Query 010824
Match_columns 500
No_of_seqs 205 out of 3648
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 04:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 1.8E-70 3.9E-75 520.9 41.4 459 28-500 22-493 (493)
2 PTZ00102 disulphide isomerase; 100.0 3.2E-61 7E-66 488.0 51.5 442 28-500 29-477 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 3E-59 6.4E-64 473.1 48.3 444 32-488 2-460 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 2.8E-36 6E-41 261.8 24.9 320 36-368 1-331 (375)
5 PF01216 Calsequestrin: Calseq 100.0 5.3E-32 1.1E-36 240.7 28.9 322 27-362 30-374 (383)
6 KOG4277 Uncharacterized conser 100.0 1.9E-32 4.2E-37 237.4 22.0 311 30-359 27-354 (468)
7 KOG0191 Thioredoxin/protein di 99.9 4.3E-23 9.4E-28 201.3 23.7 331 37-477 36-373 (383)
8 PF13848 Thioredoxin_6: Thiore 99.9 3.6E-21 7.8E-26 169.4 16.6 178 169-354 1-184 (184)
9 cd03006 PDI_a_EFP1_N PDIa fami 99.9 4.1E-21 8.9E-26 151.1 11.3 102 30-137 8-113 (113)
10 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.7E-20 3.7E-25 147.1 10.9 100 32-137 2-101 (101)
11 cd02996 PDI_a_ERp44 PDIa famil 99.8 4.4E-20 9.6E-25 146.6 11.1 104 32-137 2-108 (108)
12 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 8.4E-20 1.8E-24 144.1 10.8 101 32-137 2-104 (104)
13 PTZ00443 Thioredoxin domain-co 99.8 3.8E-19 8.2E-24 156.8 13.7 106 30-141 29-139 (224)
14 PF00085 Thioredoxin: Thioredo 99.8 4.2E-19 9.1E-24 140.2 12.6 102 33-140 1-103 (103)
15 cd03006 PDI_a_EFP1_N PDIa fami 99.8 4.4E-19 9.6E-24 139.5 10.9 104 373-478 7-113 (113)
16 KOG0910 Thioredoxin-like prote 99.8 4.6E-19 1E-23 141.1 9.1 106 376-483 44-149 (150)
17 KOG0191 Thioredoxin/protein di 99.8 1E-17 2.2E-22 163.6 20.4 215 259-485 39-255 (383)
18 cd02994 PDI_a_TMX PDIa family, 99.8 1.9E-18 4E-23 135.6 11.7 100 32-139 2-101 (101)
19 cd03007 PDI_a_ERp29_N PDIa fam 99.8 1.3E-18 2.8E-23 135.6 9.8 99 33-140 3-115 (116)
20 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.6E-18 5.7E-23 136.9 11.5 103 33-138 2-109 (109)
21 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.3E-18 7.2E-23 134.6 10.8 101 33-137 2-102 (102)
22 PF00085 Thioredoxin: Thioredo 99.8 2.1E-18 4.6E-23 136.1 9.2 103 377-481 1-103 (103)
23 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.6E-18 5.6E-23 134.6 9.4 99 376-477 2-100 (101)
24 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 2.1E-18 4.5E-23 136.1 8.5 101 376-478 2-104 (104)
25 cd03065 PDI_b_Calsequestrin_N 99.8 6.2E-18 1.4E-22 133.7 11.0 106 29-141 7-119 (120)
26 cd02993 PDI_a_APS_reductase PD 99.8 5.3E-18 1.1E-22 134.5 10.6 102 32-137 2-109 (109)
27 KOG0910 Thioredoxin-like prote 99.8 5.2E-18 1.1E-22 135.2 9.4 105 32-142 44-149 (150)
28 cd03001 PDI_a_P5 PDIa family, 99.7 1.5E-17 3.2E-22 131.2 11.4 100 33-137 2-102 (103)
29 TIGR01126 pdi_dom protein disu 99.7 2.3E-17 4.9E-22 129.9 11.3 101 36-140 1-101 (102)
30 cd02963 TRX_DnaJ TRX domain, D 99.7 1.8E-17 3.9E-22 131.6 10.4 100 35-139 8-110 (111)
31 cd02996 PDI_a_ERp44 PDIa famil 99.7 1E-17 2.2E-22 132.9 8.6 102 376-478 2-108 (108)
32 TIGR02187 GlrX_arch Glutaredox 99.7 1.2E-16 2.7E-21 142.9 16.5 192 264-480 17-214 (215)
33 cd02999 PDI_a_ERp44_like PDIa 99.7 2.7E-17 5.8E-22 127.7 9.4 84 46-137 16-100 (100)
34 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.1E-17 8.8E-22 129.0 10.7 101 377-478 2-104 (104)
35 cd02997 PDI_a_PDIR PDIa family 99.7 4.5E-17 9.7E-22 128.7 11.0 103 33-137 2-104 (104)
36 PRK09381 trxA thioredoxin; Pro 99.7 9.6E-17 2.1E-21 127.7 12.7 105 31-141 3-108 (109)
37 PHA02278 thioredoxin-like prot 99.7 4.1E-17 8.8E-22 126.2 10.1 95 38-136 4-100 (103)
38 cd03065 PDI_b_Calsequestrin_N 99.7 2.1E-17 4.6E-22 130.7 8.7 105 375-482 9-119 (120)
39 COG3118 Thioredoxin domain-con 99.7 3.3E-17 7.2E-22 145.1 10.6 108 30-143 22-132 (304)
40 cd02998 PDI_a_ERp38 PDIa famil 99.7 5.8E-17 1.3E-21 128.3 11.1 102 33-137 2-105 (105)
41 PRK10996 thioredoxin 2; Provis 99.7 8.4E-17 1.8E-21 133.0 12.4 106 30-141 34-139 (139)
42 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 5.4E-17 1.2E-21 128.2 10.9 102 32-137 1-104 (104)
43 cd03002 PDI_a_MPD1_like PDI fa 99.7 2.7E-17 5.8E-22 131.1 9.0 101 377-479 2-109 (109)
44 PRK09381 trxA thioredoxin; Pro 99.7 8.5E-17 1.8E-21 128.0 11.4 106 375-482 3-108 (109)
45 cd02962 TMX2 TMX2 family; comp 99.7 1.5E-16 3.3E-21 131.7 12.9 92 30-126 27-126 (152)
46 cd02956 ybbN ybbN protein fami 99.7 1E-16 2.3E-21 124.3 11.3 93 40-138 2-96 (96)
47 cd02994 PDI_a_TMX PDIa family, 99.7 7.2E-17 1.6E-21 126.5 10.4 100 376-480 2-101 (101)
48 cd03000 PDI_a_TMX3 PDIa family 99.7 1.4E-16 3.1E-21 125.3 11.5 97 39-140 7-103 (104)
49 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.2E-16 2.5E-21 125.8 9.5 100 377-478 2-102 (102)
50 cd03001 PDI_a_P5 PDIa family, 99.7 1.2E-16 2.6E-21 125.9 9.6 100 377-478 2-102 (103)
51 cd02961 PDI_a_family Protein D 99.7 1.3E-16 2.7E-21 125.4 9.2 100 35-137 2-101 (101)
52 cd02992 PDI_a_QSOX PDIa family 99.7 3.3E-16 7.2E-21 124.7 11.6 103 32-134 2-109 (114)
53 cd02954 DIM1 Dim1 family; Dim1 99.7 1.2E-16 2.7E-21 124.0 8.7 87 39-131 3-91 (114)
54 TIGR01126 pdi_dom protein disu 99.7 1.1E-16 2.4E-21 125.9 8.7 102 380-482 1-102 (102)
55 cd02948 TRX_NDPK TRX domain, T 99.7 3.1E-16 6.7E-21 122.6 10.9 97 36-139 5-101 (102)
56 cd02963 TRX_DnaJ TRX domain, D 99.7 9.2E-17 2E-21 127.6 8.0 101 379-480 8-110 (111)
57 cd02956 ybbN ybbN protein fami 99.7 1.6E-16 3.5E-21 123.3 8.6 95 383-479 1-96 (96)
58 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.8E-16 6.2E-21 124.3 9.9 102 377-478 2-105 (105)
59 TIGR02187 GlrX_arch Glutaredox 99.7 9.6E-15 2.1E-19 130.7 20.6 189 48-354 19-214 (215)
60 PTZ00443 Thioredoxin domain-co 99.7 2.3E-16 5.1E-21 139.2 9.3 110 374-485 29-142 (224)
61 PHA02278 thioredoxin-like prot 99.7 1.7E-16 3.8E-21 122.7 7.4 93 382-477 4-100 (103)
62 cd02993 PDI_a_APS_reductase PD 99.7 4.8E-16 1E-20 123.2 9.9 102 376-478 2-109 (109)
63 cd02985 TRX_CDSP32 TRX family, 99.7 7.3E-16 1.6E-20 120.7 10.5 96 38-139 3-101 (103)
64 cd02954 DIM1 Dim1 family; Dim1 99.7 1.5E-16 3.2E-21 123.6 6.4 96 382-479 2-108 (114)
65 cd02997 PDI_a_PDIR PDIa family 99.7 5.2E-16 1.1E-20 122.6 9.7 101 377-478 2-104 (104)
66 cd02953 DsbDgamma DsbD gamma f 99.7 5.6E-16 1.2E-20 122.1 9.7 97 39-138 2-104 (104)
67 cd02999 PDI_a_ERp44_like PDIa 99.7 4.7E-16 1E-20 120.6 8.5 90 385-478 9-100 (100)
68 cd02950 TxlA TRX-like protein 99.6 1.8E-15 4E-20 125.3 12.2 103 37-142 9-111 (142)
69 PRK10996 thioredoxin 2; Provis 99.6 7.5E-16 1.6E-20 127.3 9.8 105 375-482 35-139 (139)
70 COG3118 Thioredoxin domain-con 99.6 4.8E-16 1E-20 137.8 9.0 107 376-484 24-132 (304)
71 cd02965 HyaE HyaE family; HyaE 99.6 1.4E-15 3E-20 117.2 10.3 96 33-134 12-109 (111)
72 TIGR00424 APS_reduc 5'-adenyly 99.6 1.1E-15 2.5E-20 148.3 12.3 109 29-139 349-461 (463)
73 TIGR01068 thioredoxin thioredo 99.6 1.9E-15 4.1E-20 118.7 11.2 100 36-141 1-101 (101)
74 KOG1731 FAD-dependent sulfhydr 99.6 6.1E-15 1.3E-19 141.0 14.5 221 30-252 38-285 (606)
75 TIGR01068 thioredoxin thioredo 99.6 1.8E-15 4E-20 118.7 9.1 100 381-482 2-101 (101)
76 PLN02309 5'-adenylylsulfate re 99.6 2.7E-15 5.8E-20 145.7 12.0 107 30-140 344-456 (457)
77 cd02948 TRX_NDPK TRX domain, T 99.6 2.1E-15 4.5E-20 118.0 8.8 96 381-480 6-101 (102)
78 cd02957 Phd_like Phosducin (Ph 99.6 4.3E-15 9.4E-20 118.5 10.7 88 32-127 5-95 (113)
79 cd02989 Phd_like_TxnDC9 Phosdu 99.6 1E-14 2.2E-19 115.8 11.0 88 33-127 6-94 (113)
80 cd02985 TRX_CDSP32 TRX family, 99.6 4.4E-15 9.6E-20 116.2 8.8 95 382-480 3-101 (103)
81 cd03000 PDI_a_TMX3 PDIa family 99.6 8.4E-15 1.8E-19 115.2 10.0 96 383-481 7-103 (104)
82 cd02957 Phd_like Phosducin (Ph 99.6 7.2E-15 1.6E-19 117.3 9.3 100 375-478 4-112 (113)
83 cd03007 PDI_a_ERp29_N PDIa fam 99.6 3.4E-15 7.4E-20 116.4 6.9 98 377-481 3-115 (116)
84 cd02961 PDI_a_family Protein D 99.6 4.5E-15 9.8E-20 116.4 7.7 99 379-478 2-101 (101)
85 cd02962 TMX2 TMX2 family; comp 99.6 8.6E-15 1.9E-19 121.3 9.5 103 374-477 27-147 (152)
86 cd02965 HyaE HyaE family; HyaE 99.6 6.2E-15 1.3E-19 113.6 7.7 96 377-475 12-109 (111)
87 cd02949 TRX_NTR TRX domain, no 99.6 2.8E-14 6E-19 110.6 11.0 87 46-138 11-97 (97)
88 cd02984 TRX_PICOT TRX domain, 99.6 1.9E-14 4.2E-19 111.9 10.2 93 38-137 2-96 (97)
89 KOG0907 Thioredoxin [Posttrans 99.6 1.1E-14 2.3E-19 112.6 8.5 86 391-480 19-104 (106)
90 cd02989 Phd_like_TxnDC9 Phosdu 99.6 1.3E-14 2.8E-19 115.2 9.1 100 375-478 4-112 (113)
91 cd02992 PDI_a_QSOX PDIa family 99.6 1.5E-14 3.3E-19 115.2 9.3 101 376-476 2-110 (114)
92 TIGR01130 ER_PDI_fam protein d 99.6 2.9E-12 6.4E-17 129.9 28.1 308 145-487 3-332 (462)
93 PLN00410 U5 snRNP protein, DIM 99.6 3.3E-14 7.2E-19 115.0 10.5 100 37-141 10-120 (142)
94 PTZ00102 disulphide isomerase; 99.6 6.9E-12 1.5E-16 127.5 30.0 293 145-486 34-342 (477)
95 cd02949 TRX_NTR TRX domain, no 99.6 1.8E-14 3.9E-19 111.7 8.5 93 385-479 5-97 (97)
96 KOG0907 Thioredoxin [Posttrans 99.5 3.5E-14 7.7E-19 109.7 9.7 86 46-139 19-104 (106)
97 PTZ00051 thioredoxin; Provisio 99.5 3.4E-14 7.4E-19 110.7 9.5 89 37-133 7-95 (98)
98 PLN00410 U5 snRNP protein, DIM 99.5 2.1E-14 4.6E-19 116.2 8.1 102 381-484 10-122 (142)
99 cd02950 TxlA TRX-like protein 99.5 6.1E-14 1.3E-18 116.2 10.6 101 382-485 10-113 (142)
100 PLN02309 5'-adenylylsulfate re 99.5 5.9E-14 1.3E-18 136.4 10.8 108 373-481 343-456 (457)
101 cd02984 TRX_PICOT TRX domain, 99.5 5.5E-14 1.2E-18 109.3 8.4 94 382-478 2-96 (97)
102 cd02951 SoxW SoxW family; SoxW 99.5 8.3E-14 1.8E-18 113.7 9.8 101 39-142 4-120 (125)
103 cd02947 TRX_family TRX family; 99.5 1.7E-13 3.7E-18 105.5 10.8 93 39-138 1-93 (93)
104 cd02953 DsbDgamma DsbD gamma f 99.5 3.2E-14 7E-19 112.0 6.6 94 383-479 2-104 (104)
105 TIGR00424 APS_reduc 5'-adenyly 99.5 9E-14 2E-18 135.1 10.7 107 373-480 349-461 (463)
106 cd02987 Phd_like_Phd Phosducin 99.5 1.8E-13 4E-18 117.1 10.7 128 349-481 37-174 (175)
107 TIGR01295 PedC_BrcD bacterioci 99.5 2.1E-13 4.5E-18 109.5 10.2 98 377-479 8-121 (122)
108 cd02987 Phd_like_Phd Phosducin 99.5 5.2E-13 1.1E-17 114.3 11.5 101 31-139 62-173 (175)
109 TIGR01295 PedC_BrcD bacterioci 99.5 4.3E-13 9.4E-18 107.6 10.1 101 32-138 7-121 (122)
110 cd02975 PfPDO_like_N Pyrococcu 99.4 2.4E-13 5.1E-18 108.0 7.8 90 391-483 20-111 (113)
111 PTZ00051 thioredoxin; Provisio 99.4 3.1E-13 6.8E-18 105.2 8.3 93 378-475 3-96 (98)
112 cd02986 DLP Dim1 family, Dim1- 99.4 4.9E-13 1.1E-17 102.8 9.1 77 40-122 4-82 (114)
113 cd02986 DLP Dim1 family, Dim1- 99.4 2.7E-13 5.9E-18 104.2 7.7 97 383-481 3-110 (114)
114 KOG0908 Thioredoxin-like prote 99.4 4E-13 8.8E-18 114.9 9.3 99 37-143 8-108 (288)
115 cd02975 PfPDO_like_N Pyrococcu 99.4 5.1E-13 1.1E-17 106.1 9.3 95 41-141 15-110 (113)
116 cd02983 P5_C P5 family, C-term 99.4 3.9E-12 8.5E-17 103.0 12.3 115 245-363 2-122 (130)
117 cd02947 TRX_family TRX family; 99.4 1.5E-12 3.3E-17 100.1 9.3 92 384-479 2-93 (93)
118 KOG4277 Uncharacterized conser 99.4 3.5E-13 7.6E-18 118.1 6.0 93 391-484 41-134 (468)
119 cd02988 Phd_like_VIAF Phosduci 99.4 1.6E-12 3.6E-17 112.7 9.7 122 351-480 60-190 (192)
120 cd03072 PDI_b'_ERp44 PDIb' fam 99.4 3.2E-12 6.9E-17 100.7 9.9 105 247-359 1-111 (111)
121 KOG0190 Protein disulfide isom 99.4 2.6E-10 5.7E-15 110.3 24.2 306 145-485 27-349 (493)
122 cd02951 SoxW SoxW family; SoxW 99.4 1.8E-12 3.9E-17 105.7 7.8 97 385-484 6-121 (125)
123 cd02982 PDI_b'_family Protein 99.4 4.5E-12 9.7E-17 99.7 9.8 89 47-140 11-102 (103)
124 PRK03147 thiol-disulfide oxido 99.3 2.9E-11 6.2E-16 105.0 15.1 107 32-140 45-171 (173)
125 PRK14018 trifunctional thiored 99.3 1.8E-11 3.8E-16 120.9 14.6 93 45-139 53-171 (521)
126 KOG0908 Thioredoxin-like prote 99.3 8.7E-12 1.9E-16 106.9 9.4 103 381-487 8-111 (288)
127 PTZ00062 glutaredoxin; Provisi 99.3 1.5E-11 3.3E-16 106.7 11.1 113 37-166 5-118 (204)
128 KOG0912 Thiol-disulfide isomer 99.3 2.7E-12 5.9E-17 113.0 6.2 105 381-486 2-110 (375)
129 PF13848 Thioredoxin_6: Thiore 99.3 1.3E-10 2.9E-15 101.9 16.8 171 283-480 6-184 (184)
130 cd02988 Phd_like_VIAF Phosduci 99.3 2.2E-11 4.7E-16 105.7 11.0 98 31-138 82-189 (192)
131 cd02952 TRP14_like Human TRX-r 99.3 9.2E-12 2E-16 98.2 7.6 78 37-117 8-100 (119)
132 PTZ00062 glutaredoxin; Provisi 99.3 2.1E-11 4.6E-16 105.9 10.2 93 381-485 5-97 (204)
133 TIGR00411 redox_disulf_1 small 99.3 3E-11 6.5E-16 90.5 9.8 80 51-140 2-81 (82)
134 TIGR02738 TrbB type-F conjugat 99.3 9.8E-11 2.1E-15 97.5 13.5 95 43-140 45-152 (153)
135 cd02959 ERp19 Endoplasmic reti 99.3 5.6E-12 1.2E-16 100.6 5.6 97 40-140 11-112 (117)
136 cd02982 PDI_b'_family Protein 99.3 1.2E-11 2.7E-16 97.1 6.9 87 393-481 12-102 (103)
137 cd02952 TRP14_like Human TRX-r 99.2 3.7E-11 7.9E-16 94.9 8.9 95 381-478 8-118 (119)
138 PF13098 Thioredoxin_2: Thiore 99.2 2.9E-11 6.2E-16 96.7 8.2 89 46-137 3-112 (112)
139 TIGR00411 redox_disulf_1 small 99.2 3.8E-11 8.2E-16 90.0 7.8 80 396-481 2-81 (82)
140 PRK15412 thiol:disulfide inter 99.2 2.3E-10 5E-15 99.9 13.5 91 46-142 66-177 (185)
141 cd02955 SSP411 TRX domain, SSP 99.2 6.6E-11 1.4E-15 94.6 8.7 99 36-139 3-117 (124)
142 cd03009 TryX_like_TryX_NRX Try 99.2 1.9E-10 4.1E-15 94.7 10.3 87 36-122 6-114 (131)
143 PRK00293 dipZ thiol:disulfide 99.2 3.4E-10 7.3E-15 115.6 13.5 100 37-140 459-569 (571)
144 COG2143 Thioredoxin-related pr 99.2 6E-10 1.3E-14 88.4 11.5 149 1-158 1-166 (182)
145 cd02959 ERp19 Endoplasmic reti 99.2 7.4E-11 1.6E-15 94.1 6.6 91 390-482 16-113 (117)
146 cd03073 PDI_b'_ERp72_ERp57 PDI 99.1 3.4E-10 7.3E-15 88.9 9.8 96 258-356 7-111 (111)
147 TIGR00385 dsbE periplasmic pro 99.1 1.1E-09 2.5E-14 94.5 13.5 90 46-141 61-171 (173)
148 PRK13728 conjugal transfer pro 99.1 7.8E-10 1.7E-14 93.5 11.6 87 52-143 73-173 (181)
149 cd03066 PDI_b_Calsequestrin_mi 99.1 8.5E-10 1.8E-14 85.9 9.6 97 145-243 2-101 (102)
150 cd03011 TlpA_like_ScsD_MtbDsbE 99.1 9.7E-10 2.1E-14 89.4 10.0 97 34-136 6-121 (123)
151 cd02958 UAS UAS family; UAS is 99.1 1.5E-09 3.3E-14 86.7 10.7 98 41-141 10-111 (114)
152 PF13905 Thioredoxin_8: Thiore 99.1 1.3E-09 2.9E-14 84.0 9.9 71 48-119 1-94 (95)
153 cd03010 TlpA_like_DsbE TlpA-li 99.1 1.1E-09 2.5E-14 89.5 10.0 90 39-133 16-126 (127)
154 cd03069 PDI_b_ERp57 PDIb famil 99.1 9E-10 2E-14 86.0 8.9 95 145-242 2-103 (104)
155 TIGR00412 redox_disulf_2 small 99.1 9.7E-10 2.1E-14 80.3 8.2 73 52-137 2-75 (76)
156 PHA02125 thioredoxin-like prot 99.0 1.2E-09 2.6E-14 79.7 8.6 70 52-136 2-72 (75)
157 cd02981 PDI_b_family Protein D 99.0 1.6E-09 3.5E-14 83.9 9.1 95 146-242 2-97 (97)
158 cd02964 TryX_like_family Trypa 99.0 1.8E-09 4E-14 88.8 9.9 76 46-121 15-113 (132)
159 cd02966 TlpA_like_family TlpA- 99.0 1.8E-09 3.9E-14 86.6 9.5 88 37-126 8-116 (116)
160 TIGR02740 TraF-like TraF-like 99.0 1.8E-09 3.9E-14 99.3 10.3 91 47-142 165-265 (271)
161 cd03008 TryX_like_RdCVF Trypar 99.0 2.5E-09 5.5E-14 87.9 9.8 76 47-122 24-127 (146)
162 TIGR00412 redox_disulf_2 small 99.0 9.2E-10 2E-14 80.4 6.2 74 397-479 2-76 (76)
163 KOG1731 FAD-dependent sulfhydr 99.0 3.5E-10 7.5E-15 109.0 4.4 109 374-482 38-153 (606)
164 PRK14018 trifunctional thiored 99.0 3.6E-09 7.9E-14 104.7 11.5 90 390-480 53-171 (521)
165 PF13098 Thioredoxin_2: Thiore 99.0 5.3E-10 1.1E-14 89.3 4.0 86 391-478 3-112 (112)
166 PRK11509 hydrogenase-1 operon 98.9 4.2E-09 9E-14 84.0 8.7 110 377-488 19-130 (132)
167 PRK00293 dipZ thiol:disulfide 98.9 1.8E-09 3.9E-14 110.2 8.2 98 381-481 459-569 (571)
168 TIGR03143 AhpF_homolog putativ 98.9 2.5E-08 5.5E-13 102.6 16.3 185 267-478 365-554 (555)
169 TIGR01626 ytfJ_HI0045 conserve 98.9 1.4E-08 3E-13 86.6 12.0 95 36-136 47-175 (184)
170 PRK11509 hydrogenase-1 operon 98.9 1.2E-08 2.7E-13 81.3 10.8 105 35-144 21-127 (132)
171 PHA02125 thioredoxin-like prot 98.9 2.1E-09 4.6E-14 78.4 6.1 71 397-478 2-73 (75)
172 KOG0913 Thiol-disulfide isomer 98.9 4.6E-10 1E-14 95.8 2.3 111 23-141 16-126 (248)
173 PLN02399 phospholipid hydroper 98.9 1.7E-08 3.7E-13 90.1 12.3 106 34-141 85-234 (236)
174 TIGR02738 TrbB type-F conjugat 98.9 8.2E-09 1.8E-13 86.0 9.3 85 393-481 50-152 (153)
175 cd02955 SSP411 TRX domain, SSP 98.9 9.4E-09 2E-13 82.3 9.2 72 390-463 12-94 (124)
176 TIGR02740 TraF-like TraF-like 98.9 5.8E-09 1.3E-13 96.0 8.7 88 392-483 165-265 (271)
177 cd03068 PDI_b_ERp72 PDIb famil 98.9 9.1E-09 2E-13 80.4 8.5 97 144-242 1-107 (107)
178 smart00594 UAS UAS domain. 98.9 8.6E-09 1.9E-13 83.2 8.6 94 41-137 20-121 (122)
179 TIGR00385 dsbE periplasmic pro 98.9 1.2E-08 2.6E-13 88.1 10.0 88 391-483 61-172 (173)
180 PRK15412 thiol:disulfide inter 98.9 8.6E-09 1.9E-13 90.0 8.4 89 392-485 67-179 (185)
181 PRK03147 thiol-disulfide oxido 98.9 2E-08 4.3E-13 87.1 10.6 102 377-480 46-170 (173)
182 cd03012 TlpA_like_DipZ_like Tl 98.8 2.1E-08 4.5E-13 81.8 9.8 79 47-127 22-125 (126)
183 cd02973 TRX_GRX_like Thioredox 98.8 8.7E-09 1.9E-13 73.6 6.6 57 51-113 2-58 (67)
184 cd02964 TryX_like_family Trypa 98.8 6.6E-09 1.4E-13 85.5 6.3 76 392-467 16-117 (132)
185 cd03008 TryX_like_RdCVF Trypar 98.8 7E-09 1.5E-13 85.3 6.3 76 392-467 24-130 (146)
186 PLN02919 haloacid dehalogenase 98.8 3.2E-08 7E-13 108.2 13.1 94 47-142 419-537 (1057)
187 COG4232 Thiol:disulfide interc 98.8 1.5E-08 3.3E-13 99.2 9.4 105 34-140 457-567 (569)
188 cd02960 AGR Anterior Gradient 98.8 9.3E-09 2E-13 82.0 6.6 84 39-128 14-100 (130)
189 cd02967 mauD Methylamine utili 98.8 2.5E-08 5.5E-13 79.8 9.2 71 47-120 20-108 (114)
190 cd03009 TryX_like_TryX_NRX Try 98.8 1.2E-08 2.6E-13 83.9 6.7 74 392-465 17-115 (131)
191 PTZ00056 glutathione peroxidas 98.8 5.5E-08 1.2E-12 85.5 11.3 107 34-142 25-179 (199)
192 cd03026 AhpF_NTD_C TRX-GRX-lik 98.8 4.5E-08 9.8E-13 73.6 9.1 77 47-134 11-87 (89)
193 cd03010 TlpA_like_DsbE TlpA-li 98.8 2.6E-08 5.7E-13 81.4 8.5 79 392-474 24-126 (127)
194 cd03011 TlpA_like_ScsD_MtbDsbE 98.8 3.5E-08 7.5E-13 80.2 8.9 92 380-476 8-120 (123)
195 PF01216 Calsequestrin: Calseq 98.8 8E-06 1.7E-10 74.5 24.4 310 145-489 36-375 (383)
196 PF13905 Thioredoxin_8: Thiore 98.8 1.6E-08 3.5E-13 78.0 6.2 69 393-461 1-94 (95)
197 cd02973 TRX_GRX_like Thioredox 98.8 1.2E-08 2.7E-13 72.8 5.0 56 397-455 3-58 (67)
198 PF08534 Redoxin: Redoxin; In 98.7 1E-07 2.2E-12 80.0 11.1 92 36-129 16-136 (146)
199 TIGR02661 MauD methylamine deh 98.7 2.5E-07 5.5E-12 80.9 13.4 102 34-140 58-178 (189)
200 PF13899 Thioredoxin_7: Thiore 98.7 4.2E-08 9E-13 73.1 7.0 70 41-116 10-82 (82)
201 cd02966 TlpA_like_family TlpA- 98.7 6.3E-08 1.4E-12 77.5 8.5 74 393-467 19-116 (116)
202 KOG0914 Thioredoxin-like prote 98.7 3.7E-08 8E-13 83.0 6.9 90 30-124 123-221 (265)
203 cd02960 AGR Anterior Gradient 98.7 9E-08 2E-12 76.4 8.5 88 390-480 20-121 (130)
204 cd00340 GSH_Peroxidase Glutath 98.7 1.7E-07 3.7E-12 79.1 10.3 96 37-135 11-150 (152)
205 cd03026 AhpF_NTD_C TRX-GRX-lik 98.7 6.3E-08 1.4E-12 72.8 6.2 76 393-475 12-87 (89)
206 PLN02412 probable glutathione 98.7 2.9E-07 6.3E-12 78.8 11.2 105 36-142 17-165 (167)
207 PRK13728 conjugal transfer pro 98.6 1.7E-07 3.8E-12 79.4 9.4 84 397-484 73-173 (181)
208 COG4232 Thiol:disulfide interc 98.6 3.6E-08 7.8E-13 96.6 5.8 104 378-482 457-568 (569)
209 cd02958 UAS UAS family; UAS is 98.6 9.3E-08 2E-12 76.3 7.2 92 390-483 14-112 (114)
210 PLN02919 haloacid dehalogenase 98.6 3.1E-07 6.6E-12 100.6 13.1 91 392-483 419-537 (1057)
211 TIGR02540 gpx7 putative glutat 98.6 6.6E-07 1.4E-11 75.6 11.8 103 36-140 10-152 (153)
212 KOG0913 Thiol-disulfide isomer 98.6 2.7E-08 5.8E-13 85.2 2.7 103 376-483 25-127 (248)
213 KOG2501 Thioredoxin, nucleored 98.5 2.6E-07 5.7E-12 75.1 7.1 77 46-122 31-130 (157)
214 KOG0914 Thioredoxin-like prote 98.5 1.7E-07 3.7E-12 79.0 5.5 92 373-465 122-221 (265)
215 cd02969 PRX_like1 Peroxiredoxi 98.5 1.8E-06 4E-11 74.5 11.9 96 47-144 24-155 (171)
216 PTZ00256 glutathione peroxidas 98.4 3.3E-06 7.2E-11 73.5 12.3 106 34-141 26-181 (183)
217 cd03012 TlpA_like_DipZ_like Tl 98.4 7.6E-07 1.7E-11 72.5 7.7 75 392-467 22-124 (126)
218 PLN02399 phospholipid hydroper 98.4 2.4E-06 5.3E-11 76.4 11.0 91 392-483 98-235 (236)
219 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 2.3E-06 4.9E-11 69.6 9.9 73 47-121 24-122 (124)
220 cd02967 mauD Methylamine utili 98.4 8E-07 1.7E-11 71.0 7.0 68 392-461 20-107 (114)
221 TIGR02661 MauD methylamine deh 98.4 1.7E-06 3.6E-11 75.8 9.4 87 392-481 73-178 (189)
222 PF13899 Thioredoxin_7: Thiore 98.4 1.2E-07 2.7E-12 70.5 1.8 65 390-457 14-81 (82)
223 cd02991 UAS_ETEA UAS family, E 98.4 2.9E-06 6.2E-11 67.2 9.5 95 41-141 10-113 (116)
224 smart00594 UAS UAS domain. 98.4 9.9E-07 2.2E-11 71.1 7.0 96 381-478 15-121 (122)
225 cd03017 PRX_BCP Peroxiredoxin 98.4 2.1E-06 4.6E-11 71.5 9.1 88 47-136 22-138 (140)
226 PRK15317 alkyl hydroperoxide r 98.3 1.9E-05 4.1E-10 80.9 16.8 177 267-483 18-199 (517)
227 TIGR03143 AhpF_homolog putativ 98.3 3.1E-05 6.8E-10 79.9 18.0 186 47-352 365-554 (555)
228 cd03074 PDI_b'_Calsequestrin_C 98.3 8.6E-06 1.9E-10 60.6 9.3 106 245-356 1-120 (120)
229 PF02114 Phosducin: Phosducin; 98.3 6E-06 1.3E-10 75.3 10.5 105 374-482 124-238 (265)
230 PF07912 ERp29_N: ERp29, N-ter 98.3 1.9E-05 4.2E-10 60.9 11.2 108 33-142 6-120 (126)
231 cd02969 PRX_like1 Peroxiredoxi 98.3 5.7E-06 1.2E-10 71.4 9.6 94 392-486 24-156 (171)
232 PLN02412 probable glutathione 98.3 6.5E-06 1.4E-10 70.5 9.6 92 392-484 28-166 (167)
233 PTZ00056 glutathione peroxidas 98.2 2.2E-06 4.7E-11 75.5 6.5 93 392-485 38-181 (199)
234 PF08534 Redoxin: Redoxin; In 98.2 2.5E-06 5.4E-11 71.6 6.6 78 392-470 27-136 (146)
235 cd03015 PRX_Typ2cys Peroxiredo 98.2 1.3E-05 2.9E-10 69.2 11.3 92 47-140 28-156 (173)
236 PF13728 TraF: F plasmid trans 98.2 9.1E-06 2E-10 72.1 10.0 86 47-137 119-214 (215)
237 TIGR01626 ytfJ_HI0045 conserve 98.2 6.2E-06 1.3E-10 70.5 7.6 81 393-478 59-176 (184)
238 cd02970 PRX_like2 Peroxiredoxi 98.1 1.5E-05 3.1E-10 67.1 9.4 47 47-95 23-69 (149)
239 TIGR03140 AhpF alkyl hydropero 98.1 9.9E-05 2.1E-09 75.6 17.1 181 267-484 18-201 (515)
240 cd01659 TRX_superfamily Thiore 98.1 9.3E-06 2E-10 57.1 6.9 60 52-117 1-63 (69)
241 COG0526 TrxA Thiol-disulfide i 98.1 1.4E-05 3E-10 64.1 8.8 73 48-126 32-107 (127)
242 PRK09437 bcp thioredoxin-depen 98.1 2.1E-05 4.5E-10 66.6 10.1 97 34-132 16-144 (154)
243 cd03070 PDI_b_ERp44 PDIb famil 98.1 2.4E-05 5.3E-10 58.0 9.0 83 145-231 1-85 (91)
244 TIGR03137 AhpC peroxiredoxin. 98.1 2E-05 4.3E-10 68.8 9.7 91 47-139 30-154 (187)
245 PF13192 Thioredoxin_3: Thiore 98.1 2.7E-05 5.8E-10 56.8 8.6 72 54-138 4-76 (76)
246 PTZ00256 glutathione peroxidas 98.1 4.4E-05 9.6E-10 66.5 11.4 90 393-483 40-182 (183)
247 cd00340 GSH_Peroxidase Glutath 98.1 1.3E-05 2.9E-10 67.5 7.9 83 393-477 22-151 (152)
248 TIGR02196 GlrX_YruB Glutaredox 98.1 1.9E-05 4.2E-10 57.3 7.7 71 52-138 2-74 (74)
249 PRK00522 tpx lipid hydroperoxi 98.1 4.6E-05 9.9E-10 65.3 11.0 87 47-137 43-165 (167)
250 KOG2603 Oligosaccharyltransfer 98.0 7.5E-05 1.6E-09 67.3 11.5 114 28-143 37-168 (331)
251 cd02968 SCO SCO (an acronym fo 98.0 3.2E-05 6.9E-10 64.5 8.8 46 47-92 21-68 (142)
252 PF02114 Phosducin: Phosducin; 98.0 3E-05 6.5E-10 70.8 9.2 101 32-140 126-237 (265)
253 TIGR02196 GlrX_YruB Glutaredox 98.0 1E-05 2.2E-10 58.7 5.1 69 397-479 2-74 (74)
254 COG0526 TrxA Thiol-disulfide i 98.0 1.6E-05 3.5E-10 63.7 6.4 84 393-478 32-120 (127)
255 PF13728 TraF: F plasmid trans 98.0 2.5E-05 5.4E-10 69.3 8.0 81 393-477 120-213 (215)
256 TIGR02540 gpx7 putative glutat 98.0 6.2E-05 1.3E-09 63.5 10.0 89 392-481 21-152 (153)
257 KOG2501 Thioredoxin, nucleored 98.0 7.4E-06 1.6E-10 66.8 4.0 76 392-467 32-133 (157)
258 TIGR02739 TraF type-F conjugat 98.0 5.9E-05 1.3E-09 68.1 10.2 91 47-142 149-249 (256)
259 TIGR02200 GlrX_actino Glutared 98.0 1.8E-05 4E-10 58.0 5.8 70 397-479 2-76 (77)
260 cd01659 TRX_superfamily Thiore 97.9 2.3E-05 5E-10 55.0 5.9 60 397-459 1-63 (69)
261 KOG1672 ATP binding protein [P 97.9 3.2E-05 6.9E-10 64.6 7.2 89 375-467 66-155 (211)
262 cd03014 PRX_Atyp2cys Peroxired 97.9 7.2E-05 1.6E-09 62.4 9.6 76 47-126 25-128 (143)
263 COG2143 Thioredoxin-related pr 97.9 8.6E-05 1.9E-09 59.6 9.2 90 391-482 40-149 (182)
264 cd03018 PRX_AhpE_like Peroxire 97.9 8.8E-05 1.9E-09 62.4 10.1 77 49-127 29-133 (149)
265 PRK13190 putative peroxiredoxi 97.9 0.00015 3.2E-09 64.1 11.7 93 47-141 26-154 (202)
266 cd02971 PRX_family Peroxiredox 97.9 6.6E-05 1.4E-09 62.3 9.0 80 47-128 21-130 (140)
267 cd03072 PDI_b'_ERp44 PDIb' fam 97.9 0.00011 2.5E-09 57.8 9.7 103 33-142 1-109 (111)
268 PRK10382 alkyl hydroperoxide r 97.9 0.00013 2.8E-09 63.4 10.8 92 47-140 30-155 (187)
269 PRK10606 btuE putative glutath 97.9 0.00032 7E-09 60.5 13.0 96 34-142 11-116 (183)
270 cd02981 PDI_b_family Protein D 97.9 8.7E-05 1.9E-09 57.2 8.7 89 39-139 8-96 (97)
271 PRK15000 peroxidase; Provision 97.9 0.00011 2.3E-09 64.8 10.1 91 47-139 33-160 (200)
272 KOG2603 Oligosaccharyltransfer 97.9 5.1E-05 1.1E-09 68.4 7.6 111 374-484 39-168 (331)
273 TIGR02200 GlrX_actino Glutared 97.8 8.3E-05 1.8E-09 54.4 7.5 69 52-137 2-75 (77)
274 cd03067 PDI_b_PDIR_N PDIb fami 97.8 0.00011 2.3E-09 54.3 7.6 98 37-139 8-110 (112)
275 PF13192 Thioredoxin_3: Thiore 97.8 4E-05 8.6E-10 55.9 5.5 72 399-479 4-76 (76)
276 KOG3425 Uncharacterized conser 97.8 0.00014 3E-09 55.6 8.3 81 383-467 13-111 (128)
277 PRK13703 conjugal pilus assemb 97.8 0.00014 3.1E-09 65.2 9.8 89 48-141 143-241 (248)
278 PF03190 Thioredox_DsbH: Prote 97.8 3.7E-05 8E-10 63.8 5.6 87 31-122 20-117 (163)
279 PF06110 DUF953: Eukaryotic pr 97.8 5.8E-05 1.2E-09 59.4 5.9 67 391-459 17-99 (119)
280 cd02983 P5_C P5 family, C-term 97.8 0.00054 1.2E-08 55.6 11.6 110 32-145 3-119 (130)
281 cd02991 UAS_ETEA UAS family, E 97.7 8.7E-05 1.9E-09 58.8 6.5 91 388-483 12-114 (116)
282 cd03073 PDI_b'_ERp72_ERp57 PDI 97.7 0.00032 6.9E-09 55.2 9.7 99 35-140 3-110 (111)
283 cd03017 PRX_BCP Peroxiredoxin 97.7 7E-05 1.5E-09 62.2 6.0 84 393-477 23-138 (140)
284 PF14595 Thioredoxin_9: Thiore 97.7 0.00013 2.8E-09 59.0 7.3 83 36-124 28-114 (129)
285 cd03071 PDI_b'_NRX PDIb' famil 97.7 0.00035 7.5E-09 52.2 8.5 89 266-356 13-115 (116)
286 PRK11200 grxA glutaredoxin 1; 97.7 0.00025 5.3E-09 53.1 8.2 78 51-141 2-83 (85)
287 TIGR02739 TraF type-F conjugat 97.7 0.00023 5E-09 64.3 9.1 90 393-484 150-250 (256)
288 PF00578 AhpC-TSA: AhpC/TSA fa 97.7 0.00012 2.6E-09 59.3 6.7 71 392-463 24-122 (124)
289 KOG1672 ATP binding protein [P 97.7 8.8E-05 1.9E-09 62.0 5.6 83 37-126 73-155 (211)
290 PRK13703 conjugal pilus assemb 97.7 0.00028 6.1E-09 63.3 9.3 90 393-484 143-243 (248)
291 cd03016 PRX_1cys Peroxiredoxin 97.7 0.00037 8.1E-09 61.7 10.0 90 49-140 26-153 (203)
292 PF07912 ERp29_N: ERp29, N-ter 97.7 0.00099 2.1E-08 51.7 10.7 106 376-484 5-121 (126)
293 PF14595 Thioredoxin_9: Thiore 97.6 0.00012 2.6E-09 59.2 5.1 84 380-466 28-115 (129)
294 TIGR02180 GRX_euk Glutaredoxin 97.6 0.00018 3.9E-09 53.7 5.6 57 52-113 1-60 (84)
295 PF06110 DUF953: Eukaryotic pr 97.5 0.00047 1E-08 54.3 8.0 69 46-117 17-99 (119)
296 PTZ00137 2-Cys peroxiredoxin; 97.5 0.00084 1.8E-08 61.1 10.8 92 47-140 97-224 (261)
297 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.00053 1.1E-08 50.7 7.3 95 258-354 10-110 (112)
298 KOG3425 Uncharacterized conser 97.5 0.00033 7.2E-09 53.6 6.4 74 40-116 14-104 (128)
299 PRK13189 peroxiredoxin; Provis 97.5 0.0011 2.4E-08 59.4 11.0 92 47-140 34-162 (222)
300 PRK10877 protein disulfide iso 97.5 0.00061 1.3E-08 61.5 9.2 85 47-140 106-230 (232)
301 PRK11200 grxA glutaredoxin 1; 97.5 0.00034 7.3E-09 52.3 6.2 77 396-483 2-84 (85)
302 TIGR03137 AhpC peroxiredoxin. 97.4 0.00058 1.3E-08 59.6 8.1 87 393-480 31-154 (187)
303 PRK13191 putative peroxiredoxi 97.4 0.0011 2.4E-08 59.1 9.8 92 47-140 32-160 (215)
304 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00015 3.2E-09 54.2 3.5 54 397-454 1-59 (84)
305 cd03015 PRX_Typ2cys Peroxiredo 97.4 0.00078 1.7E-08 58.1 8.5 89 393-482 29-157 (173)
306 cd02970 PRX_like2 Peroxiredoxi 97.4 0.00053 1.1E-08 57.5 6.6 45 393-438 24-68 (149)
307 PRK13599 putative peroxiredoxi 97.3 0.0016 3.4E-08 58.0 9.7 92 47-140 27-155 (215)
308 PRK09437 bcp thioredoxin-depen 97.3 0.0011 2.4E-08 56.0 7.9 87 392-479 29-153 (154)
309 PTZ00253 tryparedoxin peroxida 97.3 0.0022 4.7E-08 56.7 9.9 92 47-140 35-163 (199)
310 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0014 3E-08 57.9 8.1 81 47-137 76-197 (197)
311 PRK00522 tpx lipid hydroperoxi 97.2 0.0021 4.5E-08 55.0 8.6 84 393-479 44-166 (167)
312 cd02976 NrdH NrdH-redoxin (Nrd 97.2 0.00051 1.1E-08 49.5 3.9 68 397-478 2-73 (73)
313 PRK10954 periplasmic protein d 97.1 0.0075 1.6E-07 53.6 11.8 40 48-90 37-79 (207)
314 PF07449 HyaE: Hydrogenase-1 e 97.1 0.0064 1.4E-07 46.8 9.5 96 33-132 11-106 (107)
315 KOG3414 Component of the U4/U6 97.1 0.0045 9.9E-08 47.9 8.5 73 40-117 13-87 (142)
316 cd03023 DsbA_Com1_like DsbA fa 97.1 0.0044 9.4E-08 52.2 9.6 31 47-77 4-34 (154)
317 TIGR02183 GRXA Glutaredoxin, G 97.1 0.0012 2.5E-08 49.4 5.3 76 397-483 2-83 (86)
318 cd02976 NrdH NrdH-redoxin (Nrd 97.1 0.003 6.5E-08 45.3 7.4 69 52-136 2-72 (73)
319 PRK15317 alkyl hydroperoxide r 97.1 0.0022 4.8E-08 65.8 8.9 97 36-143 103-200 (517)
320 PRK10382 alkyl hydroperoxide r 97.1 0.0031 6.7E-08 54.8 8.4 88 393-481 31-155 (187)
321 PF13462 Thioredoxin_4: Thiore 97.1 0.0068 1.5E-07 51.6 10.5 86 47-139 11-162 (162)
322 PF03190 Thioredox_DsbH: Prote 97.0 0.0011 2.3E-08 55.3 5.0 105 375-481 18-143 (163)
323 PF00462 Glutaredoxin: Glutare 97.0 0.0011 2.5E-08 45.6 4.5 53 52-113 1-55 (60)
324 PF11009 DUF2847: Protein of u 97.0 0.0041 8.8E-08 47.6 7.6 94 37-133 6-104 (105)
325 TIGR02183 GRXA Glutaredoxin, G 97.0 0.0017 3.6E-08 48.6 5.5 77 52-141 2-82 (86)
326 PRK10877 protein disulfide iso 97.0 0.0054 1.2E-07 55.4 9.4 82 391-481 105-230 (232)
327 cd03018 PRX_AhpE_like Peroxire 97.0 0.0032 7E-08 52.8 7.5 43 393-436 28-71 (149)
328 PF05768 DUF836: Glutaredoxin- 96.9 0.00081 1.8E-08 49.6 3.2 78 397-479 2-81 (81)
329 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0029 6.4E-08 52.6 6.8 41 393-436 26-67 (143)
330 cd03419 GRX_GRXh_1_2_like Glut 96.9 0.0022 4.7E-08 47.5 5.3 54 52-112 2-58 (82)
331 PRK13190 putative peroxiredoxi 96.9 0.0042 9.1E-08 54.9 7.9 89 393-482 27-154 (202)
332 PRK11657 dsbG disulfide isomer 96.9 0.011 2.3E-07 54.2 10.6 86 47-138 116-249 (251)
333 KOG3170 Conserved phosducin-li 96.8 0.012 2.5E-07 49.7 9.5 125 350-482 68-201 (240)
334 PRK15000 peroxidase; Provision 96.8 0.007 1.5E-07 53.3 8.5 89 392-481 33-161 (200)
335 cd02971 PRX_family Peroxiredox 96.8 0.004 8.7E-08 51.5 6.6 44 392-436 21-65 (140)
