BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010823
         (500 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P0L|A Chain A, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|B Chain B, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|C Chain C, Human Steroidogenic Acute Regulatory Protein
 pdb|3P0L|D Chain D, Human Steroidogenic Acute Regulatory Protein
          Length = 221

 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 235 VVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRD 294
           VV+   E ++E ++       EW+ + +   +++++ G    + H L  +     V PRD
Sbjct: 62  VVDQPMERLYEELVERMEAMGEWNPNVKEIKVLQKI-GKDTFITHELAAEAAGNLVGPRD 120

Query: 295 LCYVRYWRRNDDGSYVVLF-RSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRP-RTQ 352
              VR  +R   GS  VL   + +  N   Q G +RA     G     L P  G P +T+
Sbjct: 121 FVSVRCAKRR--GSTCVLAGMATDFGNMPEQKGVIRAE---HGPTCMVLHPLAGSPSKTK 175

Query: 353 VQHLMQIDLKGW 364
           +  L+ IDLKGW
Sbjct: 176 LTWLLSIDLKGW 187


>pdb|2R55|A Chain A, Human Star-Related Lipid Transfer Protein 5
 pdb|2R55|B Chain B, Human Star-Related Lipid Transfer Protein 5
          Length = 231

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 234 GVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPM-FVW 291
           G+V  + EE+++ V  ++ G R +WD +     +++ +     +   R       M  + 
Sbjct: 73  GIVYGTLEEVWDCVKPAVGGLRVKWDENVTGFEIIQSITDTLCV--SRTSTPSAAMKLIS 130

Query: 292 PRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRP-R 350
           PRD   +   +R +DG+        EH  C P+PG+VR      G    PL    G P +
Sbjct: 131 PRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLP---GEPTK 187

Query: 351 TQVQHLMQIDLKGW 364
           T +      DL G+
Sbjct: 188 TNLVTFFHTDLSGY 201


>pdb|2PSO|A Chain A, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|B Chain B, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
 pdb|2PSO|C Chain C, Human Stard13 (Dlc2) Lipid Transfer And Protein
           Localization Domain
          Length = 237

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 11/112 (9%)

Query: 254 RYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWP-RDLCYVRYWRRN-DDGSYVV 311
           R+ WD  F    +VE +D  T I  + L      M   P RD   +R W+ +   G   +
Sbjct: 98  RHLWDEDFVQWKVVETLDRQTEIYQYVLN----SMAPHPSRDFVVLRTWKTDLPKGMCTL 153

Query: 312 LFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKG 363
           +  S EHE      G VRA V    + I P     G  ++++ H+ +IDLKG
Sbjct: 154 VSLSVEHEE-AQLLGGVRAVVMDSQYLIEPC----GSGKSRLTHICRIDLKG 200


>pdb|1TZ9|A Chain A, Crystal Structure Of The Putative Mannonate Dehydratase
           From Enterococcus Faecalis, Northeast Structural
           Genomics Target Efr41
 pdb|1TZ9|B Chain B, Crystal Structure Of The Putative Mannonate Dehydratase
           From Enterococcus Faecalis, Northeast Structural
           Genomics Target Efr41
          Length = 367

 Score = 32.7 bits (73), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 287 PMFVWPR-DLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNI 339
           P+F W + DL Y      N+DGS  +LF     EN  P+  Y   H +S GF +
Sbjct: 118 PIFGWAKTDLAY-----ENEDGSLSLLFDQAVVENXQPEDXYQLIHSQSKGFRL 166


>pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex
 pdb|3U4Q|A Chain A, Structure Of Addab-Dna Complex At 2.8 Angstroms
          Length = 1232

 Score = 30.0 bits (66), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 206 CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYE 256
            +NG +   E L+ DY  RS  + +K++  ++   E + +LV+S  G R+E
Sbjct: 308 LRNGAKKLLEKLKTDYFTRSPEQHLKSLAEMKPVIETLVQLVISY-GKRFE 357


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,696,492
Number of Sequences: 62578
Number of extensions: 595340
Number of successful extensions: 1260
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 5
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)