Query 010823
Match_columns 500
No_of_seqs 220 out of 707
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 04:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 9E-114 2E-118 933.3 41.7 469 2-474 1-494 (719)
2 cd08904 START_STARD6-like Lipi 100.0 1.1E-37 2.3E-42 301.3 23.3 182 198-388 21-203 (204)
3 cd08868 START_STARD1_3_like Ch 100.0 6.9E-36 1.5E-40 288.3 23.2 184 194-388 19-205 (208)
4 cd08903 START_STARD5-like Lipi 100.0 3.4E-35 7.3E-40 284.5 22.5 184 198-390 21-207 (208)
5 cd08906 START_STARD3-like Chol 100.0 1E-34 2.2E-39 281.5 21.6 182 196-388 22-206 (209)
6 cd08867 START_STARD4_5_6-like 100.0 5.3E-34 1.1E-38 274.8 23.1 182 199-388 22-205 (206)
7 cd08869 START_RhoGAP C-termina 100.0 1.1E-33 2.4E-38 271.7 22.6 174 198-387 18-193 (197)
8 cd08905 START_STARD1-like Chol 100.0 3.8E-33 8.2E-38 270.3 19.8 180 198-388 24-206 (209)
9 cd08873 START_STARD14_15-like 100.0 9.9E-33 2.2E-37 271.2 22.8 180 168-362 22-205 (235)
10 cd08902 START_STARD4-like Lipi 100.0 5.3E-33 1.1E-37 265.6 20.0 180 197-388 21-201 (202)
11 cd08871 START_STARD10-like Lip 100.0 1.2E-32 2.7E-37 268.2 22.5 177 197-387 21-199 (222)
12 cd08909 START_STARD13-like C-t 100.0 2.5E-32 5.5E-37 263.7 22.0 174 199-387 27-201 (205)
13 cd08914 START_STARD15-like Lip 100.0 2.8E-32 6.1E-37 267.7 22.0 196 171-383 26-235 (236)
14 cd08911 START_STARD7-like Lipi 100.0 3.2E-32 6.8E-37 263.5 22.1 181 197-387 19-203 (207)
15 smart00234 START in StAR and p 100.0 7.2E-32 1.6E-36 257.6 22.7 179 197-387 17-199 (206)
16 cd08913 START_STARD14-like Lip 100.0 1.1E-31 2.4E-36 265.0 21.0 193 170-377 28-225 (240)
17 cd08872 START_STARD11-like Cer 100.0 2.1E-31 4.5E-36 262.8 20.6 183 198-389 25-225 (235)
18 cd08874 START_STARD9-like C-te 100.0 2.8E-31 6E-36 256.9 20.5 174 192-377 15-193 (205)
19 cd08910 START_STARD2-like Lipi 100.0 1.3E-30 2.7E-35 252.5 19.8 175 198-387 24-203 (207)
20 cd08870 START_STARD2_7-like Li 100.0 6.3E-30 1.4E-34 247.4 21.7 177 199-387 22-205 (209)
21 cd08907 START_STARD8-like C-te 100.0 7.5E-30 1.6E-34 244.4 19.5 176 197-387 25-201 (205)
22 PF01852 START: START domain; 100.0 6.2E-29 1.4E-33 236.7 23.3 180 197-387 17-199 (206)
23 cd00177 START Lipid-binding ST 100.0 1.2E-28 2.7E-33 229.7 23.1 175 199-386 15-190 (193)
24 cd08908 START_STARD12-like C-t 100.0 1.8E-28 4E-33 236.9 20.6 173 199-387 27-200 (204)
25 cd08876 START_1 Uncharacterize 100.0 5E-28 1.1E-32 229.7 22.3 177 197-387 15-193 (195)
26 cd08877 START_2 Uncharacterize 99.9 5.3E-27 1.1E-31 227.5 18.5 181 194-387 17-211 (215)
27 KOG2761 START domain-containin 99.9 3.4E-23 7.3E-28 199.4 18.6 183 195-387 25-211 (219)
28 cd08875 START_ArGLABRA2_like C 99.6 7.6E-14 1.6E-18 137.0 16.1 132 227-365 59-200 (229)
29 cd01251 PH_centaurin_alpha Cen 99.5 8.9E-14 1.9E-18 120.8 10.2 99 7-112 1-102 (103)
30 cd01260 PH_CNK Connector enhan 99.5 2.5E-13 5.3E-18 115.6 10.0 94 6-109 1-96 (96)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.4 2.3E-12 5E-17 125.4 14.7 120 253-378 64-196 (208)
32 cd01246 PH_oxysterol_bp Oxyste 99.4 1E-12 2.3E-17 109.0 10.1 91 7-109 1-91 (91)
33 KOG1739 Serine/threonine prote 99.4 5.7E-13 1.2E-17 139.8 7.2 184 193-385 397-597 (611)
34 PF00169 PH: PH domain; Inter 99.3 1.2E-11 2.7E-16 102.8 11.3 99 6-110 2-103 (104)
35 cd01252 PH_cytohesin Cytohesin 99.3 9.9E-12 2.1E-16 111.2 11.0 98 6-113 1-116 (125)
36 cd01265 PH_PARIS-1 PARIS-1 ple 99.3 7.4E-12 1.6E-16 107.2 9.2 91 7-109 1-93 (95)
37 cd01233 Unc104 Unc-104 pleckst 99.3 1.1E-11 2.4E-16 107.0 10.0 95 5-109 2-97 (100)
38 cd01257 PH_IRS Insulin recepto 99.3 2.8E-11 6E-16 105.2 10.8 90 5-108 2-100 (101)
39 cd01247 PH_GPBP Goodpasture an 99.3 3.3E-11 7.2E-16 102.6 10.4 90 7-108 1-90 (91)
40 cd01235 PH_SETbf Set binding f 99.3 3.5E-11 7.5E-16 102.7 10.3 96 7-110 1-101 (101)
41 cd01250 PH_centaurin Centaurin 99.2 3.7E-11 8.1E-16 100.3 9.6 94 7-109 1-94 (94)
42 cd01238 PH_Tec Tec pleckstrin 99.2 3.2E-11 7E-16 105.3 9.4 99 7-108 2-105 (106)
43 cd01236 PH_outspread Outspread 99.2 7.6E-11 1.6E-15 103.0 9.2 93 7-107 1-101 (104)
44 cd01266 PH_Gab Gab (Grb2-assoc 99.2 1.1E-10 2.3E-15 102.0 9.8 95 8-109 2-107 (108)
45 smart00233 PH Pleckstrin homol 99.2 3.4E-10 7.3E-15 92.2 11.5 99 6-110 2-101 (102)
46 cd01264 PH_melted Melted pleck 99.2 2.1E-10 4.4E-15 99.7 10.0 97 7-109 2-100 (101)
47 cd01241 PH_Akt Akt pleckstrin 99.2 1.8E-10 3.9E-15 99.8 9.6 94 5-109 1-101 (102)
48 cd01245 PH_RasGAP_CG5898 RAS G 99.0 6.2E-10 1.3E-14 96.3 7.6 89 8-108 2-97 (98)
49 PF15413 PH_11: Pleckstrin hom 99.0 2.9E-09 6.2E-14 94.0 9.3 94 7-109 1-112 (112)
50 cd01254 PH_PLD Phospholipase D 99.0 3.1E-09 6.7E-14 95.0 9.4 98 7-109 1-121 (121)
51 cd01219 PH_FGD FGD (faciogenit 98.9 8E-09 1.7E-13 89.4 10.7 96 6-112 3-101 (101)
52 cd07813 COQ10p_like Coenzyme Q 98.9 2E-08 4.4E-13 89.8 12.6 132 231-387 2-134 (138)
53 KOG0930 Guanine nucleotide exc 98.9 3.1E-09 6.6E-14 105.9 7.7 99 4-111 259-376 (395)
54 cd00900 PH-like Pleckstrin hom 98.9 1.3E-08 2.8E-13 82.8 9.9 97 7-109 1-99 (99)
55 cd01253 PH_beta_spectrin Beta- 98.9 1.1E-08 2.3E-13 88.3 8.6 96 7-109 1-104 (104)
56 cd01244 PH_RasGAP_CG9209 RAS_G 98.8 1.4E-08 3.1E-13 87.8 9.1 83 18-109 16-98 (98)
57 cd01237 Unc112 Unc-112 pleckst 98.8 2.1E-08 4.6E-13 87.6 9.3 82 24-109 20-102 (106)
58 cd01263 PH_anillin Anillin Ple 98.8 2.3E-08 5E-13 89.8 9.1 103 5-109 1-122 (122)
59 cd01220 PH_CDEP Chondrocyte-de 98.8 5.8E-08 1.3E-12 84.1 10.4 94 6-111 3-98 (99)
60 cd01256 PH_dynamin Dynamin ple 98.8 3.6E-08 7.9E-13 84.6 8.7 97 7-109 3-104 (110)
61 cd00821 PH Pleckstrin homology 98.7 4.2E-08 9.1E-13 79.1 7.9 95 7-109 1-96 (96)
62 cd08866 SRPBCC_11 Ligand-bindi 98.7 4.7E-07 1E-11 81.0 14.4 139 231-387 2-141 (144)
63 PF15409 PH_8: Pleckstrin homo 98.7 4.9E-08 1.1E-12 83.0 6.5 83 9-109 1-88 (89)
64 PF11274 DUF3074: Protein of u 98.6 1.2E-06 2.6E-11 84.0 14.8 135 237-375 13-171 (184)
65 cd07819 SRPBCC_2 Ligand-bindin 98.4 8.7E-06 1.9E-10 71.8 15.1 134 229-386 3-138 (140)
66 cd05018 CoxG Carbon monoxide d 98.3 1.4E-05 3E-10 70.8 13.1 136 230-387 3-142 (144)
67 cd01230 PH_EFA6 EFA6 Pleckstri 98.3 5.5E-06 1.2E-10 74.0 10.2 97 7-110 2-111 (117)
68 PF03364 Polyketide_cyc: Polyk 98.2 7.4E-05 1.6E-09 65.7 14.4 129 236-385 1-130 (130)
69 PF15410 PH_9: Pleckstrin homo 97.8 9.7E-05 2.1E-09 65.8 8.6 96 7-109 2-117 (119)
70 cd08861 OtcD1_ARO-CYC_like N-t 97.7 0.0007 1.5E-08 60.3 12.7 131 233-387 4-139 (142)
71 PF12814 Mcp5_PH: Meiotic cell 97.7 0.00046 1E-08 62.0 10.9 99 8-110 12-121 (123)
72 KOG0690 Serine/threonine prote 97.6 4.6E-05 9.9E-10 78.7 4.2 97 5-111 15-117 (516)
73 PRK10724 hypothetical protein; 97.6 0.0023 5E-08 59.9 14.7 134 227-385 14-148 (158)
74 cd01239 PH_PKD Protein kinase 97.5 0.00038 8.2E-09 61.8 8.2 95 7-109 2-117 (117)
75 cd07817 SRPBCC_8 Ligand-bindin 97.5 0.0043 9.3E-08 54.6 14.9 129 230-386 2-135 (139)
76 cd07821 PYR_PYL_RCAR_like Pyra 97.5 0.0049 1.1E-07 53.8 14.6 136 229-387 2-138 (140)
77 PF15408 PH_7: Pleckstrin homo 97.4 6.4E-05 1.4E-09 63.3 1.4 93 8-108 1-95 (104)
78 cd01234 PH_CADPS CADPS (Ca2+-d 97.3 0.00051 1.1E-08 60.0 6.4 99 6-112 3-112 (117)
79 cd01224 PH_Collybistin Collybi 97.3 0.0051 1.1E-07 54.4 12.0 98 7-108 4-105 (109)
80 cd01218 PH_phafin2 Phafin2 Pl 97.3 0.0029 6.4E-08 55.5 10.5 98 5-113 4-101 (104)
81 cd08860 TcmN_ARO-CYC_like N-te 97.3 0.014 3.1E-07 53.7 15.4 133 232-386 5-140 (146)
82 PF10604 Polyketide_cyc2: Poly 96.8 0.16 3.4E-06 44.2 17.5 131 229-386 3-136 (139)
83 cd01243 PH_MRCK MRCK (myotonic 96.7 0.019 4.2E-07 51.5 10.6 104 5-109 2-118 (122)
84 cd01261 PH_SOS Son of Sevenles 96.7 0.018 3.8E-07 51.3 10.4 98 6-111 5-110 (112)
85 KOG2200 Tumour suppressor prot 96.7 0.00041 8.9E-09 75.8 -0.3 88 288-387 574-661 (674)
86 cd07823 SRPBCC_5 Ligand-bindin 96.5 0.096 2.1E-06 47.3 14.0 136 231-387 2-143 (146)
87 cd01242 PH_ROK Rok (Rho- assoc 96.4 0.03 6.4E-07 49.7 9.9 101 6-110 1-110 (112)
88 cd07812 SRPBCC START/RHO_alpha 96.4 0.22 4.8E-06 41.7 15.0 133 231-385 2-138 (141)
89 cd08865 SRPBCC_10 Ligand-bindi 96.3 0.13 2.9E-06 44.5 13.7 129 232-387 3-137 (140)
90 PF06240 COXG: Carbon monoxide 96.2 0.21 4.6E-06 45.3 14.6 133 233-387 2-138 (140)
91 cd07824 SRPBCC_6 Ligand-bindin 96.2 0.22 4.7E-06 45.0 14.6 131 230-385 3-143 (146)
92 cd01259 PH_Apbb1ip Apbb1ip (Am 96.0 0.03 6.4E-07 49.8 7.8 99 6-109 1-107 (114)
93 PLN02866 phospholipase D 96.0 0.047 1E-06 64.2 11.5 99 6-111 183-308 (1068)
94 KOG3640 Actin binding protein 95.9 0.014 2.9E-07 67.2 6.2 107 3-112 988-1108(1116)
95 PF14593 PH_3: PH domain; PDB: 95.8 0.096 2.1E-06 46.0 9.8 89 5-113 13-102 (104)
96 KOG3845 MLN, STAR and related 95.5 0.00069 1.5E-08 67.8 -5.2 176 201-385 27-203 (241)
97 cd01221 PH_ephexin Ephexin Ple 95.4 0.14 3E-06 46.5 9.8 97 6-107 4-119 (125)
98 cd07818 SRPBCC_1 Ligand-bindin 95.3 0.86 1.9E-05 40.8 14.8 133 229-386 3-146 (150)
99 cd01222 PH_clg Clg (common-sit 95.2 0.2 4.4E-06 43.4 9.8 91 6-110 5-95 (97)
100 PTZ00267 NIMA-related protein 95.0 0.038 8.3E-07 59.8 6.0 97 4-110 376-476 (478)
101 cd01249 PH_oligophrenin Oligop 95.0 0.22 4.9E-06 43.8 9.4 93 7-107 1-102 (104)
102 cd08862 SRPBCC_Smu440-like Lig 94.8 1.3 2.9E-05 38.6 14.2 128 230-387 3-135 (138)
103 cd01258 PH_syntrophin Syntroph 94.4 0.11 2.4E-06 46.0 6.3 99 9-108 3-107 (108)
104 KOG1090 Predicted dual-specifi 94.3 0.021 4.5E-07 66.0 1.9 94 7-110 1636-1731(1732)
105 cd07822 SRPBCC_4 Ligand-bindin 94.2 3 6.4E-05 36.1 15.1 132 230-385 2-137 (141)
106 COG2867 Oligoketide cyclase/li 93.7 0.77 1.7E-05 42.7 10.6 113 229-365 3-115 (146)
107 cd01223 PH_Vav Vav pleckstrin 93.1 0.48 1E-05 42.5 7.9 86 24-110 20-111 (116)
108 cd01225 PH_Cool_Pix Cool (clon 92.2 0.4 8.7E-06 42.6 6.2 75 24-109 28-108 (111)
109 COG3427 Carbon monoxide dehydr 91.2 5.5 0.00012 37.2 12.8 128 230-387 3-142 (146)
110 KOG2059 Ras GTPase-activating 90.9 0.26 5.7E-06 55.6 4.5 94 7-109 567-663 (800)
111 KOG3751 Growth factor receptor 90.0 0.97 2.1E-05 49.7 7.7 101 3-109 315-423 (622)
112 cd07820 SRPBCC_3 Ligand-bindin 89.3 15 0.00033 32.5 14.0 108 232-363 3-113 (137)
113 KOG4424 Predicted Rho/Rac guan 88.3 1.1 2.4E-05 49.8 6.7 96 7-113 274-372 (623)
114 PTZ00283 serine/threonine prot 88.1 1.1 2.4E-05 49.1 6.7 50 57-111 441-490 (496)
115 KOG1117 Rho- and Arf-GTPase ac 87.5 2.1 4.6E-05 49.6 8.5 97 9-109 496-600 (1186)
116 cd07816 Bet_v1-like Ligand-bin 86.7 25 0.00054 32.1 16.9 119 230-364 3-122 (148)
117 cd07825 SRPBCC_7 Ligand-bindin 86.2 23 0.00049 31.2 15.1 30 230-260 2-31 (144)
118 KOG1117 Rho- and Arf-GTPase ac 86.1 0.76 1.7E-05 53.1 4.1 80 21-109 1048-1130(1186)
119 cd07814 SRPBCC_CalC_Aha1-like 84.6 25 0.00055 30.3 13.4 30 230-260 2-31 (139)
120 cd01232 PH_TRIO Trio pleckstri 83.4 10 0.00022 33.9 9.2 86 25-112 26-114 (114)
121 cd01240 PH_beta-ARK Beta adren 79.9 3.2 6.9E-05 37.0 4.6 101 5-117 3-105 (116)
122 cd01262 PH_PDK1 3-Phosphoinosi 75.2 15 0.00033 31.5 7.3 83 7-109 3-87 (89)
123 cd01248 PH_PLC Phospholipase C 73.1 15 0.00032 32.2 7.1 85 24-108 21-114 (115)
124 KOG3531 Rho guanine nucleotide 72.4 1.1 2.4E-05 51.6 -0.2 93 7-109 926-1018(1036)
125 KOG1737 Oxysterol-binding prot 68.1 2.6 5.6E-05 49.0 1.5 38 6-46 78-115 (799)
126 PF11687 DUF3284: Domain of un 67.6 83 0.0018 28.0 10.8 112 230-373 1-114 (120)
127 COG5637 Predicted integral mem 65.8 1.2E+02 0.0026 29.6 11.8 126 229-385 71-205 (217)
128 KOG0521 Putative GTPase activa 64.1 4.8 0.0001 47.0 2.7 99 7-116 276-374 (785)
129 cd01227 PH_Dbs Dbs (DBL's big 61.9 58 0.0012 30.0 8.7 90 25-118 31-123 (133)
130 TIGR01599 PYST-A Plasmodium yo 60.6 1.8E+02 0.0039 28.8 19.4 120 228-356 59-208 (208)
131 PF15405 PH_5: Pleckstrin homo 57.5 21 0.00045 32.7 5.1 40 70-109 95-134 (135)
132 KOG3549 Syntrophins (type gamm 56.3 9.9 0.00022 40.2 3.1 102 4-110 280-386 (505)
133 KOG3543 Ca2+-dependent activat 55.5 6.2 0.00013 44.5 1.5 94 7-113 466-568 (1218)
134 KOG1451 Oligophrenin-1 and rel 50.1 34 0.00074 38.7 6.1 100 3-109 263-366 (812)
135 KOG0248 Cytoplasmic protein Ma 48.7 13 0.00027 42.6 2.6 97 7-117 251-348 (936)
136 KOG1739 Serine/threonine prote 47.8 18 0.00039 39.9 3.5 88 7-109 20-115 (611)
137 KOG4236 Serine/threonine prote 46.7 16 0.00034 41.1 2.9 99 4-110 412-523 (888)
138 KOG4047 Docking protein 1 (p62 46.5 19 0.00041 39.3 3.4 102 1-109 4-116 (429)
139 PF15406 PH_6: Pleckstrin homo 40.9 61 0.0013 29.0 5.1 54 43-107 57-110 (112)
140 cd01231 PH_Lnk LNK-family Plec 40.4 73 0.0016 28.2 5.5 35 70-108 72-106 (107)
141 KOG3531 Rho guanine nucleotide 39.2 33 0.00071 40.3 4.0 92 7-118 752-852 (1036)
142 KOG3723 PH domain protein Melt 38.5 14 0.00029 41.6 0.9 98 6-111 736-837 (851)
143 COG3832 Uncharacterized conser 36.8 3.2E+02 0.007 24.9 9.6 32 227-259 7-38 (149)
144 cd08893 SRPBCC_CalC_Aha1-like_ 35.9 2.8E+02 0.006 23.7 10.3 30 230-260 2-31 (136)
145 KOG1264 Phospholipase C [Lipid 35.0 42 0.0009 39.4 4.0 45 71-116 871-915 (1267)
146 cd01228 PH_BCR-related BCR (br 34.2 43 0.00094 29.2 3.1 80 6-109 4-93 (96)
147 KOG3177 Oligoketide cyclase/li 30.6 5.3E+02 0.011 25.8 10.2 117 227-365 67-184 (227)
148 cd01226 PH_exo84 Exocyst compl 29.4 1.2E+02 0.0026 26.6 5.1 91 6-110 3-98 (100)
149 cd08898 SRPBCC_CalC_Aha1-like_ 28.1 53 0.0011 28.7 2.8 31 230-261 3-33 (145)
150 KOG0932 Guanine nucleotide exc 27.8 23 0.0005 39.8 0.4 80 25-109 533-616 (774)
151 KOG1738 Membrane-associated gu 27.0 17 0.00037 41.1 -0.7 39 6-44 563-601 (638)
152 cd08899 SRPBCC_CalC_Aha1-like_ 26.4 50 0.0011 30.2 2.4 32 227-259 10-41 (157)
153 PF15404 PH_4: Pleckstrin homo 24.8 3.4E+02 0.0074 26.4 7.8 99 7-108 1-183 (185)
154 KOG0592 3-phosphoinositide-dep 23.8 1.2E+02 0.0027 34.2 5.1 70 23-109 464-536 (604)
155 PF02829 3H: 3H domain; Inter 22.3 1.5E+02 0.0032 25.9 4.4 44 53-109 16-59 (98)
156 PF14784 ECIST_Cterm: C-termin 20.4 2.7E+02 0.0058 25.5 5.8 18 92-109 95-112 (126)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=8.8e-114 Score=933.26 Aligned_cols=469 Identities=88% Similarity=1.372 Sum_probs=436.7
Q ss_pred CCCceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEe
Q 010823 2 SSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 81 (500)
Q Consensus 2 ~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~ 81 (500)
++.+.||||||++|+||||++|||+|||||+|++|+|||++|.++++|||+|+||+||||||+|||+|||++||||+|||
T Consensus 1 ~~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn 80 (719)
T PLN00188 1 ASKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYN 80 (719)
T ss_pred CCcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeEEEeecCHHHHHHHHHHHHHHHhhhhcccccCCCcccccccccccCCCCCCCCCccccccccccccccccccc
Q 010823 82 KKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQVSNGNKYVSFEYKSGMDNGRNGSSSDHESQFSAQEDEDDGHLNL 161 (500)
Q Consensus 82 ~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 161 (500)
+++|++|+||||.|+|||++||+||++|++|+++....++.+|+++++...+.+|++.++++++++++.++..++.++.+
T Consensus 81 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 160 (719)
T PLN00188 81 KKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRDL 160 (719)
T ss_pred CCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCccc
Confidence 99999999999999999999999999999999999888888999999999999999999999999888877777888899
Q ss_pred eeeeecCCCCCCCcccCCccccccccccccccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHH
Q 010823 162 MRRTTIGNGPPDLVHDWTRELDSDLSNQNINNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCE 241 (500)
Q Consensus 162 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe 241 (500)
.|++|||+|||.++.+||...+..+.++++.+|+++.+.|+++.|+||++||++..+.++.++++.++||++|||+|+|+
T Consensus 161 ~r~~tig~gp~~s~~~~t~~~~~~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~mKavGVV~aspE 240 (719)
T PLN00188 161 LRRTTIGNGPPDSVLDWTKEFDSELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEATCE 240 (719)
T ss_pred ceeeeccCCCcchhcccccccCccccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCceeEEEEEecCCHH
Confidence 99999999999999999999988888999999999999999999999999999998888777778899999999999999
Q ss_pred HHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCC
Q 010823 242 EIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC 321 (500)
Q Consensus 242 ~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~ 321 (500)
+||++||++++.|.+||.++.++++||+||+||+|+|+++++.|+|+.++|||||++|+|++.+||+|+|+++||+||+|
T Consensus 241 ~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGsYvil~~Sv~Hp~c 320 (719)
T PLN00188 241 EIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENC 320 (719)
T ss_pred HHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCcEEEeeeeeecCCC
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchhhhhhHHHHHHHHHHHh---------hhcCCCC
Q 010823 322 GPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQQHCLFQMLNSVA---------DERSAHP 392 (500)
Q Consensus 322 Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~vn~~~~s~~~~~L~~la---------~~~~~~~ 392 (500)
||++|||||++++|||+|.|++..+|.++|+|+|++++|||||++.++.++.++++++||++|+ ++....+
T Consensus 321 PP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y~~s~~~~~~l~mL~~VAgLrE~~~~~~~~~~~~ 400 (719)
T PLN00188 321 GPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYIPSFQQHCLLQMLNSVAGLREWFSQTDERGAPP 400 (719)
T ss_pred CCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCccccccCccccccchHHHHHHHHHHHHHHhcCcccCccc
Confidence 9999999999999999999998777777999999999999999999999999999999999998 3455599
Q ss_pred CcccccccccccccccccccccCCCCCCCCcccccCcCCCccccccCCCCCCcccCCCccccc----------------c
Q 010823 393 RIPVMVNMASASVSSKKNQNLQDSLIHPSSSLDQLNAGSRHSVMMDEYSDEDEEFQLAESEQE----------------V 456 (500)
Q Consensus 393 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~de~FdvpE~~~~----------------~ 456 (500)
|+|.+++|+.....+++++.+++.+ ...+..+..+++++|+|++||+||||||||++++ +
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~dE~~~~~e~~~~~~~~k~~~~~~~~~~~~ 476 (719)
T PLN00188 401 RIPVMVNMASASVSSKKNQKPQESS----PSLDQTNAASRNSVMMDEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEP 476 (719)
T ss_pred cceeecccccccccccccccccccc----cccccccccchhhhhhccccccchhccCCCcccccccccccccccccccCC
Confidence 9999999999887777776555443 2234455666777799999999999999999763 1
Q ss_pred ccccccccccccccccee
Q 010823 457 WFTLESSSFSSKLLSQLL 474 (500)
Q Consensus 457 ~~~~d~s~~~~~~~~~~~ 474 (500)
+++||+|||+|+|++++.
T Consensus 477 ~~~~d~~~~~g~l~~~~~ 494 (719)
T PLN00188 477 QDKIDLSCFSGNLRRDDR 494 (719)
T ss_pred cccccccccccccccCCC
Confidence 668999999999998875
No 2
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.1e-37 Score=301.26 Aligned_cols=182 Identities=18% Similarity=0.274 Sum_probs=164.5
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEE
Q 010823 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (500)
Q Consensus 198 ~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIV 277 (500)
.++|++.+.++|++||+++... . .++++|++|+|+++|++|++++.+. +.|.+||+++.++++||+||++|+|+
T Consensus 21 ~~gWk~~k~~~~~~v~~k~~~~-~----~gkl~k~egvi~~~~e~v~~~l~~~-e~r~~Wd~~~~~~~iie~Id~~T~I~ 94 (204)
T cd08904 21 TSGWKVVKTSKKITVSWKPSRK-Y----HGNLYRVEGIIPESPAKLIQFMYQP-EHRIKWDKSLQVYKMLQRIDSDTFIC 94 (204)
T ss_pred ccCCeEEecCCceEEEEEEcCC-C----CceEEEEEEEecCCHHHHHHHHhcc-chhhhhcccccceeeEEEeCCCcEEE
Confidence 3799999999999999997541 1 2699999999999999999999874 58999999999999999999999999
Q ss_pred EEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEE
Q 010823 278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (500)
Q Consensus 278 Y~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~ 357 (500)
|..+.. .+...++|||||.+|+|++.++|.|+++..||+||+|||++|||||++++|||+|+|++++++ .|+++|++
T Consensus 95 ~~~~~~-~~~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~--~t~l~~~~ 171 (204)
T cd08904 95 HTITQS-FAMGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPA--YSKLVMFV 171 (204)
T ss_pred EEeccc-ccCCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCC--ceEEEEEE
Confidence 988654 223459999999999999988899999999999999999999999999999999999987554 79999999
Q ss_pred eeecCCCccchh-hhhhHHHHHHHHHHHhhhc
Q 010823 358 QIDLKGWGVGYL-SMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 358 ~vDpkGwips~v-n~~~~s~~~~~L~~la~~~ 388 (500)
++|||||||.++ |+++++.+++|+.+|++++
T Consensus 172 ~~DlkG~lP~~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 172 QPELRGNLSRSVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EeCCCCCCCHHHHHHHhHHHHHHHHHHHHHhc
Confidence 999999998874 9999999999999999874
No 3
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=6.9e-36 Score=288.25 Aligned_cols=184 Identities=20% Similarity=0.378 Sum_probs=164.2
Q ss_pred ccccCCCcEEEEeeC-CeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHh-cCCCCccchhcccceeEEEEEec
Q 010823 194 QAFSRKHWRLLQCQN-GLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVD 271 (500)
Q Consensus 194 d~~~~~~Wkl~~~kn-GV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~-d~d~~R~eWD~~~~~~~vVE~iD 271 (500)
+++...+|++..+++ |++||++..++. ++++|++++|++|+++||+.|+ |.+ .|++||+.+.++++|+++|
T Consensus 19 ~~~~~~~W~l~~~~~~~i~i~~r~~~~~------~~~~k~~~~i~~~~~~v~~~l~~d~~-~~~~Wd~~~~~~~~i~~~d 91 (208)
T cd08868 19 SILTDPGWKLEKNTTWGDVVYSRNVPGV------GKVFRLTGVLDCPAEFLYNELVLNVE-SLPSWNPTVLECKIIQVID 91 (208)
T ss_pred HHhcCCCceEEEecCCCCEEEEEEcCCC------ceEEEEEEEEcCCHHHHHHHHHcCcc-ccceecCcccceEEEEEec
Confidence 345566999999987 999999988731 4799999999999999997655 543 7999999999999999999
Q ss_pred CceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCce
Q 010823 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRT 351 (500)
Q Consensus 272 d~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t 351 (500)
++++|+|..+++. +||++++||||++|+|++.+ |.|+|+.+|++||++|+++|||||....|||+|+|+++++ .+|
T Consensus 92 ~~~~i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~--~~t 167 (208)
T cd08868 92 DNTDISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNP--NKC 167 (208)
T ss_pred CCcEEEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCC--Cce
Confidence 9999999887654 67999999999999999875 7799999999999999999999999999999999998533 389
Q ss_pred EEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhhc
Q 010823 352 QVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 352 ~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~~ 388 (500)
.|+|++++|||||||.|+ |++++.+++.++.+|++..
T Consensus 168 ~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08868 168 NFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRI 205 (208)
T ss_pred EEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHH
Confidence 999999999999999986 9999999999999999764
No 4
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=100.00 E-value=3.4e-35 Score=284.49 Aligned_cols=184 Identities=21% Similarity=0.312 Sum_probs=161.6
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCC-CccchhcccceeEEEEEecCceeE
Q 010823 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 198 ~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~-~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
.++|++.+++||++||++..... .++.||++|+|++++++|+++|+|.+. .|.+||.++.++++||++|+++.|
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~~~-----~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i 95 (208)
T cd08903 21 ESGWKTCRRTNEVAVSWRPSAEF-----AGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSV 95 (208)
T ss_pred ccCCEEEEcCCCEEEEeeecCCC-----CCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEE
Confidence 57999999999999999965311 246799999999999999999997643 689999999999999999999998
Q ss_pred EEEEEecccC-CCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 277 LYHRLQLDWF-PMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 277 VY~~~~~~~~-P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
+|.. .+|. ++++++||||++|+|++.++|+|++...|+.||.|||++|||||+.+++||+++|++.+++ +|.|+|
T Consensus 96 ~~~~--~p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~~~~--~t~v~~ 171 (208)
T cd08903 96 CRTV--TPSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPGEPD--KTQLVS 171 (208)
T ss_pred EEEe--cchhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCCCCC--ceEEEE
Confidence 7763 2222 1249999999999999999999999999999999999999999999999999999986443 899999
Q ss_pred EEeeecCCCccchh-hhhhHHHHHHHHHHHhhhcCC
Q 010823 356 LMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADERSA 390 (500)
Q Consensus 356 i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~~~~ 390 (500)
++++|||||||.|+ |++++..++.+|.+|++.++.
