Query 010822
Match_columns 500
No_of_seqs 172 out of 525
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 14:59:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010822.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010822hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54c_ f.25.1.1 (C:) Mitochon 19.8 2.1E+02 0.015 25.3 9.3 75 316-391 121-200 (259)
2 d1jb0j_ f.23.18.1 (J:) Subunit 16.9 47 0.0034 22.0 2.7 22 322-343 7-28 (41)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 12.1 4.2E+02 0.03 22.8 12.1 49 101-153 54-106 (447)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 9.6 3.1E+02 0.023 23.7 7.4 27 319-345 60-86 (447)
5 d1axda1 a.45.1.1 (A:81-210) Cl 8.0 56 0.0041 24.9 1.0 24 95-118 69-96 (129)
6 d3d31c1 f.58.1.1 (C:13-260) Su 4.7 3.6E+02 0.026 22.2 4.8 33 322-354 54-86 (248)
7 d3dtua1 f.24.1.1 (A:14-551) Ba 4.7 1.2E+03 0.09 22.2 11.0 107 321-427 333-456 (538)
8 d1pv7a_ f.38.1.2 (A:) Lactose 3.9 5E+02 0.036 21.3 5.0 25 321-345 46-70 (417)
9 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.6 4.1E+02 0.03 22.6 4.4 33 322-354 84-116 (290)
10 d1m56c_ f.25.1.1 (C:) Bacteria 3.5 1.1E+03 0.081 19.8 9.9 18 374-391 189-206 (265)
No 1
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.81 E-value=2.1e+02 Score=25.26 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=38.1
Q ss_pred CCCCcchhhhhHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHh---cC-CCCCccccCCchhHHHHH
Q 010822 316 PFEPEGLLSTISAILSGTIGIHYGHVLIH-FKGHSARLKHWVSMGFGLLIIAIILH---FT-NAIPINKQLYSFSYVCFT 390 (500)
Q Consensus 316 ~fDPEGlLStlpai~~~llG~~aG~~L~~-~~~~~~rl~~~l~~G~~llilG~ll~---~~-~~~PiNK~LWT~SfVL~T 390 (500)
+.||.++ ..++.++...-|+.+..-... .++++++.++++...+++.++=...+ +. ..+-++.+.+.++|-+.|
T Consensus 121 ~~~~~~l-pllnT~vLl~Ss~t~~~A~~~~~~~~~~~~~~~l~~t~~lg~~Fl~~q~~Ey~~~~~~~~~~~~gS~ff~lT 199 (259)
T d1v54c_ 121 PLNPLEV-PLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEAPFTISDGVYGSTFFVAT 199 (259)
T ss_dssp CCCTTSH-HHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCTTSHHHHHHHHHHH
T ss_pred ccchhhh-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHhhccCCCccCCCcchHHHHHH
Confidence 3466554 445555555555554433322 23444555566655555544333332 11 135667777777766665
Q ss_pred h
Q 010822 391 A 391 (500)
Q Consensus 391 a 391 (500)
+
T Consensus 200 G 200 (259)
T d1v54c_ 200 G 200 (259)
T ss_dssp H
T ss_pred H
Confidence 4
No 2
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=16.85 E-value=47 Score=22.02 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHh
Q 010822 322 LLSTISAILSGTIGIHYGHVLI 343 (500)
Q Consensus 322 lLStlpai~~~llG~~aG~~L~ 343 (500)
-|||-|-+++..+++.||-++.
T Consensus 7 ylstAPVla~~w~~~tAG~lIE 28 (41)
T d1jb0j_ 7 YLSTAPVLAAIWMTITAGILIE 28 (41)
T ss_dssp HTTBHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHHH
Confidence 4799999999999999998774
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=12.06 E-value=4.2e+02 Score=22.76 Aligned_cols=49 Identities=8% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhhc----cCCChhHHHHHHHHHHHHHHHHHHHHh
Q 010822 101 NGCTLADFVMPFFLFIVGVAIALALK----KVPKINGAVKKIIFRTLKLLFWGIILQ 153 (500)
Q Consensus 101 nG~t~aDlVfP~FLFivGvsi~lSl~----~~~~~~~~~~kil~Rsl~LfllGl~l~ 153 (500)
.|.|.+|.-.-.-++.+|.++.--+- .+..+ |+++.-+..+..++.++.
T Consensus 54 ~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~----r~~~~~~~~~~~~~~~~~ 106 (447)
T d1pw4a_ 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP----RVFLPAGLILAAAVMLFM 106 (447)
T ss_dssp STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc----hHHHHHHHHHHHHHHhhc
Confidence 58999988766666666655432221 22222 456666666666666554
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.62 E-value=3.1e+02 Score=23.66 Aligned_cols=27 Identities=19% Similarity=0.012 Sum_probs=21.1
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHHhcc
Q 010822 319 PEGLLSTISAILSGTIGIHYGHVLIHF 345 (500)
Q Consensus 319 PEGlLStlpai~~~llG~~aG~~L~~~ 345 (500)
--|++.++..+...+.....|.+..+.