336 KOG3414 Component of the U4/U6 96.8 0.0092 2E-07 46.2 7.6 100 381-482 10-120 (142)
337 KOG0911 Glutaredoxin-related p 96.8 0.00065 1.4E-08 58.6 1.6 80 391-473 15-94 (227)
338 TIGR02190 GlrX-dom Glutaredoxi 96.6 0.01 2.2E-07 43.5 7.2 55 50-113 8-63 (79)
339 KOG3171 Conserved phosducin-li 96.6 0.0091 2E-07 50.9 7.4 103 375-481 138-250 (273)
340 KOG0911 Glutaredoxin-related p 96.6 0.0017 3.7E-08 56.1 3.2 80 44-130 13-92 (227)
341 PHA03050 glutaredoxin; Provisi 96.6 0.0064 1.4E-07 47.5 5.9 65 41-113 6-75 (108)
342 PRK11657 dsbG disulfide isomer 96.6 0.013 2.9E-07 53.5 8.9 84 392-479 116-249 (251)
343 TIGR03140 AhpF alkyl hydropero 96.5 0.011 2.5E-07 60.5 9.3 98 35-143 103-201 (515)
344 cd02968 SCO SCO (an acronym fo 96.5 0.0044 9.5E-08 51.4 5.1 46 392-437 21-69 (142)
345 PF00462 Glutaredoxin: Glutare 96.5 0.002 4.4E-08 44.4 2.5 51 397-455 1-55 (60)
346 cd03066 PDI_b_Calsequestrin_mi 96.5 0.027 5.9E-07 43.6 9.1 92 37-140 7-100 (102)
347 cd03069 PDI_b_ERp57 PDIb famil 96.5 0.019 4.1E-07 44.7 8.2 91 37-140 7-103 (104)
348 cd03019 DsbA_DsbA DsbA family, 96.5 0.018 3.8E-07 49.9 9.0 33 47-79 14-46 (178)
349 PF05768 DUF836: Glutaredoxin- 96.5 0.0076 1.6E-07 44.4 5.6 79 52-138 2-81 (81)
350 cd03020 DsbA_DsbC_DsbG DsbA fa 96.5 0.011 2.4E-07 52.2 7.7 77 392-478 76-197 (197)
351 PF02966 DIM1: Mitosis protein 96.4 0.038 8.2E-07 43.7 9.2 72 40-117 10-84 (133)
352 cd03016 PRX_1cys Peroxiredoxin 96.4 0.012 2.6E-07 52.1 7.3 87 395-482 28-154 (203)
353 PTZ00137 2-Cys peroxiredoxin; 96.4 0.016 3.4E-07 53.0 8.0 88 393-481 98-224 (261)
354 TIGR02194 GlrX_NrdH Glutaredox 96.3 0.0032 7E-08 45.2 2.7 66 398-476 2-70 (72)
355 cd03029 GRX_hybridPRX5 Glutare 96.3 0.035 7.6E-07 39.7 8.1 68 52-137 3-71 (72)
356 cd03419 GRX_GRXh_1_2_like Glut 96.3 0.0051 1.1E-07 45.4 3.6 51 397-453 2-57 (82)
357 PF02966 DIM1: Mitosis protein 96.2 0.024 5.1E-07 44.8 7.2 99 381-482 7-117 (133)
358 PRK10329 glutaredoxin-like pro 96.2 0.011 2.3E-07 43.5 5.0 73 397-483 3-78 (81)
359 TIGR02190 GlrX-dom Glutaredoxi 96.1 0.0054 1.2E-07 45.0 3.0 55 393-455 6-63 (79)
360 PRK10606 btuE putative glutath 96.1 0.01 2.2E-07 51.2 5.1 43 392-436 24-66 (183)
361 PRK13599 putative peroxiredoxi 96.1 0.029 6.2E-07 50.0 8.1 88 393-481 28-155 (215)
362 TIGR02189 GlrX-like_plant Glut 96.1 0.0093 2E-07 45.8 4.3 51 397-456 10-67 (99)
363 TIGR02194 GlrX_NrdH Glutaredox 96.0 0.018 3.9E-07 41.3 5.5 52 53-113 2-54 (72)
364 cd02066 GRX_family Glutaredoxi 96.0 0.016 3.5E-07 41.2 5.3 53 52-113 2-56 (72)
365 cd02972 DsbA_family DsbA famil 96.0 0.026 5.7E-07 42.9 6.8 61 52-115 1-91 (98)
366 PHA03050 glutaredoxin; Provisi 96.0 0.011 2.3E-07 46.3 4.4 54 397-456 15-75 (108)
367 cd03418 GRX_GRXb_1_3_like Glut 96.0 0.033 7.1E-07 40.2 6.8 53 52-113 2-57 (75)
368 TIGR02181 GRX_bact Glutaredoxi 96.0 0.013 2.9E-07 42.9 4.7 53 52-113 1-55 (79)
369 PRK10329 glutaredoxin-like pro 95.9 0.034 7.4E-07 40.9 6.6 73 52-140 3-76 (81)
370 cd02066 GRX_family Glutaredoxi 95.9 0.0088 1.9E-07 42.6 3.4 50 397-454 2-55 (72)
371 cd03027 GRX_DEP Glutaredoxin ( 95.9 0.038 8.2E-07 39.7 6.7 53 52-113 3-57 (73)
372 PRK13189 peroxiredoxin; Provis 95.9 0.032 7E-07 50.0 7.6 88 393-481 35-162 (222)
373 TIGR02189 GlrX-like_plant Glut 95.9 0.022 4.8E-07 43.7 5.6 60 43-113 3-67 (99)
374 PRK13191 putative peroxiredoxi 95.7 0.043 9.4E-07 48.9 7.7 88 393-481 33-160 (215)
375 PF00837 T4_deiodinase: Iodoth 95.7 0.17 3.7E-06 44.8 10.9 59 22-80 73-134 (237)
376 cd03027 GRX_DEP Glutaredoxin ( 95.6 0.013 2.8E-07 42.2 3.3 49 397-453 3-55 (73)
377 COG1999 Uncharacterized protei 95.6 0.41 8.9E-06 42.4 13.4 105 37-141 56-204 (207)
378 cd03418 GRX_GRXb_1_3_like Glut 95.6 0.011 2.4E-07 42.7 3.0 50 397-454 2-56 (75)
379 COG1225 Bcp Peroxiredoxin [Pos 95.5 0.26 5.6E-06 41.0 10.8 99 40-140 22-155 (157)
380 TIGR02181 GRX_bact Glutaredoxi 95.5 0.0089 1.9E-07 43.8 2.0 49 397-453 1-53 (79)
381 cd03029 GRX_hybridPRX5 Glutare 95.4 0.024 5.3E-07 40.6 4.2 66 397-478 3-71 (72)
382 cd03028 GRX_PICOT_like Glutare 95.4 0.048 1E-06 41.1 5.7 62 42-113 2-69 (90)
383 TIGR00365 monothiol glutaredox 95.3 0.074 1.6E-06 40.6 6.6 63 41-113 5-73 (97)
384 PTZ00253 tryparedoxin peroxida 95.3 0.068 1.5E-06 47.2 7.3 88 393-481 36-163 (199)
385 PF13743 Thioredoxin_5: Thiore 95.2 0.078 1.7E-06 45.7 7.3 27 54-80 2-28 (176)
386 PF07449 HyaE: Hydrogenase-1 e 95.0 0.02 4.3E-07 44.1 2.7 91 376-470 10-103 (107)
387 PF02630 SCO1-SenC: SCO1/SenC; 95.0 0.34 7.4E-06 41.6 10.7 61 33-93 37-98 (174)
388 COG0695 GrxC Glutaredoxin and 95.0 0.12 2.5E-06 37.9 6.7 53 52-113 3-59 (80)
389 KOG2640 Thioredoxin [Function 94.9 0.011 2.3E-07 53.9 1.2 96 40-143 66-164 (319)
390 TIGR00365 monothiol glutaredox 94.9 0.03 6.5E-07 42.8 3.4 54 393-454 11-72 (97)
391 PRK10638 glutaredoxin 3; Provi 94.8 0.064 1.4E-06 39.7 4.9 53 52-113 4-58 (83)
392 cd02972 DsbA_family DsbA famil 94.7 0.075 1.6E-06 40.3 5.4 59 397-457 1-91 (98)
393 COG0695 GrxC Glutaredoxin and 94.6 0.045 9.8E-07 40.1 3.6 51 397-455 3-59 (80)
394 cd03028 GRX_PICOT_like Glutare 94.5 0.044 9.5E-07 41.3 3.5 53 393-453 7-67 (90)
395 KOG1752 Glutaredoxin and relat 94.2 0.32 7E-06 37.4 7.6 64 41-113 7-73 (104)
396 PRK10638 glutaredoxin 3; Provi 93.8 0.066 1.4E-06 39.6 3.1 49 397-453 4-56 (83)
397 PF11009 DUF2847: Protein of u 93.7 0.091 2E-06 40.3 3.7 92 381-474 6-104 (105)
398 cd03068 PDI_b_ERp72 PDIb famil 93.5 0.7 1.5E-05 36.0 8.6 91 37-139 7-106 (107)
399 cd03023 DsbA_Com1_like DsbA fa 93.5 0.2 4.3E-06 41.9 6.0 32 392-423 4-35 (154)
400 KOG3171 Conserved phosducin-li 93.0 0.32 7E-06 41.8 6.3 102 32-141 139-251 (273)
401 PRK10824 glutaredoxin-4; Provi 92.8 0.27 6E-06 38.6 5.2 63 41-113 8-76 (115)
402 PRK10824 glutaredoxin-4; Provi 92.7 0.1 2.2E-06 41.0 2.8 55 393-455 14-76 (115)
403 cd02974 AhpF_NTD_N Alkyl hydro 92.1 2.4 5.3E-05 32.0 9.5 80 386-480 11-92 (94)
404 KOG2640 Thioredoxin [Function 91.9 0.075 1.6E-06 48.6 1.3 89 392-483 75-163 (319)
405 KOG3170 Conserved phosducin-li 91.7 1.1 2.3E-05 38.4 7.7 106 32-148 92-207 (240)
406 PRK12759 bifunctional gluaredo 91.7 0.33 7.1E-06 48.1 5.6 51 397-455 4-66 (410)
407 cd03074 PDI_b'_Calsequestrin_C 91.4 3.9 8.4E-05 31.2 9.5 103 379-481 5-119 (120)
408 PF13462 Thioredoxin_4: Thiore 91.1 0.76 1.6E-05 38.8 6.7 44 392-435 11-54 (162)
409 cd03019 DsbA_DsbA DsbA family, 90.5 0.56 1.2E-05 40.4 5.4 43 392-436 14-56 (178)
410 cd03013 PRX5_like Peroxiredoxi 90.5 0.93 2E-05 38.1 6.5 58 47-105 28-88 (155)
411 KOG2507 Ubiquitin regulatory p 90.5 2.3 4.9E-05 40.8 9.4 100 40-141 7-111 (506)
412 PRK12759 bifunctional gluaredo 88.6 0.98 2.1E-05 44.7 6.1 53 52-113 4-66 (410)
413 KOG1752 Glutaredoxin and relat 88.1 0.86 1.9E-05 35.1 4.1 54 396-455 15-73 (104)
414 COG3634 AhpF Alkyl hydroperoxi 86.7 16 0.00034 34.7 12.0 172 268-480 19-196 (520)
415 KOG2792 Putative cytochrome C 86.4 17 0.00037 32.8 11.6 105 37-142 128-276 (280)
416 cd02990 UAS_FAF1 UAS family, F 86.2 16 0.00034 29.8 10.6 94 45-141 18-133 (136)
417 PF01323 DSBA: DSBA-like thior 86.1 8 0.00017 33.6 9.9 28 51-78 1-28 (193)
418 COG1331 Highly conserved prote 86.1 1.2 2.6E-05 45.8 5.0 88 29-121 24-122 (667)
419 COG1651 DsbG Protein-disulfide 85.3 7.4 0.00016 35.4 9.6 36 99-140 207-242 (244)
420 cd02978 KaiB_like KaiB-like fa 84.7 5.9 0.00013 28.1 6.5 63 51-117 3-65 (72)
421 TIGR02654 circ_KaiB circadian 84.2 4.5 9.7E-05 29.8 5.9 75 49-129 3-77 (87)
422 PF00837 T4_deiodinase: Iodoth 83.5 4 8.7E-05 36.4 6.5 60 374-433 81-142 (237)
423 PRK10954 periplasmic protein d 83.4 1.7 3.8E-05 38.5 4.4 41 393-435 37-80 (207)
424 cd02977 ArsC_family Arsenate R 83.4 1.5 3.2E-05 34.0 3.5 77 398-482 2-87 (105)
425 COG3019 Predicted metal-bindin 83.3 6.4 0.00014 31.7 6.8 75 51-141 27-104 (149)
426 cd02974 AhpF_NTD_N Alkyl hydro 83.2 16 0.00035 27.6 8.9 75 47-139 18-92 (94)
427 PRK09301 circadian clock prote 82.4 5.5 0.00012 30.4 5.9 76 48-129 5-80 (103)
428 PF06053 DUF929: Domain of unk 82.4 9.2 0.0002 34.6 8.5 71 32-117 45-115 (249)
429 PHA03075 glutaredoxin-like pro 81.8 2.5 5.4E-05 32.7 4.0 36 394-435 2-37 (123)
430 cd03041 GST_N_2GST_N GST_N fam 81.3 7.3 0.00016 28.0 6.4 73 52-140 2-76 (77)
431 cd03031 GRX_GRX_like Glutaredo 81.1 1.8 3.9E-05 35.9 3.3 51 397-455 2-66 (147)
432 cd02977 ArsC_family Arsenate R 80.9 1.2 2.6E-05 34.5 2.2 78 53-139 2-85 (105)
433 cd02978 KaiB_like KaiB-like fa 79.3 5.3 0.00011 28.3 4.7 61 396-457 3-63 (72)
434 PF04592 SelP_N: Selenoprotein 77.5 5.5 0.00012 35.3 5.3 63 33-96 12-75 (238)
435 KOG2507 Ubiquitin regulatory p 77.3 15 0.00032 35.6 8.3 88 391-480 16-109 (506)
436 cd03036 ArsC_like Arsenate Red 76.7 3.5 7.6E-05 32.3 3.7 76 398-481 2-87 (111)
437 cd03040 GST_N_mPGES2 GST_N fam 76.4 11 0.00023 26.9 6.0 74 52-141 2-76 (77)
438 TIGR00762 DegV EDD domain prot 75.9 22 0.00048 33.1 9.4 153 97-268 13-169 (275)
439 TIGR01617 arsC_related transcr 75.6 8.1 0.00018 30.6 5.5 75 53-139 2-86 (117)
440 PRK01655 spxA transcriptional 75.2 4.2 9.1E-05 33.0 3.8 36 397-440 2-37 (131)
441 cd03060 GST_N_Omega_like GST_N 74.9 7.2 0.00016 27.4 4.6 53 53-113 2-54 (71)
442 cd03031 GRX_GRX_like Glutaredo 74.1 7.2 0.00016 32.3 5.0 53 52-113 2-66 (147)
443 COG1331 Highly conserved prote 73.9 7.8 0.00017 40.1 6.1 101 378-481 29-149 (667)
444 PF00255 GSHPx: Glutathione pe 73.3 17 0.00036 28.3 6.5 59 33-94 6-64 (108)
445 cd03035 ArsC_Yffb Arsenate Red 73.3 4.9 0.00011 31.1 3.6 36 398-441 2-37 (105)
446 cd03036 ArsC_like Arsenate Red 72.7 5 0.00011 31.4 3.6 78 53-139 2-86 (111)
447 PF13417 GST_N_3: Glutathione 72.3 23 0.00051 25.1 6.9 73 54-143 1-73 (75)
448 COG3634 AhpF Alkyl hydroperoxi 72.0 41 0.00089 32.1 9.7 109 47-174 115-223 (520)
449 KOG2792 Putative cytochrome C 71.7 28 0.00061 31.5 8.2 91 393-483 139-276 (280)
450 TIGR02742 TrbC_Ftype type-F co 71.7 9.2 0.0002 30.8 4.9 47 437-483 59-116 (130)
451 COG0386 BtuE Glutathione perox 71.1 59 0.0013 27.0 10.6 78 33-114 10-97 (162)
452 TIGR01617 arsC_related transcr 70.8 5.7 0.00012 31.5 3.6 77 398-482 2-88 (117)
453 PF06053 DUF929: Domain of unk 70.7 17 0.00036 33.1 6.8 70 376-458 45-114 (249)
454 PRK12559 transcriptional regul 69.9 7.4 0.00016 31.6 4.1 37 397-441 2-38 (131)
455 cd03040 GST_N_mPGES2 GST_N fam 69.5 15 0.00033 26.1 5.4 72 397-482 2-76 (77)
456 COG1999 Uncharacterized protei 69.4 81 0.0017 27.9 10.9 93 392-484 66-206 (207)
457 PHA03075 glutaredoxin-like pro 68.7 8.1 0.00018 29.9 3.7 36 49-91 2-37 (123)
458 cd03037 GST_N_GRX2 GST_N famil 68.5 16 0.00035 25.5 5.3 68 54-138 3-70 (71)
459 cd03032 ArsC_Spx Arsenate Redu 68.2 9.3 0.0002 30.1 4.3 77 397-481 2-86 (115)
460 cd03041 GST_N_2GST_N GST_N fam 67.6 19 0.00041 25.8 5.6 71 397-481 2-76 (77)
461 cd02990 UAS_FAF1 UAS family, F 67.1 56 0.0012 26.6 8.5 89 391-482 19-133 (136)
462 PF13743 Thioredoxin_5: Thiore 67.0 8.4 0.00018 33.1 4.1 35 399-435 2-36 (176)
463 PF02645 DegV: Uncharacterised 65.5 1E+02 0.0022 28.7 11.4 107 89-199 6-117 (280)
464 cd00570 GST_N_family Glutathio 65.3 12 0.00025 25.5 4.0 54 53-113 2-55 (71)
465 PF09673 TrbC_Ftype: Type-F co 63.8 9.8 0.00021 29.9 3.6 43 434-476 56-110 (113)
466 cd00570 GST_N_family Glutathio 63.3 17 0.00037 24.6 4.6 51 399-455 3-55 (71)
467 PRK13344 spxA transcriptional 62.7 13 0.00029 30.1 4.3 37 397-441 2-38 (132)
468 TIGR02654 circ_KaiB circadian 62.0 17 0.00037 26.8 4.2 74 395-470 4-77 (87)
469 PF13778 DUF4174: Domain of un 61.7 79 0.0017 25.0 9.6 98 41-140 3-111 (118)
470 cd03013 PRX5_like Peroxiredoxi 60.7 15 0.00034 30.7 4.5 43 393-436 30-74 (155)
471 cd03032 ArsC_Spx Arsenate Redu 60.5 6.6 0.00014 31.0 2.1 79 52-139 2-85 (115)
472 TIGR02742 TrbC_Ftype type-F co 59.9 16 0.00034 29.5 4.1 42 99-140 63-114 (130)
473 PRK09301 circadian clock prote 59.4 19 0.00042 27.5 4.2 82 393-476 5-87 (103)
474 COG0450 AhpC Peroxiredoxin [Po 59.4 1E+02 0.0022 26.8 9.0 93 49-141 34-161 (194)
475 COG4545 Glutaredoxin-related p 59.2 13 0.00029 26.3 3.0 22 398-419 5-26 (85)
476 PRK12559 transcriptional regul 59.1 9 0.00019 31.1 2.7 79 52-139 2-85 (131)
477 PF07689 KaiB: KaiB domain; I 55.6 12 0.00027 27.3 2.6 57 55-115 3-59 (82)
478 cd03051 GST_N_GTT2_like GST_N 54.8 23 0.0005 24.7 4.1 54 53-113 2-57 (74)
479 cd03059 GST_N_SspA GST_N famil 54.6 41 0.00089 23.4 5.3 70 53-139 2-71 (73)
480 COG3531 Predicted protein-disu 52.3 25 0.00054 30.4 4.2 43 98-141 165-209 (212)
481 cd03035 ArsC_Yffb Arsenate Red 51.2 14 0.00031 28.5 2.5 19 53-71 2-20 (105)
482 PF13778 DUF4174: Domain of un 50.0 1.1E+02 0.0025 24.1 7.6 84 270-354 12-110 (118)
483 PRK00366 ispG 4-hydroxy-3-meth 49.8 17 0.00036 34.7 3.1 80 60-140 271-356 (360)
484 PF09673 TrbC_Ftype: Type-F co 49.2 47 0.001 26.0 5.2 45 65-116 36-80 (113)
485 PF04592 SelP_N: Selenoprotein 48.7 56 0.0012 29.2 6.0 58 377-436 12-71 (238)
486 COG3019 Predicted metal-bindin 47.2 64 0.0014 26.2 5.5 75 395-482 26-104 (149)
487 PRK01655 spxA transcriptional 47.1 21 0.00046 28.9 3.0 35 52-95 2-36 (131)
488 COG2761 FrnE Predicted dithiol 47.0 39 0.00084 30.1 4.8 42 443-488 178-219 (225)
489 cd03045 GST_N_Delta_Epsilon GS 46.2 29 0.00063 24.3 3.4 53 53-112 2-56 (74)
490 PF15284 PAGK: Phage-encoded v 42.7 23 0.00049 23.9 2.1 17 1-17 1-17 (61)
491 COG0278 Glutaredoxin-related p 42.3 55 0.0012 24.9 4.2 62 40-111 7-72 (105)
492 COG3411 Ferredoxin [Energy pro 42.2 50 0.0011 22.7 3.7 35 450-488 17-51 (64)
493 cd03033 ArsC_15kD Arsenate Red 42.1 31 0.00068 27.1 3.2 37 397-441 2-38 (113)
494 KOG1651 Glutathione peroxidase 41.4 74 0.0016 26.8 5.3 100 32-143 18-127 (171)
495 PF08806 Sep15_SelM: Sep15/Sel 41.3 39 0.00084 24.5 3.3 34 108-141 42-76 (78)
496 PF07172 GRP: Glycine rich pro 40.1 26 0.00056 26.5 2.3 12 1-12 1-12 (95)
497 PF02630 SCO1-SenC: SCO1/SenC; 39.1 98 0.0021 26.4 6.1 45 392-436 51-97 (174)
498 COG1651 DsbG Protein-disulfide 38.9 69 0.0015 29.0 5.5 46 394-440 85-130 (244)
499 cd03034 ArsC_ArsC Arsenate Red 38.3 44 0.00095 26.1 3.5 76 398-481 2-85 (112)
500 TIGR00014 arsC arsenate reduct 37.9 44 0.00096 26.2 3.5 76 398-481 2-86 (114)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-70 Score=520.90 Aligned_cols=459 Identities=49% Similarity=0.869 Sum_probs=410.6
Q ss_pred cccCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 28 ESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 28 ~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
...+.|+.|+..||+..+..+..++|.||||||+||+++.|.|+++|+.+++.++.+..+.|||+.+.. +|.+|+|++
T Consensus 22 ~~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~--~~~~y~v~g 99 (493)
T KOG0190|consen 22 KAEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESD--LASKYEVRG 99 (493)
T ss_pred CcccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhh--hHhhhcCCC
Confidence 346789999999999999999999999999999999999999999999999988899999999999977 999999999
Q ss_pred ccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHh
Q 010824 108 FPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKL 187 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~ 187 (500)
|||+.+|++|.. ...|.|.++.++|+.|+.+..+|.+..+.+.+++..++..++.++|++|.+..+.. ..|...|..+
T Consensus 100 yPTlkiFrnG~~-~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~-~~~~~~a~~l 177 (493)
T KOG0190|consen 100 YPTLKIFRNGRS-AQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLA-ESFFDAASKL 177 (493)
T ss_pred CCeEEEEecCCc-ceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccch-HHHHHHHHhc
Confidence 999999999843 78999999999999999999999999999999999999999999999999887777 9999999999
Q ss_pred cCCceEEEeecccccCCCCCCCCCC---eEEEeccCCCcc-cccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhh
Q 010824 188 RSDYEFGHTQNAKLLPRGESSVTGP---VVRLFKPFDELF-VDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKF 263 (500)
Q Consensus 188 ~~~~~f~~~~~~~~~~~~~~~~~~p---~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~ 263 (500)
++++.|+++.+.+++++ +..+.+ .+++++..|+.. .|.|+++.+.|..||..+++|++..+|. .+...+
T Consensus 178 ~~d~~F~~ts~~~~~~~--~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~-----~~~~~~ 250 (493)
T KOG0190|consen 178 RDDYKFAHTSDSDVAKK--LELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVTEFTV-----ANNAKI 250 (493)
T ss_pred cccceeeccCcHhHHhh--ccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccceecc-----ccccee
Confidence 99999999999999999 666544 488999988888 6789999999999999999999999999 577777
Q ss_pred hcCCCceEE-EEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCc-eEEEEeCCCCcc-CC
Q 010824 264 FNSPNAKAM-LFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVP-LIVIQTNDGQKY-LK 340 (500)
Q Consensus 264 ~~~~~~~~~-l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P-~i~i~~~~~~~y-~~ 340 (500)
+.+..+..+ ++.+..+...+.+++.++++|++|+++ ++|+++|...++..++.||+.....| .+++.+....+| +.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~-l~Fi~~d~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~ 329 (493)
T KOG0190|consen 251 YSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGK-LRFILIDPESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLE 329 (493)
T ss_pred eccccccceeEEeccccccHHHHHHHHHHHHHhcccc-eEEEEEChHHhhHHHHhcCcccccCCeeEEeeccccccccCc
Confidence 777655544 555556667899999999999999999 99999999999999999999977777 555555555888 66
Q ss_pred -CCCChhhHHHHHHHHhcCCCCCccccCCCCCCCC-CCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHH
Q 010824 341 -PNLDADQIAPWVKEYKEGKVPPFRKSEPIPEENN-EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEV 418 (500)
Q Consensus 341 -~~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~ 418 (500)
.+.+.++|+.|+.++++|+++|++||+++|+.+. ++|+.+.+++|++++.+.+|+|+|-||||||+||+.+.|.|+++
T Consensus 330 ~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeL 409 (493)
T KOG0190|consen 330 EEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEEL 409 (493)
T ss_pred cccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHH
Confidence 5599999999999999999999999999999665 88999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc--eEEecCCCCHHHHHHHHHhhcCCCCC--CCCCccc
Q 010824 419 AVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGDRTKEDIVDFIENNRDKAAP--KETVKEE 494 (500)
Q Consensus 419 ~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~g~~~~~~l~~~i~~~~~~~~~--~~~~~~~ 494 (500)
+..+++..++.+++||.+.|+.+.. .+.++|||++|+.|++ ++.|.|.++.+++..||.++...... .+.....
T Consensus 410 Ae~~~~~~~vviAKmDaTaNd~~~~--~~~~fPTI~~~pag~k~~pv~y~g~R~le~~~~fi~~~a~~~~~~~~ee~~~~ 487 (493)
T KOG0190|consen 410 AEKYKDDENVVIAKMDATANDVPSL--KVDGFPTILFFPAGHKSNPVIYNGDRTLEDLKKFIKKSATESATPKKEEKKDE 487 (493)
T ss_pred HHHhcCCCCcEEEEeccccccCccc--cccccceEEEecCCCCCCCcccCCCcchHHHHhhhccCCCccccccchhcccc
Confidence 9999988899999999999999984 6777999999999974 88999999999999999998862211 1111222
Q ss_pred cCCCCC
Q 010824 495 SGKDEL 500 (500)
Q Consensus 495 ~~~~e~ 500 (500)
+.+|||
T Consensus 488 ~~~dEL 493 (493)
T KOG0190|consen 488 SVKDEL 493 (493)
T ss_pred cccccC
Confidence 567776
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=3.2e-61 Score=487.98 Aligned_cols=442 Identities=34% Similarity=0.627 Sum_probs=391.2
Q ss_pred cccCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 28 ESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 28 ~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
...+.+..++.++|+.++++++.++|+||++||++|+++.|.|.++++.+++.++++.++.|||+.+.. +|++|+|.+
T Consensus 29 ~~~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~--l~~~~~i~~ 106 (477)
T PTZ00102 29 FISEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME--LAQEFGVRG 106 (477)
T ss_pred ccCCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH--HHHhcCCCc
Confidence 334678999999999999999999999999999999999999999999997766779999999999888 999999999
Q ss_pred ccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHh
Q 010824 108 FPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKL 187 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~ 187 (500)
+|++++|++|+ .. .|.|.++.+.|.+|+.+.++|++.++++.+++..+.....+.+++.+.+.+...++.|.++|..+
T Consensus 107 ~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~ 184 (477)
T PTZ00102 107 YPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKH 184 (477)
T ss_pred ccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhc
Confidence 99999999874 43 99999999999999999999999999999999888888888899999888899999999999999
Q ss_pred cCCceEEEeecccccCCCCCCCCCCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCC
Q 010824 188 RSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSP 267 (500)
Q Consensus 188 ~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 267 (500)
++.+.|+...+. +.+.+.+|+..+....+.+..+.++|..||+.+++|.+..++. .++..++..+
T Consensus 185 ~~~~~F~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~~~P~~~~~~~-----~~~~~~~~~~ 249 (477)
T PTZ00102 185 REHAKFFVKKHE----------GKNKIYVLHKDEEGVELFMGKTKEELEEFVSTESFPLFAEINA-----ENYRRYISSG 249 (477)
T ss_pred cccceEEEEcCC----------CCCcEEEEecCCCCcccCCCCCHHHHHHHHHHcCCCceeecCc-----cchHHHhcCC
Confidence 999999876543 2356888888766665545568899999999999999999999 7899999888
Q ss_pred CceEEEEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhh-HHhhcCCCCCCCceEEEEeCCCCcc-CCC----
Q 010824 268 NAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQG-AFQYFGLQESQVPLIVIQTNDGQKY-LKP---- 341 (500)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~-~~~~~gi~~~~~P~i~i~~~~~~~y-~~~---- 341 (500)
.++++++. ..++.+++.+.++++|++|+++ +.|+++|+..++. +++.+|+. ..|.+++.+.++ +| +.+
T Consensus 250 ~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~~-~~f~~vd~~~~~~~~~~~~gi~--~~P~~~i~~~~~-~y~~~~~~~~ 323 (477)
T PTZ00102 250 KDLVWFCG--TTEDYDKYKSVVRKVARKLREK-YAFVWLDTEQFGSHAKEHLLIE--EFPGLAYQSPAG-RYLLPPAKES 323 (477)
T ss_pred ccEEEEec--CHHHHHHHHHHHHHHHHhccCc-eEEEEEechhcchhHHHhcCcc--cCceEEEEcCCc-ccCCCccccc
Confidence 87665543 3445577899999999999999 9999999999887 88999998 689999988655 56 543
Q ss_pred CCChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHH
Q 010824 342 NLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVS 421 (500)
Q Consensus 342 ~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~ 421 (500)
.++.+.|.+|++++.+|+++++++|+++|+.+.+.+..+++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..
T Consensus 324 ~~~~~~l~~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~ 403 (477)
T PTZ00102 324 FDSVEALIEFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEK 403 (477)
T ss_pred cCCHHHHHHHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999999887888999999999999888899999999999999999999999999999
Q ss_pred cCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc-eEEecCCCCHHHHHHHHHhhcCCCCCCCCCccccCCCCC
Q 010824 422 YQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK-TVPYEGDRTKEDIVDFIENNRDKAAPKETVKEESGKDEL 500 (500)
Q Consensus 422 ~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~e~ 500 (500)
+++...+.++++|++.++.+++.++++++|++++|++|++ +.+|.|..+.+.|.+||++++.. +.++...|||
T Consensus 404 ~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~------~~~~~~~~~~ 477 (477)
T PTZ00102 404 YKDNDSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN------PFEDDTHEEL 477 (477)
T ss_pred hccCCcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC------CccccccccC
Confidence 8765579999999999999998899999999999998877 46899999999999999998865 2345566665
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=3e-59 Score=473.14 Aligned_cols=444 Identities=45% Similarity=0.833 Sum_probs=395.2
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
.|..|++++|+.+++++++++|.||++||++|+++.|.|.++++.+++.++++.|+.|||+.+.. +|++++|.++|++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~--l~~~~~i~~~Pt~ 79 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD--LAQKYGVSGYPTL 79 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH--HHHhCCCccccEE
Confidence 57889999999999999999999999999999999999999999998777789999999999888 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCc
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDY 191 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~ 191 (500)
++|++|+.....|.|.++.+.|.+|+.+.+++.+.++++.++++.++..+...+|+++.+.+......|.++|..+...+
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~ 159 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVY 159 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhcc
Confidence 99998733268999999999999999999999999999999999999999999999998888899999999999999888
Q ss_pred e-EEEeecccccCCCCCCCCCCeEEEeccCCCcc---cccCCC--CHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhc
Q 010824 192 E-FGHTQNAKLLPRGESSVTGPVVRLFKPFDELF---VDFKDF--KVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFN 265 (500)
Q Consensus 192 ~-f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~---~~~~~~--~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~ 265 (500)
. |+.+.+...+.. ++...+.+++|+..+... .+.|+. +.++|..||..+++|.+++++. .++..++.
T Consensus 160 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~-----~~~~~~~~ 232 (462)
T TIGR01130 160 FFFAHSSDVAAFAK--LGAFPDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQ-----ETAAKYFE 232 (462)
T ss_pred ceEEecCCHHHHhh--cCCCCCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCC-----cchhhHhC
Confidence 7 555556667777 677778888887654443 566665 5589999999999999999999 68888887
Q ss_pred CCCceEEEEEeCCCCC--chHHHHHHHHHHHhhcC-ceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC-Ccc-CC
Q 010824 266 SPNAKAMLFMNFSSEG--TEPIQSKYREVAEQYKG-QGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG-QKY-LK 340 (500)
Q Consensus 266 ~~~~~~~l~~~~~~~~--~~~~~~~l~~va~~~~~-~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~-~~y-~~ 340 (500)
.+ +.+++|+..+... .+++.+.++++|.+|++ + +.|+++|+..+..+++.+|++....|++++++.++ .+| +.
T Consensus 233 ~~-~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-i~f~~~d~~~~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~ 310 (462)
T TIGR01130 233 SG-PLVVLYYNVDESLDPFEELRNRFLEAAKKFRGKF-VNFAVADEEDFGRELEYFGLKAEKFPAVAIQDLEGNKKYPMD 310 (462)
T ss_pred CC-CceeEEEEecCCchHHHHHHHHHHHHHHHCCCCe-EEEEEecHHHhHHHHHHcCCCccCCceEEEEeCCcccccCCC
Confidence 77 7777766543332 48899999999999997 6 99999999999999999999987899999999988 678 66
Q ss_pred C-CCChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHH
Q 010824 341 P-NLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA 419 (500)
Q Consensus 341 ~-~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~ 419 (500)
+ .++.++|.+|++++++|+++++++|+++|+.+.+.+..+++++|.+.+.+.+++++|+||++||++|+.+.|.+.+++
T Consensus 311 ~~~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~ 390 (462)
T TIGR01130 311 QEEFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELA 390 (462)
T ss_pred cCCCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHH
Confidence 4 899999999999999999999999999998777889999999999999888999999999999999999999999999
Q ss_pred HHcCC-CCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc--eEEecCCCCHHHHHHHHHhhcCCCCCC
Q 010824 420 VSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGDRTKEDIVDFIENNRDKAAPK 488 (500)
Q Consensus 420 ~~~~~-~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~g~~~~~~l~~~i~~~~~~~~~~ 488 (500)
..+++ ..++.|+++|++.++... +++.++|++++|++|++ +.++.|..+.++|.+||.+++..+.++
T Consensus 391 ~~~~~~~~~i~~~~id~~~n~~~~--~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 391 EKYKDAESDVVIAKMDATANDVPP--FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred HHhhcCCCcEEEEEEECCCCccCC--CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCcC
Confidence 99976 347999999999887666 89999999999988876 478999999999999999998776543
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=2.8e-36 Score=261.83 Aligned_cols=320 Identities=23% Similarity=0.412 Sum_probs=271.4
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCC--CCCeEEEEEecChhhhHHHHHhcCcccccEEEE
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSH--DPPVVLAKVDANEEANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~--~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~ 113 (500)
++..|++.+++.++.++|.||+.||+.++.+.|.|+++|..++.. .++++.+.|||+.+.. ++.+|.|..|||+.+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~--ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDD--IADKYHINKYPTLKV 78 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhH--HhhhhccccCceeee
Confidence 467899999999999999999999999999999999999999766 3579999999999999 999999999999999
Q ss_pred EecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceE
Q 010824 114 LRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEF 193 (500)
Q Consensus 114 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f 193 (500)
|++|--...+|.|.++.+.|.+||++.+..++.++.+.++++......+..+|++|.+.++..++.++++|..+++++.|
T Consensus 79 frnG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f 158 (375)
T KOG0912|consen 79 FRNGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVF 158 (375)
T ss_pred eeccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEE
Confidence 99983333589999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred EEeecccccCCCCCCCCCCeEEEeccCCCcc--cccCCCCH-HHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCce
Q 010824 194 GHTQNAKLLPRGESSVTGPVVRLFKPFDELF--VDFKDFKV-DALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAK 270 (500)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~-~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (500)
.+-...-..+. . ...-.++++++..... .|.|.++. +++..||..-+.|+++++|. +|.+++...|.|+
T Consensus 159 ~V~~gD~~~~~--~-~~~~~~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiTF-----eN~EELtEEGlPf 230 (375)
T KOG0912|consen 159 LVGFGDLLKPH--E-PPGKNILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREITF-----ENAEELTEEGLPF 230 (375)
T ss_pred EeeccccccCC--C-CCCCceEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhhh-----ccHHHHhhcCCce
Confidence 98774433332 1 1112256666533333 69999865 99999999999999999999 7999999999999
Q ss_pred EEEEEeCCCCCchHHHHHHHHHHHhhcCc--eeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCcc----CCCCCC
Q 010824 271 AMLFMNFSSEGTEPIQSKYREVAEQYKGQ--GISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQKY----LKPNLD 344 (500)
Q Consensus 271 ~~l~~~~~~~~~~~~~~~l~~va~~~~~~--~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~y----~~~~~~ 344 (500)
+++|..+++... ....-..++++..+. .+.|...||..+..-+..+|.+..++|.++|-.... .| +..-..
