BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010824
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 262/471 (55%), Gaps = 40/471 (8%)
Query: 33 VLTLDHSNFSDTVS---KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
VL L NF +S ++VEF+APWCGH K+LAPEYE AA+ L P LAKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGIVP---LAKV 59
Query: 90 DANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIK 149
D AN ++Y + G+PT+KI R+G + Y GPR ADGIV +LKKQ+GPAS ++
Sbjct: 60 DCT--ANTNTCNKYGVSGYPTLKIFRDG-EEAGAYDGPRTADGIVSHLKKQAGPASVPLR 116
Query: 150 SAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSV 209
+ E+ FI +K I+G F + E + A LR +Y F HT L+ E
Sbjct: 117 TEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV--NEYDD 174
Query: 210 TGPVVRLFKP------FDELFVDFKDFKVDA--LEKFVEESSIPIVTVFNSDANN----H 257
G + LF+P F++ V + + K+ + ++KF++E+ I D +
Sbjct: 175 NGEGIILFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENIFGICPHMTEDNKDLIQGK 234
Query: 258 PFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQY--KGQGISFLLGDLEASQGAF 315
+I +++ K +++G+ +++ VA+++ G ++F + +
Sbjct: 235 DLLIAYYDVDYEK-------NAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTFSHEL 287
Query: 316 QYFGLQES--QVPLIVIQTNDGQKYLKP---NLDADQIAPWVKEYKEGKVPPFRKSEPIP 370
FGL+ + ++P++ I+T G+K++ + D + ++++Y +G + + KSEPIP
Sbjct: 288 SDFGLESTAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIP 347
Query: 371 EENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVI 430
E N+ PVKV+VA++ ++V N K+VL+EFYAPWCGHCK L P E+ D ++VI
Sbjct: 348 ESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVI 407
Query: 431 AKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP--YEGDRTKEDIVDFIE 479
AK DATAND+P +EV+G+PT++F A+ K P YEG R D + +++
Sbjct: 408 AKMDATANDVPS-PYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQ 457
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 191 bits (484), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 147/474 (31%), Positives = 240/474 (50%), Gaps = 49/474 (10%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
V+ L +F++ + H+ ++ EF+APWCGHCK +APEY KAA L + + LA++D
Sbjct: 16 VVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCT 73
Query: 93 EEANKELASQYEIRGFPTIKILRNGG-KTIQEYKGPREADGIVEYLKKQSGPASAEIKSA 151
E N++L ++ I GFP++KI +N +Y+GPR A+ IV+++ KQS PA A +
Sbjct: 74 E--NQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAVAVVA-- 129
Query: 152 EDASSFIGEKKVV--IIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNA----KLLPRG 205
D +++ + V +I + + ++A K +DY+F +NA KL
Sbjct: 130 -DLPAYLANETFVTPVIVQSGKIDADFNATFYSMANKHFNDYDFVSAENADDDFKLSIYL 188
Query: 206 ESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFN 265
S++ PVV K D D D EK+++ ++P + + + F ++
Sbjct: 189 PSAMDEPVVYNGKK-----ADIAD--ADVFEKWLQVEALP----YFGEIDGSVFA-QYVE 236
Query: 266 SPNAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQV 325
S LF N E E + + E+A++ +G ++F+ D ++E Q
Sbjct: 237 SGLPLGYLFYN-DEEELEEYKPLFTELAKKNRGL-MNFVSIDARKFGRHAGNLNMKE-QF 293
Query: 326 PLIVIQ-TNDGQKYLKPNL--------------DADQIAPWVKEYKEGKVPPFRKSEPIP 370
PL I + KY P L ++ I VK++ +G P KS+ I
Sbjct: 294 PLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIF 353
Query: 371 EENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVV 429
E + V LV + ++V + K+VL+ +YAPWCGHCK+LAP E+A +Y N +DV+
Sbjct: 354 ENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVL 413
Query: 430 IAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGDRTKEDIVDFIENN 481
IAK D T ND+ G ++GYPT+ K +V Y+G R+ + + DFI+ N
Sbjct: 414 IAKLDHTENDVRGVV--IEGYPTIVLYPGGKKSESVVYQGSRSLDSLFDFIKEN 465
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 111/357 (31%), Positives = 190/357 (53%), Gaps = 21/357 (5%)
Query: 142 GPASAEIKSAED---ASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQN 198
GP S + D A S + +V +IG F + + + + AE + D FG T N
Sbjct: 13 GPGSEFATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAI-DDIPFGITSN 71
Query: 199 AKLLPRGESSVTGPVVRLFKPFDELFVDFK-DFKVDALEKFVEESSIPIVTVFNSDANNH 257
+ + + + G V LFK FDE +F+ + + L F++ + +P+V F
Sbjct: 72 SDVFSKYQLDKDGVV--LFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE--QTA 127
Query: 258 PFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGI-SFLLGDLEASQGAFQ 316
P + F +LF+ S + S ++ AE +KG+ + F+ D +Q +
Sbjct: 128 PKI--FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILE 185
Query: 317 YFGLQESQVPLI-VIQTNDGQKYLKPN---LDADQIAPWVKEYKEGKVPPFRKSEPIPEE 372
+FGL++ + P + +I + KP L A++I + + EGK+ P S+ +PE+
Sbjct: 186 FFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED 245
Query: 373 -NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIA 431
+ +PVKVLV + +D+ F+ KNV +EFYAPWCGHCK+LAPI D++ +Y++ ++VIA
Sbjct: 246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIA 305
Query: 432 KFDATANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIENNRDKAA 486
K D+TAN++ + +V +PT+ FF +++ +TV Y G+RT + F+E+ A
Sbjct: 306 KMDSTANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGA 360
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 9/112 (8%)
Query: 30 KEFVLTLDHSNFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLA 87
K+ V L NF D K N + VEFYAPWCGHCK+LAP ++K H+ +V+A
Sbjct: 248 KQPVKVLVGKNFEDVAFDEKKN-VFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-NIVIA 305
Query: 88 KVDANEEANKELASQYEIRGFPTIKIL-RNGGKTIQEYKGPREADGIVEYLK 138
K+D+ AN+ ++ FPT+K + +T+ +Y G R DG ++L+
Sbjct: 306 KMDST--ANE--VEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 353
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 85/117 (72%), Gaps = 3/117 (2%)
Query: 30 KEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
++ VL L SNF++ ++ H +++VEFYAPWCGHCK LAPEY KAA +L + + LAKV
Sbjct: 6 EDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV 65
Query: 90 DANEEANKELASQYEIRGFPTIKILRNGGK-TIQEYKGPREADGIVEYLKKQSGPAS 145
DA EE++ LA QY +RG+PTIK RNG + +EY READ IV +LKK++GPA+
Sbjct: 66 DATEESD--LAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAA 120
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 5/120 (4%)
Query: 370 PEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADV 428
PEE + V VL + + + K +L+EFYAPWCGHCK LAP + A + + +++
Sbjct: 3 PEEEDH-VLVLRKSNFAE-ALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEI 60
Query: 429 VIAKFDATANDIPGDTFEVQGYPTV-FFRSA-SGKTVPYEGDRTKEDIVDFIENNRDKAA 486
+AK DAT + V+GYPT+ FFR+ + Y R +DIV++++ AA
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPAA 120
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/116 (54%), Positives = 81/116 (69%), Gaps = 4/116 (3%)
Query: 31 EFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD 90
E L L NF + V+ + I+VEFYAPWCGHCKKLAPEYEKAA ELS PP+ LAKVD
Sbjct: 130 EVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVD 189
Query: 91 ANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASA 146
A E + LA ++++ G+PT+KI R G +Y GPRE GIV+Y+ +QSG A++
Sbjct: 190 ATAETD--LAKRFDVSGYPTLKIFRKGRP--YDYNGPREKYGIVDYMIEQSGAAAS 241
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 76/111 (68%), Gaps = 4/111 (3%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
VL L+ +NF + V+ + +++EFYAPWCGHCK+ APEYEK A+ L DPP+ +AK+DA
Sbjct: 17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDAT 76
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGP 143
+ LAS++++ G+PTIKIL+ G +Y+G R + IV +++ S P
Sbjct: 77 SASV--LASRFDVSGYPTIKILKKGQAV--DYEGSRTQEEIVAKVREVSQP 123
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 53/82 (64%), Gaps = 2/82 (2%)
Query: 395 NVLLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
VLLEFYAPWCGHCK+ AP +++A + D + +AK DAT+ + F+V GYPT+
Sbjct: 34 TVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTI 93
Query: 454 FFRSASGKTVPYEGDRTKEDIV 475
G+ V YEG RT+E+IV
Sbjct: 94 KILK-KGQAVDYEGSRTQEEIV 114
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 56/102 (54%), Gaps = 4/102 (3%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY-QNDADVVIAKFDATANDIPGDTF 445
D V N +L+EFYAPWCGHCKKLAP ++ A + + +AK DATA F
Sbjct: 141 DEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRF 200
Query: 446 EVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAA 486
+V GYPT+ FR G+ Y G R K IVD++ AA
Sbjct: 201 DVSGYPTLKIFR--KGRPYDYNGPREKYGIVDYMIEQSGAAA 240
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 129 bits (325), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 4/110 (3%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
L+L NF D V+ + I+VEFYAPWCGHCKKLAPEYEKAA ELS PP+ LAKVDA
Sbjct: 9 TLSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDAT 68
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142
E+ +LA ++++ G+PT+KI R G +Y GPRE GIV+Y+ +QSG
Sbjct: 69 EQT--DLAKRFDVSGYPTLKIFRKGRPF--DYNGPREKYGIVDYMIEQSG 114
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY-QNDADVVIAKFDATAN 438
L D+ D+V N+ +L+EFYAPWCGHCKKLAP ++ A + + +AK DAT
Sbjct: 12 LTKDNFDDVV-NNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATEQ 70
Query: 439 DIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFI 478
F+V GYPT+ FR G+ Y G R K IVD++
Sbjct: 71 TDLAKRFDVSGYPTLKIFR--KGRPFDYNGPREKYGIVDYM 109
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 85/125 (68%), Gaps = 3/125 (2%)
Query: 357 EGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILD 416
+G + + KSEPIPE N+ PVKV+VA++ ++V N K+VL+EFYAPWCGHCK L P
Sbjct: 9 DGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYK 68
Query: 417 EVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP--YEGDRTKEDI 474
E+ D ++VIAK DATAND+P +EV+G+PT++F A+ K P YEG R D
Sbjct: 69 ELGEKLSKDPNIVIAKMDATANDVPS-PYEVRGFPTIYFSPANKKLNPKKYEGGRELSDF 127
Query: 475 VDFIE 479
+ +++
Sbjct: 128 ISYLQ 132
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 72/111 (64%), Gaps = 8/111 (7%)
Query: 40 NFSDTVSKHNF-IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
NF + V+ N +++EFYAPWCGHCK L P+Y++ +L S DP +V+AK+DA AN +
Sbjct: 36 NFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKL-SKDPNIVIAKMDAT--AN-D 91
Query: 99 LASQYEIRGFPTIKIL-RNGGKTIQEYKGPREADGIVEYLKKQ--SGPASA 146
+ S YE+RGFPTI N ++Y+G RE + YL+++ SGP+S
Sbjct: 92 VPSPYEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREATSGPSSG 142
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 74/116 (63%), Gaps = 9/116 (7%)
Query: 33 VLTLDHSNFSDTVS---KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
VL L NF +S ++VEF+APWCGHCK+LAPEYE AA+ L P LAKV
Sbjct: 3 VLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLKGIVP---LAKV 59
Query: 90 DANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPAS 145
D AN ++Y + G+PT+KI R+ G+ Y GPR ADGIV +LKKQ+GPAS
Sbjct: 60 DCT--ANTNTCNKYGVSGYPTLKIFRD-GEEAGAYDGPRTADGIVSHLKKQAGPAS 112
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 380 LVADSLQDMVFNSGKN--VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA 437
L D+ + + ++G +L+EF+APWCGHCK+LAP + A + V +AK D TA
Sbjct: 6 LTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK--GIVPLAKVDCTA 63
Query: 438 NDIPGDTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIE 479
N + + V GYPT+ FR + Y+G RT + IV ++
Sbjct: 64 NTNTCNKYGVSGYPTLKIFRDGE-EAGAYDGPRTADGIVSHLK 105
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 108 bits (270), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 76/122 (62%), Gaps = 6/122 (4%)
Query: 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435
PVKV+V + +V + K+VL+EFYAPWCGHCK+L PI + Y+ D+VIAK DA
Sbjct: 8 PVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDA 67
Query: 436 TANDIPGDTFEVQGYPTVFFRSASGKTVPYE---GDRTKEDIVDFIENNRDKAAPKETVK 492
TANDI D ++V+G+PT++F + K P + G+R E + FI+ + A + K
Sbjct: 68 TANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH---ATKRSRTK 124
Query: 493 EE 494
EE
Sbjct: 125 EE 126
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
+++EFYAPWCGHCK+L P Y + +V+AK+DA AN QY++ GFPT
Sbjct: 28 VLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDAT--ANDITNDQYKVEGFPT 84
Query: 111 IKILRNGGK 119
I +G K
Sbjct: 85 IYFAPSGDK 93
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 9/123 (7%)
Query: 370 PEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDA--- 426
P + PV V+VA + ++V + K+VL+EFYAPWCGHCK LAP +E+ Y
Sbjct: 2 PLGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKD 61
Query: 427 DVVIAKFDATANDIPGDTFEVQGYPTV--FFRSASGKTVPYEGDRTKEDIVDFI-ENNRD 483
VVIAK DATAND+P E+QG+PT+ + A G+ V Y G RT ED++ FI EN +
Sbjct: 62 RVVIAKVDATANDVPD---EIQGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY 118
Query: 484 KAA 486
KAA
Sbjct: 119 KAA 121
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 14/93 (15%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEK-----AASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+++EFYAPWCGHCK LAP+YE+ A SE VV+AKVDA + EI
Sbjct: 28 VLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDR---VVIAKVDATANDVPD-----EI 79
Query: 106 RGFPTIKILRNGGKTIQ-EYKGPREADGIVEYL 137
+GFPTIK+ G K Y G R + +++++
Sbjct: 80 QGFPTIKLYPAGAKGQPVTYSGSRTVEDLIKFI 112
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 74/111 (66%), Gaps = 4/111 (3%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
V L+ NF + V+ + +++EFYAPWCGHCK+ APEYEK AS L +DPP+ +AK+DA
Sbjct: 19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDAT 78
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGP 143
+ LAS++++ G+PTIKIL+ G +Y G R + IV +++ S P
Sbjct: 79 SASM--LASKFDVSGYPTIKILKKGQAV--DYDGSRTQEEIVAKVREVSQP 125
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 2/82 (2%)
Query: 395 NVLLEFYAPWCGHCKKLAPILDEVAVSYQ-NDADVVIAKFDATANDIPGDTFEVQGYPTV 453
VLLEFYAPWCGHCK+ AP +++A + + ND + +AK DAT+ + F+V GYPT+
Sbjct: 36 TVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTI 95
Query: 454 FFRSASGKTVPYEGDRTKEDIV 475
G+ V Y+G RT+E+IV
Sbjct: 96 KILK-KGQAVDYDGSRTQEEIV 116
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Query: 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435
PVKVLV + +D+ F+ KNV +EFYAPWCGHCK+LAPI D++ +Y++ ++VIAK D+
Sbjct: 8 PVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDS 67
Query: 436 TANDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFIE 479
TAN++ + +V +PT+ FF +++ +TV Y G+RT + F+E
Sbjct: 68 TANEV--EAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 111
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 62/109 (56%), Gaps = 9/109 (8%)
Query: 33 VLTLDHSNFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD 90
V L NF D K N + VEFYAPWCGHCK+LAP ++K H+ +V+AK+D
Sbjct: 9 VKVLVGKNFEDVAFDEKKN-VFVEFYAPWCGHCKQLAPIWDKLGETYKDHE-NIVIAKMD 66
Query: 91 ANEEANKELASQYEIRGFPTIKIL-RNGGKTIQEYKGPREADGIVEYLK 138
+ AN+ A + + FPT+K + +T+ +Y G R DG ++L+
Sbjct: 67 ST--ANEVEAVK--VHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLE 111
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 87.8 bits (216), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 12/113 (10%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPP----VVLAK 88
VL L +NF DT+++ ++FYAPWCGHCK LAP +E ELS + P V +A+