T Consensus 172 ~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 172 FFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 99999999999985 999999999999999987543
No 5
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1e-34 Score=281.50 Aligned_cols=182 Identities=20% Similarity=0.322 Sum_probs=161.8
Q ss_pred ccCCCcEEEEee-CCeEEEEEecccCCCCccccceEEEEEEecccHHHHH-HHHhcCCCCccchhcccceeEEEEEecCc
Q 010823 196 FSRKHWRLLQCQ-NGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIF-ELVMSMDGTRYEWDCSFQYGSLVEEVDGH 273 (500)
Q Consensus 196 ~~~~~Wkl~~~k-nGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~Vf-evL~d~d~~R~eWD~~~~~~~vVE~iDd~ 273 (500)
.+.++|++.+.+ +|++||++..+.. ++.||++++|++|++.|| ++|.|++ .|++||+++.++++|++++++
T Consensus 22 ~~~~~W~l~~~~~~gi~V~s~~~~~~------~~~fk~~~~v~~~~~~l~~~ll~D~~-~~~~W~~~~~~~~vi~~~~~~ 94 (209)
T cd08906 22 AQEENWKFEKNNDNGDTVYTLEVPFH------GKTFILKAFMQCPAELVYQEVILQPE-KMVLWNKTVSACQVLQRVDDN 94 (209)
T ss_pred hcccCCEEEEecCCCCEEEEeccCCC------CcEEEEEEEEcCCHHHHHHHHHhChh-hccccCccchhhhheeeccCC
Confidence 346799998865 9999999877621 489999999999999997 6888865 799999999999999999999
Q ss_pred eeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEE
Q 010823 274 TAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQV 353 (500)
Q Consensus 274 tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~V 353 (500)
++|+| .+..+|++|++++||||++|+|.+.+++ |+++..|+.|+.+||++|||||+++.+||.|.|.+.+++ .|+|
T Consensus 95 ~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~--~t~v 170 (209)
T cd08906 95 TLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPS--VCTF 170 (209)
T ss_pred cEEEE-EEccccccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCC--ceEE
Confidence 99988 6666667779999999999999987665 888999999999999999999999999999999754344 8999
Q ss_pred EEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhhc
Q 010823 354 QHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 354 T~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~~ 388 (500)
||++|+|||||||.|+ |+++...|+.+|++|++.+
T Consensus 171 t~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~ 206 (209)
T cd08906 171 IWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRI 206 (209)
T ss_pred EEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999985 9999999999999999764
No 6
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=100.00 E-value=5.3e-34 Score=274.78 Aligned_cols=182 Identities=20% Similarity=0.321 Sum_probs=161.1
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcC-CCCccchhcccceeEEEEEecCceeEE
Q 010823 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSM-DGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (500)
Q Consensus 199 ~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~-d~~R~eWD~~~~~~~vVE~iDd~tdIV 277 (500)
.+|++.++++|++||++... ++ ..+++|++|+|++++++|+++|.+. ...|.+||..+.++++|++++++++|+
T Consensus 22 ~~W~~~~~~~~i~v~~~~~~-~~----~~~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~ 96 (206)
T cd08867 22 DGWKVLKTVKNITVSWKPST-EF----TGHLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVG 96 (206)
T ss_pred CCcEEEEcCCCcEEEEecCC-CC----CCEEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEE
Confidence 78999999999999999644 21 2478999999999999999999883 237999999999999999999999998
Q ss_pred EEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEE
Q 010823 278 YHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (500)
Q Consensus 278 Y~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~ 357 (500)
|... +....+++++||||++++|++.++|.|+++..||+||.+|+.+|||||....|||+|+|++.+++ +|.+||++
T Consensus 97 ~~~~-p~~~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~--~t~~~~~~ 173 (206)
T cd08867 97 RTIT-PSAAMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPD--KSFLVLYV 173 (206)
T ss_pred EEEc-cccccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCC--ceEEEEEE
Confidence 7753 22123569999999999999998899999999999999999999999999999999999985443 89999999
Q ss_pred eeecCCCccchh-hhhhHHHHHHHHHHHhhhc
Q 010823 358 QIDLKGWGVGYL-SMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 358 ~vDpkGwips~v-n~~~~s~~~~~L~~la~~~ 388 (500)
++|||||||.|+ |+++...++.++++|++++
T Consensus 174 ~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 174 QTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 999999999985 9999999999999999763
No 7
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.1e-33 Score=271.69 Aligned_cols=174 Identities=24% Similarity=0.326 Sum_probs=157.2
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEE
Q 010823 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAIL 277 (500)
Q Consensus 198 ~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIV 277 (500)
..+|++..+++||+||++..+.+ ...+.+|++++|+++|++|+++|++ .|.+||+.+.++++|++++++++|+
T Consensus 18 ~~~W~~~~~~~gi~I~~k~~~~~----~~l~~~K~~~~v~a~~~~v~~~l~d---~r~~Wd~~~~~~~vie~id~~~~i~ 90 (197)
T cd08869 18 SKGWVSVSSSDHVELAFKKVDDG----HPLRLWRASTEVEAPPEEVLQRILR---ERHLWDDDLLQWKVVETLDEDTEVY 90 (197)
T ss_pred cCCceEEecCCcEEEEEEeCCCC----CcEEEEEEEEEeCCCHHHHHHHHHH---HHhccchhhheEEEEEEecCCcEEE
Confidence 58999999999999999988522 1368999999999999999999976 4899999999999999999999999
Q ss_pred EEEEecccCCCcCCCceEEEEEEEEEc-CCCcEEEEEEecCCC-CCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 278 YHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHE-NCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 278 Y~~~~~~~~P~~vs~RDFV~lR~wrr~-eDGsyvI~~~SV~hp-~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
|+.+. .|||+++||||++|.|++. ++|.|+|+.+||.|| .+|+ |||||....|||+|+|++ ++ +|+|||
T Consensus 91 y~~~~---~p~pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~--~~--~t~vty 161 (197)
T cd08869 91 QYVTN---SMAPHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCG--SG--KSRVTH 161 (197)
T ss_pred EEEee---CCCCCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECC--CC--CeEEEE
Confidence 98876 5789999999999999864 778999999999995 6676 999999999999999996 33 899999
Q ss_pred EEeeecCCCccchhhhhhHHHHHHHHHHHhhh
Q 010823 356 LMQIDLKGWGVGYLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 356 i~~vDpkGwips~vn~~~~s~~~~~L~~la~~ 387 (500)
++++|||||+|.|+++...+.+...|.+|++.
T Consensus 162 ~~~~Dp~G~iP~wl~N~~~~~~~~~~~~l~~~ 193 (197)
T cd08869 162 ICRVDLRGRSPEWYNKVYGHLCARELLRIRDS 193 (197)
T ss_pred EEEECCCCCCCceeecchHhHHHHHHHHHHhh
Confidence 99999999999999887789999999999975
No 8
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=100.00 E-value=3.8e-33 Score=270.34 Aligned_cols=180 Identities=18% Similarity=0.309 Sum_probs=157.0
Q ss_pred CCCcEEEE-eeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHh-cCCCCccchhcccceeEEEEEecCcee
Q 010823 198 RKHWRLLQ-CQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM-SMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (500)
Q Consensus 198 ~~~Wkl~~-~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~-d~d~~R~eWD~~~~~~~vVE~iDd~td 275 (500)
.++|++.+ +++|++||++..++. +++||++++|++|+++|++.|. +++ .+++|++++.++++|+++|+++.
T Consensus 24 ~~~W~~~~~~~~gi~v~s~~~~~~------~k~~k~e~~i~~~~~~l~~~l~~d~e-~~~~W~~~~~~~~vl~~id~~~~ 96 (209)
T cd08905 24 QEGWKTEIVAENGDKVLSKVVPDI------GKVFRLEVVVDQPLDNLYSELVDRME-QMGEWNPNVKEVKILQRIGKDTL 96 (209)
T ss_pred ccCCEEEEecCCCCEEEEEEcCCC------CcEEEEEEEecCCHHHHHHHHHhchh-hhceecccchHHHHHhhcCCCce
Confidence 46999995 589999999987732 3899999999999999995544 544 79999999999999999999999
Q ss_pred EEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 276 IVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
|+|. ...+|..|++++||||++|+|++. ++.++++..|+.|+.+|+++|||||+...|||+|+|++++++ +|+|+|
T Consensus 97 i~y~-~~~p~p~~~vs~RD~V~~~~~~~~-~~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~--~t~v~~ 172 (209)
T cd08905 97 ITHE-VAAETAGNVVGPRDFVSVRCAKRR-GSTCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPS--KTKLTW 172 (209)
T ss_pred EEEE-EeccCCCCccCccceEEEEEEEEc-CCcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCC--ceEEEE
Confidence 9997 443332345999999999999987 456778889999999999999999999999999999975444 899999
Q ss_pred EEeeecCCCccchh-hhhhHHHHHHHHHHHhhhc
Q 010823 356 LMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 356 i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~~ 388 (500)
++++|||||||.|+ |+++...|+.+|.+|++.+
T Consensus 173 ~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~ 206 (209)
T cd08905 173 LLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRM 206 (209)
T ss_pred EEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHH
Confidence 99999999999986 9999999999999999763
No 9
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=9.9e-33 Score=271.24 Aligned_cols=180 Identities=21% Similarity=0.242 Sum_probs=160.6
Q ss_pred CCCCCCCcccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHH
Q 010823 168 GNGPPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFE 245 (500)
Q Consensus 168 g~~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~Vfe 245 (500)
-+.-..++..|+..|++.|+|+|. ...+.+.++|++..+++||+||+++.. ....||+++++++|+++|++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~s-------~~l~fk~e~~vd~s~~~v~d 94 (235)
T cd08873 22 LQREVPLSVAWDRSNQMYLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQD-------GVLSFCVELKVQTCASDAFD 94 (235)
T ss_pred cCccCceEcccCccccEEEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecCC-------CceEEEEEEEecCCHHHHHH
Confidence 344577899999999999999886 667778999999999999999999832 25789999999999999999
Q ss_pred HHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEc-CC-CcEEEEEEecCCCCCCC
Q 010823 246 LVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DD-GSYVVLFRSREHENCGP 323 (500)
Q Consensus 246 vL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~-eD-GsyvI~~~SV~hp~~Pp 323 (500)
+|.|.+ .|++||..+.++++|++++++..|+|..+. +||++++||||++++|++. ++ +.|+|..+||.|+.+||
T Consensus 95 lL~D~~-~R~~WD~~~~e~evI~~id~d~~iyy~~~p---~PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV~h~~~Pp 170 (235)
T cd08873 95 LLSDPF-KRPEWDPHGRSCEEVKRVGEDDGIYHTTMP---SLTSEKPNDFVLLVSRRKPATDGDPYKVAFRSVTLPRVPQ 170 (235)
T ss_pred HHhCcc-hhhhhhhcccEEEEEEEeCCCcEEEEEEcC---CCCCCCCceEEEEEEEEeccCCCCeEEEEEeeeecccCCC
Confidence 999975 799999999999999999998888777654 6789999999999999984 33 45999999999999999
Q ss_pred CCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecC
Q 010823 324 QPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLK 362 (500)
Q Consensus 324 ~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpk 362 (500)
++|||||....|||+|+|+++ + .|+|||++|+||+
T Consensus 171 ~kgyVR~~~~~ggW~I~p~~~--~--~t~VtY~~~~dPg 205 (235)
T cd08873 171 TPGYSRTEVACAGFVIRQDCG--T--CTEVSYYNETNPK 205 (235)
T ss_pred CCCeEEEEEEeeeEEEEECCC--C--cEEEEEEEEcCCC
Confidence 999999999999999999973 3 8999999999996
No 10
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=5.3e-33 Score=265.58 Aligned_cols=180 Identities=19% Similarity=0.308 Sum_probs=160.2
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeE
Q 010823 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
.+++|++.+.++|+.||.++.+ .++ +++||++|+|+..+++|++.|.+. ..|.+||++++++++||+||++|.|
T Consensus 21 ~~~~Wkl~k~~~~~~v~~k~~~-ef~----gkl~R~Egvv~~~~~ev~d~v~~~-~~r~~Wd~~v~~~~Iie~Id~dt~I 94 (202)
T cd08902 21 LEEEWRVAKKSKDVTVWRKPSE-EFG----GYLYKAQGVVEDVYNRIVDHIRPG-PYRLDWDSLMTSMDIIEEFEENCCV 94 (202)
T ss_pred cccCcEEEEeCCCEEEEEecCC-cCC----CceEEEEEEecCCHHHHHHHHhcc-cchhcccchhhheeHhhhhcCCcEE
Confidence 4579999999999999999875 223 799999999999999999999875 4799999999999999999999999
Q ss_pred EEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEE
Q 010823 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHL 356 (500)
Q Consensus 277 VY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i 356 (500)
+++. ++..+..+|+|||||.++++.+.+||. +++..|++|+..|| |||||+++++||++.|+++++ .+|.+||+
T Consensus 95 ~~yv-t~~~~~~iISpRDFVdv~~~~~~~d~~-~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~~p--~k~~~t~~ 168 (202)
T cd08902 95 MRYT-TAGQLLNIISPREFVDFSYTTQYEDGL-LSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKDNP--SHSLLTGY 168 (202)
T ss_pred EEEE-cccCCcCccCccceEEEEEEEEeCCCe-EEEEeeecCCCCCC--CeEeecccccEEEEEECCCCC--CceEEEEE
Confidence 7444 344466899999999999999998886 67799999998877 999999999999999999755 48999999
Q ss_pred EeeecCCCccc-hhhhhhHHHHHHHHHHHhhhc
Q 010823 357 MQIDLKGWGVG-YLSMFQQHCLFQMLNSVADER 388 (500)
Q Consensus 357 ~~vDpkGwips-~vn~~~~s~~~~~L~~la~~~ 388 (500)
+++|||||||. .+|+++++.+++|+.+|++++
T Consensus 169 lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 169 IQTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 99999999965 679999999999999999874
No 11
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=100.00 E-value=1.2e-32 Score=268.16 Aligned_cols=177 Identities=19% Similarity=0.338 Sum_probs=162.0
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhcccceeEEEEEecCcee
Q 010823 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV-~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~td 275 (500)
..++|++..+++||+||++..++ +..+++|+++++ +++++.++++|+|.+ .|++||+++.++++|++++++++
T Consensus 21 ~~~~W~~~~~~~gi~iy~r~~~~-----~~~~~~k~~~~~~~~s~e~~~~~l~D~~-~r~~Wd~~~~e~~~ie~~d~~~~ 94 (222)
T cd08871 21 STDGWKLKYNKNNVKVWTKNPEN-----SSIKMIKVSAIFPDVPAETLYDVLHDPE-YRKTWDSNMIESFDICQLNPNND 94 (222)
T ss_pred CCCCcEEEEcCCCeEEEEeeCCC-----CceEEEEEEEEeCCCCHHHHHHHHHChh-hhhhhhhhhceeEEEEEcCCCCE
Confidence 45689999999999999998763 236899999987 689999999999864 79999999999999999999999
Q ss_pred EEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 276 IVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
|+|..++ +||++++||||++|.|+..+ |.|+|+.+|+.|+.+|+++|+|||.+..+||+|+|++ ++ +|.|||
T Consensus 95 i~y~~~~---~P~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~--~~--~t~vt~ 166 (222)
T cd08871 95 IGYYSAK---CPKPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG--PK--GCTLTY 166 (222)
T ss_pred EEEEEeE---CCCCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECC--CC--CEEEEE
Confidence 9999887 78899999999999998875 8899999999999999999999999999999999997 33 799999
Q ss_pred EEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 356 LMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 356 i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
++++||+||||.|+ |+++...+..+|++|++.
T Consensus 167 ~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~ 199 (222)
T cd08871 167 VTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKA 199 (222)
T ss_pred EEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999986 999999999999999855
No 12
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=2.5e-32 Score=263.67 Aligned_cols=174 Identities=24% Similarity=0.291 Sum_probs=155.0
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEE
Q 010823 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (500)
Q Consensus 199 ~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY 278 (500)
.+|......+++.++.+....+ +..+++|+++.|+++|++|++.+.+ .|++||.++.++++||++|+|++|+|
T Consensus 27 k~w~~~~~~~~~e~~ykK~~d~----~~lk~~r~~~ei~~~p~~VL~~vl~---~R~~WD~~~~~~~~ie~ld~~tdi~~ 99 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVGDG----NPLRLWKVSVEVEAPPSVVLNRVLR---ERHLWDEDFLQWKVVETLDKQTEVYQ 99 (205)
T ss_pred cCCcccCCcCCeEEEEecCCCC----CceEEEEEEEEeCCCHHHHHHHHHh---hHhhHHhhcceeEEEEEeCCCcEEEE
Confidence 5777777777777755543312 3478999999999999999999865 59999999999999999999999999
Q ss_pred EEEecccCCCcCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEE
Q 010823 279 HRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (500)
Q Consensus 279 ~~~~~~~~P~~vs~RDFV~lR~wrr~-eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~ 357 (500)
+.++ .|+|+++||||++|+|++. ++|+|+|+.+||+|+++|+. |+|||.+..+||+|+|++ +| +|+|||++
T Consensus 100 y~~~---~~~P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~--~g--~trvt~i~ 171 (205)
T cd08909 100 YVLN---CMAPHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCG--SG--KSRLTHIC 171 (205)
T ss_pred EEee---cCCCCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECC--CC--CEEEEEEE
Confidence 9987 4568999999999999987 68999999999999999995 999999999999999997 34 89999999
Q ss_pred eeecCCCccchhhhhhHHHHHHHHHHHhhh
Q 010823 358 QIDLKGWGVGYLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 358 ~vDpkGwips~vn~~~~s~~~~~L~~la~~ 387 (500)
++|||||+|.|+++...+++..-|.+|++.
T Consensus 172 ~vDpkG~~P~W~~n~~g~~~~~~~~~~r~s 201 (205)
T cd08909 172 RVDLKGHSPEWYNKGFGHLCAAEAARIRNS 201 (205)
T ss_pred EecCCCCChHHHHHhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999975
No 13
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=2.8e-32 Score=267.70 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=170.3
Q ss_pred CCCCcccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHh
Q 010823 171 PPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVM 248 (500)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~ 248 (500)
-..++.+|+..|+..|+|+|. .....+.++|++..+++||+||+++ ++ +...+|+++++++|+++++++|.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~-~s------~~l~fk~e~~vdvs~~~l~~LL~ 98 (236)
T cd08914 26 EVPLCIHWDIGNQASLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLE-EH------DVLSVWVEKHVKRPAHLAYRLLS 98 (236)
T ss_pred cCceecccCCCceEEEeeCCHHHhhhhcccCCCEEEEccCCEEEEEec-CC------CcEEEEEEEEEcCCHHHHHHHHh
Confidence 567889999999999999886 5667788999999999999999996 31 25799999999999999999999
Q ss_pred cCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCC-cCCCceEEEEEEEEEcC-CCc-EEEEEEecCCCCCCCCC
Q 010823 249 SMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPM-FVWPRDLCYVRYWRRND-DGS-YVVLFRSREHENCGPQP 325 (500)
Q Consensus 249 d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~-~vs~RDFV~lR~wrr~e-DGs-yvI~~~SV~hp~~Pp~~ 325 (500)
|++ .|++||..+.++++|+++|++.. +|+... .|| |+++||||+++.+++.. +|. |+|..+||.||.+||.+
T Consensus 99 D~~-~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~---pPw~Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SVp~~~~Pp~k 173 (236)
T cd08914 99 DFT-KRPLWDPHFLSCEVIDWVSEDDQ-IYHITC---PIVNNDKPKDLVVLVSRRKPLKDGNTYVVAVKSVILPSVPPSP 173 (236)
T ss_pred Chh-hhchhHHhhceEEEEEEeCCCcC-EEEEec---CCCCCCCCceEEEEEEEEecCCCCCEEEEEEeecccccCCCCC
Confidence 986 79999999999999999999998 577765 667 89999999999988765 785 99999999999999999
Q ss_pred CeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hh------h--hHHHHHHHHHH
Q 010823 326 GYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SM------F--QQHCLFQMLNS 383 (500)
Q Consensus 326 g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~------~--~~s~~~~~L~~ 383 (500)
||||+.....||+|+|++. + .|+|||++|+|| |++|+|. |- + ..+.+.+||+.
T Consensus 174 g~VRv~~~~~G~~I~pl~~--~--~~~VtY~~~~dP-g~lp~~~~n~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd08914 174 QYIRSEIICAGFLIHAIDS--N--SCTVSYFNQISA-SILPYFAGNLGGWSKSIEETAASCIQFLEN 235 (236)
T ss_pred CcEEeEEEEEEEEEEEcCC--C--cEEEEEEEEcCC-ccchheEEecchhhhHHHHHHHHHHHHHhc
Confidence 9999999999999999973 3 899999999999 9999884 21 1 23566666653
No 14
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=100.00 E-value=3.2e-32 Score=263.45 Aligned_cols=181 Identities=16% Similarity=0.228 Sum_probs=162.1
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhcccceeEEEEEecC-ce
Q 010823 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG-HT 274 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV-~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd-~t 274 (500)
+.++|+++.+++||+||++..++ +..+.||+++++ ++|+++++++++|.+ .|.+||.++.++++|++.++ ++
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~-----s~~~~~k~~~~~~d~s~~~~~~~~~D~~-~r~~Wd~~~~~~~~le~~~~~~~ 92 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG-----TGLYEYKVYGSFDDVTARDFLNVQLDLE-YRKKWDATAVELEVVDEDPETGS 92 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC-----CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHhhheeEEEEEccCCCCC
Confidence 34679999999999999998873 236799999977 899999999999975 79999999999999999755 89
Q ss_pred eEEEEEEecccCCCcCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEE
Q 010823 275 AILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQV 353 (500)
Q Consensus 275 dIVY~~~~~~~~P~~vs~RDFV~lR~wrr~-eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~V 353 (500)
+|+|+.++ +|||+++||||+.|.+++. ++|.|+|+.+|+.||.+|+++||||+....|+|+|+|+++. +.+.|.+
T Consensus 93 ~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~-~~~~~~~ 168 (207)
T cd08911 93 EIIYWEMQ---WPKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF-DEPGFEF 168 (207)
T ss_pred EEEEEEEE---CCCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC-CCCCeEE
Confidence 99999987 8999999999999998777 45678999999999999999999999999999999999631 1137999
Q ss_pred EEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 354 QHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 354 T~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
+|+.+.|||||||.|+ |.++++.+..+|++|+++
T Consensus 169 ~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a 203 (207)
T cd08911 169 VLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNA 203 (207)
T ss_pred EEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHH
Confidence 9999999999999985 999999999999999987
No 15
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=100.00 E-value=7.2e-32 Score=257.57 Aligned_cols=179 Identities=34% Similarity=0.485 Sum_probs=159.7
Q ss_pred cCCCcEEEEe-eCCeEEEEEecccCCCCccccceEEEEEEecccHHH-HHHHHhcCCCCccchhcccceeEEEEEecCce
Q 010823 197 SRKHWRLLQC-QNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEE-IFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT 274 (500)
Q Consensus 197 ~~~~Wkl~~~-knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~-VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~t 274 (500)
...+|++..+ ++|+.+|++..+++ +.++.+|++++|++++++ +.+++.|.. .|++||+.+.++++|+++++++
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~v~~~~~~~~~~~~~d~~-~r~~Wd~~~~~~~~ie~~~~~~ 91 (206)
T smart00234 17 SEPGWVLSSENENGDEVRSILSPGR----SPGEASRAVGVVPMVCADLVEELMDDLR-YRPEWDKNVAKAETLEVIDNGT 91 (206)
T ss_pred CCCccEEccccCCcceEEEEccCCC----CceEEEEEEEEEecChHHHHHHHHhccc-chhhCchhcccEEEEEEECCCC
Confidence 4578999997 89999999977532 247899999999999997 556676654 7999999999999999999999
Q ss_pred eEEEEEEecccCCC-cCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEE
Q 010823 275 AILYHRLQLDWFPM-FVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQV 353 (500)
Q Consensus 275 dIVY~~~~~~~~P~-~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~V 353 (500)
.|+|+.++ +|| |+++||||++|+|++.++|.|+|+.+|+.|+.+|+.+|+|||.+..|||+|+|+++ + .|+|
T Consensus 92 ~i~~~~~~---~~~~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~--~--~t~v 164 (206)
T smart00234 92 VIYHYVSK---FVAGPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN--G--PSKV 164 (206)
T ss_pred eEEEEEEe---cccCcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC--C--CeEE
Confidence 99988876 566 99999999999999988899999999999999999999999999999999999974 3 6999
Q ss_pred EEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 354 QHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 354 T~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
||+.++||+||+|.|+ |.+++..+..+++.+++.
T Consensus 165 t~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~ 199 (206)
T smart00234 165 TWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVAT 199 (206)
T ss_pred EEEEEEecCCCccceeehhhhhhhHHHHHHHHHHH
Confidence 9999999999999885 999999999999999865
No 16
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=1.1e-31 Score=265.04 Aligned_cols=193 Identities=23% Similarity=0.285 Sum_probs=167.4
Q ss_pred CCCCCcccCCcccccccccccc--ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHH
Q 010823 170 GPPDLVHDWTRELDSDLSNQNI--NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELV 247 (500)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL 247 (500)
.-..++.+|+..|+..|+|+|. ..-+.+.++|++.++++||+||+++.+ ..+.||++++|++|+++|+++|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~s-------~~~~fK~e~~vd~s~e~v~~lL 100 (240)
T cd08913 28 TEVPLSVPWDPSNQVYLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEED-------KFLSFKVEMVVHVDAAQAFLLL 100 (240)
T ss_pred ccCceecccCccceeEEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeCC-------CccEEEEEEEEcCCHHHHHHHH
Confidence 3467899999999999999887 555667889999999999999997643 2579999999999999999999
Q ss_pred hcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEc-CCC-cEEEEEEecCCCCCCCCC
Q 010823 248 MSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG-SYVVLFRSREHENCGPQP 325 (500)
Q Consensus 248 ~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~-eDG-syvI~~~SV~hp~~Pp~~ 325 (500)
.|.+ .|++||..+.++++|+++|++.. +|+...++| +|++++||||+++.|++. ++| .|+|+.+|+.||.+||++
T Consensus 101 ~D~~-~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp~k 177 (240)
T cd08913 101 SDLR-RRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPPTP 177 (240)
T ss_pred hChh-hhhhhHhhccEEEEEEecCCCcE-EEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCCCC
Confidence 9875 79999999999999999999875 588776553 369999999999999775 444 699999999999999999
Q ss_pred CeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hhhhHHHH
Q 010823 326 GYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCL 377 (500)
Q Consensus 326 g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~ 377 (500)
|||||....|||+|.|++ ++ .|+|||+.++||+ +||.|+ |.+....+
T Consensus 178 gyVR~~~~~ggw~i~p~~--~~--~t~vtY~~~~dPG-~LP~~~~N~~~~~~p 225 (240)
T cd08913 178 EYTRGETLCSGFCIWEES--DQ--LTKVSYYNQATPG-VLPYISTDIAGLSSE 225 (240)
T ss_pred CcEEeeecccEEEEEECC--CC--cEEEEEEEEeCCc-cccHHHhhhhhhccc
Confidence 999999999999999986 33 8999999999996 999986 77765443
No 17
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.98 E-value=2.1e-31 Score=262.77 Aligned_cols=183 Identities=17% Similarity=0.259 Sum_probs=156.1
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeE
Q 010823 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 198 ~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~-a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
..+|+++.+++|++||++..+.++. ....+||+++|+ +++++++++|.|.+ .|.+||.++.++++|++++++++|
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~---~~~~~Ka~~~v~~vt~~~~~~~l~D~~-~r~~Wd~~~~~~~vie~l~~~~~I 100 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGV---VLDPLKATHAVKGVTGHEVCHYFFDPD-VRMDWETTLENFHVVETLSQDTLI 100 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCc---eeeeEEEEEEECCCCHHHHHHHHhChh-hHHHHHhhhheeEEEEecCCCCEE
Confidence 4589999999999999998874211 112699999999 89999999999975 799999999999999999999999
Q ss_pred EEEEEecccCCCcCCCceEEEEEEEEEcCC-------CcEEEEEEecCCCCCCCCCCeEEEEEce----eEEEEEeCC--
Q 010823 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRNDD-------GSYVVLFRSREHENCGPQPGYVRAHVES----GGFNISPLK-- 343 (500)
Q Consensus 277 VY~~~~~~~~P~~vs~RDFV~lR~wrr~eD-------GsyvI~~~SV~hp~~Pp~~g~VRa~i~~----gGwvI~Pl~-- 343 (500)
+|+.++ +|||+++||||++++|++.++ +.|+++..|++||.+|+++||||+.... ++|++.|.+
T Consensus 101 ~Y~~~k---~PwPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~ 177 (235)
T cd08872 101 FHQTHK---RVWPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQ 177 (235)
T ss_pred EEEEcc---CCCCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcc
Confidence 998877 789999999999999998755 6789999999999999999999999743 444444422
Q ss_pred ---CCCCCCceEEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhhcC
Q 010823 344 ---PRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADERS 389 (500)
Q Consensus 344 ---~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~~~ 389 (500)
.+++ .|+|||++++|||||+|.|+ |++.+.....+|+++...+.
T Consensus 178 ~~t~~~~--~~~ity~~~~dPgG~iP~wvvn~~~k~~~P~~l~~~~~~~~ 225 (235)
T cd08872 178 EITRDNI--LCKITYVANVNPGGWAPASVLRAVYKREYPKFLKRFTSYVQ 225 (235)
T ss_pred cccCCCC--eEEEEEEEEeCCCCCccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 1133 89999999999999999986 99999999999999986533
No 18
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.98 E-value=2.8e-31 Score=256.86 Aligned_cols=174 Identities=17% Similarity=0.256 Sum_probs=151.5
Q ss_pred ccccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEec
Q 010823 192 NNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (500)
Q Consensus 192 ~~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iD 271 (500)
...+.+.++|++.++++||+||++..+++ .+.||++++|++|+++|+++|.|+. .|++||..+.++++|++++
T Consensus 15 l~~~~~~~gW~l~~~~~gI~Vy~k~~~~~------~~~~~ge~~v~as~~~v~~ll~D~~-~r~~Wd~~~~~~~vl~~~~ 87 (205)
T cd08874 15 LDQCQATAGWSYQCLEKDVVIYYKVFNGT------YHGFLGAGVIKAPLATVWKAVKDPR-TRFLYDTMIKTARIHKTFT 87 (205)
T ss_pred HHhhhccCCcEEEecCCCEEEEEecCCCC------cceEEEEEEEcCCHHHHHHHHhCcc-hhhhhHHhhhheeeeeecC
Confidence 45566789999999999999999986632 5799999999999999999999975 7999999999999999999
Q ss_pred CceeEEEEEEecccCCCcC--CCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCC-CeEEEEEceeEEEEEeCCCCCCC
Q 010823 272 GHTAILYHRLQLDWFPMFV--WPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQP-GYVRAHVESGGFNISPLKPRNGR 348 (500)
Q Consensus 272 d~tdIVY~~~~~~~~P~~v--s~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~-g~VRa~i~~gGwvI~Pl~~~~g~ 348 (500)
+++.|+|+++. +||++ ++||||+++.|++. ++.++|..+||.||.+|+.+ |||||....|||+|+|++.+ +.