T Consensus 231 lILf~~kdD~~s--~k~F~~aI~ReL~~e~~~in~l~ADG~~f~hpL~HlgKs~~DLPviaIDsF~H-mylfp~f~di~~ 307 (375)
T KOG0912|consen 231 LILFRKKDDKES--EKIFKNAIARELDDETLAINFLTADGKVFKHPLRHLGKSPDDLPVIAIDSFRH-MYLFPDFNDINI 307 (375)
T ss_pred EEEEecCCcccH--HHHHHHHHHHHhhhhhhccceeecCcceecchHHHhCCCcccCcEEEeeccce-eeecCchhhhcC
Confidence 999998766654 222333445554433 399999999999999999999999999999988887 44 235577
Q ss_pred hhhHHHHHHHHhcCCCCCccccCC
Q 010824 345 ADQIAPWVKEYKEGKVPPFRKSEP 368 (500)
Q Consensus 345 ~~~i~~fi~~~~~G~l~~~~~s~~ 368 (500)
+..|.+|+.+..+|+++..+...+
T Consensus 308 pGkLkqFv~DL~sgklHrefH~~~ 331 (375)
T KOG0912|consen 308 PGKLKQFVADLHSGKLHREFHEGP 331 (375)
T ss_pred ccHHHHHHHHHhCchhhHHhhcCC
Confidence 899999999999999998886544
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=100.00 E-value=5.3e-32 Score=240.73 Aligned_cols=322 Identities=20% Similarity=0.324 Sum_probs=239.1
Q ss_pred ccccCceEEcCccChhhhhccCCeEEEEEECCCChh--hhhhh---H-HHHHHHHHhcCCCCCeEEEEEecChhhhHHHH
Q 010824 27 AESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGH--CKKLA---P-EYEKAASELSSHDPPVVLAKVDANEEANKELA 100 (500)
Q Consensus 27 ~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~--C~~~~---~-~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~ 100 (500)
....++|.+||.+||.+++++.+..+|+||.|.-.. .++.. . .++-+|+.+...+ |.||.||..++.. ++
T Consensus 30 YDGkDRVi~LneKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~g--igfg~VD~~Kd~k--lA 105 (383)
T PF01216_consen 30 YDGKDRVIDLNEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKG--IGFGMVDSKKDAK--LA 105 (383)
T ss_dssp -SSS--CEEE-TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCT--EEEEEEETTTTHH--HH
T ss_pred CCCccceEEcchhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccC--cceEEeccHHHHH--HH
Confidence 345689999999999999999999999999885332 21111 2 4455566665544 9999999999988 99
Q ss_pred HhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhc-cCCeEEEEEecCCCchhHHH
Q 010824 101 SQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIG-EKKVVIIGVFPNFSGEEFEN 179 (500)
Q Consensus 101 ~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~ 179 (500)
+++|+...+++++|..| ....|.|.++++.|++||...+..++..|++..++..|.. ++.+.+|+||.+..+..++.
T Consensus 106 KKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~ 183 (383)
T PF01216_consen 106 KKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKE 183 (383)
T ss_dssp HHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHH
T ss_pred HhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHH
Confidence 99999999999999988 6689999999999999999999999999999999998888 55899999999999999999
Q ss_pred HHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccCCCcc--cccCCCCHHHHHHHHHHccCCcEEEeCCCCCCc
Q 010824 180 YTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDELF--VDFKDFKVDALEKFVEESSIPIVTVFNSDANNH 257 (500)
Q Consensus 180 f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~ 257 (500)
|..+|+.|...+.|+.+.++.++++ ++.+..-+-+|++..+.+ +.....+.++|.+||+.+..|.++++++
T Consensus 184 FeeAAe~F~p~IkFfAtfd~~vAk~--L~lK~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~----- 256 (383)
T PF01216_consen 184 FEEAAEHFQPYIKFFATFDKKVAKK--LGLKLNEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRP----- 256 (383)
T ss_dssp HHHHHHHCTTTSEEEEE-SHHHHHH--HT-STT-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--G-----
T ss_pred HHHHHHhhcCceeEEEEecchhhhh--cCccccceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCCh-----
Confidence 9999999999999999999999999 888888999999975555 5666778899999999999999999999
Q ss_pred cchhhhhcCC--CceEEEEEeCCCCCchHHHHHHHHHHHhhcCc-eeEEEEEcccchhhHH----hhcCCCCCCCceEEE
Q 010824 258 PFVIKFFNSP--NAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQ-GISFLLGDLEASQGAF----QYFGLQESQVPLIVI 330 (500)
Q Consensus 258 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~-~~~f~~~d~~~~~~~~----~~~gi~~~~~P~i~i 330 (500)
.++....... ...++.|+..++.+--++.+.++++|+.+.+. .+.++|+|...+|-+. +.|||+-. .|+|.+
T Consensus 257 ~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGv 335 (383)
T PF01216_consen 257 EDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGV 335 (383)
T ss_dssp GGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEE
T ss_pred hhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeE
Confidence 6755544433 44566777766666689999999999998776 6999999999887655 67899874 699999
Q ss_pred EeCCC--Ccc--CC---CCCChhhHHHHHHHHhcCCCCC
Q 010824 331 QTNDG--QKY--LK---PNLDADQIAPWVKEYKEGKVPP 362 (500)
Q Consensus 331 ~~~~~--~~y--~~---~~~~~~~i~~fi~~~~~G~l~~ 362 (500)
.+... ..| ++ ...+.+.++.||+++++|++..
T Consensus 336 VnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 336 VNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp EETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred EeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 99987 455 43 4579999999999999999864
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=100.00 E-value=1.9e-32 Score=237.37 Aligned_cols=311 Identities=22% Similarity=0.369 Sum_probs=242.0
Q ss_pred cCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccccc
Q 010824 30 KEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 109 (500)
+..|..|+++ |.... ....|+|.||+|||+||+++.|.|.++--.++..+..|+++.+||+..+. ++.++||+|||
T Consensus 27 pt~VeDLddk-Fkdnk-dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~a--iAnefgiqGYP 102 (468)
T KOG4277|consen 27 PTAVEDLDDK-FKDNK-DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPA--IANEFGIQGYP 102 (468)
T ss_pred chhhhhhhHH-hhhcc-cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchh--hHhhhccCCCc
Confidence 3446666653 44443 44589999999999999999999999999999988899999999999999 99999999999
Q ss_pred EEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcC
Q 010824 110 TIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRS 189 (500)
Q Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~ 189 (500)
|+.+|+++ ....|.|.++.+.|++|..+...+.+..|++..+....++.-+.++.+||.+..++++..|..+|...-.
T Consensus 103 TIk~~kgd--~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~ 180 (468)
T KOG4277|consen 103 TIKFFKGD--HAIDYRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFS 180 (468)
T ss_pred eEEEecCC--eeeecCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhhee
Confidence 99999977 7789999999999999999999998888866444445555555555566767888999999999965544
Q ss_pred CceEEEeecccccCCCCCCCC--CCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCC
Q 010824 190 DYEFGHTQNAKLLPRGESSVT--GPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSP 267 (500)
Q Consensus 190 ~~~f~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 267 (500)
...|+ ..++++++. ++.- .|++.+|+...-...+ +.+.++|.+||+..++|.+-..+. .++.++-.++
T Consensus 181 ~a~Ff-SaseeVaPe--~~~~kempaV~VFKDetf~i~d--e~dd~dLseWinRERf~~fLa~dg-----flL~EiG~sG 250 (468)
T KOG4277|consen 181 VARFF-SASEEVAPE--ENDAKEMPAVAVFKDETFEIED--EGDDEDLSEWINRERFPGFLAADG-----FLLAEIGASG 250 (468)
T ss_pred eeeee-ccccccCCc--ccchhhccceEEEccceeEEEe--cCchhHHHHHHhHhhccchhhccc-----chHHHhCcCC
Confidence 44444 335667766 4332 3999999873322233 345688999999999999988888 7888999999
Q ss_pred CceEEEEEeCC-----CCCchHHHHHHHHHHHhhcCc-----eeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCc
Q 010824 268 NAKAMLFMNFS-----SEGTEPIQSKYREVAEQYKGQ-----GISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQK 337 (500)
Q Consensus 268 ~~~~~l~~~~~-----~~~~~~~~~~l~~va~~~~~~-----~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~ 337 (500)
+.+++...+.. .....++..+.+++|+.+++. .++|+|.|+..+..-+. +..-..|+++|++.....
T Consensus 251 KLVaLaVidEkhk~nns~eh~~~~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD~~nqil---M~als~P~l~i~Ntsnqe 327 (468)
T KOG4277|consen 251 KLVALAVIDEKHKFNNSSEHREFHKIAEEAAKDLRDHPDFHNDFQFAHLDGNDLANQIL---MAALSEPHLFIFNTSNQE 327 (468)
T ss_pred ceEEEEEeccccccCCcchhHHHHHHHHHHHHHHHhChhhhhhceeeccchhHHHHHHH---HHhhcCCeEEEEecCchh
Confidence 88888776643 122377888899999888764 49999999986554443 334478999999999855
Q ss_pred c-CC----CCCChhhHHHHHHHHhcCC
Q 010824 338 Y-LK----PNLDADQIAPWVKEYKEGK 359 (500)
Q Consensus 338 y-~~----~~~~~~~i~~fi~~~~~G~ 359 (500)
| +. ...+.++|.+||++...|-
T Consensus 328 YfLse~d~qikniedilqFientsegI 354 (468)
T KOG4277|consen 328 YFLSEDDPQIKNIEDILQFIENTSEGI 354 (468)
T ss_pred eeeccCChhhhhHHHHHHHHhcccccc
Confidence 5 42 4578999999999966554
No 7
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.3e-23 Score=201.34 Aligned_cols=331 Identities=26% Similarity=0.429 Sum_probs=246.8
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
....+......+.+++|.||+|||+||+.+.|.|.+++..+++. +.++.|||+.+.. +|++|+|+++||+.+|.+
T Consensus 36 ~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~~~--~~~~y~i~gfPtl~~f~~ 110 (383)
T KOG0191|consen 36 LDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEHKD--LCEKYGIQGFPTLKVFRP 110 (383)
T ss_pred ccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhhHH--HHHhcCCccCcEEEEEcC
Confidence 45556666688889999999999999999999999999999885 9999999999999 999999999999999998
Q ss_pred CCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEe
Q 010824 117 GGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHT 196 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~ 196 (500)
+ ..+..|.|..+.+.+.+|+...+.+.+......
T Consensus 111 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 144 (383)
T KOG0191|consen 111 G-KKPIDYSGPRNAESLAEFLIKELEPSVKKLVEG--------------------------------------------- 144 (383)
T ss_pred C-CceeeccCcccHHHHHHHHHHhhccccccccCC---------------------------------------------
Confidence 8 778999999999999999999998766554111
Q ss_pred ecccccCCCCCCCCCCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhh-hhcCCCceEEEEE
Q 010824 197 QNAKLLPRGESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIK-FFNSPNAKAMLFM 275 (500)
Q Consensus 197 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 275 (500)
.+..++. .++.. ........++.|+
T Consensus 145 -------------------------------------------------~v~~l~~-----~~~~~~~~~~~~~~lv~f~ 170 (383)
T KOG0191|consen 145 -------------------------------------------------EVFELTK-----DNFDETVKDSDADWLVEFY 170 (383)
T ss_pred -------------------------------------------------ceEEccc-----cchhhhhhccCcceEEEEe
Confidence 0000011 12222 1223344555566
Q ss_pred eCCCCCchHHHHHHHHHHHhhcC-ceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCC-cc-CCCCCChhhHHHHH
Q 010824 276 NFSSEGTEPIQSKYREVAEQYKG-QGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQ-KY-LKPNLDADQIAPWV 352 (500)
Q Consensus 276 ~~~~~~~~~~~~~l~~va~~~~~-~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~-~y-~~~~~~~~~i~~fi 352 (500)
.+.|..++.....+.+++..+.. ..+.++.+|+......+..+++. .+|++.++..+.. .+ +.+..+.+.+..|+
T Consensus 171 aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~--~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v 248 (383)
T KOG0191|consen 171 APWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVR--GYPTLKLFPPGEEDIYYYSGLRDSDSIVSFV 248 (383)
T ss_pred ccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhccc--CCceEEEecCCCcccccccccccHHHHHHHH
Confidence 66888888899999999998873 45999999999899999999999 9999999988886 44 77999999999999
Q ss_pred HHHhcCCCCCcc-ccCCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHH-cCCCCceEE
Q 010824 353 KEYKEGKVPPFR-KSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVS-YQNDADVVI 430 (500)
Q Consensus 353 ~~~~~G~l~~~~-~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~-~~~~~~~~~ 430 (500)
.+...-...+.. ++-.-++.....+. +.+.+.... ......++.|+++||.+|....|.+...+.. +.....+.+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (383)
T KOG0191|consen 249 EKKERRNIPEPELKEIEDKDTFSPTFL--DTAEFLDSL-EKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKA 325 (383)
T ss_pred HhhcCCCCCCcccccccCccccccchh--hhhhhhhhh-HHhhhhHhhhhcchhhcccccchhHHHHHhcccccccccee
Confidence 997766422211 11111100000011 112222222 3456789999999999999999999999887 334458999
Q ss_pred EEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCC-HHHHHHH
Q 010824 431 AKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRT-KEDIVDF 477 (500)
Q Consensus 431 ~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~-~~~l~~~ 477 (500)
.++++.....++.....+.+|++.++..+.......|.+. .+.+...
T Consensus 326 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 373 (383)
T KOG0191|consen 326 AKLDCALLKSLCQKAIVRGYPTIKLYNYGKNPSNIVGLILGIQALDSR 373 (383)
T ss_pred eccccccccchhhHhhhhcCceeEeeccccccccccCceeehhhhhhh
Confidence 9999999888888888999999999976655555444333 4444333
No 8
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.87 E-value=3.6e-21 Score=169.38 Aligned_cols=178 Identities=31% Similarity=0.583 Sum_probs=159.0
Q ss_pred ecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccCCCcc-cccCC-CCHHHHHHHHHHccCCc
Q 010824 169 FPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDELF-VDFKD-FKVDALEKFVEESSIPI 246 (500)
Q Consensus 169 ~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~-~~~~~l~~~i~~~~~p~ 246 (500)
|.+.++..++.|.++|+.+++++.|+.+.+++++++ ++++.|++++||..++.. .|.|+ ++.++|.+||..+++|+
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~--~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~ 78 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKK--YGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL 78 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHH--CTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHH--hCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc
Confidence 567788999999999999999999999999999999 998889999999977765 88888 89999999999999999
Q ss_pred EEEeCCCCCCccchhhhhcCCCc-eEEEEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCC
Q 010824 247 VTVFNSDANNHPFVIKFFNSPNA-KAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQV 325 (500)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~ 325 (500)
+.+++. .|+..++..+++ ++++|.+.+....+.+.+.++++|.+++++ +.|+|+|+..++++++.+|++..++
T Consensus 79 v~~~t~-----~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~~~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 79 VPELTP-----ENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDADDFPRLLKYFGIDEDDL 152 (184)
T ss_dssp CEEEST-----THHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETTTTHHHHHHTTTTTSSS
T ss_pred ccccch-----hhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehHHhHHHHHHcCCCCccC
Confidence 999999 799999999988 555665555666699999999999999999 9999999999999999999999999
Q ss_pred ceEEEEeCCC-Cc-c-CCCCCChhhHHHHHHH
Q 010824 326 PLIVIQTNDG-QK-Y-LKPNLDADQIAPWVKE 354 (500)
Q Consensus 326 P~i~i~~~~~-~~-y-~~~~~~~~~i~~fi~~ 354 (500)
|++++++..+ .+ | +.++++.++|.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999999776 33 3 4689999999999975
No 9
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.86 E-value=4.1e-21 Score=151.07 Aligned_cols=102 Identities=23% Similarity=0.391 Sum_probs=92.9
Q ss_pred cCceEEcCccChhhh---hccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHH-HhcCc
Q 010824 30 KEFVLTLDHSNFSDT---VSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELA-SQYEI 105 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~---~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~-~~~~i 105 (500)
.+.|++|++++|..+ ++++++++|.||++||++|+.+.|.|+++++.+++. +.|++|||+.+.. +| ++|+|
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~~--l~~~~~~I 82 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQG--KCRKQKHF 82 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCChH--HHHHhcCC
Confidence 456899999999987 589999999999999999999999999999999764 9999999998888 99 58999
Q ss_pred ccccEEEEEecCCceeeecCCCCCHHHHHHHH
Q 010824 106 RGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 106 ~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
.++||+++|++| +...+|.|.++.+.|..|+
T Consensus 83 ~~~PTl~lf~~g-~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 83 FYFPVIHLYYRS-RGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cccCEEEEEECC-ccceEEeCCCCHHHHHhhC
Confidence 999999999876 6678999999999999874
No 10
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=1.7e-20 Score=147.07 Aligned_cols=100 Identities=25% Similarity=0.612 Sum_probs=92.5
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
.+.+|+.++|+..++++++++|+||++||++|+.+.|.|.++++++++. +.|+.|||+.++. +|++++|+++||+
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~~--~~~~~~v~~~Pt~ 76 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDRM--LCRSQGVNSYPSL 76 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccHH--HHHHcCCCccCEE
Confidence 4778999999999999999999999999999999999999999999764 9999999999888 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHH
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
++|++| +...+|.|.++.+.|.+|.
T Consensus 77 ~~~~~g-~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 77 YVFPSG-MNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred EEEcCC-CCcccCCCCCCHHHHHhhC
Confidence 999876 6778999999999998873
No 11
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.83 E-value=4.4e-20 Score=146.56 Aligned_cols=104 Identities=33% Similarity=0.696 Sum_probs=93.4
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCC---CCeEEEEEecChhhhHHHHHhcCcccc
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHD---PPVVLAKVDANEEANKELASQYEIRGF 108 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~---~~v~~~~vd~~~~~~~~~~~~~~i~~~ 108 (500)
.|..+++++|+..++++++++|.||++||++|+++.|.|.++++.+++.. +.+.++.|||+.+.. +|++|+|+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~--l~~~~~v~~~ 79 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD--IADRYRINKY 79 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH--HHHhCCCCcC
Confidence 57889999999999999999999999999999999999999999885431 359999999999887 9999999999
Q ss_pred cEEEEEecCCceeeecCCCCCHHHHHHHH
Q 010824 109 PTIKILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 109 P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
|++++|++|......|.|.++.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999998743568999999999999985
No 12
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=8.4e-20 Score=144.07 Aligned_cols=101 Identities=37% Similarity=0.716 Sum_probs=91.8
Q ss_pred ceEEcCccChhhhh-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE
Q 010824 32 FVLTLDHSNFSDTV-SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110 (500)
Q Consensus 32 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~ 110 (500)
.+..+++++|++.+ +++++++|.||++||++|+.+.|.|+++++++.+. +.|+.|||+..+. +|++++|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~~--~~~~~~i~~~Pt 76 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYES--LCQQANIRAYPT 76 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchHH--HHHHcCCCcccE
Confidence 46788999999987 55679999999999999999999999999998654 9999999999888 999999999999
Q ss_pred EEEEecCCceeeecCCCCC-HHHHHHHH
Q 010824 111 IKILRNGGKTIQEYKGPRE-ADGIVEYL 137 (500)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~~-~~~l~~~i 137 (500)
+++|++||+...+|.|..+ .++|.+||
T Consensus 77 ~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 77 IRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 9999988788899999987 99999885
No 13
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.81 E-value=3.8e-19 Score=156.82 Aligned_cols=106 Identities=32% Similarity=0.649 Sum_probs=95.3
Q ss_pred cCceEEcCccChhhhhcc-----CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcC
Q 010824 30 KEFVLTLDHSNFSDTVSK-----HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYE 104 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~~~-----~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~ 104 (500)
.+.+.++++++|++.++. +++++|+||++||++|+++.|.|+++++.+++. +.++.+||+.++. +|++|+
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~~--l~~~~~ 103 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRALN--LAKRFA 103 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccHH--HHHHcC
Confidence 567999999999998853 478999999999999999999999999999764 9999999999887 999999
Q ss_pred cccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 105 IRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
|+++|++++|++| +....+.|.++.+.|.+|+.+..
T Consensus 104 I~~~PTl~~f~~G-~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 104 IKGYPTLLLFDKG-KMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCcCCEEEEEECC-EEEEeeCCCCCHHHHHHHHHHHH
Confidence 9999999999976 66666678899999999998765
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=4.2e-19 Score=140.15 Aligned_cols=102 Identities=39% Similarity=0.809 Sum_probs=94.8
Q ss_pred eEEcCccChhhhhcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 33 VLTLDHSNFSDTVSK-HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 33 v~~l~~~~~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
|..+++++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+.+ ++.|+.|||+.... +|++|+|.++|++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~--l~~~~~v~~~Pt~ 75 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKE--LCKKYGVKSVPTI 75 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHH--HHHHTTCSSSSEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccch--hhhccCCCCCCEE
Confidence 467899999999987 89999999999999999999999999999976 39999999998877 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
++|++| +...+|.|.++.+.|.+||+++
T Consensus 76 ~~~~~g-~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 76 IFFKNG-KEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EEEETT-EEEEEEESSSSHHHHHHHHHHH
T ss_pred EEEECC-cEEEEEECCCCHHHHHHHHHcC
Confidence 999987 6777999999999999999874
No 15
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.80 E-value=4.4e-19 Score=139.54 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=94.1
Q ss_pred CCCCeEEEeccchhhhh--hcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC-CCCCcCc
Q 010824 373 NNEPVKVLVADSLQDMV--FNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG-DTFEVQG 449 (500)
Q Consensus 373 ~~~~~~~l~~~~~~~~~--~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~i~~ 449 (500)
..+.+.+|+.++|++.+ .+.++.++|.||++||++|+.+.|.|.++++.+++ .+.|++||++.+..++ ++|+|.+
T Consensus 7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~ 84 (113)
T cd03006 7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFY 84 (113)
T ss_pred CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCcc
Confidence 44669999999999973 47899999999999999999999999999999976 5999999999998888 5799999
Q ss_pred ceEEEEEcCCCceEEecCCCCHHHHHHHH
Q 010824 450 YPTVFFRSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 450 ~P~~~~~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
+||+.+|.+|..+.+|.|..+.+.|..|+
T Consensus 85 ~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 85 FPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred cCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 99999998887788999999999999873
No 16
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.6e-19 Score=141.14 Aligned_cols=106 Identities=29% Similarity=0.509 Sum_probs=98.9
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
.+..++..+|++.+.+.+.+|+|.|||+||++|+.+.|.+++++..+.+ .+.++++|++++..+..+|+|..+|++++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvlv 121 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVLV 121 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEEE
Confidence 4667899999999999999999999999999999999999999999977 79999999999999999999999999999
Q ss_pred EcCCCceEEecCCCCHHHHHHHHHhhcC
Q 010824 456 RSASGKTVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
|++|.+..++.|..+.+.+.++|++.+.
T Consensus 122 fknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 122 FKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 9877777799999999999999998764
No 17
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1e-17 Score=163.64 Aligned_cols=215 Identities=25% Similarity=0.435 Sum_probs=190.2
Q ss_pred chhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCcc
Q 010824 259 FVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQKY 338 (500)
Q Consensus 259 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~y 338 (500)
..........+.++.|+.+.|..++.+...+++++..++++ +.++.+|+..+.++|+.+++. +.|++.++.++....
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~~~~~~~~~~y~i~--gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDCDEHKDLCEKYGIQ--GFPTLKVFRPGKKPI 115 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCchhhHHHHHhcCCc--cCcEEEEEcCCCcee
Confidence 44566777889999999999999999999999999999998 999999999999999999999 999999999994333
Q ss_pred -CCCCCChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHH
Q 010824 339 -LKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDE 417 (500)
Q Consensus 339 -~~~~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~ 417 (500)
+.+..+.+.+..|+..-+......... ..+..++..+|...+.+.+.+++|.||+|||++|+.+.|.|.+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~ 186 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSVKKLVE---------GEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEK 186 (383)
T ss_pred eccCcccHHHHHHHHHHhhccccccccC---------CceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHH
Confidence 778999999999999877655443211 1488999999999998899999999999999999999999999
Q ss_pred HHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc-eEEecCCCCHHHHHHHHHhhcCCC
Q 010824 418 VAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK-TVPYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
++..+.....+.++.+|++.+...+..+.+.++|++.+|++|.+ ...+.|.++.+.+.+|+++..+..
T Consensus 187 ~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 187 LAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred HHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCC
Confidence 99998755689999999998888888899999999999998888 667789999999999999988764
No 18
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=1.9e-18 Score=135.58 Aligned_cols=100 Identities=31% Similarity=0.691 Sum_probs=88.8
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
.|..++.++|++++++ + ++|.||++||++|+.+.|.|+++++.++. ..+.++.+||+.++. +|++|+|.++|++
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~--~~~~~~i~~~Pt~ 75 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPG--LSGRFFVTALPTI 75 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHh--HHHHcCCcccCEE
Confidence 5788999999998854 3 78999999999999999999999998753 349999999998888 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHHHh
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
++|++| + ..+|.|.++.+.|.+|+++
T Consensus 76 ~~~~~g-~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 76 YHAKDG-V-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred EEeCCC-C-EEEecCCCCHHHHHHHHhC
Confidence 999876 4 4789999999999999874
No 19
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.78 E-value=1.3e-18 Score=135.55 Aligned_cols=99 Identities=22% Similarity=0.481 Sum_probs=85.8
Q ss_pred eEEcCccChhhhhccCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhcCCCCCeEEEEEecC-----hhhhHHHHHh
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYA--PWCG---HCKKLAPEYEKAASELSSHDPPVVLAKVDAN-----EEANKELASQ 102 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~--~~c~---~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-----~~~~~~~~~~ 102 (500)
+..|++.||++.+.+++.+||.||+ |||+ ||+++.|.+.+++.. |.++.|||+ .+.+ ||++
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~~~--L~~~ 73 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLNME--LGER 73 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhhHH--HHHH
Confidence 6789999999999999999999999 9999 888887777766543 889999995 3444 9999
Q ss_pred cCcc--cccEEEEEecCC-ceeeecCCC-CCHHHHHHHHHhh
Q 010824 103 YEIR--GFPTIKILRNGG-KTIQEYKGP-READGIVEYLKKQ 140 (500)
Q Consensus 103 ~~i~--~~P~~~~~~~~~-~~~~~~~g~-~~~~~l~~~i~~~ 140 (500)
|+|+ +|||+.+|++|. .....|.|. ++.+.|.+||.+.
T Consensus 74 y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 74 YKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred hCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 9999 999999999873 355789997 9999999999875
No 20
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.77 E-value=2.6e-18 Score=136.95 Aligned_cols=103 Identities=46% Similarity=0.885 Sum_probs=91.0
Q ss_pred eEEcCccChhhhh-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 33 VLTLDHSNFSDTV-SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 33 v~~l~~~~~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
|..+++++|+..+ +.+++++|.||++||++|+++.|.|.++++.+.+. +.++.+||+.+...++|++|+|.++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 6789999999998 45667999999999999999999999999998754 8899999999444459999999999999
Q ss_pred EEEecCC----ceeeecCCCCCHHHHHHHHH
Q 010824 112 KILRNGG----KTIQEYKGPREADGIVEYLK 138 (500)
Q Consensus 112 ~~~~~~~----~~~~~~~g~~~~~~l~~~i~ 138 (500)
++|++|+ .....|.|.++.+.|.+||.
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 9999885 35678999999999999973
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=3.3e-18 Score=134.62 Aligned_cols=101 Identities=39% Similarity=0.908 Sum_probs=90.9
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEE
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~ 112 (500)
+..+++++|+..+.++ .++|.||++||++|+.+.|.|.++++++++..+.+.++.+||+.+.. +|++++|.++|+++
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~v~~~Pt~~ 78 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE--LCSEFQVRGYPTLL 78 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh--hHhhcCCCcCCEEE
Confidence 5688999999999776 49999999999999999999999999997633459999999999887 99999999999999
Q ss_pred EEecCCceeeecCCCCCHHHHHHHH
Q 010824 113 ILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 113 ~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
+|++| +...+|.|.++.+.|.+||
T Consensus 79 ~~~~g-~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 79 LFKDG-EKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EEeCC-CeeeEeeCCCCHHHHHhhC
Confidence 99876 6778999999999998875
No 22
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.76 E-value=2.1e-18 Score=136.13 Aligned_cols=103 Identities=34% Similarity=0.685 Sum_probs=96.7
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR 456 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 456 (500)
|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ ++.|+.+|++.+..+++++++.++|++++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999966689999999999999999999999999999987 799999999999999999999999999999
Q ss_pred cCCCceEEecCCCCHHHHHHHHHhh
Q 010824 457 SASGKTVPYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 457 ~~~~~~~~~~g~~~~~~l~~~i~~~ 481 (500)
..|+...++.|..+.++|.+||++|
T Consensus 79 ~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred ECCcEEEEEECCCCHHHHHHHHHcC
Confidence 8888788999999999999999975
No 23
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.76 E-value=2.6e-18 Score=134.63 Aligned_cols=99 Identities=28% Similarity=0.533 Sum_probs=91.3
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
.+.+++.++|+..+ ..++.++|+||++||++|+.+.|.|.+++..+++ .+.|+++|++.++.++++++++++|++++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 47789999999988 5669999999999999999999999999999976 59999999999999999999999999999
Q ss_pred EcCCCceEEecCCCCHHHHHHH
Q 010824 456 RSASGKTVPYEGDRTKEDIVDF 477 (500)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~l~~~ 477 (500)
|+.|..+.+|.|..+.+.|.+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhh
Confidence 9887777799999999999887
No 24
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.76 E-value=2.1e-18 Score=136.13 Aligned_cols=101 Identities=28% Similarity=0.590 Sum_probs=92.3
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
.+.+++.++|++.+.+.+++++|.||++||++|+.+.|.|.+++..+++ .+.|+++|++.++.++++++++++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 3678899999999988888999999999999999999999999999865 69999999999999998999999999999
Q ss_pred EcCC-CceEEecCCCC-HHHHHHHH
Q 010824 456 RSAS-GKTVPYEGDRT-KEDIVDFI 478 (500)
Q Consensus 456 ~~~~-~~~~~~~g~~~-~~~l~~~i 478 (500)
|++| +.+.+|.|..+ .++|.+||
T Consensus 80 ~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCCCceEccCCCCCHHHHHhhC
Confidence 9888 55779999987 99999885
No 25
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.76 E-value=6.2e-18 Score=133.72 Aligned_cols=106 Identities=19% Similarity=0.316 Sum_probs=91.4
Q ss_pred ccCceEEcCccChhhhhccCC-eEEEEEECCCChh--hh--hhhHHHHHHHHHh--cCCCCCeEEEEEecChhhhHHHHH
Q 010824 29 SKEFVLTLDHSNFSDTVSKHN-FIVVEFYAPWCGH--CK--KLAPEYEKAASEL--SSHDPPVVLAKVDANEEANKELAS 101 (500)
Q Consensus 29 ~~~~v~~l~~~~~~~~~~~~~-~~lv~f~~~~c~~--C~--~~~~~~~~~~~~~--~~~~~~v~~~~vd~~~~~~~~~~~ 101 (500)
..+.|..||++||++.+.+++ +++++|++.||++ |+ .+.|.+.+++.++ .+. +.|+.||++.++. +|+
T Consensus 7 ~~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~---v~~~kVD~d~~~~--La~ 81 (120)
T cd03065 7 GKDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG---IGFGLVDSKKDAK--VAK 81 (120)
T ss_pred CCcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC---CEEEEEeCCCCHH--HHH
Confidence 356789999999999986665 6777888888865 99 7888888888887 443 9999999999988 999
Q ss_pred hcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 102 QYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 102 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
+|+|+++||+++|++| +.+. |.|.++.+.|.+||.+.+
T Consensus 82 ~~~I~~iPTl~lfk~G-~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 82 KLGLDEEDSIYVFKDD-EVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HcCCccccEEEEEECC-EEEE-eeCCCCHHHHHHHHHHHh
Confidence 9999999999999986 6555 999999999999998764
No 26
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.76 E-value=5.3e-18 Score=134.52 Aligned_cols=102 Identities=25% Similarity=0.583 Sum_probs=89.7
Q ss_pred ceEEcCccChhhhh---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh-hhhHHHHH-hcCcc
Q 010824 32 FVLTLDHSNFSDTV---SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-EANKELAS-QYEIR 106 (500)
Q Consensus 32 ~v~~l~~~~~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~-~~~i~ 106 (500)
.|..++.++|+.++ +++++++|.||++||++|+++.|.|.++++.+++. .+.++.|||+. +.. +|. .++++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~--~~~~~~vd~d~~~~~--~~~~~~~v~ 77 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS--NVKVAKFNADGEQRE--FAKEELQLK 77 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC--CeEEEEEECCccchh--hHHhhcCCC
Confidence 47789999999998 35789999999999999999999999999999742 49999999997 455 887 49999
Q ss_pred cccEEEEEecCCceeeecCCC-CCHHHHHHHH
Q 010824 107 GFPTIKILRNGGKTIQEYKGP-READGIVEYL 137 (500)
Q Consensus 107 ~~P~~~~~~~~~~~~~~~~g~-~~~~~l~~~i 137 (500)
++|++++|++|+.....|.|. ++.+.|.+||
T Consensus 78 ~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 78 SFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999999887778899995 8999999885
No 27
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.2e-18 Score=135.16 Aligned_cols=105 Identities=32% Similarity=0.594 Sum_probs=96.0
Q ss_pred ceEEcCccChhhhh-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE
Q 010824 32 FVLTLDHSNFSDTV-SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110 (500)
Q Consensus 32 ~v~~l~~~~~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~ 110 (500)
.+..++..+|++.+ +...||+|+|||+||++|+.+.|.++++++.+++. +.++.||.+.+.+ ++.+|+|..+||
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~e--la~~Y~I~avPt 118 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHPE--LAEDYEISAVPT 118 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEccccccc--hHhhcceeeeeE
Confidence 44567888888876 77889999999999999999999999999999887 9999999999999 999999999999
Q ss_pred EEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 111 IKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+++|++| +...++-|..+.+.|.++|++.++
T Consensus 119 vlvfknG-e~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 119 VLVFKNG-EKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEEEECC-EEeeeecccCCHHHHHHHHHHHhc
Confidence 9999976 888899999999999999998764
No 28
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.74 E-value=1.5e-17 Score=131.17 Aligned_cols=100 Identities=49% Similarity=0.862 Sum_probs=90.5
Q ss_pred eEEcCccChhhhhcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 33 VLTLDHSNFSDTVSK-HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 33 v~~l~~~~~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
|..+++++|++.+.+ +++++|+||++||++|+.+.|.|.++++.+.+. +.++.+||+..+. ++++++|+++|++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~~--~~~~~~i~~~P~~ 76 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQS--LAQQYGVRGFPTI 76 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchHH--HHHHCCCCccCEE
Confidence 678899999999854 556999999999999999999999999998764 9999999998888 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHH
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
++|++|......|.|.++.+.|.+|+
T Consensus 77 ~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 77 KVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EEECCCCcceeecCCCCCHHHHHHHh
Confidence 99998756678999999999999997
No 29
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.74 E-value=2.3e-17 Score=129.93 Aligned_cols=101 Identities=53% Similarity=0.972 Sum_probs=92.6
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
|++++|+..+.++++++|+||++||++|+.+.+.|..+++.+++. +++.++.+||+.+.. +|++|+|.++|++++|+
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~--~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD-PDIVLAKVDATAEKD--LASRFGVSGFPTIKFFP 77 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-CceEEEEEEccchHH--HHHhCCCCcCCEEEEec
Confidence 577899999999999999999999999999999999999999763 359999999999888 99999999999999999
Q ss_pred cCCceeeecCCCCCHHHHHHHHHhh
Q 010824 116 NGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 116 ~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
+|+. ...|.|..+.+.|..||.+.
T Consensus 78 ~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CCCc-ceeecCCCCHHHHHHHHHhc
Confidence 8855 78999999999999999875
No 30
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.73 E-value=1.8e-17 Score=131.64 Aligned_cols=100 Identities=22% Similarity=0.413 Sum_probs=87.8
Q ss_pred EcCccChhhhh---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 35 TLDHSNFSDTV---SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 35 ~l~~~~~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
.++.++|.+.+ ..+++++|.||++||++|+.+.|.|.++++++.+. ++.++.|||+.++. ++++++|.++|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~--~v~~~~vd~d~~~~--l~~~~~V~~~Pt~ 83 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL--GVGIATVNAGHERR--LARKLGAHSVPAI 83 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc--CceEEEEeccccHH--HHHHcCCccCCEE
Confidence 45677787543 36789999999999999999999999999999752 38999999999888 9999999999999
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHHHh
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
++|++| +....+.|..+.+.|.+||.+
T Consensus 84 ~i~~~g-~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 84 VGIING-QVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EEEECC-EEEEEecCCCCHHHHHHHHhc
Confidence 999865 777888999999999999976
No 31
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.73 E-value=1e-17 Score=132.93 Aligned_cols=102 Identities=27% Similarity=0.562 Sum_probs=90.8
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC----CceEEEEEeCCCCCCCCCCCCcCcce
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND----ADVVIAKFDATANDIPGDTFEVQGYP 451 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~~~~~~~~~i~~~P 451 (500)
.+.++++++|++.+ +.++.++|.||++||++|+++.|.|++++..+++. .++.++++|++.++.++++++++++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 47789999999987 77889999999999999999999999999887431 25999999999999999999999999
Q ss_pred EEEEEcCCCc-eEEecCCCCHHHHHHHH
Q 010824 452 TVFFRSASGK-TVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 452 ~~~~~~~~~~-~~~~~g~~~~~~l~~~i 478 (500)
++++|++|.. ...|.|..+.++|.+||
T Consensus 81 tl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 9999987774 57889999999999986
No 32
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.73 E-value=1.2e-16 Score=142.91 Aligned_cols=192 Identities=12% Similarity=0.194 Sum_probs=145.7
Q ss_pred hcCCCceEEEEEe---CCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCc-c-
Q 010824 264 FNSPNAKAMLFMN---FSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQK-Y- 338 (500)
Q Consensus 264 ~~~~~~~~~l~~~---~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~-y- 338 (500)
+.++..+++ |+. ..|..|+.....+++++.++.+-.+.++.+|....+++++.+|+. ..|++++++.+... .
T Consensus 17 ~~~~~~i~~-f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~--~~Pt~~~f~~g~~~~~~ 93 (215)
T TIGR02187 17 LKNPVEIVV-FTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVE--RVPTTIILEEGKDGGIR 93 (215)
T ss_pred cCCCeEEEE-EcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCC--ccCEEEEEeCCeeeEEE
Confidence 445555444 544 578889999999999999995423567777777999999999999 99999999876632 2
Q ss_pred CCCCCChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCC-eEEEEEECCCChhHhhhhHHHHH
Q 010824 339 LKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGK-NVLLEFYAPWCGHCKKLAPILDE 417 (500)
Q Consensus 339 ~~~~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~ 417 (500)
+.|..+.+.+..|++.+++ --.. ...++.++.+.+- ..++ ..++.||++||++|+.+.+.+.+
T Consensus 94 ~~G~~~~~~l~~~i~~~~~-~~~~--------------~~~L~~~~~~~l~-~~~~pv~I~~F~a~~C~~C~~~~~~l~~ 157 (215)
T TIGR02187 94 YTGIPAGYEFAALIEDIVR-VSQG--------------EPGLSEKTVELLQ-SLDEPVRIEVFVTPTCPYCPYAVLMAHK 157 (215)
T ss_pred EeecCCHHHHHHHHHHHHH-hcCC--------------CCCCCHHHHHHHH-hcCCCcEEEEEECCCCCCcHHHHHHHHH
Confidence 5577888999999988752 1000 1123333333332 3344 45556999999999999999999
Q ss_pred HHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHh
Q 010824 418 VAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 418 ~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 480 (500)
++.... ++.+..+|.+.++...+++++.++|+++++..|. ++.|..+.+++.+||.+
T Consensus 158 l~~~~~---~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~---~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 158 FALAND---KILGEMIEANENPDLAEKYGVMSVPKIVINKGVE---EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHhcC---ceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE---EEECCCCHHHHHHHHHh
Confidence 987742 6999999999999999999999999999995442 38899999999999975
No 33
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.72 E-value=2.7e-17 Score=127.67 Aligned_cols=84 Identities=24% Similarity=0.588 Sum_probs=76.4
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecC-hhhhHHHHHhcCcccccEEEEEecCCceeeec
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN-EEANKELASQYEIRGFPTIKILRNGGKTIQEY 124 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~ 124 (500)
.++++++|.||++||++|+.+.|.|+++++.+.+ +.++.||++ ..+. ++++|+|.++||+++|++| ...+|
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~--l~~~~~V~~~PT~~lf~~g--~~~~~ 87 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPS--LLSRYGVVGFPTILLFNST--PRVRY 87 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHH--HHHhcCCeecCEEEEEcCC--ceeEe
Confidence 5789999999999999999999999999999864 778999988 6666 9999999999999999976 67899
Q ss_pred CCCCCHHHHHHHH
Q 010824 125 KGPREADGIVEYL 137 (500)
Q Consensus 125 ~g~~~~~~l~~~i 137 (500)
.|.++.+.|.+|+
T Consensus 88 ~G~~~~~~l~~f~ 100 (100)
T cd02999 88 NGTRTLDSLAAFY 100 (100)
T ss_pred cCCCCHHHHHhhC
Confidence 9999999999985
No 34
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=4.1e-17 Score=128.96 Aligned_cols=101 Identities=54% Similarity=0.992 Sum_probs=91.2
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR 456 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 456 (500)
+.+|++++|++.+.+.+++++|+||++||++|+.+.|.|.+++..+++..++.++++|++.++ .+..+++.++|++++|
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-VPSEFVVDGFPTILFF 80 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-hhhhccCCCCCEEEEE
Confidence 788999999999977789999999999999999999999999999976557999999999885 4555889999999999
Q ss_pred cCCC--ceEEecCCCCHHHHHHHH
Q 010824 457 SASG--KTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 457 ~~~~--~~~~~~g~~~~~~l~~~i 478 (500)
++|+ ...+|.|..+.++|.+||
T Consensus 81 ~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcCCceEccCCcCHHHHHhhC
Confidence 8887 477899999999999986
No 35
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.72 E-value=4.5e-17 Score=128.69 Aligned_cols=103 Identities=44% Similarity=0.896 Sum_probs=91.4
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEE
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~ 112 (500)
+..+++.+|+..++++++++|+||++||++|+.+.|.+..+++.+.. ...+.++.+||+.+....++++++|+++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 57789999999999999999999999999999999999999999874 23489999999984344499999999999999
Q ss_pred EEecCCceeeecCCCCCHHHHHHHH
Q 010824 113 ILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 113 ~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
+|++| +...+|.|..+.+.+.+|+
T Consensus 81 ~~~~g-~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENG-KFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCC-CeeEEeCCCCCHHHHHhhC
Confidence 99976 6778999999999999885
No 36
>PRK09381 trxA thioredoxin; Provisional
Probab=99.72 E-value=9.6e-17 Score=127.69 Aligned_cols=105 Identities=28% Similarity=0.616 Sum_probs=94.6
Q ss_pred CceEEcCccChhhh-hccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccccc
Q 010824 31 EFVLTLDHSNFSDT-VSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109 (500)
Q Consensus 31 ~~v~~l~~~~~~~~-~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 109 (500)
+.|.++++++|.+. ++.+++++|+||++||++|+.+.|.++++++.+.+. +.++.+||+.... ++++|++.++|
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~~--~~~~~~v~~~P 77 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNPG--TAPKYGIRGIP 77 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCChh--HHHhCCCCcCC
Confidence 55788999999975 566889999999999999999999999999999764 9999999999888 99999999999
Q ss_pred EEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 110 TIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
++++|++| +...++.|..+.+.|.+++.+.+
T Consensus 78 t~~~~~~G-~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 78 TLLLFKNG-EVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEEEeCC-eEEEEecCCCCHHHHHHHHHHhc
Confidence 99999865 77789999999999999998765
No 37
>PHA02278 thioredoxin-like protein
Probab=99.72 E-value=4.1e-17 Score=126.24 Aligned_cols=95 Identities=12% Similarity=0.255 Sum_probs=82.1
Q ss_pred ccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEEEe
Q 010824 38 HSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 38 ~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~~~ 115 (500)
.++|.+.+.++++++|+||++||++|+.+.|.++++++++... +.|+.+|++.++ ..+++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 4578888889999999999999999999999999999886443 678999988763 13399999999999999999
Q ss_pred cCCceeeecCCCCCHHHHHHH
Q 010824 116 NGGKTIQEYKGPREADGIVEY 136 (500)
Q Consensus 116 ~~~~~~~~~~g~~~~~~l~~~ 136 (500)
+| +.+.+..|..+.+.|.++
T Consensus 81 ~G-~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DG-QLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CC-EEEEEEeCCCCHHHHHhh
Confidence 86 888999999998888775
No 38
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.72 E-value=2.1e-17 Score=130.68 Aligned_cols=105 Identities=11% Similarity=0.180 Sum_probs=94.1
Q ss_pred CCeEEEeccchhhhhhcCCCeEEEEEECCCChh--Hh--hhhHHHHHHHHHc--CCCCceEEEEEeCCCCCCCCCCCCcC
Q 010824 375 EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGH--CK--KLAPILDEVAVSY--QNDADVVIAKFDATANDIPGDTFEVQ 448 (500)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~--c~--~~~~~~~~~~~~~--~~~~~~~~~~id~~~~~~~~~~~~i~ 448 (500)
..+..|+.++|++.+.+.+..++++|+++||++ |+ .+.|.+.+++..+ .+ ++.|+++|++.+..++++|+|+
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~--~v~~~kVD~d~~~~La~~~~I~ 86 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK--GIGFGLVDSKKDAKVAKKLGLD 86 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC--CCEEEEEeCCCCHHHHHHcCCc
Confidence 358889999999999888999999999999987 99 8889999998887 44 6999999999999999999999
Q ss_pred cceEEEEEcCCCceEEecCCCCHHHHHHHHHhhc
Q 010824 449 GYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 449 ~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
++||+++|.+|. .+.|.|..+.+.|.+||++..