Sbjct: 7 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWE----ELSKKEFPGLAGVKIAE 61
Query: 89 VDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141
VD E N + S+Y +RG+PT+ + R GGK + E+ G R+ D + ++ Q+
Sbjct: 62 VDCTAERN--ICSKYSVRGYPTLLLFR-GGKKVSEHSGGRDLDSLHRFVLSQA 111
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
++FYAPWCGHCK LAP +E++ + A V IA+ D TA + V+GYPT+
Sbjct: 25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLL 84
Query: 456 RSASGKTVPYEGDRTKEDIVDFI 478
K + G R + + F+
Sbjct: 85 FRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 12/113 (10%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPP----VVLAK 88
VL L +NF DT+++ ++FYAPWCGHCK LAP +E ELS + P V +A+
Sbjct: 9 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWE----ELSKKEFPGLAGVKIAE 63
Query: 89 VDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141
VD E N + S+Y +RG+PT+ + R GGK + E+ G R+ D + ++ Q+
Sbjct: 64 VDCTAERN--ICSKYSVRGYPTLLLFR-GGKKVSEHSGGRDLDSLHRFVLSQA 113
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
++FYAPWCGHCK LAP +E++ + A V IA+ D TA + V+GYPT+
Sbjct: 27 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLL 86
Query: 456 RSASGKTVPYEGDRTKEDIVDFI 478
K + G R + + F+
Sbjct: 87 FRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 87.4 bits (215), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 12/113 (10%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPP----VVLAK 88
VL L +NF DT+++ ++FYAPWCGHCK LAP +E ELS + P V +A+
Sbjct: 2 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWE----ELSKKEFPGLAGVKIAE 56
Query: 89 VDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141
VD E N + S+Y +RG+PT+ + R GGK + E+ G R+ D + ++ Q+
Sbjct: 57 VDCTAERN--ICSKYSVRGYPTLLLFR-GGKKVSEHSGGRDLDSLHRFVLSQA 106
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
++FYAPWCGHCK LAP +E++ + A V IA+ D TA + V+GYPT+
Sbjct: 20 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLL 79
Query: 456 RSASGKTVPYEGDRTKEDIVDFI 478
K + G R + + F+
Sbjct: 80 FRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 69/118 (58%), Gaps = 10/118 (8%)
Query: 33 VLTLDHSNFS-DTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91
V+ L SNF+ + + +VEFYAPWCGHC++L PE++KAA+ L + KV A
Sbjct: 19 VIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD------VVKVGA 72
Query: 92 -NEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKK--QSGPASA 146
N + ++ L QY ++GFPTIKI ++Y+G R + IV+ +SGP+S
Sbjct: 73 VNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGPSSG 130
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 5/82 (6%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVV-IAKFDATANDIPGDTFEVQGYPTV-F 454
L+EFYAPWCGHC++L P + A + + DVV + +A + G + VQG+PT+
Sbjct: 39 LVEFYAPWCGHCQRLTPEWKKAATALK---DVVKVGAVNADKHQSLGGQYGVQGFPTIKI 95
Query: 455 FRSASGKTVPYEGDRTKEDIVD 476
F + K Y+G RT E IVD
Sbjct: 96 FGANKNKPEDYQGGRTGEAIVD 117
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 33 VLTLDHSNFSDTV-SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDP-PVVLAKVD 90
V+ L +F V + +VEFYAPWCGHCK L PE+ AASE+ V LA VD
Sbjct: 9 VIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVD 68
Query: 91 ANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIV 134
A N+ LAS+Y IRGFPTIKI + G + +Y G R IV
Sbjct: 69 AT--VNQVLASRYGIRGFPTIKIFQKGESPV-DYDGGRTRSDIV 109
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIAKFDATA 437
L DS V +S ++EFYAPWCGHCK L P A V Q V +A DAT
Sbjct: 12 LTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV 71
Query: 438 NDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVD-FIENNRDKAAPKETVKEESG 496
N + + ++G+PT+ V Y+G RT+ DIV ++ D A P E + ESG
Sbjct: 72 NQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPPELL--ESG 129
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 6/164 (3%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDP---PVVLAKV 89
+ +LD N + ++ + +V FYA WC + L P +E+A+ + P VV A+V
Sbjct: 7 ITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARV 66
Query: 90 DANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIK 149
D ++ ++ +A +Y I +PT+K+ RNG +EY+G R + +Y+++Q EI+
Sbjct: 67 DCDQHSD--IAQRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQKSDPIQEIR 124
Query: 150 SAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEF 193
+ ++ + K IIG F + + + +A L D F
Sbjct: 125 DLAEITT-LDRSKRNIIGYFEQKDSDNYRVFERVANILHDDCAF 167
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 7/112 (6%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDE----VAVSYQNDADVVIAKFDATANDIPG 442
D + N+ L+ FYA WC + L PI +E + + N+ VV A+ D +
Sbjct: 16 DEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIA 75
Query: 443 DTFEVQGYPTV-FFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETVKE 493
+ + YPT+ FR+ Y G R+ + + D+I K+ P + +++
Sbjct: 76 QRYRISKYPTLKLFRNGXXXKREYRGQRSVKALADYIRQQ--KSDPIQEIRD 125
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 36 LDHSNFSDTVSKHNFI-VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE 94
L +F + N+ +VEFYAPWCGHCKKL+ + KAA L D V +A V+ +
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL---DGVVQVAAVNCDLN 78
Query: 95 ANKELASQYEIRGFPTIKILR 115
NK L ++Y++ GFPT+ + R
Sbjct: 79 KNKALCAKYDVNGFPTLMVFR 99
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L S + N+ L+EFYAPWCGHCKKL+ + A V D N
Sbjct: 22 LTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKNK 81
Query: 440 IPGDTFEVQGYPTVF-FR-----------------SASGKTVPYEGDRTKEDIVDF 477
++V G+PT+ FR SA V Y G RT IVDF
Sbjct: 82 ALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEV-YSGARTLAPIVDF 136
>pdb|2H8L|A Chain A, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|B Chain B, Crystal Structure Of The Bb' Fragment Of Erp57
pdb|2H8L|C Chain C, Crystal Structure Of The Bb' Fragment Of Erp57
Length = 252
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 119/251 (47%), Gaps = 28/251 (11%)
Query: 143 PASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLL 202
PAS +++ E+ FI +K I+G F + E + A LR +Y F HT L+
Sbjct: 6 PASVPLRTEEEFKKFISDKDASIVGFFDDSFSEAHSEFLKAASNLRDNYRFAHTNVESLV 65
Query: 203 PRGESSVTGPVVRLFKP------FDELFVDFKDFKVDA--LEKFVEESSIPIVTVFNSDA 254
E G + LF+P F++ V + + K + ++KF++E+ I D
Sbjct: 66 --NEYDDNGEGIILFRPSHLTNKFEDKTVAYTEQKXTSGKIKKFIQENIFGICPHXTEDN 123
Query: 255 NN----HPFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQY--KGQGISFLLGDL 308
+ +I +++ K +++G+ +++ VA+++ G ++F +
Sbjct: 124 KDLIQGKDLLIAYYDVDYEK-------NAKGSNYWRNRVXXVAKKFLDAGHKLNFAVASR 176
Query: 309 EASQGAFQYFGLQES--QVPLIVIQTNDGQKYLKP---NLDADQIAPWVKEYKEGKVPPF 363
+ FGL+ + ++P++ I+T G+K++ + D + ++++Y +G + +
Sbjct: 177 KTFSHELSDFGLESTAGEIPVVAIRTAKGEKFVXQEEFSRDGKALERFLQDYFDGNLKRY 236
Query: 364 RKSEPIPEENN 374
KSEPIPE N+
Sbjct: 237 LKSEPIPESND 247
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 58/92 (63%), Gaps = 6/92 (6%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++V+F+APWCG C+++AP+++ AA+ L+ V LAK+D +A+ +A ++ I+G P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDT--QAHPAVAGRHRIQGIPA 121
Query: 111 IKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142
IL + G+ + G R A +V +++ + G
Sbjct: 122 F-ILFHKGRELARAAGARPASELVGFVRGKLG 152
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
+L++F+APWCG C+++AP A + V +AK D A+ +QG P
Sbjct: 67 LLVDFWAPWCGPCRQMAPQFQAAAATLA--GQVRLAKIDTQAHPAVAGRHRIQGIPAFIL 124
Query: 456 RSASGKTVPYEGDRTKEDIVDFI 478
+ G R ++V F+
Sbjct: 125 FHKGRELARAAGARPASELVGFV 147
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 62.8 bits (151), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/107 (34%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
Query: 37 DHSNFSD-TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA 95
D +F D V+ +VV+F+A WCG CK L P EK ++ VV+AKVD ++
Sbjct: 19 DGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKM---VAKQHGKVVMAKVDIDD-- 73
Query: 96 NKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142
+ +LA +YE+ PT+ ++N G + ++ G ++ D + +LKK G
Sbjct: 74 HTDLAIEYEVSAVPTVLAMKN-GDVVDKFVGIKDEDQLEAFLKKLIG 119
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 385 LQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT 444
QD V NS V+++F+A WCG CK L P L+++ + VV+AK D +
Sbjct: 23 FQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA--KQHGKVVMAKVDIDDHTDLAIE 80
Query: 445 FEVQGYPTVF 454
+EV PTV
Sbjct: 81 YEVSAVPTVL 90
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCGHCK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCGHCK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112
VEF+A WCGHC AP + A ++ + P + LA +D EE N + + I GFPT++
Sbjct: 35 VEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVR 94
Query: 113 IL 114
Sbjct: 95 FF 96
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 374 NEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA--VSYQNDADVVIA 431
++P+ +L AD+++ V S +EF+A WCGHC AP +A V A + +A
Sbjct: 11 SDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPA-LYLA 69
Query: 432 KFDAT--ANDIPGDTFEVQGYPTVFFRSA-----SGKTVPYEG---DRTKEDIVDFIENN 481
D N F + G+PTV F A SG P G +E ++D +E++
Sbjct: 70 ALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALESH 129
Query: 482 RDKAAP 487
D P
Sbjct: 130 HDTWPP 135
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 17 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 74
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKETV 491
+ ++G PT+ G +K + +F++ N +A + TV
Sbjct: 75 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANLAGSAMESTV 126
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 19 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 73
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 74 PGTAPKYGIRGIPTLLLFKNG 94
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 30 KEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
KE V L+ NF + ++K+ +VV+F+A WC C LAP E EL++ P V K+
Sbjct: 5 KEPVKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIE----ELANDYPQVAFGKL 60
Query: 90 DANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
N E ++++A +Y I PTI +N G+ + + G PRE
Sbjct: 61 --NTEESQDIAMRYGIMSLPTIMFFKN-GELVDQILGAVPRE 99
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 371 EENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVI 430
E+ EPVK L + + + + K V+++F+A WC C LAP+++E+A Y V
Sbjct: 2 EKVKEPVKHLNSKNFDEFI-TKNKIVVVDFWAEWCAPCLILAPVIEELANDY---PQVAF 57
Query: 431 AKFDATANDIPGDTFEVQGYPTVFF 455
K + + + + PT+ F
Sbjct: 58 GKLNTEESQDIAMRYGIMSLPTIMF 82
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+K IVV+F+A WCG C+ +AP+ E A E+ P V AKVD ++ N+E A++Y +
Sbjct: 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEI----PEVEFAKVDVDQ--NEEAAAKYSV 70
Query: 106 RGFPTIKILRNGGKTIQEYKGPRE 129
PT +++ GK + + G E
Sbjct: 71 TAMPTFVFIKD-GKEVDRFSGANE 93
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
N G+ ++++F+A WCG C+ +AP ++ +A + +V AK D N+ + V
Sbjct: 17 NKGRLIVVDFFAQWCGPCRNIAPKVEALA---KEIPEVEFAKVDVDQNEEAAAKYSVTAM 73
Query: 451 PTVFF 455
PT F
Sbjct: 74 PTFVF 78
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436
V+V+ ++ ++++ + ++EFYAPWC C+ L P + A + D +V IAK D T
Sbjct: 9 VRVITDENWRELLEG---DWMIEFYAPWCPACQNLQPEWESFA-EWGEDLEVNIAKVDVT 64
Query: 437 ANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDKA 485
F + PT+ + G+ Y+G RTK+D ++FI + K+
Sbjct: 65 EQPGLSGRFIINALPTI-YHCKDGEFRRYQGPRTKKDFINFISDKEWKS 112
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
++EFYAPWC C+ L PE+E A D V +AKVD E+ L+ ++ I PTI
Sbjct: 26 MIEFYAPWCPACQNLQPEWESFAE--WGEDLEVNIAKVDVTEQPG--LSGRFIINALPTI 81
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSF 157
++G + Y+GPR + ++ + E KS E SS+
Sbjct: 82 YHCKDG--EFRRYQGPRTKKDFINFISDK------EWKSIEPVSSW 119
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+ + F +S++ ++V+F+A WCG CK++AP YE E S +V KVD +E
Sbjct: 12 IVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYE----ECSKTYTKMVFIKVDVDE 67
Query: 94 EANKELASQYEIRGFPTIKILRNGG 118
+ E+ + I PT K+ +NG
Sbjct: 68 VS--EVTEKENITSMPTFKVYKNGS 90
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 31/46 (67%)
Query: 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
VK++ + + D + + + V+++F+A WCG CK++AP +E + +Y
Sbjct: 10 VKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTY 55
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 58.9 bits (141), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+TL +NF + ++V+F+A WCG C+ +AP E+ A +H V +AK++ +E
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFA---EAHADKVTVAKLNVDE 59
Query: 94 EANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
N E SQ+ I PT+ IL GG+ +++ G P+E
Sbjct: 60 --NPETTSQFGIMSIPTL-ILFKGGRPVKQLIGYQPKE 94
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
VL++F+A WCG C+ +AP+L+E A ++ + V +AK + N F + PT+
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLIL 77
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 373 NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA---VSYQNDADVV 429
+++P+ +L ADS++ V S +EF+A WCGH AP E+A ++ ++
Sbjct: 10 SSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLA 69
Query: 430 IAKFDATANDIPGDTFEVQGYPTV-----FFRSASGKTVPYEG---DRTKEDIVDFIENN 481
+ N F + G+PTV F ++ SG T+P G + ++D +E++
Sbjct: 70 VLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALESH 129
Query: 482 RDKAAP 487
RD P
Sbjct: 130 RDTWPP 135
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112
VEF+A WCGH AP +++ A+++ P + LA +D EE N + ++ I GFPT++
Sbjct: 35 VEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVR 94
Query: 113 ILR 115
+
Sbjct: 95 FFQ 97
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+TL +NF + ++V+F+A WCG C+ +AP E+ A +H V +AK++ +E
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA---EAHADKVTVAKLNVDE 59
Query: 94 EANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
N E SQ+ I PT+ IL GG+ +++ G P+E
Sbjct: 60 --NPETTSQFGIMSIPTL-ILFKGGRPVKQLIGYQPKE 94
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K VL++F+A WCG C+ +AP+L+E A ++ + V +AK + N F + PT+
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 454 FF 455
Sbjct: 76 IL 77
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 58.9 bits (141), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS + V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 58.5 bits (140), Expect = 8e-09, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQLKEFLDAN 106
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 58.5 bits (140), Expect = 9e-09, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 374 NEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKF 433
+E + L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK
Sbjct: 1 SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKL 58
Query: 434 DATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ N + ++G PT+ G +K + +F++ N
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 33 VLTLDHSNF-SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91
++ L +F +D + I+V+F+A WCG CK +AP ++ A E + + +AK+
Sbjct: 4 IIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL-- 58
Query: 92 NEEANKELASQYEIRGFPTIKILRNG 117