T Consensus 88 ~d~~i~y~~~~---~Pwp~~~~~RDfV~l~~~~~~-~~~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~-g~ 162 (205)
T cd08874 88 EDICLVYLVHE---TPLCLLKQPRDFCCLQVEAKE-GELSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE-GN 162 (205)
T ss_pred CCeEEEEEEec---CCCCCCCCCCeEEEEEEEEEC-CCcEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC-CC
Confidence 99999888875 45666 99999999988775 45566999999999999996 99999999999999999542 11
Q ss_pred CceEEEEEEeeecC-CCccchh-hhhhHHHH
Q 010823 349 PRTQVQHLMQIDLK-GWGVGYL-SMFQQHCL 377 (500)
Q Consensus 349 ~~t~VT~i~~vDpk-Gwips~v-n~~~~s~~ 377 (500)
.+|+|||++|+||+ |.||.|+ |++++..|
T Consensus 163 ~~t~vty~~q~DPggg~iP~~l~N~~~~~~p 193 (205)
T cd08874 163 QYTRVIYIAQVALCGPDVPAQLLSSLSKRQP 193 (205)
T ss_pred CcEEEEEEEEECCCCCCCCHHHHhHHHHhcc
Confidence 38999999999999 7999997 88877655
No 19
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.97 E-value=1.3e-30 Score=252.49 Aligned_cols=175 Identities=22% Similarity=0.325 Sum_probs=155.9
Q ss_pred CCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeE
Q 010823 198 RKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 198 ~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~-a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
.++|+++.+++||+||++..++ +..+.+|++++++ ++++.++++++|.+ .|++||..+.+ +++..+++++|
T Consensus 24 ~~~W~l~~~~~~i~Vy~r~~~~-----s~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~--~~~~~~~~~~i 95 (207)
T cd08910 24 GAAWELLVESSGISIYRLLDEQ-----SGLYEYKVFGVLEDCSPSLLADVYMDLE-YRKQWDQYVKE--LYEKECDGETV 95 (207)
T ss_pred CCCeEEEEecCCeEEEEeccCC-----CCcEEEEEEEEEcCCCHHHHHHHHhCHH-HHHHHHHHHHh--heeecCCCCEE
Confidence 4689999999999999998763 2368999999998 69999999999975 79999999986 67888889999
Q ss_pred EEEEEecccCCCcCCCceEEEEEEEEEc-CCC--cEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEE
Q 010823 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDG--SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQV 353 (500)
Q Consensus 277 VY~~~~~~~~P~~vs~RDFV~lR~wrr~-eDG--syvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~V 353 (500)
+|+.++ +|||+++||||++|.++.. .+| .++|+.+|+.||.+|+++|+||+....|+|+|+|.+. + .|++
T Consensus 96 ~y~~~k---~PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~--~--~t~i 168 (207)
T cd08910 96 IYWEVK---YPFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK--K--GSKV 168 (207)
T ss_pred EEEEEE---cCCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC--C--ceEE
Confidence 999987 8899999999999877643 334 4688999999999999999999999999999999863 3 7999
Q ss_pred EEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 354 QHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 354 T~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
+|+.++||||+||.|+ |.+++..+..+|++|+++
T Consensus 169 ~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 169 FMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred EEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999986 999999999999999976
No 20
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.97 E-value=6.3e-30 Score=247.43 Aligned_cols=177 Identities=15% Similarity=0.160 Sum_probs=160.3
Q ss_pred CCcEEEEeeCC----eEEEEEecccCCCCccccceEEEEEEe-cccHHHHHHHHhcCCCCccchhcccceeEEEEEecC-
Q 010823 199 KHWRLLQCQNG----LRIFEELLEVDYLPRSCSRAMKAVGVV-EASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDG- 272 (500)
Q Consensus 199 ~~Wkl~~~knG----V~Vy~k~~~~~~~~~s~~~~~KavgvV-~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd- 272 (500)
.+|+++.+++| ++||++..++. ....||+++++ ++|++.|+++|+|.+ .|++||.++.+.++|+..++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~s-----~~~~~k~~~~~~~~s~~~~~~~l~D~~-~r~~Wd~~~~~~~~le~~~~~ 95 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKGT-----GLYEYLVRGVFEDCTPELLRDFYWDDE-YRKKWDETVIEHETLEEDEKS 95 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCCC-----CceEEEEEEEEcCCCHHHHHHHHcChh-hHhhhhhheeeEEEEEecCCC
Confidence 68999999999 99999987732 36899999999 469999999999975 79999999999999999655
Q ss_pred ceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceE
Q 010823 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQ 352 (500)
Q Consensus 273 ~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~ 352 (500)
+++|+|+.++ +|||+++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....|+|+|+|++.+++ +|.
T Consensus 96 ~~~i~y~~~~---~P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~~~~--~t~ 169 (209)
T cd08870 96 GTEIVRWVKK---FPFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKGDGQ--GSA 169 (209)
T ss_pred CcEEEEEEEE---CCCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecCCCC--ceE
Confidence 6899999987 889999999999998887778999999999999999999 9999999999999999952233 899
Q ss_pred EEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 353 VQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 353 VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
++|+++.||+|+||.|+ |.+.++.+..+|++|+++
T Consensus 170 ~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a 205 (209)
T cd08870 170 CEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENA 205 (209)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999986 999999999999999976
No 21
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=99.97 E-value=7.5e-30 Score=244.43 Aligned_cols=176 Identities=20% Similarity=0.295 Sum_probs=156.8
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeE
Q 010823 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
...||.....++|+.|+.+..+.+ ...+++|+...|+++|.+|+.-+.. .|..||.++.+.++||+||++++|
T Consensus 25 k~kgW~~~~~~~~vev~~kk~~d~----~~l~lwk~s~ei~~~p~~vl~rvL~---dR~~WD~~m~e~~~Ie~Ld~n~dI 97 (205)
T cd08907 25 RFKGWHSAPGPDNTELACKKVGDG----HPLRLWKVSTEVEAPPSVVLQRVLR---ERHLWDEDLLHSQVIEALENNTEV 97 (205)
T ss_pred ccCCceeecCCCCcEEEEEeCCCC----CceEEEEEEEEecCCCHHHHHHHhh---chhhhhHHHHhhhhheeecCCCEE
Confidence 457999999999999999866522 2478999999999977766554432 399999999999999999999999
Q ss_pred EEEEEecccCCCcCCCceEEEEEEEEEc-CCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRN-DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 277 VY~~~~~~~~P~~vs~RDFV~lR~wrr~-eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
.|+.++ .|.|+++||||++|.|+.. +.|.|+|+..||+|++.||.+| |||..+.+||+|+|.+ +| +|+|||
T Consensus 98 ~yY~~~---~~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g--~g--~s~lty 169 (205)
T cd08907 98 YHYVTD---SMAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCG--MG--RSRLTH 169 (205)
T ss_pred EEEEec---CCCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECC--CC--CeEEEE
Confidence 999887 5678999999999999865 6688999999999999999999 9999999999999997 34 899999
Q ss_pred EEeeecCCCccchhhhhhHHHHHHHHHHHhhh
Q 010823 356 LMQIDLKGWGVGYLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 356 i~~vDpkGwips~vn~~~~s~~~~~L~~la~~ 387 (500)
+.++|++|++|.|+|+..++++..-|.+|++.
T Consensus 170 i~rvD~rG~~P~Wynk~~g~~~a~~l~~ir~s 201 (205)
T cd08907 170 ICRADLRGRSPDWYNKVFGHLCAMEVARIRDS 201 (205)
T ss_pred EEEeCCCCCCcHHHHHhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999976
No 22
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.97 E-value=6.2e-29 Score=236.72 Aligned_cols=180 Identities=31% Similarity=0.562 Sum_probs=153.4
Q ss_pred cCCCcEEEEeeCCeEEEE-EecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCcee
Q 010823 197 SRKHWRLLQCQNGLRIFE-ELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA 275 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~-k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~td 275 (500)
...+|++..++++..++. +..+.+. ...+.+|++++|++++++++..+++.. . +||+.+.++++|++++++++
T Consensus 17 ~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~k~~~~v~~~~~~~~~~~~~~~--~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 17 DEDGWKLYKDKKNGDVYYKKVSPSDS---CPIKMFKAEGVVPASPEQVVEDLLDDR--E-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp TCTTCEEEEEETTTCEEEEEEECSSS---TSCEEEEEEEEESSCHHHHHHHHHCGG--G-HHSTTEEEEEEEEEEETTEE
T ss_pred CCCCCeEeEccCCCeEEEEEeCcccc---ccceEEEEEEEEcCChHHHHHHHHhhH--h-hcccchhhheeeeecCCCCe
Confidence 568999999655555544 3333221 147899999999999999999997732 3 99999999999999999999
Q ss_pred EEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCC-CCCeEEEEEceeEEEEEeCCCCCCCCceEEE
Q 010823 276 ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGP-QPGYVRAHVESGGFNISPLKPRNGRPRTQVQ 354 (500)
Q Consensus 276 IVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp-~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT 354 (500)
|+|..++.. +|+++++||||++|++++.++|.|+|+.+|++||.+|+ .+|+|||.+..+||+|+|+++ + .|+||
T Consensus 91 i~~~~~~~~-~~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~--~--~~~vt 165 (206)
T PF01852_consen 91 IVYFVMKSP-WPGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD--G--RTRVT 165 (206)
T ss_dssp EEEEEEE-C-TTTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT--C--EEEEE
T ss_pred EEEEEeccc-CCCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC--C--CceEE
Confidence 999987733 23499999999999999988999999999999999999 999999999999999999974 3 69999
Q ss_pred EEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 355 HLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 355 ~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
|+.++||+||+|.|+ |++..+.+..+++.+++.
T Consensus 166 ~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~ 199 (206)
T PF01852_consen 166 YVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKA 199 (206)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999876 899999999999999876
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.97 E-value=1.2e-28 Score=229.69 Aligned_cols=175 Identities=36% Similarity=0.625 Sum_probs=159.4
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEE
Q 010823 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (500)
Q Consensus 199 ~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY 278 (500)
.+|++..+++|++||.+..+. +....+|++++|++|+++|+++|.+.+ .|++||+.+.++++|+.+++++.|+|
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~-----~~~~~~k~~~~i~~~~~~v~~~l~d~~-~~~~w~~~~~~~~vl~~~~~~~~i~~ 88 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED-----SGLKLLKAEGVIPASPEQVFELLMDID-LRKKWDKNFEEFEVIEEIDEHTDIIY 88 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC-----CCceeEEEEEEECCCHHHHHHHHhCCc-hhhchhhcceEEEEEEEeCCCeEEEE
Confidence 489999999999999998773 236899999999999999999999854 79999999999999999999999999
Q ss_pred EEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEe
Q 010823 279 HRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQ 358 (500)
Q Consensus 279 ~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~ 358 (500)
..++ .||++++||||+++.+...++|.++++.+|++|+.+|+.+++|||.+..|||+|+|++ ++ .|+|||+++
T Consensus 89 ~~~~---~p~p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~--~~--~~~vt~~~~ 161 (193)
T cd00177 89 YKTK---PPWPVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD--PG--KTKVTYVLQ 161 (193)
T ss_pred EEee---CCCccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC--CC--CEEEEEEEe
Confidence 9987 6788999999999999988779999999999999999999999999999999999994 33 899999999
Q ss_pred eecCCCccchh-hhhhHHHHHHHHHHHhh
Q 010823 359 IDLKGWGVGYL-SMFQQHCLFQMLNSVAD 386 (500)
Q Consensus 359 vDpkGwips~v-n~~~~s~~~~~L~~la~ 386 (500)
+||+||+|.|+ ++++...+..+++.++.
T Consensus 162 ~D~~g~iP~~~~~~~~~~~~~~~~~~~~~ 190 (193)
T cd00177 162 VDPKGSIPKSLVNSAAKKQLASFLKDLRK 190 (193)
T ss_pred eCCCCCccHHHHHhhhhhccHHHHHHHHH
Confidence 99999998875 88888888888887764
No 24
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.96 E-value=1.8e-28 Score=236.86 Aligned_cols=173 Identities=20% Similarity=0.251 Sum_probs=151.7
Q ss_pred CCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEE
Q 010823 199 KHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILY 278 (500)
Q Consensus 199 ~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY 278 (500)
.+|......|++.+..+....+ ++.+.+|+++.|+++|++|+.+|.+ . |.+||..+.++++|+++|++++|+|
T Consensus 27 k~w~~~~~~~~~el~~~k~~~g----s~l~~~r~~~~i~a~~~~vl~~lld--~-~~~Wd~~~~e~~vIe~ld~~~~I~Y 99 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVSEG----PPLRLWRTTIEVPAAPEEILKRLLK--E-QHLWDVDLLDSKVIEILDSQTEIYQ 99 (204)
T ss_pred cCCcccCCCCcEEEEEeccCCC----CCcEEEEEEEEeCCCHHHHHHHHHh--h-HHHHHHHhhheEeeEecCCCceEEE
Confidence 4666666667777655433312 3579999999999999999999976 3 9999999999999999999999999
Q ss_pred EEEecccCCCcCCCceEEEEEEEEE-cCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEE
Q 010823 279 HRLQLDWFPMFVWPRDLCYVRYWRR-NDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLM 357 (500)
Q Consensus 279 ~~~~~~~~P~~vs~RDFV~lR~wrr-~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~ 357 (500)
+.++ +|||+++||||++|.|+. .++|.++|...|++|+.+|+. +|||....|||+|+|++. | +|+|||++
T Consensus 100 y~~~---~PwP~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~--g--~t~vtyi~ 170 (204)
T cd08908 100 YVQN---SMAPHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS--G--KSKLTYMC 170 (204)
T ss_pred EEcc---CCCCCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC--C--cEEEEEEE
Confidence 9987 789999999999999886 478899999999999999976 799999999999999973 3 89999999
Q ss_pred eeecCCCccchhhhhhHHHHHHHHHHHhhh
Q 010823 358 QIDLKGWGVGYLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 358 ~vDpkGwips~vn~~~~s~~~~~L~~la~~ 387 (500)
++||||++|.|+.+...+++..-|.+|++.
T Consensus 171 ~~DPgG~iP~W~~N~~g~~~~~~~~~~r~s 200 (204)
T cd08908 171 RIDLRGHMPEWYTKSFGHLCAAEVVKIRDS 200 (204)
T ss_pred EeCCCCCCcHHHHhhHHHHHHHHHHHHHhh
Confidence 999999999999888899999999999975
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.96 E-value=5e-28 Score=229.72 Aligned_cols=177 Identities=22% Similarity=0.399 Sum_probs=159.0
Q ss_pred cCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeE
Q 010823 197 SRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAI 276 (500)
Q Consensus 197 ~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdI 276 (500)
++.+|+++.+++|++||++..+++ ....+|++++|+++|++|++++.|++ .|++||+.+.++++|+++++++.+
T Consensus 15 ~~~~W~~~~~~~~v~v~~~~~~~~-----~~~~~k~~~~i~~s~e~v~~vi~d~e-~~~~w~~~~~~~~vie~~~~~~~i 88 (195)
T cd08876 15 PDGDWQLVKDKDGIKVYTRDVEGS-----PLKEFKAVAEVDASIEAFLALLRDTE-SYPQWMPNCKESRVLKRTDDNERS 88 (195)
T ss_pred CCCCCEEEecCCCeEEEEEECCCC-----CeEEEEEEEEEeCCHHHHHHHHhhhH-hHHHHHhhcceEEEeecCCCCcEE
Confidence 345699999999999999987632 25899999999999999999999986 689999999999999999998999
Q ss_pred EEEEEecccCCCcCCCceEEEEEEEEEcC-CCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEE
Q 010823 277 LYHRLQLDWFPMFVWPRDLCYVRYWRRND-DGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQH 355 (500)
Q Consensus 277 VY~~~~~~~~P~~vs~RDFV~lR~wrr~e-DGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~ 355 (500)
+|..++ +||++++||||+.+.++... +|.++|...|+.|+ +|++++|||+....|+|.|+|+++ + +|+|+|
T Consensus 89 ~~~~~~---~p~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~--~--~t~vt~ 160 (195)
T cd08876 89 VYTVID---LPWPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN--G--KTRVTY 160 (195)
T ss_pred EEEEEe---cccccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC--C--eEEEEE
Confidence 999887 67889999999988776654 78999999999888 899999999999999999999973 3 799999
Q ss_pred EEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 356 LMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 356 i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
++++||+||+|.++ +++++..+..+|.++++.
T Consensus 161 ~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~ 193 (195)
T cd08876 161 QAYADPGGSIPGWLANAFAKDAPYNTLENLRKQ 193 (195)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999985 889999999999999865
No 26
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.95 E-value=5.3e-27 Score=227.54 Aligned_cols=181 Identities=15% Similarity=0.268 Sum_probs=160.6
Q ss_pred ccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCc
Q 010823 194 QAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGH 273 (500)
Q Consensus 194 d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~ 273 (500)
+.-+.++|++..+++|++||.+..+++ ..+.+|++|+|++|++.++++|.+.+ .+++|++.+.++++|++++..
T Consensus 17 ~l~~~~~W~~~~~~~~i~v~~r~~~~~-----~~~~~k~e~~i~~~~~~~~~vl~d~~-~~~~W~p~~~~~~~l~~~~~~ 90 (215)
T cd08877 17 DLDESDGWTLQKESEGIRVYYKFEPDG-----SLLSLRMEGEIDGPLFNLLALLNEVE-LYKTWVPFCIRSKKVKQLGRA 90 (215)
T ss_pred cccCCCCcEEeccCCCeEEEEEeCCCC-----CEEEEEEEEEecCChhHeEEEEehhh-hHhhhcccceeeEEEeecCCc
Confidence 334467999999999999999988732 36899999999999999999999975 799999999999999999999
Q ss_pred eeEEEEEEecccCCCcCCCceEEEEEEE-EEc-CCCcEEEEEEecCCCC---------CCCCC-CeEEEEEceeEEEEEe
Q 010823 274 TAILYHRLQLDWFPMFVWPRDLCYVRYW-RRN-DDGSYVVLFRSREHEN---------CGPQP-GYVRAHVESGGFNISP 341 (500)
Q Consensus 274 tdIVY~~~~~~~~P~~vs~RDFV~lR~w-rr~-eDGsyvI~~~SV~hp~---------~Pp~~-g~VRa~i~~gGwvI~P 341 (500)
+.|+|+.++ +|||+++||+|+.... ... ++|.++|+..|+.|+. +|+.+ |+||+....|||+|+|
T Consensus 91 ~~v~y~~~~---~PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p 167 (215)
T cd08877 91 DKVCYLRVD---LPWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITP 167 (215)
T ss_pred eEEEEEEEe---CceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEE
Confidence 999999887 8999999999986332 333 7899999999999875 79998 9999999999999999
Q ss_pred CCCCCCCCceEEEEEEeeecCCC-ccchh-hhhhHHHHHHHHHHHhhh
Q 010823 342 LKPRNGRPRTQVQHLMQIDLKGW-GVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 342 l~~~~g~~~t~VT~i~~vDpkGw-ips~v-n~~~~s~~~~~L~~la~~ 387 (500)
+++ + +|.|+|++++||||+ +|.|+ |.+++.++..++.++++.
T Consensus 168 ~~~--~--~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~~~~~l~k~ 211 (215)
T cd08877 168 ISP--T--KCYLRFVANVDPKMSLVPKSLLNFVARKFAGLLFEKIQKA 211 (215)
T ss_pred cCC--C--CeEEEEEEEcCCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 973 3 899999999999999 99986 999999999999999865
No 27
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.91 E-value=3.4e-23 Score=199.43 Aligned_cols=183 Identities=19% Similarity=0.242 Sum_probs=160.4
Q ss_pred cccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhcccceeEEEEEec-C
Q 010823 195 AFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-G 272 (500)
Q Consensus 195 ~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~-a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iD-d 272 (500)
..+..+|+++.+++++.||....+.+ ....+|+.|+.+ +||+.|+++++|.+ .|++||.++.+.++|++.. .
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~~-----g~~~Yk~~~vfeDvtp~~~~Dv~~D~e-YRkkWD~~vi~~e~ie~d~~t 98 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPKT-----GLYEYKSRTVFEDVTPEIVRDVQWDDE-YRKKWDDMVIELETIEEDPVT 98 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccCC-----CCEEEEEEEEEcCCCHHHHHHHHhhhH-HHHHHHHHhhhheeeeecCCC
Confidence 44568999999999999999533322 268999999985 89999999999964 8999999999999999976 6
Q ss_pred ceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEE-eCCCCCCCCce
Q 010823 273 HTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNIS-PLKPRNGRPRT 351 (500)
Q Consensus 273 ~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~-Pl~~~~g~~~t 351 (500)
+++|+|+..+ +|.|+++||||++|.|...++..|+|+.+||.|+..|+.+++||+.+..+||+|+ |.... +++.|
T Consensus 99 g~~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~-~~~~~ 174 (219)
T KOG2761|consen 99 GTEVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSG-DEQGC 174 (219)
T ss_pred CceEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccC-CCCcc
Confidence 8999999987 8899999999999988887657899999999999999999999999999999999 66542 23589
Q ss_pred EEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 352 QVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 352 ~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
.++|....|++|-||.|+ +...+..+..+++.+..+
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~a 211 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEKA 211 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHHH
Confidence 999999999999999986 788889999999988765
No 28
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.56 E-value=7.6e-14 Score=137.01 Aligned_cols=132 Identities=20% Similarity=0.355 Sum_probs=112.2
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccc-hhcccceeEEEEEecCc--------eeEEEEEEecccCCCcCCCceEEE
Q 010823 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYE-WDCSFQYGSLVEEVDGH--------TAILYHRLQLDWFPMFVWPRDLCY 297 (500)
Q Consensus 227 ~~~~KavgvV~a~pe~VfevL~d~d~~R~e-WD~~~~~~~vVE~iDd~--------tdIVY~~~~~~~~P~~vs~RDFV~ 297 (500)
.-+-|+.|+|...|..+.++|||.+ ...+ ++..+..+++++.|+.. ..++|..++.. ..++.+|||++
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~~-kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~p--SpLVp~Re~~f 135 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDVN-KWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVP--SPLVPTREFYF 135 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhChh-hhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccC--cccccCCeEEE
Confidence 4567999999999999999999843 2222 44499999999999754 56788887642 25799999999
Q ss_pred EEEEEEcCCCcEEEEEEecCCC-CCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCc
Q 010823 298 VRYWRRNDDGSYVVLFRSREHE-NCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 365 (500)
Q Consensus 298 lR~wrr~eDGsyvI~~~SV~hp-~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwi 365 (500)
+||..+.+||+++|+-.|+++. ..|+.++++|++..++||+|+|.+ +| .|+|||+-|+|..-+.
T Consensus 136 LRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~--nG--~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 136 LRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMP--NG--YSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECC--CC--ceEEEEEEEEeccCCc
Confidence 9999999999999999999987 678889999999999999999998 44 8999999999987764
No 29
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.51 E-value=8.9e-14 Score=120.79 Aligned_cols=99 Identities=21% Similarity=0.403 Sum_probs=75.4
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCC---eEEeeCCcceecCeeeEEEEEEecC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGN---CRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~---~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
+||||.+.|.... ..| ++|||||+++.|+|||. |.+. .|.+.+.|+.+ +.|.+.-.....++..|.|.|..+
T Consensus 1 KeG~L~K~g~~~~-k~w-kkRwFvL~~~~L~Yyk~-~~d~-~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKHT-EGF-KKRWFTLDDRRLMYFKD-PLDA-FAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCCC-CCc-eeEEEEEeCCEEEEECC-CCCc-CcCcEEEeeccccceeEeccCCccccccccceEEEEeC-
Confidence 5899999997632 223 99999999999998875 4454 89888888754 356432111122344579999886
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHHHhh
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a~~~ 112 (500)
.+++.|+|.|.+|+..||+||+.||+.
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVLSR 102 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999754
No 30
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.47 E-value=2.5e-13 Score=115.57 Aligned_cols=94 Identities=18% Similarity=0.421 Sum_probs=73.2
Q ss_pred eeeeEEEEeeec-c-ccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 6 VYEGWMVRYGRR-K-IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 6 ~~eGwl~~~g~~-~-~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
|+||||++.+.. + ....| ++|||||+|+.|.|||.+.. ..|.+.+.| ++|.|+.. .+. +..|+|.|..+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~--~~~~~~I~L-~~~~v~~~-~~~---~k~~~F~I~~~- 71 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQD--EKAEGLIFL-SGFTIESA-KEV---KKKYAFKVCHP- 71 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCC--CccceEEEc-cCCEEEEc-hhc---CCceEEEECCC-
Confidence 589999998743 2 34466 99999999999999986543 378888888 55677642 122 35689999743
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+.+.+-|+|.|.+|+..||.||+.|
T Consensus 72 -~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 72 -VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred -CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.43 E-value=2.3e-12 Score=125.45 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=94.0
Q ss_pred Cccchhcccc--eeEEEEEecCce----eEEEEEEecccCCCcCCCceEEEEEE-EEEcC-CCcEEEEEEecCCCCCC-C
Q 010823 253 TRYEWDCSFQ--YGSLVEEVDGHT----AILYHRLQLDWFPMFVWPRDLCYVRY-WRRND-DGSYVVLFRSREHENCG-P 323 (500)
Q Consensus 253 ~R~eWD~~~~--~~~vVE~iDd~t----dIVY~~~~~~~~P~~vs~RDFV~lR~-wrr~e-DGsyvI~~~SV~hp~~P-p 323 (500)
.-.+|.+.+. ++++|+..++.. .|+|..++ +|||+++|||+.+.. ....+ ...++++..++.|+.+| +
T Consensus 64 ~E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~ 140 (208)
T cd08864 64 YEKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESL 140 (208)
T ss_pred hhhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCcc
Confidence 3458999999 899999988665 78888877 899999999999987 33333 15678899999999999 9
Q ss_pred CCCeEEEEEcee-EEEEEeCCCCCCCCceEEEEEE--eeecCCCccchh-hhhhHHHHH
Q 010823 324 QPGYVRAHVESG-GFNISPLKPRNGRPRTQVQHLM--QIDLKGWGVGYL-SMFQQHCLF 378 (500)
Q Consensus 324 ~~g~VRa~i~~g-GwvI~Pl~~~~g~~~t~VT~i~--~vDpkGwips~v-n~~~~s~~~ 378 (500)
.++||||.-..+ .|.+.|+.. ++ .+.|+|++ +.||+|+||.|+ |++++....
T Consensus 141 ~~~~Vr~~y~SgE~~~~~p~~~-~~--~~~vew~maT~sDpGG~IP~wl~n~~~p~aI~ 196 (208)
T cd08864 141 YENAVLGRYASVEKISYLPDAD-GK--SNKVEWIMATRSDAGGNIPRWLTKLTIPKAIA 196 (208)
T ss_pred CCCcEEEEEEEEEEEEEcCccC-CC--cCCEEEEEEEeeCCCCcCcHHHHhccCchHHH
Confidence 999999997666 666667642 22 45566666 999999999997 777665443
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=1e-12 Score=109.05 Aligned_cols=91 Identities=24% Similarity=0.501 Sum_probs=71.6
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCc
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~ 86 (500)
|||||++++... ..| ++|||||+++.|.||+.+......|.+.+.|.. |+|+.. . ..-++|+|..+ ++
T Consensus 1 ~~G~L~k~~~~~--~~W-~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~-~~~~~~---~---~~~~~F~i~~~--~~ 68 (91)
T cd01246 1 VEGWLLKWTNYL--KGW-QKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSG-AVISED---D---SDDKCFTIDTG--GD 68 (91)
T ss_pred CeEEEEEecccC--CCc-eeeEEEEECCEEEEEecCccCCCCceEEEEece-EEEEEC---C---CCCcEEEEEcC--CC
Confidence 799999987654 334 999999999999999987653247889999955 555431 1 12578999864 34
Q ss_pred eeEEEeecCHHHHHHHHHHHHHH
Q 010823 87 HRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 87 ~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+.+.|.|.|.+|+..||.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 89999999999999999999876
No 33
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.38 E-value=5.7e-13 Score=139.82 Aligned_cols=184 Identities=15% Similarity=0.294 Sum_probs=140.7
Q ss_pred cccccCCCcEEEEeeCCeEEEEEecccCCCCccccceEEEEEEec-ccHHHHHHHHhcCCCCccchhcccceeEEEEEec
Q 010823 193 NQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVE-ASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD 271 (500)
Q Consensus 193 ~d~~~~~~Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~-a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iD 271 (500)
.++...+.|+++.+...+++|++..+.++. ..-..|+.-.|. .++.++...+.+.+ .|..|+.++..+.|||+|.
T Consensus 397 ~~~g~d~nwqlFaeegemkmy~re~eeng~---~~Dplka~hav~gvta~e~chyf~~~~-~rndwettle~~~vve~is 472 (611)
T KOG1739|consen 397 QDVGGDANWQLFAEEGEMKMYRREVEENGI---VLDPLKATHAVKGVTAHEVCHYFWNVD-VRNDWETTLENFHVVETIS 472 (611)
T ss_pred ccccccchhhhhcccCCccccceeeccCCc---ccCccccchhhcchhHHHHHHHHcChh-hhcchhhhhhhceeeeeec
Confidence 344455679999999999999998764322 344556654444 68999999999875 7999999999999999999
Q ss_pred CceeEEEEEEecccCCCcCCCceEEEEEEEEEc----CC--CcEEEEEEecCCCCCCCCCCeEEEEEceeEE---EE---
Q 010823 272 GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN----DD--GSYVVLFRSREHENCGPQPGYVRAHVESGGF---NI--- 339 (500)
Q Consensus 272 d~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~----eD--GsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGw---vI--- 339 (500)
+++-|+|++.+ .+ ||.++||.+++.++|+. ++ ..|++|.+||+|.+.|....+||+.+....- .+
T Consensus 473 ~d~~~~~qthk-rv--wpasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p 549 (611)
T KOG1739|consen 473 DDAIIIYQTHK-RV--WPASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPP 549 (611)
T ss_pred CCeEEEEeccc-cc--CCCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCc
Confidence 99999988854 44 89999999999888875 23 4799999999999999999999998765321 11
Q ss_pred ---EeCCCCCCCCceEEEEEEeeecCCCccch-hhhhhHHHHHHHHHHHh
Q 010823 340 ---SPLKPRNGRPRTQVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 340 ---~Pl~~~~g~~~t~VT~i~~vDpkGwips~-vn~~~~s~~~~~L~~la 385 (500)
+|+..+ .-.|++||+.+++|+||.|.- +-...+.-...||++.-
T Consensus 550 ~~~q~l~rd--d~~ckityvs~vnpggwapasalravykreypkflkrft 597 (611)
T KOG1739|consen 550 EGNQELSRD--DILCKITYVSNVNPGGWAPASALRAVYKREYPKFLKRFT 597 (611)
T ss_pred ccCCccccc--ceeEEEEEEeeeCCCCcccHHHHHHHHHhhhHHHHHHHH
Confidence 222222 247999999999999999754 44555554555555544
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.33 E-value=1.2e-11 Score=102.78 Aligned_cols=99 Identities=20% Similarity=0.396 Sum_probs=80.1
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCCcce--ecCeeeEEEEEEec
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKT--HHGHMVYVLSVYNK 82 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g~~~--~~~~~~yv~~i~~~ 82 (500)
.++|||++.+...-+. ++|||||.++.|.|||...... ..|...+-+ .+|.|.+..... .....-+.|.|.++
T Consensus 2 ~~~G~L~~~~~~~~~w---k~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l-~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKW---KKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPL-DDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEEEESSSSSE---EEEEEEEETTEEEEESSTTTTTESSESEEEEG-TTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred EEEEEEEEECCCCCCe---EEEEEEEECCEEEEEecCccccceeeeEEEEe-cCceEEEcCccccccccCCCcEEEEEeC
Confidence 5899999988434344 9999999999999999877422 689899999 666888754331 23467889999988
Q ss_pred CCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 83 KEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 83 ~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
.. +.+.|.|.|.+|+..|++||+.|+
T Consensus 78 ~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 NG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 65 899999999999999999999995
No 35
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.33 E-value=9.9e-12 Score=111.16 Aligned_cols=98 Identities=19% Similarity=0.423 Sum_probs=75.9
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC-
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE- 84 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~- 84 (500)
+++|||++.|... ..| ++|||||+++.|.|||. +.+. .|.+++.|. +|.|+.--. ...-+.|.|+.+.+
T Consensus 1 ~k~G~L~K~~~~~--~~W-kkRwfvL~~~~L~yyk~-~~~~-~~~g~I~L~-~~~v~~~~~----~~~~~~F~i~~~~~~ 70 (125)
T cd01252 1 DREGWLLKQGGRV--KTW-KRRWFILTDNCLYYFEY-TTDK-EPRGIIPLE-NVSIREVED----PSKPFCFELFSPSDK 70 (125)
T ss_pred CcEEEEEEeCCCC--CCe-EeEEEEEECCEEEEEcC-CCCC-CceEEEECC-CcEEEEccc----CCCCeeEEEECCccc
Confidence 4799999988654 334 99999999999998874 3444 899999995 777775311 12457888888764
Q ss_pred -----------------CceeEEEeecCHHHHHHHHHHHHHHHhhh
Q 010823 85 -----------------KYHRITMAAFNIQEALIWKEKIELVIDQH 113 (500)
Q Consensus 85 -----------------~~~~~~~~a~~~~e~~~W~~a~~~a~~~~ 113 (500)
..+.+.|.|.|.+|+..||.||+.++.+.