T Consensus 87 ~iPTl~lfk~G~-~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 87 EEDSIYVFKDDE-VIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred cccEEEEEECCE-EEEeeCCCCHHHHHHHHHHHh
Confidence 999999997665 445999999999999998764
No 39
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.3e-17 Score=145.06 Aligned_cols=108 Identities=30% Similarity=0.640 Sum_probs=100.5
Q ss_pred cCceEEcCccChhhhh---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc
Q 010824 30 KEFVLTLDHSNFSDTV---SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 106 (500)
...+.++|+.||+..+ ...+||+|+||+|||++|+.+.|.+++++..++|. +.+++|||+.++. ++.+|||+
T Consensus 22 a~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~--vAaqfgiq 96 (304)
T COG3118 22 APGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM--VAAQFGVQ 96 (304)
T ss_pred cccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh--HHHHhCcC
Confidence 3448999999999998 44559999999999999999999999999999887 9999999999999 99999999
Q ss_pred cccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 107 GFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 107 ~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
++|+++.|.+| ..+.-|.|....+.+.+|+.+..++
T Consensus 97 sIPtV~af~dG-qpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 97 SIPTVYAFKDG-QPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred cCCeEEEeeCC-cCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999999987 7889999999999999999999987
No 40
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=5.8e-17 Score=128.33 Aligned_cols=102 Identities=46% Similarity=0.912 Sum_probs=91.3
Q ss_pred eEEcCccChhhhhcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh-hhhHHHHHhcCcccccE
Q 010824 33 VLTLDHSNFSDTVSK-HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-EANKELASQYEIRGFPT 110 (500)
Q Consensus 33 v~~l~~~~~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-~~~~~~~~~~~i~~~P~ 110 (500)
+.++++++|+..+.+ +++++|+||++||++|+.+.|.|..+++.+.. .+++.++.+||+. .+. +|++++|.++|+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~--~~~~~~i~~~P~ 78 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKD--LAKKYGVSGFPT 78 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchh--hHHhCCCCCcCE
Confidence 567899999999864 45899999999999999999999999999873 2459999999999 777 999999999999
Q ss_pred EEEEecCCceeeecCCCCCHHHHHHHH
Q 010824 111 IKILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
+++|++|+.....|.|.++.+.|.+|+
T Consensus 79 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 79 LKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEEEeCCCCCccccCCccCHHHHHhhC
Confidence 999998877788999999999999885
No 41
>PRK10996 thioredoxin 2; Provisional
Probab=99.72 E-value=8.4e-17 Score=132.98 Aligned_cols=106 Identities=28% Similarity=0.598 Sum_probs=96.0
Q ss_pred cCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccccc
Q 010824 30 KEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFP 109 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P 109 (500)
...+.+++..+|+.+++++++++|+||++||++|+.+.|.+.++++.+.+. +.++.+|++..+. ++++|+|.++|
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~~--l~~~~~V~~~P 108 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAERE--LSARFRIRSIP 108 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCHH--HHHhcCCCccC
Confidence 344677899999999999999999999999999999999999999988654 9999999998887 99999999999
Q ss_pred EEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 110 TIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
++++|++| +.+.++.|..+.+.+.+|+.+.+
T Consensus 109 tlii~~~G-~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 109 TIMIFKNG-QVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEEEECC-EEEEEEcCCCCHHHHHHHHHHhC
Confidence 99999864 88889999999999999998753
No 42
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=5.4e-17 Score=128.23 Aligned_cols=102 Identities=39% Similarity=0.776 Sum_probs=89.8
Q ss_pred ceEEcCccChhhhhc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE
Q 010824 32 FVLTLDHSNFSDTVS-KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~ 110 (500)
.|..|+.++|++.+. .+++++|+||++||++|+.+.|.|.++++.+++ ..++.++.+||+.. . ++..+++.++|+
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~--~~~~~~~~~~Pt 76 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-D--VPSEFVVDGFPT 76 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-h--hhhhccCCCCCE
Confidence 367899999999874 458999999999999999999999999999876 24599999999876 4 888999999999
Q ss_pred EEEEecCC-ceeeecCCCCCHHHHHHHH
Q 010824 111 IKILRNGG-KTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 111 ~~~~~~~~-~~~~~~~g~~~~~~l~~~i 137 (500)
+++|++|+ ....+|.|..+.+.|.+||
T Consensus 77 ~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 77 ILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 99999875 3567899999999999985
No 43
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.71 E-value=2.7e-17 Score=131.11 Aligned_cols=101 Identities=35% Similarity=0.631 Sum_probs=91.5
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC--CCCCCCCCCcCcceEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA--NDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~ 454 (500)
+.+++.++|++.+.+.+++++|+||++||++|+.+.|.+.+++..+++ .+.++.+|++. +..+++++++.++|+++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 678999999999988888999999999999999999999999999875 58899999998 77788889999999999
Q ss_pred EEcCCC-----ceEEecCCCCHHHHHHHHH
Q 010824 455 FRSASG-----KTVPYEGDRTKEDIVDFIE 479 (500)
Q Consensus 455 ~~~~~~-----~~~~~~g~~~~~~l~~~i~ 479 (500)
+|++|+ ....|.|..+.++|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 998886 3568999999999999984
No 44
>PRK09381 trxA thioredoxin; Provisional
Probab=99.71 E-value=8.5e-17 Score=128.01 Aligned_cols=106 Identities=29% Similarity=0.600 Sum_probs=96.3
Q ss_pred CCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEE
Q 010824 375 EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 454 (500)
..+.++++++|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+++ ++.++.+|++.++...++++++++|+++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 35788999999998877789999999999999999999999999999976 6999999999999998889999999999
Q ss_pred EEcCCCceEEecCCCCHHHHHHHHHhhc
Q 010824 455 FRSASGKTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
+|+.|....++.|..+.+.|..||.+++
T Consensus 81 ~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 9987666778999999999999998875
No 45
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.71 E-value=1.5e-16 Score=131.66 Aligned_cols=92 Identities=20% Similarity=0.446 Sum_probs=81.6
Q ss_pred cCceEEcCccChhhhhc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 30 KEFVLTLDHSNFSDTVS--KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
...+..+++++|+..+. ++++++|+||++||++|+.+.|.++++++++.+ .++.|+.|||+..++ ++++|+|..
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~--la~~~~V~~ 102 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPN--VAEKFRVST 102 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHH--HHHHcCcee
Confidence 46788999999999884 356899999999999999999999999999864 249999999999988 999999988
Q ss_pred ------ccEEEEEecCCceeeecCC
Q 010824 108 ------FPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 108 ------~P~~~~~~~~~~~~~~~~g 126 (500)
+||+++|++| +...++.|
T Consensus 103 ~~~v~~~PT~ilf~~G-k~v~r~~G 126 (152)
T cd02962 103 SPLSKQLPTIILFQGG-KEVARRPY 126 (152)
T ss_pred cCCcCCCCEEEEEECC-EEEEEEec
Confidence 9999999975 88888886
No 46
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=1e-16 Score=124.35 Aligned_cols=93 Identities=27% Similarity=0.563 Sum_probs=82.9
Q ss_pred Chhhhhc-c-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecC
Q 010824 40 NFSDTVS-K-HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 40 ~~~~~~~-~-~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
+|++.+. . +++++|+||++||++|+.+.|.+.++++.+.+. +.++.|||+.... ++++|+|.++|++++|++|
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~--l~~~~~i~~~Pt~~~~~~g 76 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQPQ--IAQQFGVQALPTVYLFAAG 76 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCHH--HHHHcCCCCCCEEEEEeCC
Confidence 5676763 3 679999999999999999999999999998754 8999999999888 9999999999999999954
Q ss_pred CceeeecCCCCCHHHHHHHHH
Q 010824 118 GKTIQEYKGPREADGIVEYLK 138 (500)
Q Consensus 118 ~~~~~~~~g~~~~~~l~~~i~ 138 (500)
+...++.|..+.+.|..|+.
T Consensus 77 -~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 77 -QPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred -EEeeeecCCCCHHHHHHHhC
Confidence 77788999999999999873
No 47
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.71 E-value=7.2e-17 Score=126.51 Aligned_cols=100 Identities=31% Similarity=0.557 Sum_probs=88.0
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
.+.+++.++|++.+ .+ .++|.||++||++|+.+.|.|.+++..++. .++.++++|++.++.+++++++.++|++++
T Consensus 2 ~v~~l~~~~f~~~~-~~--~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-EG--EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-CC--CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 47789999999877 32 389999999999999999999999987753 369999999999999998999999999999
Q ss_pred EcCCCceEEecCCCCHHHHHHHHHh
Q 010824 456 RSASGKTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~l~~~i~~ 480 (500)
|++| ++.+|.|..+.++|.+||++
T Consensus 78 ~~~g-~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDG-VFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCC-CEEEecCCCCHHHHHHHHhC
Confidence 9665 46789999999999999974
No 48
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.70 E-value=1.4e-16 Score=125.31 Aligned_cols=97 Identities=43% Similarity=0.907 Sum_probs=84.9
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCC
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGG 118 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~ 118 (500)
++|+.+. ++++++|.||++||++|+.+.|.|+++++.+++.+..+.++.+||+..+. ++++++|.++|++++|+++
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~--~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS--IASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh--HHhhcCCccccEEEEEcCC-
Confidence 5677754 56799999999999999999999999999997655569999999998887 9999999999999999754
Q ss_pred ceeeecCCCCCHHHHHHHHHhh
Q 010824 119 KTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 119 ~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
....|.|..+.+.|.+|+++.
T Consensus 83 -~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 -LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred -CceeecCCCCHHHHHHHHHhh
Confidence 456799999999999999864
No 49
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.69 E-value=1.2e-16 Score=125.80 Aligned_cols=100 Identities=36% Similarity=0.748 Sum_probs=89.3
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCC-CCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
+..+++++|+..+.+ + .++|+||++||++|+.+.|.|.+++..++. ..++.++.+|++.+...++++++.++|++++
T Consensus 2 ~~~l~~~~f~~~~~~-~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE-G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc-C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567899999999843 3 599999999999999999999999999865 3479999999999999999999999999999
Q ss_pred EcCCCceEEecCCCCHHHHHHHH
Q 010824 456 RSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
|++|..+.++.|..+.++|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 98777677899999999999885
No 50
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.69 E-value=1.2e-16 Score=125.94 Aligned_cols=100 Identities=35% Similarity=0.614 Sum_probs=91.5
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR 456 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 456 (500)
+.++++++|.+.+.+.+++++|+||++||++|+.+.|.|.+++..+.+ .+.++.+|++.++.++++++++++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 678899999999977777899999999999999999999999998875 699999999999999999999999999999
Q ss_pred cCC-CceEEecCCCCHHHHHHHH
Q 010824 457 SAS-GKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 457 ~~~-~~~~~~~g~~~~~~l~~~i 478 (500)
++| .....|.|..+.++|.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCCCCCHHHHHHHh
Confidence 877 3467899999999999997
No 51
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.69 E-value=1.3e-16 Score=125.36 Aligned_cols=100 Identities=51% Similarity=0.971 Sum_probs=90.4
Q ss_pred EcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 35 TLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 35 ~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
.+++++|.+.+.++++++|+||++||++|+.+.+.|..+++.++. +..+.++.+||+.+.. ++++|+|+++|++++|
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANND--LCSEYGVRGYPTIKLF 78 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHH--HHHhCCCCCCCEEEEE
Confidence 478889999999998999999999999999999999999999852 2349999999999777 9999999999999999
Q ss_pred ecCCceeeecCCCCCHHHHHHHH
Q 010824 115 RNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
++++....+|.|..+.+.+.+|+
T Consensus 79 ~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 79 PNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred cCCCcccccCCCCcCHHHHHhhC
Confidence 98767788999999999998875
No 52
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.68 E-value=3.3e-16 Score=124.73 Aligned_cols=103 Identities=33% Similarity=0.666 Sum_probs=85.1
Q ss_pred ceEEcCccChhhhhccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE
Q 010824 32 FVLTLDHSNFSDTVSKH-NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~ 110 (500)
.+..+++++|+..++++ ++++|.||++||++|+.+.|.|+++++.+++..+.+.++.+||+.+...++|++|+|+++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999998554 59999999999999999999999999998754445999999998766566999999999999
Q ss_pred EEEEecCCce---eeecCCC-CCHHHHH
Q 010824 111 IKILRNGGKT---IQEYKGP-READGIV 134 (500)
Q Consensus 111 ~~~~~~~~~~---~~~~~g~-~~~~~l~ 134 (500)
+++|+++... ...|+|. +..+++.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 9999987432 2356776 6666553
No 53
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.68 E-value=1.2e-16 Score=124.00 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=76.4
Q ss_pred cChhhhhc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 39 SNFSDTVS--KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 39 ~~~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
++|+..+. .+++++|.||++||++|+.+.|.++++++++.+. +.|+.||++..+. ++++|+|.++||+++|++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~~--la~~~~V~~iPTf~~fk~ 77 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVPD--FNKMYELYDPPTVMFFFR 77 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCHH--HHHHcCCCCCCEEEEEEC
Confidence 45777775 5789999999999999999999999999998765 8999999999988 999999999999999998
Q ss_pred CCceeeecCCCCCHH
Q 010824 117 GGKTIQEYKGPREAD 131 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~ 131 (500)
| +.+.+..|..+..
T Consensus 78 G-~~v~~~~G~~~~~ 91 (114)
T cd02954 78 N-KHMKIDLGTGNNN 91 (114)
T ss_pred C-EEEEEEcCCCCCc
Confidence 6 7778887765443
No 54
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.68 E-value=1.1e-16 Score=125.95 Aligned_cols=102 Identities=47% Similarity=0.857 Sum_probs=92.6
Q ss_pred EeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCC
Q 010824 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSAS 459 (500)
Q Consensus 380 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 459 (500)
|++++|++.+. .++.++|+||++||+.|+.+.+.|.+++..+++..++.++.+|++.+..+++++++.++|++++|+.|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46788898884 78899999999999999999999999999997655799999999999999999999999999999888
Q ss_pred CceEEecCCCCHHHHHHHHHhhc
Q 010824 460 GKTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 460 ~~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
+.+.+|.|..+.++|..||.+++
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhcC
Confidence 87789999999999999998753
No 55
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.68 E-value=3.1e-16 Score=122.64 Aligned_cols=97 Identities=22% Similarity=0.475 Sum_probs=84.7
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
-+.++|+.+++++++++|+||++||++|+.+.|.+..+++.+.+ ..+.|+.+|++ ... ++++|+|+++|++++|+
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~--~~~~~~v~~~Pt~~~~~ 79 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TID--TLKRYRGKCEPTFLFYK 79 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHH--HHHHcCCCcCcEEEEEE
Confidence 36778999999999999999999999999999999999998863 23889999998 555 99999999999999999
Q ss_pred cCCceeeecCCCCCHHHHHHHHHh
Q 010824 116 NGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 116 ~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
+| +...+..|. +.+.+.++|.+
T Consensus 80 ~g-~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 80 NG-ELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred CC-EEEEEEecC-ChHHHHHHHhh
Confidence 75 777888885 88888888865
No 56
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.68 E-value=9.2e-17 Score=127.56 Aligned_cols=101 Identities=20% Similarity=0.306 Sum_probs=88.5
Q ss_pred EEeccchhhhhh--cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEE
Q 010824 379 VLVADSLQDMVF--NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR 456 (500)
Q Consensus 379 ~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 456 (500)
.++.++|.+.+. +.+++++|+||++||++|+.+.|.|.+++..+++. ++.++++|++.++.+++++++.++|++++|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~-~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~ 86 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL-GVGIATVNAGHERRLARKLGAHSVPAIVGI 86 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-CceEEEEeccccHHHHHHcCCccCCEEEEE
Confidence 467788877664 36789999999999999999999999999999642 699999999999999988999999999999
Q ss_pred cCCCceEEecCCCCHHHHHHHHHh
Q 010824 457 SASGKTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 457 ~~~~~~~~~~g~~~~~~l~~~i~~ 480 (500)
+.|..+.++.|..+.+.|.+||++
T Consensus 87 ~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 87 INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ECCEEEEEecCCCCHHHHHHHHhc
Confidence 877656678899999999999976
No 57
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.68 E-value=1.6e-16 Score=123.31 Aligned_cols=95 Identities=27% Similarity=0.508 Sum_probs=84.7
Q ss_pred cchhhhhhcC-CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc
Q 010824 383 DSLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK 461 (500)
Q Consensus 383 ~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 461 (500)
++|++.+.+. +++++|+||++||++|+.+.|.+.+++..+++ .+.++++|++.+..+++++++.++|++++|++|..
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3677777554 78999999999999999999999999999876 59999999999999999999999999999986655
Q ss_pred eEEecCCCCHHHHHHHHH
Q 010824 462 TVPYEGDRTKEDIVDFIE 479 (500)
Q Consensus 462 ~~~~~g~~~~~~l~~~i~ 479 (500)
..++.|..+.++|.+||+
T Consensus 79 ~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred eeeecCCCCHHHHHHHhC
Confidence 668999999999999874
No 58
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.67 E-value=2.8e-16 Score=124.34 Aligned_cols=102 Identities=44% Similarity=0.805 Sum_probs=91.9
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC-CCCCCCCCCcCcceEEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA-NDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~i~~~P~~~~ 455 (500)
+.++++++|+..+.+.++.++|+||++||++|+.+.|.|.+++..++...++.++.+|++. ++..++++++.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678999999988667779999999999999999999999999998754579999999999 899999999999999999
Q ss_pred EcCCC-ceEEecCCCCHHHHHHHH
Q 010824 456 RSASG-KTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 456 ~~~~~-~~~~~~g~~~~~~l~~~i 478 (500)
|+.|+ ....|.|..+.++|.+||
T Consensus 82 ~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCCCccccCCccCHHHHHhhC
Confidence 98774 466899999999999885
No 59
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.67 E-value=9.6e-15 Score=130.70 Aligned_cols=189 Identities=16% Similarity=0.178 Sum_probs=138.9
Q ss_pred CCeEEEEEEC---CCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCcee-ee
Q 010824 48 HNFIVVEFYA---PWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTI-QE 123 (500)
Q Consensus 48 ~~~~lv~f~~---~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~-~~ 123 (500)
+...++.|++ +||++|+.+.|.++++++.+.. -.+.++.+|.+.++. ++++|+|.++||+++|++| +.. .+
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~--l~~~~~V~~~Pt~~~f~~g-~~~~~~ 93 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKE--EAEKYGVERVPTTIILEEG-KDGGIR 93 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHH--HHHHcCCCccCEEEEEeCC-eeeEEE
Confidence 4455777888 9999999999999999998742 124455555556555 9999999999999999986 555 58
Q ss_pred cCCCCCHHHHHHHHHhhcCCC--ccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccc
Q 010824 124 YKGPREADGIVEYLKKQSGPA--SAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKL 201 (500)
Q Consensus 124 ~~g~~~~~~l~~~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~ 201 (500)
+.|....+.+.+||...+.-. ...+ +.
T Consensus 94 ~~G~~~~~~l~~~i~~~~~~~~~~~~L-~~-------------------------------------------------- 122 (215)
T TIGR02187 94 YTGIPAGYEFAALIEDIVRVSQGEPGL-SE-------------------------------------------------- 122 (215)
T ss_pred EeecCCHHHHHHHHHHHHHhcCCCCCC-CH--------------------------------------------------
Confidence 999999999999998764210 0000 00
Q ss_pred cCCCCCCCCCCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCceEE-EEEeCCCC
Q 010824 202 LPRGESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAKAM-LFMNFSSE 280 (500)
Q Consensus 202 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 280 (500)
.+...+-....|+.+ +|+..+|.
T Consensus 123 --------------------------------------------------------~~~~~l~~~~~pv~I~~F~a~~C~ 146 (215)
T TIGR02187 123 --------------------------------------------------------KTVELLQSLDEPVRIEVFVTPTCP 146 (215)
T ss_pred --------------------------------------------------------HHHHHHHhcCCCcEEEEEECCCCC
Confidence 011111122334444 46777899
Q ss_pred CchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCccCCCCCChhhHHHHHHH
Q 010824 281 GTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQKYLKPNLDADQIAPWVKE 354 (500)
Q Consensus 281 ~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~y~~~~~~~~~i~~fi~~ 354 (500)
.|+.....+++++.++ ++ +.+..+|....+++...+|+. ..|++++++. +.. +.|..+.+.+.+|+.+
T Consensus 147 ~C~~~~~~l~~l~~~~-~~-i~~~~vD~~~~~~~~~~~~V~--~vPtl~i~~~-~~~-~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 147 YCPYAVLMAHKFALAN-DK-ILGEMIEANENPDLAEKYGVM--SVPKIVINKG-VEE-FVGAYPEEQFLEYILS 214 (215)
T ss_pred CcHHHHHHHHHHHHhc-Cc-eEEEEEeCCCCHHHHHHhCCc--cCCEEEEecC-CEE-EECCCCHHHHHHHHHh
Confidence 9988888999999885 44 999999999999999999999 8999999753 322 4467788888888764
No 60
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.66 E-value=2.3e-16 Score=139.18 Aligned_cols=110 Identities=28% Similarity=0.534 Sum_probs=96.0
Q ss_pred CCCeEEEeccchhhhhhcC----CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCc
Q 010824 374 NEPVKVLVADSLQDMVFNS----GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQG 449 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~----~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~ 449 (500)
...+.+++.++|++.+... +++++|+||++||++|+.+.|.|+++++.+++ .+.++.+|++.++.++++|+|++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCc
Confidence 3468999999999988543 58999999999999999999999999999976 59999999999999999999999
Q ss_pred ceEEEEEcCCCceEEecCCCCHHHHHHHHHhhcCCC
Q 010824 450 YPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 450 ~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
+|++++|++|.....+.|..+.++|.+|+.+...+.
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 999999986644445557899999999999987554
No 61
>PHA02278 thioredoxin-like protein
Probab=99.66 E-value=1.7e-16 Score=122.72 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=79.7
Q ss_pred ccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC----CCCCCCCCcCcceEEEEEc
Q 010824 382 ADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN----DIPGDTFEVQGYPTVFFRS 457 (500)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~i~~~P~~~~~~ 457 (500)
.++|.+.+ +.+++++|+|||+||++|+.+.|.+.+++..+.. ++.|+++|++.+ +.+.++++|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 45677777 6789999999999999999999999999887544 467899999986 4567789999999999998
Q ss_pred CCCceEEecCCCCHHHHHHH
Q 010824 458 ASGKTVPYEGDRTKEDIVDF 477 (500)
Q Consensus 458 ~~~~~~~~~g~~~~~~l~~~ 477 (500)
+|..+.++.|..+.+.|.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 87778799999999888775
No 62
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.66 E-value=4.8e-16 Score=123.25 Aligned_cols=102 Identities=22% Similarity=0.551 Sum_probs=87.7
Q ss_pred CeEEEeccchhhhhh--cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC-CCCCCC-CCCcCcce
Q 010824 376 PVKVLVADSLQDMVF--NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA-NDIPGD-TFEVQGYP 451 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~-~~~i~~~P 451 (500)
.|.+++.++|+.++. +.+++++|.||++||++|+.+.|.|.+++..+++ .++.++.+|++. +...+. .++++++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 477899999999984 4578999999999999999999999999999974 369999999998 455554 48999999
Q ss_pred EEEEEcCCCc-eEEecCC-CCHHHHHHHH
Q 010824 452 TVFFRSASGK-TVPYEGD-RTKEDIVDFI 478 (500)
Q Consensus 452 ~~~~~~~~~~-~~~~~g~-~~~~~l~~~i 478 (500)
++++|++|+. ...|.|. ++.++|.+||
T Consensus 81 ti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 9999987754 7789995 8999999986
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.66 E-value=7.3e-16 Score=120.69 Aligned_cols=96 Identities=22% Similarity=0.351 Sum_probs=79.3
Q ss_pred ccChhhhhcc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-HHHHHhcCcccccEEEEE
Q 010824 38 HSNFSDTVSK--HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-KELASQYEIRGFPTIKIL 114 (500)
Q Consensus 38 ~~~~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P~~~~~ 114 (500)
.++|++.+.+ +++++|.||++||++|+.+.|.+.++++.+ . ++.|+.||++.+.. .+++++|+|.++||+++|
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEE
Confidence 4567888743 889999999999999999999999999998 3 28999999987641 249999999999999999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHh
Q 010824 115 RNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
++| +.+.++.| .....|.+-+.+
T Consensus 79 ~~G-~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 79 KDG-EKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred eCC-eEEEEEeC-CCHHHHHHHHHh
Confidence 865 78899999 455666666543
No 64
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.66 E-value=1.5e-16 Score=123.58 Aligned_cols=96 Identities=22% Similarity=0.305 Sum_probs=80.1
Q ss_pred ccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC
Q 010824 382 ADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG 460 (500)
Q Consensus 382 ~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 460 (500)
.++|+..+.. .++.++|.|||+||++|+.+.|.+.+++..+.+ .+.|+++|+++++.+.++|+|.++||+++|++|.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 3567777753 578999999999999999999999999999875 5899999999999999999999999999998777
Q ss_pred ceEEecCC----------CCHHHHHHHHH
Q 010824 461 KTVPYEGD----------RTKEDIVDFIE 479 (500)
Q Consensus 461 ~~~~~~g~----------~~~~~l~~~i~ 479 (500)
.+.+..|. .+.+.+++-+.
T Consensus 80 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
T cd02954 80 HMKIDLGTGNNNKINWVFEDKQEFIDIIE 108 (114)
T ss_pred EEEEEcCCCCCceEEEecCcHHHHHHHHH
Confidence 76676653 44555555554
No 65
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.66 E-value=5.2e-16 Score=122.55 Aligned_cols=101 Identities=37% Similarity=0.741 Sum_probs=89.6
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC--CCCCCCCCCcCcceEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA--NDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~i~~~P~~~ 454 (500)
+..++..+|+..+ +.+++++|+||++||++|+++.|.+.+++..++....+.++.+|++. ++..+++++++++|+++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678889999888 55669999999999999999999999999988744479999999998 78888889999999999
Q ss_pred EEcCCCceEEecCCCCHHHHHHHH
Q 010824 455 FRSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
+|++|..+.++.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 998776677999999999999885
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.66 E-value=5.6e-16 Score=122.09 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=83.9
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++|.++++++++++|+||++||++|+.+.+.+ .++++.+.+ .+.++.+|++.+. ..+++++|+|.++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46888999999999999999999999999988 578888765 3999999997632 234999999999999999
Q ss_pred Eec-CCceeeecCCCCCHHHHHHHHH
Q 010824 114 LRN-GGKTIQEYKGPREADGIVEYLK 138 (500)
Q Consensus 114 ~~~-~~~~~~~~~g~~~~~~l~~~i~ 138 (500)
|++ +|+.+.++.|..+.+.|.+++.
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 996 5688899999999999998873
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.65 E-value=4.7e-16 Score=120.64 Aligned_cols=90 Identities=20% Similarity=0.465 Sum_probs=79.1
Q ss_pred hhhhhh-cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC-CCCCCCCCCCcCcceEEEEEcCCCce
Q 010824 385 LQDMVF-NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT-ANDIPGDTFEVQGYPTVFFRSASGKT 462 (500)
Q Consensus 385 ~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~~~~~i~~~P~~~~~~~~~~~ 462 (500)
+.+++. ..++.++|.||++||++|+.+.|.|+++++.+++ +.++.+|.+ .++.++++|++.++||+++|++| .+
T Consensus 9 ~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 9 ALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred HHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 334443 4688999999999999999999999999999863 788999998 78888888999999999999877 77
Q ss_pred EEecCCCCHHHHHHHH
Q 010824 463 VPYEGDRTKEDIVDFI 478 (500)
Q Consensus 463 ~~~~g~~~~~~l~~~i 478 (500)
.+|.|..+.++|.+||
T Consensus 85 ~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGTRTLDSLAAFY 100 (100)
T ss_pred eEecCCCCHHHHHhhC
Confidence 8999999999999985
No 68
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.65 E-value=1.8e-15 Score=125.28 Aligned_cols=103 Identities=19% Similarity=0.374 Sum_probs=88.5
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
+...|+.++.++++++|+||++||++|+.+.|.+.++++.+.+. +.|+.||++.....+++++|+|.++|++++|+.
T Consensus 9 ~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~ 85 (142)
T cd02950 9 SSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDR 85 (142)
T ss_pred ccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECC
Confidence 34568888899999999999999999999999999999998654 667777776554334999999999999999986
Q ss_pred CCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 117 GGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+|+...++.|....+.|.+++.+.+.
T Consensus 86 ~G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 86 EGNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 67888999999999999999988773
No 69
>PRK10996 thioredoxin 2; Provisional
Probab=99.65 E-value=7.5e-16 Score=127.31 Aligned_cols=105 Identities=22% Similarity=0.482 Sum_probs=94.1
Q ss_pred CCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEE
Q 010824 375 EPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 454 (500)
+.+..++.++|+..+ +.++.++|+||++||++|+.+.|.|.+++..++. ++.++++|++.++.+.+++++.++|+++
T Consensus 35 ~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptli 111 (139)
T PRK10996 35 GEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTIM 111 (139)
T ss_pred CCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEEE
Confidence 446678999999877 6689999999999999999999999999998875 6999999999999999999999999999
Q ss_pred EEcCCCceEEecCCCCHHHHHHHHHhhc
Q 010824 455 FRSASGKTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
+|++|+.+.++.|..+.+.|.+||++++
T Consensus 112 i~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 112 IFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9986666778899999999999998753
No 70
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.8e-16 Score=137.77 Aligned_cols=107 Identities=26% Similarity=0.567 Sum_probs=99.9
Q ss_pred CeEEEeccchhhhhhc--CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEE
Q 010824 376 PVKVLVADSLQDMVFN--SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 453 (500)
.|.++|..+|...+.. ..++|+|+||+|||++|+.+.|.+++++..+++ .+++++|||+..+.+..+|+|+++|++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 3999999999999953 466999999999999999999999999999988 799999999999999999999999999
Q ss_pred EEEcCCCceEEecCCCCHHHHHHHHHhhcCC
Q 010824 454 FFRSASGKTVPYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 454 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 484 (500)
+.|..|+-+..|.|...++.|..||.++...
T Consensus 102 ~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 9998887788999999999999999999877
No 71
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.64 E-value=1.4e-15 Score=117.24 Aligned_cols=96 Identities=17% Similarity=0.206 Sum_probs=88.1
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPW--CGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT 110 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~--c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~ 110 (500)
.-.++..||+..+..+.+++|.||++| |++|..+.|.+.++++++.+. +.|+.||++.++. ++.+|+|+++||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~~--la~~f~V~sIPT 86 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQA--LAARFGVLRTPA 86 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCHH--HHHHcCCCcCCE
Confidence 446899999999988899999999997 999999999999999999765 8999999999987 999999999999
Q ss_pred EEEEecCCceeeecCCCCCHHHHH
Q 010824 111 IKILRNGGKTIQEYKGPREADGIV 134 (500)
Q Consensus 111 ~~~~~~~~~~~~~~~g~~~~~~l~ 134 (500)
+++|++| +.+.++.|..+.+++.
T Consensus 87 li~fkdG-k~v~~~~G~~~~~e~~ 109 (111)
T cd02965 87 LLFFRDG-RYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEEECC-EEEEEEeCccCHHHHh
Confidence 9999986 8888999998888775
No 72
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.64 E-value=1.1e-15 Score=148.30 Aligned_cols=109 Identities=21% Similarity=0.478 Sum_probs=93.9
Q ss_pred ccCceEEcCccChhhhhc---cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCc
Q 010824 29 SKEFVLTLDHSNFSDTVS---KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEI 105 (500)
Q Consensus 29 ~~~~v~~l~~~~~~~~~~---~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i 105 (500)
....|..|++.||+..++ .++++||.||++||++|+.+.|.|+++++++++.+ +.|+.|||+.+.....+++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCccHHHHHHcCC
Confidence 345789999999999985 88899999999999999999999999999997543 8899999987643224578999
Q ss_pred ccccEEEEEecCCceeeecC-CCCCHHHHHHHHHh
Q 010824 106 RGFPTIKILRNGGKTIQEYK-GPREADGIVEYLKK 139 (500)
Q Consensus 106 ~~~P~~~~~~~~~~~~~~~~-g~~~~~~l~~~i~~ 139 (500)
.++||+++|++|......|. |.++.+.|..||+.
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999999998865667898 58999999999975
No 73
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.64 E-value=1.9e-15 Score=118.66 Aligned_cols=100 Identities=32% Similarity=0.704 Sum_probs=87.9
Q ss_pred cCccChhhhhcc-CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 36 LDHSNFSDTVSK-HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 36 l~~~~~~~~~~~-~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
++.++|...+++ +++++|+||++||++|+.+.+.+.++++.+.+. +.|+.+|++..+. ++++|+|.++|++++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~~--~~~~~~v~~~P~~~~~ 75 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENPD--IAAKYGIRSIPTLLLF 75 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCHH--HHHHcCCCcCCEEEEE
Confidence 356678888765 459999999999999999999999999888654 9999999999888 9999999999999999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 115 RNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
++| +....+.|..+.+.+.+|+.+.+
T Consensus 76 ~~g-~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 76 KNG-KEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred eCC-cEeeeecCCCCHHHHHHHHHhhC
Confidence 865 67788999999999999998753
No 74
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=6.1e-15 Score=141.04 Aligned_cols=221 Identities=21% Similarity=0.346 Sum_probs=151.7
Q ss_pred cCceEEcCccChhhhhccCC-eEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccc
Q 010824 30 KEFVLTLDHSNFSDTVSKHN-FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~~~~~-~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 108 (500)
.+.|..|+..+|..++...+ ..+|.||++||+||.++.|.|+++++.+..=.+-+.+++|||..+....+|+.|+|++|
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 47899999999999995554 88999999999999999999999999998766779999999999998889999999999
Q ss_pred cEEEEEecCCce---eeecCCCCCHHHHHHHHHhhc-----------CC---CccccCChhhHhhhhccCC-eEEEEEec
Q 010824 109 PTIKILRNGGKT---IQEYKGPREADGIVEYLKKQS-----------GP---ASAEIKSAEDASSFIGEKK-VVIIGVFP 170 (500)
Q Consensus 109 P~~~~~~~~~~~---~~~~~g~~~~~~l~~~i~~~~-----------~~---~~~~i~~~~~~~~~~~~~~-~~~i~~~~ 170 (500)
|++.+|..+... ...+.|.....++.+.+.+.+ .| ++.+-++.+++.+...+.. .+.|++-.
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~ 197 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFET 197 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEec
Confidence 999999876222 245566666666666665433 34 3455566777776665544 33333323
Q ss_pred CCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCC-CeEEEeccCCCcccccCCCCH----HHHHHHHHH---c
Q 010824 171 NFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTG-PVVRLFKPFDELFVDFKDFKV----DALEKFVEE---S 242 (500)
Q Consensus 171 ~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~----~~l~~~i~~---~ 242 (500)
....-....+.. ......+....+.+.+.....+++... |..+++|......+.....+. +.|..+|-. .
T Consensus 198 ~~s~lg~~~~l~--~l~~~~v~vr~~~d~q~~~~~~l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a 275 (606)
T KOG1731|consen 198 EPSDLGWANLLN--DLPSKQVGVRARLDTQNFPLFGLKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEA 275 (606)
T ss_pred CCcccHHHHHHh--hccCCCcceEEEecchhccccccCCCCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCcccc
Confidence 222222222111 112345666667777777774444444 788888887776643333333 777777743 3
Q ss_pred cCCcEEEeCC
Q 010824 243 SIPIVTVFNS 252 (500)
Q Consensus 243 ~~p~~~~~~~ 252 (500)
+.|.+...+.
T Consensus 276 ~~pt~~p~~~ 285 (606)
T KOG1731|consen 276 SGPTLHPITA 285 (606)
T ss_pred CCCCcCcccc
Confidence 4466655554
No 75
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.62 E-value=1.8e-15 Score=118.73 Aligned_cols=100 Identities=28% Similarity=0.564 Sum_probs=89.1
Q ss_pred eccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC
Q 010824 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG 460 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 460 (500)
+.++|...+.+.++.++|+||++||++|+.+.+.+.+++..+++ ++.|+.+|++.++..++++++.++|++++|+.|+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc
Confidence 56778888866678999999999999999999999999988875 6999999999999988899999999999997776
Q ss_pred ceEEecCCCCHHHHHHHHHhhc
Q 010824 461 KTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 461 ~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
....+.|..+.+.+.+||++++
T Consensus 80 ~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 80 EVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred EeeeecCCCCHHHHHHHHHhhC
Confidence 6668889999999999998753
No 76
>PLN02309 5'-adenylylsulfate reductase
Probab=99.62 E-value=2.7e-15 Score=145.73 Aligned_cols=107 Identities=23% Similarity=0.551 Sum_probs=94.1
Q ss_pred cCceEEcCccChhhhh---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecC-hhhhHHHHH-hcC
Q 010824 30 KEFVLTLDHSNFSDTV---SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN-EEANKELAS-QYE 104 (500)
Q Consensus 30 ~~~v~~l~~~~~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~-~~~ 104 (500)
...|..|+.++|+.++ +.++++||+||++||++|+.+.|.|+++++.+.+. .+.|+.+||+ .+.. +|. +|+
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--~V~f~kVD~d~~~~~--la~~~~~ 419 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--GVKVAKFRADGDQKE--FAKQELQ 419 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--CeEEEEEECCCcchH--HHHhhCC
Confidence 3468899999999987 57889999999999999999999999999999754 3999999999 6555 886 599
Q ss_pred cccccEEEEEecCCceeeecCC-CCCHHHHHHHHHhh
Q 010824 105 IRGFPTIKILRNGGKTIQEYKG-PREADGIVEYLKKQ 140 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g-~~~~~~l~~~i~~~ 140 (500)
|+++||+++|++|......|.| .++.+.|.+||+..
T Consensus 420 I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 LGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred CceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999999988667788985 69999999999864
No 77
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.62 E-value=2.1e-15 Score=117.96 Aligned_cols=96 Identities=14% Similarity=0.289 Sum_probs=82.8
Q ss_pred eccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC
Q 010824 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG 460 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 460 (500)
+.++|+..+ +.+++++|+||++||++|+.+.|.+.+++..+++ ..+.|+.+|++ +....++|+++++|++++|.+|.
T Consensus 6 ~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 6 NQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred CHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCE
Confidence 677888877 6788999999999999999999999999998864 25889999999 66677889999999999998766
Q ss_pred ceEEecCCCCHHHHHHHHHh
Q 010824 461 KTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 461 ~~~~~~g~~~~~~l~~~i~~ 480 (500)
.+.+..| .+.+.+.++|.+
T Consensus 83 ~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEec-CChHHHHHHHhh
Confidence 6777778 588999999875
No 78
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=4.3e-15 Score=118.54 Aligned_cols=88 Identities=27% Similarity=0.460 Sum_probs=78.2
Q ss_pred ceEEcCccChhhhhccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccc
Q 010824 32 FVLTLDHSNFSDTVSKH---NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 108 (500)
.+..+++++|...+.+. ++++|+||++||++|+.+.|.++++++++.+ +.|+.||++.. . ++++++|.++
T Consensus 5 ~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~--l~~~~~i~~~ 77 (113)
T cd02957 5 EVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-F--LVNYLDIKVL 77 (113)
T ss_pred eEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-H--HHHhcCCCcC
Confidence 46778889999998655 8999999999999999999999999999753 88999999987 6 9999999999
Q ss_pred cEEEEEecCCceeeecCCC
Q 010824 109 PTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 109 P~~~~~~~~~~~~~~~~g~ 127 (500)
|++++|++| +.+.++.|.
T Consensus 78 Pt~~~f~~G-~~v~~~~G~ 95 (113)
T cd02957 78 PTLLVYKNG-ELIDNIVGF 95 (113)
T ss_pred CEEEEEECC-EEEEEEecH
Confidence 999999986 777888773
No 79
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.59 E-value=1e-14 Score=115.80 Aligned_cols=88 Identities=25% Similarity=0.392 Sum_probs=77.9
Q ss_pred eEEcCc-cChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 33 VLTLDH-SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 33 v~~l~~-~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
+..+++ ++|...+.++++++|+||++||++|+.+.|.++++++++.+ +.|+.||++..+. ++++|+|..+|++
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~--l~~~~~v~~vPt~ 79 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPF--LVEKLNIKVLPTV 79 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHH--HHHHCCCccCCEE
Confidence 455666 89999999999999999999999999999999999998743 8999999999888 9999999999999
Q ss_pred EEEecCCceeeecCCC
Q 010824 112 KILRNGGKTIQEYKGP 127 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~ 127 (500)
++|++| +.+.++.|.