N + N A +Y IRG PT+ + +NG
Sbjct: 59 NIDQNPGTAPKYGIRGIPTLLLFKNG 84
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
NF +T+ +H ++V+F+A WC C+ +AP E+ A E +++AK+D +E N +
Sbjct: 10 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK---LLVAKLDVDE--NPK 64
Query: 99 LASQYEIRGFPTIKILRNG 117
A +Y + PT+ + ++G
Sbjct: 65 TAXRYRVXSIPTVILFKDG 83
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440
V D D VL++F+A WC C+ +APIL+E+A Y+ +++AK D N
Sbjct: 7 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPK 64
Query: 441 PGDTFEVQGYPTVFF 455
+ V PTV
Sbjct: 65 TAXRYRVXSIPTVIL 79
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
NF +T+ +H ++V+F+A WC C+ +AP E+ A E +++AK+D +E N +
Sbjct: 9 QNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYEGK---LLVAKLDVDE--NPK 63
Query: 99 LASQYEIRGFPTIKILRNG 117
A +Y + PT+ + ++G
Sbjct: 64 TAXRYRVXSIPTVILFKDG 82
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440
V D D VL++F+A WC C+ +APIL+E+A Y+ +++AK D N
Sbjct: 6 VTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIAKEYE--GKLLVAKLDVDENPK 63
Query: 441 PGDTFEVQGYPTVFF 455
+ V PTV
Sbjct: 64 TAXRYRVXSIPTVIL 78
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.4 bits (124), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIAEE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A + + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADD---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.8 bits (125), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+TL +NF + ++V+F+A WCG C+ +AP E+ A +H V +AK++ +E
Sbjct: 3 MTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFA---EAHADKVTVAKLNVDE 59
Query: 94 EANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
N E SQ+ I PT+ IL GG+ +++ G P+E
Sbjct: 60 --NPETTSQFGIMSIPTL-ILFKGGEPVKQLIGYQPKE 94
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
VL++F+A WCG C+ +AP+L+E A ++ + V +AK + N F + PT+
Sbjct: 20 VLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTLIL 77
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 65
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 66 GTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 10 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 64
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 65 PGTAPKYGIRGTPTLLLFKNG 85
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 8/98 (8%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+TL +NF + ++V+F+A WCG C+ +AP E+ A +H V +AK++ +E
Sbjct: 3 MTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA---EAHADKVTVAKLNVDE 59
Query: 94 EANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
N E SQ+ I PT+ IL GG+ +++ G P+E
Sbjct: 60 --NPETTSQFGIMSIPTL-ILFKGGEPVKQLIGYQPKE 94
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K VL++F+A WCG C+ +AP+L+E A ++ + V +AK + N F + PT+
Sbjct: 18 KPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD--KVTVAKLNVDENPETTSQFGIMSIPTL 75
Query: 454 FF 455
Sbjct: 76 IL 77
>pdb|2K18|A Chain A, Solution Structure Of Bb' Domains Of Human Protein
Disulfide Isomerase
Length = 228
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 103/226 (45%), Gaps = 13/226 (5%)
Query: 143 PASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLL 202
PA+ + A S + +V +IG F + + + + AE + D FG T N+ +
Sbjct: 6 PAATTLPDGAAAESLVESSEVAVIGFFKDVESDSAKQFLQAAEAI-DDIPFGITSNSDVF 64
Query: 203 PRGESSVTGPVVRLFKPFDELFVDFK-DFKVDALEKFVEESSIPIVTVFNSDANNHPFVI 261
+ + G V LFK FDE +F+ + + L F++ + +P+V F P +
Sbjct: 65 SKYQLDKDG--VVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTE--QTAPKI- 119
Query: 262 KFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGI-SFLLGDLEASQGAFQYFGL 320
F +LF+ S + S ++ AE +KG+ + F+ D +Q ++FGL
Sbjct: 120 -FGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGL 178
Query: 321 QESQVPLI-VIQTNDGQKYLKP---NLDADQIAPWVKEYKEGKVPP 362
++ + P + +I + KP L A++I + + EGK+ P
Sbjct: 179 KKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKP 224
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQLKEFLDAN 106
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
+V++ + WCG CK +AP+YEK A E V+ K+D N+E NK LA + IR PT
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE-NKTLAKELGIRVVPT 94
Query: 111 IKILR 115
KIL+
Sbjct: 95 FKILK 99
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 383 DSLQDMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435
D+ +V +G K V+L+ + WCG CK +AP +++A Y DV+ K D
Sbjct: 26 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDVIFLKLDC 76
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
V+ LD NF ++ H VV+F+A WC C LAP E EL+ P V K++++
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIE----ELAEDYPQVGFGKLNSD 56
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKG--PRE 129
E N ++A++Y + PT+ ++ G+ + E G PRE
Sbjct: 57 E--NPDIAARYGVMSLPTVIFFKD-GEPVDEIIGAVPRE 92
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE 446
D S + +++F+A WC C LAPI++E+A Y V K ++ N +
Sbjct: 10 DSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ---VGFGKLNSDENPDIAARYG 66
Query: 447 VQGYPTVFF 455
V PTV F
Sbjct: 67 VMSLPTVIF 75
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
+V++ + WCG CK +AP+YEK A E V+ K+D N+E NK LA + IR PT
Sbjct: 28 VVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQE-NKTLAKELGIRVVPT 82
Query: 111 IKILR 115
KIL+
Sbjct: 83 FKILK 87
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 383 DSLQDMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435
D+ +V +G K V+L+ + WCG CK +AP +++A Y DV+ K D
Sbjct: 14 DTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEY---LDVIFLKLDC 64
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 372 ENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIA 431
E + +KV A D V +S K VL++F+A WCG CK +AP+L+E+A + D+ +A
Sbjct: 10 EKSATIKVTDASFATD-VLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT--ERATDLTVA 66
Query: 432 KFDATANDIPGDTFEVQGYPTVFF 455
K D N F+V PT+
Sbjct: 67 KLDVDTNPETARNFQVVSIPTLIL 90
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D +S + ++V+F+A WCG CK +AP E+ A+E ++ + +AK+D + N
Sbjct: 19 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDV--DTN 73
Query: 97 KELASQYEIRGFPTIKILRNG 117
E A +++ PT+ + ++G
Sbjct: 74 PETARNFQVVSIPTLILFKDG 94
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFF 455
+ ++G PT+
Sbjct: 65 GTAPKYGIRGIPTLLL 80
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 383 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG 442
DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 10 DSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNPGTA 67
Query: 443 DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 68 PKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.4 bits (124), Expect = 6e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFF 455
+ ++G PT+
Sbjct: 65 GTAPKYGIRGIPTLLL 80
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 372 ENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIA 431
E + +KV A D V +S K VL++F+A WCG CK +AP+L+E+A + D+ +A
Sbjct: 5 EKSATIKVTDASFATD-VLSSNKPVLVDFWATWCGPCKMVAPVLEEIAT--ERATDLTVA 61
Query: 432 KFDATANDIPGDTFEVQGYPTVFF 455
K D N F+V PT+
Sbjct: 62 KLDVDTNPETARNFQVVSIPTLIL 85
Score = 52.0 bits (123), Expect = 9e-07, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D +S + ++V+F+A WCG CK +AP E+ A+E ++ + +AK+D + N
Sbjct: 14 DASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDV--DTN 68
Query: 97 KELASQYEIRGFPTIKILRNG 117
E A +++ PT+ + ++G
Sbjct: 69 PETARNFQVVSIPTLILFKDG 89
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILD++A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.0 bits (123), Expect = 7e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP + A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 390 FNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQG 449
+ K +++FYA WCG CK +APILDE+A Y D +VI K D F ++
Sbjct: 35 YEGDKPAIVDFYADWCGPCKMVAPILDELAKEY--DGQIVIYKVDTEKEQELAGAFGIRS 92
Query: 450 YPTVFFRSASGK 461
P++ F GK
Sbjct: 93 IPSILFIPMEGK 104
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+FYA WCG CK +AP ++ A E +D +V+ KVD +E +ELA + IR P+I
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKE---YDGQIVIYKVDTEKE--QELAGAFGIRSIPSI 96
Query: 112 KILRNGGK 119
+ GK
Sbjct: 97 LFIPMEGK 104
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 383 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG 442
D+ +++V S VL++F+APWCG C+ +AP++DE+A Y++ V D + N
Sbjct: 9 DTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN--VA 66
Query: 443 DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIE 479
+ ++ PT+ K G K IV +E
Sbjct: 67 SEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVE 103
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++V+F+APWCG C+ +AP ++ A E L V N + + +AS+Y IR PT
Sbjct: 22 VLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-----LKCVKLNTDESPNVASEYGIRSIPT 76
Query: 111 IKILRNGGKTIQEYKGPREADGIVEYLKK 139
I + + GGK + G IV+ ++K
Sbjct: 77 IMVFK-GGKKCETIIGAVPKATIVQTVEK 104
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
V++F+APWCG C+ AP + + A+E + V KV N EA L++++ IR PTI
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKV--NTEAEPALSTRFRIRSIPTI 113
Query: 112 KILRNG 117
+ RNG
Sbjct: 114 XLYRNG 119
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
+++F+APWCG C+ API E A + V K + A F ++ PT+
Sbjct: 59 VIDFWAPWCGPCRSFAPIFAETAA--ERAGKVRFVKVNTEAEPALSTRFRIRSIPTI 113
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG C+ +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG C+ +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 37 DHSNFSDTVSK--HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE 94
D +F+ +++ + +V++FYA WCG CK +AP+ E ELS VV KVD +E
Sbjct: 7 DQEDFTKQLNEAGNKLVVIDFYATWCGPCKMIAPKLE----ELSQSMSDVVFLKVDVDE- 61
Query: 95 ANKELASQYEIRGFPTIKILRNGGK 119
+++A +I PT ++NG K
Sbjct: 62 -CEDIAQDNQIACMPTFLFMKNGQK 85
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT-ANDIPGDTFEVQGYP 451
K V+++FYA WCG CK +AP L+E++ Q+ +DVV K D DI D ++ P
Sbjct: 20 NKLVVIDFYATWCGPCKMIAPKLEELS---QSMSDVVFLKVDVDECEDIAQDN-QIACMP 75
Query: 452 TVFFRSASGKTVPYEGDRTKEDIVDFIENNR 482
T F K G + +++ +E N+
Sbjct: 76 TFLFMKNGQKLDSLSG-ANYDKLLELVEKNK 105
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG- 442
S ++ V S V+++F+APWCG CK +AP++DE+A Y IA + ++ PG
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----IAVYKLNTDEAPGI 64
Query: 443 -DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIE 479
+ ++ PTV F + G K + D IE
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIE 102
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++V+F+APWCG CK +AP ++ A E S + + K++ +E +A+QY IR PT
Sbjct: 21 VMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAPG--IATQYNIRSIPT 75
Query: 111 IKILRNGGK 119
+ +NG +
Sbjct: 76 VLFFKNGER 84
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L +S V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APIL+E+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP E+ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG- 442
S ++ V S V+++F+APWCG CK +AP++DE+A Y IA + ++ PG
Sbjct: 8 SWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK----IAVYKLNTDEAPGI 63
Query: 443 -DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIE 479
+ ++ PTV F + G K + D IE
Sbjct: 64 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIE 101
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++V+F+APWCG CK +AP ++ A E S + + K++ +E +A+QY IR PT
Sbjct: 20 VMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAPG--IATQYNIRSIPT 74
Query: 111 IKILRNGGK 119
+ +NG +
Sbjct: 75 VLFFKNGER 83
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 31 EFVLTLDHSNF-SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
E L + S+F D + ++V+F+A WCG CK + P + E + V +AKV
Sbjct: 2 EHTLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKV 58
Query: 90 DANEEANKELASQYEIRGFPTIKILRNG 117
+ ++ N E + Y++R PT+ ++R+G
Sbjct: 59 NIDD--NPETPNAYQVRSIPTLMLVRDG 84
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 386 QDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF 445
QD++ SG VL++F+A WCG CK + P L E+ + V +AK + N + +
Sbjct: 14 QDVLKASGL-VLVDFWAEWCGPCKMIGPALGEIGKEFA--GKVTVAKVNIDDNPETPNAY 70
Query: 446 EVQGYPTVFF 455
+V+ PT+
Sbjct: 71 QVRSIPTLML 80
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 44 TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQY 103
T + +V++F+A WCG CK ++P+ + +++ + + VV+ KVD +E +++A +Y
Sbjct: 16 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEY 70
Query: 104 EIRGFPTIKILRNGGKTIQEYKG 126
I PT L+NG K ++E+ G
Sbjct: 71 NISSMPTFVFLKNGVK-VEEFAG 92
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYP 451
SGK V+L+F+A WCG CK ++P L E++ + + +VV+ K D + + + P
Sbjct: 19 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMP 76
Query: 452 TVFFRSASGKTVPYEGDRTK--EDIV 475
T F K + G K ED++
Sbjct: 77 TFVFLKNGVKVEEFAGANAKRLEDVI 102
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 44 TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQY 103
T + +V++F+A WCG CK ++P+ + +++ + + VV+ KVD +E +++A +Y
Sbjct: 21 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDE--CEDIAMEY 75
Query: 104 EIRGFPTIKILRNGGKTIQEYKG 126
I PT L+NG K ++E+ G
Sbjct: 76 NISSMPTFVFLKNGVK-VEEFAG 97
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYP 451
SGK V+L+F+A WCG CK ++P L E++ + + +VV+ K D + + + P
Sbjct: 24 SGKLVVLDFFATWCGPCKMISPKLVELSTQFAD--NVVVLKVDVDECEDIAMEYNISSMP 81
Query: 452 TVFFRSASGKTVPYEGDRTK--EDIV 475
T F K + G K ED++
Sbjct: 82 TFVFLKNGVKVEEFAGANAKRLEDVI 107
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
S F +++ +VV+FYA WCG CK +AP EK S P K+D +E +
Sbjct: 9 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEK----FSEQYPQADFYKLDVDELG--D 62
Query: 99 LASQYEIRGFPTIKILRNG 117
+A + E+ PT+ + +NG
Sbjct: 63 VAQKNEVSAMPTLLLFKNG 81
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
D K V+++FYA WCG CK +AP++++ + Y
Sbjct: 12 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY 47
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
S F +++ +VV+FYA WCG CK +AP EK S P K+D +E +
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEK----FSEQYPQADFYKLDVDELG--D 68
Query: 99 LASQYEIRGFPTIKILRNG 117
+A + E+ PT+ + +NG
Sbjct: 69 VAQKNEVSAMPTLLLFKNG 87
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
D K V+++FYA WCG CK +AP++++ + Y
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQY 53
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++ PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IR PT+ + +NG
Sbjct: 64 PGTAPKYGIRSIPTLLLFKNG 84
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WC CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 49.3 bits (116), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WC CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+ ++ +F+APWCG CK +AP E+ E+ + + K+D +E N+E A +Y +
Sbjct: 15 TSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDK---LKIVKIDVDE--NQETAGKYGV 69
Query: 106 RGFPTIKILRNG 117
PT+ +L++G
