Query 010822
Match_columns 500
No_of_seqs 172 out of 525
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 14:59:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n2f_G Na+/K+ ATPase gamma sub 25.9 10 0.00035 25.6 -0.7 28 97-124 4-31 (31)
2 2xut_A Proton/peptide symporte 11.2 7.3E+02 0.025 24.5 8.7 46 320-369 56-101 (524)
3 1jb0_J Photosystem 1 reaction 10.7 1.9E+02 0.0064 20.7 2.7 22 322-343 7-28 (41)
4 2jo1_A Phospholemman; FXYD1, N 10.3 76 0.0026 25.3 0.7 30 97-126 10-39 (72)
5 3mk7_A Cytochrome C oxidase, C 8.5 1.6E+03 0.054 23.3 11.1 106 322-427 271-397 (474)
6 2jp3_A FXYD domain-containing 8.2 81 0.0028 24.8 0.1 30 97-126 11-40 (67)
7 1pw4_A Glycerol-3-phosphate tr 7.6 1.2E+03 0.039 22.2 8.3 46 319-369 63-108 (451)
8 2zxe_G FXYD10, phospholemman-l 7.2 90 0.0031 25.0 -0.1 30 97-126 13-42 (74)
9 3o7q_A L-fucose-proton symport 6.1 1.6E+03 0.054 21.1 8.8 102 320-431 63-166 (438)
10 1q90_G Cytochrome B6F complex 5.7 5E+02 0.017 18.1 3.0 23 325-347 10-32 (37)
No 1
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=25.93 E-value=10 Score=25.62 Aligned_cols=28 Identities=21% Similarity=0.386 Sum_probs=23.8
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHhh
Q 010822 97 HSPWNGCTLADFVMPFFLFIVGVAIALA 124 (500)
Q Consensus 97 Ha~WnG~t~aDlVfP~FLFivGvsi~lS 124 (500)
|-+|+.+....++|-..+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 5577888888899999999999998775
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=11.20 E-value=7.3e+02 Score=24.55 Aligned_cols=46 Identities=9% Similarity=-0.142 Sum_probs=26.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q 010822 320 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 369 (500)
Q Consensus 320 EGlLStlpai~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~llilG~ll 369 (500)
-|++.++..+...+.....|.+..+..+ +++ .+..+.++..++.++
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~l~dr~~g-~r~---~~~~~~~~~~~~~~~ 101 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGWIADRFFG-KYN---TILWLSLIYCVGHAF 101 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHTTSSC-SHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-chH---HHHHHHHHHHHHHHH
Confidence 4677788888887777788877754312 222 334454554555444
No 3
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=10.68 E-value=1.9e+02 Score=20.68 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 010822 322 LLSTISAILSGTIGIHYGHVLI 343 (500)
Q Consensus 322 lLStlpai~~~llG~~aG~~L~ 343 (500)
-|||-|-+++..+++.||-++.
T Consensus 7 yLstAPVla~~w~~~tAg~lIE 28 (41)
T 1jb0_J 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHH
Confidence 4899999999999999998874
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=10.32 E-value=76 Score=25.26 Aligned_cols=30 Identities=23% Similarity=0.481 Sum_probs=25.1
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010822 97 HSPWNGCTLADFVMPFFLFIVGVAIALALK 126 (500)
Q Consensus 97 Ha~WnG~t~aDlVfP~FLFivGvsi~lSl~ 126 (500)
|=+|+-+...-|||-..||++|+.|-+|=|
T Consensus 10 ~YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 10 TYDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp GCSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 345666777789999999999999999975
No 5
>3mk7_A Cytochrome C oxidase, CBB3-type, subunit N; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=8.53 E-value=1.6e+03 Score=23.31 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=53.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhcccc--ch---HHHHHHHHHHHHHHHHHHHHhcC-CCCCccccCCchhHH------HH
Q 010822 322 LLSTISAILSGTIGIHYGHVLIHFKG--HS---ARLKHWVSMGFGLLIIAIILHFT-NAIPINKQLYSFSYV------CF 389 (500)
Q Consensus 322 lLStlpai~~~llG~~aG~~L~~~~~--~~---~rl~~~l~~G~~llilG~ll~~~-~~~PiNK~LWT~SfV------L~ 389 (500)
+-++.+.+..+-.|+..=.++..-.+ .+ +...+|...++.+..+|.+.+.- ...|+|-.+=-.-|| .+
T Consensus 271 ~f~~~t~~i~vPt~i~vf~w~~Tl~~~~~~~~~~~~~~~~~~fi~~f~~gG~tG~~la~~~vd~~~H~T~~vvaHfH~~l 350 (474)
T 3mk7_A 271 LGMVMSLILLAPSWGGMINGMMTLSGAWHKLRSDPILRFLVVSLAFYGMSTFEGPMMAIKTVNALSHYTDWTIGHVHAGA 350 (474)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHGGGTTGGGHHHHCHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCChhHHHHHHHHHHHHHHHHHHHHHcchhhhhhcccceeehHHHHHHH
Confidence 34444444445555555555543222 11 12345555555555555444321 123555444333332 13
Q ss_pred HhHHHHHHHHHHHHHH-HhcCc-----c---ccchhhhhcchhHHHH
Q 010822 390 TAGAAGIVFSALYVLM-DVWEL-----R---TPFLFLKWIGMNAMLV 427 (500)
Q Consensus 390 TaG~a~l~La~~y~li-Dv~~~-----~---~~~~pf~~~G~Nal~v 427 (500)
..|..+.+++.+|++. ...+. + ++...+..+|+|-.+.