T Consensus 80 l~fk~G-~~v~~~~g~ 94 (113)
T cd02989 80 ILFKNG-KTVDRIVGF 94 (113)
T ss_pred EEEECC-EEEEEEECc
Confidence 999986 777666553
No 80
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.59 E-value=4.4e-15 Score=116.24 Aligned_cols=95 Identities=20% Similarity=0.293 Sum_probs=79.2
Q ss_pred ccchhhhhhcC-CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC---CCCCCCCcCcceEEEEEc
Q 010824 382 ADSLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND---IPGDTFEVQGYPTVFFRS 457 (500)
Q Consensus 382 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~i~~~P~~~~~~ 457 (500)
.++|++.+.+. ++.++|.||++||++|+.+.|.+.+++..++ ++.|+++|++.++ .++++++++++||+++|.
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46777887543 8899999999999999999999999999983 5899999999875 566779999999999997
Q ss_pred CCCceEEecCCCCHHHHHHHHHh
Q 010824 458 ASGKTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 458 ~~~~~~~~~g~~~~~~l~~~i~~ 480 (500)
+|..+.++.| ...++|.+-+..
T Consensus 80 ~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 80 DGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred CCeEEEEEeC-CCHHHHHHHHHh
Confidence 7766778888 556777766643
No 81
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.59 E-value=8.4e-15 Score=115.24 Aligned_cols=96 Identities=42% Similarity=0.781 Sum_probs=83.1
Q ss_pred cchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCC-CCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc
Q 010824 383 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK 461 (500)
Q Consensus 383 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 461 (500)
++|+.. ..++.++|.||++||++|+.+.|.|.+++..++. ..++.++.+|++.++..++++++.++|++++|. |+.
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~-~~~ 83 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLK-GDL 83 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEc-CCC
Confidence 566653 3467999999999999999999999999998854 236999999999998998889999999999995 456
Q ss_pred eEEecCCCCHHHHHHHHHhh
Q 010824 462 TVPYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 462 ~~~~~g~~~~~~l~~~i~~~ 481 (500)
..++.|..+.++|.+|+++.
T Consensus 84 ~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 84 AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ceeecCCCCHHHHHHHHHhh
Confidence 67899999999999999864
No 82
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.58 E-value=7.2e-15 Score=117.28 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=84.5
Q ss_pred CCeEEEeccchhhhhhcC--CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceE
Q 010824 375 EPVKVLVADSLQDMVFNS--GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT 452 (500)
Q Consensus 375 ~~~~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~ 452 (500)
+.+..++.++|.+.+.+. ++.++|+||++||++|+.+.|.+++++..+. ++.|+++|++++ .+++++++.++|+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~---~v~f~~vd~~~~-~l~~~~~i~~~Pt 79 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP---ETKFVKINAEKA-FLVNYLDIKVLPT 79 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC---CcEEEEEEchhh-HHHHhcCCCcCCE
Confidence 457889999999999655 3899999999999999999999999999986 489999999998 8888899999999
Q ss_pred EEEEcCCCceEEecCC-------CCHHHHHHHH
Q 010824 453 VFFRSASGKTVPYEGD-------RTKEDIVDFI 478 (500)
Q Consensus 453 ~~~~~~~~~~~~~~g~-------~~~~~l~~~i 478 (500)
+++|.+|+.+.++.|. .+.+.|.+++
T Consensus 80 ~~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l 112 (113)
T cd02957 80 LLVYKNGELIDNIVGFEELGGDDFTTEDLEKFL 112 (113)
T ss_pred EEEEECCEEEEEEecHHHhCCCCCCHHHHHHHh
Confidence 9999887767677652 4455555554
No 83
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.58 E-value=3.4e-15 Score=116.41 Aligned_cols=98 Identities=20% Similarity=0.382 Sum_probs=82.6
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEEC--CCCh---hHhhhhHHHHHHHHHcCCCCceEEEEEeC-----CCCCCCCCCCC
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYA--PWCG---HCKKLAPILDEVAVSYQNDADVVIAKFDA-----TANDIPGDTFE 446 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~--~~c~---~c~~~~~~~~~~~~~~~~~~~~~~~~id~-----~~~~~~~~~~~ 446 (500)
+..|+..+|++.+ ..++.++|.||+ |||+ +|+.+.|.+.+.+. .+.++.||| ..+..++++|+
T Consensus 3 ~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y~ 75 (116)
T cd03007 3 CVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERYK 75 (116)
T ss_pred eeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHhC
Confidence 6789999999988 777889999999 8888 66666665555442 499999999 45677889999
Q ss_pred cC--cceEEEEEcCCC--ceEEecCC-CCHHHHHHHHHhh
Q 010824 447 VQ--GYPTVFFRSASG--KTVPYEGD-RTKEDIVDFIENN 481 (500)
Q Consensus 447 i~--~~P~~~~~~~~~--~~~~~~g~-~~~~~l~~~i~~~ 481 (500)
|+ ++||+++|..|. .+..|.|. ++.+.|.+||+++
T Consensus 76 I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 LDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 99 999999998774 47799997 9999999999976
No 84
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.58 E-value=4.5e-15 Score=116.45 Aligned_cols=99 Identities=45% Similarity=0.835 Sum_probs=87.4
Q ss_pred EEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcC
Q 010824 379 VLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSA 458 (500)
Q Consensus 379 ~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~ 458 (500)
.++.++|.+.+ .+++.++|+||++||++|+.+.+.|.+++..+++..++.|+.+|++.+..++++++++++|++++|++
T Consensus 2 ~l~~~~~~~~i-~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELV-KDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHH-hCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 46778899888 44459999999999999999999999999998533479999999999999999999999999999987
Q ss_pred C-CceEEecCCCCHHHHHHHH
Q 010824 459 S-GKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 459 ~-~~~~~~~g~~~~~~l~~~i 478 (500)
+ ....+|.|..+.+++.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 7 5577899999999999885
No 85
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.58 E-value=8.6e-15 Score=121.26 Aligned_cols=103 Identities=20% Similarity=0.420 Sum_probs=86.8
Q ss_pred CCCeEEEeccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCc---
Q 010824 374 NEPVKVLVADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQG--- 449 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~--- 449 (500)
...+.+++.++|++.+.. .++.++|+||++||++|+.+.|.+++++..+++ .++.|++||+++++.+++++++++
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 356889999999998854 467999999999999999999999999999864 269999999999999998899988
Q ss_pred ---ceEEEEEcCCCceEEecC-----------CCCHHHHHHH
Q 010824 450 ---YPTVFFRSASGKTVPYEG-----------DRTKEDIVDF 477 (500)
Q Consensus 450 ---~P~~~~~~~~~~~~~~~g-----------~~~~~~l~~~ 477 (500)
+||+++|++|+.+.++.| ..+.+++++-
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~ 147 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRH 147 (152)
T ss_pred cCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHh
Confidence 999999987777777774 3556666554
No 86
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.57 E-value=6.2e-15 Score=113.63 Aligned_cols=96 Identities=17% Similarity=0.178 Sum_probs=87.4
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCC--ChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPW--CGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~--c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 454 (500)
...++..+|++.+ ..+.+++|.||++| |+.|+.+.|.|.+++..+.+ .+.|+++|++.++.+..+|+|+++||++
T Consensus 12 ~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5678999999888 77889999999997 99999999999999999976 5899999999999999999999999999
Q ss_pred EEcCCCceEEecCCCCHHHHH
Q 010824 455 FRSASGKTVPYEGDRTKEDIV 475 (500)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~l~ 475 (500)
+|++|+.+.++.|..+.+++.
T Consensus 89 ~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 89 FFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEECCEEEEEEeCccCHHHHh
Confidence 998877777899988888765
No 87
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.57 E-value=2.8e-14 Score=110.63 Aligned_cols=87 Identities=24% Similarity=0.540 Sum_probs=79.5
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecC
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYK 125 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~ 125 (500)
+.+++++++||++||++|+.+.|.+.++++++.+. +.+..+|++.++. ++++++|.++|++++|++ |+...++.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~~--l~~~~~v~~vPt~~i~~~-g~~v~~~~ 84 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQE--IAEAAGIMGTPTVQFFKD-KELVKEIS 84 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCHH--HHHHCCCeeccEEEEEEC-CeEEEEEe
Confidence 67889999999999999999999999999998653 9999999998887 999999999999999986 48889999
Q ss_pred CCCCHHHHHHHHH
Q 010824 126 GPREADGIVEYLK 138 (500)
Q Consensus 126 g~~~~~~l~~~i~ 138 (500)
|..+.+.+.+|++
T Consensus 85 g~~~~~~~~~~l~ 97 (97)
T cd02949 85 GVKMKSEYREFIE 97 (97)
T ss_pred CCccHHHHHHhhC
Confidence 9999999988873
No 88
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.57 E-value=1.9e-14 Score=111.88 Aligned_cols=93 Identities=24% Similarity=0.594 Sum_probs=79.0
Q ss_pred ccChhhhhccC--CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 38 HSNFSDTVSKH--NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 38 ~~~~~~~~~~~--~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
.++|++++... ++++|.||++||++|+.+.+.++++++.+.. .+.++.+|++..+. ++++|+|.++|++++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~~~--~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEELPE--ISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccCHH--HHHhcCCccccEEEEEE
Confidence 45688888666 9999999999999999999999999999733 49999999998877 99999999999999998
Q ss_pred cCCceeeecCCCCCHHHHHHHH
Q 010824 116 NGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 116 ~~~~~~~~~~g~~~~~~l~~~i 137 (500)
+| +...++.|. ..+.|.+.|
T Consensus 77 ~g-~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 77 NG-TIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred CC-EEEEEEeCC-CHHHHHHhh
Confidence 65 777888884 556666554
No 89
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.1e-14 Score=112.58 Aligned_cols=86 Identities=30% Similarity=0.589 Sum_probs=75.3
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCC
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 470 (500)
.+++.++|+|||+||++|+.+.|.+.+++.++.+ +.|+++|++++...++.+++..+||+++|.+|.+..++.|. +
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~ 94 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA-N 94 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC-C
Confidence 4468999999999999999999999999999875 99999999998888888999999999999888778888884 4
Q ss_pred HHHHHHHHHh
Q 010824 471 KEDIVDFIEN 480 (500)
Q Consensus 471 ~~~l~~~i~~ 480 (500)
.+.+.+.|.+
T Consensus 95 ~~~l~~~i~~ 104 (106)
T KOG0907|consen 95 KAELEKKIAK 104 (106)
T ss_pred HHHHHHHHHh
Confidence 4477776654
No 90
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.57 E-value=1.3e-14 Score=115.19 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=84.7
Q ss_pred CCeEEEec-cchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEE
Q 010824 375 EPVKVLVA-DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453 (500)
Q Consensus 375 ~~~~~l~~-~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 453 (500)
+.+..++. ++|.+.+ ..++.++|+||++||++|+.+.|.+.+++..+. ++.|+++|++++..+.+++++.++|++
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~---~i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL---ETKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC---CCEEEEEEcccCHHHHHHCCCccCCEE
Confidence 44677777 8898888 557899999999999999999999999998875 489999999999999999999999999
Q ss_pred EEEcCCCceEEecC--------CCCHHHHHHHH
Q 010824 454 FFRSASGKTVPYEG--------DRTKEDIVDFI 478 (500)
Q Consensus 454 ~~~~~~~~~~~~~g--------~~~~~~l~~~i 478 (500)
++|.+|..+.++.| ..+.+++.+||
T Consensus 80 l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~ 112 (113)
T cd02989 80 ILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL 112 (113)
T ss_pred EEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence 99987766656543 35667777765
No 91
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.56 E-value=1.5e-14 Score=115.19 Aligned_cols=101 Identities=34% Similarity=0.570 Sum_probs=84.0
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC-CceEEEEEeCCC--CCCCCCCCCcCcceE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADVVIAKFDATA--NDIPGDTFEVQGYPT 452 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~id~~~--~~~~~~~~~i~~~P~ 452 (500)
++.+++.++|++.+.+.+++++|.||++||++|+.+.|.|++++..+++. ..+.|+.+|++. +...+++++++++|+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 47889999999999877889999999999999999999999999988542 359999999864 566788899999999
Q ss_pred EEEEcCCCc----eEEecCC-CCHHHHHH
Q 010824 453 VFFRSASGK----TVPYEGD-RTKEDIVD 476 (500)
Q Consensus 453 ~~~~~~~~~----~~~~~g~-~~~~~l~~ 476 (500)
+++|++|.+ ...|+|+ +..+++..
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 999987764 2356676 66666644
No 92
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.56 E-value=2.9e-12 Score=129.88 Aligned_cols=308 Identities=15% Similarity=0.226 Sum_probs=221.7
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCCc---hhHHHHHHHHHHhcC---CceEEEee---cccccCCCCCCCCC-CeE
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFSG---EEFENYTALAEKLRS---DYEFGHTQ---NAKLLPRGESSVTG-PVV 214 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~f~~~a~~~~~---~~~f~~~~---~~~~~~~~~~~~~~-p~~ 214 (500)
+..+ +.+.+++.+++++.+++.|+.+++. ...+.+.++|+.+.. .+.|+.+. +.+++.+ +++.. |++
T Consensus 3 v~~l-~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~--~~i~~~Pt~ 79 (462)
T TIGR01130 3 VLVL-TKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQK--YGVSGYPTL 79 (462)
T ss_pred ceEC-CHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHh--CCCccccEE
Confidence 3455 6778888888888888888877764 445688888887754 37888776 4466777 78876 999
Q ss_pred EEeccCCC-cccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHH
Q 010824 215 RLFKPFDE-LFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVA 293 (500)
Q Consensus 215 ~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va 293 (500)
++|+.... ...+.|..+.+.|.+|+.....|.+..++.. ..+..+.......+++|+.. . .......+.++|
T Consensus 80 ~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~----~~~~~~~~~~~~~vi~~~~~-~--~~~~~~~~~~~a 152 (462)
T TIGR01130 80 KIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETV----ADLEAFLADDDVVVIGFFKD-L--DSELNDTFLSVA 152 (462)
T ss_pred EEEeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCH----HHHHHHHhcCCcEEEEEECC-C--CcHHHHHHHHHH
Confidence 99997655 3478999999999999999998888888752 56666777766666666652 2 247788999999
Q ss_pred HhhcCceeE-EEEEcccchhhHHhhcCCCCCCCceEEEEeCCC--Cc-c-CCCC--CChhhHHHHHHHHhcCCCCCcccc
Q 010824 294 EQYKGQGIS-FLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG--QK-Y-LKPN--LDADQIAPWVKEYKEGKVPPFRKS 366 (500)
Q Consensus 294 ~~~~~~~~~-f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~--~~-y-~~~~--~~~~~i~~fi~~~~~G~l~~~~~s 366 (500)
..+.+. .. |+.... ......++.. .|.++++.... .. + +.+. .+.+.|.+||....
T Consensus 153 ~~~~~~-~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~---------- 215 (462)
T TIGR01130 153 EKLRDV-YFFFAHSSD---VAAFAKLGAF---PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAES---------- 215 (462)
T ss_pred HHhhhc-cceEEecCC---HHHHhhcCCC---CCcEEEecccccccccccccCcccCCHHHHHHHHHHcC----------
Confidence 999987 44 333222 2344555543 35566665543 22 2 4444 46689999998833
Q ss_pred CCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCC
Q 010824 367 EPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE 446 (500)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~ 446 (500)
...+.+++..++..........+++.+.......|+.+...+..++..+++ ..+.|+.+|+......++.++
T Consensus 216 -------~p~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~i~f~~~d~~~~~~~~~~~~ 287 (462)
T TIGR01130 216 -------LPLVGEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRG-KFVNFAVADEEDFGRELEYFG 287 (462)
T ss_pred -------CCceEeeCCcchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHHHHHCCC-CeEEEEEecHHHhHHHHHHcC
Confidence 234788899989888843322233333344666789999999999999975 369999999998877877788
Q ss_pred cC--cceEEEEEcCCC-ceEEecC-CCCHHHHHHHHHhhcCCCCC
Q 010824 447 VQ--GYPTVFFRSASG-KTVPYEG-DRTKEDIVDFIENNRDKAAP 487 (500)
Q Consensus 447 i~--~~P~~~~~~~~~-~~~~~~g-~~~~~~l~~~i~~~~~~~~~ 487 (500)
+. .+|+++++..++ ....+.+ ..+.+.|.+||++..++..+
T Consensus 288 ~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~ 332 (462)
T TIGR01130 288 LKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLK 332 (462)
T ss_pred CCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCC
Confidence 77 699999997665 3334544 78999999999998876543
No 93
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.55 E-value=3.3e-14 Score=115.01 Aligned_cols=100 Identities=16% Similarity=0.301 Sum_probs=83.3
Q ss_pred CccChhhhh--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEE-E
Q 010824 37 DHSNFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK-I 113 (500)
Q Consensus 37 ~~~~~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~-~ 113 (500)
+..+|++.+ .++++++|.||++||++|+.+.|.+.++++++.+. +.|+.||++..++ ++++|+|++.|+++ |
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~d--la~~y~I~~~~t~~~f 84 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVPD--FNTMYELYDPCTVMFF 84 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCHH--HHHHcCccCCCcEEEE
Confidence 345788887 46789999999999999999999999999998765 8899999999888 99999999777666 8
Q ss_pred EecCCceeeecCC--------CCCHHHHHHHHHhhc
Q 010824 114 LRNGGKTIQEYKG--------PREADGIVEYLKKQS 141 (500)
Q Consensus 114 ~~~~~~~~~~~~g--------~~~~~~l~~~i~~~~ 141 (500)
|++|...+.+..| ..+.++|.+-++...
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 8876337788888 466777777766544
No 94
>PTZ00102 disulphide isomerase; Provisional
Probab=99.55 E-value=6.9e-12 Score=127.48 Aligned_cols=293 Identities=16% Similarity=0.234 Sum_probs=209.8
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCCch---hHHHHHHHHHHhc---CCceEEEee---cccccCCCCCCCCC-CeE
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFSGE---EFENYTALAEKLR---SDYEFGHTQ---NAKLLPRGESSVTG-PVV 214 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~f~~~a~~~~---~~~~f~~~~---~~~~~~~~~~~~~~-p~~ 214 (500)
+..+ +.+.+++.+++++.+++.|+.+++.. ..+.|.++|..+. .++.|+.+. +.+++.+ +++.. |++
T Consensus 34 v~~l-~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~--~~i~~~Pt~ 110 (477)
T PTZ00102 34 VTVL-TDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQE--FGVRGYPTI 110 (477)
T ss_pred cEEc-chhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHh--cCCCcccEE
Confidence 4555 66788888888888888888887754 4466888887764 357888765 5677777 88876 999
Q ss_pred EEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHHH
Q 010824 215 RLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAE 294 (500)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va~ 294 (500)
++|+..... .|.|..+.+.|..|+.....|.+..++.. .-..........+++....+. .....+.+.++|.
T Consensus 111 ~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~~~~i~~~-----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~~~a~ 182 (477)
T PTZ00102 111 KFFNKGNPV-NYSGGRTADGIVSWIKKLTGPAVTEVESA-----SEIKLIAKKIFVAFYGEYTSK--DSELYKKFEEVAD 182 (477)
T ss_pred EEEECCceE-EecCCCCHHHHHHHHHHhhCCCceeecCH-----HHHHHhhccCcEEEEEEeccC--CcHHHHHHHHHHH
Confidence 999986543 78999999999999999999999999883 322333333333333222122 2477888999999
Q ss_pred hhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC-CccCCCCCChhhHHHHHHHHhcCCCCCccccCCCCCCC
Q 010824 295 QYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG-QKYLKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEEN 373 (500)
Q Consensus 295 ~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~-~~y~~~~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~ 373 (500)
++++. ..|...... ..|.+.+++... ...+.+..+.+.|.+||... .
T Consensus 183 ~~~~~-~~F~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~fI~~~-----------------~ 230 (477)
T PTZ00102 183 KHREH-AKFFVKKHE--------------GKNKIYVLHKDEEGVELFMGKTKEELEEFVSTE-----------------S 230 (477)
T ss_pred hcccc-ceEEEEcCC--------------CCCcEEEEecCCCCcccCCCCCHHHHHHHHHHc-----------------C
Confidence 99887 777654321 345667776655 22233446899999999862 1
Q ss_pred CCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-CCCCCCcCcceE
Q 010824 374 NEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-PGDTFEVQGYPT 452 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~~P~ 452 (500)
...+.+++.+++.... +.+..++++++ .|.....+.+.+.++++.+++ ++.|+.+|++.... ..+.+++..+|+
T Consensus 231 ~P~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~A~~~~~--~~~f~~vd~~~~~~~~~~~~gi~~~P~ 305 (477)
T PTZ00102 231 FPLFAEINAENYRRYI-SSGKDLVWFCG--TTEDYDKYKSVVRKVARKLRE--KYAFVWLDTEQFGSHAKEHLLIEEFPG 305 (477)
T ss_pred CCceeecCccchHHHh-cCCccEEEEec--CHHHHHHHHHHHHHHHHhccC--ceEEEEEechhcchhHHHhcCcccCce
Confidence 2347788899998877 44454443332 456677789999999999987 68999999998876 677799999999
Q ss_pred EEEEcCCCceEEecC----CCCHHHHHHHHHhhcCCCC
Q 010824 453 VFFRSASGKTVPYEG----DRTKEDIVDFIENNRDKAA 486 (500)
Q Consensus 453 ~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~~~~~~ 486 (500)
+++...+++ ..+.+ ..+.++|.+|+++..++..
T Consensus 306 ~~i~~~~~~-y~~~~~~~~~~~~~~l~~Fv~~~~~gk~ 342 (477)
T PTZ00102 306 LAYQSPAGR-YLLPPAKESFDSVEALIEFFKDVEAGKV 342 (477)
T ss_pred EEEEcCCcc-cCCCccccccCCHHHHHHHHHHHhCCCC
Confidence 988864443 22333 3789999999999887644
No 95
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.55 E-value=1.8e-14 Score=111.70 Aligned_cols=93 Identities=26% Similarity=0.482 Sum_probs=83.3
Q ss_pred hhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEE
Q 010824 385 LQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP 464 (500)
Q Consensus 385 ~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~ 464 (500)
++..+.+.+++++++||++||+.|+.+.|.++++++.+++ ++.++.+|++.++...+++++.++|++++|++|+.+.+
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEE
Confidence 4566777899999999999999999999999999999875 69999999999888888899999999999987666778
Q ss_pred ecCCCCHHHHHHHHH
Q 010824 465 YEGDRTKEDIVDFIE 479 (500)
Q Consensus 465 ~~g~~~~~~l~~~i~ 479 (500)
+.|..+.+++.+||+
T Consensus 83 ~~g~~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGVKMKSEYREFIE 97 (97)
T ss_pred EeCCccHHHHHHhhC
Confidence 999999999999874
No 96
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=3.5e-14 Score=109.69 Aligned_cols=86 Identities=34% Similarity=0.746 Sum_probs=72.9
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecC
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYK 125 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~ 125 (500)
.++++++|+||++||++|+.+.|.+.+++.++.+ +.|..||+++... ++++++|+..||++||++| +...++.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~--~~~~~~V~~~PTf~f~k~g-~~~~~~v 91 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEE--VAKEFNVKAMPTFVFYKGG-EEVDEVV 91 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHh--HHHhcCceEeeEEEEEECC-EEEEEEe
Confidence 3468999999999999999999999999999854 8999999999444 9999999999999999976 7778888
Q ss_pred CCCCHHHHHHHHHh
Q 010824 126 GPREADGIVEYLKK 139 (500)
Q Consensus 126 g~~~~~~l~~~i~~ 139 (500)
|.... .+.+.+..
T Consensus 92 Ga~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 92 GANKA-ELEKKIAK 104 (106)
T ss_pred cCCHH-HHHHHHHh
Confidence 86444 55555543
No 97
>PTZ00051 thioredoxin; Provisional
Probab=99.54 E-value=3.4e-14 Score=110.67 Aligned_cols=89 Identities=34% Similarity=0.787 Sum_probs=77.5
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
+.++|..+++.+++++|+||++||++|+.+.+.+.++++.+. ++.|+.+|++.... ++++|+|.++|++++|++
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~vd~~~~~~--~~~~~~v~~~Pt~~~~~~ 80 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT----KMVFVKVDVDELSE--VAEKENITSMPTFKVFKN 80 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC----CcEEEEEECcchHH--HHHHCCCceeeEEEEEeC
Confidence 346789999999999999999999999999999999998754 38999999998877 999999999999999986
Q ss_pred CCceeeecCCCCCHHHH
Q 010824 117 GGKTIQEYKGPREADGI 133 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l 133 (500)
| +...++.|. ..+.|
T Consensus 81 g-~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 81 G-SVVDTLLGA-NDEAL 95 (98)
T ss_pred C-eEEEEEeCC-CHHHh
Confidence 5 788889985 44444
No 98
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.54 E-value=2.1e-14 Score=116.16 Aligned_cols=102 Identities=20% Similarity=0.243 Sum_probs=86.7
Q ss_pred eccchhhhhh-cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEE-EEcC
Q 010824 381 VADSLQDMVF-NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF-FRSA 458 (500)
Q Consensus 381 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~-~~~~ 458 (500)
+..+|++.+. ..++.++|.||++||++|+.+.|.|.+++..+++ .+.|++||+++++++.+.|+|++.|+++ +|.+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 5678888886 4588999999999999999999999999999876 5888999999999999999999777666 8877
Q ss_pred CC-ceEEecC--------CCCHHHHHHHHHhhcCC
Q 010824 459 SG-KTVPYEG--------DRTKEDIVDFIENNRDK 484 (500)
Q Consensus 459 ~~-~~~~~~g--------~~~~~~l~~~i~~~~~~ 484 (500)
|. .+.+..| ..+.++|++-++....+
T Consensus 88 g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 88 KHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred CeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 76 3556767 68889999999887643
No 99
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.53 E-value=6.1e-14 Score=116.20 Aligned_cols=101 Identities=22% Similarity=0.425 Sum_probs=82.9
Q ss_pred ccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC--CCCCCCCcCcceEEEEEcCC
Q 010824 382 ADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND--IPGDTFEVQGYPTVFFRSAS 459 (500)
Q Consensus 382 ~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~i~~~P~~~~~~~~ 459 (500)
..+++..+ ..+++++|+||++||++|+.+.|.+.+++..+.+ ++.|+.+|++.+. ...++|++.++|++++|.++
T Consensus 10 ~~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~--~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD--QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc--CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 34555554 6788999999999999999999999999999875 4777777777543 45677999999999999655
Q ss_pred Cc-eEEecCCCCHHHHHHHHHhhcCCC
Q 010824 460 GK-TVPYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 460 ~~-~~~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
++ +.++.|..+.+.|.++|.+.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 55 558889999999999999988654
No 100
>PLN02309 5'-adenylylsulfate reductase
Probab=99.52 E-value=5.9e-14 Score=136.44 Aligned_cols=108 Identities=21% Similarity=0.496 Sum_probs=93.6
Q ss_pred CCCCeEEEeccchhhhhh--cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC-CCCCCCC-CCCcC
Q 010824 373 NNEPVKVLVADSLQDMVF--NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT-ANDIPGD-TFEVQ 448 (500)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~~-~~~i~ 448 (500)
....+..|+.++|++++. +.++.++|+||+|||++|+.+.|.|.+++..+.+. ++.|+++|++ .+...+. .++|.
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~-~V~f~kVD~d~~~~~la~~~~~I~ 421 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG 421 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CeEEEEEECCCcchHHHHhhCCCc
Confidence 445789999999999884 57899999999999999999999999999998653 6999999999 6666664 59999
Q ss_pred cceEEEEEcCCCc-eEEecC-CCCHHHHHHHHHhh
Q 010824 449 GYPTVFFRSASGK-TVPYEG-DRTKEDIVDFIENN 481 (500)
Q Consensus 449 ~~P~~~~~~~~~~-~~~~~g-~~~~~~l~~~i~~~ 481 (500)
++||+++|++|.. .+.|.| .++.++|++||+..
T Consensus 422 ~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 422 SFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred eeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 9999999987764 778985 69999999999864
No 101
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.51 E-value=5.5e-14 Score=109.29 Aligned_cols=94 Identities=19% Similarity=0.423 Sum_probs=79.3
Q ss_pred ccchhhhhhcC-CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC
Q 010824 382 ADSLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG 460 (500)
Q Consensus 382 ~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 460 (500)
.++|++.+.+. ++.++|+||++||++|+.+.+.|.+++..+.. ++.++++|++.++..+++|++.++|++++|.+|.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~--~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP--SVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC--ceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45777777544 68999999999999999999999999988733 7999999999998888899999999999997665
Q ss_pred ceEEecCCCCHHHHHHHH
Q 010824 461 KTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 461 ~~~~~~g~~~~~~l~~~i 478 (500)
...++.| .+.+.|.+.|
T Consensus 80 ~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEeC-CCHHHHHHhh
Confidence 5556667 5777777765
No 102
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.51 E-value=8.3e-14 Score=113.66 Aligned_cols=101 Identities=25% Similarity=0.463 Sum_probs=84.2
Q ss_pred cChhhhhccC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhcCCCCCeEEEEEecChh-----------hhHHHHHhc
Q 010824 39 SNFSDTVSKH-NFIVVEFYAPWCGHCKKLAPEYE---KAASELSSHDPPVVLAKVDANEE-----------ANKELASQY 103 (500)
Q Consensus 39 ~~~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~~ 103 (500)
+.++.+++++ ++++|.||++||++|+.+.+.+. .+.+.+.+. +.+..+|.+.+ ...+++.+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 3567788899 99999999999999999999885 555556543 88899998764 124499999
Q ss_pred CcccccEEEEEecC-CceeeecCCCCCHHHHHHHHHhhcC
Q 010824 104 EIRGFPTIKILRNG-GKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 104 ~i~~~P~~~~~~~~-~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+|.++|++++++++ |+.+.++.|..+.+.+.+++.....
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 99999999999987 7888999999999999999887653
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.51 E-value=1.7e-13 Score=105.52 Aligned_cols=93 Identities=37% Similarity=0.767 Sum_probs=82.7
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCC
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGG 118 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~ 118 (500)
++|+..+.++++++|+||++||++|+.+.+.+.++++. . +++.++.+|++.... +++++++.++|++++|++|
T Consensus 1 ~~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~--~~~~~~v~~~P~~~~~~~g- 73 (93)
T cd02947 1 EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENPE--LAEEYGVRSIPTFLFFKNG- 73 (93)
T ss_pred CchHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCChh--HHHhcCcccccEEEEEECC-
Confidence 36788888889999999999999999999999999888 3 349999999999887 9999999999999999976
Q ss_pred ceeeecCCCCCHHHHHHHHH
Q 010824 119 KTIQEYKGPREADGIVEYLK 138 (500)
Q Consensus 119 ~~~~~~~g~~~~~~l~~~i~ 138 (500)
+....+.|..+.+.|.+||.
T Consensus 74 ~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 74 KEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred EEEEEEecCCCHHHHHHHhC
Confidence 67889999998899988873
No 104
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.50 E-value=3.2e-14 Score=112.01 Aligned_cols=94 Identities=29% Similarity=0.483 Sum_probs=78.1
Q ss_pred cchhhhhhcCCCeEEEEEECCCChhHhhhhHHH---HHHHHHcCCCCceEEEEEeCCCC----CCCCCCCCcCcceEEEE
Q 010824 383 DSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPIL---DEVAVSYQNDADVVIAKFDATAN----DIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 383 ~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~~i~~~P~~~~ 455 (500)
+.|.+.+ +.+++++|+||++||++|+.+.+.+ .+++..+++ ++.++.+|++.+ ..+.+++++.++|++++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3456655 6789999999999999999999987 577877765 799999999874 34556799999999999
Q ss_pred EcC--CCceEEecCCCCHHHHHHHHH
Q 010824 456 RSA--SGKTVPYEGDRTKEDIVDFIE 479 (500)
Q Consensus 456 ~~~--~~~~~~~~g~~~~~~l~~~i~ 479 (500)
|++ |..+.++.|..+.++|.++|+
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHhC
Confidence 984 455778999999999999874
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.50 E-value=9e-14 Score=135.15 Aligned_cols=107 Identities=21% Similarity=0.480 Sum_probs=91.5
Q ss_pred CCCCeEEEeccchhhhhh--cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-C-CCCCCcC
Q 010824 373 NNEPVKVLVADSLQDMVF--NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-P-GDTFEVQ 448 (500)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~--~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~~~~~i~ 448 (500)
.+..|..|+.++|++.+. +.+++++|.||++||++|+.+.|.|++++..+++. ++.|+++|++.+.. . .++++|.
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~ 427 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLG 427 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCC
Confidence 345689999999999984 47889999999999999999999999999998653 58999999997642 3 3569999
Q ss_pred cceEEEEEcCCC-ceEEec-CCCCHHHHHHHHHh
Q 010824 449 GYPTVFFRSASG-KTVPYE-GDRTKEDIVDFIEN 480 (500)
Q Consensus 449 ~~P~~~~~~~~~-~~~~~~-g~~~~~~l~~~i~~ 480 (500)
++||+++|++|. .++.|. |.++.+.|.+||+-
T Consensus 428 ~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 428 SFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999999998875 367897 57999999999974
No 106
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.49 E-value=1.8e-13 Score=117.09 Aligned_cols=128 Identities=20% Similarity=0.330 Sum_probs=96.5
Q ss_pred HHHHHHHhcCCCCCccccCCCCCCCCCCeEEEec-cchhhhhhcCC--CeEEEEEECCCChhHhhhhHHHHHHHHHcCCC
Q 010824 349 APWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVA-DSLQDMVFNSG--KNVLLEFYAPWCGHCKKLAPILDEVAVSYQND 425 (500)
Q Consensus 349 ~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~-~~~~~~~~~~~--~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~ 425 (500)
+.|+..+..-++..-.+..+ .....+.+..++. ++|.+.+.+.+ ..++|+||++||++|+.+.|.|..++..+.
T Consensus 37 e~~l~~~R~~R~~el~~~~~-~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-- 113 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKLP-FGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-- 113 (175)
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC--
Confidence 34666655444333222110 1123567889988 99999986543 499999999999999999999999999885
Q ss_pred CceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecC-------CCCHHHHHHHHHhh
Q 010824 426 ADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEG-------DRTKEDIVDFIENN 481 (500)
Q Consensus 426 ~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~~ 481 (500)
.+.|++||++.+ .+..+|++.++||+++|..|..+.++.| ..+.+.|..+|.++
T Consensus 114 -~vkF~kVd~d~~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 114 -AVKFCKIRASAT-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred -CeEEEEEeccch-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 599999999987 7777899999999999987765555542 46788888888753
No 107
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.49 E-value=2.1e-13 Score=109.50 Aligned_cols=98 Identities=15% Similarity=0.188 Sum_probs=78.8
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC--CCC---------CC-
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND--IPG---------DT- 444 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~---------~~- 444 (500)
+..++.+++.+.+ ++++.++|+|+++||++|+.+.|.|.+++... ++.++.+|++.++ ... +.
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~ 82 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQT----KAPIYYIDSENNGSFEMSSLNDLTAFRSRF 82 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhc----CCcEEEEECCCccCcCcccHHHHHHHHHHc
Confidence 5667888898888 66888999999999999999999999999872 4678888888654 222 22
Q ss_pred ---CCcCcceEEEEEcCCCceEEecC-CCCHHHHHHHHH
Q 010824 445 ---FEVQGYPTVFFRSASGKTVPYEG-DRTKEDIVDFIE 479 (500)
Q Consensus 445 ---~~i~~~P~~~~~~~~~~~~~~~g-~~~~~~l~~~i~ 479 (500)
.++.++|++++|..|+.+.+..| ..+.++|.+|+.
T Consensus 83 ~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 83 GIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHhh
Confidence 34667999999987777778888 567999999874
No 108
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=5.2e-13 Score=114.34 Aligned_cols=101 Identities=22% Similarity=0.416 Sum_probs=82.9
Q ss_pred CceEEcCc-cChhhhhccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc
Q 010824 31 EFVLTLDH-SNFSDTVSKH---NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106 (500)
Q Consensus 31 ~~v~~l~~-~~~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 106 (500)
..+..+++ ++|...+.+. .+++|.||++||++|+.+.|.+.++++++. .+.|+.||++.. . ++.+|+|.
T Consensus 62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~----~vkF~kVd~d~~-~--l~~~f~v~ 134 (175)
T cd02987 62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP----AVKFCKIRASAT-G--ASDEFDTD 134 (175)
T ss_pred CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC----CeEEEEEeccch-h--hHHhCCCC
Confidence 45778888 9999998543 389999999999999999999999999974 399999999876 5 99999999
Q ss_pred cccEEEEEecCCceeeecCC-------CCCHHHHHHHHHh
Q 010824 107 GFPTIKILRNGGKTIQEYKG-------PREADGIVEYLKK 139 (500)
Q Consensus 107 ~~P~~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~ 139 (500)
.+||+++|++| +.+.++.| ..+.+.|..++.+
T Consensus 135 ~vPTlllyk~G-~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 135 ALPALLVYKGG-ELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred CCCEEEEEECC-EEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 99999999986 77666654 2455566655543
No 109
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.46 E-value=4.3e-13 Score=107.64 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=80.4
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------hHHHHHh
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------NKELASQ 102 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------~~~~~~~ 102 (500)
....++.++|.+.+.+++.++|+|+++|||+|+.+.|.+.+++++.+ +.++.||.+.+. -.++.++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 45568888999999999999999999999999999999999998832 456777766432 1236677
Q ss_pred cC----cccccEEEEEecCCceeeecCC-CCCHHHHHHHHH
Q 010824 103 YE----IRGFPTIKILRNGGKTIQEYKG-PREADGIVEYLK 138 (500)
Q Consensus 103 ~~----i~~~P~~~~~~~~~~~~~~~~g-~~~~~~l~~~i~ 138 (500)
++ |.++||+++|++| +.+.+..| ..+.++|.+|+.
T Consensus 82 ~~i~~~i~~~PT~v~~k~G-k~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDG-KQVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred cCCcccCCCCCEEEEEeCC-eEEEEEeCCCCCHHHHHHHhh
Confidence 65 4559999999986 78888888 456888888863
No 110
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.45 E-value=2.4e-13 Score=108.03 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=78.7
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc--eEEecCC
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK--TVPYEGD 468 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~--~~~~~g~ 468 (500)
..+..++|+||++||++|+.+.|.+.+++...+ .+.+..+|+++++...++|++.++|++++|++|++ .+++.|.
T Consensus 20 ~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~ 96 (113)
T cd02975 20 KNPVDLVVFSSKEGCQYCEVTKQLLEELSELSD---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGL 96 (113)
T ss_pred CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEec
Confidence 456679999999999999999999999998763 58999999999999999999999999999987654 3488899
Q ss_pred CCHHHHHHHHHhhcC
Q 010824 469 RTKEDIVDFIENNRD 483 (500)
Q Consensus 469 ~~~~~l~~~i~~~~~ 483 (500)
.+.+++.+||...+.
T Consensus 97 ~~~~el~~~i~~i~~ 111 (113)
T cd02975 97 PAGYEFASLIEDIVR 111 (113)
T ss_pred CchHHHHHHHHHHHh
Confidence 999999999987653
No 111
>PTZ00051 thioredoxin; Provisional
Probab=99.45 E-value=3.1e-13 Score=105.19 Aligned_cols=93 Identities=22% Similarity=0.481 Sum_probs=77.2
Q ss_pred EEEe-ccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEE
Q 010824 378 KVLV-ADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFR 456 (500)
Q Consensus 378 ~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 456 (500)
.+++ .+++.+.+ +.++.++|+||++||++|+.+.+.+.+++..+. ++.|+.+|++.+...++++++.++|++++|
T Consensus 3 ~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 3 HIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT---KMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred EEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC---CcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 4444 45566655 778999999999999999999999999998765 489999999998888889999999999999
Q ss_pred cCCCceEEecCCCCHHHHH
Q 010824 457 SASGKTVPYEGDRTKEDIV 475 (500)
Q Consensus 457 ~~~~~~~~~~g~~~~~~l~ 475 (500)
..|+.+.++.|. ..++|.
T Consensus 79 ~~g~~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGSVVDTLLGA-NDEALK 96 (98)
T ss_pred eCCeEEEEEeCC-CHHHhh
Confidence 877667788884 555553
No 112
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.45 E-value=4.9e-13 Score=102.84 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=67.7
Q ss_pred Chhhhhc--cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecC
Q 010824 40 NFSDTVS--KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 40 ~~~~~~~--~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
++++.+. ++++++|.|+++||++|+.+.|.++++++++... +.|+.||++..++ ++++|+|...||++||.+|
T Consensus 4 ~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~d--va~~y~I~amPtfvffkng 78 (114)
T cd02986 4 EVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVPV--YTQYFDISYIPSTIFFFNG 78 (114)
T ss_pred HHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccHH--HHHhcCceeCcEEEEEECC
Confidence 4566664 6899999999999999999999999999998654 8999999999888 9999999999999999987
Q ss_pred Cceee
Q 010824 118 GKTIQ 122 (500)
Q Consensus 118 ~~~~~ 122 (500)
+...
T Consensus 79 -kh~~ 82 (114)
T cd02986 79 -QHMK 82 (114)
T ss_pred -cEEE
Confidence 4433
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.45 E-value=2.7e-13 Score=104.24 Aligned_cols=97 Identities=21% Similarity=0.287 Sum_probs=77.1
Q ss_pred cchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc
Q 010824 383 DSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK 461 (500)
Q Consensus 383 ~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 461 (500)
++++..+.+ .++.++|.|+++||++|+.+.|.+.+++..+.+ .+.|+++|+++.++..+.|++.+.|++++|.+|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456666654 489999999999999999999999999999964 39999999999999999999999999999965543
Q ss_pred eE-Ee--------cCC-CCHHHHHHHHHhh
Q 010824 462 TV-PY--------EGD-RTKEDIVDFIENN 481 (500)
Q Consensus 462 ~~-~~--------~g~-~~~~~l~~~i~~~ 481 (500)
.. .+ .+. .+.+++++-+.-.
T Consensus 81 ~~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 81 MKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 22 22 122 4467777766543
No 114
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4e-13 Score=114.94 Aligned_cols=99 Identities=31% Similarity=0.627 Sum_probs=87.4
Q ss_pred CccChhhhh--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 37 DHSNFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 37 ~~~~~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
++.+|+..+ ...+.++|+|++.||++|+++.|.|+.++.+|.+ .+|..||++.... .+..+||...||+++|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~--taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRG--TAATNGVNAMPTFIFF 81 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhc--hhhhcCcccCceEEEE
Confidence 456788887 4557999999999999999999999999999865 7899999999998 9999999999999999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 115 RNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
++| ..+.++.| .+...|.+.+.+++..
T Consensus 82 ~ng-~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 82 RNG-VKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred ecC-eEeeeecC-CCHHHHHHHHHHHhcc
Confidence 987 77788888 6788899999888754
No 115
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.44 E-value=5.1e-13 Score=106.13 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=79.8
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCce
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKT 120 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~ 120 (500)
|...+.....++|.||++||++|+.+.|.++++++.+ +. +.+..+|.+..+. ++++|+|.++|++++|++|++.