Sbjct: 70 MSIPTLLVLKDG 81
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
VL +F+APWCG CK +AP+L+E+ + +V K D N + V PT+
Sbjct: 20 VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIV--KIDVDENQETAGKYGVMSIPTLL 76
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG K +APILDE+A YQ + +AK + N
Sbjct: 27 LTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 84
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 85 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 126
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG K +AP ++ A E + + +AK+ N + N
Sbjct: 29 DDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADE---YQGKLTVAKL--NIDQN 83
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 84 PGTAPKYGIRGIPTLLLFKNG 104
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG CK +A ILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 48.9 bits (115), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG CK +A ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 372 ENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIA 431
E + +KV A D V +S K VL++F+A WCG K +AP+L+E+A + D+ +A
Sbjct: 7 EKSATIKVTDASFATD-VLSSNKPVLVDFWATWCGPSKMVAPVLEEIAT--ERATDLTVA 63
Query: 432 KFDATANDIPGDTFEVQGYPTVFF 455
K D N F+V PT+
Sbjct: 64 KLDVDTNPETARNFQVVSIPTLIL 87
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D +S + ++V+F+A WCG K +AP E+ A+E ++ + +AK+D + N
Sbjct: 16 DASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATD---LTVAKLDV--DTN 70
Query: 97 KELASQYEIRGFPTIKILRNG 117
E A +++ PT+ + ++G
Sbjct: 71 PETARNFQVVSIPTLILFKDG 91
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGH-CKKLAPILDEVAVSYQNDADVVIAKFDATAN 438
L DS V + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADEYQ--GKLTVAKLNIDQN 64
Query: 439 DIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 PGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107
Score = 48.9 bits (115), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGH-CKKLAPEYEKAASELSSHDPPVVLAKVDANEEA 95
D S +D + I+V+F+A WCG CK +AP ++ A E + + +AK+ N +
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIADE---YQGKLTVAKL--NIDQ 63
Query: 96 NKELASQYEIRGFPTIKILRNG 117
N A +Y IRG PT+ + +NG
Sbjct: 64 NPGTAPKYGIRGIPTLLLFKNG 85
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91
+V+ D F+ V+ +V+F+APWCG C+ ++P E+ A + H + + KV+
Sbjct: 34 WVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARD---HAGRLKVVKVNV 90
Query: 92 NEEANKELASQYEIRGFPTIKILRNGG 118
+E LA++Y +R PT+ + R G
Sbjct: 91 DEHPG--LAARYGVRSVPTLVLFRRGA 115
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--DTFEVQGYPT-V 453
L++F+APWCG C+ ++PIL+E+A + VV D + PG + V+ PT V
Sbjct: 54 LVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVD----EHPGLAARYGVRSVPTLV 109
Query: 454 FFRSAS 459
FR +
Sbjct: 110 LFRRGA 115
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE 446
D NSG+ + FY+P C HC LAP E A + D + I + + +
Sbjct: 108 DAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAK--EVDGLLRIGAVNCGDDRMLCRMKG 165
Query: 447 VQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 477
V YP++F + V Y GDR+KE +V F
Sbjct: 166 VNSYPSLFIFRSGMAAVKYNGDRSKESLVAF 196
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
++TL+ F V+ V FY+P C HC LAP + + A E+ D + + V+
Sbjct: 99 IITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEV---DGLLRIGAVNCG 155
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKS 150
++ + L + +P++ I R+G ++ Y G R + +V + + E+ +
Sbjct: 156 DD--RMLCRMKGVNSYPSLFIFRSGMAAVK-YNGDRSKESLVAFAMQHVRSTVTELST 210
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WCG K +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WCG K +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
L++F+A WCG CK +AP+L+E+A Y+ AD++ K D N +EV PT+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLI 78
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+A WCG CK +AP E+ A++ ++ + K+D +E N A++YE+ PT+
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAAD---YEGKADILKLDVDE--NPSTAAKYEVMSIPTL 77
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ ++ G+ + + G + + + E L K
Sbjct: 78 IVFKD-GQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
L++F+A WCG CK +AP+L+E+A Y+ AD++ K D N +EV PT+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLI 79
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+A WCG CK +AP E+ A++ ++ + K+D +E N A++YE+ PT+
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAAD---YEGKADILKLDVDE--NPSTAAKYEVMSIPTL 78
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ ++ G+ + + G + + + E L K
Sbjct: 79 IVFKD-GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 53.5 bits (127), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS + + +L++F+A WCG CK +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ +G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYIERGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 49.7 bits (117), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D V I+V+F+A WCG CK +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y RG PT+ + +NG
Sbjct: 64 PGTAPKYIERGIPTLLLFKNG 84
>pdb|4F9Z|D Chain D, Crystal Structure Of Human Erp27
pdb|4F9Z|A Chain A, Crystal Structure Of Human Erp27
pdb|4F9Z|B Chain B, Crystal Structure Of Human Erp27
pdb|4F9Z|C Chain C, Crystal Structure Of Human Erp27
pdb|4F9Z|E Chain E, Crystal Structure Of Human Erp27
Length = 227
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 22/208 (10%)
Query: 142 GPASAE----IKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQ 197
GP +A+ + A FI +V +IG F + ++ +K FG +
Sbjct: 4 GPGAAQEPTWLTDVPAAMEFIAATEVAVIGFFQDLEIPAVPILHSMVQKFPG-VSFGIST 62
Query: 198 NAKLLPRGESSVTGPVVRLFKPFDELFVDFKDFKVDA-----LEKFVEESSIPIVTVFNS 252
++++L ++TG + LF+ D ++ +D +++ L +F+E +S+ +VT +N
Sbjct: 63 DSEVLTH--YNITGNTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNP 120
Query: 253 DANNHPFVIKFFNSP-NAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGD--LE 309
VI FNS +L MN +S E +Y++ A+ ++G+ I F+L D ++
Sbjct: 121 VT-----VIGLFNSVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGMK 174
Query: 310 ASQGAFQYFGLQESQVPLIVI-QTNDGQ 336
+ +F L+ESQ+P + I QT D +
Sbjct: 175 ENGKVISFFKLKESQLPALAIYQTLDDE 202
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 33 VLTLDHSNFSDTVSKHNF-IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91
V+ + NF V K + ++V+F+APWCG C+ +AP E+ A E + V
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK-----VKVVKV 57
Query: 92 NEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140
N + N A+QY IR PT+ + +N G+ + G + + + E + K
Sbjct: 58 NVDENPNTAAQYGIRSIPTLLLFKN-GQVVDRLVGAQPKEALKERIDKH 105
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 389 VFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ 448
V S K VL++F+APWCG C+ +API++E+A Y+ VV D N + ++
Sbjct: 15 VLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNT--AAQYGIR 72
Query: 449 GYPTVFF 455
PT+
Sbjct: 73 SIPTLLL 79
>pdb|2PU9|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin F
pdb|2PVO|C Chain C, Crystal Srtucture Of The Ternary Complex Between
Thioredoxin F, Ferredoxin, And Ferredoxin: Thioredoxin
Reductase
Length = 111
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
+V++ + WCG K +AP+YEK A E V+ K+D N+E NK LA + IR PT
Sbjct: 27 VVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQE-NKTLAKELGIRVVPT 81
Query: 111 IKILR 115
KIL+
Sbjct: 82 FKILK 86
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 383 DSLQDMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435
D+ +V +G K V+L+ + WCG K +AP +++A Y DV+ K D
Sbjct: 13 DTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEY---LDVIFLKLDC 63
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
L++F+A WCG CK +AP+L+E+A Y+ AD++ K D N +EV PT+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLI 79
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+A WCG CK +AP E+ A++ ++ + K+D +E N A++YE+ PT+
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAAD---YEGKADILKLDVDE--NPSTAAKYEVMSIPTL 78
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ ++ G+ + + G + + + E L K
Sbjct: 79 IVFKD-GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K +++FYA WCG CK +APIL+E++ Y + I K + F +QG PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQGIPTI 109
Query: 454 FFRSASGKTVPYEGDRTKEDIVDFIE 479
+F G+ G +KE + +I+
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYID 135
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+FYA WCG CK +AP E+ + E + + + KV+ ++E ELA + I+G PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP--ELARDFGIQGIPTI 109
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG- 442
S ++ V S V+++F+APWCG K +AP++DE+A Y IA + ++ PG
Sbjct: 9 SWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGK----IAVYKLNTDEAPGI 64
Query: 443 -DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIE 479
+ ++ PTV F + G K + D IE
Sbjct: 65 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIE 102
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++V+F+APWCG K +AP ++ A E S + + K++ +E +A+QY IR PT
Sbjct: 21 VMVDFWAPWCGPSKLIAPVIDELAKEYSGK---IAVYKLNTDEAPG--IATQYNIRSIPT 75
Query: 111 IKILRNGGK 119
+ +NG +
Sbjct: 76 VLFFKNGER 84
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 2/102 (1%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L DS V + +L++F+A WC K +APILDE+A YQ + +AK + N
Sbjct: 7 LTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADEYQ--GKLTVAKLNIDQNP 64
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ ++G PT+ G +K + +F++ N
Sbjct: 65 GTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 106
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S +D + I+V+F+A WC K +AP ++ A E + + +AK+ N + N
Sbjct: 9 DDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIADE---YQGKLTVAKL--NIDQN 63
Query: 97 KELASQYEIRGFPTIKILRNG 117
A +Y IRG PT+ + +NG
Sbjct: 64 PGTAPKYGIRGIPTLLLFKNG 84
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
S F +++ +VV+FYA WCG K +AP EK S P K+D +E +
Sbjct: 15 SEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEK----FSEQYPQADFYKLDVDELG--D 68
Query: 99 LASQYEIRGFPTIKILRNG 117
+A + E+ PT+ + +NG
Sbjct: 69 VAQKNEVSAMPTLLLFKNG 87
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
D K V+++FYA WCG K +AP++++ + Y
Sbjct: 18 DSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQY 53
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+ ++ +F+APWCG K +AP E+ E+ + + K+D +E N+E A +Y +
Sbjct: 15 TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDE--NQETAGKYGV 69
Query: 106 RGFPTIKILRNG 117
PT+ +L++G
Sbjct: 70 MSIPTLLVLKDG 81
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
VL +F+APWCG K +AP+L+E+ + +V K D N + V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIV--KIDVDENQETAGKYGVMSIPTLL 76
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+ ++ +F+APWCG K +AP E+ E+ + + K+D +E N+E A +Y +
Sbjct: 15 TSEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDE--NQETAGKYGV 69
Query: 106 RGFPTIKILRNG 117
PT+ +L++G
Sbjct: 70 MSIPTLLVLKDG 81
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
VL +F+APWCG K +AP+L+E+ + +V K D N + V PT+
Sbjct: 20 VLADFWAPWCGPSKMIAPVLEELDQEMGDKLKIV--KIDVDENQETAGKYGVMSIPTLL 76
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K +++FYA WCG CK +APIL+E++ Y + I K + F +Q PT+
Sbjct: 52 KPAIVDFYADWCGPCKMVAPILEELSKEYA--GKIYIYKVNVDKEPELARDFGIQSIPTI 109
Query: 454 FFRSASGKTVPYEGDRTKEDIVDFIE 479
+F G+ G +KE + +I+
Sbjct: 110 WFVPMKGEPQVNMGALSKEQLKGYID 135
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+FYA WCG CK +AP E+ + E + + + KV+ ++E ELA + I+ PTI
Sbjct: 55 IVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP--ELARDFGIQSIPTI 109
>pdb|1WMJ|A Chain A, Solution Structure Of Thioredoxin Type H From Oryza Sativa
Length = 130
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
++++F A WCG C+ +AP + +E + P V KVD +E KE+A +Y + PT
Sbjct: 39 VIIDFTASWCGPCRFIAPVF----AEYAKKFPGAVFLKVDVDEL--KEVAEKYNVEAMPT 92
Query: 111 IKILRNGGKTIQEYKGPREAD---GIVEYLKKQSGPASA 146
+++G + + G R+ D IV+++ + ASA
Sbjct: 93 FLFIKDGAEA-DKVVGARKDDLQNTIVKHVGATAASASA 130
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYP 451
+GK V+++F A WCG C+ +AP+ E A + V K D + + V+ P
Sbjct: 35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPG---AVFLKVDVDELKEVAEKYNVEAMP 91
Query: 452 TVFF 455
T F
Sbjct: 92 TFLF 95
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106
K+ +VV+F+A WCG CK +AP +++ + + +D V VD EE A +Y I
Sbjct: 32 KNKLVVVDFFATWCGPCKTIAPLFKELSEK---YDAIFVKVDVDKLEET----ARKYNIS 84
Query: 107 GFPTIKILRNGGKT 120
PT ++NG K
Sbjct: 85 AMPTFIAIKNGEKV 98
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
+ K V+++F+A WCG CK +AP+ E++ Y D + K D + + +
Sbjct: 31 HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAM 86
Query: 451 PTVFFRSASGKTV 463
PT F +G+ V
Sbjct: 87 PT-FIAIKNGEKV 98
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 6/68 (8%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++A +Y IRG P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDA--QDVAPKYGIRGIP 75
Query: 110 TIKILRNG 117
T+ + +NG
Sbjct: 76 TLLLFKNG 83
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D + ++G PT+
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDAQDVAPKYGIRGIPTL 77
Query: 454 FFRSASGKTVPYEGDRTKEDIVDFIENN 481
G +K + +F++ N
Sbjct: 78 LLFKNGEVAATKVGALSKGQLKEFLDAN 105
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 9/75 (12%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELS-SHDPPVVLAKVDANEEANKELASQYEI 105
K+ +VV+F+A WCG CK +AP ++ ELS +D V VD EE A +Y I
Sbjct: 23 KNKLVVVDFFATWCGPCKTIAPLFK----ELSEKYDAIFVKVDVDKLEET----ARKYNI 74
Query: 106 RGFPTIKILRNGGKT 120
PT ++NG K
Sbjct: 75 SAMPTFIAIKNGEKV 89
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
+ K V+++F+A WCG CK +AP+ E++ Y D + K D + + +
Sbjct: 22 HKNKLVVVDFFATWCGPCKTIAPLFKELSEKY----DAIFVKVDVDKLEETARKYNISAM 77
Query: 451 PTVFFRSASGKTV 463
PT F +G+ V
Sbjct: 78 PT-FIAIKNGEKV 89
>pdb|1XFL|A Chain A, Solution Structure Of Thioredoxin H1 From Arabidopsis
Thaliana
Length = 124
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108
+VV+F A WCG C+ +AP + A +L P V+ KVD +E K +AS + I+
Sbjct: 39 TLVVVDFTASWCGPCRFIAPFFADLAKKL----PNVLFLKVDTDE--LKSVASDWAIQAM 92
Query: 109 PTIKILRNG 117
PT L+ G
Sbjct: 93 PTFMFLKEG 101
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
V+++F A WCG C+ +AP ++A N V+ K D + +Q PT F
Sbjct: 41 VVVDFTASWCGPCRFIAPFFADLAKKLPN---VLFLKVDTDELKSVASDWAIQAMPTFMF 97
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 38 HSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANK 97
+ F +V++F+A WCG CK + P +EK S+ + D V KVD +E++
Sbjct: 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEK-ISDTPAGD-KVGFYKVDVDEQS-- 78
Query: 98 ELASQYEIRGFPTIKILRNGGK 119
++A + IR PT +NG K
Sbjct: 79 QIAQEVGIRAMPTFVFFKNGQK 100
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT- 452
K V+++F+A WCG CK + P+ ++++ + D V K D ++ PT
Sbjct: 34 KVVVIDFWATWCGPCKMIGPVFEKISDTPAGD-KVGFYKVDVDEQSQIAQEVGIRAMPTF 92
Query: 453 VFFRSA 458
VFF++
Sbjct: 93 VFFKNG 98