T Consensus 71 ~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 71 QQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred cccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 23678899999999999999999997544
No 36
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=7.4e-12 Score=107.17 Aligned_cols=91 Identities=16% Similarity=0.253 Sum_probs=70.2
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEec--ceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
..|||.+.|.+.+...| ++|||||++ ..|+|||.+. +. .|++++-+.. +.+.....+ .-+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~-d~-~p~G~I~L~~-~~~~~~~~~-----~~~~F~i~t--- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQ-DA-KPLGRVDLSG-AAFTYDPRE-----EKGRFEIHS--- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCC-cc-cccceEECCc-cEEEcCCCC-----CCCEEEEEc---
Confidence 36999999987655566 999999984 5899887544 44 8999999955 444432221 135788865
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.++.+.|.|.|.+|+..||+||+.+
T Consensus 69 ~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4789999999999999999999987
No 37
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.31 E-value=1.1e-11 Score=106.96 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=74.5
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeC-CcceecCeeeEEEEEEecC
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~-g~~~~~~~~~yv~~i~~~~ 83 (500)
+.++|||.+.|...- .| ++|||||+++.|.|||.+.. ..|++.+-|. +|.|+.. +.+...| ..++|.|..
T Consensus 2 v~k~G~L~Kkg~~~k--~W-kkRwfvL~~~~L~yyk~~~~--~~~~~~I~L~-~~~v~~~~~~~~~~~-~~~~F~I~t-- 72 (100)
T cd01233 2 VSKKGYLNFPEETNS--GW-TRRFVVVRRPYLHIYRSDKD--PVERGVINLS-TARVEHSEDQAAMVK-GPNTFAVCT-- 72 (100)
T ss_pred cceeEEEEeeCCCCC--Cc-EEEEEEEECCEEEEEccCCC--ccEeeEEEec-ccEEEEccchhhhcC-CCcEEEEEC--
Confidence 458999999988753 34 99999999999999987654 4899999995 8877632 1111111 357899964
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.++.+.|.|.|.+|+..||+||..+
T Consensus 73 -~~rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 73 -KHRGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred -CCCEEEEEcCCHHHHHHHHHHhhhh
Confidence 4799999999999999999999876
No 38
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.28 E-value=2.8e-11 Score=105.18 Aligned_cols=90 Identities=22% Similarity=0.432 Sum_probs=72.2
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecc------eeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeE
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR------LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 75 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~------~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~y 75 (500)
+.++|||.+. -+| |+|||||++. .|.|||.+..-+ ..|.|+|.++.|..|..+- +..| =|
T Consensus 2 v~k~GyL~K~------K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~-d~k~---~~ 70 (101)
T cd01257 2 VRKSGYLRKQ------KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRA-DAKH---RH 70 (101)
T ss_pred ccEEEEEeEe------cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeecc-cccc---Ce
Confidence 5689999995 344 8999999999 899999887532 4799999997777776532 1222 28
Q ss_pred EEEEEecCCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 76 v~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
+|+|+.+ .+++-|+|.|.+|++.|++||.+
T Consensus 71 ~f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 9999884 58999999999999999999964
No 39
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.27 E-value=3.3e-11 Score=102.56 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=68.1
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCc
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~ 86 (500)
++|||++.|.---|. ++|||||++..|.|||.++.....|.+++-+.. |.|....- .-..|.|... .+
T Consensus 1 ~~G~L~K~~~~~k~W---k~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~-~~i~~~~~------~~~~F~i~~~--~~ 68 (91)
T cd01247 1 TNGVLSKWTNYINGW---QDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKK-AIIAAHEF------DENRFDISVN--EN 68 (91)
T ss_pred CceEEEEeccccCCC---ceEEEEEECCEEEEEecCccCcCCCcEEEECcc-cEEEcCCC------CCCEEEEEeC--CC
Confidence 589999988654455 999999999999999987754345777887744 44443211 1246777533 35
Q ss_pred eeEEEeecCHHHHHHHHHHHHH
Q 010823 87 HRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 87 ~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
+++.|.|.|.+|...|++||++
T Consensus 69 r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 69 VVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred eEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999999999999999985
No 40
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.26 E-value=3.5e-11 Score=102.66 Aligned_cols=96 Identities=25% Similarity=0.326 Sum_probs=71.6
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecc--eeehhccCCCCCCccceeEEecCCeEEeeCCcc---eecCeeeEEEEEEe
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESR--LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLK---THHGHMVYVLSVYN 81 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~---~~~~~~~yv~~i~~ 81 (500)
++|||++.|...- .| ++|||||.++ .|.|||.. .+. .|.+++-|...+.|...... .-|...-+.|.|..
T Consensus 1 ~~G~L~K~g~~~k--~W-kkRwFvL~~~~~~L~Yy~~~-~~~-~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t 75 (101)
T cd01235 1 CEGYLYKRGALLK--GW-KPRWFVLDPDKHQLRYYDDF-EDT-AEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKT 75 (101)
T ss_pred CeEEEEEcCCCCC--Cc-cceEEEEECCCCEEEEecCC-CCC-ccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEEe
Confidence 4899999997544 44 9999999954 89988755 344 89899999887778753211 11222345677743
Q ss_pred cCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 82 KKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 82 ~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
+.+.+-|.|.|.+|+..|++||+.+|
T Consensus 76 ---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 76 ---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 57899999999999999999999874
No 41
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.25 E-value=3.7e-11 Score=100.26 Aligned_cols=94 Identities=17% Similarity=0.338 Sum_probs=71.0
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCc
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~ 86 (500)
|+|||++.+.... ..| ++|||||+++.|.||+..+.....|..++.+ ..|.|....... +.-+.|.|..+.
T Consensus 1 k~G~L~kk~~~~~-~~W-~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l-~~~~v~~~~~~~---~~~~~f~i~~~~--- 71 (94)
T cd01250 1 KQGYLYKRSSKSN-KEW-KKRWFVLKNGQLTYHHRLKDYDNAHVKEIDL-RRCTVRHNGKQP---DRRFCFEVISPT--- 71 (94)
T ss_pred CcceEEEECCCcC-CCc-eEEEEEEeCCeEEEEcCCcccccccceEEec-cceEEecCcccc---CCceEEEEEcCC---
Confidence 6999999775532 234 9999999999999998877533467677666 556776432211 246899998653
Q ss_pred eeEEEeecCHHHHHHHHHHHHHH
Q 010823 87 HRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 87 ~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+.+.|.|.|.+|+..|+.||+.|
T Consensus 72 ~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 72 KTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred cEEEEECCCHHHHHHHHHHHhcC
Confidence 89999999999999999999864
No 42
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.24 E-value=3.2e-11 Score=105.28 Aligned_cols=99 Identities=16% Similarity=0.177 Sum_probs=76.2
Q ss_pred eeeEEEEee--eccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCccee---cCeeeEEEEEEe
Q 010823 7 YEGWMVRYG--RRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYN 81 (500)
Q Consensus 7 ~eGwl~~~g--~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~---~~~~~yv~~i~~ 81 (500)
.||||++.+ +.++|+.-.++|||||++..|.|||.++.....|.+++-|.....|+.-..+.. +.+.-|.|.|..
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t 81 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVH 81 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEEe
Confidence 589999996 444666333999999999999999987754347889999977767775433332 113458899977
Q ss_pred cCCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 82 KKEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 82 ~~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
. .+.+-|.|.|.+|...||+||++
T Consensus 82 ~---~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 82 D---EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred C---CCeEEEEcCCHHHHHHHHHHHHh
Confidence 4 57888999999999999999986
No 43
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.19 E-value=7.6e-11 Score=102.98 Aligned_cols=93 Identities=18% Similarity=0.321 Sum_probs=72.3
Q ss_pred eeeEEEEeeecc------c-cceeeeeeEEEEe-cceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEE
Q 010823 7 YEGWMVRYGRRK------I-GRSFIHMRYFVLE-SRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 7 ~eGwl~~~g~~~------~-g~~~~~~Ryfvl~-g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~ 78 (500)
+.|||++.+..+ . -.+| |+|||||+ +.+|+||++++.+. .|.+++-|..++.|.+ |.+. .+ .-+.|+
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~W-krRWFvL~~~~~L~y~~d~~~~~-~p~G~IdL~~~~~V~~-~~~~-~~-~~~~f~ 75 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRW-QRRWFILYDHGLLTYALDEMPTT-LPQGTIDMNQCTDVVD-AEAR-TG-QKFSIC 75 (104)
T ss_pred CcceeEEcCCCCcccccceeeccc-cceEEEEeCCCEEEEeeCCCCCc-ccceEEEccceEEEee-cccc-cC-CccEEE
Confidence 579999988774 2 2344 99999997 68999888776544 8999999988777774 2222 12 257888
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHH
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~ 107 (500)
|-.+ .+++-|.|.|.+|++.||++|.
T Consensus 76 I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 76 ILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 8655 7999999999999999999986
No 44
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.19 E-value=1.1e-10 Score=102.04 Aligned_cols=95 Identities=24% Similarity=0.355 Sum_probs=70.9
Q ss_pred eeEEEEeeeccc-c-ceeeeeeEEEEecce-------eehhccCCCCCCccceeEEecCCeEEeeCCccee--cCeeeEE
Q 010823 8 EGWMVRYGRRKI-G-RSFIHMRYFVLESRL-------LAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH--HGHMVYV 76 (500)
Q Consensus 8 eGwl~~~g~~~~-g-~~~~~~Ryfvl~g~~-------l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~--~~~~~yv 76 (500)
||||.+.|.... + ..| ++|||||+++- |.|||..+ + ..|.+++-|.. |.+.+.|.... +...-|.
T Consensus 2 eGwL~K~~~~~~~~~~~W-krRwFvL~~~~l~~~~~~L~Yyk~~~-~-~k~~g~I~L~~-~~~v~~~~~~~~~~~~~~~~ 77 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKW-VRRYFVLHCGDRERNLFALEYYKTSR-K-FKLEFVIDLES-CSQVDPGLLCTAGNCIFGYG 77 (108)
T ss_pred ceeeeeCCccccccccCc-EEEEEEEeccccCCCcceEEEECCCC-C-CccceEEECCc-cEEEcccccccccCcccceE
Confidence 899999887543 2 244 99999999875 58898654 3 48999999955 65555443221 1234478
Q ss_pred EEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 77 ~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
|.|.- ..+.+-|+|.|.+|+..||.||.+.
T Consensus 78 f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 78 FDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 88883 4789999999999999999999764
No 45
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.17 E-value=3.4e-10 Score=92.24 Aligned_cols=99 Identities=19% Similarity=0.314 Sum_probs=78.8
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
.++|||++.... +.+-.++|||+|.++.|.||+..+... ..|.+.+.|++. .|........ ...-+.|.|.++..
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~-~~~~~~f~l~~~~~ 77 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGI-TVREAPDPDS-AKKPHCFEIKTADR 77 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcC-EEEeCCCCcc-CCCceEEEEEecCC
Confidence 589999998775 334449999999999999999888754 588899999554 7776544322 23458889987644
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
..+.|.|.|.+|+..|+.+|+.++
T Consensus 78 --~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 --RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred --ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 799999999999999999999884
No 46
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.16 E-value=2.1e-10 Score=99.74 Aligned_cols=97 Identities=18% Similarity=0.265 Sum_probs=72.9
Q ss_pred eeeEEEEeeec-cccceeeeeeEEEEecceeehhccCCCCCCccc-eeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 7 YEGWMVRYGRR-KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPI-KTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 7 ~eGwl~~~g~~-~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi-~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
.||||-+.|.+ +.=-+| ++|||||+|+.|.|||+++.. .|+ +++.+..+..|..-....-.-.-.+.|+|..+
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~--~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp-- 76 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKD--DPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTA-- 76 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCcc--CCCCceEEcccceEEeeccccccccccCcEEEEEcC--
Confidence 58999987774 233345 999999999999999877653 455 68888666666543222211123589999765
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
++++-|.|.|.+|++.||++|..|
T Consensus 77 -~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 77 -DKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred -CceEEEEeCCHHHHHHHHHHHHhh
Confidence 699999999999999999999988
No 47
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.15 E-value=1.8e-10 Score=99.83 Aligned_cols=94 Identities=23% Similarity=0.376 Sum_probs=66.8
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEe-cceeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEE
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 80 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~ 80 (500)
+.+||||.+.|...-.. ++|||||+ +..|.|||.+|.+. ..|+....|.+ |.|... + ....+.|.|-
T Consensus 1 v~k~G~L~K~g~~~~~W---k~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~-~~~~~~--~---~~~~~~F~i~ 71 (102)
T cd01241 1 VVKEGWLHKRGEYIKTW---RPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAE-CQLMKT--E---RPRPNTFIIR 71 (102)
T ss_pred CcEEEEEEeecCCCCCC---eeEEEEEeCCCeEEEEecCCCccCccccccCCeEEee-eeeeec--c---CCCcceEEEE
Confidence 35899999999865555 99999999 66777799998655 45777777744 555321 1 1233677776
Q ss_pred ecC---CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 81 NKK---EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 81 ~~~---~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
... ...+ +|.|.|.||.+.||+||+.+
T Consensus 72 ~~~~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQWTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred eccCCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 221 1123 66799999999999999876
No 48
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.03 E-value=6.2e-10 Score=96.26 Aligned_cols=89 Identities=11% Similarity=0.195 Sum_probs=67.7
Q ss_pred eeEEEEeeeccccceeeeeeEEEEec----ceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCee---eEEEEEE
Q 010823 8 EGWMVRYGRRKIGRSFIHMRYFVLES----RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHM---VYVLSVY 80 (500)
Q Consensus 8 eGwl~~~g~~~~g~~~~~~Ryfvl~g----~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~---~yv~~i~ 80 (500)
-|||.+.|.+ ..-.| ++|||||.+ +.|+||+..+. ..|++.+.+ .++.|.+ +|... .|.|.|+
T Consensus 2 ~G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~--~~p~gli~l-~~~~V~~-----v~ds~~~r~~cFel~ 71 (98)
T cd01245 2 KGNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKK--TKPIGLIDL-SDAYLYP-----VHDSLFGRPNCFQIV 71 (98)
T ss_pred CCccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCC--CCccceeec-cccEEEE-----ccccccCCCeEEEEe
Confidence 4999998864 23344 999999998 99997775554 489874444 8888774 45533 4999999
Q ss_pred ecCCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 81 NKKEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 81 ~~~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
++..| ..+.|+|.+ +|++.||++|+.
T Consensus 72 ~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 72 ERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred cCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 99664 677888888 999999999975
No 49
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.96 E-value=2.9e-09 Score=94.02 Aligned_cols=94 Identities=18% Similarity=0.405 Sum_probs=54.4
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEe-cceeehhccCCCCC-------Ccccee---EEecC---CeEEee----CCcce
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLE-SRLLAYYKKKPQDN-------QVPIKT---LLIDG---NCRVED----RGLKT 68 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~-g~~l~~yk~~p~~~-------~~pi~~---~~i~~---~~~V~~----~g~~~ 68 (500)
+|||||+.+.. +|..| ++|||||+ ++.|.|||. |.+. +.+.+. +.++. ...+.. +-.+.
T Consensus 1 k~G~l~K~~~~-~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999997766 67777 99999999 999999997 2221 112221 11111 111111 22334
Q ss_pred ecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 69 HHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 69 ~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+|.+++++ ...++++-|-|.+.+|...||+||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 44444444 356899999999999999999999987
No 50
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.96 E-value=3.1e-09 Score=95.03 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=76.9
Q ss_pred eeeEEEEeeecccc-ceee--------------eeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCccee--
Q 010823 7 YEGWMVRYGRRKIG-RSFI--------------HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-- 69 (500)
Q Consensus 7 ~eGwl~~~g~~~~g-~~~~--------------~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~-- 69 (500)
+||||++.+.-+.- .--| ++|||||++..|.||+ +|.+. .|...+++|.+..|+..+.+.+
T Consensus 1 keG~i~kr~g~~~~~~~~~~~~~~~~~~~~~~w~kRWFvlr~s~L~Y~~-~~~~~-~~~~vil~D~~f~v~~~~~~~~~~ 78 (121)
T cd01254 1 KEGYIMKRSGGKRSGSDDCSFGCCCFCRMCDRWQKRWFIVKESFLAYMD-DPSSA-QILDVILFDVDFKVNGGGKEDISL 78 (121)
T ss_pred CCceEEeCCCCCcCCcccccccccCCcccccCCcceeEEEeCCEEEEEc-CCCCC-ceeeEEEEcCCccEEeCCcccccc
Confidence 48999987655442 1112 8999999999999776 55543 8999999999999997766411
Q ss_pred ------cCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 70 ------HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 70 ------~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+...-|.|+|-|. +|+++|.|.|.+++..|++||+.|
T Consensus 79 ~~~~~~~~~~~~~~~i~t~---~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 79 AVELKDITGLRHGLKITNS---NRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred cccccccCCCceEEEEEcC---CcEEEEEeCCHHHHHHHHHHHHhC
Confidence 1134589999665 899999999999999999999876
No 51
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.93 E-value=8e-09 Score=89.40 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.4
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEEec
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNK 82 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~ 82 (500)
.+||||.+++...-.. +.|||+|-...|-|+|.+|... -.+...+-+ .++.|++. .+....+.|.|..+
T Consensus 3 ikeG~L~K~~~~~~~~---k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l-~~~~v~~~----~~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTTEKT---EERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDV-SGMQVCEG----DNLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCCCCc---eeEEEEEeCCEEEEEEcccccCCCcEEEEEEEec-ccEEEEeC----CCCCcCceEEEecC
Confidence 4799999998776555 9999999888888898765322 233344555 66888763 23456788999665
Q ss_pred CCCceeEEEeecCHHHHHHHHHHHHHHHhh
Q 010823 83 KEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (500)
Q Consensus 83 ~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~ 112 (500)
. +.+.+.|.|.+|...||.||+.||++
T Consensus 75 ~---rsf~l~A~s~eEk~~W~~ai~~~i~~ 101 (101)
T cd01219 75 Q---RCLELQARTQKEKNDWVQAIFSIIDE 101 (101)
T ss_pred C---cEEEEEcCCHHHHHHHHHHHHHHhhC
Confidence 3 89999999999999999999999864
No 52
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.90 E-value=2e-08 Score=89.83 Aligned_cols=132 Identities=12% Similarity=0.085 Sum_probs=100.4
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEE
Q 010823 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (500)
Q Consensus 231 KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyv 310 (500)
+....|++|+++|+++|.|++ ..++|.+.+.++++++.-+.. ..++..+. ++...|+|+....+. .+..
T Consensus 2 ~~s~~i~ap~~~v~~~i~D~~-~~~~~~p~~~~~~vl~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~-- 70 (138)
T cd07813 2 SKSRLVPYSAEQMFDLVADVE-RYPEFLPWCTASRVLERDEDE-LEAELTVG-----FGGIRESFTSRVTLV--PPES-- 70 (138)
T ss_pred eEEEEcCCCHHHHHHHHHHHH-hhhhhcCCccccEEEEcCCCE-EEEEEEEe-----eccccEEEEEEEEec--CCCE--
Confidence 445689999999999999986 588999999999999987644 34455543 334588888654443 2333
Q ss_pred EEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 311 I~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
|.+.++.. +.....|.|.++|+++ + +|+|+|.++.+++|.+|.++ +.+....+..+|+.+++.
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~--~--~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGE--N--ACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCC--C--CEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555532 2234578999999973 3 79999999999999998885 889999999999988765
No 53
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=3.1e-09 Score=105.93 Aligned_cols=99 Identities=19% Similarity=0.384 Sum_probs=78.0
Q ss_pred CceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 4 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
.++.||||++.|.|+. .+| .+|||||..|+|+ |++--.|+ +| |.+|-.+|.-|.. .---+..|-|.||++.
T Consensus 259 npdREGWLlKlgg~rv-ktW-KrRWFiLtdNCLY-YFe~tTDK-EP-rGIIpLeNlsir~----VedP~kP~cfEly~ps 329 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRV-KTW-KRRWFILTDNCLY-YFEYTTDK-EP-RGIIPLENLSIRE----VEDPKKPNCFELYIPS 329 (395)
T ss_pred CccccceeeeecCCcc-cch-hheeEEeecceee-eeeeccCC-CC-Ccceeccccceee----ccCCCCCCeEEEecCC
Confidence 3678999999998743 455 9999999999998 66677777 88 5555557776643 2233678999999998
Q ss_pred CCcee-------------------EEEeecCHHHHHHHHHHHHHHHh
Q 010823 84 EKYHR-------------------ITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 84 ~~~~~-------------------~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
++..+ |+|.|.|+||...||++++.+|.
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 85543 67899999999999999999975
No 54
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.89 E-value=1.3e-08 Score=82.76 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=73.1
Q ss_pred eeeEEEEeeeccc-cceeeeeeEEEEecceeehhccCCCCCCccc-eeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 7 YEGWMVRYGRRKI-GRSFIHMRYFVLESRLLAYYKKKPQDNQVPI-KTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 7 ~eGwl~~~g~~~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi-~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
.+|||++++.... +...-++|||+|.++.|.+|+.++... +. ....+ ..++|....... +.-++|.|.+...
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~--~~~~~~~l-~~~~v~~~~~~~---~~~~~F~i~~~~~ 74 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE--IKPGSIPL-SEISVEEDPDGS---DDPNCFAIVTKDR 74 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc--CCCCEEEc-cceEEEECCCCC---CCCceEEEECCCC
Confidence 4799999988764 222239999999999999998776543 22 34555 445576643322 3468999998865
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+.+.+.|.|.|.+|+..||+||++|
T Consensus 75 ~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 75 GRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 6899999999999999999999875
No 55
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.85 E-value=1.1e-08 Score=88.32 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=65.7
Q ss_pred eeeEEEEeee------ccccceeeeeeEEEEecceeehhccCCCCCCccce--eEEecCCeEEeeCCcceecCeeeEEEE
Q 010823 7 YEGWMVRYGR------RKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIK--TLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 7 ~eGwl~~~g~------~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~--~~~i~~~~~V~~~g~~~~~~~~~yv~~ 78 (500)
|||+|+++-. +.-...| ++|||||+|+.|.+||.+....+.+.+ .+-| .+|.|+.- .-..+.-++|+
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l-~~~~i~~~---~~~~k~~~~F~ 75 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDL-TGAQCEVA---SDYTKKKHVFR 75 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccccCCCCCCcEec-cCCEEEec---CCcccCceEEE
Confidence 6899996533 3334455 999999999999999966533222212 2334 25665531 11113348999
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
|-.+ ..+.+.|.|.|.+|+..|+.||+.|
T Consensus 76 l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 76 LRLP--DGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred EEec--CCCEEEEECCCHHHHHHHHHHHhcC
Confidence 9865 5689999999999999999999753
No 56
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.84 E-value=1.4e-08 Score=87.80 Aligned_cols=83 Identities=18% Similarity=0.145 Sum_probs=66.1
Q ss_pred cccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHH
Q 010823 18 KIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (500)
Q Consensus 18 ~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~ 97 (500)
+.+.+| ++|||||.++-|.|||... ..|+++|-|..-.-|+..+-.... .-|.|.|..+ .+.+-|-|.|.+
T Consensus 16 ~~~~n~-KkRwF~Lt~~~L~Y~k~~~---~~~~g~I~L~~i~~ve~v~~~~~~--~~~~fqivt~---~r~~yi~a~s~~ 86 (98)
T cd01244 16 KKVLHF-KKRYFQLTTTHLSWAKDVQ---CKKSALIKLAAIKGTEPLSDKSFV--NVDIITIVCE---DDTMQLQFEAPV 86 (98)
T ss_pred ccCcCC-ceeEEEECCCEEEEECCCC---CceeeeEEccceEEEEEcCCcccC--CCceEEEEeC---CCeEEEECCCHH
Confidence 556677 9999999999999998543 478899999665666665554432 2489999876 579999999999
Q ss_pred HHHHHHHHHHHH
Q 010823 98 EALIWKEKIELV 109 (500)
Q Consensus 98 e~~~W~~a~~~a 109 (500)
|+..||+||+.+
T Consensus 87 E~~~Wi~al~k~ 98 (98)
T cd01244 87 EATDWLNALEKQ 98 (98)
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 57
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.82 E-value=2.1e-08 Score=87.59 Aligned_cols=82 Identities=18% Similarity=0.333 Sum_probs=67.7
Q ss_pred eeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC-CCceeEEEeecCHHHHHHH
Q 010823 24 IHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK-EKYHRITMAAFNIQEALIW 102 (500)
Q Consensus 24 ~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~-~~~~~~~~~a~~~~e~~~W 102 (500)
.++|||+|+|+.|+|||.++..+..|+..+-+ .+|.|... ..+-.+ -|.+.+-.+. ++.+.+-|.|.|-++-++|
T Consensus 20 ~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl-~gcev~~d--v~~~~~-kf~I~l~~ps~~~~r~y~l~cdsEeqya~W 95 (106)
T cd01237 20 YKQYWFTFRDTSISYYKSKEDSNGAPIGQLNL-KGCEVTPD--VNVAQQ-KFHIKLLIPTAEGMNEVWLRCDNEKQYAKW 95 (106)
T ss_pred heeEEEEEeCCEEEEEccchhcCCCCeEEEec-CceEEccc--cccccc-ceEEEEecCCccCCeEEEEECCCHHHHHHH
Confidence 39999999999999999988777789888888 77777742 111122 3999998875 6678999999999999999
Q ss_pred HHHHHHH
Q 010823 103 KEKIELV 109 (500)
Q Consensus 103 ~~a~~~a 109 (500)
|.|++.|
T Consensus 96 maa~rla 102 (106)
T cd01237 96 MAACRLA 102 (106)
T ss_pred HHHHHHh
Confidence 9999999
No 58
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.80 E-value=2.3e-08 Score=89.80 Aligned_cols=103 Identities=20% Similarity=0.314 Sum_probs=68.8
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC--CccceeEEecCCeEEee--CCcceecCeeeEEEEEE
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVED--RGLKTHHGHMVYVLSVY 80 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~pi~~~~i~~~~~V~~--~g~~~~~~~~~yv~~i~ 80 (500)
++|.|||......+ |..--++|||||+|++|.||| +|.+. ..|++++-|..++.+.- --|+.-...--|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 47899998765444 444449999999999999665 56553 68999999966544221 12223333333445444
Q ss_pred ecC---------------CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 81 NKK---------------EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 81 ~~~---------------~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
... .....+-|||.|.||...|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 332 11223678999999999999999865
No 59
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.77 E-value=5.8e-08 Score=84.11 Aligned_cols=94 Identities=21% Similarity=0.297 Sum_probs=71.0
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC--CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
..||||.++++++ . ++|||+|=...|=|+++.+.+. -.+-+.+-+ .++.|++.-- ..+..+.|.||.+
T Consensus 3 ikEG~L~K~~~k~--~---~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L-~~~~V~~~~~---~~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKKG--L---QQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPL-RGMLTEESEH---EWGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCCC--C---ceEEEEEccceEEEEEeecCCCceEEEEEEEEc-CceEEeeccC---CcCCceeEEEEcC-
Confidence 4799999987653 2 6777777777766788777544 234455555 8889987311 1256799999965
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
.+.++|.|.|.+|...||++|+.||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68899999999999999999999975
No 60
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=3.6e-08 Score=84.63 Aligned_cols=97 Identities=16% Similarity=0.270 Sum_probs=70.3
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC--
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE-- 84 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~-- 84 (500)
.-|||-..+.. +..-=++.|||||..+.|+|||.+-. .+|-.-+.+ .|++|.+. |..--...+.|.+||+..
T Consensus 3 rkgwl~~~n~~-~m~ggsK~~WFVLt~~~L~wykd~ee--KE~kyilpL-dnLk~Rdv--e~gf~sk~~~FeLfnpd~rn 76 (110)
T cd01256 3 RKGWLSISNVG-IMKGGSKDYWFVLTSESLSWYKDDEE--KEKKYMLPL-DGLKLRDI--EGGFMSRNHKFALFYPDGRN 76 (110)
T ss_pred eeeeEEeeccc-eecCCCcceEEEEecceeeeeccccc--ccccceeec-cccEEEee--cccccCCCcEEEEEcCcccc
Confidence 46898664332 21222489999999999999986543 377444444 89998883 441112239999998753
Q ss_pred ---CceeEEEeecCHHHHHHHHHHHHHH
Q 010823 85 ---KYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 85 ---~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
..+|++++|.|.||++.|+-+|-+|
T Consensus 77 vykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 77 VYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccchheeeecCCCHHHHHHHHHHHHhc
Confidence 3589999999999999999999998
No 61
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.73 E-value=4.2e-08 Score=79.06 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=72.7
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~ 85 (500)
++|||++..... ..+| ++||++|.++.|.+|+..+... ..|...+.|.+ +.|...-.. .+..+.|.|-....
T Consensus 1 ~~G~l~~~~~~~-~~~w-~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~-~~v~~~~~~---~~~~~~f~i~~~~~- 73 (96)
T cd00821 1 KEGYLLKKTGKL-RKGW-KRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSG-AEVEESPDD---SGRKNCFEIRTPDG- 73 (96)
T ss_pred CcchhhhhhChh-hCCc-cEEEEEEECCEEEEEECCCCCcCCCCcceEEcCC-CEEEECCCc---CCCCcEEEEecCCC-
Confidence 589999977665 2233 9999999999999998776642 47888888855 777653111 12468888887754
Q ss_pred ceeEEEeecCHHHHHHHHHHHHHH
Q 010823 86 YHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 86 ~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+.+.|.|.|.+|+..|+.+|+.|
T Consensus 74 -~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 74 -RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred -cEEEEEeCCHHHHHHHHHHHhcC
Confidence 89999999999999999999865
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.69 E-value=4.7e-07 Score=81.01 Aligned_cols=139 Identities=14% Similarity=0.122 Sum_probs=89.6
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEE
Q 010823 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (500)
Q Consensus 231 KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyv 310 (500)
++...|+|||+.|+++|.|.+ ..++|.+.+..+++++..++.. .++.......+.+.. +.-+.+... ..++....
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~-~~~~w~p~v~~~~~l~~~~~~~-~~~~~~~~~~~~~~~--~~~v~~~~~-~~~~~~~~ 76 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYD-NLAEFIPNLAESRLLERNGNRV-VLEQTGKQGILFFKF--EARVVLELR-EREEFPRE 76 (144)
T ss_pred eEEEEECCCHHHHHHHHhChh-hHHhhCcCceEEEEEEcCCCEE-EEEEeeeEEEEeeee--eEEEEEEEE-EecCCCce
Confidence 678899999999999999986 5889999999999998754333 334431111100001 111111111 11110111
Q ss_pred EEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhhh
Q 010823 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 311 I~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~~ 387 (500)
+.++.+.. | + ....|.|.++|++++ + +|+|+|.++++|++.+|.++ +.++...+..+|++|++.
T Consensus 77 i~~~~~~g---~-----~--~~~~g~w~~~~~~~~-~--~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 77 LDFEMVEG---D-----F--KRFEGSWRLEPLADG-G--GTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred EEEEEcCC---c-----h--hceEEEEEEEECCCC-C--eEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 0 0 234789999999741 2 79999999999999998875 888999999999999864
No 63
>PF15409 PH_8: Pleckstrin homology domain
Probab=98.66 E-value=4.9e-08 Score=82.98 Aligned_cols=83 Identities=20% Similarity=0.500 Sum_probs=58.0
Q ss_pred eEEEEeeeccccceeeeeeEEEE--ecceeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 9 GWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 9 Gwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
|||.+++++++ .-| |+||||| +.-.|.||+...... +.||+.++|..+. ..+++ .| +
T Consensus 1 G~llKkrr~~l-qG~-~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I---------~i-d-- 62 (89)
T PF15409_consen 1 GWLLKKRRKPL-QGW-HKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRI---------DI-D-- 62 (89)
T ss_pred CcceeeccccC-CCc-eeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEE---------EE-E--
Confidence 89999877653 333 9999999 999999998554422 5666666663331 11222 22 2
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.+...+-|=|.|.+|...|+.||+.|
T Consensus 63 sg~~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 63 SGDEIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred cCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence 23456777799999999999999987
No 64
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.59 E-value=1.2e-06 Score=83.98 Aligned_cols=135 Identities=19% Similarity=0.152 Sum_probs=97.5
Q ss_pred cccHHHHHHHHhcCC-CCccchhcccceeEEEEEe----------cCceeEEEEEEecccCCCcCCCceEEEEEEEEEcC
Q 010823 237 EASCEEIFELVMSMD-GTRYEWDCSFQYGSLVEEV----------DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND 305 (500)
Q Consensus 237 ~a~pe~VfevL~d~d-~~R~eWD~~~~~~~vVE~i----------Dd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~e 305 (500)
.++-++....|..-- ++=+++.+.+...+.++.. ++...|....++ +|+|+++|||+.+.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 577888888776531 1334788999999999998 344555444444 88999999999998776554
Q ss_pred ---------CCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCC--C-CCCCCceEEEEEEeeecCCCccchh-hhh
Q 010823 306 ---------DGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLK--P-RNGRPRTQVQHLMQIDLKGWGVGYL-SMF 372 (500)
Q Consensus 306 ---------DGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~--~-~~g~~~t~VT~i~~vDpkGwips~v-n~~ 372 (500)
...++|++..++|+.+|+.+|+|||.-.+ -=.|+-++ . ++......=++....|+||+||.|+ ++.