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~~--l~~~~~v~~vPt~~i~~~g~~~ 88 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDKE--KAEKYGVERVPTTIFLQDGGKD 88 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCHH--HHHHcCCCcCCEEEEEeCCeec
Confidence 5455556667889999999999999999999999875 33 8999999998877 9999999999999999976433
Q ss_pred e-eecCCCCCHHHHHHHHHhhc
Q 010824 121 I-QEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 121 ~-~~~~g~~~~~~l~~~i~~~~ 141 (500)
. .++.|....+++.+||...+
T Consensus 89 ~~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 89 GGIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred ceEEEEecCchHHHHHHHHHHH
Confidence 2 37889999999999998755
No 116
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.41 E-value=3.9e-12 Score=103.03 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=93.4
Q ss_pred CcEEEeCCCCCCccchhhhhcCCCceEEEEEeC----CCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCC
Q 010824 245 PIVTVFNSDANNHPFVIKFFNSPNAKAMLFMNF----SSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGL 320 (500)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi 320 (500)
|.+.+++.+ ..+...|.....+++.|++. +.+..+++.+.++++|++|+++++.|+|+|...+..+++.||+
T Consensus 2 ~~~~~l~~~----~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSE----DVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNI 77 (130)
T ss_pred CceEEecCH----HHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCC
Confidence 445666662 33455666665666666664 2233478999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeCCCCcc--CCCCCChhhHHHHHHHHhcCCCCCc
Q 010824 321 QESQVPLIVIQTNDGQKY--LKPNLDADQIAPWVKEYKEGKVPPF 363 (500)
Q Consensus 321 ~~~~~P~i~i~~~~~~~y--~~~~~~~~~i~~fi~~~~~G~l~~~ 363 (500)
+..+.|++++++.++.+| +.++++.++|.+|++++++|++...
T Consensus 78 ~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~ 122 (130)
T cd02983 78 GGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRGPTL 122 (130)
T ss_pred CccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCcccc
Confidence 887999999999977688 6799999999999999999998643
No 117
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.40 E-value=1.5e-12 Score=100.11 Aligned_cols=92 Identities=32% Similarity=0.672 Sum_probs=80.1
Q ss_pred chhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceE
Q 010824 384 SLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTV 463 (500)
Q Consensus 384 ~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~ 463 (500)
+|.+.+ ..+++++|+||++||+.|+.+.+.+.+++.. . .++.++.+|++.+...++.+++.++|++++|.+|+...
T Consensus 2 ~~~~~~-~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELI-KSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHH-hcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 456666 4448999999999999999999999999888 2 37999999999998888889999999999998777677
Q ss_pred EecCCCCHHHHHHHHH
Q 010824 464 PYEGDRTKEDIVDFIE 479 (500)
Q Consensus 464 ~~~g~~~~~~l~~~i~ 479 (500)
.+.|..+.+.|.+||+
T Consensus 78 ~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 78 RVVGADPKEELEEFLE 93 (93)
T ss_pred EEecCCCHHHHHHHhC
Confidence 8889888899998873
No 118
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.40 E-value=3.5e-13 Score=118.11 Aligned_cols=93 Identities=35% Similarity=0.725 Sum_probs=84.0
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCC-CCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCC
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQN-DADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDR 469 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~ 469 (500)
.++..|+|.||+|||.+|+.+.|.|.++...++. ...++++++|++..+.+...++|+++|||.+| +|+..+.|.|++
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~-kgd~a~dYRG~R 119 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFF-KGDHAIDYRGGR 119 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEe-cCCeeeecCCCc
Confidence 3577899999999999999999999999998864 45799999999999999999999999999999 577788999999
Q ss_pred CHHHHHHHHHhhcCC
Q 010824 470 TKEDIVDFIENNRDK 484 (500)
Q Consensus 470 ~~~~l~~~i~~~~~~ 484 (500)
+.+.|++|..+-.+.
T Consensus 120 ~Kd~iieFAhR~a~a 134 (468)
T KOG4277|consen 120 EKDAIIEFAHRCAAA 134 (468)
T ss_pred cHHHHHHHHHhcccc
Confidence 999999999876654
No 119
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.39 E-value=1.6e-12 Score=112.66 Aligned_cols=122 Identities=16% Similarity=0.249 Sum_probs=92.8
Q ss_pred HHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcC--CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCce
Q 010824 351 WVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNS--GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADV 428 (500)
Q Consensus 351 fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 428 (500)
|+..+..-++..-.+... ....+.+..++..+|...+... +..|+|+||++||++|+.+.|.|..++..+. .+
T Consensus 60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~---~v 134 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP---DT 134 (192)
T ss_pred HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC---CC
Confidence 555555444433222111 1245779999999999888554 3589999999999999999999999999985 48
Q ss_pred EEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecC-------CCCHHHHHHHHHh
Q 010824 429 VIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEG-------DRTKEDIVDFIEN 480 (500)
Q Consensus 429 ~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~ 480 (500)
+|++||++.. ...|++.++||+++|..|..+.++.| ..+.++|..+|.+
T Consensus 135 kFvkI~ad~~---~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 135 KFVKIISTQC---IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEEEEhHHh---HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999999863 45699999999999987766666654 4677888888765
No 120
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.38 E-value=3.2e-12 Score=100.65 Aligned_cols=105 Identities=19% Similarity=0.259 Sum_probs=95.0
Q ss_pred EEEeCCCCCCccchhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHHHh---hcCceeEEEEEcccchhhHHhhcCCCCC
Q 010824 247 VTVFNSDANNHPFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQ---YKGQGISFLLGDLEASQGAFQYFGLQES 323 (500)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va~~---~~~~~~~f~~~d~~~~~~~~~~~gi~~~ 323 (500)
++++++ .|...++.++.|..++|+ +.++.+++...++++|++ |+++ +.|+++|...+...++.||++..
T Consensus 1 ~~e~t~-----e~~~~~~~~~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~~~~~~~fgl~~~ 72 (111)
T cd03072 1 VREITF-----ENAEELTEEGLPFLILFH--DKDDLESLKEFKQAVARQLISEKGA-INFLTADGDKFRHPLLHLGKTPA 72 (111)
T ss_pred Cccccc-----ccHHHHhcCCCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCce-EEEEEEechHhhhHHHHcCCCHh
Confidence 356677 688999999999998888 666678999999999999 9999 99999999999889999999988
Q ss_pred CCceEEEEeCCC-Ccc--CCCCCChhhHHHHHHHHhcCC
Q 010824 324 QVPLIVIQTNDG-QKY--LKPNLDADQIAPWVKEYKEGK 359 (500)
Q Consensus 324 ~~P~i~i~~~~~-~~y--~~~~~~~~~i~~fi~~~~~G~ 359 (500)
+.|.++|.+.++ .+| +.+.++.++|.+|++++++|+
T Consensus 73 ~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 73 DLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred HCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 899999999977 788 558999999999999999996
No 121
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.6e-10 Score=110.28 Aligned_cols=306 Identities=13% Similarity=0.156 Sum_probs=223.4
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCC---chhHHHHHHHHHHhcC---CceEEEee---cccccCCCCCCCCC-CeE
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFS---GEEFENYTALAEKLRS---DYEFGHTQ---NAKLLPRGESSVTG-PVV 214 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~f~~~a~~~~~---~~~f~~~~---~~~~~~~~~~~~~~-p~~ 214 (500)
+.++ +.+.+.+++..+..+++-|+..++ +.+.+.|.++|..+.. .+..+-+. +.+++.+ +++.. |++
T Consensus 27 Vl~L-t~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~--y~v~gyPTl 103 (493)
T KOG0190|consen 27 VLVL-TKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASK--YEVRGYPTL 103 (493)
T ss_pred eEEE-ecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhh--hcCCCCCeE
Confidence 4555 778899999999999999997766 5677899999999877 56777777 4567777 88888 999
Q ss_pred EEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHHH
Q 010824 215 RLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAE 294 (500)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va~ 294 (500)
-+||+......|.|..+.+.|..|++..+.|....+... ......... ...+++-+..+.... . +.+...|.
T Consensus 104 kiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~----~~a~~~l~~-~~~~vig~F~d~~~~-~--~~~~~~a~ 175 (493)
T KOG0190|consen 104 KIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTV----DEAEEFLSK-KDVVVIGFFKDLESL-A--ESFFDAAS 175 (493)
T ss_pred EEEecCCcceeccCcccHHHHHHHHHhccCCCceecccH----HHHHhhccC-CceEEEEEecccccc-h--HHHHHHHH
Confidence 999997775599999999999999999999999888862 445555555 444443333222221 2 56677777
Q ss_pred hhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC-Ccc-CCCCCChhhHHHHHHHHhcCCCCCccccCCCCCC
Q 010824 295 QYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG-QKY-LKPNLDADQIAPWVKEYKEGKVPPFRKSEPIPEE 372 (500)
Q Consensus 295 ~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~-~~y-~~~~~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~ 372 (500)
...+. +.|+... ..++...++.+....|.+++.+.-. ..+ +.+.++.+.|.+||....
T Consensus 176 ~l~~d-~~F~~ts---~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~---------------- 235 (493)
T KOG0190|consen 176 KLRDD-YKFAHTS---DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENS---------------- 235 (493)
T ss_pred hcccc-ceeeccC---cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhc----------------
Confidence 78887 9999443 3467778888754566677777765 333 789999999999998743
Q ss_pred CCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcC--cc
Q 010824 373 NNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ--GY 450 (500)
Q Consensus 373 ~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~--~~ 450 (500)
...+..+|.++........=+.-+++|-..-|..-....+.+.+++..+++ .+.|+.+|.+......+.+++. ..
T Consensus 236 -~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~--~l~Fi~~d~e~~~~~~~~~Gl~~~~~ 312 (493)
T KOG0190|consen 236 -LPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKG--KLRFILIDPESFARVLEFFGLEEEQL 312 (493)
T ss_pred -ccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhccc--ceEEEEEChHHhhHHHHhcCcccccC
Confidence 223666676666666644334555566667788889999999999999988 7999999888887777667775 56
Q ss_pred eEEEEEcCCCceEE--ec-CCCCHHHHHHHHHhhcCCC
Q 010824 451 PTVFFRSASGKTVP--YE-GDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 451 P~~~~~~~~~~~~~--~~-g~~~~~~l~~~i~~~~~~~ 485 (500)
| +.++-.+..... .. ...+.+.|..|+++.+.+.
T Consensus 313 ~-~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk 349 (493)
T KOG0190|consen 313 P-IRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGK 349 (493)
T ss_pred C-eeEEeeccccccccCccccccHHHHHHHHHHHhcCc
Confidence 6 333322332222 33 3477788999999988654
No 122
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.36 E-value=1.8e-12 Score=105.71 Aligned_cols=97 Identities=24% Similarity=0.386 Sum_probs=77.1
Q ss_pred hhhhhhcCC-CeEEEEEECCCChhHhhhhHHHH---HHHHHcCCCCceEEEEEeCCCC-------------CCCCCCCCc
Q 010824 385 LQDMVFNSG-KNVLLEFYAPWCGHCKKLAPILD---EVAVSYQNDADVVIAKFDATAN-------------DIPGDTFEV 447 (500)
Q Consensus 385 ~~~~~~~~~-~~~~v~f~~~~c~~c~~~~~~~~---~~~~~~~~~~~~~~~~id~~~~-------------~~~~~~~~i 447 (500)
+.... +.+ ++++|+||++||++|+.+.+.+. .+...+++ ++.++.+|++.+ ..+..+|++
T Consensus 6 ~~~a~-~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 6 LAEAA-ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHH-HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34444 556 99999999999999999999875 55555654 688999999865 244567899
Q ss_pred CcceEEEEEcCC-Cc-eEEecCCCCHHHHHHHHHhhcCC
Q 010824 448 QGYPTVFFRSAS-GK-TVPYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 448 ~~~P~~~~~~~~-~~-~~~~~g~~~~~~l~~~i~~~~~~ 484 (500)
.++|++++|.++ ++ +.++.|..+.+.+.++|++..++
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 999999999876 55 55889999999999999876643
No 123
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=4.5e-12 Score=99.67 Aligned_cols=89 Identities=17% Similarity=0.312 Sum_probs=76.6
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc--cccEEEEEecC-Cceeee
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR--GFPTIKILRNG-GKTIQE 123 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~--~~P~~~~~~~~-~~~~~~ 123 (500)
.++++++.|+++||++|+.+.+.++++++++++. +.|+.||++..+. +++++|+. ++|++++++.+ |.....
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~~--~~~~~~i~~~~~P~~~~~~~~~~~k~~~ 85 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFGR--HLEYFGLKEEDLPVIAIINLSDGKKYLM 85 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhHH--HHHHcCCChhhCCEEEEEecccccccCC
Confidence 3678999999999999999999999999999865 9999999999887 99999999 99999999983 233333
Q ss_pred cCCCCCHHHHHHHHHhh
Q 010824 124 YKGPREADGIVEYLKKQ 140 (500)
Q Consensus 124 ~~g~~~~~~l~~~i~~~ 140 (500)
..|..+.+.|.+|+.+.
T Consensus 86 ~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 86 PEEELTAESLEEFVEDF 102 (103)
T ss_pred CccccCHHHHHHHHHhh
Confidence 34456999999999864
No 124
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.35 E-value=2.9e-11 Score=105.01 Aligned_cols=107 Identities=20% Similarity=0.422 Sum_probs=87.1
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh----------------
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------------- 95 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------- 95 (500)
.+..++.+.+....-++++++|+||++||++|+...+.+.++++++.+.+ +.+..|+++...
T Consensus 45 ~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 34456666555444577899999999999999999999999999997543 777888775432
Q ss_pred ----hHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 96 ----NKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 96 ----~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
...++++|++.++|++++++.+|+....+.|..+.+++.+++.+.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 234889999999999999998888888999999999999988753
No 125
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.34 E-value=1.8e-11 Score=120.88 Aligned_cols=93 Identities=22% Similarity=0.368 Sum_probs=76.1
Q ss_pred hccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEec--------------------------ChhhhHH
Q 010824 45 VSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA--------------------------NEEANKE 98 (500)
Q Consensus 45 ~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~--------------------------~~~~~~~ 98 (500)
+.+++++||.||++||++|+...|.+.+++++++..+ +.+..|.. ..+....
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~ 130 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGT 130 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHH
Confidence 3588999999999999999999999999999887433 44444432 0112334
Q ss_pred HHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHh
Q 010824 99 LASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 99 ~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
+++.|+|.++|+++++.++|+.+..+.|..+.+.|.++|+.
T Consensus 131 lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 131 LAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 88999999999999998778999999999999999999984
No 126
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.7e-12 Score=106.88 Aligned_cols=103 Identities=26% Similarity=0.450 Sum_probs=89.6
Q ss_pred eccchhhhhh-cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCC
Q 010824 381 VADSLQDMVF-NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSAS 459 (500)
Q Consensus 381 ~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 459 (500)
++.+|+..+. ...+.++|.||++||++|+...|.|..++.+|. +..|.+||+++-......+++..+||+++|..|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp---~aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP---GAVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc---ccEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 5677888874 457899999999999999999999999999996 599999999998888888999999999999777
Q ss_pred CceEEecCCCCHHHHHHHHHhhcCCCCC
Q 010824 460 GKTVPYEGDRTKEDIVDFIENNRDKAAP 487 (500)
Q Consensus 460 ~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 487 (500)
.++..+-| .+...|.+-+++++++...
T Consensus 85 ~kid~~qG-Ad~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 85 VKIDQIQG-ADASGLEEKVAKYASTSAA 111 (288)
T ss_pred eEeeeecC-CCHHHHHHHHHHHhccCcc
Confidence 66667776 8899999999999877554
No 127
>PTZ00062 glutaredoxin; Provisional
Probab=99.31 E-value=1.5e-11 Score=106.75 Aligned_cols=113 Identities=11% Similarity=0.190 Sum_probs=90.9
Q ss_pred CccChhhhhccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 37 DHSNFSDTVSKH-NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 37 ~~~~~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
+.++|++++..+ ..++++|+++||++|+.+.+.+.++++++. ++.|+.||.+ |+|.++|+++||+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~----~~~F~~V~~d----------~~V~~vPtfv~~~ 70 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP----SLEFYVVNLA----------DANNEYGVFEFYQ 70 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC----CcEEEEEccc----------cCcccceEEEEEE
Confidence 456788888754 678999999999999999999999999874 3999999975 8999999999999
Q ss_pred cCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEE
Q 010824 116 NGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVII 166 (500)
Q Consensus 116 ~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i 166 (500)
+| +.+.++.|. +...|..++.+...+....- ..+.++++++++++++.
T Consensus 71 ~g-~~i~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvvf 118 (204)
T PTZ00062 71 NS-QLINSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILLF 118 (204)
T ss_pred CC-EEEeeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEEE
Confidence 76 788899985 48889999988876544321 34456777777776665
No 128
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.31 E-value=2.7e-12 Score=113.01 Aligned_cols=105 Identities=27% Similarity=0.584 Sum_probs=91.5
Q ss_pred eccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCC---CCceEEEEEeCCCCCCCCCCCCcCcceEEEEEc
Q 010824 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQN---DADVVIAKFDATANDIPGDTFEVQGYPTVFFRS 457 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~---~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 457 (500)
+.++++.++ +.+..++|.|||+||+.++.++|.|.+.+..++. +.++.+++|||+.++.++.+|.|..+||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 456677777 6699999999999999999999999999987732 258999999999999999999999999999997
Q ss_pred CCCceE-EecCCCCHHHHHHHHHhhcCCCC
Q 010824 458 ASGKTV-PYEGDRTKEDIVDFIENNRDKAA 486 (500)
Q Consensus 458 ~~~~~~-~~~g~~~~~~l~~~i~~~~~~~~ 486 (500)
.|.... .|.|.++++.|.+||+++.+.+.
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i 110 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPI 110 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHH
Confidence 666544 79999999999999999887544
No 129
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.30 E-value=1.3e-10 Score=101.94 Aligned_cols=171 Identities=18% Similarity=0.268 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCC-cc-CCCC-CChhhHHHHHHHHhcCC
Q 010824 283 EPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQ-KY-LKPN-LDADQIAPWVKEYKEGK 359 (500)
Q Consensus 283 ~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~-~y-~~~~-~~~~~i~~fi~~~~~G~ 359 (500)
....+.+.++|..+.+. +.|+.+.. +++++.+|++ . |.+++++.... .. |.+. ++.+.|.+||..-.
T Consensus 6 ~~~~~~f~~~A~~~~~~-~~F~~~~~---~~~~~~~~~~--~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~--- 75 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGD-YQFGVTFN---EELAKKYGIK--E-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNS--- 75 (184)
T ss_dssp SHHHHHHHHHHHHHTTT-SEEEEEE----HHHHHHCTCS--S-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHS---
T ss_pred cHHHHHHHHHHHhCcCC-cEEEEEcH---HHHHHHhCCC--C-CcEEEeccCCCCceecccccCCHHHHHHHHHHhc---
Confidence 47788999999999998 99999874 3577778887 4 99999998553 34 7776 99999999999843
Q ss_pred CCCccccCCCCCCCCCCeEEEeccchhhhhhcCCC-eEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC
Q 010824 360 VPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGK-NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN 438 (500)
Q Consensus 360 l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 438 (500)
-+.+.+++.+++..+. +.+. .++++|..........+...+..++..+++ .+.|+.+|++..
T Consensus 76 --------------~P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~~~ 138 (184)
T PF13848_consen 76 --------------FPLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDADDF 138 (184)
T ss_dssp --------------STSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETTTT
T ss_pred --------------cccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehHHh
Confidence 2348899999999988 4454 488888888888889999999999999986 699999999977
Q ss_pred CCCCCCCCcC--cceEEEEEcCCCceE--EecCCCCHHHHHHHHHh
Q 010824 439 DIPGDTFEVQ--GYPTVFFRSASGKTV--PYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 439 ~~~~~~~~i~--~~P~~~~~~~~~~~~--~~~g~~~~~~l~~~i~~ 480 (500)
+...+.+++. .+|+++++....... ...+.++.++|.+|+++
T Consensus 139 ~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 139 PRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 7777778887 999999997443323 23689999999999975
No 130
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.29 E-value=2.2e-11 Score=105.71 Aligned_cols=98 Identities=18% Similarity=0.367 Sum_probs=79.4
Q ss_pred CceEEcCccChhhhh-cc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 31 EFVLTLDHSNFSDTV-SK--HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 31 ~~v~~l~~~~~~~~~-~~--~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
..|..++..+|...+ .. +.+++|.||++||++|+.+.|.|.++|+++.. +.|+.||.+. .+..|++.+
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~-----~~~~~~i~~ 152 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ-----CIPNYPDKN 152 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH-----hHhhCCCCC
Confidence 457888999999765 33 35899999999999999999999999999743 8999999864 468999999
Q ss_pred ccEEEEEecCCceeeecCCC-------CCHHHHHHHHH
Q 010824 108 FPTIKILRNGGKTIQEYKGP-------READGIVEYLK 138 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~g~-------~~~~~l~~~i~ 138 (500)
+||+++|++| ..+.++.|. .+.+.|..++.
T Consensus 153 lPTlliyk~G-~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 153 LPTILVYRNG-DIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred CCEEEEEECC-EEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 9999999986 777777763 45555555554
No 131
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.29 E-value=9.2e-12 Score=98.23 Aligned_cols=78 Identities=21% Similarity=0.429 Sum_probs=65.8
Q ss_pred CccChhhhhcc--CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----hHHHHHh
Q 010824 37 DHSNFSDTVSK--HNFIVVEFYA-------PWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----NKELASQ 102 (500)
Q Consensus 37 ~~~~~~~~~~~--~~~~lv~f~~-------~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~ 102 (500)
+.++|.+.+.. +++++|.||+ +||++|+.+.|.+++++.++.+. +.|+.||++..+ ..++..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcccccCcchhhHhc
Confidence 44567777754 7899999999 99999999999999999998743 889999997632 3349999
Q ss_pred cCcc-cccEEEEEecC
Q 010824 103 YEIR-GFPTIKILRNG 117 (500)
Q Consensus 103 ~~i~-~~P~~~~~~~~ 117 (500)
++|. ++||+++|+.+
T Consensus 85 ~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 85 PKLTTGVPTLLRWKTP 100 (119)
T ss_pred cCcccCCCEEEEEcCC
Confidence 9998 99999999866
No 132
>PTZ00062 glutaredoxin; Provisional
Probab=99.28 E-value=2.1e-11 Score=105.90 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=80.0
Q ss_pred eccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC
Q 010824 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG 460 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~ 460 (500)
+.+++.+.+.++.+.++++|+++||++|+.+.|.+.+++..+. ++.|++||.+ |+|.++|++++|..|.
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~---~~~F~~V~~d--------~~V~~vPtfv~~~~g~ 73 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP---SLEFYVVNLA--------DANNEYGVFEFYQNSQ 73 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC---CcEEEEEccc--------cCcccceEEEEEECCE
Confidence 4567788875555889999999999999999999999999885 5999999987 8999999999998777
Q ss_pred ceEEecCCCCHHHHHHHHHhhcCCC
Q 010824 461 KTVPYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 461 ~~~~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
.+.++.| .+...|.++++.+.+..
T Consensus 74 ~i~r~~G-~~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 74 LINSLEG-CNTSTLVSFIRGWAQKG 97 (204)
T ss_pred EEeeeeC-CCHHHHHHHHHHHcCCC
Confidence 7788888 56888888888877643
No 133
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=3e-11 Score=90.51 Aligned_cols=80 Identities=29% Similarity=0.459 Sum_probs=69.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCH
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREA 130 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~ 130 (500)
-+..||++||++|+.+.+.++++++.+... +.+..||++.++. +++++++.++|++++ +| + .++.|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~~--~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENPQ--KAMEYGIMAVPAIVI--NG-D--VEFIGAPTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCHH--HHHHcCCccCCEEEE--CC-E--EEEecCCCH
Confidence 367899999999999999999999998654 8999999988877 999999999999986 33 4 378899999
Q ss_pred HHHHHHHHhh
Q 010824 131 DGIVEYLKKQ 140 (500)
Q Consensus 131 ~~l~~~i~~~ 140 (500)
+.+.+++.+.
T Consensus 72 ~~l~~~l~~~ 81 (82)
T TIGR00411 72 EELVEAIKKR 81 (82)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 134
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.28 E-value=9.8e-11 Score=97.49 Aligned_cols=95 Identities=14% Similarity=0.306 Sum_probs=68.3
Q ss_pred hhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------hHHHH-Hhc---CcccccE
Q 010824 43 DTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--------NKELA-SQY---EIRGFPT 110 (500)
Q Consensus 43 ~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------~~~~~-~~~---~i~~~P~ 110 (500)
..+..+++.+|+||++||++|++..|.+.++++++. ..+..+.+|-.... ..... ..+ ++.++|+
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPT 121 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPA 121 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCe
Confidence 334456677999999999999999999999999873 22444444422100 11233 445 7899999
Q ss_pred EEEEecCCce-eeecCCCCCHHHHHHHHHhh
Q 010824 111 IKILRNGGKT-IQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 111 ~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 140 (500)
.++++.+|.. ...+.|..+.+.+.+.+.+.
T Consensus 122 t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 122 TFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 9999986554 45789999999998888764
No 135
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.27 E-value=5.6e-12 Score=100.58 Aligned_cols=97 Identities=15% Similarity=0.326 Sum_probs=68.8
Q ss_pred ChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc--ccEEEEEecC
Q 010824 40 NFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG--FPTIKILRNG 117 (500)
Q Consensus 40 ~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~--~P~~~~~~~~ 117 (500)
.++.+..++++++|.||++||++|+.+.|.+.+....... . ..|+.||.+.++. ....+|++.+ +|+++||+++
T Consensus 11 al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~ 86 (117)
T cd02959 11 GIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPS 86 (117)
T ss_pred HHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCCC-chhhhcccCCCccceEEEECCC
Confidence 4566668899999999999999999999999998775543 2 2344455544432 1567888876 9999999877
Q ss_pred Cceee---ecCCCCCHHHHHHHHHhh
Q 010824 118 GKTIQ---EYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 118 ~~~~~---~~~g~~~~~~l~~~i~~~ 140 (500)
|+... ...|......+...+...
T Consensus 87 Gk~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 87 GDVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCCchhhccCCCCccccccCCCHHHH
Confidence 77765 455656655555555443
No 136
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.26 E-value=1.2e-11 Score=97.13 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcC--cceEEEEEcC--CCceEEecCC
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ--GYPTVFFRSA--SGKTVPYEGD 468 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~--~~P~~~~~~~--~~~~~~~~g~ 468 (500)
++++++.|+++||++|+.+.+.+.+++..+++ ++.|+.+|++.++...+.+++. ++|+++++.. |++.....|.
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~ 89 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEE 89 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccc
Confidence 68999999999999999999999999999986 6999999999998898889999 9999999977 4443333355
Q ss_pred CCHHHHHHHHHhh
Q 010824 469 RTKEDIVDFIENN 481 (500)
Q Consensus 469 ~~~~~l~~~i~~~ 481 (500)
.+.++|.+||++.
T Consensus 90 ~~~~~l~~fi~~~ 102 (103)
T cd02982 90 LTAESLEEFVEDF 102 (103)
T ss_pred cCHHHHHHHHHhh
Confidence 6999999999875
No 137
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.25 E-value=3.7e-11 Score=94.85 Aligned_cols=95 Identities=19% Similarity=0.352 Sum_probs=72.5
Q ss_pred eccchhhhhhcC-CCeEEEEEEC-------CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-------CCCCCCC
Q 010824 381 VADSLQDMVFNS-GKNVLLEFYA-------PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-------DIPGDTF 445 (500)
Q Consensus 381 ~~~~~~~~~~~~-~~~~~v~f~~-------~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------~~~~~~~ 445 (500)
+.++|.+.+.+. +++++|+||| +||++|+.+.|.+++++..+.+ ++.|++||++.+ ......+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~ 85 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDP 85 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhcc
Confidence 456677777543 6899999999 9999999999999999999874 589999999764 4566678
Q ss_pred CcC-cceEEEEEcCCCceEEecCCCCHHHHHHHH
Q 010824 446 EVQ-GYPTVFFRSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 446 ~i~-~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
++. ++||+++|..+++++ -..-++.+.+..|+
T Consensus 86 ~I~~~iPT~~~~~~~~~l~-~~~c~~~~~~~~~~ 118 (119)
T cd02952 86 KLTTGVPTLLRWKTPQRLV-EDECLQADLVEMFF 118 (119)
T ss_pred CcccCCCEEEEEcCCceec-chhhcCHHHHHHhh
Confidence 998 999999996554322 22235666665554
No 138
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.24 E-value=2.9e-11 Score=96.66 Aligned_cols=89 Identities=33% Similarity=0.528 Sum_probs=65.8
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHH---HHhcCCCCCeEEEEEecChhh------------------hHHHHHhcC
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAA---SELSSHDPPVVLAKVDANEEA------------------NKELASQYE 104 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~---~~~~~~~~~v~~~~vd~~~~~------------------~~~~~~~~~ 104 (500)
.++++++++|+++||++|+.+.+.+.... ..++. ++.+..+++.... ..++.+++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence 47889999999999999999999888643 33332 2667777766432 235899999
Q ss_pred cccccEEEEEecCCceeeecCCCCCHHHHHHHH
Q 010824 105 IRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
|.++|++++++.+|+.+.++.|..+.++|.+++
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999997778888999999999998875
No 139
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.23 E-value=3.8e-11 Score=89.96 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=70.0
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHH
Q 010824 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIV 475 (500)
Q Consensus 396 ~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~ 475 (500)
.+..||++||++|+.+.+.+.+++..++. .+.+..+|++.+....+++++.++|++++ .| + .++.|..+.+++.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g-~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NG-D-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CC-E-EEEecCCCHHHHH
Confidence 46789999999999999999999998865 58999999999988888899999999976 33 3 4788999999999
Q ss_pred HHHHhh
Q 010824 476 DFIENN 481 (500)
Q Consensus 476 ~~i~~~ 481 (500)
++|++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 999864
No 140
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.22 E-value=2.3e-10 Score=99.87 Aligned_cols=91 Identities=11% Similarity=0.249 Sum_probs=72.9
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------------------hHHHHHhcC
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------------------NKELASQYE 104 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~ 104 (500)
.++++++|.||++||++|++..|.+.++.++ + +.+..|+.+.+. ...++..|+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~--~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~g 139 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 139 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc----C--CEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcC
Confidence 4789999999999999999999999887642 2 556666643321 112556789
Q ss_pred cccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 105 IRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+.++|+.++++.+|+...++.|..+.+.+.+++...+.
T Consensus 140 v~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 140 VYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999887663
No 141
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.21 E-value=6.6e-11 Score=94.63 Aligned_cols=99 Identities=20% Similarity=0.230 Sum_probs=73.6
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhcCCCCCeEEEEEecChhhhHHHHH--------hcC
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPE-Y--EKAASELSSHDPPVVLAKVDANEEANKELAS--------QYE 104 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~~~ 104 (500)
.+++.++.+..++|+++|.|+++||+.|+.+.+. | .++++.+... ++++.+|.+..++ +++ .|+
T Consensus 3 ~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~~~~--~~~~~~~~~~~~~~ 77 (124)
T cd02955 3 WGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREERPD--VDKIYMNAAQAMTG 77 (124)
T ss_pred CCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCcCcH--HHHHHHHHHHHhcC
Confidence 4566788899999999999999999999999763 3 2455565543 8999999887665 554 358
Q ss_pred cccccEEEEEecCCceeeecCCC-----CCHHHHHHHHHh
Q 010824 105 IRGFPTIKILRNGGKTIQEYKGP-----READGIVEYLKK 139 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g~-----~~~~~l~~~i~~ 139 (500)
+.++|+++|++++|+.+....+- .....+..++.+
T Consensus 78 ~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (124)
T cd02955 78 QGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEK 117 (124)
T ss_pred CCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHH
Confidence 99999999999988877544322 444555555543
No 142
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.18 E-value=1.9e-10 Score=94.71 Aligned_cols=87 Identities=18% Similarity=0.402 Sum_probs=65.2
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------------------
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------- 95 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------- 95 (500)
++.+.+...-.++++++|+||++||++|+...|.+.++++++++.+..+.+..|+.+...
T Consensus 6 ~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~ 85 (131)
T cd03009 6 NDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDR 85 (131)
T ss_pred cCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCH
Confidence 344444444447889999999999999999999999999998764334656655554321
Q ss_pred --hHHHHHhcCcccccEEEEEecCCceee
Q 010824 96 --NKELASQYEIRGFPTIKILRNGGKTIQ 122 (500)
Q Consensus 96 --~~~~~~~~~i~~~P~~~~~~~~~~~~~ 122 (500)
...++++|++.++|++++++.+|+.+.
T Consensus 86 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 86 ERRSRLNRTFKIEGIPTLIILDADGEVVT 114 (131)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCEEc
Confidence 134888999999999999997777543
No 143
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.16 E-value=3.4e-10 Score=115.56 Aligned_cols=100 Identities=21% Similarity=0.441 Sum_probs=80.7
Q ss_pred CccChhhhh----ccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCccc
Q 010824 37 DHSNFSDTV----SKHNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRG 107 (500)
Q Consensus 37 ~~~~~~~~~----~~~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~ 107 (500)
+.+++++.+ .++++++|+||++||++|+.+.+.. .++.+.+++ +.+.++|++++. ..+++++|++.+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChhhHHHHHHcCCCC
Confidence 345666655 4578999999999999999998865 566666642 789999988642 345999999999
Q ss_pred ccEEEEEecCCce--eeecCCCCCHHHHHHHHHhh
Q 010824 108 FPTIKILRNGGKT--IQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 108 ~P~~~~~~~~~~~--~~~~~g~~~~~~l~~~i~~~ 140 (500)
+|++++|+.+|+. ..++.|..+.+++.+++++.
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 9999999876676 36889999999999999874
No 144
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6e-10 Score=88.43 Aligned_cols=149 Identities=16% Similarity=0.274 Sum_probs=98.1
Q ss_pred CcchhHHHHHHHHHHHHhhhhcccccccccCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHH---HHHh
Q 010824 1 MASSRSILALVLTIACCMTAISAEESAESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKA---ASEL 77 (500)
Q Consensus 1 m~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~---~~~~ 77 (500)
|++...+.++++++++.++++.. +..+.+. + -++..++...+++.+++|-++.|+.|.++....... .+.+
T Consensus 1 ~mRvl~i~Lliis~fl~a~~s~~----ek~s~~~-~-~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEyl 74 (182)
T COG2143 1 VMRVLLIVLLIISLFLSACKSNN----EKRSNID-V-FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYL 74 (182)
T ss_pred CcchHHHHHHHHHHHHHHHhCCc----hhhhhhh-h-HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHH
Confidence 45555555555555555444331 1111111 1 134666777899999999999999999998765433 3344
Q ss_pred cCCCCCeEEEEEecChhh--------------hHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 78 SSHDPPVVLAKVDANEEA--------------NKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 78 ~~~~~~v~~~~vd~~~~~--------------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
.+ ++.++.++.+... ..++++.|+++++|+++||+..|+.+....|.+..+.+..-++-.-..
T Consensus 75 k~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 75 KE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred hh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 43 3888888765522 235999999999999999999999999999999999877666544433
Q ss_pred CccccCChhhHhhhh
Q 010824 144 ASAEIKSAEDASSFI 158 (500)
Q Consensus 144 ~~~~i~~~~~~~~~~ 158 (500)
......+.+++...+
T Consensus 152 ~ykd~~~dedf~kk~ 166 (182)
T COG2143 152 KYKDTKTDEDFTKKL 166 (182)
T ss_pred HHhhhccHHHHHHHH
Confidence 333333444444333
No 145
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.15 E-value=7.4e-11 Score=94.14 Aligned_cols=91 Identities=21% Similarity=0.378 Sum_probs=64.1
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-CCCCCCcCc--ceEEEEEcCCCceE---
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-PGDTFEVQG--YPTVFFRSASGKTV--- 463 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~~~i~~--~P~~~~~~~~~~~~--- 463 (500)
...+++++|.||++||++|+.+.|.+.+....... ...|+.+|++.++. ..+.+++.+ +|++++|+++|+..
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~--~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~ 93 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL--SHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEI 93 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh--cCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhh
Confidence 46789999999999999999999999997665433 23455566665542 335688876 99999997565532
Q ss_pred -EecCCCCHHHHHHHHHhhc
Q 010824 464 -PYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 464 -~~~g~~~~~~l~~~i~~~~ 482 (500)
...|..+.+.+.+.|....
T Consensus 94 ~~~~~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 94 INKKGNPNYKYFYSSAAQVT 113 (117)
T ss_pred ccCCCCccccccCCCHHHHH
Confidence 3446666666666655543
No 146
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=99.14 E-value=3.4e-10 Score=88.89 Aligned_cols=96 Identities=23% Similarity=0.472 Sum_probs=80.0
Q ss_pred cchhhhhcCCCceEEEEEeC----CCCCchHHHHHHHHHHHhhc-CceeEEEEEcccchhhHHhhcCCCCCC--CceEEE
Q 010824 258 PFVIKFFNSPNAKAMLFMNF----SSEGTEPIQSKYREVAEQYK-GQGISFLLGDLEASQGAFQYFGLQESQ--VPLIVI 330 (500)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~l~~va~~~~-~~~~~f~~~d~~~~~~~~~~~gi~~~~--~P~i~i 330 (500)
.|...++..+. ++++++. +.+..+.+...++++|++|+ ++ +.|+++|...+...++.||++..+ .|.++|
T Consensus 7 en~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk-i~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i 83 (111)
T cd03073 7 DNRAQFTKKPL--VVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK-LNFAVADKEDFSHELEEFGLDFSGGEKPVVAI 83 (111)
T ss_pred chHHHhccCCe--EEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe-EEEEEEcHHHHHHHHHHcCCCcccCCCCEEEE
Confidence 56777764444 5554433 55666899999999999999 79 999999999998899999999766 999999
Q ss_pred EeCCCCcc-CCCCC-ChhhHHHHHHHHh
Q 010824 331 QTNDGQKY-LKPNL-DADQIAPWVKEYK 356 (500)
Q Consensus 331 ~~~~~~~y-~~~~~-~~~~i~~fi~~~~ 356 (500)
.+.++++| +.+++ +.++|.+|+++++
T Consensus 84 ~~~~~~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 84 RTAKGKKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred EeCCCCccCCCcccCCHHHHHHHHHHhC
Confidence 99766899 88889 9999999999863
No 147
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.13 E-value=1.1e-09 Score=94.47 Aligned_cols=90 Identities=18% Similarity=0.371 Sum_probs=71.6
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------------------hhhHHHHHhcC
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------------------EANKELASQYE 104 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~~~~~~~~~ 104 (500)
.++++++|+||++||++|++..|.+.++++. + +.+..|+.+. ++...+.++|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~--~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD----G--LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc----C--CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4689999999999999999999999888653 2 4445454321 11123777889
Q ss_pred cccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 105 IRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 105 i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
+.++|+.++++.+|+...++.|..+.+.+.+++.+.+
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 9999999999877898899999999999999998876
No 148
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.12 E-value=7.8e-10 Score=93.55 Aligned_cols=87 Identities=14% Similarity=0.226 Sum_probs=69.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-----------hhHHHHHhcCc--ccccEEEEEecCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-----------ANKELASQYEI--RGFPTIKILRNGG 118 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~~~~~~~~~i--~~~P~~~~~~~~~ 118 (500)
+|.||++||++|++..|.+.++++++. +.+..|+.+.. ....+.+.|++ .++|+.++++.+|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 788999999999999999999999973 44555554432 12336778984 6999999999888
Q ss_pred cee-eecCCCCCHHHHHHHHHhhcCC
Q 010824 119 KTI-QEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 119 ~~~-~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
+.. ..+.|..+.+.+.+.+.+.+.-
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 875 5799999999999988887753
No 149
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=99.08 E-value=8.5e-10 Score=85.95 Aligned_cols=97 Identities=24% Similarity=0.344 Sum_probs=87.4
Q ss_pred ccccCChhhHhhhhc-cCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccCCCc
Q 010824 145 SAEIKSAEDASSFIG-EKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDEL 223 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 223 (500)
++.|++.++++.++. .+.+.+|++|.+.+++.++.|.++|..+|+++.|+++.+.++... +++..|++++++..++.
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~--~~~~~~~i~l~~~~~e~ 79 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKK--LGLKMNEVDFYEPFMEE 79 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHH--cCCCCCcEEEeCCCCCC
Confidence 577889999999999 899999999999999999999999999999999999999998888 78888999999986555
Q ss_pred c-cc-cCCCCHHHHHHHHHHcc
Q 010824 224 F-VD-FKDFKVDALEKFVEESS 243 (500)
Q Consensus 224 ~-~~-~~~~~~~~l~~~i~~~~ 243 (500)
. .| .|..+.+.|..||..+.
T Consensus 80 ~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 80 PVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CcccCCCCCCHHHHHHHHHHhc
Confidence 5 68 88889999999998764
No 150
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.07 E-value=9.7e-10 Score=89.44 Aligned_cols=97 Identities=22% Similarity=0.401 Sum_probs=73.8
Q ss_pred EEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecC-------------------hh
Q 010824 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN-------------------EE 94 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-------------------~~ 94 (500)
..++.+++......+++++|.||++||++|+.+.|.+..+++.+. +....+|-. .+
T Consensus 6 ~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-----VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 345556666666677999999999999999999999999887742 222222211 01
Q ss_pred hhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHH
Q 010824 95 ANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEY 136 (500)
Q Consensus 95 ~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 136 (500)
+..+++++|+|.++|++++++++| ....+.|..+.++|.+-
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 223499999999999999999887 77889999999988653
No 151
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.07 E-value=1.5e-09 Score=86.65 Aligned_cols=98 Identities=12% Similarity=0.273 Sum_probs=80.7
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec-
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPE-Y--EKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN- 116 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~-~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~- 116 (500)
++.+.+++++++|+|+++||+.|+.+... | ..+.+.++.. +.+..+|.+......++..|++.++|+++++++
T Consensus 10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~---~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~ 86 (114)
T cd02958 10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN---FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPR 86 (114)
T ss_pred HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC---EEEEEecCCCccHHHHHHHhCccCCCeEEEEeCc
Confidence 44455789999999999999999998753 3 3444555443 888999998766667999999999999999998
Q ss_pred CCceeeecCCCCCHHHHHHHHHhhc
Q 010824 117 GGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
+|+.+.+..|..+.+.+.+.+++..
T Consensus 87 ~g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 87 TGEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred cCcEeEEEcCCCCHHHHHHHHHHHH
Confidence 7899999999999999998888754
No 152
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.06 E-value=1.3e-09 Score=84.04 Aligned_cols=71 Identities=31% Similarity=0.600 Sum_probs=58.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----------------------hHHHHHhcC
Q 010824 48 HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----------------------NKELASQYE 104 (500)
Q Consensus 48 ~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~~~ 104 (500)
|++++|+||++||++|++..|.+.++.+++++ +.++.++.|+++.+. ...+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999985 455888888877642 224788899
Q ss_pred cccccEEEEEecCCc
Q 010824 105 IRGFPTIKILRNGGK 119 (500)
Q Consensus 105 i~~~P~~~~~~~~~~ 119 (500)
|.++|++++++++|+
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 999999999998875
No 153
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.06 E-value=1.1e-09 Score=89.51 Aligned_cols=90 Identities=14% Similarity=0.317 Sum_probs=68.4
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------------------hhhH
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------------------EANK 97 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~~ 97 (500)
..+.....++++++|+||++||++|+...|.+.++.+.+. +.+..|+.+. +...