T Consensus 60 ~~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 60 DLGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 347888888888888888888887654
No 5
>d1axda1 a.45.1.1 (A:81-210) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}
Probab=7.98 E-value=56 Score=24.86 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=17.6
Q ss_pred ccCCCC---CCCCcchh-hHHHHHHHHH
Q 010822 95 IDHSPW---NGCTLADF-VMPFFLFIVG 118 (500)
Q Consensus 95 l~Ha~W---nG~t~aDl-VfP~FLFivG 118 (500)
+++.+| +.+|+||+ .+|.+..+.-
T Consensus 69 L~~~~~l~Gd~~TlADi~~~~~~~~~~~ 96 (129)
T d1axda1 69 LTKCKYLAGDFLSLADLNHVSVTLCLFA 96 (129)
T ss_dssp HHHCSSSSSSSCCHHHHTTHHHHHHHTT
T ss_pred HccccccccCccccccHHHHHHHHHHHH
Confidence 566677 77999999 4677776643
No 6
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=4.72 E-value=3.6e+02 Score=22.25 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=22.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccchHHHHH
Q 010822 322 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKH 354 (500)
Q Consensus 322 lLStlpai~~~llG~~aG~~L~~~~~~~~rl~~ 354 (500)
..+.++++.++++|+..+..+.+.+.+.++..+
T Consensus 54 ~~a~~s~~i~~~lg~~~a~~~~~~~~~~~~~~~ 86 (248)
T d3d31c1 54 YAGFLATLLALLLGAPTGYILARFDFPGKRLVE 86 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchhhHHH
Confidence 456677778888999998888665544455443
No 7
>d3dtua1 f.24.1.1 (A:14-551) Bacterial aa3 type cytochrome c oxidase subunit I {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.68 E-value=1.2e+03 Score=22.15 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=52.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHHHHHHHHHhc-CCCCCccccCCchhHH------HHH
Q 010822 321 GLLSTISAILSGTIGIHYGHVLIH---FKGHSARLKHWVSMGFGLLIIAIILHF-TNAIPINKQLYSFSYV------CFT 390 (500)
Q Consensus 321 GlLStlpai~~~llG~~aG~~L~~---~~~~~~rl~~~l~~G~~llilG~ll~~-~~~~PiNK~LWT~SfV------L~T 390 (500)
-..++.+.+..+-.|+..-.++.. .+.+.+....+....+.+.++|-+-.. ....|+|-.+=-.-|| .+.
T Consensus 333 ~~f~~~T~~IaiPs~i~vfnwl~Tl~gg~~~~~~p~l~~l~fi~~F~iGG~tGi~la~~~~d~~~HdTy~VvaHFH~v~~ 412 (538)
T d3dtua1 333 SYFMMATMVIAVPTGIKIFSWIATMWGGSIELKTPMLWALGFLFLFTVGGVTGIVLSQASVDRYYHDTYYVVAHFHYVMS 412 (538)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHTTBHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHHHHHHhccccccccchhhhhhcccceeeeeeeeeeec
Confidence 344555555555555555555532 111112222233333333344433221 0125777776666666 444
Q ss_pred hHHHHHHHHHHHHHH-HhcCcc------ccchhhhhcchhHHHH
Q 010822 391 AGAAGIVFSALYVLM-DVWELR------TPFLFLKWIGMNAMLV 427 (500)
Q Consensus 391 aG~a~l~La~~y~li-Dv~~~~------~~~~pf~~~G~Nal~v 427 (500)
.|..+-+++.+|+.. ...+++ ++-..+..+|+|-.+.
T Consensus 413 ~g~v~~~~a~~y~w~Pk~tGr~~~~~l~~~hfwl~~iG~~l~f~ 456 (538)
T d3dtua1 413 LGAVFGIFAGIYFWIGKMSGRQYPEWAGKLHFWMMFVGANLTFF 456 (538)
T ss_dssp TTHHHHHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 566667777666665 444431 2233556679986554
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.86 E-value=5e+02 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=21.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhcc
Q 010822 321 GLLSTISAILSGTIGIHYGHVLIHF 345 (500)
Q Consensus 321 GlLStlpai~~~llG~~aG~~L~~~ 345 (500)
|++.++..+...+.....|.+..+.
T Consensus 46 g~i~s~~~l~~~i~~~~~G~l~Dr~ 70 (417)
T d1pv7a_ 46 GIIFAAISLFSLLFQPLFGLLSDKL 70 (417)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6888899999999999999888654
No 9
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.65 E-value=4.1e+02 Score=22.58 Aligned_cols=33 Identities=12% Similarity=-0.023 Sum_probs=23.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhccccchHHHHH
Q 010822 322 LLSTISAILSGTIGIHYGHVLIHFKGHSARLKH 354 (500)
Q Consensus 322 lLStlpai~~~llG~~aG~~L~~~~~~~~rl~~ 354 (500)
+++.+.++.++++|+.++..+.+.+...++...
T Consensus 84 ~~a~~~~~~~~~ig~~~a~~l~r~~~~~~~~~~ 116 (290)
T d2r6gg1 84 KVAGISAIGIVALSTTCAYAFARMRFPGKATLL 116 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCTTSHHHH
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHhhhhhHHHHH
Confidence 345667778888999999998766655555433
No 10
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.53 E-value=1.1e+03 Score=19.83 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=11.8
Q ss_pred CCCccccCCchhHHHHHh
Q 010822 374 AIPINKQLYSFSYVCFTA 391 (500)
Q Consensus 374 ~~PiNK~LWT~SfVL~Ta 391 (500)
...++-+.+.++|-+.|+
T Consensus 189 ~~~~~~~~~gs~ff~lTG 206 (265)
T d1m56c_ 189 AFGFAGNIYGANFFMATG 206 (265)
T ss_dssp SSCSSSSHHHHHHHHHHH
T ss_pred CCCcccchhHHHHHHHHH
Confidence 356777777777666654
Done!