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~S-VE~ire~p~~~~~~~~~~veW~MaT~SdaGG~IP~w~q~~~ 168 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYES-VERIRELPDTKDDDEEGPVEWIMATRSDAGGSIPRWMQEMG 168 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEEE-EEEEEEccCCCCCCCCCcEEEEEEEeeCCCCcccHHHHhcc
Confidence 24689999999999999999999998744 33344442 1 0122356667778899999999998 454
Q ss_pred hHH
Q 010823 373 QQH 375 (500)
Q Consensus 373 ~~s 375 (500)
++.
T Consensus 169 ~p~ 171 (184)
T PF11274_consen 169 TPG 171 (184)
T ss_pred CcH
Confidence 444
No 65
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.44 E-value=8.7e-06 Score=71.80 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=90.9
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCcee-EEEEEEecccCCCcCCCceEEEEEEEEEcCCC
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTA-ILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 307 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~td-IVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDG 307 (500)
.+.....|+|||++|+++|.|.+ ..++|.+.+.+.++++.-++... .++..+. . ..+.. +++... ...+..
T Consensus 3 ~v~~s~~i~ap~e~V~~~l~D~~-~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~-~~~~~~--~~~~~~ 74 (140)
T cd07819 3 KVSREFEIEAPPAAVMDVLADVE-AYPEWSPKVKSVEVLLRDNDGRPEMVRIGVG---A-YGIKD-TYALEY--TWDGAG 74 (140)
T ss_pred eEEEEEEEeCCHHHHHHHHhChh-hhhhhCcceEEEEEeccCCCCCEEEEEEEEe---e-eeEEE-EEEEEE--EEcCCC
Confidence 35566789999999999999975 68899999999999876543332 3333321 1 12222 444222 222222
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHhh
Q 010823 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVAD 386 (500)
Q Consensus 308 syvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la~ 386 (500)
.|.++++... +.....+.|.|+|.++ .|+|+|.++.+++|.+|.++ +.+.+.++..++++|+.
T Consensus 75 --~i~~~~~~~~---------~~~~~~~~~~~~~~~~-----~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (140)
T cd07819 75 --SVSWTLVEGE---------GNRSQEGSYTLTPKGD-----GTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKK 138 (140)
T ss_pred --cEEEEEeccc---------ceeEEEEEEEEEECCC-----CEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhh
Confidence 2444544321 2333457899999962 69999999999999999886 77888889999988874
No 66
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.30 E-value=1.4e-05 Score=70.80 Aligned_cols=136 Identities=10% Similarity=-0.017 Sum_probs=90.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcE
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsy 309 (500)
+++...|++||++|+++|.|.+ ...+|.+.+...+++ +++...++.... + ++...|.-...++....++..|
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~-~~~~w~p~~~~~~~~---~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~ 74 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPE-VLARCIPGCESLEKI---GPNEYEATVKLK---V-GPVKGTFKGKVELSDLDPPESY 74 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHH-HHHhhccchhhcccc---CCCeEEEEEEEE---E-ccEEEEEEEEEEEEecCCCcEE
Confidence 5677889999999999998864 577999988876654 344444444443 2 3444454333333332333444
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCc---cch-hhhhhHHHHHHHHHHHh
Q 010823 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG---VGY-LSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 310 vI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwi---ps~-vn~~~~s~~~~~L~~la 385 (500)
.+...... + .+.....+-|.|+|.+ + .|+|+|.++++++|.+ +.+ ++.+...++-+++++|+
T Consensus 75 ~~~~~~~~-~--------~~~~~~~~~~~l~~~~---~--gT~v~~~~~~~~~g~l~~l~~~~~~~~~~~~~~~~~~~l~ 140 (144)
T cd05018 75 TITGEGKG-G--------AGFVKGTARVTLEPDG---G--GTRLTYTADAQVGGKLAQLGSRLIDGAARKLINQFFENLA 140 (144)
T ss_pred EEEEEEcC-C--------CceEEEEEEEEEEecC---C--cEEEEEEEEEEEccChhhhCHHHHHHHHHHHHHHHHHHHH
Confidence 44432211 1 1222346789999983 2 6999999999999987 444 47888889999999998
Q ss_pred hh
Q 010823 386 DE 387 (500)
Q Consensus 386 ~~ 387 (500)
+.
T Consensus 141 ~~ 142 (144)
T cd05018 141 SK 142 (144)
T ss_pred Hh
Confidence 64
No 67
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.29 E-value=5.5e-06 Score=74.01 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=70.4
Q ss_pred eeeEEEEee------ec-cc-cceeeeeeEEEEecceeehhccCCCCC-----CccceeEEecCCeEEeeCCcceecCee
Q 010823 7 YEGWMVRYG------RR-KI-GRSFIHMRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNCRVEDRGLKTHHGHM 73 (500)
Q Consensus 7 ~eGwl~~~g------~~-~~-g~~~~~~Ryfvl~g~~l~~yk~~p~~~-----~~pi~~~~i~~~~~V~~~g~~~~~~~~ 73 (500)
+||+|+++- +. ++ .++| ++||.||+|+.|..||++-... +.+-..+-| .+|.++ ......+.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~W-k~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi-~~a~~~---ia~dy~Kr 76 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSW-KMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISI-HHALAT---RASDYSKK 76 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcc-eEEEEEEECCEEEEEccCcccccccccccccceEEe-ccceeE---eeccccCC
Confidence 589999874 22 22 2455 9999999999999999885311 122244556 334333 23556678
Q ss_pred eEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 74 VYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 74 ~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
-+||+|-.+ ..+.+-|-|.+.+|+.+|+.+|..|+
T Consensus 77 ~~VF~L~~~--~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 77 PHVFRLRTA--DWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 899999875 46889999999999999999999983
No 68
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=98.15 E-value=7.4e-05 Score=65.74 Aligned_cols=129 Identities=19% Similarity=0.171 Sum_probs=90.5
Q ss_pred ecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEe
Q 010823 236 VEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRS 315 (500)
Q Consensus 236 V~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~S 315 (500)
|+||+++|++++.|.+ ..++|.+.+.++++++.-+++..+ .+... ..-..+.|+........ .. +.+..
T Consensus 1 V~ap~~~V~~~i~D~e-~~~~~~p~~~~v~vl~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~--~~--~~~~~ 69 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYE-NYPRFFPPVKEVRVLERDGDGMRA-RWEVK-----FGGIKRSWTSRVTEDPP--ER--IRFEQ 69 (130)
T ss_dssp ESS-HHHHHHHHTTGG-GHHHHCTTEEEEEEEEEECCEEEE-EEEEC-----TTTTCEEEEEEEEEECT--TT--EEEES
T ss_pred CCCCHHHHHHHHHHHH-HHHHhCCCCceEEEEEeCCCeEEE-EEEEe-----cCCEEEEEEEEEEEEEe--ee--eeeee
Confidence 6899999999999975 688999999999999998775444 33322 23445667654443332 22 33333
Q ss_pred cCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh-hhhhHHHHHHHHHHHh
Q 010823 316 REHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL-SMFQQHCLFQMLNSVA 385 (500)
Q Consensus 316 V~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v-n~~~~s~~~~~L~~la 385 (500)
+. |- .....|.|.++|.++..|+.+|.|++.+..++++.++..+ ..+......++|++++
T Consensus 70 ~~--------g~--~~~~~g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 70 IS--------GP--FKSFEGSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp SE--------TT--EEEEEEEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cC--------CC--chhcEEEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 21 11 2345789999999841123589999999999999998775 7888888888888764
No 69
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=97.80 E-value=9.7e-05 Score=65.84 Aligned_cols=96 Identities=21% Similarity=0.299 Sum_probs=60.7
Q ss_pred eeeEEEEe------eecc--ccceeeeeeEEEEecceeehhccCC--C----------CCCccceeEEecCCeEEeeCCc
Q 010823 7 YEGWMVRY------GRRK--IGRSFIHMRYFVLESRLLAYYKKKP--Q----------DNQVPIKTLLIDGNCRVEDRGL 66 (500)
Q Consensus 7 ~eGwl~~~------g~~~--~g~~~~~~Ryfvl~g~~l~~yk~~p--~----------~~~~pi~~~~i~~~~~V~~~g~ 66 (500)
+||||+++ |.+. -.++| +.=|.||+|..|.+||... . .+..|+.++-| .+|..+.
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L-~~a~a~~--- 76 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISL-HHALAEI--- 76 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE--TT-EEEE---
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEe-cceEEEe---
Confidence 69999995 3333 46677 8889999999999999832 1 11346667777 5666654
Q ss_pred ceecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 67 KTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 67 ~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
-.-+-+--+||+|- .....++-|-|.|.+|+..||.+|..+
T Consensus 77 a~dY~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~ 117 (119)
T PF15410_consen 77 ASDYTKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYA 117 (119)
T ss_dssp ETTBTTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred CcccccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence 12233567888886 345789999999999999999999876
No 70
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=97.71 E-value=0.0007 Score=60.30 Aligned_cols=131 Identities=16% Similarity=0.097 Sum_probs=80.3
Q ss_pred EEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEE--EEEEcCCCcEE
Q 010823 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVR--YWRRNDDGSYV 310 (500)
Q Consensus 233 vgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR--~wrr~eDGsyv 310 (500)
..+|++||++||++|.|.+ ..++|.+. ...++++.- +....++. |.+..++..... ......++..
T Consensus 4 s~~i~ap~~~V~~~l~D~~-~~p~~~p~-~~~~~~~~~-~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~~- 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAE-RWPEFLPT-VHVERLELD-GGVERLRM--------WATAFDGSVHTWTSRRVLDPEGRR- 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHH-hhhccCCC-ceEEEEEEc-CCEEEEEE--------EEEcCCCcEEEEEEEEEEcCCCCE-
Confidence 4689999999999999986 57789998 788887763 34433332 112223332221 1112222332
Q ss_pred EEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc---hhhhhhHHHHHHHHHHHhhh
Q 010823 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG---YLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 311 I~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips---~vn~~~~s~~~~~L~~la~~ 387 (500)
|.+..+.-+ + +.....|-|.++|.++ + +|+|+|.+..++++.+|- .+-+++...+-.+|.+|++.
T Consensus 72 i~~~~~~~~------~--~~~~~~g~w~~~~~~~--~--~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~ 139 (142)
T cd08861 72 IVFRQEEPP------P--PVASMSGEWRFEPLGG--G--GTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAA 139 (142)
T ss_pred EEEEEeeCC------C--ChhhheeEEEEEECCC--C--cEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHH
Confidence 344433211 1 1223467899999973 3 799999999999997752 23455556666777777753
No 71
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.67 E-value=0.00046 Score=61.98 Aligned_cols=99 Identities=17% Similarity=0.305 Sum_probs=67.5
Q ss_pred eeEEEEeeecc--ccceeeeeeEEEEecc--eeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCe----eeEE
Q 010823 8 EGWMVRYGRRK--IGRSFIHMRYFVLESR--LLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGH----MVYV 76 (500)
Q Consensus 8 eGwl~~~g~~~--~g~~~~~~Ryfvl~g~--~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~----~~yv 76 (500)
-.||||+.++. .+..=.|.|||-|... .|.-...+|... ..=.+++.|+.=..|.|. ...--|. --|+
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~-~~~~~~~~~~~~~~s 90 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDG-NPSPPGLKKPDHNKS 90 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCC-CCCCccccccccceE
Confidence 35999998887 1223469999999995 455445456432 334577888666677654 2222222 3355
Q ss_pred EEEEecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 77 ~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
|.|. ...+.++|.|.+.++++-|+.||+..+
T Consensus 91 i~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 91 IIIV---TPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 5555 347899999999999999999998764
No 72
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.63 E-value=4.6e-05 Score=78.69 Aligned_cols=97 Identities=24% Similarity=0.373 Sum_probs=71.0
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEe--cceeehhccCCCCC---CccceeEEecCCe-EEeeCCcceecCeeeEEEE
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLE--SRLLAYYKKKPQDN---QVPIKTLLIDGNC-RVEDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~--g~~l~~yk~~p~~~---~~pi~~~~i~~~~-~V~~~g~~~~~~~~~yv~~ 78 (500)
+.+||||.+.|..---+ |.|||+|. |.++- ||++|.+- ..|+---.|-.|- |-.++-|- +++-|=|
T Consensus 15 vvkEgWlhKrGE~IknW---RpRYF~l~~DG~~~G-yr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrP----ntFiiRc 86 (516)
T KOG0690|consen 15 VVKEGWLHKRGEHIKNW---RPRYFLLFNDGTLLG-YRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRP----NTFIIRC 86 (516)
T ss_pred hHHhhhHhhcchhhhcc---cceEEEEeeCCceEe-eccCCccCCCCcccccchhhhhhhhhhccCCCC----ceEEEEe
Confidence 45899999999887666 99999996 78888 99999886 4676665553332 33333332 4666666
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
+-...--. -+|.+.|++|-..|++|++.+.+
T Consensus 87 LQWTTVIE--RTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 87 LQWTTVIE--RTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred eeeeeeee--eeeecCCHHHHHHHHHHHHHHhh
Confidence 66554322 26899999999999999998754
No 73
>PRK10724 hypothetical protein; Provisional
Probab=97.59 E-value=0.0023 Score=59.94 Aligned_cols=134 Identities=10% Similarity=0.173 Sum_probs=89.3
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCC
Q 010823 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD 306 (500)
Q Consensus 227 ~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eD 306 (500)
.+.++...+|++|+++||+++.|++ ..++|-+.+.+++++++-++... ....+. ..+ + ..-|...+.+. .+
T Consensus 14 M~~i~~~~~v~~s~~~v~~lv~Dve-~yp~flp~~~~s~vl~~~~~~~~-a~l~v~---~~g-~-~~~f~srv~~~--~~ 84 (158)
T PRK10724 14 MPQISRTALVPYSAEQMYQLVNDVQ-SYPQFLPGCTGSRVLESTPGQMT-AAVDVS---KAG-I-SKTFTTRNQLT--SN 84 (158)
T ss_pred CCeEEEEEEecCCHHHHHHHHHHHH-HHHHhCcccCeEEEEEecCCEEE-EEEEEe---eCC-c-cEEEEEEEEec--CC
Confidence 5578888899999999999999986 58899999999999998766532 222221 111 2 34455444442 23
Q ss_pred CcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccch-hhhhhHHHHHHHHHHHh
Q 010823 307 GSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 307 GsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~-vn~~~~s~~~~~L~~la 385 (500)
+ .|....++.| . ....|.|.++|+++ + .|+|++.+..+++-.+... ++.+...+.-.++++..
T Consensus 85 ~--~I~~~~~~Gp--------F--~~l~g~W~f~p~~~--~--~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~ 148 (158)
T PRK10724 85 Q--SILMQLVDGP--------F--KKLIGGWKFTPLSQ--E--ACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFT 148 (158)
T ss_pred C--EEEEEecCCC--------h--hhccceEEEEECCC--C--CEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3444555322 1 13578999999973 2 6999999999998877543 35555555545554444
No 74
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.54 E-value=0.00038 Score=61.80 Aligned_cols=95 Identities=19% Similarity=0.302 Sum_probs=64.9
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeC-CcceecCeeeEEEEEEecCCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDR-GLKTHHGHMVYVLSVYNKKEK 85 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~-g~~~~~~~~~yv~~i~~~~~~ 85 (500)
+||||+|+-..---+ +++|++|..|.+.||+.+-. ..|.|-|-+.+=+.|+.. |--...+...|.|.|--.
T Consensus 2 kEGWmVHyT~~d~~r---KRhYWrLDsK~Itlf~~e~~--skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~--- 73 (117)
T cd01239 2 KEGWMVHYTSSDNRR---KKHYWRLDSKAITLYQEESG--SRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRTT--- 73 (117)
T ss_pred ccceEEEEecCccce---eeeEEEecCCeEEEEEcCCC--CeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEec---
Confidence 699999988777667 89999999999999998765 356666666666667643 211122445566665432
Q ss_pred ceeEEEe--------------------ecCHHHHHHHHHHHHHH
Q 010823 86 YHRITMA--------------------AFNIQEALIWKEKIELV 109 (500)
Q Consensus 86 ~~~~~~~--------------------a~~~~e~~~W~~a~~~a 109 (500)
+..|=+| ....+-|..|-.||++|
T Consensus 74 ~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 74 TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 2233332 24567789999999886
No 75
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.52 E-value=0.0043 Score=54.57 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=83.8
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcE
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsy 309 (500)
+.....|+||+++||+++.|.+ ..++|.+.+..++++.. .... +.++ .|+ ...++|.... .. .+.+..
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~-~~~~w~~~~~~~~~~~~--~~~~---~~~~---~~~-g~~~~~~~~v-~~-~~~~~~ 69 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFE-NLPRFMSHVESVEQLDD--TRSH---WKAK---GPA-GLSVEWDAEI-TE-QVPNER 69 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChh-hhHHHhhhhcEEEEcCC--CceE---EEEe---cCC-CCcEEEEEEE-ec-cCCCCE
Confidence 3566789999999999999875 68899999888777642 1122 2222 333 4456665432 22 223333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc-----hhhhhhHHHHHHHHHHH
Q 010823 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG-----YLSMFQQHCLFQMLNSV 384 (500)
Q Consensus 310 vI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips-----~vn~~~~s~~~~~L~~l 384 (500)
|.+.....+. ...+-|.++|+++ + +|.|+|.++.++.+.++. +++...+..+-..|++|
T Consensus 70 -i~~~~~~~~~-----------~~~~~~~f~~~~~--~--~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 133 (139)
T cd07817 70 -IAWRSVEGAD-----------PNAGSVRFRPAPG--R--GTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRF 133 (139)
T ss_pred -EEEEECCCCC-----------CcceEEEEEECCC--C--CeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 4444432211 1346788999863 2 799999999999987743 23566677788888888
Q ss_pred hh
Q 010823 385 AD 386 (500)
Q Consensus 385 a~ 386 (500)
+.
T Consensus 134 k~ 135 (139)
T cd07817 134 KQ 135 (139)
T ss_pred HH
Confidence 75
No 76
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=97.48 E-value=0.0049 Score=53.83 Aligned_cols=136 Identities=14% Similarity=0.084 Sum_probs=84.6
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
.++....|++|++.||++|.|.+ ....|.+.+...++++.-++-..+....+. .. +.+. .+ +...++..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~-~~~~w~~~~~~~~~~~~~~~~g~~~~~~~~-----~g---~~~~-~~-i~~~~~~~ 70 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFG-GLHKWHPAVASCELEGGGPGVGAVRTVTLK-----DG---GTVR-ER-LLALDDAE 70 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcC-chhhhccCcceEEeecCCCCCCeEEEEEeC-----CC---CEEE-EE-ehhcCccC
Confidence 36778899999999999999875 577999988888776643201112122211 11 2221 11 11122332
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccch-hhhhhHHHHHHHHHHHhhh
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY-LSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~-vn~~~~s~~~~~L~~la~~ 387 (500)
-.|.+..+.- ..| .....+-|.++|+++ + +|+|+|.++.+++|.++.. ++.++...+-..|++|+..
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~--~--~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~ 138 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGD--G--GTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAA 138 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCC--C--ccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 2344444421 011 122357899999873 3 7999999999999877554 5778888888888888753
No 77
>PF15408 PH_7: Pleckstrin homology domain
Probab=97.39 E-value=6.4e-05 Score=63.27 Aligned_cols=93 Identities=13% Similarity=0.192 Sum_probs=72.5
Q ss_pred eeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC--CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCC
Q 010823 8 EGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (500)
Q Consensus 8 eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~ 85 (500)
||+||+.....| |+||.||+|+++-||-+|.... .--+++-++ ..-+|+ |-|....--+.+|-|.-....
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~-s~Pm~~--~~~A~~N~Gi~A~G~L~~~~~ 72 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVV-SHPMVN--FSQAVPNLGINAFGFLMYSPS 72 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhh-hccccc--ccccCCCCCeeEEEEEEecCC
Confidence 799999776654 8899999999999998887654 445566666 556665 466655445667777777778
Q ss_pred ceeEEEeecCHHHHHHHHHHHHH
Q 010823 86 YHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 86 ~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
.+++++=|.|.+-+.+|++++-.
T Consensus 73 ~~~~~~FA~S~~~~~~Wi~~mN~ 95 (104)
T PF15408_consen 73 RRHVQCFASSKKVCQSWIQVMNS 95 (104)
T ss_pred cchhhhhhhHHHHHHHHHHHhcC
Confidence 89999999999999999998753
No 78
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.34 E-value=0.00051 Score=59.97 Aligned_cols=99 Identities=17% Similarity=0.281 Sum_probs=66.8
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecce-----eehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEE--
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRL-----LAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS-- 78 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~-- 78 (500)
.++||||+.|.+..= .| ++|||||.|-- +..|+++.. +|--.+.+ ++-+|.- .+...++-+.-+.
T Consensus 3 k~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks---~P~e~~ql-dGyTvDy--~~~~~~~~~~~~~~~ 74 (117)
T cd01234 3 KHCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKA---EPTEFIQL-DGYTVDY--MPESDPDPNSELSLQ 74 (117)
T ss_pred ceeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcC---Cchhheee-cceEEec--cCCCCCCcccccccc
Confidence 389999999985443 24 99999999642 334777664 66667777 4445543 3343321111111
Q ss_pred ----EEecCCCceeEEEeecCHHHHHHHHHHHHHHHhh
Q 010823 79 ----VYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQ 112 (500)
Q Consensus 79 ----i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~ 112 (500)
++|.--..+.+.||+.+-.|---|++|+=+|-.|
T Consensus 75 gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yratgq 112 (117)
T cd01234 75 GGRHFFNAVKEGDELKFATDDENERHLWVQAMYRATGQ 112 (117)
T ss_pred cchhhhheeccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence 2355566899999999999999999999999443
No 79
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.27 E-value=0.0051 Score=54.39 Aligned_cols=98 Identities=15% Similarity=0.119 Sum_probs=73.6
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeC--Cccee-cCeeeEEEEEEec
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDR--GLKTH-HGHMVYVLSVYNK 82 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~--g~~~~-~~~~~yv~~i~~~ 82 (500)
++|=|.++..++.- .+.|+|.|=.++|=|=|++-.-+ .--.|..+.-..|.|.|. |++.. +...-+.|.|||.
T Consensus 4 ~~Gel~~~s~~~g~---~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~ 80 (109)
T cd01224 4 LQGEATRQKQNKGW---NSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSE 80 (109)
T ss_pred EeeeEEEEecccCC---cccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEc
Confidence 66777766644322 37899999888888778543222 456677777799999987 55542 2346789999999
Q ss_pred CCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 83 KEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 83 ~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
..+..+.|.|.|+|+-.+||+||..
T Consensus 81 -~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 81 -STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred -CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 5577899999999999999999975
No 80
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.27 E-value=0.0029 Score=55.46 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=66.7
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
..+||=|.++- +-+. +.|||+|=...|=|=+..+..+.-=.+.++=-.++.|++.-- ...+...|.|.++
T Consensus 4 li~eG~L~K~~--rk~~---~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~-- 73 (104)
T cd01218 4 LVGEGVLTKMC--RKKP---KQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIED---DGIERNGWIIKTP-- 73 (104)
T ss_pred EEecCcEEEee--cCCC---ceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCC---cccccceEEEecC--
Confidence 34789998866 3333 778999998888742222222211112333336777775321 1245688999986
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHHHhhh
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELVIDQH 113 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a~~~~ 113 (500)
.+...+.|.|++|-..||++|++||++.
T Consensus 74 -~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 74 -TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred -CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999875
No 81
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=97.25 E-value=0.014 Score=53.70 Aligned_cols=133 Identities=12% Similarity=0.063 Sum_probs=81.4
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEE
Q 010823 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVV 311 (500)
Q Consensus 232 avgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI 311 (500)
-..+|++||+.||+++.|+. ..++|.+.+...++++. ++....+-..+.... + .. ...+.. .+..+.....|
T Consensus 5 ~si~i~a~~~~v~~lvaDv~-~~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~~-~-g~-~~~w~s---~~~~~~~~~~i 76 (146)
T cd08860 5 NSIVIDAPLDLVWDMTNDIA-TWPDLFSEYAEAEVLEE-DGDTVRFRLTMHPDA-N-GT-VWSWVS---ERTLDPVNRTV 76 (146)
T ss_pred eEEEEcCCHHHHHHHHHhhh-hhhhhccceEEEEEEEe-cCCeEEEEEEEEecc-C-CE-EEEEEE---EEEecCCCcEE
Confidence 35689999999999999985 68999999999999986 333333222211110 1 00 111211 11223334445
Q ss_pred EEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCcc---chhhhhhHHHHHHHHHHHhh
Q 010823 312 LFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV---GYLSMFQQHCLFQMLNSVAD 386 (500)
Q Consensus 312 ~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwip---s~vn~~~~s~~~~~L~~la~ 386 (500)
.++.+ +.-| - ....+.|.++|+++ .|+|++......++-.| .|+.+......-..|++|+.
T Consensus 77 ~~~~~--~~~p-~------~~m~~~W~f~~~~~-----gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~ 140 (146)
T cd08860 77 RARRV--ETGP-F------AYMNIRWEYTEVPE-----GTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKK 140 (146)
T ss_pred EEEEe--cCCC-c------ceeeeeEEEEECCC-----CEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHH
Confidence 55422 2212 1 13467899999952 49999999998775222 25666666777777777764
No 82
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.83 E-value=0.16 Score=44.25 Aligned_cols=131 Identities=13% Similarity=0.197 Sum_probs=77.1
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
.+.....|+|||++||++|.|.. ....|.+.+...+++.. +...+ ...+... +. .-+..+.....+++.
T Consensus 3 ~~~~~~~v~a~~e~V~~~l~d~~-~~~~w~~~~~~~~~~~~--~~~~~-~~~~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 3 KVEVSIEVPAPPEAVWDLLSDPE-NWPRWWPGVKSVELLSG--GGPGT-ERTVRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEEESS-HHHHHHHHTTTT-GGGGTSTTEEEEEEEEE--CSTEE-EEEEEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEEECCCHHHHHHHHhChh-hhhhhhhceEEEEEccc--cccce-eEEEEec---cc----cceeEEEEEecCCCc
Confidence 34566789999999999999875 57789998888877662 33332 2222211 11 223333333333244
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeec--CCCcc-chhhhhhHHHHHHHHHHHh
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDL--KGWGV-GYLSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDp--kGwip-s~vn~~~~s~~~~~L~~la 385 (500)
. +.++.+ ..++.. ..+.|.++|.++ .|.|++.++.++ .|++. .++...+....-+.|++|+
T Consensus 72 ~-~~~~~~-------~~~~~~---~~~~~~~~~~~~-----gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 135 (139)
T PF10604_consen 72 R-ITWRFV-------PSGFTN---GTGRWRFEPVGD-----GTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLK 135 (139)
T ss_dssp E-EEEEEE-------SSSSCE---EEEEEEEEEETT-----TEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred E-EEEEEE-------ecceeE---EEEEEEEEEcCC-----CEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 3 333332 112222 256799999862 499999999997 23332 2345556666777777776
Q ss_pred h
Q 010823 386 D 386 (500)
Q Consensus 386 ~ 386 (500)
.
T Consensus 136 ~ 136 (139)
T PF10604_consen 136 R 136 (139)
T ss_dssp H
T ss_pred c
Confidence 4
No 83
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.70 E-value=0.019 Score=51.54 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=73.9
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC----CccceeEEe-cCCeEEeeCC----cceecCeeeE
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN----QVPIKTLLI-DGNCRVEDRG----LKTHHGHMVY 75 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~----~~pi~~~~i-~~~~~V~~~g----~~~~~~~~~y 75 (500)
.+|||||=.-..+++.+-| +++|.||.+.-|+.|-..+... .+|.-.+-+ |+-+.|.--+ ..+-.....|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 4699999765555544555 9999999999999887544322 355555566 6777775321 1122346789
Q ss_pred EEEEEecC----CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 76 VLSVYNKK----EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 76 v~~i~~~~----~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+|.|-..- -....+-|-|.|-.|-.+|..||++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 99997642 23577789999999999999999986
No 84
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.70 E-value=0.018 Score=51.27 Aligned_cols=98 Identities=18% Similarity=0.246 Sum_probs=68.0
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC--------CccceeEEecCCeEEeeCCcceecCeeeEEE
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL 77 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--------~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~ 77 (500)
.+||=|-++...+-.- +.|||+|=.++|=|=|.+..-. .-=+|..+--..+.|.|.. -+...-+.|
T Consensus 5 I~EG~L~ki~~~~~~~---q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~---d~~~~knaF 78 (112)
T cd01261 5 IMEGTLTRVGPSKKAK---HERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKP---DSSEYKNAF 78 (112)
T ss_pred cccCcEEEEecccCCc---ceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcC---CCcccCceE
Confidence 4899999888665333 7899999988887666543211 1123333444556666531 123457889
Q ss_pred EEEecCCCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 78 ~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
.|.++. .+.+.|-|.|+||-..||+||..|++
T Consensus 79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 999863 45799999999999999999999964
No 85
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=96.65 E-value=0.00041 Score=75.79 Aligned_cols=88 Identities=26% Similarity=0.283 Sum_probs=74.5
Q ss_pred CcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc
Q 010823 288 MFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG 367 (500)
Q Consensus 288 ~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips 367 (500)
.|...|||+++| |..+++..|++|...++-.| |||.+..+.|.|+|.+. | .++|+|+..+|++|..+.
T Consensus 574 ~ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~--g--~sr~~~i~r~dlkg~~~~ 641 (674)
T KOG2200|consen 574 RPHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG--G--QSRVTHICRVDLKGRSPE 641 (674)
T ss_pred CCCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC--c--chhhhhhhhhhcccCCch
Confidence 356789999998 78899999999977777777 99999999999999984 3 789999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHhhh
Q 010823 368 YLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 368 ~vn~~~~s~~~~~L~~la~~ 387 (500)
|+++...+++.....++++.
T Consensus 642 wy~k~fg~~c~~~~~~~r~s 661 (674)
T KOG2200|consen 642 WYNKSFGHLCCLEVARIRDS 661 (674)
T ss_pred hhhccccchhhhhhcccchh
Confidence 99998888766555555443
No 86
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.46 E-value=0.096 Score=47.34 Aligned_cols=136 Identities=15% Similarity=0.087 Sum_probs=72.2
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcC-CC-c
Q 010823 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND-DG-S 308 (500)
Q Consensus 231 KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~e-DG-s 308 (500)
.....|++||+.|+++|.|.+ ....|.+. ++.++.+++++-..-.+++ .. +++ ..|-....+...+ .+ .
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~-~~~~~~pg---~~~~~~~~~~~~~~~~~~~--~g--~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIE-RVAPCLPG---ASLTEVEGDDEYKGTVKVK--LG--PIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred CceEEecCCHHHHHHHhcCHH-HHHhcCCC---ceeccccCCCeEEEEEEEE--Ec--cEE-EEEEEEEEEEeccCCCcE
Confidence 345679999999999998864 34566554 4444445555433222222 11 221 1232111111111 22 2
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchh----hhhhHHHHHHHHHHH
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYL----SMFQQHCLFQMLNSV 384 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~v----n~~~~s~~~~~L~~l 384 (500)
+.+...... ....|.+++.+ -|.+.|.+ + .|+|+|.+.+++.|.++.+. .+....+.-+++++|
T Consensus 73 ~~~~~~g~~----~~~~g~~~~~~---~~~l~~~~---~--gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l 140 (146)
T cd07823 73 AVLEATGKD----ARGQGTAEATV---TLRLSPAG---G--GTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANL 140 (146)
T ss_pred EEEEEEEec----CCCcceEEEEE---EEEEEecC---C--cEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHH
Confidence 222211110 01112333333 57788832 2 79999999999999996654 455556666666666
Q ss_pred hhh
Q 010823 385 ADE 387 (500)
Q Consensus 385 a~~ 387 (500)
++.