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 90 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQGR-----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG 90 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc
Confidence 3344444468899999999999999999999999987751 4555554211 1223
Q ss_pred HHHHhcCcccccEEEEEecCCceeeecCCCCCHHHH
Q 010824 98 ELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGI 133 (500)
Q Consensus 98 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l 133 (500)
.+++.|++.++|+.++++.+|+...++.|..+.+.|
T Consensus 91 ~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 91 RVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred hHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 388899999999888998778988999998887654
No 154
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=99.06 E-value=9e-10 Score=86.01 Aligned_cols=95 Identities=24% Similarity=0.512 Sum_probs=85.1
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEecc-----
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKP----- 219 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~----- 219 (500)
+.+|++.++++.++..++..+|++|.+..+..++.|.++|..+++++.|+++.+.+++.+ +++ .|++++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~--~~~-~~~ivl~~p~~~~~ 78 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEK--YGY-GEGVVLFRPPRLSN 78 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHh--cCC-CCceEEEechhhhc
Confidence 567889999999999999999999999899999999999999999999999999999888 777 789999954
Q ss_pred -CCCcc-cccCCCCHHHHHHHHHHc
Q 010824 220 -FDELF-VDFKDFKVDALEKFVEES 242 (500)
Q Consensus 220 -~~~~~-~~~~~~~~~~l~~~i~~~ 242 (500)
.++.. .|.|+++.++|.+||..+
T Consensus 79 k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 79 KFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred ccCcccccccCcCCHHHHHHHHHhh
Confidence 45555 699999999999999875
No 155
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=9.7e-10 Score=80.29 Aligned_cols=73 Identities=22% Similarity=0.411 Sum_probs=57.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCC-CCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGP-REA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~-~~~ 130 (500)
-|.||++||++|+.+.|.++++++++... +.+..+| +.. .+.+|++.++|++++ +| +.. +.|. .+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~~~v~---~~~--~a~~~~v~~vPti~i--~G-~~~--~~G~~~~~ 68 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEFEKVT---DMN--EILEAGVTATPGVAV--DG-ELV--IMGKIPSK 68 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEEEEeC---CHH--HHHHcCCCcCCEEEE--CC-EEE--EEeccCCH
Confidence 37899999999999999999999998543 8888887 223 578899999999999 44 554 7775 455
Q ss_pred HHHHHHH
Q 010824 131 DGIVEYL 137 (500)
Q Consensus 131 ~~l~~~i 137 (500)
+.+.+++
T Consensus 69 ~~l~~~l 75 (76)
T TIGR00412 69 EEIKEIL 75 (76)
T ss_pred HHHHHHh
Confidence 7777765
No 156
>PHA02125 thioredoxin-like protein
Probab=99.05 E-value=1.2e-09 Score=79.71 Aligned_cols=70 Identities=29% Similarity=0.578 Sum_probs=55.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCC-CCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGP-REA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~-~~~ 130 (500)
+++||++||++|+.+.|.+.++. +.++.||++...+ ++++|+|.++||++ . |+...++.|. .+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~--l~~~~~v~~~PT~~---~-g~~~~~~~G~~~~~ 66 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVE--LTAKHHIRSLPTLV---N-TSTLDRFTGVPRNV 66 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHH--HHHHcCCceeCeEE---C-CEEEEEEeCCCCcH
Confidence 78999999999999999987542 4578888877766 99999999999997 2 3566678884 444
Q ss_pred HHHHHH
Q 010824 131 DGIVEY 136 (500)
Q Consensus 131 ~~l~~~ 136 (500)
..|.+-
T Consensus 67 ~~l~~~ 72 (75)
T PHA02125 67 AELKEK 72 (75)
T ss_pred HHHHHH
Confidence 565543
No 157
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=99.03 E-value=1.6e-09 Score=83.91 Aligned_cols=95 Identities=33% Similarity=0.606 Sum_probs=85.9
Q ss_pred cccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccCCCcc-
Q 010824 146 AEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDELF- 224 (500)
Q Consensus 146 ~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~- 224 (500)
.+|++.++++.++..+..++|++|.+.++..+..|.++|..+++.+.|+.+.+.+++++ ++.+.|++++|++.++..
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~--~~~~~~~i~l~~~~~~~~~ 79 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKK--LKVKPGSVVLFKPFEEEPV 79 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHH--cCCCCCceEEeCCcccCCc
Confidence 56788999999999999999999999889999999999999999999999999999888 778889999999875555
Q ss_pred cccCCCCHHHHHHHHHHc
Q 010824 225 VDFKDFKVDALEKFVEES 242 (500)
Q Consensus 225 ~~~~~~~~~~l~~~i~~~ 242 (500)
.|.|..+.++|.+||..+
T Consensus 80 ~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 80 EYDGEFTEESLVEFIKDN 97 (97)
T ss_pred cCCCCCCHHHHHHHHHhC
Confidence 799999999999999753
No 158
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.03 E-value=1.8e-09 Score=88.80 Aligned_cols=76 Identities=20% Similarity=0.475 Sum_probs=59.9
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----------------------hHHHHHh
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----------------------NKELASQ 102 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~ 102 (500)
-++++++|+||++||++|+...|.+.++++.+++.+..+.+..|+.+... ...+.+.
T Consensus 15 ~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 94 (132)
T cd02964 15 LEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQ 94 (132)
T ss_pred hCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHH
Confidence 36899999999999999999999999999998764234666666554421 1247778
Q ss_pred cCcccccEEEEEecCCcee
Q 010824 103 YEIRGFPTIKILRNGGKTI 121 (500)
Q Consensus 103 ~~i~~~P~~~~~~~~~~~~ 121 (500)
|++.++|++++++.+|+.+
T Consensus 95 ~~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 95 FKVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred cCCCCCCEEEEECCCCCEE
Confidence 9999999999999776654
No 159
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.02 E-value=1.8e-09 Score=86.61 Aligned_cols=88 Identities=30% Similarity=0.551 Sum_probs=70.6
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh---------------------h
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE---------------------A 95 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~ 95 (500)
+.+.+...-..+++++++||++||++|+...+.+.++.+++.+ +++.++.|+++.. .
T Consensus 8 ~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~ 85 (116)
T cd02966 8 DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDP 85 (116)
T ss_pred CCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcC
Confidence 3334444433578999999999999999999999999999863 3488999998874 0
Q ss_pred hHHHHHhcCcccccEEEEEecCCceeeecCC
Q 010824 96 NKELASQYEIRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 96 ~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 126 (500)
...+++.|++.++|++++++++|+....+.|
T Consensus 86 ~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 86 DGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 1238999999999999999988888888776
No 160
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.01 E-value=1.8e-09 Score=99.34 Aligned_cols=91 Identities=16% Similarity=0.207 Sum_probs=72.0
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------hHHHHHhcCcccccEEEEEec-
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------NKELASQYEIRGFPTIKILRN- 116 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------~~~~~~~~~i~~~P~~~~~~~- 116 (500)
.++++||+||++||++|+.+.|.+..+++++. +.+..|+.+... ...+++++||.++|+++++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 47899999999999999999999999999974 344444443321 123899999999999999998
Q ss_pred CCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 117 GGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+|.......|..+.+.|.+.+.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 44444556799999999999887654
No 161
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.00 E-value=2.5e-09 Score=87.90 Aligned_cols=76 Identities=20% Similarity=0.437 Sum_probs=60.6
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCC-----CCCeEEEEEecChhh-----------------------hHH
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSH-----DPPVVLAKVDANEEA-----------------------NKE 98 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~-----~~~v~~~~vd~~~~~-----------------------~~~ 98 (500)
++++++|+|||+||++|++..|.+.++++++++. ..++.+..|+.+... ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 6899999999999999999999999999887653 124777777755421 124
Q ss_pred HHHhcCcccccEEEEEecCCceee
Q 010824 99 LASQYEIRGFPTIKILRNGGKTIQ 122 (500)
Q Consensus 99 ~~~~~~i~~~P~~~~~~~~~~~~~ 122 (500)
++++|++.++|++++++.+|+.+.
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEe
Confidence 788899999999999998877643
No 162
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.00 E-value=9.2e-10 Score=80.41 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=57.7
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCC-CCHHHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGD-RTKEDIV 475 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~-~~~~~l~ 475 (500)
.|.||++||++|+.+.|.+++++++++. .+.++.+| ..+ ...++++.++|++++ +++.. +.|. .+.+.+.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~--~~~-~a~~~~v~~vPti~i---~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT--DMN-EILEAGVTATPGVAV---DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC--CHH-HHHHcCCCcCCEEEE---CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999999875 58888887 222 244599999999998 34433 7774 5668888
Q ss_pred HHHH
Q 010824 476 DFIE 479 (500)
Q Consensus 476 ~~i~ 479 (500)
++++
T Consensus 73 ~~l~ 76 (76)
T TIGR00412 73 EILK 76 (76)
T ss_pred HHhC
Confidence 7763
No 163
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=3.5e-10 Score=108.98 Aligned_cols=109 Identities=29% Similarity=0.528 Sum_probs=88.4
Q ss_pred CCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC-CceEEEEEeC--CCCCCCCCCCCcCcc
Q 010824 374 NEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADVVIAKFDA--TANDIPGDTFEVQGY 450 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~id~--~~~~~~~~~~~i~~~ 450 (500)
..++..|+.++|.+.+..+.+..+|-||++||++|+.+.|.|++++..+... .-+.++.||| +.|..+|+.++|+++
T Consensus 38 ~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~ 117 (606)
T KOG1731|consen 38 DDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGY 117 (606)
T ss_pred CCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCC
Confidence 3679999999999999888889999999999999999999999999888654 3577889999 456788999999999
Q ss_pred eEEEEEcCCCce----EEecCCCCHHHHHHHHHhhc
Q 010824 451 PTVFFRSASGKT----VPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 451 P~~~~~~~~~~~----~~~~g~~~~~~l~~~i~~~~ 482 (500)
|++.+|+.+... ..+.|.-...++.+.+.+.+
T Consensus 118 Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 118 PTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred ceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 999999887443 23445555566666655543
No 164
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.98 E-value=3.6e-09 Score=104.71 Aligned_cols=90 Identities=16% Similarity=0.320 Sum_probs=71.2
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC----------------------------CCCCCC
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA----------------------------TANDIP 441 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~----------------------------~~~~~~ 441 (500)
++.+++++|+|||+||++|+...|.|.++++.++.. ++.++.|.. +.+..+
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~-~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS-SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC-CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 357889999999999999999999999999988632 466655543 222233
Q ss_pred CCCCCcCcceEEEEEcCCCce-EEecCCCCHHHHHHHHHh
Q 010824 442 GDTFEVQGYPTVFFRSASGKT-VPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 442 ~~~~~i~~~P~~~~~~~~~~~-~~~~g~~~~~~l~~~i~~ 480 (500)
.+.|++.++|+++++.+++++ .++.|..+.++|.++|+.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 456899999999888766664 478899999999999984
No 165
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.96 E-value=5.3e-10 Score=89.31 Aligned_cols=86 Identities=24% Similarity=0.468 Sum_probs=61.8
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHH---HHcCCCCceEEEEEeCCCCC--------------------CCCCCCCc
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVA---VSYQNDADVVIAKFDATAND--------------------IPGDTFEV 447 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~---~~~~~~~~~~~~~id~~~~~--------------------~~~~~~~i 447 (500)
.++++++++|+++||++|+.+.+.+.... ..++. ++.++.++++... .+.+.+++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 46889999999999999999999888643 34433 5777777776532 23456899
Q ss_pred CcceEEEEEcCCCc-eEEecCCCCHHHHHHHH
Q 010824 448 QGYPTVFFRSASGK-TVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 448 ~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i 478 (500)
.++|++++++.+|+ +.++.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 99999999976556 55889999999998875
No 166
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.95 E-value=4.2e-09 Score=83.99 Aligned_cols=110 Identities=10% Similarity=0.167 Sum_probs=93.0
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECC--CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEE
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAP--WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVF 454 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~--~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~ 454 (500)
...++..++++.+ ......+++|.+. .++.+....=++.+++..+.+ .++.++++|++.+..+..+|+|.++||++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 4457778899988 5555666666554 478888888899999999964 25999999999999999999999999999
Q ss_pred EEcCCCceEEecCCCCHHHHHHHHHhhcCCCCCC
Q 010824 455 FRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPK 488 (500)
Q Consensus 455 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 488 (500)
+|++|+.+.++.|..+.+++.++|+++++.+.+.
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~~ 130 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHHHhcCcCcc
Confidence 9988877889999999999999999998876554
No 167
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.94 E-value=1.8e-09 Score=110.25 Aligned_cols=98 Identities=27% Similarity=0.477 Sum_probs=78.1
Q ss_pred eccchhhhhh---cCCCeEEEEEECCCChhHhhhhHHH---HHHHHHcCCCCceEEEEEeCCCCCC----CCCCCCcCcc
Q 010824 381 VADSLQDMVF---NSGKNVLLEFYAPWCGHCKKLAPIL---DEVAVSYQNDADVVIAKFDATANDI----PGDTFEVQGY 450 (500)
Q Consensus 381 ~~~~~~~~~~---~~~~~~~v~f~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~ 450 (500)
+.+++++.+. ..+|+++|+||++||++|+.+.+.. .++.+.++ ++.++++|+++++. ..++|++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 4566666663 3478999999999999999998864 56666665 48899999987643 3467999999
Q ss_pred eEEEEEcCCCce---EEecCCCCHHHHHHHHHhh
Q 010824 451 PTVFFRSASGKT---VPYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 451 P~~~~~~~~~~~---~~~~g~~~~~~l~~~i~~~ 481 (500)
|++++|+++++. .++.|..+.+++.+++++.
T Consensus 536 Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 536 PTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 999999866553 4788999999999999874
No 168
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.93 E-value=2.5e-08 Score=102.56 Aligned_cols=185 Identities=16% Similarity=0.221 Sum_probs=138.6
Q ss_pred CCceEE-EEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCcc---CCCC
Q 010824 267 PNAKAM-LFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQKY---LKPN 342 (500)
Q Consensus 267 ~~~~~~-l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~y---~~~~ 342 (500)
..|+.+ +|++.+++.+.+..+.+++++ ...++ +++...|.....+..+.+|+. ..|++++++.++..+ |.|-
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~~~~~~~~~~~~~~~v~--~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEAVNRGEEPESETLPKIT--KLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEEeccccchhhHhhcCCC--cCCEEEEEeCCCcccceEEEec
Confidence 456544 666666667888999999998 44566 888888877778888999988 889999997655333 5688
Q ss_pred CChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCCeE-EEEEECCCChhHhhhhHHHHHHHHH
Q 010824 343 LDADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNV-LLEFYAPWCGHCKKLAPILDEVAVS 421 (500)
Q Consensus 343 ~~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~~~~~ 421 (500)
+.-..+..||..+++-. +.-..|+.+..+. +..-++++ +-.|.+++|++|......+.+++..
T Consensus 441 P~G~Ef~s~i~~i~~~~---------------~~~~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 441 PSGHELNSFILALYNAA---------------GPGQPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CccHhHHHHHHHHHHhc---------------CCCCCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 88888999998887521 1122344444443 33445565 5567899999999888888888877
Q ss_pred cCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHH
Q 010824 422 YQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 422 ~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
.. ++..-.+|....+...++|++.++|++++= ++ ..+.|..+.+++.+||
T Consensus 505 ~~---~i~~~~i~~~~~~~~~~~~~v~~vP~~~i~---~~-~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 505 NP---NVEAEMIDVSHFPDLKDEYGIMSVPAIVVD---DQ-QVYFGKKTIEEMLELI 554 (555)
T ss_pred CC---CceEEEEECcccHHHHHhCCceecCEEEEC---CE-EEEeeCCCHHHHHHhh
Confidence 54 588888999999999988999999999763 33 3466888999999887
No 169
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.93 E-value=1.4e-08 Score=86.61 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=71.4
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEE------EEEecChh---------------
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVL------AKVDANEE--------------- 94 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~------~~vd~~~~--------------- 94 (500)
++-+.+...--.||+.+|.||+.||++|....|.+..+..+ + +.+ ..||.+..
T Consensus 47 ~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~--~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 47 TVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA----K--FPPVKYQTTTIINADDAIVGTGMFVKSSAKKG 120 (184)
T ss_pred ccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHHc----C--CCcccccceEEEECccchhhHHHHHHHHHHHh
Confidence 34445666666799999999999999999999999998543 2 333 44443321
Q ss_pred ------------hhHHHHHhcCcccccEE-EEEecCCceeeecCCCCCHHHHHHH
Q 010824 95 ------------ANKELASQYEIRGFPTI-KILRNGGKTIQEYKGPREADGIVEY 136 (500)
Q Consensus 95 ------------~~~~~~~~~~i~~~P~~-~~~~~~~~~~~~~~g~~~~~~l~~~ 136 (500)
+...+...+++.++|+. ++++.+|+....+.|..+.+++.+.
T Consensus 121 ~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 121 KKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTV 175 (184)
T ss_pred cccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHH
Confidence 12236668899999888 8999999999999999988887663
No 170
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.93 E-value=1.2e-08 Score=81.29 Aligned_cols=105 Identities=11% Similarity=0.145 Sum_probs=88.2
Q ss_pred EcCccChhhhhccCCeEEEEEECC--CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEE
Q 010824 35 TLDHSNFSDTVSKHNFIVVEFYAP--WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112 (500)
Q Consensus 35 ~l~~~~~~~~~~~~~~~lv~f~~~--~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~ 112 (500)
.++..+++..+..+...+++|-+. .++.+....=.+.++++++.+ .++.++.||++.++. ++.+|||.++||++
T Consensus 21 ~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~--LA~~fgV~siPTLl 96 (132)
T PRK11509 21 PVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEA--IGDRFGVFRFPATL 96 (132)
T ss_pred ccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHH--HHHHcCCccCCEEE
Confidence 356678899998887777777643 456666677789999999853 239999999999988 99999999999999
Q ss_pred EEecCCceeeecCCCCCHHHHHHHHHhhcCCC
Q 010824 113 ILRNGGKTIQEYKGPREADGIVEYLKKQSGPA 144 (500)
Q Consensus 113 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 144 (500)
+|++| +.+.++.|..+.+.+.+||.+.+..+
T Consensus 97 ~FkdG-k~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 97 VFTGG-NYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEECC-EEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 99986 88899999999999999999988654
No 171
>PHA02125 thioredoxin-like protein
Probab=98.93 E-value=2.1e-09 Score=78.40 Aligned_cols=71 Identities=20% Similarity=0.436 Sum_probs=55.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCC-CCHHHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGD-RTKEDIV 475 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~-~~~~~l~ 475 (500)
+++||++||++|+.+.|.|.++. +.++.+|.+.+..+.++|++.++|+++ .|....++.|. .+..+|.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~ 70 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELK 70 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHH
Confidence 78999999999999999987652 568899999888888889999999997 34445577774 4456665
Q ss_pred HHH
Q 010824 476 DFI 478 (500)
Q Consensus 476 ~~i 478 (500)
+-|
T Consensus 71 ~~~ 73 (75)
T PHA02125 71 EKL 73 (75)
T ss_pred HHh
Confidence 543
No 172
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.92 E-value=4.6e-10 Score=95.80 Aligned_cols=111 Identities=24% Similarity=0.546 Sum_probs=95.4
Q ss_pred ccccccccCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHh
Q 010824 23 AEESAESKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQ 102 (500)
Q Consensus 23 ~~~~~~~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~ 102 (500)
+...+...+.+..++++|+...+... |+|+|+++||+.|+...+.|...+.--.+.+ |.++.||.+-++. +..+
T Consensus 16 a~~~~~r~s~~~~~~eenw~~~l~ge--wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~npg--LsGR 89 (248)
T KOG0913|consen 16 ADVTPRRSSKLTRIDEENWKELLTGE--WMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTNPG--LSGR 89 (248)
T ss_pred CCcCccccceeEEecccchhhhhchH--HHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEeccc--ccee
Confidence 33344445578899999999998443 8999999999999999999999887666544 9999999999999 9999
Q ss_pred cCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 103 YEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 103 ~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
|-+...|+|+-..+| ...+|.|.++..++++|+...-
T Consensus 90 F~vtaLptIYHvkDG--eFrrysgaRdk~dfisf~~~r~ 126 (248)
T KOG0913|consen 90 FLVTALPTIYHVKDG--EFRRYSGARDKNDFISFEEHRE 126 (248)
T ss_pred eEEEecceEEEeecc--ccccccCcccchhHHHHHHhhh
Confidence 999999999999988 6789999999999999998543
No 173
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.91 E-value=1.7e-08 Score=90.09 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=79.7
Q ss_pred EEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHHH-Hhc
Q 010824 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKELA-SQY 103 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~-~~~ 103 (500)
..++.+.+...-.++++++|.||++||+.|....|.+.++++++++.| +.+..|+|+. ....+++ +++
T Consensus 85 ~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 85 KDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred ECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 345555444343467999999999999999999999999999998755 7788888741 1112233 232
Q ss_pred C----------------------------------cccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 104 E----------------------------------IRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 104 ~----------------------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
+ +...|+.++++.+|+.+.+|.|..+.+.+.+.|++.+
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 2 1235889999999999999999999999999988765
No 174
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.90 E-value=8.2e-09 Score=86.02 Aligned_cols=85 Identities=15% Similarity=0.350 Sum_probs=63.2
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC------------CC-CCCC---CcCcceEEEEE
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND------------IP-GDTF---EVQGYPTVFFR 456 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------~~-~~~~---~i~~~P~~~~~ 456 (500)
.+..+|+||++||++|++..|.+++++++++ +.++.|+.+... .. ...+ ++.++|+.+++
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI 125 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV 125 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence 5566999999999999999999999998874 334444444321 11 1223 67899999999
Q ss_pred cCCCc-eE-EecCCCCHHHHHHHHHhh
Q 010824 457 SASGK-TV-PYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 457 ~~~~~-~~-~~~g~~~~~~l~~~i~~~ 481 (500)
++++. +. ++.|..+.+++.+.|.+.
T Consensus 126 D~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 126 NVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred eCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 87655 33 578999999999888764
No 175
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.90 E-value=9.4e-09 Score=82.26 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=57.2
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHH-HH--HHHHHcCCCCceEEEEEeCCCCCCCCC--------CCCcCcceEEEEEcC
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPI-LD--EVAVSYQNDADVVIAKFDATANDIPGD--------TFEVQGYPTVFFRSA 458 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~-~~--~~~~~~~~~~~~~~~~id~~~~~~~~~--------~~~i~~~P~~~~~~~ 458 (500)
...+|+++|+|+++||+.|+.+.+. +. +++..++. ++.++++|.+.++...+ .+++.++|+++++.+
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~ 89 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTP 89 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 3779999999999999999999873 32 45665544 69999999988766543 257889999999988
Q ss_pred CCceE
Q 010824 459 SGKTV 463 (500)
Q Consensus 459 ~~~~~ 463 (500)
+++++
T Consensus 90 ~G~~~ 94 (124)
T cd02955 90 DLKPF 94 (124)
T ss_pred CCCEE
Confidence 87755
No 176
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.89 E-value=5.8e-09 Score=95.98 Aligned_cols=88 Identities=19% Similarity=0.314 Sum_probs=69.5
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----------CCCCCCCCcCcceEEEEEcC-C
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----------DIPGDTFEVQGYPTVFFRSA-S 459 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------~~~~~~~~i~~~P~~~~~~~-~ 459 (500)
.++.++|+||++||++|+.+.|.++.++..++ +.+..|+++.+ ....+++++.++|+++++++ |
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~ 240 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDP 240 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCC
Confidence 36799999999999999999999999999875 44444554432 23445799999999999987 4
Q ss_pred CceE-EecCCCCHHHHHHHHHhhcC
Q 010824 460 GKTV-PYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 460 ~~~~-~~~g~~~~~~l~~~i~~~~~ 483 (500)
+.+. ...|..+.++|.+.|.....
T Consensus 241 ~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 241 NQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5554 35588999999999987765
No 177
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.89 E-value=9.1e-09 Score=80.43 Aligned_cols=97 Identities=26% Similarity=0.484 Sum_probs=83.5
Q ss_pred CccccCChhhHhhhhccC-CeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEecc---
Q 010824 144 ASAEIKSAEDASSFIGEK-KVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKP--- 219 (500)
Q Consensus 144 ~~~~i~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~--- 219 (500)
++.+|++.++++.++... ...+|++|.+..+..++.|.++|..+++++.|+++.+.++..+ ++++.|.+++||+
T Consensus 1 ~v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~--~~~~~~~vvl~rp~~~ 78 (107)
T cd03068 1 PSKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKS--LKVSPGQLVVFQPEKF 78 (107)
T ss_pred CceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHh--cCCCCCceEEECcHHH
Confidence 357888999999999887 9999999999888899999999999999999999999988888 7888899999954
Q ss_pred ---CCCcc-cccCC-CCHHH-HHHHHHHc
Q 010824 220 ---FDELF-VDFKD-FKVDA-LEKFVEES 242 (500)
Q Consensus 220 ---~~~~~-~~~~~-~~~~~-l~~~i~~~ 242 (500)
.+++. .|.|. .+.++ |..||+.|
T Consensus 79 ~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 79 QSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred hhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 45555 78888 67755 99999764
No 178
>smart00594 UAS UAS domain.
Probab=98.89 E-value=8.6e-09 Score=83.16 Aligned_cols=94 Identities=11% Similarity=0.240 Sum_probs=75.4
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecC
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
++.+.+++|+++|+|+++||+.|+.+.... ..+.+.++. ++.+..+|....+..+++.+|++.++|+++++.+.
T Consensus 20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~ 96 (122)
T smart00594 20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPR 96 (122)
T ss_pred HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecC
Confidence 344457889999999999999999987532 233444443 38898999988888889999999999999999876
Q ss_pred C-----ceeeecCCCCCHHHHHHHH
Q 010824 118 G-----KTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 118 ~-----~~~~~~~g~~~~~~l~~~i 137 (500)
| ..+.+..|..+.+.+.+++
T Consensus 97 ~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 97 TGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CCceeEEEeccccCCCCHHHHHHhh
Confidence 5 3467899999999998876
No 179
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.88 E-value=1.2e-08 Score=88.06 Aligned_cols=88 Identities=27% Similarity=0.412 Sum_probs=67.8
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC-----------------------CCCCCCCCCc
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA-----------------------NDIPGDTFEV 447 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------------------~~~~~~~~~i 447 (500)
..+++++|+||++||++|+.+.|.+.++... ++.++.++.+. +....+.|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 3578999999999999999999999888653 35555555421 2233446888
Q ss_pred CcceEEEEEcCCCc-eEEecCCCCHHHHHHHHHhhcC
Q 010824 448 QGYPTVFFRSASGK-TVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 448 ~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
.++|+.++++++|+ ..++.|..+.+++.++|++.++
T Consensus 136 ~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 136 YGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAME 172 (173)
T ss_pred eeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHhh
Confidence 99998888876676 4477899999999999998774
No 180
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.86 E-value=8.6e-09 Score=89.98 Aligned_cols=89 Identities=22% Similarity=0.389 Sum_probs=69.5
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-----------------------CCCCCCcC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-----------------------PGDTFEVQ 448 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------------~~~~~~i~ 448 (500)
.+++++|+||++||++|++..|.+.++... ++.++.++.+.+.. ....|++.
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVY 141 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCC
Confidence 578999999999999999999999988642 46677777543211 12257899
Q ss_pred cceEEEEEcCCCc-eEEecCCCCHHHHHHHHHhhcCCC
Q 010824 449 GYPTVFFRSASGK-TVPYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 449 ~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
++|+.++++++++ ..++.|..+.+++.++|+..+.+.
T Consensus 142 ~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~~~ 179 (185)
T PRK15412 142 GAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWEKY 179 (185)
T ss_pred cCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999987777 447789999999999998877543
No 181
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.86 E-value=2e-08 Score=87.10 Aligned_cols=102 Identities=26% Similarity=0.512 Sum_probs=78.9
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC------------------
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN------------------ 438 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------------------ 438 (500)
+..++++.+.-.- -.+++++|+||++||+.|+...+.+.++++++++. ++.++.++++..
T Consensus 46 ~~~~~g~~~~l~~-~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~ 123 (173)
T PRK03147 46 LTDLEGKKIELKD-LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPVA 123 (173)
T ss_pred eecCCCCEEeHHH-cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceEE
Confidence 4445555443222 24688999999999999999999999999998753 577777776532
Q ss_pred ----CCCCCCCCcCcceEEEEEcCCCceE-EecCCCCHHHHHHHHHh
Q 010824 439 ----DIPGDTFEVQGYPTVFFRSASGKTV-PYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 439 ----~~~~~~~~i~~~P~~~~~~~~~~~~-~~~g~~~~~~l~~~i~~ 480 (500)
....+.+++..+|+++++++++++. .+.|..+.+++.+++++
T Consensus 124 ~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 124 IDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred ECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 3345678999999999998888865 77899999999999874
No 182
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.85 E-value=2.1e-08 Score=81.82 Aligned_cols=79 Identities=14% Similarity=0.313 Sum_probs=64.0
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh-------------------------hhhHHHHH
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-------------------------EANKELAS 101 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~~~~~~ 101 (500)
++++++|+||++||+.|....|.+.+++++++..+ +.+..|+... ++...+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 67899999999999999999999999999998643 6677775421 11234677
Q ss_pred hcCcccccEEEEEecCCceeeecCCC
Q 010824 102 QYEIRGFPTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 102 ~~~i~~~P~~~~~~~~~~~~~~~~g~ 127 (500)
.|++.++|+.++++.+|+....+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 78999999999998888888888774
No 183
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.85 E-value=8.7e-09 Score=73.58 Aligned_cols=57 Identities=26% Similarity=0.434 Sum_probs=50.0
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEE
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~ 113 (500)
-++.|+++||++|+.+.+.++++++.. +++.+..+|.+.+++ +++++|+.++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~~--l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFPD--LADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCHh--HHHHcCCcccCEEEE
Confidence 378899999999999999999997653 348999999988777 999999999999976
No 184
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.83 E-value=6.6e-09 Score=85.50 Aligned_cols=76 Identities=26% Similarity=0.499 Sum_probs=58.8
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC-CceEEEEEeCCCCC-------------------------CCCCCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADVVIAKFDATAND-------------------------IPGDTF 445 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~-------------------------~~~~~~ 445 (500)
.++.++|+||++||++|+...|.++++.+.+++. .++.++.++++.++ ...+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 3689999999999999999999999999888653 35666666665432 122358
Q ss_pred CcCcceEEEEEcCCCceEEecC
Q 010824 446 EVQGYPTVFFRSASGKTVPYEG 467 (500)
Q Consensus 446 ~i~~~P~~~~~~~~~~~~~~~g 467 (500)
++.++|++++++++++++...+
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 8999999999988887664443
No 185
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.83 E-value=7e-09 Score=85.29 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=59.8
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC------CceEEEEEeCCCCCC-------------------------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND------ADVVIAKFDATANDI------------------------- 440 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~------~~~~~~~id~~~~~~------------------------- 440 (500)
.+++++|+|||+||++|+++.|.|.++...++++ .++.++.|+.+.+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999988776432 258888888765311
Q ss_pred CCCCCCcCcceEEEEEcCCCceEEecC
Q 010824 441 PGDTFEVQGYPTVFFRSASGKTVPYEG 467 (500)
Q Consensus 441 ~~~~~~i~~~P~~~~~~~~~~~~~~~g 467 (500)
+.+.|++.++|+.++++++|+++.-.|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 123577899999999998888775554
No 186
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.82 E-value=3.2e-08 Score=108.18 Aligned_cols=94 Identities=15% Similarity=0.371 Sum_probs=78.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecC---h----------------------hhhHHHHH
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN---E----------------------EANKELAS 101 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~---~----------------------~~~~~~~~ 101 (500)
++++++|+||++||++|+...|.++++++++++++ +.++.|.+. . +....+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 68999999999999999999999999999997643 667666421 1 11224778
Q ss_pred hcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 102 QYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 102 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+|+|.++|++++++.+|+.+.++.|....+.|.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 99999999999998777998999999999999999987653
No 187
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.82 E-value=1.5e-08 Score=99.24 Aligned_cols=105 Identities=20% Similarity=0.344 Sum_probs=84.6
Q ss_pred EEcCcc-ChhhhhccCC--eEEEEEECCCChhhhhhhHHHH-HHHHHhcCCCCCeEEEEEecChhhhH--HHHHhcCccc
Q 010824 34 LTLDHS-NFSDTVSKHN--FIVVEFYAPWCGHCKKLAPEYE-KAASELSSHDPPVVLAKVDANEEANK--ELASQYEIRG 107 (500)
Q Consensus 34 ~~l~~~-~~~~~~~~~~--~~lv~f~~~~c~~C~~~~~~~~-~~~~~~~~~~~~v~~~~vd~~~~~~~--~~~~~~~i~~ 107 (500)
..++.. .+++.+.+++ +++++||++||-.||.+++..- +.....+ -.+++..++|.+++..+ ++-++||+-+
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~--~~~~vlLqaDvT~~~p~~~~lLk~~~~~G 534 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA--LQDVVLLQADVTANDPAITALLKRLGVFG 534 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh--cCCeEEEEeeecCCCHHHHHHHHHcCCCC
Confidence 345555 7888887777 9999999999999999987554 3333332 23499999999886543 4778999999
Q ss_pred ccEEEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 108 FPTIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
.|++++|+.+|+......|..+.+.+.+++++.
T Consensus 535 ~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 535 VPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 999999998888877899999999999999875
No 188
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.82 E-value=9.3e-09 Score=82.00 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=57.7
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHHH---HHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYE---KAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~---~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
+.++.+..++|+++|+|++.||++|+.+...+- .+.+.++.. ++.+.++.+.... -....+ .++|+++|++
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~---Fv~V~l~~d~td~--~~~~~g-~~vPtivFld 87 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED---FIMLNLVHETTDK--NLSPDG-QYVPRIMFVD 87 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC---eEEEEEEeccCCC--CcCccC-cccCeEEEEC
Confidence 345666689999999999999999999987532 333333332 6666676543211 111234 6899999999
Q ss_pred cCCceeeecCCCC
Q 010824 116 NGGKTIQEYKGPR 128 (500)
Q Consensus 116 ~~~~~~~~~~g~~ 128 (500)
.+|+.+.+..|..
T Consensus 88 ~~g~vi~~i~Gy~ 100 (130)
T cd02960 88 PSLTVRADITGRY 100 (130)
T ss_pred CCCCCcccccccc
Confidence 9888888777754
No 189
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.82 E-value=2.5e-08 Score=79.82 Aligned_cols=71 Identities=21% Similarity=0.377 Sum_probs=47.7
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEE-ecChhhhHH-----------------HHHhcCcccc
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV-DANEEANKE-----------------LASQYEIRGF 108 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~v-d~~~~~~~~-----------------~~~~~~i~~~ 108 (500)
++++++|.||++||++|+...|.+.++++.+.+. +.+..+ +.+.+...+ +.++|++.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 4789999999999999999999999998887543 444444 322222222 4444555566
Q ss_pred cEEEEEecCCce
Q 010824 109 PTIKILRNGGKT 120 (500)
Q Consensus 109 P~~~~~~~~~~~ 120 (500)
|+.++++.+|+.
T Consensus 97 P~~~vid~~G~v 108 (114)
T cd02967 97 PYAVLLDEAGVI 108 (114)
T ss_pred CeEEEECCCCeE
Confidence 666666655443
No 190
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.79 E-value=1.2e-08 Score=83.92 Aligned_cols=74 Identities=28% Similarity=0.503 Sum_probs=57.4
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC-CceEEEEEeCCCCC------------------------CCCCCCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADVVIAKFDATAND------------------------IPGDTFE 446 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~------------------------~~~~~~~ 446 (500)
.+++++|+||++||++|+...|.+.++.+.++.. .++.++.++.+.+. .+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3679999999999999999999999998888542 35666666665431 2234689
Q ss_pred cCcceEEEEEcCCCceEEe
Q 010824 447 VQGYPTVFFRSASGKTVPY 465 (500)
Q Consensus 447 i~~~P~~~~~~~~~~~~~~ 465 (500)
+.++|++++++++++++..
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 9999999999888876533
No 191
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.79 E-value=5.5e-08 Score=85.51 Aligned_cols=107 Identities=12% Similarity=0.208 Sum_probs=79.3
Q ss_pred EEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHHHHhcC
Q 010824 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKELASQYE 104 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~~~~ 104 (500)
..++.+.+...--++++++|.||++||+.|....|.+.++++++++.+ +.+..|+|+. +...+++++++
T Consensus 25 ~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~ 102 (199)
T PTZ00056 25 KTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTSQFLNQEFPNTKDIRKFNDKNK 102 (199)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecchhccCCCCCCHHHHHHHHHHcC
Confidence 345554444333468999999999999999999999999999998655 7888888742 22334666665
Q ss_pred cc------------------------------------ccc---EEEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 105 IR------------------------------------GFP---TIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 105 i~------------------------------------~~P---~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+. .+| +.++++.+|+.+.++.|..+.+.+.+.|.+.+.
T Consensus 103 ~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~ 179 (199)
T PTZ00056 103 IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLG 179 (199)
T ss_pred CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 42 112 567888788888999999999999888887764
No 192
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.79 E-value=4.5e-08 Score=73.59 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=62.5
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 126 (500)
.++.-+..|+++||++|....+.+.++++.. +++.+..+|.+..++ ++.+|||.++|++++ + |+. .+.|
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~----~~i~~~~vd~~~~~e--~a~~~~V~~vPt~vi--d-G~~--~~~G 79 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLN----PNIEHEMIDGALFQD--EVEERGIMSVPAIFL--N-GEL--FGFG 79 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC----CCceEEEEEhHhCHH--HHHHcCCccCCEEEE--C-CEE--EEeC
Confidence 4556788999999999999999999999774 349999999888877 999999999999975 3 355 4458
Q ss_pred CCCHHHHH
Q 010824 127 PREADGIV 134 (500)
Q Consensus 127 ~~~~~~l~ 134 (500)
..+.++++
T Consensus 80 ~~~~~e~~ 87 (89)
T cd03026 80 RMTLEEIL 87 (89)
T ss_pred CCCHHHHh
Confidence 66666654
No 193
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.79 E-value=2.6e-08 Score=81.40 Aligned_cols=79 Identities=28% Similarity=0.439 Sum_probs=60.4
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC-----------------------CCCCCCCCCCCcC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-----------------------TANDIPGDTFEVQ 448 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~-----------------------~~~~~~~~~~~i~ 448 (500)
.+++++|+||++||++|++..|.+.++.+.++ +.++.++. +.+..+.+.|++.
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 36899999999999999999999999987752 55555553 2233344568999
Q ss_pred cceEEEEEcCCCc-eEEecCCCCHHHH
Q 010824 449 GYPTVFFRSASGK-TVPYEGDRTKEDI 474 (500)
Q Consensus 449 ~~P~~~~~~~~~~-~~~~~g~~~~~~l 474 (500)
++|+.+++.++++ ..++.|..+.+.|
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCeEEEECCCceEEEEEeccCChHhc
Confidence 9998888876676 4478898887754
No 194
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.78 E-value=3.5e-08 Score=80.23 Aligned_cols=92 Identities=22% Similarity=0.398 Sum_probs=66.4
Q ss_pred EeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC---------------------CCC
Q 010824 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA---------------------TAN 438 (500)
Q Consensus 380 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------~~~ 438 (500)
+.++.+.... ..+++++|+||++||++|+.+.|.+.+++..+. +..+.+|- +.+
T Consensus 8 ~~g~~~~~~~-~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (123)
T cd03011 8 LDGEQFDLES-LSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVINDPD 82 (123)
T ss_pred CCCCEeeHHH-hCCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEECCC
Confidence 3444444443 345899999999999999999999999887642 33333322 233
Q ss_pred CCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHH
Q 010824 439 DIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVD 476 (500)
Q Consensus 439 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~ 476 (500)
..+.++|++.++|+++++++++...++.|..+.++|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 44566799999999999988874447779899888864
No 195
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.77 E-value=8e-06 Score=74.53 Aligned_cols=310 Identities=15% Similarity=0.177 Sum_probs=192.5
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCCchh-H-------HHHHHHHHHh--cCCceEEEee---cccccCCCCCCCCC
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFSGEE-F-------ENYTALAEKL--RSDYEFGHTQ---NAKLLPRGESSVTG 211 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~-------~~f~~~a~~~--~~~~~f~~~~---~~~~~~~~~~~~~~ 211 (500)
+..+ +...+.+.+++....+++|+.+..+.. . +.+-++|.+. +..+.||.+. +..++++ +++..
T Consensus 36 Vi~L-neKNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKK--Lgv~E 112 (383)
T PF01216_consen 36 VIDL-NEKNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKK--LGVEE 112 (383)
T ss_dssp CEEE--TTTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHH--HT--S
T ss_pred eEEc-chhHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHh--cCccc
Confidence 4455 666777778888888888876543211 1 3344555555 3468899888 6688888 88887
Q ss_pred -CeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhc-CCCceEEEEEeCCCCCchHHHHHH
Q 010824 212 -PVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFN-SPNAKAMLFMNFSSEGTEPIQSKY 289 (500)
Q Consensus 212 -p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~l 289 (500)
+++.+|+. ++.+.|.|..+.+.|..||-.---.++..++.. ......-+ ...+.++-++.... ......+
T Consensus 113 ~~SiyVfkd-~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~----~e~~~Fe~ied~~klIGyFk~~~---s~~yk~F 184 (383)
T PF01216_consen 113 EGSIYVFKD-GEVIEYDGERSADTLVEFLLDLLEDPVEIINNK----HELKAFERIEDDIKLIGYFKSED---SEHYKEF 184 (383)
T ss_dssp TTEEEEEET-TEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SH----HHHHHHHH--SS-EEEEE-SSTT---SHHHHHH
T ss_pred cCcEEEEEC-CcEEEecCccCHHHHHHHHHHhcccchhhhcCh----hhhhhhhhcccceeEEEEeCCCC---cHHHHHH
Confidence 88988887 556689999999999999988777778888883 22322322 12455666555222 2467889
Q ss_pred HHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC--Ccc-CCCCCChhhHHHHHHHHhcCCCCCcccc
Q 010824 290 REVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG--QKY-LKPNLDADQIAPWVKEYKEGKVPPFRKS 366 (500)
Q Consensus 290 ~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~--~~y-~~~~~~~~~i~~fi~~~~~G~l~~~~~s 366 (500)
.+.|..|..- +.|..+-. +.+++.+|+. .--+-++.+=- -.+ .....+...+.+|+..
T Consensus 185 eeAAe~F~p~-IkFfAtfd---~~vAk~L~lK---~nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~------------ 245 (383)
T PF01216_consen 185 EEAAEHFQPY-IKFFATFD---KKVAKKLGLK---LNEVDFYEPFMDEPITIPGKPYTEEELVEFIEE------------ 245 (383)
T ss_dssp HHHHHHCTTT-SEEEEE-S---HHHHHHHT-S---TT-EEEE-TTSSSEEEESSSS--HHHHHHHHHH------------
T ss_pred HHHHHhhcCc-eeEEEEec---chhhhhcCcc---ccceeeeccccCCCccCCCCCCCHHHHHHHHHH------------
Confidence 9999999998 88876543 4567777774 34455555432 222 3356799999999998
Q ss_pred CCCCCCCCCCeEEEeccchhhhhhcC-CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC---
Q 010824 367 EPIPEENNEPVKVLVADSLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG--- 442 (500)
Q Consensus 367 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--- 442 (500)
+....+++|+.+++-.+=.+. +.-.+|-|-..--+.-.++...+.++|..-.++.++.++.||-+.-+...