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
L++F+A WCG K +AP+L+E+A Y+ AD++ K D N +EV PT+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLI 79
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+A WCG K +AP E+ A++ ++ + K+D +E N A++YE+ PT+
Sbjct: 24 LVDFWATWCGTSKMIAPVLEELAAD---YEGKADILKLDVDE--NPSTAAKYEVMSIPTL 78
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ ++ G+ + + G + + + E L K
Sbjct: 79 IVFKD-GQPVDKVVGFQPKENLAEVLDKH 106
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 42 SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELAS 101
S S +VV+F+A WCG CK +AP EK A + S K+D +E ++ +A
Sbjct: 20 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSDA----AFYKLDVDEVSD--VAQ 73
Query: 102 QYEIRGFPTIKILRNGGKTIQEYKGPREA 130
+ E+ PT+ I GGK + G A
Sbjct: 74 KAEVSSMPTL-IFYKGGKEVTRVVGANPA 101
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 387 DMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF 445
D SG K V+++F+A WCG CK +AP++++ A Y +D K D
Sbjct: 19 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKA 75
Query: 446 EVQGYPTVFF 455
EV PT+ F
Sbjct: 76 EVSSMPTLIF 85
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 42 SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELAS 101
S S +VV+F+A WCG CK +AP EK A + S K+D +E ++ +A
Sbjct: 13 SALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQYSD----AAFYKLDVDEVSD--VAQ 66
Query: 102 QYEIRGFPTIKILRNGGKTIQEYKGPREA 130
+ E+ PT+ I GGK + G A
Sbjct: 67 KAEVSSMPTL-IFYKGGKEVTRVVGANPA 94
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 387 DMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF 445
D SG K V+++F+A WCG CK +AP++++ A Y +D K D
Sbjct: 12 DSALASGDKLVVVDFFATWCGPCKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKA 68
Query: 446 EVQGYPTVFF 455
EV PT+ F
Sbjct: 69 EVSSMPTLIF 78
>pdb|3EC3|A Chain A, Crystal Structure Of The Bb Fragment Of Erp72
pdb|3EC3|B Chain B, Crystal Structure Of The Bb Fragment Of Erp72
Length = 250
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 114/250 (45%), Gaps = 30/250 (12%)
Query: 143 PASAEIKSAEDASSFIGE-KKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKL 201
P S EI + + F+ + VVI+GVF + Y A LR DY+F HT + ++
Sbjct: 6 PPSKEILTLKQVQEFLKDGDDVVILGVFQGVGDPGYLQYQDAANTLREDYKFHHTFSTEI 65
Query: 202 LPRGESSVTGPVVRLFKPFDELF---VDFKDFK----VDALEKFVEESSIPIV--TVFNS 252
+ S+ V+ + F + D + A++ +V + ++P+V ++
Sbjct: 66 AKFLKVSLGKLVLXQPEKFQSKYEPRXHVXDVQGSTEASAIKDYVVKHALPLVGHRKTSN 125
Query: 253 DANNH---PFVIKFFNSPNAKAMLFMNFSSE---GTEPIQSKYREVAEQYKGQGISFLLG 306
DA + P V+ +++ ++FS + T+ ++K EVA+ + +F +
Sbjct: 126 DAKRYSKRPLVVVYYS---------VDFSFDYRTATQFWRNKVLEVAKDFPE--YTFAIA 174
Query: 307 DLEASQGAFQYFGLQESQVPL-IVIQTNDGQKYLKP--NLDADQIAPWVKEYKEGKVPPF 363
D E + GL ES + I G+K+ D+D + +V +K+GK+ P
Sbjct: 175 DEEDYATEVKDLGLSESGGDVNAAILDESGKKFAXEPEEFDSDALREFVXAFKKGKLKPV 234
Query: 364 RKSEPIPEEN 373
KS+P+P+ N
Sbjct: 235 IKSQPVPKNN 244
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
VL++F+A WCG C++L IL +A + + DV K D N D + V P +FF
Sbjct: 26 VLVDFFATWCGPCQRLGQILPSIA---EANKDVTFIKVDVDKNGNAADAYGVSSIPALFF 82
Query: 456 RSASGKTV 463
G +
Sbjct: 83 VKKEGNEI 90
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
++V+F+A WCG C++L + ++ + V KVD ++ N A Y + P
Sbjct: 25 LVLVDFFATWCGPCQRLG----QILPSIAEANKDVTFIKVDVDKNGNA--ADAYGVSSIP 78
Query: 110 TIKILRNGG---KTIQEYKG 126
+ ++ G KT+ ++ G
Sbjct: 79 ALFFVKKEGNEIKTLDQFVG 98
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGH--------------CKKLAPILDEVAVSYQND 425
L DS V + +L++F+A WCG CK +APILDE+A YQ
Sbjct: 8 LTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ-- 65
Query: 426 ADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481
+ +AK + N + ++G PT+ G +K + +F++ N
Sbjct: 66 GKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 121
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGH--------------CKKLAPEYEKAASELSSHDP 82
D S +D + I+V+F+A WCG CK +AP ++ A E +
Sbjct: 10 DDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADE---YQG 66
Query: 83 PVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117
+ +AK+ N + N A +Y IRG PT+ + +NG
Sbjct: 67 KLTVAKL--NIDQNPGTAPKYGIRGIPTLLLFKNG 99
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 31 EFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD 90
+ L L NF + + + ++V+ +A WC C P Y+K A + + V +++
Sbjct: 4 DVTLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEK---YKGKAVFGRLN 60
Query: 91 ANEEANKELASQYEIRGFPTIKILRNG 117
+E N+++A +Y + PT I NG
Sbjct: 61 VDE--NQKIADKYSVLNIPTTLIFVNG 85
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN 96
D S D + ++V+F+A WCG C+++AP E A+E + V N + N
Sbjct: 12 DDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-----IEIVKLNIDEN 66
Query: 97 KELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLK 138
A++Y + PT+ + + GG+ + G + IV L+
Sbjct: 67 PGTAAKYGVMSIPTLNVYQ-GGEVAKTIVGAKPKAAIVRDLE 107
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436
+K + DS + V + K VL++F+A WCG C+++AP L+ +A Y + ++V K +
Sbjct: 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDKIEIV--KLNID 64
Query: 437 ANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIEN 480
N + V PT+ G + K IV +E+
Sbjct: 65 ENPGTAAKYGVMSIPTLNVYQGGEVAKTIVGAKPKAAIVRDLED 108
>pdb|1R26|A Chain A, Crystal Structure Of Thioredoxin From Trypanosoma Brucei
Brucei
Length = 125
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELA 100
F + +S+ V F A WCG CK + EK A E P V AKVDA+ N E+
Sbjct: 30 FRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEF----PTVKFAKVDADN--NSEIV 83
Query: 101 SQYEIRGFPTIKILRNG 117
S+ + PT I R+G
Sbjct: 84 SKCRVLQLPTFIIARSG 100
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 400 FYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSAS 459
F A WCG CK + ++++A + V AK DA N V PT F + S
Sbjct: 44 FTAVWCGPCKTIERPMEKIAYEFPT---VKFAKVDADNNSEIVSKCRVLQLPT-FIIARS 99
Query: 460 GKTV 463
GK +
Sbjct: 100 GKML 103
>pdb|3QDN|A Chain A, Putative Thioredoxin Protein From Salmonella Typhimurium
pdb|3QDN|B Chain B, Putative Thioredoxin Protein From Salmonella Typhimurium
Length = 287
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFY--APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD 90
++ ++ SN T+ + V FY + HC +L P E A++ + +LAK+D
Sbjct: 9 IVNINESNLQQTLEQSXTTPVLFYFWSERSQHCLQLTPVLESLAAQ---YHGQFILAKLD 65
Query: 91 ANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKK 139
+ A + +A+Q+ +R PT+ + +N G+ + ++GP+ + I L K
Sbjct: 66 CD--AEQXIAAQFGLRAIPTVYLFQN-GQPVDGFQGPQPEEAIRALLDK 111
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
VL F++ HC +L P+L+ +A Y ++AK D A F ++ PTV+
Sbjct: 29 VLFYFWSERSQHCLQLTPVLESLAAQYH--GQFILAKLDCDAEQXIAAQFGLRAIPTVYL 86
Query: 456 RSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKE 489
++G + +E I + DK P+E
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALL----DKVLPRE 116
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454
L++F+A CG CK +AP+L+E+A Y+ AD++ K D N +EV PT+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAADYEGKADIL--KLDVDENPSTAAKYEVMSIPTLI 78
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+A CG CK +AP E+ A++ ++ + K+D +E N A++YE+ PT+
Sbjct: 23 LVDFWATACGPCKMIAPVLEELAAD---YEGKADILKLDVDE--NPSTAAKYEVMSIPTL 77
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ ++ G+ + + G + + + E L K
Sbjct: 78 IVFKD-GQPVDKVVGFQPKENLAEVLDKH 105
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
++++F A WCG C+ +AP + + A + P + KVD +E K++A Y + P
Sbjct: 30 LVIIDFTASWCGPCRVIAPVFAEYAKKF----PGAIFLKVDVDEL--KDVAEAYNVEAMP 83
Query: 110 TIKILRNGGKTIQEYKGPREAD 131
T +++G K + G R+ D
Sbjct: 84 TFLFIKDGEK-VDSVVGGRKDD 104
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
++GK V+++F A WCG C+ +AP+ E A + + K D + + V+
Sbjct: 26 DTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG---AIFLKVDVDELKDVAEAYNVEAM 82
Query: 451 PTVFFRSASGKTVPYEGDRTKEDI 474
PT F K G R K+DI
Sbjct: 83 PTFLFIKDGEKVDSVVGGR-KDDI 105
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105
+ +V++F A WCG C+ +AP + ++L+ P V KVD +E K +A Q+ +
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVF----ADLAKKFPNAVFLKVDVDE--LKPIAEQFSV 85
Query: 106 RGFPTIKILRNG 117
PT ++ G
Sbjct: 86 EAMPTFLFMKEG 97
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
+ K V+++F A WCG C+ +AP+ ++A + N V K D + F V+
Sbjct: 32 TAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAM 88
Query: 451 PTVFF 455
PT F
Sbjct: 89 PTFLF 93
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD N+ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVND--CQDVASECEVKCMP 75
Query: 110 TIKILRNGGKTIQEYKGPRE 129
T + + G K + E+ G +
Sbjct: 76 TFQFFKKGQK-VGEFSGANK 94
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVNDCQDVASECEVKCMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|1TI3|A Chain A, Solution Structure Of The Thioredoxin H1 From Poplar, A
Cppc Active Site Variant
Length = 113
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 40 NFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKEL 99
+F IVV+F A WC CK +AP + +EL+ P V KVD +E K +
Sbjct: 18 HFEKGKGSQKLIVVDFTASWCPPCKMIAPIF----AELAKKFPNVTFLKVDVDE--LKAV 71
Query: 100 ASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141
A ++ + PT L++ GK + + G + DG+ + K +
Sbjct: 72 AEEWNVEAMPTFIFLKD-GKLVDKTVG-ADKDGLPTLVAKHA 111
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
S K ++++F A WC CK +API E+A + N V K D + + V+
Sbjct: 24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN---VTFLKVDVDELKAVAEEWNVEAM 80
Query: 451 PTVFF 455
PT F
Sbjct: 81 PTFIF 85
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKE 98
+ F + + +++ +V++FYA WCG CK + P K L P V K D +E + +
Sbjct: 21 TEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTK----LIQAYPDVRFVKCDVDE--SPD 74
Query: 99 LASQYEIRGFPTIKILRNG---GKTI 121
+A + E+ PT + ++G GK I
Sbjct: 75 IAKECEVTAMPTFVLGKDGQLIGKII 100
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT 452
++++FYA WCG CK + P L ++ +Y DV K D + EV PT
Sbjct: 33 LVIDFYATWCGPCKMMQPHLTKLIQAY---PDVRFVKCDVDESPDIAKECEVTAMPT 86
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
++ F A WCG CK++AP Y ELS + P ++ +D +E + + ++ +EI+ P
Sbjct: 48 IVLANFSARWCGPCKQIAPYY----IELSENYPSLMFLVIDVDELS--DFSASWEIKATP 101
Query: 110 TIKILRNG 117
T LR+G
Sbjct: 102 TFFFLRDG 109
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 13/68 (19%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVI-----AKFDATANDIPGDTFEV 447
GK VL F A WCG CK++AP E++ +Y + +VI + F A ++E+
Sbjct: 46 GKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSA--------SWEI 97
Query: 448 QGYPTVFF 455
+ PT FF
Sbjct: 98 KATPTFFF 105
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKSMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASESEVKSMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-TANDIPGDTFEVQGYPT 452
K V+++F A WCG CK + P ++ Y N V+ + D D+ ++ EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASES-EVKSMPT 76
Query: 453 VFFRSASGKTVPYEG 467
F K + G
Sbjct: 77 FQFFKKGQKVGEFSG 91
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
VV+FYAPWCG C+ APE+E A + V KVD +A + + I+ +P++
Sbjct: 25 VVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDC--QAYPQTCQKAGIKAYPSV 79
Query: 112 KI 113
K+
Sbjct: 80 KL 81
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 11/104 (10%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L + + V + +++FYAPWCG C+ AP + +A + V K D A
Sbjct: 8 LTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK--GKVRAGKVDCQAYP 65
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRD 483
++ YP+V Y+ +R K+ I + N+RD
Sbjct: 66 QTCQKAGIKAYPSVKL---------YQYERAKKSIWEEQINSRD 100
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 387 DMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE 446
D NSG+ + FY+P H LAP E A + D + I + + +
Sbjct: 127 DAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAK--EVDGLLRIGAVNCGDDRMLCRMKG 184
Query: 447 VQGYPTVFFRSASGKTVPYEGDRTKEDIVDF 477
V YP++F + V Y GDR+KE +V F
Sbjct: 185 VNSYPSLFIFRSGMAAVKYNGDRSKESLVAF 215
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+V+F+APW + L PE KA++ L + + +D ++ L + Y I+ +PT
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCT--IHEGLCNMYNIQAYPTT 513
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQSGPA 144
+ +I EY+G A+ I+E+++ P+
Sbjct: 514 VVFNQS--SIHEYEGHHSAEQILEFIEDLRNPS 544
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT-VFF 455
L++F+APW + L P L + + + + D T ++ + + +Q YPT V F
Sbjct: 459 LVDFFAPWSPPSRALLPELRKASTLLY--GQLKVGTLDCTIHEGLCNMYNIQAYPTTVVF 516
Query: 456 RSASGKTVPYEGDRTKEDIVDFIENNRD 483
+S YEG + E I++FIE+ R+
Sbjct: 517 NQSS--IHEYEGHHSAEQILEFIEDLRN 542
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
++TL+ F V+ V FY+P H LAP + + A E+ D + + V+
Sbjct: 118 IITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEV---DGLLRIGAVNCG 174
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSA 151
++ + L + +P++ I R+G ++ Y G R + +V + + E+ +
Sbjct: 175 DD--RMLCRMKGVNSYPSLFIFRSGMAAVK-YNGDRSKESLVAFAMQHVRSTVTELSTG 230
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
VV+FYAPW G + APE+E A + V KVD +A + + I+ +P++
Sbjct: 679 VVDFYAPWSGPSQNFAPEFELLARMIKG---KVRAGKVDC--QAYPQTCQKAGIKAYPSV 733
Query: 112 KILR--NGGKTIQEYK-GPREADGIVEYLKKQSGPASAEIKSAED 153
K+ + K+I E + R+A I + + +++K +D
Sbjct: 734 KLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETLQSQVKRNKD 778
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 8/84 (9%)
Query: 33 VLTLDHSNFSDTV--SKHNFI-VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
V++L S F++ V KH+ + +V+FY+PW + L PE+++ A L+ + + V
Sbjct: 545 VVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG---LINVGSV 601
Query: 90 DANEEANKELASQYEIRGFPTIKI 113
D + +Q ++ +P I+
Sbjct: 602 DCGQY--HSFCTQENVQRYPEIRF 623
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND 439
L + + V + +++FYAPW G + AP + +A + V K D A
Sbjct: 662 LTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK--GKVRAGKVDCQAYP 719
Query: 440 IPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRD 483
++ YP+V Y+ +R K+ I + N+RD
Sbjct: 720 QTCQKAGIKAYPSVKL---------YQYERAKKSIWEEQINSRD 754
>pdb|4DSS|B Chain B, Crystal Structure Of Peroxiredoxin Ahp1 From Saccharomyces
Cerevisiae In Complex With Thioredoxin Trx2
Length = 112
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELAS 101
S S +VV+F+A WCG K +AP EK A + S K+D +E ++ +A
Sbjct: 21 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD----AAFYKLDVDEVSD--VAQ 74
Query: 102 QYEIRGFPTIKILRNGGKTIQEYKGPREA 130
+ E+ PT+ I GGK + G A
Sbjct: 75 KAEVSSMPTL-IFYKGGKEVTRVVGANPA 102
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 387 DMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF 445
D SG K V+++F+A WCG K +AP++++ A Y +D K D
Sbjct: 20 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKA 76
Query: 446 EVQGYPTVFF 455
EV PT+ F
Sbjct: 77 EVSSMPTLIF 86
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASEXEVKCMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASEXEVKCMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|3PIN|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 104