T Consensus 141 ~~~ 143 (146)
T cd07823 141 EAR 143 (146)
T ss_pred HHH
Confidence 654
No 87
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.45 E-value=0.03 Score=49.66 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=69.2
Q ss_pred eeeeEEEEeeecc----ccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCC----cceecCeeeEE
Q 010823 6 VYEGWMVRYGRRK----IGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRG----LKTHHGHMVYV 76 (500)
Q Consensus 6 ~~eGwl~~~g~~~----~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g----~~~~~~~~~yv 76 (500)
.|||||=.-..++ .|. +++|.||.+.-++.|-...... +.|.-.+=++.-+.|..-. ..+-.....|+
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW---~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~I 77 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW---KKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKI 77 (112)
T ss_pred CcceeEEccCCCCccccCCc---eEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeE
Confidence 3899996655533 455 9999999999999886444322 4565544444433332110 11122467899
Q ss_pred EEEEecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 77 LSVYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 77 ~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
|.|--. ++++.+-|-|.|-+|-.+|..||..-|
T Consensus 78 F~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 78 FQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred EEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 999875 457999999999999999999998653
No 88
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.39 E-value=0.22 Score=41.75 Aligned_cols=133 Identities=13% Similarity=0.048 Sum_probs=73.6
Q ss_pred EEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEE
Q 010823 231 KAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYV 310 (500)
Q Consensus 231 KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyv 310 (500)
+....|++|+++||++|.|.+ ....|.+.+..++++..........+.. . .. +....++.. +.......-.+.
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~-~v~~~~~~~~~~ 74 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPE-RWPEWSPGLERVEVLGGGEGGVGARFVG-G---RK-GGRRLTLTS-EVTEVDPPRPGR 74 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChh-hhhhhCcccceEEEcCCCCccceeEEEE-E---ec-CCccccceE-EEEEecCCCceE
Confidence 456789999999999998864 6789999998888776432222221111 1 00 011111111 111111111121
Q ss_pred EEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCcc----chhhhhhHHHHHHHHHHHh
Q 010823 311 VLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV----GYLSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 311 I~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwip----s~vn~~~~s~~~~~L~~la 385 (500)
....+..+. ....+.|.++|.++ ..|+|++....++++++. ..+........-+++.+++
T Consensus 75 ~~~~~~~~~-----------~~~~~~~~~~~~~~----~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (141)
T cd07812 75 FRVTGGGGG-----------VDGTGEWRLEPEGD----GGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALK 138 (141)
T ss_pred EEEecCCCC-----------cceeEEEEEEECCC----CcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHH
Confidence 122211110 23467899999973 279999999999999873 2234444444555555554
No 89
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.34 E-value=0.13 Score=44.55 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=73.8
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEec--CceeEEEEEEecccCCCcCCCceEE-EEEEEEEcCCCc
Q 010823 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD--GHTAILYHRLQLDWFPMFVWPRDLC-YVRYWRRNDDGS 308 (500)
Q Consensus 232 avgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iD--d~tdIVY~~~~~~~~P~~vs~RDFV-~lR~wrr~eDGs 308 (500)
....|+||+++|+++|.|.. ..++|++.+..++++..-. ..+.+ ..... ++ +..+- ..+... .+.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~-~~~~w~~~~~~~~~~~~~~~~~g~~~-~~~~~---~~----g~~~~~~~~v~~-~~p~~ 72 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFE-NAPEWDPGVVEVEKITDGPVGVGTRY-HQVRK---FL----GRRIELTYEITE-YEPGR 72 (140)
T ss_pred eEEEEcCCHHHHHHHHHCcc-chhhhccCceEEEEcCCCCCcCccEE-EEEEE---ec----CceEEEEEEEEE-ecCCc
Confidence 45679999999999999975 5779999887766654311 11222 12221 11 11111 111111 12333
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCcc---chhhhhhHHHHHHHHHHHh
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV---GYLSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwip---s~vn~~~~s~~~~~L~~la 385 (500)
+ +.+.... +.++ ..+-|.++|.++ .|.|++.+..+++++.+ ..+....+...-++|++|+
T Consensus 73 ~-~~~~~~~--------~~~~---~~~~~~~~~~~~-----~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk 135 (140)
T cd08865 73 R-VVFRGSS--------GPFP---YEDTYTFEPVGG-----GTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLK 135 (140)
T ss_pred E-EEEEecC--------CCcc---eEEEEEEEEcCC-----ceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3 2333221 1122 256799999852 69999999999977542 2234555666777777777
Q ss_pred hh
Q 010823 386 DE 387 (500)
Q Consensus 386 ~~ 387 (500)
+.
T Consensus 136 ~~ 137 (140)
T cd08865 136 AL 137 (140)
T ss_pred HH
Confidence 53
No 90
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=96.19 E-value=0.21 Score=45.30 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=82.4
Q ss_pred EEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcEEEE
Q 010823 233 VGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVL 312 (500)
Q Consensus 233 vgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~ 312 (500)
...|++|+++|+++|.| ...|-.++..++.++.++++... -.+ -++ .+++.+=-..++.....++..+.+.
T Consensus 2 s~~v~a~~~~vw~~l~D----~~~l~~ciPG~~~~e~~~~~~~~-~~~--v~v--G~i~~~~~g~~~~~~~~~~~~~~~~ 72 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSD----PENLARCIPGVESIEKVGDEYKG-KVK--VKV--GPIKGTFDGEVRITEIDPPESYTLE 72 (140)
T ss_dssp EEEECS-HHHHHHHHT-----HHHHHHHSTTEEEEEEECTEEEE-EEE--EES--CCCEEEEEEEEEEEEEETTTEEEEE
T ss_pred cEEecCCHHHHHHHhcC----HHHHHhhCCCcEEeeecCcEEEE-EEE--EEe--ccEEEEEEEEEEEEEcCCCcceEee
Confidence 45799999999999977 44788999999999999843332 222 233 3455544444555555555555444
Q ss_pred EEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc----hhhhhhHHHHHHHHHHHhhh
Q 010823 313 FRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG----YLSMFQQHCLFQMLNSVADE 387 (500)
Q Consensus 313 ~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips----~vn~~~~s~~~~~L~~la~~ 387 (500)
...-.. .+-+.+.. --.+...+ .+ .|.|+|-..+++.|.+.. .+......++-++.++++..
T Consensus 73 ~~g~g~------~~~~~~~~---~~~~~~~~--~~--~T~v~~~~~~~~~G~la~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 73 FEGRGR------GGGSSASA---NITLSLED--DG--GTRVTWSADVEVGGPLASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp EEEEEC------TCCEEEEE---EEEEEECC--CT--CEEEEEEEEEEEECHHHHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeccCC------ccceEEEE---EEEEEcCC--CC--CcEEEEEEEEEEccCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 444321 12233332 22234333 22 399999999999999944 45566666777777777654
No 91
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.18 E-value=0.22 Score=45.03 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=72.4
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEE-ecCceeEEEEEEecccCCCcCCCceEEEE-EEEEEcCCC
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE-VDGHTAILYHRLQLDWFPMFVWPRDLCYV-RYWRRNDDG 307 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~-iDd~tdIVY~~~~~~~~P~~vs~RDFV~l-R~wrr~eDG 307 (500)
|--...|+|||++||+++.|.+ ..++|.+.+...++++. -+......+........ +..+-.. +.....+..
T Consensus 3 ~~~~~~i~ap~e~Vw~~~tD~~-~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~v~~~~p~~ 76 (146)
T cd07824 3 FHTVWRIPAPPEAVWDVLVDAE-SWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLL-----PYRLRFELRVTRIEPLS 76 (146)
T ss_pred ceEEEEecCCHHHHHHHHhChh-hcchhhhceEEEEEccCCCCCCcceEEEEEEEecC-----CcEEEEEEEEEeecCCc
Confidence 3456789999999999999875 58899999998888873 22222122221101111 2223211 111212222
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCC----ccch----hhhhhHHHHHH
Q 010823 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGW----GVGY----LSMFQQHCLFQ 379 (500)
Q Consensus 308 syvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGw----ips~----vn~~~~s~~~~ 379 (500)
.+. +... .+ .++ .+.|.|+|.+ + .|.|++-..++.+|- +..+ +......++-.
T Consensus 77 ~~~--~~~~-g~--------~~~---~~~~~~~~~~---~--gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ 137 (146)
T cd07824 77 LLE--VRAS-GD--------LEG---VGRWTLAPDG---S--GTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRA 137 (146)
T ss_pred EEE--EEEE-Ee--------eeE---EEEEEEEEcC---C--CEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHh
Confidence 222 2221 11 122 3679999964 2 699999999999873 3222 34444455555
Q ss_pred HHHHHh
Q 010823 380 MLNSVA 385 (500)
Q Consensus 380 ~L~~la 385 (500)
++++|+
T Consensus 138 ~~~~L~ 143 (146)
T cd07824 138 GEKGLA 143 (146)
T ss_pred HHHHHH
Confidence 555554
No 92
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.03 E-value=0.03 Score=49.75 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=69.9
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCcc---ceeEEe-cCCeEEeeCCcceecCeeeEEEEEEe
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVP---IKTLLI-DGNCRVEDRGLKTHHGHMVYVLSVYN 81 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~p---i~~~~i-~~~~~V~~~g~~~~~~~~~yv~~i~~ 81 (500)
+.|||||.+..-+-+. .+|||||++.=|+|+ .+...+ .| ..-+.. +.|+-..-.|++.+..-.-|.|+|-.
T Consensus 1 e~~g~LylK~~gkKsW---Kk~~f~LR~SGLYy~-~Kgksk-~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~ 75 (114)
T cd01259 1 EMEGPLYLKADGKKSW---KKYYFVLRSSGLYYF-PKEKTK-NTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKA 75 (114)
T ss_pred CccceEEEccCCCccc---eEEEEEEeCCeeEEc-cCCCcC-CHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEec
Confidence 3699999987777777 999999999999854 343333 22 111222 34455555688888888899999955
Q ss_pred cCCC---ceeEE-EeecCHHHHHHHHHHHHHH
Q 010823 82 KKEK---YHRIT-MAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 82 ~~~~---~~~~~-~~a~~~~e~~~W~~a~~~a 109 (500)
...+ ++-++ |-|++.+--..||-||+-|
T Consensus 76 ~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 76 VGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred cccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 5422 45565 5567777888999999988
No 93
>PLN02866 phospholipase D
Probab=96.01 E-value=0.047 Score=64.20 Aligned_cols=99 Identities=15% Similarity=0.135 Sum_probs=70.1
Q ss_pred eeeeEEEEe------e-eccc------cceee----eeeEEEEecceeehhccCCCCCCccceeEEecCCe---------
Q 010823 6 VYEGWMVRY------G-RRKI------GRSFI----HMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNC--------- 59 (500)
Q Consensus 6 ~~eGwl~~~------g-~~~~------g~~~~----~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~--------- 59 (500)
-+||.+.+. | ..+. +.++| +||||||+..+|. |-.+|.+. .|+-.+++|-.-
T Consensus 183 ~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~-~~~~p~~~-~~~~v~lfD~~~~~~~~~~~~ 260 (1068)
T PLN02866 183 LKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLA-LLEDPFDA-KPLDIIVFDVLPASNGNGEGQ 260 (1068)
T ss_pred cceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEE-EEecCCCC-ceeEEEEEecccccccCCCcc
Confidence 379999987 2 1111 22233 6899999999998 66789887 798999998322
Q ss_pred -EEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 60 -RVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 60 -~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
.+....-|. ...=|.|+|-|. +++++|=|.|..++..|+.|++.|..
T Consensus 261 ~~~~~~~k~~--~~~~~~~~i~~~---~r~l~l~~~s~~~~~~w~~ai~~~~~ 308 (1068)
T PLN02866 261 ISLAKEIKER--NPLRFGFKVTCG---NRSIRLRTKSSAKVKDWVAAINDAGL 308 (1068)
T ss_pred eeeccccccc--CCCcceEEEecC---ceEEEEEECCHHHHHHHHHHHHHHHh
Confidence 222211111 234567888554 88999999999999999999999943
No 94
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.88 E-value=0.014 Score=67.15 Aligned_cols=107 Identities=21% Similarity=0.380 Sum_probs=77.3
Q ss_pred CCceeeeEEEEeeecc-ccceeeeeeEEEEecceeehhccCCCCC--CccceeEEecCCeE--EeeCCcceecCeeeEEE
Q 010823 3 SKVVYEGWMVRYGRRK-IGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCR--VEDRGLKTHHGHMVYVL 77 (500)
Q Consensus 3 ~~~~~eGwl~~~g~~~-~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~pi~~~~i~~~~~--V~~~g~~~~~~~~~yv~ 77 (500)
..++|-|+||.+-... +|- | |+||-+|.|+...|+| .|.|. .+||+.|=+-.||. ||.--|++--...-|-+
T Consensus 988 idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhi 1064 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHI 1064 (1116)
T ss_pred cceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccCCceeEE
Confidence 4566999999887543 443 6 9999999999999665 78886 89999999966664 44433333333334555
Q ss_pred EEEecCCC--------ce-eEEEeecCHHHHHHHHHHHHHHHhh
Q 010823 78 SVYNKKEK--------YH-RITMAAFNIQEALIWKEKIELVIDQ 112 (500)
Q Consensus 78 ~i~~~~~~--------~~-~~~~~a~~~~e~~~W~~a~~~a~~~ 112 (500)
.+.-+++. -+ +.-|||.+.||-+.|+.+|-.++++
T Consensus 1065 e~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1065 EVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred EeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 54444321 12 6789999999999999999999765
No 95
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=95.76 E-value=0.096 Score=46.04 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=58.6
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecc-eeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
+-++|.|.+. -|+. .++|.|+|... .|.|+ +|.....- +.+.+...++|+- .+.+ .|.|.-+
T Consensus 13 Il~~g~v~K~----kgl~-~kkR~liLTd~PrL~Yv--dp~~~~~K-GeI~~~~~l~v~~-----k~~~---~F~I~tp- 75 (104)
T PF14593_consen 13 ILKQGYVKKR----KGLF-AKKRQLILTDGPRLFYV--DPKKMVLK-GEIPWSKELSVEV-----KSFK---TFFIHTP- 75 (104)
T ss_dssp EEEEEEEEEE----ETTE-EEEEEEEEETTTEEEEE--ETTTTEEE-EEE--STT-EEEE-----CSSS---EEEEEET-
T ss_pred EEEEEEEEEe----eceE-EEEEEEEEccCCEEEEE--ECCCCeEC-cEEecCCceEEEE-----ccCC---EEEEECC-
Confidence 4489999993 4553 59999999988 77755 45544222 5666777888884 3333 3445444
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHHHhhh
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~ 113 (500)
.++|-|-. ...+|..|.+||++++.+.
T Consensus 76 --~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 76 --KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp --TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred --CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 78888776 5566999999999997664
No 96
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=95.50 E-value=0.00069 Score=67.78 Aligned_cols=176 Identities=10% Similarity=-0.047 Sum_probs=116.9
Q ss_pred cEEEEeeCCeEEEEEecccCCCCccccceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEE
Q 010823 201 WRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHR 280 (500)
Q Consensus 201 Wkl~~~knGV~Vy~k~~~~~~~~~s~~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~ 280 (500)
|...+...-++++.+..+. .++.+.++..+..-........+.-+ ..+..|+..-.-...++.+..++++ +.+
T Consensus 27 ~s~~k~~~~v~~~~~a~~~-----~~~~i~~v~~~~~lf~~~~~~~i~~~-~~i~~~~~g~~v~~~~~~~~~~~~~-~~s 99 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK-----PKGNISRVRRFFCLFVTEDLVFISLL-WLIELLQNGPEVYNMLEKIQKNTDI-WTS 99 (241)
T ss_pred HHHHhhcceeEEeccCCcC-----cCCcccccceeeccccccchheeecc-hhhHHHhccchHHHHHHHHHhheee-eeE
Confidence 6666666666777766552 12345555555443333222222211 2233444333566777778888998 565
Q ss_pred EecccCCCcCCCceEEEEEEEEEcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeee
Q 010823 281 LQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQID 360 (500)
Q Consensus 281 ~~~~~~P~~vs~RDFV~lR~wrr~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vD 360 (500)
..+.+.--.+.+|+|+...+..+.+.+......++++++.+++...++|+..++.|++..|++..+. .+.-.-..+.|
T Consensus 100 ~~~~~~~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~~~--~~~~~~~~~~d 177 (241)
T KOG3845|consen 100 EFDSFNVDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIEPF--ILAWLREWFLD 177 (241)
T ss_pred ecHhhhhhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCcch--hHHHHHHHHhh
Confidence 5555555679999999999999988887777888999999999999999999999999999986542 34444456889
Q ss_pred cCCCc-cchhhhhhHHHHHHHHHHHh
Q 010823 361 LKGWG-VGYLSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 361 pkGwi-ps~vn~~~~s~~~~~L~~la 385 (500)
.+|.. +...+..++..+..+..+..
T Consensus 178 ~rg~~~~~~~~~~~~~~~~~~~~~~~ 203 (241)
T KOG3845|consen 178 LRGLPQENVGERPEARTLVNFELAPL 203 (241)
T ss_pred cccCCCccccccccccccchhhcchh
Confidence 99988 34445555444444444444
No 97
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.41 E-value=0.14 Score=46.54 Aligned_cols=97 Identities=18% Similarity=0.206 Sum_probs=63.2
Q ss_pred eeeeEEEEeeeccccc-----eeeeeeEEEEecceeehhccCCCCCCccceeEEe----cCCeEEeeCCccee-------
Q 010823 6 VYEGWMVRYGRRKIGR-----SFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLI----DGNCRVEDRGLKTH------- 69 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~-----~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i----~~~~~V~~~g~~~~------- 69 (500)
.+.|+|..+..++... --.+.||++|=..+|=|=|++..+. =.|+ -..+.|++..-...
T Consensus 4 vK~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~~-----f~V~dy~~r~~l~V~~~e~~~~~~~~~~~ 78 (125)
T cd01221 4 VKRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGST-----FVVFDYAPRSFLRVEKIEPDNQKIPLGSN 78 (125)
T ss_pred EEEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCCe-----EEEEeeccccceEEeeccccccccccccc
Confidence 4678888876654321 1136789999999888667666443 2221 24555665322221
Q ss_pred --cCeeeEEEEEEe-cCCCceeEEEeecCHHHHHHHHHHHH
Q 010823 70 --HGHMVYVLSVYN-KKEKYHRITMAAFNIQEALIWKEKIE 107 (500)
Q Consensus 70 --~~~~~yv~~i~~-~~~~~~~~~~~a~~~~e~~~W~~a~~ 107 (500)
...-+|..++.. ...+...+.|.|.|.+|.++||+||.
T Consensus 79 ~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 79 LVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 334566666554 44667889999999999999999985
No 98
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=95.30 E-value=0.86 Score=40.79 Aligned_cols=133 Identities=14% Similarity=0.038 Sum_probs=73.3
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEE-e---c--CceeEEEEEEecccCCCcCCCceEEEEEEEE
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEE-V---D--GHTAILYHRLQLDWFPMFVWPRDLCYVRYWR 302 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~-i---D--d~tdIVY~~~~~~~~P~~vs~RDFV~lR~wr 302 (500)
.+....+|++|+++||+++.|.. ..++|++.+.....++. . + ....+.+ ... .. ..+-...+. .
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~-~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~-~~~-----~~-~~~~~~~v~--~ 72 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLK-NWPEWSPWEKLDPDMKRTYSGPDSGVGASYSW-EGN-----DK-VGEGEMEIT--E 72 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcc-cCcccCchhhcCcceEEEecCCCCCCCeEEEE-ecC-----Cc-ccceEEEEE--e
Confidence 35667789999999999999874 58899997776555443 1 1 1122211 111 00 111111111 1
Q ss_pred EcCCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCcc-----chhhhhhHHHH
Q 010823 303 RNDDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV-----GYLSMFQQHCL 377 (500)
Q Consensus 303 r~eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwip-----s~vn~~~~s~~ 377 (500)
...+.. +.++... .-|.. ....+-|.++|.+ + +|+|++.+..++.+..+ ..+...+....
T Consensus 73 ~~p~~~--i~~~~~~--~~~~~------~~~~~~~~~~~~~---~--gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (150)
T cd07818 73 SVPNER--IEYELRF--IKPFE------ATNDVEFTLEPVG---G--GTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDF 137 (150)
T ss_pred cCCCcE--EEEEEEe--cCCcc------ccceEEEEEEEcC---C--ceEEEEEEEecCCchHHHHHHHhhHHHHHHHHH
Confidence 112212 2222221 01111 1225789999994 2 69999999999886543 23355556666
Q ss_pred HHHHHHHhh
Q 010823 378 FQMLNSVAD 386 (500)
Q Consensus 378 ~~~L~~la~ 386 (500)
-+.|++|+.
T Consensus 138 ~~~l~~lk~ 146 (150)
T cd07818 138 EKGLANLKA 146 (150)
T ss_pred HHHHHHHHH
Confidence 667777764
No 99
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.18 E-value=0.2 Score=43.39 Aligned_cols=91 Identities=18% Similarity=0.232 Sum_probs=62.1
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCC
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~ 85 (500)
.+||-+...+. .+.||+.|=.+.|=+=|+... .-=.|+-+.-.+.+|.++ ..+. ...|.|-.....
T Consensus 5 lleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~~--~y~~K~~i~~~~l~i~e~----~~~d-~~~F~v~~~~~p 70 (97)
T cd01222 5 LLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRGD--KYQFKAYIPCKNLMLVEH----LPGE-PLCFRVIPFDDP 70 (97)
T ss_pred eeeceEEeecC-------CCceEEEEecccEEEEEecCC--eeEEEEEEEecceEEecC----CCCC-CcEEEEEecCCC
Confidence 36776664333 255777765555543454432 345577766678888763 3333 688888666544
Q ss_pred ceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 86 YHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 86 ~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
.+++.+-|.|.|+-..||++|+.||
T Consensus 71 ~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 71 KGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred ceEEEEEecCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999985
No 100
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=95.00 E-value=0.038 Score=59.85 Aligned_cols=97 Identities=14% Similarity=0.266 Sum_probs=62.9
Q ss_pred CceeeeEEEEeeeccccceeeeeeEEEEecceeeh-hccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEE
Q 010823 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAY-YKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSV 79 (500)
Q Consensus 4 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~-yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i 79 (500)
.+.++||+++++... .| ++|||.|.+..+.+ |+..|... ..++...-+...|=|-. ..-....++|.|
T Consensus 376 Dv~~~G~l~k~~~~~---~w-k~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~----~~~~~~~~~~~i 447 (478)
T PTZ00267 376 DVTHGGYLYKYSSDM---RW-KKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPE----VYSQKHPNQLVL 447 (478)
T ss_pred CcccceEEeccCCCc---ch-hhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccH----HhcCCCCceEEE
Confidence 445899999987643 34 99999999877765 44455432 23333222444444410 001123677888
Q ss_pred EecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 80 YNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 80 ~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
..+. .+++=+-|.|.+|.+.||+||+.|+
T Consensus 448 ~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 448 WFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 4443 4477777799999999999999995
No 101
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.95 E-value=0.22 Score=43.77 Aligned_cols=93 Identities=18% Similarity=0.289 Sum_probs=57.4
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEec--ceeehhccCCCC-------CCccceeEEecCCeEEeeCCcceecCeeeEEE
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQD-------NQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVL 77 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~-------~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~ 77 (500)
++||||..-.+.+|-+|- +.|+...+ +.+.|---.|.. -..+.+-+|. .|.|.. +-.-.-=|-|
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~--sc~~r~----~~~~dRRFCF 73 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLK--SCSRRK----TESIDKRFCF 73 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEeee--eccccc----cCCccceeeE
Confidence 689999999999998895 55555443 233221112221 1334333333 233332 2222345788
Q ss_pred EEEecCCCceeEEEeecCHHHHHHHHHHHH
Q 010823 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (500)
Q Consensus 78 ~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~ 107 (500)
.|-.+.-+ ..++|=|.|..+-..||+|+.
T Consensus 74 ei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 74 DVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 88776443 679999999999999999985
No 102
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=94.78 E-value=1.3 Score=38.55 Aligned_cols=128 Identities=12% Similarity=0.100 Sum_probs=70.9
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEec-CceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVD-GHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iD-d~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
+....+|+||+++|++++.|.. ..++|.+.+...+++...+ ..+. |. +. .+. ...+. .......+...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~~~~~~G~~--~~-~~---~~~---~~~~~-~~i~~~~p~~~ 71 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVE-NWPAWTPSVETVRLEGPPPAVGSS--FK-MK---PPG---LVRST-FTVTELRPGHS 71 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhh-hcccccCcceEEEEecCCCCCCcE--EE-Ee---cCC---CCceE-EEEEEecCCCE
Confidence 4566789999999999999975 5789999888877765431 1222 22 12 111 11111 12222222223
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCcc----chhhhhhHHHHHHHHHHH
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGV----GYLSMFQQHCLFQMLNSV 384 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwip----s~vn~~~~s~~~~~L~~l 384 (500)
+. ..+.. + .. ...+.|.++|.+. + +|++++... +.|-.. ..+...+....-..|++|
T Consensus 72 ~~--~~~~~----~----~~---~~~~~~~~~~~~~--~--~t~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l 132 (138)
T cd08862 72 FT--WTGPA----P----GI---SAVHRHEFEAKPD--G--GVRVTTSES--LSGPLAFLFGLFVGKKLRALLPEWLEGL 132 (138)
T ss_pred EE--EEecC----C----CE---EEEEEEEEEEcCC--C--cEEEEEEEE--eecchHHHHHHHHHHHHHhhHHHHHHHH
Confidence 32 22221 1 12 2246899999862 2 788987664 444332 223445556666777777
Q ss_pred hhh
Q 010823 385 ADE 387 (500)
Q Consensus 385 a~~ 387 (500)
++.
T Consensus 133 k~~ 135 (138)
T cd08862 133 KAA 135 (138)
T ss_pred HHH
Confidence 653
No 103
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.44 E-value=0.11 Score=45.96 Aligned_cols=99 Identities=9% Similarity=0.181 Sum_probs=63.4
Q ss_pred eEEEEeee-ccccceeeeeeEEEEecceeehhccCCCCC---CccceeEEe-cCCeEEeeCCc-ceecCeeeEEEEEEec
Q 010823 9 GWMVRYGR-RKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLI-DGNCRVEDRGL-KTHHGHMVYVLSVYNK 82 (500)
Q Consensus 9 Gwl~~~g~-~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~pi~~~~i-~~~~~V~~~g~-~~~~~~~~yv~~i~~~ 82 (500)
|||=-.=. +..+.+--+.||++|+|+-|..|+.-|.+. ..|.++--+ +--+||--.|. +....+.-|.|+|=-.
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg 82 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG 82 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence 77765411 222223338999999999999999999876 566655433 11334322221 1112355577777554
Q ss_pred CCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 83 KEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 83 ~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
.- =..-.|..++..|.+.|.+||++
T Consensus 83 ~~-vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 83 TQ-VENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred Cc-eeeEEEEecCHHHHHHHHHHHhc
Confidence 22 25668999999999999999975
No 104
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=94.34 E-value=0.021 Score=65.99 Aligned_cols=94 Identities=26% Similarity=0.304 Sum_probs=70.7
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEec--ceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLES--RLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g--~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
+||.||+.|.-=-++ ..|||||.. ..|+||-..- | ..|=+-+=+-+---|...|-+++-.+.+|-+. .
T Consensus 1636 ~eG~LyKrGA~lK~W---k~RwFVLd~~khqlrYYd~~e-d-t~pkG~IdLaevesv~~~~~k~vdekgffdlk-----t 1705 (1732)
T KOG1090|consen 1636 PEGYLYKRGAKLKLW---KPRWFVLDPDKHQLRYYDDFE-D-TKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-----T 1705 (1732)
T ss_pred cccchhhcchhhccc---ccceeEecCCccceeeecccc-c-ccccchhhhhhhhhhcccCccccCccceeeee-----h
Confidence 899999999888888 999999975 5788885433 2 36633333333344555677888888877654 5
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
..+.|.|-|.|+-+|-.|++.|+.+|
T Consensus 1706 t~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1706 TNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred hhHHHHHHhccchHHHHHHHHHHHhh
Confidence 56788999999999999999999874
No 105
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.22 E-value=3 Score=36.10 Aligned_cols=132 Identities=14% Similarity=0.182 Sum_probs=68.3
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcE
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsy 309 (500)
+....+|+||+++||+++.|.. ....|...+...+... +...+.+.+ ... .+. .+.+.....+...+.+..
T Consensus 2 v~~~~~i~ap~~~Vw~~~~d~~-~~~~w~~~~~~~~~~~-~~~G~~~~~-~~~---~~~---~~~~~~~~~v~~~~p~~~ 72 (141)
T cd07822 2 ISTEIEINAPPEKVWEVLTDFP-SYPEWNPFVRSATGLS-LALGARLRF-VVK---LPG---GPPRSFKPRVTEVEPPRR 72 (141)
T ss_pred eEEEEEecCCHHHHHHHHhccc-cccccChhheeEeccc-cCCCCEEEE-EEe---CCC---CCcEEEEEEEEEEcCCCE
Confidence 4567789999999999999864 5789987665444321 333444433 222 111 122322222222333333
Q ss_pred EEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccch----hhhhhHHHHHHHHHHHh
Q 010823 310 VVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY----LSMFQQHCLFQMLNSVA 385 (500)
Q Consensus 310 vI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~----vn~~~~s~~~~~L~~la 385 (500)
+.+....-+ .+... ....|.++|.++ + .|+|++.. +..|..... +...+....-.++..|+
T Consensus 73 -~~~~~~~~~-----~~~~~---~~~~~~~~~~~~--~--~T~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~ 137 (141)
T cd07822 73 -LAWRGGLPF-----PGLLD---GEHSFELEPLGD--G--GTRFVHRE--TFSGLLAPLVLLGLGRDLRAGFEAMNEALK 137 (141)
T ss_pred -eEEEecCCC-----CcEee---EEEEEEEEEcCC--C--cEEEEEee--EEEEEEhHHhhhhhHHHHhHhHHHHHHHHH
Confidence 333333211 11112 235799999853 2 78888764 444544322 23344455555555554
No 106
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=93.74 E-value=0.77 Score=42.69 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=71.9
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
.+.....|..+|+++|+++.|+. .+++.-+.|..++|+++=..+ -+--..+. ...=|.--.-|.... ++.
T Consensus 3 ~~~~s~lv~y~a~~mF~LV~dV~-~YP~FlP~C~~s~v~~~~~~~-l~A~l~V~------~k~i~e~F~Trv~~~--~~~ 72 (146)
T COG2867 3 QIERTALVPYSASQMFDLVNDVE-SYPEFLPWCSASRVLERNERE-LIAELDVG------FKGIRETFTTRVTLK--PTA 72 (146)
T ss_pred eeEeeeeccCCHHHHHHHHHHHH-hCchhccccccceEeccCcce-eEEEEEEE------hhheeeeeeeeeeec--Cch
Confidence 45666789999999999999985 588999999999999874332 11111111 011122222222221 222
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCc
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 365 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwi 365 (500)
-+|....++-|-. -+.|+|-++|+.+ ..|+|...+.-+.+..+
T Consensus 73 ~~I~~~l~~GPFk----------~L~~~W~F~pl~~----~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 73 RSIDMKLIDGPFK----------YLKGGWQFTPLSE----DACKVEFFLDFEFKSRL 115 (146)
T ss_pred hhhhhhhhcCChh----------hhcCceEEEECCC----CceEEEEEEEeeehhHH
Confidence 2444444433321 3578999999963 28999999999999877
No 107
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=93.10 E-value=0.48 Score=42.49 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=61.2
Q ss_pred eeeeEEEEecceeehhccCCCC---CCccceeEEecCCeEEeeCCccee---cCeeeEEEEEEecCCCceeEEEeecCHH
Q 010823 24 IHMRYFVLESRLLAYYKKKPQD---NQVPIKTLLIDGNCRVEDRGLKTH---HGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (500)
Q Consensus 24 ~~~Ryfvl~g~~l~~yk~~p~~---~~~pi~~~~i~~~~~V~~~g~~~~---~~~~~yv~~i~~~~~~~~~~~~~a~~~~ 97 (500)
.+-||..|=.+++=.=|++-.. .+--.|..+.-..++|+++...-. ..+--|.|.|-.+ ++...++|.|-|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 4678877777766656655322 123456666667888887742222 2357788888887 54567999999999
Q ss_pred HHHHHHHHHHHHH
Q 010823 98 EALIWKEKIELVI 110 (500)
Q Consensus 98 e~~~W~~a~~~a~ 110 (500)
+-.+||+||+-|+
T Consensus 99 ~K~kWm~al~~a~ 111 (116)
T cd01223 99 LRKKWLKALEMAM 111 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999995
No 108
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.25 E-value=0.4 Score=42.59 Aligned_cols=75 Identities=23% Similarity=0.395 Sum_probs=58.3
Q ss_pred eeeeEEEEecceeehhccCCCCC------CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHH
Q 010823 24 IHMRYFVLESRLLAYYKKKPQDN------QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (500)
Q Consensus 24 ~~~Ryfvl~g~~l~~yk~~p~~~------~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~ 97 (500)
.+.|||||=.+.|-+....|... ..|++.+.| |+.|| -+ +..++|.|--+. -..+.+-|.|.+
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v---~~lEd--~e----~~~~aFeI~G~l--i~~i~v~C~~~~ 96 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIV---TRLED--TE----ALKNAFEISGPL--IERIVVVCNNPQ 96 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCccceEEeeeecccccEE---echHh--cc----CccceEEEeccC--cCcEEEEeCCHH
Confidence 48999999999999999888542 588888777 33343 11 247889987654 367889999999
Q ss_pred HHHHHHHHHHHH
Q 010823 98 EALIWKEKIELV 109 (500)
Q Consensus 98 e~~~W~~a~~~a 109 (500)
|...|++-|+.-
T Consensus 97 e~~~Wl~hL~~~ 108 (111)
T cd01225 97 DAQEWVELLNAN 108 (111)
T ss_pred HHHHHHHHHHhh
Confidence 999999999864
No 109
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=91.20 E-value=5.5 Score=37.22 Aligned_cols=128 Identities=10% Similarity=0.063 Sum_probs=73.8
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCcE
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSY 309 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGsy 309 (500)
|.+.-.|.+||++|+++|.|.. .--.++..++-++..++.+.+ ...++ + .+++ ..|-.....-..
