)
Q Consensus 27 ~~~f~~~~~-~~~V~l-~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~yk 78 (500)
+++|++..+ +.+|.. .|.+.++....++. ..+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~---~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM---KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc---CCCCEEEEECC-CCEEEEEE
Confidence 567787765 566654 45554443222222 12456777776 67877664
No 288
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=25.87 E-value=90 Score=33.36 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhcCCCCEEEEEeCCCCeEEEEEehHHHHH
Q 010821 457 SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 496 (500)
Q Consensus 457 ~~tL~~a~~~m~~~~~~~l~VVd~~~g~liGiIS~~DIl~ 496 (500)
...+..+.+...+.+-.-|+|+. ++++.|+|-+.|+++
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 34678888999999999999998 699999999999975
No 289
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=23.91 E-value=2.6e+02 Score=24.21 Aligned_cols=51 Identities=20% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCCceEEEEEccCCCCCCCCCCcccCCCCeEEEEE---EcCCceEEEEEEE---CCEEeeCCC
Q 010821 34 YGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIW---SIPPGYHQYKFCV---DGEWRHDEH 90 (500)
Q Consensus 34 ~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~---~L~~g~~~ykf~V---Dg~w~~d~~ 90 (500)
.+++++....+..+. .|.|. +.-.|.+.+ .|+||.|+++-.+ ++.|....+
T Consensus 70 ~~~~k~~~~~~~~~~----~mAPN--S~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k~ 126 (140)
T PF11797_consen 70 KGSKKVLYTFKKENM----QMAPN--SNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTKD 126 (140)
T ss_pred CCCCeEEEEeeccCC----EECCC--CeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEEE
Confidence 334456665555443 34442 222333333 3789999999988 446876653
No 290
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=21.23 E-value=54 Score=27.12 Aligned_cols=19 Identities=16% Similarity=0.489 Sum_probs=14.3
Q ss_pred CCceEEEEEEECCEEeeCCC
Q 010821 71 PPGYHQYKFCVDGEWRHDEH 90 (500)
Q Consensus 71 ~~g~~~ykf~VDg~w~~d~~ 90 (500)
|-|-|+|.|. ||.|++.-.
T Consensus 65 p~G~~hf~~~-~~~W~~~r~ 83 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTRS 83 (105)
T ss_pred CCCCccceec-CCEEEECCC
Confidence 3377888884 999998744
No 291
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=20.95 E-value=2e+02 Score=21.04 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=19.8
Q ss_pred CCCeEEEEEEcCCceEEEEEEE--CCEEeeC
Q 010821 60 CPTVFQIIWSIPPGYHQYKFCV--DGEWRHD 88 (500)
Q Consensus 60 ~~~~~~~~~~L~~g~~~ykf~V--Dg~w~~d 88 (500)
.+|.|... .|++|.|..+... +|--..+
T Consensus 25 ~~G~~~f~-~L~~G~Y~l~E~~aP~GY~~~~ 54 (70)
T PF05738_consen 25 ENGKYTFK-NLPPGTYTLKETKAPDGYQLDD 54 (70)
T ss_dssp TTSEEEEE-EEESEEEEEEEEETTTTEEEEE
T ss_pred CCCEEEEe-ecCCeEEEEEEEECCCCCEECC
Confidence 45666554 6899999999997 7743333
No 292
>smart00612 Kelch Kelch domain.
Probab=20.88 E-value=81 Score=20.59 Aligned_cols=37 Identities=14% Similarity=0.241 Sum_probs=16.1
Q ss_pred EEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceE
Q 010821 39 VFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYH 75 (500)
Q Consensus 39 V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~ 75 (500)
+++.|-+++......+...+...+.|+..-+++.+++
T Consensus 2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~ 38 (47)
T smart00612 2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRS 38 (47)
T ss_pred EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccc
Confidence 6777777652211111111223445554444444443
No 293
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=20.72 E-value=3.2e+02 Score=24.39 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=29.2
Q ss_pred eEEEEEccCCCCCCCCCCcccCCCCeEEEEEEcCCceEEEEEEECCE--EeeCCCCC
Q 010821 38 SVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGE--WRHDEHQP 92 (500)
Q Consensus 38 ~V~l~Gsf~~W~~~~~m~~~~~~~~~~~~~~~L~~g~~~ykf~VDg~--w~~d~~~~ 92 (500)
.+.+.|.+..|+.. .+.+ +.....++++. .+.||+.+||+ +..|..+.
T Consensus 99 ~~~~~G~~~~~~~g-~~k~--g~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n~ 148 (167)
T PF04985_consen 99 VAVIRGRIKSVDPG-EWKP--GEKTETSIEFS----VTYYKLEIDGKEIIEIDKLNN 148 (167)
T ss_pred EEEEEEEEEeeCCc-ccCc--CccccceEEEE----EEEEEEEECCEEEEEEECccC
Confidence 36777888877653 2222 22233444443 57999999996 66665554
No 294
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=20.38 E-value=61 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=18.5
Q ss_pred CeEEEEEEcCCceEEEEEEECCEEeeCCC
Q 010821 62 TVFQIIWSIPPGYHQYKFCVDGEWRHDEH 90 (500)
Q Consensus 62 ~~~~~~~~L~~g~~~ykf~VDg~w~~d~~ 90 (500)
-.|-+. |.|-|+|.|. +|.|+++-.
T Consensus 58 QIWlas---~sG~~hf~~~-~~~W~~~r~ 82 (105)
T PRK00446 58 ELWLAA---KSGGFHFDYK-DGEWICDRS 82 (105)
T ss_pred heeEec---CCCCccceec-CCeEEECCC
Confidence 456665 4687888885 999998744
Done!