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 42 SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELAS 101
S S +VV+F+A WCG K +AP EK A + S K+D +E ++ +A
Sbjct: 13 SALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQYSD----AAFYKLDVDEVSD--VAQ 66
Query: 102 QYEIRGFPTIKILRNGGKTIQEYKGPREA 130
+ E+ PT+ I GGK + G A
Sbjct: 67 KAEVSSMPTL-IFYKGGKEVTRVVGANPA 94
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 387 DMVFNSG-KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF 445
D SG K V+++F+A WCG K +AP++++ A Y +D K D
Sbjct: 12 DSALASGDKLVVVDFFATWCGPSKMIAPMIEKFAEQY---SDAAFYKLDVDEVSDVAQKA 68
Query: 446 EVQGYPTVFF 455
EV PT+ F
Sbjct: 69 EVSSMPTLIF 78
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKCMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 35 TLDHSNFSDTVSKH-NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+L S+F V +H + I++ F WC CKK+ P +E+ AS++ + A +DA E
Sbjct: 3 SLSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQMEGD---IRFAYMDA-E 58
Query: 94 EANKELASQYEIRGFPTIKILRNG 117
+A K +A + IR P++ + +G
Sbjct: 59 DAEKTMA-ELNIRTLPSLALFVDG 81
Score = 35.8 bits (81), Expect = 0.064, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV-F 454
+++ F WC CKK+ P +E+A Q + D+ A DA + ++ P++
Sbjct: 20 IIIMFTGSWCQPCKKMKPTFEEMAS--QMEGDIRFAYMDAEDAEKTMAELNIRTLPSLAL 77
Query: 455 FRSASGKTVPYEGDRTKEDIVDFIENN 481
F + V + G K D+ +I NN
Sbjct: 78 FVDGMIREV-FSGTMNKSDLRYWINNN 103
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + LS V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIFLEVDVDDA--QDVASEAEVKATP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-TANDIPGDTFEVQGYPT 452
K V+++F A WCG CK + P ++ Y N V+ + D A D+ + EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDAQDVASEA-EVKATPT 76
Query: 453 VFFRSASGKTVPYEG 467
F K + G
Sbjct: 77 FQFFKKGQKVGEFSG 91
>pdb|3QOU|A Chain A, Crystal Structure Of E. Coli Ybbn
Length = 287
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 8/105 (7%)
Query: 31 EFVLTLDHSNFSDTVSKHNFIVVEFY--APWCGHCKKLAPEYEKAASELSSHDPPVVLAK 88
E ++ ++ SN + + V FY + HC +L P E A++ ++ +LAK
Sbjct: 7 ENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAAQ---YNGQFILAK 63
Query: 89 VDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGI 133
+D + A + +A+Q+ +R PT+ + +N G+ + ++GP+ + I
Sbjct: 64 LDCD--AEQMIAAQFGLRAIPTVYLFQN-GQPVDGFQGPQPEEAI 105
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
VL F++ HC +L PIL+ +A Y + ++AK D A + F ++ PTV+
Sbjct: 29 VLFYFWSERSQHCLQLTPILESLAAQY--NGQFILAKLDCDAEQMIAAQFGLRAIPTVYL 86
Query: 456 RSASGKTVPYEGDRTKEDIVDFIENNRDKAAPKE 489
++G + +E I + D P+E
Sbjct: 87 FQNGQPVDGFQGPQPEEAIRALL----DXVLPRE 116
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 6/97 (6%)
Query: 389 VFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ 448
V + + VL+ F+A WCG C+ ++P+++ A +Y + VV K + N ++V+
Sbjct: 21 VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVV--KLEIDPNPTTVKKYKVE 78
Query: 449 GYPTVFFRSASGKTV--PYEGDRTKEDIVDFIENNRD 483
G P R G+ + EG +K+ ++ F++ + +
Sbjct: 79 GVPA--LRLVKGEQILDSTEGVISKDKLLSFLDTHLN 113
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 33 VLTLDHSNF-SDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91
V+T+ + F S+ + ++V F+A WCG C+ ++P AA+ S VV ++D
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP 67
Query: 92 NEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137
N K +Y++ G P +++++ G + + +G D ++ +L
Sbjct: 68 NPTTVK----KYKVEGVPALRLVK-GEQILDSTEGVISKDKLLSFL 108
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKCTP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKCTPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|3KD0|A Chain A, Human Thioredoxin C35s,C62s,C69s,C73s Mutant Showing
Cadmium Chloride Bound To The Active Site
Length = 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG K + P + + + S+ V+ +VD ++ ++++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDD--SQDVASESEVKSMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-TANDIPGDTFEVQGYPT 452
K V+++F A WCG K + P ++ Y N V+ + D + D+ ++ EV+ PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDSQDVASES-EVKSMPT 76
Query: 453 VFFRSASGKTVPYEG 467
F K + G
Sbjct: 77 FQFFKKGQKVGEFSG 91
>pdb|3BJ5|A Chain A, Alternative Conformations Of The X Region Of Human Protein
Disulphide- Isomerase Modulate Exposure Of The Substrate
Binding B' Domain
Length = 147
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 255 NNHPFVIKFFNSPNAKA---------MLFMNFSSEGTEPIQSKYREVAEQYKGQGI-SFL 304
N P VI+F K +LF+ S + S ++ AE +KG+ + +F+
Sbjct: 11 NQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGKILFAFI 70
Query: 305 LGDLEASQGAFQYFGLQESQVPLI-VIQTNDGQKYLKPN---LDADQIAPWVKEYKEGKV 360
D +Q ++FGL++ + P + +I + KP L A++I + + EGK+
Sbjct: 71 DSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKI 130
Query: 361 PPFRKSEPIPEE 372
P S+ +PE+
Sbjct: 131 KPHLMSQELPED 142
>pdb|2IWT|A Chain A, Thioredoxin H2 (Hvtrxh2) In A Mixed Disulfide Complex With
The Target Protein Basi
Length = 125
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108
+V++F A WCG + +AP + ++L+ P V KVD +E K +A Q+ +
Sbjct: 38 KLVVIDFTASWCGPSRIMAPVF----ADLAKKFPNAVFLKVDVDE--LKPIAEQFSVEAM 91
Query: 109 PTIKILRNG 117
PT ++ G
Sbjct: 92 PTFLFMKEG 100
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450
+ K V+++F A WCG + +AP+ ++A + N V K D + F V+
Sbjct: 35 TAKKLVVIDFTASWCGPSRIMAPVFADLAKKFPN---AVFLKVDVDELKPIAEQFSVEAM 91
Query: 451 PTVFF 455
PT F
Sbjct: 92 PTFLF 96
>pdb|1MDI|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Mutant Human Thioredoxin And A 13
Residue Peptide Comprising Its Target Site In Human Nfkb
pdb|1MDJ|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (c35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1MDK|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Nfkb (Residues 56-68 Of The P50
Subunit Of Nfkb)
pdb|1CQH|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, Minimized Average Structure
pdb|1CQG|A Chain A, High Resolution Solution Nmr Structure Of Mixed Disulfide
Intermediate Between Human Thioredoxin (C35a, C62a,
C69a, C73a) Mutant And A 13 Residue Peptide Comprising
Its Target Site In Human Ref-1 (Residues 59-71 Of The
P50 Subunit Of Nfkb), Nmr, 31 Structures
Length = 105
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG K + P + LS V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPAKMIKPFFH----SLSEKYSNVIFLEVDVDDA--QDVASEAEVKATP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-TANDIPGDTFEVQGYPT 452
K V+++F A WCG K + P ++ Y N V+ + D A D+ + EV+ PT
Sbjct: 21 KLVVVDFSATWCGPAKMIKPFFHSLSEKYSN---VIFLEVDVDDAQDVASEA-EVKATPT 76
Query: 453 VFFRSASGKTVPYEG 467
F K + G
Sbjct: 77 FQFFKKGQKVGEFSG 91
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD 443
+ V +S K V++ FY+P C +CK P +E A Y + A V + + N +
Sbjct: 15 TWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYAKEYGSSA--VFGRINIATNPWTAE 72
Query: 444 TFEVQGYPTVFF 455
+ VQG PT F
Sbjct: 73 KYGVQGTPTFKF 84
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
+VV FY+P C +CK P +E+ A E S V ++ N N A +Y ++G PT
Sbjct: 27 VVVXFYSPACPYCKAXEPYFEEYAKEYGSS---AVFGRI--NIATNPWTAEKYGVQGTPT 81
Query: 111 IKILRNG 117
K +G
Sbjct: 82 FKFFCHG 88
>pdb|3QFA|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFA|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|C Chain C, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
pdb|3QFB|D Chain D, Crystal Structure Of The Human Thioredoxin
Reductase-Thioredoxin Complex
Length = 116
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG K + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 33 LVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKSMP 86
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 87 TFQFFKKGQK-VGEFSG 102
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG K + P ++ Y N V+ + D EV+ PT
Sbjct: 32 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKSMPTF 88
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 89 QFFKKGQKVGEFSG 102
>pdb|3D22|A Chain A, Crystal Structure Of A Poplar Thioredoxin H Mutant,
Pttrxh4c61s
Length = 139
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 6/68 (8%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
++ F A WCG +++AP Y ELS + P ++ +D +E + + ++ +EI+ P
Sbjct: 48 IVLANFSARWCGPSRQIAPYY----IELSENYPSLMFLVIDVDELS--DFSASWEIKATP 101
Query: 110 TIKILRNG 117
T LR+G
Sbjct: 102 TFFFLRDG 109
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVI-----AKFDATANDIPGDTFEV 447
GK VL F A WCG +++AP E++ +Y + +VI + F A ++E+
Sbjct: 46 GKIVLANFSARWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFSA--------SWEI 97
Query: 448 QGYPTVFF 455
+ PT FF
Sbjct: 98 KATPTFFF 105
>pdb|3UL3|B Chain B, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
pdb|3UL3|A Chain A, Structural Insights Into Thioredoxin-2: A Component Of
Malaria Parasite Protein Secretion Machinery
Length = 128
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 34 LTLDHSNFSDTVS-KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
L + SN + V+ K+ IV+ F+A WC C + E +K + L KVD +
Sbjct: 27 LQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLD 83
Query: 93 EEANKELASQYEIRGFPTIKILRN 116
+ N+ LA ++ ++ PTI +L+N
Sbjct: 84 K--NESLARKFSVKSLPTIILLKN 105
Score = 30.0 bits (66), Expect = 3.0, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455
++L F+A WC C + +D++ Y + + K D N+ F V+ PT+
Sbjct: 45 IVLYFFAKWCQACTMQSTEMDKLQKYYGK--RIYLLKVDLDKNESLARKFSVKSLPTIIL 102
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108
+ +VV F+APW C ++ + +EL+ P V K++A E E++ +YEI
Sbjct: 33 SLLVVHFWAPWAPQCAQM----NEVMAELAKELPQVSFVKLEA--EGVPEVSEKYEISSV 86
Query: 109 PTIKILRNGGK 119
PT +N K
Sbjct: 87 PTFLFFKNSQK 97
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 382 ADSLQDMVFNSGKNVLL-EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440
A ++++ K++L+ F+APW C ++ ++ E+A + V K +A
Sbjct: 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPE 76
Query: 441 PGDTFEVQGYPTVFFRSASGKTVPYEGDRTKE 472
+ +E+ PT F S K +G E
Sbjct: 77 VSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE 108
>pdb|3E3E|A Chain A, Human Thioredoxin Double Mutant C35s,C73r
pdb|3E3E|B Chain B, Human Thioredoxin Double Mutant C35s,C73r
Length = 105
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG K + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKRMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG K + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPSKMIKPFFHSLSEKYSN---VIFLEVDVDDCQDVASECEVKRMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|2FWE|A Chain A, Crystal Structure Of The C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd (Oxidized Form)
pdb|2FWF|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Reduced Form)
pdb|2FWG|A Chain A, High Resolution Crystal Structure Of The C-Terminal Domain
Of The Electron Transfer Catalyst Dsbd (Photoreduced
Form)
pdb|2FWH|A Chain A, Atomic Resolution Crystal Structure Of The C-Terminal
Domain Of The Electron Transfer Catalyst Dsbd (Reduced
Form At Ph7)
Length = 134
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 386 QDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--- 442
Q +V GK V+L+ YA WC CK+ + AD V+ + + TAND
Sbjct: 24 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVAL 83
Query: 443 -DTFEVQGYPTVFFRSASGKTVP 464
V G PT+ F G+ P
Sbjct: 84 LKHLNVLGLPTILFFDGQGQEHP 106
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLA------PEYEKAASELSSHDPPVVL 86
+ T+D N + +K ++++ YA WC CK+ P+ +KA + D ++
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQ 70
Query: 87 AKVDANEEANKELASQYEIRGFPTIKILRNGGK 119
A V AN+ + L + G PTI G+
Sbjct: 71 ANVTANDAQDVALLKHLNVLGLPTILFFDGQGQ 103
>pdb|1UC7|A Chain A, Crystal Structure Of Dsbdgamma
pdb|1UC7|B Chain B, Crystal Structure Of Dsbdgamma
Length = 125
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 386 QDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--- 442
Q +V GK V+L+ YA WC CK+ + AD V+ + + TAND
Sbjct: 21 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVAL 80
Query: 443 -DTFEVQGYPTVFFRSASGKTVP 464
V G PT+ F G+ P
Sbjct: 81 LKHLNVLGLPTILFFDGQGQEHP 103
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLA------PEYEKAASELSSHDPPVVL 86
+ T+D N + +K ++++ YA WC CK+ P+ +KA + D ++
Sbjct: 13 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQ 67
Query: 87 AKVDANEEANKELASQYEIRGFPTIKILRNGGK 119
A V AN+ + L + G PTI G+
Sbjct: 68 ANVTANDAQDVALLKHLNVLGLPTILFFDGQGQ 100
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108
+ +VV F+APW C ++ + +EL+ P V K++A E E++ +YEI
Sbjct: 39 SLLVVHFWAPWAPQCAQM----NEVMAELAKELPQVSFVKLEA--EGVPEVSEKYEISSV 92
Query: 109 PTIKILRNGGK 119
PT +N K
Sbjct: 93 PTFLFFKNSQK 103
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 382 ADSLQDMVFNSGKNVLL-EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440
A ++++ K++L+ F+APW C ++ ++ E+A + V K +A
Sbjct: 26 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELA---KELPQVSFVKLEAEGVPE 82
Query: 441 PGDTFEVQGYPTVFFRSASGKTVPYEGDRTKE 472
+ +E+ PT F S K +G E
Sbjct: 83 VSEKYEISSVPTFLFFKNSQKIDRLDGAHAPE 114
>pdb|2KUC|A Chain A, Solution Structure Of A Putative Disulphide-Isomerase From
Bacteroides Thetaiotaomicron
Length = 130
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108
+ V+ + WCG CK+L+ K + + V K+D + EL +Y + +
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAY 87
Query: 109 PTIKILRNGGKTIQEYKGPREADGIVEYLK 138
PT+ + + G+ + G +A +++ +K
Sbjct: 88 PTLLFINSSGEVVYRLVGAEDAPELLKKVK 117
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 394 KNVLLEFYAPWCGHCKKLAPIL--DEVAVSYQNDADVVIAKFDATANDIP--GDTFEVQG 449
K + ++ + WCG CK+L+ ++ D + Y N V + K D + + V
Sbjct: 28 KLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNL-KMDMEKGEGVELRKKYGVHA 86
Query: 450 YPTVFFRSASGKTV 463
YPT+ F ++SG+ V
Sbjct: 87 YPTLLFINSSGEVV 100
>pdb|1ZZO|A Chain A, Structure Of Mtb Dsbf In Its Oxidized Form
Length = 136
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT 452
GK +L F+APWC C+ AP++ +VA S+ V +A D +P V YP
Sbjct: 25 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD----QVPAMQEFVNKYPV 80
Query: 453 VFF 455
F
Sbjct: 81 KTF 83
Score = 32.0 bits (71), Expect = 0.86, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE 94
TLD +F V+ F+APWC C+ AP ++++ P V V ++
Sbjct: 12 TLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAP----VVGQVAASHPEVTFVGVAGLDQ 67
Query: 95 --ANKELASQYEIRGF 108
A +E ++Y ++ F
Sbjct: 68 VPAMQEFVNKYPVKTF 83
>pdb|3IOS|A Chain A, Structure Of Mtb Dsbf In Its Mixed Oxidized And Reduced
Forms
Length = 150
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT 452
GK +L F+APWC C+ AP++ +VA S+ V +A D +P V YP
Sbjct: 39 GKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD----QVPAMQEFVNKYPV 94
Query: 453 VFF 455
F
Sbjct: 95 KTF 97
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE 94
TLD +F V+ F+APWC C+ AP ++++ P V V ++