T Consensus 3 ~~G~f~V~~p~e~Vw~~L~dpe----~~a~ciPG~qs~e~~g~e~~~-~v~l~--i--g~l~-~~~~g~~~~~~v----- 67 (146)
T COG3427 3 YEGTFRVAAPPEAVWEFLNDPE----QVAACIPGVQSVETNGDEYTA-KVKLK--I--GPLK-GTFSGRVRFVNV----- 67 (146)
T ss_pred ccceEEecCCHHHHHHHhcCHH----HHHhhcCCcceeeecCCeEEE-EEEEe--e--ccee-EEEEEEEEEccc-----
Confidence 4556679999999999997742 334678888888888875544 34433 2 3455 333322111110
Q ss_pred EEEEEecCCCCCCCCCCeEEEEE--------ceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc----hhhhhhHHHH
Q 010823 310 VVLFRSREHENCGPQPGYVRAHV--------ESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG----YLSMFQQHCL 377 (500)
Q Consensus 310 vI~~~SV~hp~~Pp~~g~VRa~i--------~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips----~vn~~~~s~~ 377 (500)
.-|+..-.|+|.- ......+.|.. ..|+|+|.+..|.+|.+.. .+......+.
T Consensus 68 ----------~~~~~~~~i~g~G~~~~g~~~~~~~v~l~~~g-----~gt~v~w~~~~~~gg~laqlGsr~i~~~~~kli 132 (146)
T COG3427 68 ----------DEPPRSITINGSGGGAAGFADGTVDVQLEPSG-----EGTRVNWFADANVGGKLAQLGSRLIDSVARKLI 132 (146)
T ss_pred ----------cCCCcEEEEEeecccccceeeeeeEEEEEEcC-----CCcEEEEEEEccccHHHHHHhHHHHHHHHHHHH
Confidence 1122222333332 11123344443 2599999999999999844 4555555556
Q ss_pred HHHHHHHhhh
Q 010823 378 FQMLNSVADE 387 (500)
Q Consensus 378 ~~~L~~la~~ 387 (500)
-++.++++.+
T Consensus 133 ~~~~~~l~~~ 142 (146)
T COG3427 133 NRFFDCLSSE 142 (146)
T ss_pred HHHHHHHHHH
Confidence 6666666543
No 110
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=90.92 E-value=0.26 Score=55.59 Aligned_cols=94 Identities=33% Similarity=0.501 Sum_probs=71.4
Q ss_pred eeeEEEEe--eeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeE-EeeCCcceecCeeeEEEEEEecC
Q 010823 7 YEGWMVRY--GRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCR-VEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 7 ~eGwl~~~--g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~-V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
.+|-|+++ |+-++|...+.||||-|.+.-|. |-+.|. ..|+.+|-| .|++ ||-.--+++. +-.+|.|...-
T Consensus 567 k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls-~~Ksp~--~q~~~~Ipl-~nI~avEklee~sF~--~knv~qVV~~d 640 (800)
T KOG2059|consen 567 KEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELS-YAKSPG--KQPIYTIPL-SNIRAVEKLEEKSFK--MKNVFQVVHTD 640 (800)
T ss_pred cccceEeccccccchhhhhhhheEEEeccceeE-EecCCc--cCcccceeH-HHHHHHHHhhhhccC--CCceEEEEecC
Confidence 77888775 56678855569999999999999 555666 468888888 6665 4433344553 44567776663
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+++-+-|.|.-||..|+.||..+
T Consensus 641 ---rtly~Q~~n~vEandWldaL~kv 663 (800)
T KOG2059|consen 641 ---RTLYVQAKNCVEANDWLDALRKV 663 (800)
T ss_pred ---cceeEecCCchHHHHHHHHHHHH
Confidence 69999999999999999999988
No 111
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=90.02 E-value=0.97 Score=49.71 Aligned_cols=101 Identities=23% Similarity=0.243 Sum_probs=77.6
Q ss_pred CCceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCcccee-----EEecCCeEEeeCCcceecCeeeEEE
Q 010823 3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKT-----LLIDGNCRVEDRGLKTHHGHMVYVL 77 (500)
Q Consensus 3 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~-----~~i~~~~~V~~~g~~~~~~~~~yv~ 77 (500)
+.++|+|+||.++--|-++ .|=||||+--=|+ |..|-..+ .| |- -+=+.|.-|---||+.+.--.-|.|
T Consensus 315 ~~pei~GfL~~K~dgkKsW---Kk~yf~LR~SGLY-ys~K~tsk-~~-r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f 388 (622)
T KOG3751|consen 315 SPPEIQGFLYLKEDGKKSW---KKHYFVLRRSGLY-YSTKGTSK-EP-RHLQCLADLHSSNVYTGIGGRKKYKSPTDYGF 388 (622)
T ss_pred CCccccceeeecccccccc---eeEEEEEecCcce-EccCCCCC-Cc-hhhHHHHhcccCceEEeecchhccCCCCCceE
Confidence 4577999999999999999 9999999999998 54454444 33 22 2345677788889999988999999
Q ss_pred EEEecCCC--ceeEEE-eecCHHHHHHHHHHHHHH
Q 010823 78 SVYNKKEK--YHRITM-AAFNIQEALIWKEKIELV 109 (500)
Q Consensus 78 ~i~~~~~~--~~~~~~-~a~~~~e~~~W~~a~~~a 109 (500)
+|--.+.. .+-+|| -|++-+--..|+-||+-+
T Consensus 389 ~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~ 423 (622)
T KOG3751|consen 389 CIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLL 423 (622)
T ss_pred EeeeccccCcccceeeeecccchhHHHHHHHHHHH
Confidence 99766533 355665 456777778999999977
No 112
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.25 E-value=15 Score=32.53 Aligned_cols=108 Identities=15% Similarity=0.092 Sum_probs=62.2
Q ss_pred EEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCce---eEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 232 AVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHT---AILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 232 avgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~t---dIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
....|+||+++||+++.|.+ .-+.|.+.+...+++..-++.. ..+...+.. ++ +. +.-.......+.+.
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~-~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~--~~--~~---~~w~~~it~~~p~~ 74 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPD-NLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRH--FG--IP---QRWTTEITEVEPPR 74 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcc-hHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEe--cC--Cc---eEEEEEEEEEcCCC
Confidence 45679999999999998865 5779999999988886433221 223344331 22 11 11111111223344
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCC
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKG 363 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkG 363 (500)
. +...++. |-++ ....-+.++|.+ + +|.||+.+..++.|
T Consensus 75 ~-f~~~~~~--------G~~~--~w~h~~~f~~~~---~--gT~vt~~v~~~~p~ 113 (137)
T cd07820 75 R-FVDEQVS--------GPFR--SWRHTHRFEAIG---G--GTLMTDRVEYRLPL 113 (137)
T ss_pred e-EEEEecc--------CCch--hCEEEEEEEECC---C--ceEEEEEEEEeCCc
Confidence 3 3333441 1111 123356788875 2 69999999999864
No 113
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=88.27 E-value=1.1 Score=49.81 Aligned_cols=96 Identities=20% Similarity=0.305 Sum_probs=63.7
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhc---cCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYK---KKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK 83 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk---~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~ 83 (500)
+||-++++-.++-.. +.||++|=...+-|-| +.|..+ .-++..+=-.+|-|-+ ..++.-.-.|-+.-
T Consensus 274 KEG~l~Kis~k~~~~---qeRylfLFNd~~lyc~~r~~~~~~k-~~~r~~~s~~~~~v~~----~~~~~~~~tF~~~G-- 343 (623)
T KOG4424|consen 274 KEGQLQKISAKNGTT---QERYLFLFNDILLYCKPRKRLPGSK-YEVRARCSISHMQVQE----DDNEELPHTFILTG-- 343 (623)
T ss_pred hccceeeeeccCCCc---ceeEEEEehhHHHhhhhhhhcccce-eccceeeccCcchhcc----cccccCCceEEEec--
Confidence 899999998886666 9999999988776433 223322 1112221113333322 33332233333332
Q ss_pred CCceeEEEeecCHHHHHHHHHHHHHHHhhh
Q 010823 84 EKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (500)
Q Consensus 84 ~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~ 113 (500)
+.+.++|.|.+.+|...|+.+|..|||.|
T Consensus 344 -~~r~vel~a~t~~ek~eWv~~I~~~Id~~ 372 (623)
T KOG4424|consen 344 -KKRGVELQARTEQEKKEWVQAIQDAIDKH 372 (623)
T ss_pred -ccceEEeecCchhhHHHHHHHHHHHHHHH
Confidence 58899999999999999999999999987
No 114
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=88.14 E-value=1.1 Score=49.12 Aligned_cols=50 Identities=24% Similarity=0.215 Sum_probs=40.1
Q ss_pred CCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 57 GNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 57 ~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
..|=|-. +....+.-|||.+.++. .+++-|-|.+.+|.+.||++|++++.
T Consensus 441 ~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 441 DVFPVPS---KYTGSNAAHVFAVAFKT--GRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred ccccccH---HhhCCCCCcEEEEEecC--CcEEEEecCCchhHHHHHHHHHHhcC
Confidence 4555552 34445678999999983 68999999999999999999999953
No 115
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=87.51 E-value=2.1 Score=49.62 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=70.0
Q ss_pred eEEEEeeecc-------ccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCccee-cCeeeEEEEEE
Q 010823 9 GWMVRYGRRK-------IGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTH-HGHMVYVLSVY 80 (500)
Q Consensus 9 Gwl~~~g~~~-------~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~-~~~~~yv~~i~ 80 (500)
|+||.--++. -++.=+.++|-||.|-.|+||..... -.|...|-|++=.-|.-.=-+++ +-+++|+|.||
T Consensus 496 ~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S--~tP~~lI~~~Eivclav~~pd~~pn~~~~f~fE~~ 573 (1186)
T KOG1117|consen 496 GFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKS--TTPNGLININEIVCLAVHPPDTYPNTGFIFIFEIY 573 (1186)
T ss_pred ceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCC--CCCCceeeccceEEEeecCCCCCCCcCceeEEEEe
Confidence 8888754443 34455578999999999997754433 37877777655433332223333 44799999999
Q ss_pred ecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 81 NKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 81 ~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
=. .++-+.||+++++++.+|-+|+-.+
T Consensus 574 l~--~er~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 574 LP--GERVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred ec--ccceEEeecccHHHHHHHHHHHHHh
Confidence 76 4689999999999999999998754
No 116
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=86.71 E-value=25 Score=32.11 Aligned_cols=119 Identities=11% Similarity=-0.008 Sum_probs=73.0
Q ss_pred EEEEEEecccHHHHHHHHhcCCC-CccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCCc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDG-TRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 308 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~-~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDGs 308 (500)
+..+..|+||+++|++++.+.+. ....|-+.++.+++++-=++--.|..+.+.. .. .++ .+.-|.. ..++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~----~~-~~~-~~kE~l~-~~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGP----GG-KVK-YVKERID-AVDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcC----CC-cce-EEEEEEE-EEcccc
Confidence 56677899999999999998752 3467888888888876422334454555432 11 111 2222222 224555
Q ss_pred EEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCC
Q 010823 309 YVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGW 364 (500)
Q Consensus 309 yvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGw 364 (500)
..+.++-++-+... -.-....+.+.+.|... + .|.|+|.+..++..-
T Consensus 76 ~~~~y~vveg~~~~-----~~~~~y~~t~~v~~~~~--~--~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLK-----DGYKSYKVEIKFVPKGD--G--GCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEeccccc-----CceEEEEEEEEEEECCC--C--CEEEEEEEEEEECCC
Confidence 66666666432111 01234467788889842 3 799999999997764
No 117
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=86.21 E-value=23 Score=31.16 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=24.5
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~ 260 (500)
+....+|+|||+.||+++.|.. ..++|++.
T Consensus 2 i~~~~~i~ap~e~Vw~~l~d~~-~~~~W~~~ 31 (144)
T cd07825 2 VSVSRTVDAPAEAVFAVLADPR-RHPEIDGS 31 (144)
T ss_pred eEEEEEEeCCHHHHHHHHhCcc-ccceeCCC
Confidence 3456689999999999998864 68899863
No 118
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=86.14 E-value=0.76 Score=53.05 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=64.0
Q ss_pred ceeeeeeEEEEecceeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHH
Q 010823 21 RSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQ 97 (500)
Q Consensus 21 ~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~ 97 (500)
-.++|-|||||.|..|..||+....+ +-||.+..+=-|++ ++..--..|.|++| .+ -+++-+-|.+..
T Consensus 1048 g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gvk------kklKpPt~wg~T~i--~e-khh~~l~cd~s~ 1118 (1186)
T KOG1117|consen 1048 GNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGVK------KKLKPPTSWGFTAI--SE-KHHWYLCCDSSS 1118 (1186)
T ss_pred CCccceEEEEecCcEEEEeehhhccccccccccccceEEeccc------cccCCCCccceeee--ee-cceEEEecCCcc
Confidence 34679999999999999999988766 89999888733332 23333689999999 33 347888999999
Q ss_pred HHHHHHHHHHHH
Q 010823 98 EALIWKEKIELV 109 (500)
Q Consensus 98 e~~~W~~a~~~a 109 (500)
+.-.|+-.+--|
T Consensus 1119 ~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1119 EQTEWFTSIFKA 1130 (1186)
T ss_pred ccchhhhhhhhh
Confidence 999999998877
No 119
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=84.62 E-value=25 Score=30.30 Aligned_cols=30 Identities=10% Similarity=0.139 Sum_probs=23.9
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~ 260 (500)
+....+|+||+++||++|.|.+ .-+.|.+.
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~-~~~~w~~~ 31 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPE-LLAQWFGP 31 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHH-HHHhhhCc
Confidence 4556789999999999998754 46789875
No 120
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.41 E-value=10 Score=33.92 Aligned_cols=86 Identities=17% Similarity=0.286 Sum_probs=55.1
Q ss_pred eeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCC--ceeEEEeecCHHHHHH
Q 010823 25 HMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK--YHRITMAAFNIQEALI 101 (500)
Q Consensus 25 ~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~--~~~~~~~a~~~~e~~~ 101 (500)
.+|.|.-+--+|+.=..++... ..|. -+.-..+.+.+.|.+-+-++...-|.|..+... .+.+.+=|.|+++-..
T Consensus 26 eR~vFLFe~~lvfsk~~~~~~~~~~~~--Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~ 103 (114)
T cd01232 26 ERRVFLFEQSIIFAKEVKKKKQFGNPK--YIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQE 103 (114)
T ss_pred eeEEEEeeceEEEEEEeccCCCCCcee--EEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHH
Confidence 6777777777776322222111 1221 122233344555555555556778888887763 5899999999999999
Q ss_pred HHHHHHHHHhh
Q 010823 102 WKEKIELVIDQ 112 (500)
Q Consensus 102 W~~a~~~a~~~ 112 (500)
|+..|.++++|
T Consensus 104 W~~~I~~il~~ 114 (114)
T cd01232 104 WVKKIREILQE 114 (114)
T ss_pred HHHHHHHHhhC
Confidence 99999998653
No 121
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=79.93 E-value=3.2 Score=36.99 Aligned_cols=101 Identities=18% Similarity=0.330 Sum_probs=66.4
Q ss_pred ceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCC--cceecCeeeEEEEEEec
Q 010823 5 VVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRG--LKTHHGHMVYVLSVYNK 82 (500)
Q Consensus 5 ~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g--~~~~~~~~~yv~~i~~~ 82 (500)
..++|+++++|- .+--+| ++|||=|=.|.|..|-.... + ..-.++.+ .|+|.. -..+.|..--++.|-|
T Consensus 3 cIvhGyi~KLGG-PFls~W-Q~Ry~~LfPNRLE~~~~~~~-~--~~eLi~M~---~i~~V~~e~~~iK~~~CI~ik~k~- 73 (116)
T cd01240 3 CIVHGYIKKLGG-PFLSQW-QTRYFKLYPNRLELYGESEA-N--KPELITMD---QIEDVSVEFQQIKEENCILLKIRD- 73 (116)
T ss_pred eEEeeehhhhCC-HHHHHH-HHHHheeCcceeeecccccc-c--CCcEEEee---hhhhcchhheeeccCceEEEEEcC-
Confidence 458999999885 455567 99999999999997633222 1 11222221 122211 1223455555555544
Q ss_pred CCCceeEEEeecCHHHHHHHHHHHHHHHhhhhccc
Q 010823 83 KEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117 (500)
Q Consensus 83 ~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~~ 117 (500)
..++-|-+.+--+...|++.|+.|-...|+-.
T Consensus 74 ---~~k~vlt~~d~i~l~qW~~elr~a~r~Sq~ll 105 (116)
T cd01240 74 ---EKKIVLTNSDEIELKQWKKELRDAHRESQQLL 105 (116)
T ss_pred ---CceEEEecCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67888889999999999999999977766643
No 122
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=75.18 E-value=15 Score=31.53 Aligned_cols=83 Identities=22% Similarity=0.283 Sum_probs=48.4
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecc-eeehhccCCCCCCccceeEEecC-CeEEeeCCcceecCeeeEEEEEEecCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESR-LLAYYKKKPQDNQVPIKTLLIDG-NCRVEDRGLKTHHGHMVYVLSVYNKKE 84 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~-~l~~yk~~p~~~~~pi~~~~i~~-~~~V~~~g~~~~~~~~~yv~~i~~~~~ 84 (500)
+.|-+.+ +.|+ |.++|=|+|... .|.|+ +|... +-=+-+.+.+ +++|+ ..+++.++| ..
T Consensus 3 ~~g~v~K----r~gl-f~kkR~LiLTd~PrL~yv--dp~~~-~~KgeIp~s~~~l~v~-----~~~~~~F~I------~T 63 (89)
T cd01262 3 KIGAVKK----RKGL-FAKKRQLILTNGPRLIYV--DPVKK-VVKGEIPWSDVELRVE-----VKNSSHFFV------HT 63 (89)
T ss_pred eeeeeee----hhcc-ccceeeEEEecCceEEEE--cCCcC-eEEeEecccccceEEE-----EecCccEEE------EC
Confidence 5666666 5566 559999999753 33333 56543 1113333444 56666 333333333 24
Q ss_pred CceeEEEeecCHHHHHHHHHHHHHH
Q 010823 85 KYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 85 ~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.++.|-|- .-...|..|++|++.+
T Consensus 64 p~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 64 PNKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CCceEEEE-CCCCCHHHHHHHHHHH
Confidence 46677663 3346899999999987
No 123
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=73.07 E-value=15 Score=32.20 Aligned_cols=85 Identities=12% Similarity=0.142 Sum_probs=47.0
Q ss_pred eeeeEEEE--ecceeehhccCCCCC----CccceeEEecCCeEEeeCCcceec--CeeeEEEEEEecCC-CceeEEEeec
Q 010823 24 IHMRYFVL--ESRLLAYYKKKPQDN----QVPIKTLLIDGNCRVEDRGLKTHH--GHMVYVLSVYNKKE-KYHRITMAAF 94 (500)
Q Consensus 24 ~~~Ryfvl--~g~~l~~yk~~p~~~----~~pi~~~~i~~~~~V~~~g~~~~~--~~~~yv~~i~~~~~-~~~~~~~~a~ 94 (500)
..+|+|-| ++..|.+...++... ..=||.+-.|..+..=..--+... -..-..|+|+...+ ..+.+-|-|.
T Consensus 21 ~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L~lVA~ 100 (115)
T cd01248 21 ERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSLDLVAP 100 (115)
T ss_pred eeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEEEEEEC
Confidence 35688888 578887544343111 122333333333321110000000 13345677766543 3567999999
Q ss_pred CHHHHHHHHHHHHH
Q 010823 95 NIQEALIWKEKIEL 108 (500)
Q Consensus 95 ~~~e~~~W~~a~~~ 108 (500)
|.++|..|+..|..
T Consensus 101 s~~~a~~W~~gL~~ 114 (115)
T cd01248 101 SEEEAKTWVSGLRK 114 (115)
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999864
No 124
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=72.40 E-value=1.1 Score=51.60 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=73.6
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCc
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~ 86 (500)
-.|.|+++=.|+=|+ +|=|.|-..-+|++||...+ +.|+-++.|.+ ..|.-- ++.-.=+.=|||.+-++ +
T Consensus 926 Lsg~Llrkfknssgw---qkLwvvft~fcl~fyKS~qD--~~~laslPlLg-ysvs~P-~~~d~i~K~~vfkl~fk---~ 995 (1036)
T KOG3531|consen 926 LSGYLLRKFKNSSGW---QKLWVVFTNFCLFFYKSHQD--SEPLASLPLLG-YSVSIP-AEPDPIQKDYVFKLKFK---S 995 (1036)
T ss_pred hhHHHHHHhhccccc---eeeeeeecceeeEeeccccc--ccccccccccc-cccCCC-CCCCCcchhheeeeehh---h
Confidence 467888888888899 99999999999999998776 46777777744 455422 22222245699999876 7
Q ss_pred eeEEEeecCHHHHHHHHHHHHHH
Q 010823 87 HRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 87 ~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
++|-|+|++.---++||+.|+.|
T Consensus 996 hvyffraes~yt~~rw~evi~~a 1018 (1036)
T KOG3531|consen 996 HVYFFRAESYYTFERWMEVITDA 1018 (1036)
T ss_pred hHHHHhhhhhhhhhhHHHHhhcC
Confidence 89999999999999999999999
No 125
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=68.09 E-value=2.6 Score=48.98 Aligned_cols=38 Identities=29% Similarity=0.553 Sum_probs=29.6
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN 46 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~ 46 (500)
..+||||+-..-..|. ++|||||.+-+|.||+..-.++
T Consensus 78 ~~~g~l~k~~n~~~~~---~~r~f~l~~g~ls~~~~~~~~~ 115 (799)
T KOG1737|consen 78 SLEGILLKWRNYSKGP---SSRWFVLSGGLLSYYFDNSFSK 115 (799)
T ss_pred cccceeeccccccCCc---ccceEEecCcceeeeccCCccc
Confidence 3789999954444444 9999999999999998766555
No 126
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=67.65 E-value=83 Score=28.04 Aligned_cols=112 Identities=19% Similarity=0.251 Sum_probs=64.8
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcccceeE--EEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcCCC
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGS--LVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 307 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~--vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~eDG 307 (500)
||....+++|++++|+.|.+. ...|-.-...+ .+.+| .... |... ++.+--+.+....-..+.
T Consensus 1 MkI~~~l~v~a~~ff~~l~~s----~~~DI~~~tgk~~~~~~L-~G~~--Y~K~--------~~~~~~~~v~It~~~~~~ 65 (120)
T PF11687_consen 1 MKISKTLNVSAEEFFDYLIDS----LLYDIKQATGKKLPVKQL-KGFS--YQKK--------FKNKREAKVKITEYEPNK 65 (120)
T ss_pred CeEEEEecCCHHHHHHHHHHH----HHHHHHHHcCCCCChhhc-CCcE--EEEE--------cCCCCEEEEEEEEEcCCC
Confidence 567778999999999999763 12221111111 12233 2222 2221 122224444444334566
Q ss_pred cEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccchhhhhh
Q 010823 308 SYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGYLSMFQ 373 (500)
Q Consensus 308 syvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips~vn~~~ 373 (500)
.|.+.+.|-.- ...-.|.|+|++. | .|.|+|-=.....++...+-++++
T Consensus 66 ~Y~~~~~s~~~-------------~~~i~Y~i~~~~~--~--~~~v~y~E~~~~~~~~~~~n~~l~ 114 (120)
T PF11687_consen 66 RYAATFSSSRG-------------TFTISYEIEPLDD--G--SIEVTYEEEYESKGFFQKLNNKLM 114 (120)
T ss_pred EEEEEEEecCC-------------CEEEEEEEEECCC--C--cEEEEEEEEEccCCHHHHHHHHHH
Confidence 77777666421 1244799999974 3 799999999999887766555444
No 127
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=65.80 E-value=1.2e+02 Score=29.64 Aligned_cols=126 Identities=13% Similarity=0.177 Sum_probs=79.1
Q ss_pred eEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEc----
Q 010823 229 AMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRN---- 304 (500)
Q Consensus 229 ~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~---- 304 (500)
......+|++|++.|+++-.|+. .-+.|++.+.+.+|+ |++-. .+... +| ......|.-.
T Consensus 71 ~v~~~V~I~kPae~vy~~W~dLe-~lP~~Mkhl~SVkVl---ddkrS--rW~~~---ap-------~g~~v~Wea~it~d 134 (217)
T COG5637 71 EVEVQVTIDKPAEQVYAYWRDLE-NLPLWMKHLDSVKVL---DDKRS--RWKAN---AP-------LGLEVEWEAEITKD 134 (217)
T ss_pred EEEEEEEeCChHHHHHHHHHhhh-hhhHHHHhhceeecc---CCCcc--ceeEc---CC-------CCceEEEeehhhcc
Confidence 34445579999999999999985 688999888877765 44442 45444 33 1223345432
Q ss_pred CCCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCccc-hhhhhhH----HHHHH
Q 010823 305 DDGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVG-YLSMFQQ----HCLFQ 379 (500)
Q Consensus 305 eDGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwips-~vn~~~~----s~~~~ 379 (500)
..|. .|...|++-... +..|.|| +.+.++ .+|.|...+.-.|-|++-. .+++++. +...+
T Consensus 135 ~~~e-~I~W~Sl~Ga~v-~NsG~Vr---------F~~~pg----~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~ 199 (217)
T COG5637 135 IPGE-RIQWESLPGARV-ENSGAVR---------FYDAPG----DSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQD 199 (217)
T ss_pred CCCc-EEeeecCCCCcC-CCCccEE---------eeeCCC----CceEEEEEEEecCCccHHHHHHHHHhccchHHHHHH
Confidence 3343 578888843323 4667777 666653 2688888888888777743 3466554 33444
Q ss_pred HHHHHh
Q 010823 380 MLNSVA 385 (500)
Q Consensus 380 ~L~~la 385 (500)
-|++-+
T Consensus 200 DL~RFk 205 (217)
T COG5637 200 DLERFK 205 (217)
T ss_pred HHHHHH
Confidence 455554
No 128
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=64.06 E-value=4.8 Score=46.99 Aligned_cols=99 Identities=12% Similarity=0.234 Sum_probs=68.8
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCc
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKY 86 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~ 86 (500)
++|.+|+.-.+ +-..| .+|||-+.++.+-|++|--... .+.+...-+|-|...-.++ .--|-|.|-+ ++
T Consensus 276 ~~~~l~~k~~~-~~~tw-~r~~f~~q~~~l~~~~r~~~~~---~~~~~dL~~csvk~~~~~~---drr~CF~iiS---~t 344 (785)
T KOG0521|consen 276 MEGYLRKKASN-ASKTW-KRRWFSIQDGQLGYQHRGADAE---NVLIEDLRTCSVKPDAEQR---DRRFCFEIIS---PT 344 (785)
T ss_pred hhhhhhhhccc-chhhH-Hhhhhhhhcccccccccccccc---ccccccchhccccCCcccc---cceeeEEEec---CC
Confidence 55556653333 33344 7799999888888776554322 1344444567776543433 3568899888 78
Q ss_pred eeEEEeecCHHHHHHHHHHHHHHHhhhhcc
Q 010823 87 HRITMAAFNIQEALIWKEKIELVIDQHQES 116 (500)
Q Consensus 87 ~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~ 116 (500)
+.+.+=|+|..+-..||++++..|.+.-.+
T Consensus 345 ks~~lQAes~~d~~~Wi~~i~nsi~s~l~~ 374 (785)
T KOG0521|consen 345 KSYLLQAESEKDCQDWISALQNSILSALNS 374 (785)
T ss_pred cceEEecCchhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998887443
No 129
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.91 E-value=58 Score=29.97 Aligned_cols=90 Identities=12% Similarity=0.194 Sum_probs=59.3
Q ss_pred eeeEEEEecceeehhccC--CCCC-CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHHH
Q 010823 25 HMRYFVLESRLLAYYKKK--PQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALI 101 (500)
Q Consensus 25 ~~Ryfvl~g~~l~~yk~~--p~~~-~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~ 101 (500)
.++-|.-+.-+|++ |+. +.+. ..|. =+.=..+.+.+.|..-+-++...-|.|..+. ....|.+=|.|++.-..
T Consensus 31 eRhVFLFE~~viF~-K~~~~~~~~~~~p~--Y~yK~~ikls~lglte~v~gd~~kFeiw~~~-~~~~yilqA~t~e~K~~ 106 (133)
T cd01227 31 QRHIFLHEKAVLFC-KKREENGEGEKAPS--YSFKQSLKMTAVGITENVKGDTKKFEIWYNA-REEVYILQAPTPEIKAA 106 (133)
T ss_pred eeEEEEecceEEEE-EEeccCCCCCccee--EEEeeeEEeecccccccCCCCccEEEEEeCC-CCcEEEEEcCCHHHHHH
Confidence 34555556666664 333 1110 1331 2222444555666655555567788888875 46899999999999999
Q ss_pred HHHHHHHHHhhhhcccc
Q 010823 102 WKEKIELVIDQHQESQV 118 (500)
Q Consensus 102 W~~a~~~a~~~~~~~~~ 118 (500)
|++.|.+.+.+|.+..-
T Consensus 107 Wv~~I~~iL~~Q~~~lk 123 (133)
T cd01227 107 WVNEIRKVLTSQLQACK 123 (133)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999876533
No 130
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=60.60 E-value=1.8e+02 Score=28.79 Aligned_cols=120 Identities=9% Similarity=0.080 Sum_probs=76.9
Q ss_pred ceEEEEEEeccc--HHHHHHHHhcCCCCccchhcccceeEEEEEecCceeEEEEEEecccCCCcCCCceEEEEEEEEEcC
Q 010823 228 RAMKAVGVVEAS--CEEIFELVMSMDGTRYEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND 305 (500)
Q Consensus 228 ~~~KavgvV~a~--pe~VfevL~d~d~~R~eWD~~~~~~~vVE~iDd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~e 305 (500)
.+-|..-.|.-| -.+|...|+|.+ .-...|..+..++++...+++..++.++++... .-..|=|-.|..--+..