T Consensus 351 ~gg~~f~~~~~~y~~~P~~~g~~~~~~~~l~~~~Fwl~~iG~~l~f~ 397 (474)
T 3mk7_A 351 LGWVAMVSIGALYHLVPKVFGREQMHSIGLINTHFWLATIGTVLYIA 397 (474)
T ss_dssp HHTHHHHHHHHHHHHHHHHTTCSSCSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888887666 33443 1 2344677789997763
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=8.19 E-value=81 Score=24.84 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=25.4
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010822 97 HSPWNGCTLADFVMPFFLFIVGVAIALALK 126 (500)
Q Consensus 97 Ha~WnG~t~aDlVfP~FLFivGvsi~lSl~ 126 (500)
|=+|+-+...-|||-..||++|+.+-+|=|
T Consensus 11 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 11 YYDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 456677777889999999999999999975
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=7.62 E-value=1.2e+03 Score=22.18 Aligned_cols=46 Identities=15% Similarity=0.127 Sum_probs=30.0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHH
Q 010822 319 PEGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIIL 369 (500)
Q Consensus 319 PEGlLStlpai~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~llilG~ll 369 (500)
--|++.++..+...+....+|.+..+.. ++ +.+..|.++..+|.++
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g--~r---~~l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSN--PR---VFLPAGLILAAAVMLF 108 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSC--HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcC--ch---HHHHHHHHHHHHHHHH
Confidence 3578888888888888888888876432 22 2445555555555444
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=7.25 E-value=90 Score=25.03 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCCCCCCCcchhhHHHHHHHHHHHHHhhhc
Q 010822 97 HSPWNGCTLADFVMPFFLFIVGVAIALALK 126 (500)
Q Consensus 97 Ha~WnG~t~aDlVfP~FLFivGvsi~lSl~ 126 (500)
|=+|+-+...-|||-..||++|+.|-+|=|
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 456777778889999999999999999976
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=6.12 E-value=1.6e+03 Score=21.13 Aligned_cols=102 Identities=13% Similarity=0.016 Sum_probs=53.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCCchhH--HHHHhHHHHHH
Q 010822 320 EGLLSTISAILSGTIGIHYGHVLIHFKGHSARLKHWVSMGFGLLIIAIILHFTNAIPINKQLYSFSY--VCFTAGAAGIV 397 (500)
Q Consensus 320 EGlLStlpai~~~llG~~aG~~L~~~~~~~~rl~~~l~~G~~llilG~ll~~~~~~PiNK~LWT~Sf--VL~TaG~a~l~ 397 (500)
-|++.++..+..++.....|.+..+.. + ++.+..|.++..+|.++.. ..+...+.|..-. ++...|.+...
T Consensus 63 ~g~~~~~~~~~~~i~~~~~G~l~dr~g--~---r~~l~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~l~G~~~~~~~ 135 (438)
T 3o7q_A 63 AGLIQSAFYFGYFIIPIPAGILMKKLS--Y---KAGIITGLFLYALGAALFW--PAAEIMNYTLFLVGLFIIAAGLGCLE 135 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSC--H---HHHHHHHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhc--c---hHHHHHHHHHHHHHHHHHH--hccccccHHHHHHHHHHHHhhHHHhh
Confidence 378888888888888888888876432 2 2345566666666665531 0133344454433 33333333333
Q ss_pred HHHHHHHHHhcCccccchhhhhcchhHHHHHHHh
Q 010822 398 FSALYVLMDVWELRTPFLFLKWIGMNAMLVFVLG 431 (500)
Q Consensus 398 La~~y~liDv~~~~~~~~pf~~~G~Nal~vYv~s 431 (500)
-+..-++.|....++- -+.+|.......++.
T Consensus 136 ~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~g~ 166 (438)
T 3o7q_A 136 TAANPFVTVLGPESSG---HFRLNLAQTFNSFGA 166 (438)
T ss_dssp HHHHHHHHHSSCSTTH---HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHcCchhH---HHHHHHHHHHHHHHH
Confidence 3444555666543321 123455544444433
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=5.73 E-value=5e+02 Score=18.06 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccc
Q 010822 325 TISAILSGTIGIHYGHVLIHFKG 347 (500)
Q Consensus 325 tlpai~~~llG~~aG~~L~~~~~ 347 (500)
.+..|..++.|+++...++..++
T Consensus 10 VlGlipvtlaGLfv~Ay~QyrRg 32 (37)
T 1q90_G 10 VLGLVPVTIAGLFVTAYLQYLRG 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHhhHHHHHHHHHHHHHHHHhhc
Confidence 44556678889988888876544
Done!