Sbjct: 26 TLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAP----VVGQVAASHPEVTFVGVAGLDQ 81
Query: 95 --ANKELASQYEIRGF 108
A +E ++Y ++ F
Sbjct: 82 VPAMQEFVNKYPVKTF 97
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILD-EVAVSYQNDADVVIAKFD 434
GK V+L+F A WCG C+K P ++ ++ + ++++AD + D
Sbjct: 33 GKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGID 75
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 31 EFVLTL-DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV 89
+F +TL D + + + ++++F A WCG C+K P EK + L +
Sbjct: 15 DFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGI 74
Query: 90 DANEEANKELA 100
D +E K LA
Sbjct: 75 DRDEPLEKVLA 85
>pdb|3D6I|A Chain A, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
pdb|3D6I|B Chain B, Structure Of The Thioredoxin-Like Domain Of Yeast
Glutaredoxin 3
Length = 112
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELA 100
+ T + IV+ F+ W CK L +E ++E S+ + V +DA+E N E++
Sbjct: 14 LTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADE--NSEIS 69
Query: 101 SQYEIRGFPTIKILRNGGKTIQEYKG--PREADGIVE 135
+EI P I+ G ++E G P+E ++E
Sbjct: 70 ELFEISAVPYFIIIHK-GTILKELSGADPKEYVSLLE 105
>pdb|3GL3|A Chain A, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|B Chain B, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|C Chain C, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
pdb|3GL3|D Chain D, Crystal Structure Of A Putative Thiol:disulfide
Interchange Protein Dsbe From Chlorobium Tepidum
Length = 152
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-EANKELAS-------- 101
+ ++F+A WCG C++ P + ++ + VV +DA +A K LA
Sbjct: 31 VYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAEFTVA 90
Query: 102 ---------QYEIRGFPTIKILRNGGKTIQEYKGPREAD 131
Y ++G PT ++ GK + ++ G R AD
Sbjct: 91 FDPKGQTPRLYGVKGXPTSFLIDRNGKVLLQHVGFRPAD 129
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 21/93 (22%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDA-DVVIAKFDATAND-------IPGD 443
+G V L+F+A WCG C++ P ++ Y+ VV DA D +P +
Sbjct: 27 TGSVVYLDFWASWCGPCRQSFPWXNQXQAKYKAKGFQVVAVNLDAKTGDAXKFLAQVPAE 86
Query: 444 -------------TFEVQGYPTVFFRSASGKTV 463
+ V+G PT F +GK +
Sbjct: 87 FTVAFDPKGQTPRLYGVKGXPTSFLIDRNGKVL 119
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A WCG CK + P + LS V+ ++ + + +++AS+ E++ P
Sbjct: 22 LVVVDFSATWCGPCKMIKPFFH----SLSEKYSNVIF--LEVDVDDXQDVASEXEVKCMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453
K V+++F A WCG CK + P ++ Y N V+ + D EV+ PT
Sbjct: 21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSN---VIFLEVDVDDXQDVASEXEVKCMPTF 77
Query: 454 FFRSASGKTVPYEG 467
F K + G
Sbjct: 78 QFFKKGQKVGEFSG 91
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 373 NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAK 432
N ++ L ++ + ++++ GK L+ F C C+K+ P+L+E+ ++Y+
Sbjct: 2 NAXSLEKLDTNTFEQLIYDEGKACLVXFSRKNCHVCQKVTPVLEELRLNYEESFGFYYV- 60
Query: 433 FDATANDIPGDTFEVQGYPTV-FFRSA--SGKTV-PYEGDRTKEDIVDFIEN 480
D F ++G P + +F+ GK E D ++ I D +E+
Sbjct: 61 -DVEEEKTLFQRFSLKGVPQILYFKDGEYKGKXAGDVEDDEVEQXIADVLED 111
>pdb|1GH2|A Chain A, Crystal Structure Of The Catalytic Domain Of A New Human
Thioredoxin-Like Protein
Length = 107
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
VV+F CG C ++AP + S +S+ P V +VD ++ + A+ I PT
Sbjct: 25 VVKFTMRGCGPCLRIAPAF----SSMSNKYPQAVFLEVDVHQ--CQGTAATNNISATPTF 78
Query: 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140
+ RN + I +Y+G +A G+ E +K+
Sbjct: 79 QFFRNKVR-IDQYQGA-DAVGLEEKIKQH 105
>pdb|1ERW|A Chain A, Human Thioredoxin Double Mutant With Cys 32 Replaced By
Ser And Cys 35 Replaced By Ser
Length = 105
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 7/77 (9%)
Query: 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109
+VV+F A W G K + P + + + S+ V+ +VD ++ +++AS+ E++ P
Sbjct: 22 LVVVDFSATWSGPSKMIKPFFHSLSEKYSN----VIFLEVDVDD--CQDVASECEVKCMP 75
Query: 110 TIKILRNGGKTIQEYKG 126
T + + G K + E+ G
Sbjct: 76 TFQFFKKGQK-VGEFSG 91
>pdb|4EVM|A Chain A, 1.5 Angstrom Crystal Structure Of Soluble Domain Of
Membrane-Anchored Thioredoxin Family Protein From
Streptococcus Pneumoniae Strain Canada Mdr_19a
Length = 138
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 27/131 (20%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN 92
++ +D + + K + ++F+A WC C P+ ++ A E + D VVL V
Sbjct: 7 LMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKE--AGDDYVVLTVVSPG 64
Query: 93 EEANK-------------------------ELASQYEIRGFPTIKILRNGGKTIQEYKGP 127
+ + +L Y +R +PT + GK ++ + G
Sbjct: 65 HKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGF 124
Query: 128 READGIVEYLK 138
E D I++ LK
Sbjct: 125 MEKDAILQTLK 135
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVV 429
GK V L+F+A WC C P DE+A +D V+
Sbjct: 22 GKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVL 58
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELS 78
+H IVV+F A WCG CK +AP +E +++ +
Sbjct: 23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA 54
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
K ++++F A WCG CK +AP+ + ++ Y
Sbjct: 25 KPIVVDFTATWCGPCKMIAPLFETLSNDY 53
>pdb|1VRS|D Chain D, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|E Chain E, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
pdb|1VRS|F Chain F, Crystal Structure Of The Disulfide-Linked Complex Between
The N- Terminal And C-Terminal Domain Of The Electron
Transfer Catalyst Dsbd
Length = 134
Score = 36.6 bits (83), Expect = 0.036, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 386 QDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--- 442
Q +V GK V+L+ YA WC K+ + AD V+ + + TAND
Sbjct: 24 QALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVAL 83
Query: 443 -DTFEVQGYPTVFFRSASGKTVP 464
V G PT+ F G+ P
Sbjct: 84 LKHLNVLGLPTILFFDGQGQEHP 106
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLA------PEYEKAASELSSHDPPVVL 86
+ T+D N + +K ++++ YA WC K+ P+ +KA + D ++
Sbjct: 16 IKTVDELNQALVEAKGKPVMLDLYADWCVASKEFEKYTFSDPQVQKALA-----DTVLLQ 70
Query: 87 AKVDANEEANKELASQYEIRGFPTIKILRNGGK 119
A V AN+ + L + G PTI G+
Sbjct: 71 ANVTANDAQDVALLKHLNVLGLPTILFFDGQGQ 103
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 36.6 bits (83), Expect = 0.037, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 7/120 (5%)
Query: 369 IPEENNEPVKV--LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY---Q 423
+ + P +V L ++ +V + K+V + +Y PW H + D++++S +
Sbjct: 7 VANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKR 66
Query: 424 NDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYE--GDRTKEDIVDFIENN 481
N V A+ D + V G+PT+ + + K P+E G R + F+ N
Sbjct: 67 NHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN 126
>pdb|1KNG|A Chain A, Crystal Structure Of Ccmg Reducing Oxidoreductase At 1.14
A
Length = 156
Score = 36.2 bits (82), Expect = 0.038, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 359 KVPPFRKSEPIPEENNEPVKVLVADSLQ----DMVFNSGKNVLLEFYAPWCGHCKKLAPI 414
++P P P+ P++ L AD++Q D GK L+ +A WC C AP+
Sbjct: 4 RIPSALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPL 63
Query: 415 LDE---------VAVSYQNDAD 427
L E V ++Y++ AD
Sbjct: 64 LTELGKDKRFQLVGINYKDAAD 85
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 44/125 (35%), Gaps = 17/125 (13%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN-- 92
TL N S + ++V F+A WC +C+ P ++ D V+ V+
Sbjct: 28 TLSGENKSLAQYRGKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLAVNVEKRFP 87
Query: 93 -------------EEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADG--IVEYL 137
+A ++ +Y P I+ G Q G E D +V YL
Sbjct: 88 EKYRRAPVSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYL 147
Query: 138 KKQSG 142
K G
Sbjct: 148 KSLEG 152
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIA 431
GK VL+ F+A WC +C+ P D + S+ VV+A
Sbjct: 41 GKIVLVNFWASWCPYCRDEXPSXDRLVKSFPKGDLVVLA 79
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 35.8 bits (81), Expect = 0.059, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELS 78
+H IVV F A WCG CK +AP +E +++ +
Sbjct: 23 EHKPIVVAFTATWCGPCKMIAPLFETLSNDYA 54
Score = 32.7 bits (73), Expect = 0.53, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
K +++ F A WCG CK +AP+ + ++ Y
Sbjct: 25 KPIVVAFTATWCGPCKMIAPLFETLSNDY 53
>pdb|3DVW|A Chain A, Crystal Structure Of Reduced Dsba1 From Neisseria
Meningitidis
Length = 193
Score = 35.0 bits (79), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND 425
+GK +LEF+ +C HC L P+L + A S+++D
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD 56
>pdb|3A3T|A Chain A, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|B Chain B, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|C Chain C, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|D Chain D, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|E Chain E, The Oxidoreductase Nmdsba1 From N. Meningitidis
pdb|3A3T|F Chain F, The Oxidoreductase Nmdsba1 From N. Meningitidis
Length = 210
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND 425
+GK +LEF+ +C HC L P+L + A S+++D
Sbjct: 39 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD 73
>pdb|3HZ8|A Chain A, Crystal Structure Of The Oxidized T176v Dsba1 Mutant
Length = 193
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND 425
+GK +LEF+ +C HC L P+L + A S+++D
Sbjct: 22 QAGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD 56
>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major
Length = 165
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 358 GKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE 417
G VP + + E +K+ DM SGK V F A WC C+ P L E
Sbjct: 13 GLVPRGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVE 72
Query: 418 VAVSYQN--DADVVIAKFDATANDI 440
+ + + ++++A +D +D
Sbjct: 73 FYEKHHDSKNFEIILASWDEEEDDF 97
>pdb|3C73|A Chain A, Structure Of Cehc Variant Resa
pdb|3C73|B Chain B, Structure Of Cehc Variant Resa
Length = 140
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILD-----------EVAVSYQNDADVVIAKF-DATANDI 440
GK V L F+ WC HCKK P + E+ ++ + + F + +
Sbjct: 23 GKGVFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNF 82
Query: 441 PG---------DTFEVQGYPTVFFRSASGKTVP-YEGDRTKEDIVDFI 478
P D ++V PT F + GK V G T+ I D++
Sbjct: 83 PVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 130
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE----------------- 93
+ + F+ WC HCKK P S +V V ++
Sbjct: 26 VFLNFWGTWCEHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 85
Query: 94 -EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137
+ ++++ Y++ PT ++ GK ++ G I +Y+
Sbjct: 86 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 130
>pdb|3C71|A Chain A, Struture Of A Resa Variant With A Dsba-Like Active Site
Motif (Cphc)
Length = 143
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILD-----------EVAVSYQNDADVVIAKF-DATANDI 440
GK V L F+ WC HCKK P + E+ ++ + + F + +
Sbjct: 26 GKGVFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNF 85
Query: 441 PG---------DTFEVQGYPTVFFRSASGKTVP-YEGDRTKEDIVDFI 478
P D ++V PT F + GK V G T+ I D++
Sbjct: 86 PVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 18/105 (17%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE----------------- 93
+ + F+ WC HCKK P S +V V ++
Sbjct: 29 VFLNFWGTWCPHCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 94 -EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137
+ ++++ Y++ PT ++ GK ++ G I +Y+
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 34.3 bits (77), Expect = 0.15, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 32/61 (52%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106
K +I ++ +A WCG C+ P ++ + + D V D N++A + + ++ +++
Sbjct: 29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLK 88
Query: 107 G 107
G
Sbjct: 89 G 89
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY 422
SL D+ GK + ++ +A WCG C+ P L E+ Y
Sbjct: 24 SLADL---KGKYIYIDVWATWCGPCRGELPALKELEEKY 59
>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
pdb|1JFU|B Chain B, Crystal Structure Of The Soluble Domain Of Tlpa From
Bradyrhizobium Japonicum
Length = 186
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEV 418
GK +L+ +A WC C+K P LDE+
Sbjct: 60 GKTLLVNLWATWCVPCRKEMPALDEL 85
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93
+ ++V +A WC C+K P ++ +LS + VV +D +
Sbjct: 59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRD 105
>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei
Length = 144
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQ--NDADVVIAKFDATAND 439
SL +V GK V L F A WC C+ P+L E + + +VV+ +D +D
Sbjct: 22 SLGSLV---GKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESD 76
>pdb|1LU4|A Chain A, 1.1 Angstrom Resolution Crystal Structure Of A Secreted
Mycobacterium Tuberculosis Disulfide Oxidoreductase
Homologous To E. Coli Dsbe: Implications For Functions
Length = 136
Score = 32.7 bits (73), Expect = 0.48, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVS 421
GK +L F+ PWC C AP L +VA +
Sbjct: 24 GKPAVLWFWTPWCPFCNAEAPSLSQVAAA 52
>pdb|3HA9|A Chain A, The 1.7a Crystal Structure Of A Thioredoxin-like Protein
From Aeropyrum Pernix
Length = 165
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYP 451
G V+L F A WC C +A +LD + Y+ + + I + A A G GYP
Sbjct: 37 GDVVILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFWTAEALKALG--LNKPGYP 93
>pdb|2DJ0|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Related Transmembrane Protein 2
Length = 137
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111
+VEF+A W C+ AP Y A L + + KVD +++++Y++ P
Sbjct: 30 IVEFFANWSNDCQSFAPIY--ADLSLKYNCTGLNFGKVDVGRYT--DVSTRYKVSTSPLT 85
Query: 112 K-----ILRNGGK 119
K IL GGK
Sbjct: 86 KQLPTLILFQGGK 98
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 397 LLEFYAPWCGHCKKLAPILDEVAVSYQ 423
++EF+A W C+ API ++++ Y
Sbjct: 30 IVEFFANWSNDCQSFAPIYADLSLKYN 56
>pdb|1VU2|F Chain F, The 8s Snrnp Assembly Intermediate
pdb|1VU2|N Chain N, The 8s Snrnp Assembly Intermediate
pdb|1VU2|V Chain V, The 8s Snrnp Assembly Intermediate
pdb|1VU2|DD Chain d, The 8s Snrnp Assembly Intermediate
pdb|1VU2|LL Chain l, The 8s Snrnp Assembly Intermediate
pdb|1VU2|TT Chain t, The 8s Snrnp Assembly Intermediate
pdb|1VU2|2 Chain 2, The 8s Snrnp Assembly Intermediate
pdb|1VU3|F Chain F, The 8s Snrnp Assembly Intermediate
pdb|1VU3|N Chain N, The 8s Snrnp Assembly Intermediate
pdb|1VU3|V Chain V, The 8s Snrnp Assembly Intermediate
pdb|1VU3|DD Chain d, The 8s Snrnp Assembly Intermediate
pdb|1VU3|LL Chain l, The 8s Snrnp Assembly Intermediate
pdb|1VU3|TT Chain t, The 8s Snrnp Assembly Intermediate
pdb|4F77|N Chain N, The 8s Snrnp Assembly Intermediate
pdb|4F77|F Chain F, The 8s Snrnp Assembly Intermediate
pdb|4F77|V Chain V, The 8s Snrnp Assembly Intermediate
pdb|4F77|DD Chain d, The 8s Snrnp Assembly Intermediate
pdb|4F77|LL Chain l, The 8s Snrnp Assembly Intermediate
pdb|4F77|TT Chain t, The 8s Snrnp Assembly Intermediate
pdb|4F77|2 Chain 2, The 8s Snrnp Assembly Intermediate