T Consensus 59 dI~K~~~~I~~pnkYneIIN~LWdpn-~~~~fn~~~ikgki~RvYnpNLvmiqqry~~~~---~~~~~YfyaLa~Kv~iS 134 (208)
T TIGR01599 59 IIGKIHLTIQDPNKYDAIIKTLWDFN-DNKKFGRKFIKGKVVRVYSPNLIMIQQRYKDAS---GSPNKYFYALATKVKVS 134 (208)
T ss_pred EEEEEEEEecCchhHHHHHHHHhccc-cccCCCchheeeeEEEEeCCCeEEEEeecCCCC---CCcceEEeEeeeeeecC
Confidence 455777777643 889999999865 355789999999999999999999888876422 12233343343322233
Q ss_pred CCcEEEEEEecCCCCC-CC-CCC--------------------------eEEEEEceeEEEEEeCCCCCCCCceEEEEE
Q 010823 306 DGSYVVLFRSREHENC-GP-QPG--------------------------YVRAHVESGGFNISPLKPRNGRPRTQVQHL 356 (500)
Q Consensus 306 DGsyvI~~~SV~hp~~-Pp-~~g--------------------------~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i 356 (500)
..+-+|+..|..-... |. ++. .-...+..+||+|+.-.. ...|||+
T Consensus 135 ed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d-----~v~iTyi 208 (208)
T TIGR01599 135 EDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD-----NIDITYV 208 (208)
T ss_pred CCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC-----cEEEEEC
Confidence 4455677777642221 11 111 234567789999997752 5777774
No 131
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=57.46 E-value=21 Score=32.73 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=30.2
Q ss_pred cCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 70 ~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.++.+|-|+|-.-.-+...++|=|.|..+-.+|+++|+++
T Consensus 95 ~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 95 DSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp -TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 3478999999666655566999999999999999999987
No 132
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=56.28 E-value=9.9 Score=40.22 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=67.1
Q ss_pred CceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCCCccceeEEecC----CeEE-eeCCcceecCeeeEEEE
Q 010823 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDG----NCRV-EDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 4 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~~~pi~~~~i~~----~~~V-~~~g~~~~~~~~~yv~~ 78 (500)
.+.|-||+--.--+++..+-.++||+.|+|..++.|-.-|..--.=.|..+.=. -|+| .|- -.-.+-.|-|.
T Consensus 280 qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kds---d~~D~R~~CF~ 356 (505)
T KOG3549|consen 280 QIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDS---DTVDSRQHCFL 356 (505)
T ss_pred eEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccc---cccccccceEE
Confidence 456999999888888988888999999999999977766643200001110000 0111 110 11224567788
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
|-... ..-.-|..+...|.++|-++|+.|+
T Consensus 357 ~qs~~--ge~~yfsVEl~seLa~wE~sfq~At 386 (505)
T KOG3549|consen 357 LQSSG--GEPRYFSVELRSELARWENSFQAAT 386 (505)
T ss_pred EEcCC--CCceEEEEehhhHHHHHHHHHhhHH
Confidence 87654 3444578899999999999999993
No 133
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=55.53 E-value=6.2 Score=44.54 Aligned_cols=94 Identities=21% Similarity=0.396 Sum_probs=64.9
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecce-----eehhccCCCCCCccceeEEecCCeEEee----CCcceecCeeeEEE
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRL-----LAYYKKKPQDNQVPIKTLLIDGNCRVED----RGLKTHHGHMVYVL 77 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~-----l~~yk~~p~~~~~pi~~~~i~~~~~V~~----~g~~~~~~~~~yv~ 77 (500)
+.|++|-+|+|---+ | .+|||||---- +-.|.++.. +|---+-+ .|..|.- -|.+ -|+++
T Consensus 466 hsgylyaig~nvwkr-w-kkrffvlvqvsqytfamcsyrekka---epqel~ql-dgytvdytdp~pglq--gg~~f--- 534 (1218)
T KOG3543|consen 466 HSGYLYAIGRNVWKR-W-KKRFFVLVQVSQYTFAMCSYREKKA---EPQELIQL-DGYTVDYTDPSPGLQ--GGKHF--- 534 (1218)
T ss_pred cceeehhhhhHHHHH-h-HhhEEEEEEhhhhhhHhhhhhhccc---ChHHHhhc-cCeeeccCCCCCccc--cchHH---
Confidence 899999999986554 4 89999997421 112555543 55555556 4444431 1222 23333
Q ss_pred EEEecCCCceeEEEeecCHHHHHHHHHHHHHHHhhh
Q 010823 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQH 113 (500)
Q Consensus 78 ~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~ 113 (500)
+|.--..+.+.||-.+-+|---|++|+-.|-.|.
T Consensus 535 --fnavkegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 535 --FNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred --HHHhccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 5777779999999999999999999999997664
No 134
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=50.08 E-value=34 Score=38.68 Aligned_cols=100 Identities=20% Similarity=0.323 Sum_probs=67.7
Q ss_pred CCceeeeEEEEeeeccccceeeeeeEEEE--ecceeehh--ccCCCCCCccceeEEecCCeEEeeCCcceecCeeeEEEE
Q 010823 3 SKVVYEGWMVRYGRRKIGRSFIHMRYFVL--ESRLLAYY--KKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 3 ~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl--~g~~l~~y--k~~p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~ 78 (500)
++..+||+||.-..++||-+| -|-|-|- +.+.+.|- -.+|..++-|.-+..+-.|.|=- -+++ ..=|-|.
T Consensus 263 ~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRk---tdSI--dKRFCFD 336 (812)
T KOG1451|consen 263 TPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRK---TDSI--DKRFCFD 336 (812)
T ss_pred CCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCc---cccc--ccceeee
Confidence 455699999999999999988 5555553 23444432 22333335566667775555422 2333 4446666
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
|.-- +....++|-|-|-++-.-||+|..-|
T Consensus 337 ve~~-erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 337 VEVE-ERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred eeec-ccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 6544 66889999999999999999998876
No 135
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=48.73 E-value=13 Score=42.62 Aligned_cols=97 Identities=13% Similarity=0.320 Sum_probs=62.7
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC-CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCC
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN-QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEK 85 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~-~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~ 85 (500)
..|++-..+ .++|+ -.+||||++.-...||+ .|.+. +.|-..+=|...|..+- +..-|.|-+- ..
T Consensus 251 kSgy~~~~~-s~~k~--lkrr~~v~k~gqi~~y~-~~~~~~~~p~s~~d~~s~~~~~~-------~~~s~~fqli---~~ 316 (936)
T KOG0248|consen 251 KSGYWTQLT-SRIKS--LKRRYVVFKNGQISFYR-KHNNRDEEPASKIDIRSVTKLEQ-------QGAAYAFQLI---TS 316 (936)
T ss_pred cccchhcch-HHHHH--HHhHheeeccceEEEEE-cCCCccccccCcccccccceeec-------cchhHHhhhh---hh
Confidence 556666666 34443 27788888877777665 44444 45533333434444443 2333444432 34
Q ss_pred ceeEEEeecCHHHHHHHHHHHHHHHhhhhccc
Q 010823 86 YHRITMAAFNIQEALIWKEKIELVIDQHQESQ 117 (500)
Q Consensus 86 ~~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~~ 117 (500)
.+++.+.+.+.--.+.|+.-|+.+|+-++...
T Consensus 317 t~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 317 TDKMNFMTESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred ceeEEEeccChhhhhhhHHHHHHHHHHHhccc
Confidence 78999999999999999999999999877653
No 136
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=47.84 E-value=18 Score=39.88 Aligned_cols=88 Identities=19% Similarity=0.356 Sum_probs=48.8
Q ss_pred eeeEEEEeeeccccceee---eeeEEEEecceeehhccCCCCC-----CccceeEEecCCeEEeeCCcceecCeeeEEEE
Q 010823 7 YEGWMVRYGRRKIGRSFI---HMRYFVLESRLLAYYKKKPQDN-----QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLS 78 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~---~~Ryfvl~g~~l~~yk~~p~~~-----~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~ 78 (500)
-.||+=+.|.=.-=..|+ +.|||||+.+-|.|||.+-... ..-+.+++|..+ .-.---|.
T Consensus 20 ~dgw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ah------------EfDe~rfd 87 (611)
T KOG1739|consen 20 SDGWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAH------------EFDECRFD 87 (611)
T ss_pred cCCchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccc------------cchhheee
Confidence 457874444433322222 6999999999999999876443 344444555222 11112222
Q ss_pred EEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 79 VYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 79 i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
|.-. .....+-|...+.-..|+++|+.-
T Consensus 88 Isvn---~nv~~lra~~~~hr~~w~d~L~wm 115 (611)
T KOG1739|consen 88 ISVN---DNVWYLRAQDPDHRQQWIDALEWM 115 (611)
T ss_pred eEec---cceeeehhcCcHHHHHHHHHHHHH
Confidence 2211 334555566666666677776654
No 137
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=46.69 E-value=16 Score=41.10 Aligned_cols=99 Identities=19% Similarity=0.413 Sum_probs=57.2
Q ss_pred CceeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCCCC---CccceeEEecCCeEEeeC-Cc-ceecCeeeEEEE
Q 010823 4 KVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDR-GL-KTHHGHMVYVLS 78 (500)
Q Consensus 4 ~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~-g~-~~~~~~~~yv~~ 78 (500)
+.-+||||+|+-..---+ .+-|.-|..|.+.+|...-..+ +.|+--| +.|+-+ |- -.-.|...|-|.
T Consensus 412 t~~kEGWmvHyt~~d~lR---krHYWrldsk~itlfqn~s~~ryYkeIPLsEI-----l~v~~~~~~~~vp~~~~phcFE 483 (888)
T KOG4236|consen 412 TKLKEGWMVHYTSKDNLR---KRHYWRLDSKCITLFQNESTNRYYKEIPLSEI-----LSVSSNNGFSLVPAGTNPHCFE 483 (888)
T ss_pred hhhhcceEEEEechhhhh---hhhhheeccceeEeeecCCCceeEEeecHHHh-----heeeccCCcccCCCCCCCceEE
Confidence 344899999997766444 5668999999998888776655 6665433 233322 11 112344455554
Q ss_pred E------EecCCC-ce-eEEEeecCHHHHHHHHHHHHHHH
Q 010823 79 V------YNKKEK-YH-RITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 79 i------~~~~~~-~~-~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
| |.-.+. +. .+-=.-...+-|..|--|+++|+
T Consensus 484 I~T~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~al 523 (888)
T KOG4236|consen 484 IRTATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQAL 523 (888)
T ss_pred EEeeeEEEEecCCCCCCccccccccchhhccCchhhhhcc
Confidence 4 332221 00 00001112455889999999994
No 138
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=46.49 E-value=19 Score=39.27 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=69.6
Q ss_pred CCCCceeeeEEEEeeeccccceeeeeeEEEEec-------ceeehhccCCCCC---Cccc-eeEEecCCeEEeeCCccee
Q 010823 1 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLES-------RLLAYYKKKPQDN---QVPI-KTLLIDGNCRVEDRGLKTH 69 (500)
Q Consensus 1 ~~~~~~~eGwl~~~g~~~~g~~~~~~Ryfvl~g-------~~l~~yk~~p~~~---~~pi-~~~~i~~~~~V~~~g~~~~ 69 (500)
|.+-.++.|.+|. .++|+|.---+++|.||.. +++.++-+++... .-=+ |.|-+ .+|.=-+.|++-.
T Consensus 4 ~~~~~~k~g~~~~-~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~~~~~~~~~rR~~~l-s~~~S~e~~~~~~ 81 (429)
T KOG4047|consen 4 ICSCLVKDGVPDN-HRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRESVRWPYRCLRRYGYL-SNLFSFESGRRCQ 81 (429)
T ss_pred ccCcccccCccch-hhhhhccccccccceeeeccccccchhhhhhhccCCcccccchhcceeeEee-ccceeeecccccc
Confidence 3455678898886 4677775445999999975 3444442222211 2333 55666 5555444567777
Q ss_pred cCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 70 ~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.|.-+|+|-.-+..+ .|.|.+.-+++.||.+|.+-
T Consensus 82 ~~~~i~~~f~~~a~e-----~~~~~q~l~~~~w~~~i~~~ 116 (429)
T KOG4047|consen 82 TGPGITAFFCDRAEE-----LFNMLQDLMQANWINAIEEP 116 (429)
T ss_pred cCCCceEEEecchHH-----HHHHHHHHHhhhhhhhhhhc
Confidence 788888888777755 78899999999999999876
No 139
>PF15406 PH_6: Pleckstrin homology domain
Probab=40.88 E-value=61 Score=28.99 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=36.1
Q ss_pred CCCCCccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHH
Q 010823 43 PQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIE 107 (500)
Q Consensus 43 p~~~~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~ 107 (500)
..|+..|-+.+-+-.-.-|+.. |..=|.|.+ +.++-+|=|.|++|=..|+-+|+
T Consensus 57 ~~dka~P~GiinLadase~~~~------g~~kF~f~~-----~G~khtF~A~s~aERD~Wv~~lk 110 (112)
T PF15406_consen 57 AEDKASPSGIINLADASEPEKD------GSNKFHFKI-----KGHKHTFEAASAAERDNWVAQLK 110 (112)
T ss_pred cccccCCcceEehhhccccccC------CCceEEEEe-----CCceeeeecCCHHHhccHHHHhh
Confidence 5555677555555333444432 345577776 35666777999999999999886
No 140
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=40.40 E-value=73 Score=28.21 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=29.1
Q ss_pred cCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHH
Q 010823 70 HGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 70 ~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
-....||+.++|.. .|-|.|.+.+++.+|+..|+.
T Consensus 72 D~~nTFvLK~~~~~----eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 72 DNLYTFVLKVDDNT----DIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred CcccEEEEEecCCc----eEEEEcCCHHHHHHHHHHHhc
Confidence 34567899988754 699999999999999998874
No 141
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=39.21 E-value=33 Score=40.25 Aligned_cols=92 Identities=20% Similarity=0.294 Sum_probs=62.7
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhccCC--CCC------CccceeEEecCCeEEeeCCcceec-CeeeEEE
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKP--QDN------QVPIKTLLIDGNCRVEDRGLKTHH-GHMVYVL 77 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p--~~~------~~pi~~~~i~~~~~V~~~g~~~~~-~~~~yv~ 77 (500)
++|=+.+ -.+-|+ |.|-|.|=.-+|= |-++- .++ .+|++ +.+ +++-| -.+.|.|
T Consensus 752 r~g~llK--~skkgL---qqrmfFLfsdill-ytsk~~~~~~~fri~g~lP~~-l~~----------en~en~~s~p~~~ 814 (1036)
T KOG3531|consen 752 RSGCLLK--LSKKGL---QQRMFFLFSDILL-YTSKGPDVQKCFRINGDLPLT-LTM----------ENSENEWSVPHCF 814 (1036)
T ss_pred hcCCchh--hccccc---hhhhhhhhhhhhe-eccCCCChhheeEeccCCceE-eee----------ecccccccCCceE
Confidence 3444444 446677 8888888777665 54443 222 47776 444 22222 2477999
Q ss_pred EEEecCCCceeEEEeecCHHHHHHHHHHHHHHHhhhhcccc
Q 010823 78 SVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQESQV 118 (500)
Q Consensus 78 ~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~~~ 118 (500)
+||-. .+++..+|.+.++.++|+.....||+.+.....
T Consensus 815 ti~~~---qk~i~vsast~~~sk~~~~~r~~~i~~~~k~~~ 852 (1036)
T KOG3531|consen 815 TISGA---QKQIYVSASTRRESKKWEFDRRKAIDLAPKKSS 852 (1036)
T ss_pred EEecc---ceEEEEeccchhhhhhhhhccchhhhhccccCC
Confidence 98865 789999999999999999999999976644333
No 142
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=38.52 E-value=14 Score=41.59 Aligned_cols=98 Identities=21% Similarity=0.395 Sum_probs=62.0
Q ss_pred eeeeEEE-EeeeccccceeeeeeEEEEecceeehhccCCCCC--CccceeEEecCCeEEe-eCCcceecCeeeEEEEEEe
Q 010823 6 VYEGWMV-RYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVE-DRGLKTHHGHMVYVLSVYN 81 (500)
Q Consensus 6 ~~eGwl~-~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~~~--~~pi~~~~i~~~~~V~-~~g~~~~~~~~~yv~~i~~ 81 (500)
..||=|- ++|+=++=..| +.|||-|.|-.|.|-|-+-.+. .-||-.--|.+=--|. .+|+++ -.=+|.|+-
T Consensus 736 ~iEGQLKEKKGrWRf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rs----lpKAFEIFT 810 (851)
T KOG3723|consen 736 LIEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRS----LPKAFEIFT 810 (851)
T ss_pred hhcchhhhhccchhhhhhh-ccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcc----cchhhheee
Confidence 3455442 56777777777 9999999999999545443222 3344333331110011 234444 556788876
Q ss_pred cCCCceeEEEeecCHHHHHHHHHHHHHHHh
Q 010823 82 KKEKYHRITMAAFNIQEALIWKEKIELVID 111 (500)
Q Consensus 82 ~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~ 111 (500)
. |+ ++-+-|-+-.-|+.|.+.|.=|+-
T Consensus 811 A-D~--T~ILKaKDeKNAEEWlqCL~IavA 837 (851)
T KOG3723|consen 811 A-DK--TYILKAKDEKNAEEWLQCLNIAVA 837 (851)
T ss_pred c-Cc--eEEeecccccCHHHHHHHHHHHHH
Confidence 5 43 488889999999999999998853
No 143
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=36.80 E-value=3.2e+02 Score=24.88 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.2
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhc
Q 010823 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (500)
Q Consensus 227 ~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~ 259 (500)
...++.+.+|++||+.||+.+.+-+ .+..|-.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe-~l~~W~~ 38 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPE-LLARWFM 38 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHH-HHHhhcC
Confidence 4688999999999999999997732 6778987
No 144
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=35.91 E-value=2.8e+02 Score=23.67 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=24.0
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhcc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCS 260 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~ 260 (500)
+....+|+|||+.|++++.+.+ ...+|...
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~-~~~~W~~~ 31 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPE-FTRQYWGG 31 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCch-hhhheecc
Confidence 3556789999999999998854 57789765
No 145
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=35.00 E-value=42 Score=39.44 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=36.2
Q ss_pred CeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHHHhhhhcc
Q 010823 71 GHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELVIDQHQES 116 (500)
Q Consensus 71 ~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~~~~~~~ 116 (500)
.+..|||.|--+.-...-+.|||.+.|||-.|+++|+++ .+-.+.
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~-t~~a~t 915 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREI-TWKADT 915 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHH-HHHhhh
Confidence 356788888777766777899999999999999999988 444444
No 146
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=34.16 E-value=43 Score=29.18 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=50.8
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeeh--hccCCCCC--------CccceeEEecCCeEEeeCCcceecCeeeE
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAY--YKKKPQDN--------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 75 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~--yk~~p~~~--------~~pi~~~~i~~~~~V~~~g~~~~~~~~~y 75 (500)
..||.|+.+-+ -.+ ..|=|.|=+-+|-| ||+....+ ..|+.-+.+ +..
T Consensus 4 v~eg~lvel~~--~~r---K~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~------~~~----------- 61 (96)
T cd01228 4 VKDSFLVELVE--GSR---KLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSF------PSE----------- 61 (96)
T ss_pred cccceeeeehh--CCC---cceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHhee------cch-----------
Confidence 46888888642 223 55666666665543 44433332 244433333 321
Q ss_pred EEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 76 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 76 v~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
.|.+.|+ ..+.++|-|.|..|-+.||++|...
T Consensus 62 ~~~~~~~--~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 62 PFRIHNK--NGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred hhhcccc--CCceEEEEecCHHHHHHHHHHHHHH
Confidence 3777754 3888999999999999999999765
No 147
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=30.57 E-value=5.3e+02 Score=25.80 Aligned_cols=117 Identities=9% Similarity=0.013 Sum_probs=67.3
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhcccceeEEEEEe-cCceeEEEEEEecccCCCcCCCceEEEEEEEEEcC
Q 010823 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDCSFQYGSLVEEV-DGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRND 305 (500)
Q Consensus 227 ~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~~~~~vVE~i-Dd~tdIVY~~~~~~~~P~~vs~RDFV~lR~wrr~e 305 (500)
.++|...-+|.++|+++|+++.+++ .+.++-+.|+...|++.- ++.+.- -..+ + +|.+ .- -|.......+ .
T Consensus 67 ~k~Y~errligysp~~my~vVS~V~-~Y~~FVPwC~kS~V~~~~P~~~~kA-~LeV--G-Fk~l-~E-~y~S~Vt~~~-p 138 (227)
T KOG3177|consen 67 EKAYSERRLIGYSPSEMYSVVSNVS-EYHEFVPWCKKSDVTSRRPSGPLKA-DLEV--G-FKPL-DE-RYTSNVTCVK-P 138 (227)
T ss_pred HHHHHHHhhhCCCHHHHHHHHHhHH-HhhccccceeccceeecCCCCCcee-eEEe--c-Cccc-ch-hheeeeEEec-c
Confidence 3456666688999999999999986 588999999999999886 443322 1111 1 2211 10 1111111000 0
Q ss_pred CCcEEEEEEecCCCCCCCCCCeEEEEEceeEEEEEeCCCCCCCCceEEEEEEeeecCCCc
Q 010823 306 DGSYVVLFRSREHENCGPQPGYVRAHVESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWG 365 (500)
Q Consensus 306 DGsyvI~~~SV~hp~~Pp~~g~VRa~i~~gGwvI~Pl~~~~g~~~t~VT~i~~vDpkGwi 365 (500)
+=++..+ .++. =| ..+..-|-|.|-++-++ .|.|.+-+....+-.+
T Consensus 139 ~l~kt~~---~d~r------LF---~~L~t~Wsf~pg~~~p~--tc~ldf~v~FeF~S~l 184 (227)
T KOG3177|consen 139 HLTKTVC---ADGR------LF---NHLITIWSFKPGPNIPR--TCTLDFSVSFEFKSLL 184 (227)
T ss_pred cceEEee---cccc------HH---HhhhheeeeccCCCCCC--eEEEEEEEEEEehhHH
Confidence 1011111 0110 01 13456899999985454 8999998888777666
No 148
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.44 E-value=1.2e+02 Score=26.59 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=52.7
Q ss_pred eeeeEEEEeeeccccceeeee-eEEEEecceeehhc-cCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEE
Q 010823 6 VYEGWMVRYGRRKIGRSFIHM-RYFVLESRLLAYYK-KKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 80 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~-Ryfvl~g~~l~~yk-~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~ 80 (500)
.++|=|+-+..+.- ...++ ++|.+-..+|.-.. .+...+ ..|+.. ..|.+.-- .+.+-.+|.|.
T Consensus 3 i~~G~l~e~~~~~~--kp~~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~------i~V~ni~D---~~~~kNafki~ 71 (100)
T cd01226 3 ILYGELEEFDVETK--KPVQRVMLFLLNDRLIVGNINAAGKYVMESTYSLNS------VAVVNVKD---RENAKKVLKLL 71 (100)
T ss_pred EEcCcEEEechhhC--CccceEEEEEeccEEEEEEecccceEEEEEEEehHH------eEEEecCC---CcCcCceEEEE
Confidence 35555555544432 22334 47888877775422 111122 345444 44433211 12466777777
Q ss_pred ecCCCceeEEEeecCHHHHHHHHHHHHHHH
Q 010823 81 NKKEKYHRITMAAFNIQEALIWKEKIELVI 110 (500)
Q Consensus 81 ~~~~~~~~~~~~a~~~~e~~~W~~a~~~a~ 110 (500)
-... ++ -+.|+|+++-..||..|++|+
T Consensus 72 t~~~-s~--i~qaes~~~K~eWl~~le~a~ 98 (100)
T cd01226 72 IFPE-SR--IYQCESARIKTEWFEELEQAK 98 (100)
T ss_pred eCCc-cE--EEEeCCHHHHHHHHHHHHHHh
Confidence 6532 33 477999999999999999994
No 149
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=28.13 E-value=53 Score=28.70 Aligned_cols=31 Identities=10% Similarity=0.177 Sum_probs=25.0
Q ss_pred EEEEEEecccHHHHHHHHhcCCCCccchhccc
Q 010823 230 MKAVGVVEASCEEIFELVMSMDGTRYEWDCSF 261 (500)
Q Consensus 230 ~KavgvV~a~pe~VfevL~d~d~~R~eWD~~~ 261 (500)
++...+|+|||+.|++++.+.+ ...+|....
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~-~~~~W~~~~ 33 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPE-HFGQWFGVK 33 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChh-hhhhccccc
Confidence 5667799999999999998754 567898753
No 150
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.77 E-value=23 Score=39.80 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=52.0
Q ss_pred eeeEEEEecceeehhccCC--CCC--CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHH
Q 010823 25 HMRYFVLESRLLAYYKKKP--QDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEAL 100 (500)
Q Consensus 25 ~~Ryfvl~g~~l~~yk~~p--~~~--~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~ 100 (500)
++=|-||+|-.|+.-|+.= ..- +.-++-+|=-++.--+ +-+..-+..+||.+- ..+-+.+-|-|.|.+|+.
T Consensus 533 k~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt---~AtdY~KKp~Vf~lr--tAdwrv~LFQaps~eEmq 607 (774)
T KOG0932|consen 533 KMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALAT---PATDYSKKPHVFKLR--TADWRVFLFQAPSQEEMQ 607 (774)
T ss_pred HHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcC---CCcccccCCceEEEE--eccceeEEEeCCCHHHHH
Confidence 7778999999997443211 000 1112222221222222 345556778888774 457899999999999999
Q ss_pred HHHHHHHHH
Q 010823 101 IWKEKIELV 109 (500)
Q Consensus 101 ~W~~a~~~a 109 (500)
.||..|-.+
T Consensus 608 sWi~rIN~v 616 (774)
T KOG0932|consen 608 SWIERINLV 616 (774)
T ss_pred HHHHHHHHH
Confidence 999999988
No 151
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=27.01 E-value=17 Score=41.14 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=34.4
Q ss_pred eeeeEEEEeeeccccceeeeeeEEEEecceeehhccCCC
Q 010823 6 VYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQ 44 (500)
Q Consensus 6 ~~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~~p~ 44 (500)
+.+||+++.+-|..+-++-++=||||++..|.-|.-+..
T Consensus 563 ~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 563 DRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRV 601 (638)
T ss_pred hhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhh
Confidence 478999999999999999999999999999998865444
No 152
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=26.40 E-value=50 Score=30.17 Aligned_cols=32 Identities=9% Similarity=0.265 Sum_probs=27.2
Q ss_pred cceEEEEEEecccHHHHHHHHhcCCCCccchhc
Q 010823 227 SRAMKAVGVVEASCEEIFELVMSMDGTRYEWDC 259 (500)
Q Consensus 227 ~~~~KavgvV~a~pe~VfevL~d~d~~R~eWD~ 259 (500)
...+....+|+|||+.|+++|.+.+ ...+|..
T Consensus 10 ~~~i~~~~~i~Ap~e~Vw~altdp~-~~~~W~~ 41 (157)
T cd08899 10 GATLRFERLLPAPIEDVWAALTDPE-RLARWFA 41 (157)
T ss_pred CeEEEEEEecCCCHHHHHHHHcCHH-HHHhhcC
Confidence 4578889999999999999998753 5778987
No 153
>PF15404 PH_4: Pleckstrin homology domain
Probab=24.76 E-value=3.4e+02 Score=26.37 Aligned_cols=99 Identities=18% Similarity=0.305 Sum_probs=61.0
Q ss_pred eeeEEEEeeeccccceeeeeeEEEEecceeehhcc---C------CCC--C---CccceeEEecCC--------------
Q 010823 7 YEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKK---K------PQD--N---QVPIKTLLIDGN-------------- 58 (500)
Q Consensus 7 ~eGwl~~~g~~~~g~~~~~~Ryfvl~g~~l~~yk~---~------p~~--~---~~pi~~~~i~~~-------------- 58 (500)
|.|-||++... .-.| +++|+||-.-.|=.|+- . |.- + ..||+-.-|=+|
T Consensus 1 ~sG~LY~K~~k--hs~F-~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYvYSG~lt~~DLl~~~~~~ 77 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTF-KKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYVYSGLLTELDLLYRNQTF 77 (185)
T ss_pred CCceeeecCCC--CCCc-eEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceEEeccchhhhhhhccccc
Confidence 67999995433 3334 88999887655544554 2 111 0 245332222111
Q ss_pred ----------eEEeeCCcceecCeeeEEEEEEecC-----------C---------------------------------
Q 010823 59 ----------CRVEDRGLKTHHGHMVYVLSVYNKK-----------E--------------------------------- 84 (500)
Q Consensus 59 ----------~~V~~~g~~~~~~~~~yv~~i~~~~-----------~--------------------------------- 84 (500)
=||=..|.++.-....=.|+|+..+ .
T Consensus 78 d~~~Pg~~~lPRvY~DGw~S~d~d~~~~FvlW~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~L 157 (185)
T PF15404_consen 78 DSNNPGHHSLPRVYQDGWKSSDEDEDRCFVLWFGKKRSISRANENSSHHGSNDNPSESQADTSATNQGKNPNKIKMVSRL 157 (185)
T ss_pred cCCCCCCCccccccCCCCeecCccccEEEEEEECCcccCCchhhcccccccccccccccccccccccccCcCcceecccc
Confidence 2444567777777777888887665 1
Q ss_pred --CceeEEEeecCHHHHHHHHHHHHH
Q 010823 85 --KYHRITMAAFNIQEALIWKEKIEL 108 (500)
Q Consensus 85 --~~~~~~~~a~~~~e~~~W~~a~~~ 108 (500)
..+.+.|-|+|.+|=+.|+-||..
T Consensus 158 g~~gks~VF~ARSRqERD~WV~~I~~ 183 (185)
T PF15404_consen 158 GVSGKSMVFMARSRQERDLWVLAINT 183 (185)
T ss_pred CCCCcEEEEEeccHHHHHHHHHHHHh
Confidence 113457899999999999999863
No 154
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=23.78 E-value=1.2e+02 Score=34.20 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=45.6
Q ss_pred eeeeeEEEEecceeehhccCCCCC---CccceeEEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHH
Q 010823 23 FIHMRYFVLESRLLAYYKKKPQDN---QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEA 99 (500)
Q Consensus 23 ~~~~Ryfvl~g~~l~~yk~~p~~~---~~pi~~~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~ 99 (500)
|.++|+|+|...--.+|-..+... +.|++. +|||| ..+.+.+||.+=+ +.+.+.= =-+.|
T Consensus 464 f~rkr~lllTn~~rll~~~~~~~~lk~eip~~~-----~~~~e-----~~n~~~~~i~TP~------k~~~l~d-~~~~a 526 (604)
T KOG0592|consen 464 FARKRMLLLTNGPRLLYVDPQNLVLKGEIPWSP-----DLRVE-----LKNSSTFFIHTPN------KVYYLED-PEQRA 526 (604)
T ss_pred hhceeEEEecCCCeEEEEecccceeccccccCc-----cccee-----eccCcceEEECCc------cceeccC-cccch
Confidence 678999999866555565555443 677765 77777 3444566666533 4444322 33568
Q ss_pred HHHHHHHHHH
Q 010823 100 LIWKEKIELV 109 (500)
Q Consensus 100 ~~W~~a~~~a 109 (500)
..|-+|+..+
T Consensus 527 s~w~~ai~~~ 536 (604)
T KOG0592|consen 527 SVWCKAIETV 536 (604)
T ss_pred hHHHHhhhhh
Confidence 8899999988
No 155
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=22.25 E-value=1.5e+02 Score=25.87 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=31.0
Q ss_pred EEecCCeEEeeCCcceecCeeeEEEEEEecCCCceeEEEeecCHHHHHHHHHHHHHH
Q 010823 53 LLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIELV 109 (500)
Q Consensus 53 ~~i~~~~~V~~~g~~~~~~~~~yv~~i~~~~~~~~~~~~~a~~~~e~~~W~~a~~~a 109 (500)
+|||.|++|.| +. ++.+.=+.=+..|...|..|+.++|+.++..
T Consensus 16 ~IVd~Gg~V~D---------V~----veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 16 IIVDNGGRVLD---------VI----VEHPVYGEITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp HHHHTT-EEEE---------EE----EEETTTEEEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred HHHHCCCEEEE---------EE----EeCCCCcEEEEEEecCCHHHHHHHHHHHhcc
Confidence 46788888887 32 3344444556788999999999999999987
No 156
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=20.39 E-value=2.7e+02 Score=25.48 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=14.4
Q ss_pred eecCHHHHHHHHHHHHHH
Q 010823 92 AAFNIQEALIWKEKIELV 109 (500)
Q Consensus 92 ~a~~~~e~~~W~~a~~~a 109 (500)
|..+..-+++||+-|++-
T Consensus 95 g~~~~~sL~~WI~~Lq~~ 112 (126)
T PF14784_consen 95 GTSDKDSLLSWIRGLQET 112 (126)
T ss_pred cCCCHHHHHHHHHHHHhh
Confidence 345677899999999974
Done!