Length = 247
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 359 KVPPFRKSEPIPEENNEPVKVLVADSLQDMVF----------NSGKNVLLEFYAPWCGHC 408
++PPF+ P PE +E VK A Q +V SG+ L W C
Sbjct: 76 ELPPFKCLLPTPEWRDEQVKSFQAARSQVLVLRKELANNNYDQSGEPPLTSDQEKWKEFC 135
Query: 409 KKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEV 447
+ P+L + QND ++++ D P T ++
Sbjct: 136 RNQQPLLSTLLHLTQNDLELLLEMLSKWLQD-PNTTVDL 173
>pdb|1FO5|A Chain A, Solution Structure Of Reduced Mj0307
Length = 85
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 55 FYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114
F +P C HC P ++ E+++ P V + N N + A +Y I PTI I
Sbjct: 9 FTSPMCPHC----PAAKRVVEEVANEMPDAVEVEY-INVMENPQKAMEYGIMAVPTIVI- 62
Query: 115 RNGGKTIQEYKGPREADGIVEYLKKQ 140
NG E+ G + +VE +KK+
Sbjct: 63 -NGD---VEFIGAPTKEALVEAIKKR 84
>pdb|3ERW|A Chain A, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|B Chain B, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|C Chain C, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|D Chain D, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|E Chain E, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|F Chain F, Crystal Structure Of Stoa From Bacillus Subtilis
pdb|3ERW|G Chain G, Crystal Structure Of Stoa From Bacillus Subtilis
Length = 145
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 21/106 (19%)
Query: 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE----------ANK---- 97
++ F+ WC CKK P+++ S +V + +E+ ANK
Sbjct: 38 ILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFP 97
Query: 98 -------ELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEY 136
EL +Y I PT +L G+ + GP A+ + E+
Sbjct: 98 IVLDSKGELXKEYHIITIPTSFLLNEKGEIEKTKIGPXTAEQLKEW 143
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAP 413
N G+ +L F+ WC CKK P
Sbjct: 32 NKGQKTILHFWTSWCPPCKKELP 54
>pdb|2B1K|A Chain A, Crystal Structure Of E. Coli Ccmg Protein
Length = 168
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 360 VPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE-- 417
VP FR E + P + AD V GK VLL +A WC C+ L++
Sbjct: 28 VPKFRL-----ESLDNPGQFYQAD-----VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
Query: 418 ------VAVSYQNDADVVIAKFDATAN----------DIPGDTFEVQGYPTVFFRSASG 460
V ++Y++D I+ N + G V G P F +G
Sbjct: 78 AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNG 136
>pdb|2ZNM|A Chain A, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|B Chain B, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|C Chain C, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
pdb|2ZNM|D Chain D, Oxidoreductase Nmdsba3 From Neisseria Meningitidis
Length = 195
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDA 426
SGK +LEF+ +C HC P+L ++ + +DA
Sbjct: 20 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDA 55
>pdb|3K8N|A Chain A, Crystal Structure Of E. Coli Ccmg
Length = 185
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 360 VPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE-- 417
VP FR E + P + AD V GK VLL +A WC C+ L++
Sbjct: 45 VPKFRL-----ESLDNPGQFYQAD-----VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 94
Query: 418 ------VAVSYQNDADVVIAKFDATAN----------DIPGDTFEVQGYPTVFFRSASG 460
V ++Y++D I+ N + G V G P F +G
Sbjct: 95 AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNG 153
>pdb|3OR5|A Chain A, Crystal Structure Of Thiol:disulfide Interchange
Protein, Thioredoxin Family Protein From Chlorobium
Tepidum Tls
Length = 165
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSH 80
+T+D FS K +V F+A WC C+ P+ + +S
Sbjct: 20 VTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDXVQVQKTWASR 66
>pdb|3DVX|A Chain A, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
pdb|3DVX|B Chain B, Crystal Structure Of Reduced Dsba3 From Neisseria
Meningitidis
Length = 196
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDA 426
SGK +LEF+ +C HC P+L ++ + +DA
Sbjct: 21 QSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDA 56
>pdb|2H1B|A Chain A, Resa E80q
pdb|2H1B|B Chain B, Resa E80q
pdb|2H1B|C Chain C, Resa E80q
pdb|2H1B|D Chain D, Resa E80q
Length = 143
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPIL 415
GK V L F+ WC CKK P +
Sbjct: 26 GKGVFLNFWGTWCEPCKKQFPYM 48
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE----------------- 93
+ + F+ WC CKK P S +V V ++
Sbjct: 29 VFLNFWGTWCEPCKKQFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 94 -EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137
+ ++++ Y++ PT ++ GK ++ G I +Y+
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
>pdb|2G0F|A Chain A, Crystal Structure Of P144a Mutant Of E.Coli Ccmg Protein
Length = 168
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 360 VPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE-- 417
VP FR E + P + AD V GK VLL +A WC C+ L++
Sbjct: 28 VPKFRL-----ESLDNPGQFYQAD-----VLTQGKPVLLNVWATWCPTCRAEHQYLNQLS 77
Query: 418 ------VAVSYQNDADVVIAKFDATANDIPGDTFEVQG 449
V ++Y++D I+ N F+ G
Sbjct: 78 AQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDG 115
>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1O81|B Chain B, Tryparedoxin Ii From C.fasciculata Solved By Sulphur
Phasing
pdb|1OC9|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
pdb|1OC8|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEV--AVSYQNDADVVIAKFDATANDI 440
+GK V F A WC C+ P L + A + + + +V++ +D +A D
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDF 80
>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
pdb|1O6J|B Chain B, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur
Phasing
Length = 150
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEV--AVSYQNDADVVIAKFDATANDI 440
+GK V F A WC C+ P L + A + + + +V++ +D +A D
Sbjct: 28 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDF 78
>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii
pdb|1FG4|B Chain B, Structure Of Tryparedoxin Ii
Length = 149
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEV--AVSYQNDADVVIAKFDATANDI 440
+GK V F A WC C+ P L + A + + + +V++ +D +A D
Sbjct: 27 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDF 77
>pdb|1ST9|A Chain A, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1ST9|B Chain B, Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|1SU9|A Chain A, Reduced Structure Of The Soluble Domain Of Resa
pdb|1SU9|B Chain B, Reduced Structure Of The Soluble Domain Of Resa
pdb|2H1D|A Chain A, Resa Ph 9.25
pdb|2H1D|B Chain B, Resa Ph 9.25
Length = 143
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 22/108 (20%)
Query: 393 GKNVLLEFYAPWCGHCKKLAPILD-----------EVAVSYQNDADVVIAKF-DATANDI 440
GK V L F+ WC CKK P + E+ ++ + + F + +
Sbjct: 26 GKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNF 85
Query: 441 PG---------DTFEVQGYPTVFFRSASGKTVP-YEGDRTKEDIVDFI 478
P D ++V PT F + GK V G T+ I D++
Sbjct: 86 PVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 18/105 (17%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE----------------- 93
+ + F+ WC CKK P S +V V ++
Sbjct: 29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVV 88
Query: 94 -EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137
+ ++++ Y++ PT ++ GK ++ G I +Y+
Sbjct: 89 LDTDRQVLDAYDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYM 133
>pdb|2M46|A Chain A, Solution Nmr Structure Of Sacol0876 From Staphylococcus
Aureus Col, Nesg Target Zr353 And Csgid Target Idp00841
Length = 142
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 386 QDMVFNSGKNVLLEFYA-PWCGHCKKLAPILDEVAVSYQ 423
+++ F S N +++FY C CKK A LDE VSY+
Sbjct: 16 ENLYFQS--NAMIKFYQYKNCTTCKKAAKFLDEYGVSYE 52
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110
IV++F A WC C K+ EY K ++L+ + + VD + + + +L Q+ I+ PT
Sbjct: 43 IVIKFGAVWCKPCNKI-KEYFK--NQLNYY----YVTLVDIDVDIHPKLNDQHNIKALPT 95
Query: 111 IKI---LRNGGKTIQEYKGPREAD 131
+ L N + +G + D
Sbjct: 96 FEFYFNLNNEWVLVHTVEGANQND 119
>pdb|2B5X|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Reduced Form
pdb|2B5Y|A Chain A, Solution Structure Of A Thioredoxin-Like Protein In The
Oxidized Form
Length = 148
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 367 EPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDA 426
+P+PE E K + + K L+ F++ C CK+ P ++E YQ+
Sbjct: 5 QPMPELTGE--KAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQL 62
Query: 427 DVVIAKFDATANDI-PG 442
+VV + +D+ PG
Sbjct: 63 NVVAVHMPRSEDDLDPG 79
>pdb|2H30|A Chain A, Crystal Structure Of The N-Terminal Domain Of Pilb From
Neisseria Gonorrhoeae
Length = 164
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAA--SELSSHDPPVVLAKVDAN 92
T D+ S + K +++F+A WC C + EK A ++ SS + V + +
Sbjct: 25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLH 84
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQE 123
E+ + E Y +P + ++ + G TI +
Sbjct: 85 EKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQ 115
>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr
Length = 152
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEV--AVSYQNDADVVIAKFDATANDI 440
+GK V F A WC C+ P L + A + + +V++ +D +A D
Sbjct: 30 AGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDESAEDF 80
>pdb|2F9S|A Chain A, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
pdb|2F9S|B Chain B, 2nd Crystal Structure Of A Soluble Domain Of Resa In The
Oxidised Form
Length = 151
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 393 GKNVLLEFYAPWCGHCKKLAP 413
GK V L F+ WC CKK P
Sbjct: 26 GKGVFLNFWGTWCEPCKKEFP 46
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 29.3 bits (64), Expect = 4.7, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 22/103 (21%)
Query: 44 TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELS------SHDP--------------P 83
TVSK IV F+A WC CK P + A E S +P P
Sbjct: 28 TVSKPAVIV--FWASWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYP 85
Query: 84 VVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG 126
+ + ++ + E+A+++++ G P ++ GK + + G
Sbjct: 86 RFIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALFAG 128
>pdb|2B1L|A Chain A, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
pdb|2B1L|B Chain B, Crystal Structure Of N-Terminal 57 Residue Deletion Mutant
Of E. Coli Ccmg Protein(Residues 58-185)
Length = 129
Score = 29.3 bits (64), Expect = 5.0, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 18/93 (19%)
Query: 386 QDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE--------VAVSYQNDADVVIAKFDATA 437
Q V GK VLL +A WC C+ L++ V ++Y++D I+
Sbjct: 5 QADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELG 64
Query: 438 NDIPGDTFE----------VQGYPTVFFRSASG 460
N F+ V G P F +G
Sbjct: 65 NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNG 97
>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange
Protein From Bacteroides Sp.
pdb|4GRF|A Chain A, Crystal Structure Of Thioredoxin Domain Of Thiol-Disulfide
Oxidoreductase Bvu-2223 (Target Efi-501010) From
Bacteroides Vulgatus
Length = 152
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 32/107 (29%)
Query: 47 KHNFIVVEFYAPWCGHCKKLAP--------------------------EYEKAASELSSH 80
K +++V+F+ C C+K P +++KA E S+
Sbjct: 28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSY 87
Query: 81 DPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTI-QEYKG 126
V+L K D K++ Y I GFP I ++ GK + +E +G
Sbjct: 88 WNQVLLQKDDV-----KDVLESYCIVGFPHIILVDPEGKIVAKELRG 129
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 20/136 (14%)
Query: 110 TIKILRNGGKTIQ-EYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGV 168
T K++R+ + I +Y+ P G++ Y+ P A +++ DA
Sbjct: 50 TSKLIRSELELIGIKYRYPVAITGVIGYIGTGEPPFVA-LRADMDA-------------- 94
Query: 169 FPNFSGEEFENYTALAEKLRSDYEFGHTQ----NAKLLPRGESSVTGPVVRLFKPFDELF 224
P G E+E+ + +A K+ + GH AK+L + G VV +F+P +E
Sbjct: 95 LPIQEGVEWEHKSKIAGKMHACGHDGHVTMLLGAAKILHEHRHHLQGTVVLIFQPAEEGL 154
Query: 225 VDFKDFKVDALEKFVE 240
K + + K VE
Sbjct: 155 SGAKKMREEGALKNVE 170
>pdb|2JZR|A Chain A, Solution Structure Of The Oxidized Form (Cys67-Cys70) Of
The N-Terminal Domain Of Pilb From N. Meningitidis.
pdb|2JZS|A Chain A, Solution Structure Of The Reduced Form Of The N-Terminal
Domain Of Pilb From N. Meningitidis.
pdb|2K9F|A Chain A, Structural Features Of The Complex Between The Dsbd N-
Terminal And The Pilb N-Terminal Domains From Neisseria
Meningitidis
Length = 144
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAA--SELSSHDPPVVLAKVDAN 92
T D+ S + K +++F+A WC C + EK A ++ SS + V + +
Sbjct: 11 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 70
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQE 123
E+ + + Y +P + ++ + G TI +
Sbjct: 71 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ 101
>pdb|2FY6|A Chain A, Structure Of The N-Terminal Domain Of Neisseria
Meningitidis Pilb
Length = 143
Score = 29.3 bits (64), Expect = 5.8, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAA--SELSSHDPPVVLAKVDAN 92
T D+ S + K +++F+A WC C + EK A ++ SS + V + +
Sbjct: 10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLH 69
Query: 93 EEANKELASQYEIRGFPTIKILRNGGKTIQE 123
E+ + + Y +P + ++ + G TI +
Sbjct: 70 EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQ 100
>pdb|2DJK|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP2|A Chain A, Solution Structure Of The B' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 133
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 271 AMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVI 330
A +F + E E + K + +AE +G I+F D +A L+ + P I
Sbjct: 27 AYIFAETAEERKE-LSDKLKPIAEAQRGV-INFGTIDAKAFGAHAGNLNLKTDKFPAFAI 84
Query: 331 Q-TNDGQKY---LKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEEN 373
Q QK+ + + + I +V ++ GK+ P KSEPIPE+
Sbjct: 85 QEVAKNQKFPFDQEKEITFEAIKAFVDDFVAGKIEPSIKSEPIPEKQ 131
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY- 450
SG +++ + WCG CK L P E + + V+ + D GY
Sbjct: 38 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYI 97
Query: 451 PTVFFRSASGKTVP 464
P + F SGK P
Sbjct: 98 PRILFLDPSGKVHP 111
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAA--SELS 78
++V + WCG CK L P++ ++ SELS
Sbjct: 42 LMVIIHKSWCGACKALKPKFAESTEISELS 71
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY- 450
SG +++ + WCG CK L P E + + V+ + D GY
Sbjct: 45 SGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYI 104
Query: 451 PTVFFRSASGKTVP 464
P + F SGK P
Sbjct: 105 PRILFLDPSGKVHP 118
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 51 IVVEFYAPWCGHCKKLAPEYEKAA--SELS 78
++V + WCG CK L P++ ++ SELS
Sbjct: 49 LMVIIHKSWCGACKALKPKFAESTEISELS 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,791,854
Number of Sequences: 62578
Number of extensions: 646732
Number of successful extensions: 1958
Number of sequences better than 100.0: 217
Number of HSP's better than 100.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1439
Number of HSP's gapped (non-prelim): 409
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)