T Consensus 246 -----h~rptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yW 320 (383)
T PF01216_consen 246 -----HKRPTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYW 320 (383)
T ss_dssp -----T-S-SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHH
T ss_pred -----hchhHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHH
Confidence 334558889888876655433 67788889889999999999999999999877678999999988754442
Q ss_pred -CCCCcC-cceEEEEEcCCCc-eEEec-----CCCCHHHHHHHHHhhcCCCCCCC
Q 010824 443 -DTFEVQ-GYPTVFFRSASGK-TVPYE-----GDRTKEDIVDFIENNRDKAAPKE 489 (500)
Q Consensus 443 -~~~~i~-~~P~~~~~~~~~~-~~~~~-----g~~~~~~l~~~i~~~~~~~~~~~ 489 (500)
+.|+|. .-|.|=+++-... .+.+. ...+.+.|.+||.+.++++...+
T Consensus 321 E~tF~Idl~~PqIGvVnvtdadsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~e 375 (383)
T PF01216_consen 321 EKTFGIDLSRPQIGVVNVTDADSVWMDMDDDDDLPTAEELEDWIEDVLSGKINTE 375 (383)
T ss_dssp HHHHTT-TTS-EEEEEETTTSEEEEC-STTTSS---HHHHHHHHHHHHCTCCTB-
T ss_pred HhhcCccccCCceeEEeccccccchhccCCcccCCcHHHHHHHHHHHhcCCCCCc
Confidence 112332 3499999865544 44443 23689999999999998876554
No 196
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.76 E-value=1.6e-08 Score=77.97 Aligned_cols=69 Identities=33% Similarity=0.621 Sum_probs=53.9
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC-------------------------CCCCCc
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP-------------------------GDTFEV 447 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-------------------------~~~~~i 447 (500)
+|+++|+||++||++|++..|.+.++.+.++...++.++.|..+..... .+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5789999999999999999999999999998444788888888753111 135778
Q ss_pred CcceEEEEEcCCCc
Q 010824 448 QGYPTVFFRSASGK 461 (500)
Q Consensus 448 ~~~P~~~~~~~~~~ 461 (500)
.++|++++++++|+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999999988775
No 197
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.76 E-value=1.2e-08 Score=72.76 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=49.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
+++|+++||++|+.+.+.+++++.... ++.+..+|++.+....+++++.++|++++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 678999999999999999999977543 59999999999888888899999999865
No 198
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.75 E-value=1e-07 Score=80.04 Aligned_cols=92 Identities=26% Similarity=0.485 Sum_probs=72.4
Q ss_pred cCccChhhhhccCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAP-WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA------------------- 95 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~-~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------- 95 (500)
.+.+.+...--++++++|.||+. ||++|+...|.+.++++.++..+ +.+..|..+.+.
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~ 93 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPPVREFLKKYGINFPVLSDP 93 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHHHHHHHHHTTTTSEEEEET
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHHHHHHHHhhCCCceEEech
Confidence 55555555556889999999999 99999999999999999987655 555555544322
Q ss_pred hHHHHHhcCcc---------cccEEEEEecCCceeeecCCCCC
Q 010824 96 NKELASQYEIR---------GFPTIKILRNGGKTIQEYKGPRE 129 (500)
Q Consensus 96 ~~~~~~~~~i~---------~~P~~~~~~~~~~~~~~~~g~~~ 129 (500)
...+.+++++. ++|+++++..+|+..+...|...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 94 DGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp TSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred HHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 22488889988 99999999999999888888765
No 199
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.73 E-value=2.5e-07 Score=80.93 Aligned_cols=102 Identities=20% Similarity=0.290 Sum_probs=68.2
Q ss_pred EEcCccChhh--hhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEe-------------cCh---hh
Q 010824 34 LTLDHSNFSD--TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD-------------ANE---EA 95 (500)
Q Consensus 34 ~~l~~~~~~~--~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd-------------~~~---~~ 95 (500)
..++.+++.. ...++++++|+||++||++|+...|.+.++.+.. +.++.+...+ .+. ..
T Consensus 58 ~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~ 134 (189)
T TIGR02661 58 PDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDGTPAEHRRFLKDHELGGERYVV 134 (189)
T ss_pred cCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCCCHHHHHHHHHhcCCCcceeec
Confidence 3455555544 3347889999999999999999999999987664 2224444321 000 01
Q ss_pred hHHHHHhcCcccccEEEEEecCCceeeecCCC-CCHHHHHHHHHhh
Q 010824 96 NKELASQYEIRGFPTIKILRNGGKTIQEYKGP-READGIVEYLKKQ 140 (500)
Q Consensus 96 ~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~~ 140 (500)
..++++.|++.++|+.++++++|+... .|. ...+.+.+.+...
T Consensus 135 ~~~i~~~y~v~~~P~~~lID~~G~I~~--~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 135 SAEIGMAFQVGKIPYGVLLDQDGKIRA--KGLTNTREHLESLLEAD 178 (189)
T ss_pred hhHHHHhccCCccceEEEECCCCeEEE--ccCCCCHHHHHHHHHHH
Confidence 234778899999999999998777643 454 3556666666543
No 200
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.72 E-value=4.2e-08 Score=73.08 Aligned_cols=70 Identities=33% Similarity=0.617 Sum_probs=52.6
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
++.+..++++++|+|+++||++|+.+...+ ..+.+.+.++ ++.+.||.+.... .. ++...++|+++|+++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~~~~--~~-~~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDDEDP--NA-QFDRQGYPTFFFLDP 82 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTTHHH--HH-HHHHCSSSEEEEEET
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCCCCh--hH-HhCCccCCEEEEeCC
Confidence 556668999999999999999999998766 3444435444 9999999977665 22 222267999999874
No 201
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.71 E-value=6.3e-08 Score=77.48 Aligned_cols=74 Identities=28% Similarity=0.614 Sum_probs=62.4
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----------------------CCCCCCCCcCc
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----------------------DIPGDTFEVQG 449 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------~~~~~~~~i~~ 449 (500)
++.++|+||++||+.|+...+.+.++...++. .++.++.++++.+ ..+.+.|++.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 78999999999999999999999999999863 3699999999875 55567789999
Q ss_pred ceEEEEEcCCCceE-EecC
Q 010824 450 YPTVFFRSASGKTV-PYEG 467 (500)
Q Consensus 450 ~P~~~~~~~~~~~~-~~~g 467 (500)
+|++++++++++++ ++.|
T Consensus 98 ~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 98 LPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cceEEEECCCCcEEEEecC
Confidence 99999998777644 4444
No 202
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.7e-08 Score=82.97 Aligned_cols=90 Identities=19% Similarity=0.467 Sum_probs=74.4
Q ss_pred cCceEEc-CccChhhhh--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc
Q 010824 30 KEFVLTL-DHSNFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106 (500)
Q Consensus 30 ~~~v~~l-~~~~~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 106 (500)
+..+..+ +.+.++..+ ++...|+|.||+.|.+.|+++.|.+.+++.+|... ...||.||....++ .+.+|+|+
T Consensus 123 pe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~--~lkFGkvDiGrfpd--~a~kfris 198 (265)
T KOG0914|consen 123 PETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN--LLKFGKVDIGRFPD--VAAKFRIS 198 (265)
T ss_pred chheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC--CCcccceeeccCcC--hHHheeec
Confidence 3457777 556666666 44558999999999999999999999999999854 48999999999999 99999875
Q ss_pred ------cccEEEEEecCCceeeec
Q 010824 107 ------GFPTIKILRNGGKTIQEY 124 (500)
Q Consensus 107 ------~~P~~~~~~~~~~~~~~~ 124 (500)
..||+.+|.+| +.+.+.
T Consensus 199 ~s~~srQLPT~ilFq~g-kE~~Rr 221 (265)
T KOG0914|consen 199 LSPGSRQLPTYILFQKG-KEVSRR 221 (265)
T ss_pred cCcccccCCeEEEEccc-hhhhcC
Confidence 58999999976 555443
No 203
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.69 E-value=9e-08 Score=76.39 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.4
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHHHH---HHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceE-Ee
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPILD---EVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTV-PY 465 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~~~---~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~-~~ 465 (500)
...+|+++|+|++.||++|+.+...+. ++...++. ++..+.++.+..+.-....+ .++|+++|++++++++ ++
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccc
Confidence 467999999999999999999988643 24444443 57766777654322221123 6899999998776633 44
Q ss_pred cC----------CCCHHHHHHHHHh
Q 010824 466 EG----------DRTKEDIVDFIEN 480 (500)
Q Consensus 466 ~g----------~~~~~~l~~~i~~ 480 (500)
.| +.+.+.|.+=+++
T Consensus 97 ~Gy~~~~~~~y~~~~~~~~~~~m~~ 121 (130)
T cd02960 97 TGRYSNRLYTYEPADIPLLIENMKK 121 (130)
T ss_pred cccccCccceeCcCcHHHHHHHHHH
Confidence 43 3445555554443
No 204
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.67 E-value=1.7e-07 Score=79.09 Aligned_cols=96 Identities=17% Similarity=0.268 Sum_probs=67.8
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHHHHh-cCc-
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKELASQ-YEI- 105 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~~-~~i- 105 (500)
+.+.+...-.++++++|.||++||+ |....|.+.++++++++.+ +.+..|+++. +...+++++ +++
T Consensus 11 ~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~ 87 (152)
T cd00340 11 DGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVT 87 (152)
T ss_pred CCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccCccccCCCCCHHHHHHHHHHhcCCC
Confidence 3333333333689999999999999 9999999999999997644 7888887642 122235543 332
Q ss_pred ----------------------cccc-----------EEEEEecCCceeeecCCCCCHHHHHH
Q 010824 106 ----------------------RGFP-----------TIKILRNGGKTIQEYKGPREADGIVE 135 (500)
Q Consensus 106 ----------------------~~~P-----------~~~~~~~~~~~~~~~~g~~~~~~l~~ 135 (500)
.++| +.++++.+|+...++.|..+.+.+.+
T Consensus 88 fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~ 150 (152)
T cd00340 88 FPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEK 150 (152)
T ss_pred ceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHh
Confidence 2345 67788777788888888888777654
No 205
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.65 E-value=6.3e-08 Score=72.84 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=61.6
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHH
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKE 472 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~ 472 (500)
+..-+..|+++||++|....+.+.+++.... ++.+..+|.+......++|++.++|++++ .|. ..+.|..+.+
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~---~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~--~~~~G~~~~~ 84 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP---NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE--LFGFGRMTLE 84 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC---CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE--EEEeCCCCHH
Confidence 4456888999999999999999999998764 59999999999888888899999999964 343 3345766776
Q ss_pred HHH
Q 010824 473 DIV 475 (500)
Q Consensus 473 ~l~ 475 (500)
++.
T Consensus 85 e~~ 87 (89)
T cd03026 85 EIL 87 (89)
T ss_pred HHh
Confidence 654
No 206
>PLN02412 probable glutathione peroxidase
Probab=98.65 E-value=2.9e-07 Score=78.78 Aligned_cols=105 Identities=14% Similarity=0.187 Sum_probs=77.3
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh------hh----hHHHHHhcC-
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE------EA----NKELASQYE- 104 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------~~----~~~~~~~~~- 104 (500)
++.+.+...--++++++|.||++||+.|....|.+.++.+++++.+ +.+..|+++. +. ...++++++
T Consensus 17 ~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (167)
T PLN02412 17 IGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCNQFLGQEPGSNEEIQQTVCTRFKA 94 (167)
T ss_pred CCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEecccccccCCCCCHHHHHHHHHHccCC
Confidence 4444443332367899999999999999999999999999998765 8888888742 11 111223322
Q ss_pred ---------------------------------cccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 105 ---------------------------------IRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 105 ---------------------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
+...|+.++++.+|+.+.++.|..+.+.+.+.|.+.+.
T Consensus 95 ~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 95 EFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33357888898888999999999999999998887653
No 207
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.65 E-value=1.7e-07 Score=79.41 Aligned_cols=84 Identities=14% Similarity=0.299 Sum_probs=65.0
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC---------C----CCCCCCc--CcceEEEEEcCCCc
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND---------I----PGDTFEV--QGYPTVFFRSASGK 461 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---------~----~~~~~~i--~~~P~~~~~~~~~~ 461 (500)
+|.||++||++|++..|.+.+++++++ +.++.|+.+... + ..+.|++ .++|+.++++++++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~ 148 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTL 148 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCc
Confidence 778999999999999999999999874 555555555331 0 1224663 69999999988887
Q ss_pred eE--EecCCCCHHHHHHHHHhhcCC
Q 010824 462 TV--PYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 462 ~~--~~~g~~~~~~l~~~i~~~~~~ 484 (500)
+. .+.|..+.+++.+.|.+.+..
T Consensus 149 i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 149 EALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHhh
Confidence 53 688999999999988877654
No 208
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.64 E-value=3.6e-08 Score=96.62 Aligned_cols=104 Identities=28% Similarity=0.415 Sum_probs=79.9
Q ss_pred EEEecc-chhhhhhcC-CCeEEEEEECCCChhHhhhhHHHH-HHHHHcCCCCceEEEEEeCCCCCCC----CCCCCcCcc
Q 010824 378 KVLVAD-SLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILD-EVAVSYQNDADVVIAKFDATANDIP----GDTFEVQGY 450 (500)
Q Consensus 378 ~~l~~~-~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~-~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~i~~~ 450 (500)
..++.. .+++.+.+. +|+|+++|||+||..||++.+..- ......+ -.++...+.|.++|+.- .+++++-++
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~-~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~ 535 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQA-LQDVVLLQADVTANDPAITALLKRLGVFGV 535 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHh-cCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence 445555 777777433 459999999999999999999654 3333222 23699999999988554 457999999
Q ss_pred eEEEEEcCCC-ceEEecCCCCHHHHHHHHHhhc
Q 010824 451 PTVFFRSASG-KTVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 451 P~~~~~~~~~-~~~~~~g~~~~~~l~~~i~~~~ 482 (500)
|++++|+.++ ++....|.++++.+.+++++..
T Consensus 536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 536 PTYLFFGPQGSEPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred CEEEEECCCCCcCcCCcceecHHHHHHHHHHhc
Confidence 9999998554 4666889999999999998753
No 209
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.64 E-value=9.3e-08 Score=76.33 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=71.5
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHH-HH--HHHHHcCCCCceEEEEEeCCCC--CCCCCCCCcCcceEEEEEcC-CCc-e
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPI-LD--EVAVSYQNDADVVIAKFDATAN--DIPGDTFEVQGYPTVFFRSA-SGK-T 462 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~-~~--~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~i~~~P~~~~~~~-~~~-~ 462 (500)
...+|.++|+|+++||++|+.+... |. ++.+.++. ++.+..+|++.. ......|++.++|+++++.+ +++ +
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l 91 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVL 91 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEe
Confidence 4668999999999999999998763 42 34455544 688888898752 33456689999999999976 555 5
Q ss_pred EEecCCCCHHHHHHHHHhhcC
Q 010824 463 VPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 463 ~~~~g~~~~~~l~~~i~~~~~ 483 (500)
.++.|..+.+++.+.|++...
T Consensus 92 ~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 92 KVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred EEEcCCCCHHHHHHHHHHHHh
Confidence 588899999999999987653
No 210
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.62 E-value=3.1e-07 Score=100.64 Aligned_cols=91 Identities=22% Similarity=0.431 Sum_probs=72.8
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC---CC------------------------CCCCCCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA---TA------------------------NDIPGDT 444 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~---~~------------------------~~~~~~~ 444 (500)
.+++++|+||++||++|+...|.|+++.+++++. ++.++.|.. +. +....+.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999753 577776642 11 1112346
Q ss_pred CCcCcceEEEEEcCCCc-eEEecCCCCHHHHHHHHHhhcC
Q 010824 445 FEVQGYPTVFFRSASGK-TVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 445 ~~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
|++.++|++++++++++ +.++.|....+.+.++|+..+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 88999999999976666 4488899999999999998754
No 211
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.60 E-value=6.6e-07 Score=75.61 Aligned_cols=103 Identities=13% Similarity=0.167 Sum_probs=74.9
Q ss_pred cCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHHHHh-cCc
Q 010824 36 LDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKELASQ-YEI 105 (500)
Q Consensus 36 l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~~-~~i 105 (500)
++.+.+...--++++++|.||++||+.|+...|.+.+++++++..+ +.+..|+|.. +...+++++ +++
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~ 87 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPCNQFGESEPDSSKEIESFARRNYGV 87 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEeccccccCCCCCHHHHHHHHHHhcCC
Confidence 3344444333467899999999999999999999999999998654 8888888721 112234543 322
Q ss_pred --------------------------ccccE----EEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 106 --------------------------RGFPT----IKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 106 --------------------------~~~P~----~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
.++|+ .++++.+|+....|.|..+.+.+.+.|.+.
T Consensus 88 ~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 88 TFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13676 778888888889999999998888877654
No 212
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.58 E-value=2.7e-08 Score=85.21 Aligned_cols=103 Identities=28% Similarity=0.519 Sum_probs=91.0
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
.++.++.+++...+ ...+++.|++|||+.|+...+.|...+.--.+ -++.++.+|++.|+.+.-+|-+..+|+|+-
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 58889999999887 67899999999999999999999998765444 589999999999999999999999999999
Q ss_pred EcCCCceEEecCCCCHHHHHHHHHhhcC
Q 010824 456 RSASGKTVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 456 ~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
.. .+..-+|.|.++..+++.|+...--
T Consensus 101 vk-DGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 101 VK-DGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred ee-ccccccccCcccchhHHHHHHhhhh
Confidence 94 5667799999999999999986543
No 213
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.53 E-value=2.6e-07 Score=75.07 Aligned_cols=77 Identities=23% Similarity=0.569 Sum_probs=62.7
Q ss_pred ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----------------------hHHHHHh
Q 010824 46 SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----------------------NKELASQ 102 (500)
Q Consensus 46 ~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~~~~~~~ 102 (500)
-+|+.+.++|.+.||++|+.|-|.+.+.+++++..+..+-++-|+.+.+. ..+++++
T Consensus 31 l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~k 110 (157)
T KOG2501|consen 31 LQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEK 110 (157)
T ss_pred hCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHh
Confidence 46799999999999999999999999999999887655666656544422 3358889
Q ss_pred cCcccccEEEEEecCCceee
Q 010824 103 YEIRGFPTIKILRNGGKTIQ 122 (500)
Q Consensus 103 ~~i~~~P~~~~~~~~~~~~~ 122 (500)
|+|.++|++.+..++|..+.
T Consensus 111 y~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 111 YEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred cccCcCceeEEecCCCCEeh
Confidence 99999999999998876543
No 214
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.7e-07 Score=79.02 Aligned_cols=92 Identities=20% Similarity=0.356 Sum_probs=76.0
Q ss_pred CCCCeEEE-eccchhhhhh-cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcC--
Q 010824 373 NNEPVKVL-VADSLQDMVF-NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ-- 448 (500)
Q Consensus 373 ~~~~~~~l-~~~~~~~~~~-~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~-- 448 (500)
.++.++.+ .++.++..+. +....|+|-|++-|.+.|+.+.|.+.+++..+... +++|+++|+...++..++|+|.
T Consensus 122 gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~-~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN-LLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC-CCcccceeeccCcChHHheeeccC
Confidence 34557788 5555555553 34668999999999999999999999999999763 8999999999999999888875
Q ss_pred ----cceEEEEEcCCCceEEe
Q 010824 449 ----GYPTVFFRSASGKTVPY 465 (500)
Q Consensus 449 ----~~P~~~~~~~~~~~~~~ 465 (500)
.+||+.+|.+|+++.|.
T Consensus 201 ~~srQLPT~ilFq~gkE~~Rr 221 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRR 221 (265)
T ss_pred cccccCCeEEEEccchhhhcC
Confidence 79999999888775554
No 215
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.49 E-value=1.8e-06 Score=74.49 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=73.6
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh---------------------------hhHHH
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE---------------------------ANKEL 99 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~~~~ 99 (500)
++++++|+||++||+.|....+.+.++.+++.+.+ +.++.|+++.. ....+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 67899999999999999999999999999997533 77788876431 12246
Q ss_pred HHhcCcccccEEEEEecCCceeeec---------CCCCCHHHHHHHHHhhcCCC
Q 010824 100 ASQYEIRGFPTIKILRNGGKTIQEY---------KGPREADGIVEYLKKQSGPA 144 (500)
Q Consensus 100 ~~~~~i~~~P~~~~~~~~~~~~~~~---------~g~~~~~~l~~~i~~~~~~~ 144 (500)
++.|++...|++++++++|+..... .+..+.+.+.+-|...+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 7788999999999999887765432 12346677888888776543
No 216
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.44 E-value=3.3e-06 Score=73.49 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=73.6
Q ss_pred EEcCccChhhhhccCCeE-EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHH-HHh
Q 010824 34 LTLDHSNFSDTVSKHNFI-VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKEL-ASQ 102 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~-lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~-~~~ 102 (500)
..++.+.+...--+++++ ++.+|++||++|....|.+.++++++++.+ +.+..|+|+. +...++ .++
T Consensus 26 ~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~~~~~~~~~~~~~~~~f~~~~ 103 (183)
T PTZ00256 26 IDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCNQFMEQEPWDEPEIKEYVQKK 103 (183)
T ss_pred EcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 345555444433367754 456699999999999999999999998654 7888887642 111111 122
Q ss_pred c------------------------------------CcccccE---EEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 103 Y------------------------------------EIRGFPT---IKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 103 ~------------------------------------~i~~~P~---~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
+ ++.++|+ .++++.+|+.+.++.|..+.+.+.+.|.+.+
T Consensus 104 ~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 104 FNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2 2346684 5788888899899999999888888887765
No 217
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.44 E-value=7.6e-07 Score=72.53 Aligned_cols=75 Identities=21% Similarity=0.429 Sum_probs=57.2
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC---C------------------------CCCCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN---D------------------------IPGDT 444 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~------------------------~~~~~ 444 (500)
.++.++|+||+.||++|+...|.++++.++++. .++.++.|+.... + .+.+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 468999999999999999999999999999975 3688877765210 0 01234
Q ss_pred CCcCcceEEEEEcCCCceE-EecC
Q 010824 445 FEVQGYPTVFFRSASGKTV-PYEG 467 (500)
Q Consensus 445 ~~i~~~P~~~~~~~~~~~~-~~~g 467 (500)
|++.++|+.+++++++++. ++.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 7788999999998777744 5555
No 218
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.42 E-value=2.4e-06 Score=76.41 Aligned_cols=91 Identities=20% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----CCC-------CCC----C----------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----DIP-------GDT----F---------- 445 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~-------~~~----~---------- 445 (500)
.++.++|.||++||++|+...|.|.++.+.+++. ++.++-|+++.. +.. .++ |
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G 176 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNG 176 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCc
Confidence 3689999999999999999999999999999753 688888776310 000 000 1
Q ss_pred -------C-------------cCcceEEEEEcCCCceE-EecCCCCHHHHHHHHHhhcC
Q 010824 446 -------E-------------VQGYPTVFFRSASGKTV-PYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 446 -------~-------------i~~~P~~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~~~ 483 (500)
+ +...|+.++++++|+++ +|.|..+.++|.+.|++.++
T Consensus 177 ~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 177 PSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred chhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 0 23358999998888855 78899999999999988764
No 219
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.41 E-value=2.3e-06 Score=69.56 Aligned_cols=73 Identities=22% Similarity=0.511 Sum_probs=60.0
Q ss_pred cCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------hHHHHHhcCcc
Q 010824 47 KHNFIVVEFYAP-WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------NKELASQYEIR 106 (500)
Q Consensus 47 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------~~~~~~~~~i~ 106 (500)
.+++++|.||+. ||++|....+.+.++..+++..+ +.+..|+.+... ...+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 779999999999 99999999999999999998654 777777765532 22477788888
Q ss_pred ------cccEEEEEecCCcee
Q 010824 107 ------GFPTIKILRNGGKTI 121 (500)
Q Consensus 107 ------~~P~~~~~~~~~~~~ 121 (500)
.+|++++++++|...
T Consensus 102 ~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp ETTTSEESEEEEEEETTSBEE
T ss_pred cccCCceEeEEEEECCCCEEE
Confidence 899999999887754
No 220
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.40 E-value=8e-07 Score=71.04 Aligned_cols=68 Identities=25% Similarity=0.434 Sum_probs=48.0
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEE-eCCCC-------------------CCCCCCCCcCcce
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKF-DATAN-------------------DIPGDTFEVQGYP 451 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~i-d~~~~-------------------~~~~~~~~i~~~P 451 (500)
.+++++|+||++||++|+...|.+.++++.+.. ++.++.+ |.+.. ....+.|++..+|
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P 97 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD--WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLP 97 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC--CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcC
Confidence 368999999999999999999999999887754 3444433 21110 0012356778889
Q ss_pred EEEEEcCCCc
Q 010824 452 TVFFRSASGK 461 (500)
Q Consensus 452 ~~~~~~~~~~ 461 (500)
+.++++++++
T Consensus 98 ~~~vid~~G~ 107 (114)
T cd02967 98 YAVLLDEAGV 107 (114)
T ss_pred eEEEECCCCe
Confidence 9989876665
No 221
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.40 E-value=1.7e-06 Score=75.76 Aligned_cols=87 Identities=30% Similarity=0.465 Sum_probs=61.4
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC-------------C-----CCCCCCCCCCcCcceEE
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA-------------T-----ANDIPGDTFEVQGYPTV 453 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~-------------~-----~~~~~~~~~~i~~~P~~ 453 (500)
.+++++|+||++||+.|+...|.+.++.+..+. ++.++..|. + ......+.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~--~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEET--DVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCC--cEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 568999999999999999999999998766432 455544220 0 01122356889999999
Q ss_pred EEEcCCCceEEecCC-CCHHHHHHHHHhh
Q 010824 454 FFRSASGKTVPYEGD-RTKEDIVDFIENN 481 (500)
Q Consensus 454 ~~~~~~~~~~~~~g~-~~~~~l~~~i~~~ 481 (500)
++++++|++. +.|. .+.+.+.+.++..
T Consensus 151 ~lID~~G~I~-~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 151 VLLDQDGKIR-AKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEECCCCeEE-EccCCCCHHHHHHHHHHH
Confidence 9998777654 3443 5667787777644
No 222
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.39 E-value=1.2e-07 Score=70.54 Aligned_cols=65 Identities=40% Similarity=0.720 Sum_probs=49.7
Q ss_pred hcCCCeEEEEEECCCChhHhhhhHHH---HHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEc
Q 010824 390 FNSGKNVLLEFYAPWCGHCKKLAPIL---DEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRS 457 (500)
Q Consensus 390 ~~~~~~~~v~f~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 457 (500)
...+++++|+|+++||+.|+.+...+ .++...+.. ++..+++|.+..+.... +...++|++++++
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHH-HHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHH-hCCccCCEEEEeC
Confidence 36799999999999999999998876 344443443 69999999976654332 3347799999985
No 223
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.39 E-value=2.9e-06 Score=67.23 Aligned_cols=95 Identities=12% Similarity=0.246 Sum_probs=76.0
Q ss_pred hhhhhccCCeEEEEEECC----CChhhhhhh--HHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 41 FSDTVSKHNFIVVEFYAP----WCGHCKKLA--PEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~----~c~~C~~~~--~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
++...++.|.++|++|++ ||..|+... |.+.+ .++.. +.+...|....+...++..+++.++|++.++
T Consensus 10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~---~ln~~---fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIE---YINTR---MLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHH---HHHcC---EEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 344457899999999999 888887665 33333 34333 8999999998888889999999999999999
Q ss_pred ---ecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 115 ---RNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 115 ---~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
++..+.+.+..|..+.+++...++..+
T Consensus 84 ~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 84 MLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 444456789999999999999988765
No 224
>smart00594 UAS UAS domain.
Probab=98.38 E-value=9.9e-07 Score=71.12 Aligned_cols=96 Identities=10% Similarity=0.168 Sum_probs=70.5
Q ss_pred eccchhhhhhcCCCeEEEEEECCCChhHhhhhHH-HH--HHHHHcCCCCceEEEEEeCCCCCC--CCCCCCcCcceEEEE
Q 010824 381 VADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPI-LD--EVAVSYQNDADVVIAKFDATANDI--PGDTFEVQGYPTVFF 455 (500)
Q Consensus 381 ~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~~--~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~i~~~P~~~~ 455 (500)
+-++..+.....+|.++|+|+++||+.|+.+... |. ++...++. ++.+..+|++..+. ...+|++.++|++++
T Consensus 15 s~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 15 SLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAI 92 (122)
T ss_pred CHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEEEE
Confidence 3344444445678899999999999999998764 32 23444544 68888888876543 356799999999999
Q ss_pred EcCCC--c----eEEecCCCCHHHHHHHH
Q 010824 456 RSASG--K----TVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 456 ~~~~~--~----~~~~~g~~~~~~l~~~i 478 (500)
+..++ . ..++.|..+.++|+.+|
T Consensus 93 l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 93 VDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 96554 1 33678999999999876
No 225
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.37 E-value=2.1e-06 Score=71.45 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=68.0
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------hHHHHHhcCcc
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------NKELASQYEIR 106 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------~~~~~~~~~i~ 106 (500)
.+++++|.|| +.||+.|....+.+.++.+++.+.+ +.++.|..+... ...+++.||+.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4789999999 6899999999999999999987544 556666543321 22477788888
Q ss_pred cc---------cEEEEEecCCceeeecCCCCCHHHHHHH
Q 010824 107 GF---------PTIKILRNGGKTIQEYKGPREADGIVEY 136 (500)
Q Consensus 107 ~~---------P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 136 (500)
.. |+.++++.+|+....+.|....+.+.+-
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 87 8999999888888999998776666543
No 226
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.34 E-value=1.9e-05 Score=80.88 Aligned_cols=177 Identities=15% Similarity=0.192 Sum_probs=125.3
Q ss_pred CCceEE-EEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCC-cc-CCCCC
Q 010824 267 PNAKAM-LFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQ-KY-LKPNL 343 (500)
Q Consensus 267 ~~~~~~-l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~-~y-~~~~~ 343 (500)
..++.+ +|.+ +++.+++..+.+++++.--. + +++...+.. ...|++.+...+.. .. |.|-+
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s~-~-i~~~~~~~~-------------~~~p~~~~~~~~~~~~i~f~g~P 81 (517)
T PRK15317 18 ERPIELVASLD-DSEKSAELKELLEEIASLSD-K-ITVEEDSLD-------------VRKPSFSITRPGEDTGVRFAGIP 81 (517)
T ss_pred CCCEEEEEEeC-CCchHHHHHHHHHHHHHhCC-c-eEEEEccCC-------------CCCCEEEEEcCCccceEEEEecC
Confidence 345544 4444 67778888888888887653 4 666442211 25799999863321 12 56888
Q ss_pred ChhhHHHHHHHHhc-CCCCCccccCCCCCCCCCCeEEEeccchhhhhhcC-CCeEEEEEECCCChhHhhhhHHHHHHHHH
Q 010824 344 DADQIAPWVKEYKE-GKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNS-GKNVLLEFYAPWCGHCKKLAPILDEVAVS 421 (500)
Q Consensus 344 ~~~~i~~fi~~~~~-G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~v~f~~~~c~~c~~~~~~~~~~~~~ 421 (500)
.-..+..||..+.+ +. .-..|+.++.+.+- .- +..-+-.|++++|++|......+.+++..
T Consensus 82 ~g~Ef~s~i~~i~~~~~----------------~~~~l~~~~~~~i~-~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 82 MGHEFTSLVLALLQVGG----------------HPPKLDQEVIEQIK-ALDGDFHFETYVSLSCHNCPDVVQALNLMAVL 144 (517)
T ss_pred ccHHHHHHHHHHHHhcC----------------CCCCCCHHHHHHHH-hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh
Confidence 88999999998875 22 12234444444333 33 34458899999999999998988888875
Q ss_pred cCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHhhcC
Q 010824 422 YQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 422 ~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
-. ++.+-.+|...+++..++|++.++|++++ .+ + ..+.|..+.+++.+.+.+...
T Consensus 145 ~~---~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~-~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 145 NP---NITHTMIDGALFQDEVEARNIMAVPTVFL--NG-E-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CC---CceEEEEEchhCHhHHHhcCCcccCEEEE--CC-c-EEEecCCCHHHHHHHHhcccc
Confidence 33 68899999999999999999999999965 22 2 457799999999988876543
No 227
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.32 E-value=3.1e-05 Score=79.87 Aligned_cols=186 Identities=15% Similarity=0.183 Sum_probs=138.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCce-eeecC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKT-IQEYK 125 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~-~~~~~ 125 (500)
++++.++.|+.+.|..|..+...++++++ +.+ ++.+...|...+.. ++++|++...|++.+++.+++. -.+|.
T Consensus 365 ~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~~~~--~~~~~~v~~~P~~~i~~~~~~~~~i~f~ 438 (555)
T TIGR03143 365 ENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGEEPE--SETLPKITKLPTVALLDDDGNYTGLKFH 438 (555)
T ss_pred CCCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEeccccchh--hHhhcCCCcCCEEEEEeCCCcccceEEE
Confidence 55667889999999999999888888874 433 48888888877777 9999999999999999755443 37899
Q ss_pred CCCCHHHHHHHHHhhcCCC--ccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccC
Q 010824 126 GPREADGIVEYLKKQSGPA--SAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLP 203 (500)
Q Consensus 126 g~~~~~~l~~~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~ 203 (500)
|--.-.++..||...+.-. -..+ +.+
T Consensus 439 g~P~G~Ef~s~i~~i~~~~~~~~~l-~~~--------------------------------------------------- 466 (555)
T TIGR03143 439 GVPSGHELNSFILALYNAAGPGQPL-GEE--------------------------------------------------- 466 (555)
T ss_pred ecCccHhHHHHHHHHHHhcCCCCCC-CHH---------------------------------------------------
Confidence 9888888888887765321 1111 111
Q ss_pred CCCCCCCCCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCCCCCCccchhhhhcCCCceEE-EEEeCCCCCc
Q 010824 204 RGESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNSDANNHPFVIKFFNSPNAKAM-LFMNFSSEGT 282 (500)
Q Consensus 204 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~ 282 (500)
..+.+-.-.+++.+ +|+..+|..|
T Consensus 467 -------------------------------------------------------~~~~i~~~~~~~~i~v~~~~~C~~C 491 (555)
T TIGR03143 467 -------------------------------------------------------LLEKIKKITKPVNIKIGVSLSCTLC 491 (555)
T ss_pred -------------------------------------------------------HHHHHHhcCCCeEEEEEECCCCCCc
Confidence 11122222345444 5677799999
Q ss_pred hHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCCCccCCCCCChhhHHHHH
Q 010824 283 EPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDGQKYLKPNLDADQIAPWV 352 (500)
Q Consensus 283 ~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~~~y~~~~~~~~~i~~fi 352 (500)
.+..+.+.++|....+ +..-.+|...++++++.+++. .+|+++|-. ...+.|..+.+.+.+|+
T Consensus 492 p~~~~~~~~~~~~~~~--i~~~~i~~~~~~~~~~~~~v~--~vP~~~i~~---~~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 492 PDVVLAAQRIASLNPN--VEAEMIDVSHFPDLKDEYGIM--SVPAIVVDD---QQVYFGKKTIEEMLELI 554 (555)
T ss_pred HHHHHHHHHHHHhCCC--ceEEEEECcccHHHHHhCCce--ecCEEEECC---EEEEeeCCCHHHHHHhh
Confidence 9999999999999775 999999999999999999998 999999843 23344777888887775
No 228
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=98.29 E-value=8.6e-06 Score=60.55 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=80.7
Q ss_pred CcEEEeCCCCCCccchhhhhcCC--CceEEEEEeCCCCCchHHHHHHHHHHHhhcCc-eeEEEEEcccchhhHH----hh
Q 010824 245 PIVTVFNSDANNHPFVIKFFNSP--NAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQ-GISFLLGDLEASQGAF----QY 317 (500)
Q Consensus 245 p~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~-~~~f~~~d~~~~~~~~----~~ 317 (500)
|.++++++ .++....... .-.++.|....+.+--++.+.++++|+.+... .+.|+|+|...+|-+. +.
T Consensus 1 ptlrkl~~-----~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWekt 75 (120)
T cd03074 1 PTLRKLKP-----ENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKT 75 (120)
T ss_pred CchhhccH-----HHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhh
Confidence 44556666 4555544433 45566788877777789999999999999865 6999999999887666 47
Q ss_pred cCCCCCCCceEEEEeCCC--Ccc--CCC---CCChhhHHHHHHHHh
Q 010824 318 FGLQESQVPLIVIQTNDG--QKY--LKP---NLDADQIAPWVKEYK 356 (500)
Q Consensus 318 ~gi~~~~~P~i~i~~~~~--~~y--~~~---~~~~~~i~~fi~~~~ 356 (500)
||++- ..|++.+.+... ..+ +++ ..+.+.++.||++++
T Consensus 76 F~IDl-~~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 76 FGIDL-FRPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred cCccc-CCCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 78886 479999999986 344 543 389999999999974
No 229
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.28 E-value=6e-06 Score=75.31 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=76.6
Q ss_pred CCCeEEEe-ccchhhhhhcC--CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcc
Q 010824 374 NEPVKVLV-ADSLQDMVFNS--GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGY 450 (500)
Q Consensus 374 ~~~~~~l~-~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~ 450 (500)
.+.+.+++ ++.|-+.+.+. ...|||.||.+.++.|..+...|..+|..+.. ++|++|..+.-+ ....|.+..+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCC-TTTTS-TTC-
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccC-cccCCcccCC
Confidence 35688885 47888887332 34799999999999999999999999999874 999999998765 5556999999
Q ss_pred eEEEEEcCCCceEEecC-------CCCHHHHHHHHHhhc
Q 010824 451 PTVFFRSASGKTVPYEG-------DRTKEDIVDFIENNR 482 (500)
Q Consensus 451 P~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~~~ 482 (500)
|++++|..|..+..+.| ..+..+|..||.++.
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 99999986655445442 367889999999764
No 230
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.27 E-value=1.9e-05 Score=60.91 Aligned_cols=108 Identities=25% Similarity=0.455 Sum_probs=80.4
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh---hhHHHHHhcCc--cc
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE---ANKELASQYEI--RG 107 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---~~~~~~~~~~i--~~ 107 (500)
...|++-+|++++.+.+.++|.|=.. -|+- .-+..|.++|.+.....+++-++.|-+... ...+|+++|++ ..
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~a-yPyG-eKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~ 83 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVA-YPYG-EKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKED 83 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEES-S--C-HHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC
T ss_pred eeeccceehhheeccCceEEEEEecc-CCCc-chHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCccc
Confidence 46789999999999999999999633 2222 344788888855444467788999876552 34469999999 56
Q ss_pred ccEEEEEecCCceeeec--CCCCCHHHHHHHHHhhcC
Q 010824 108 FPTIKILRNGGKTIQEY--KGPREADGIVEYLKKQSG 142 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~~~ 142 (500)
+|.+++|..+.+.+..| .|..+.+.|.+|+..+.+
T Consensus 84 fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 84 FPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp -SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred CCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 89999999777788888 899999999999998764
No 231
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.27 E-value=5.7e-06 Score=71.38 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=71.6
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----CCC------------------------C
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----DIP------------------------G 442 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~------------------------~ 442 (500)
.++.++++||++||+.|....+.+.++..+++. .++.++.|..+.. +.. .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 568999999999999999999999999999864 2688888876542 011 2
Q ss_pred CCCCcCcceEEEEEcCCCceEEec----------CCCCHHHHHHHHHhhcCCCC
Q 010824 443 DTFEVQGYPTVFFRSASGKTVPYE----------GDRTKEDIVDFIENNRDKAA 486 (500)
Q Consensus 443 ~~~~i~~~P~~~~~~~~~~~~~~~----------g~~~~~~l~~~i~~~~~~~~ 486 (500)
+.|++...|+++++++++++.... +..+.+++.+-|+..++...
T Consensus 103 ~~~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 156 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAGKP 156 (171)
T ss_pred HHcCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHHHHcCCC
Confidence 357788999999998887754221 23567889999998876543
No 232
>PLN02412 probable glutathione peroxidase
Probab=98.26 E-value=6.5e-06 Score=70.48 Aligned_cols=92 Identities=22% Similarity=0.226 Sum_probs=69.0
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----CCC------------------C------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----DIP------------------G------ 442 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~------------------~------ 442 (500)
.++.++|.||++||+.|+...|.+.++.+++++. ++.++-|+++.. +.. .
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~g 106 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNG 106 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeCC
Confidence 3689999999999999999999999999999753 688887775310 000 0
Q ss_pred ----CCC-------------CcCcceEEEEEcCCCceE-EecCCCCHHHHHHHHHhhcCC
Q 010824 443 ----DTF-------------EVQGYPTVFFRSASGKTV-PYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 443 ----~~~-------------~i~~~P~~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~~~~ 484 (500)
..| .+...|+.++++++|+++ ++.|..+.+++.+.|++.++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~~ 166 (167)
T PLN02412 107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQ 166 (167)
T ss_pred CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHhh
Confidence 001 033468999998888855 788999999999999887653
No 233
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.24 E-value=2.2e-06 Score=75.47 Aligned_cols=93 Identities=15% Similarity=0.174 Sum_probs=67.7
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----CCC------CC-----------------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----DIP------GD----------------- 443 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~------~~----------------- 443 (500)
.+++++|.||++||++|+...|.|.++..++++. ++.++.|+++.. +.. .+
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~ 116 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNGE 116 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccCC
Confidence 3689999999999999999999999999999653 688888876320 000 00
Q ss_pred ---------------CCCc----Ccce---EEEEEcCCCceE-EecCCCCHHHHHHHHHhhcCCC
Q 010824 444 ---------------TFEV----QGYP---TVFFRSASGKTV-PYEGDRTKEDIVDFIENNRDKA 485 (500)
Q Consensus 444 ---------------~~~i----~~~P---~~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~~~~~ 485 (500)
.++. ..+| +.++++++|+++ ++.|..+.+.+.+.|++.++++
T Consensus 117 ~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 117 NTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred ccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 0111 1223 678888888755 6778888899999999887654
No 234
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.24 E-value=2.5e-06 Score=71.58 Aligned_cols=78 Identities=29% Similarity=0.597 Sum_probs=58.4
Q ss_pred CCCeEEEEEECC-CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC---------------------CCCCCCcC-
Q 010824 392 SGKNVLLEFYAP-WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI---------------------PGDTFEVQ- 448 (500)
Q Consensus 392 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------------------~~~~~~i~- 448 (500)
.+++++|.||++ ||++|+...|.+.++.+.++.. ++.++.+..+.++. +.+.+++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 105 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK-GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTI 105 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC-ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCcc
Confidence 478999999999 9999999999999998887543 56666666554311 12357777
Q ss_pred --------cceEEEEEcCCCceE-EecCCCC
Q 010824 449 --------GYPTVFFRSASGKTV-PYEGDRT 470 (500)
Q Consensus 449 --------~~P~~~~~~~~~~~~-~~~g~~~ 470 (500)
++|+++++++++++. +..|...
T Consensus 106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 106 MEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 999999999888855 4445444
No 235
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.24 E-value=1.3e-05 Score=69.15 Aligned_cols=92 Identities=15% Similarity=0.237 Sum_probs=68.9
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh--------------------------hhHHH
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE--------------------------ANKEL 99 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~ 99 (500)
++++++|.|| +.||++|....+.+.++++++...+ +.+..|+++.. +...+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 5689999999 8999999999999999999997654 55555554332 12246
Q ss_pred HHhcCcc------cccEEEEEecCCceeeecCC----CCCHHHHHHHHHhh
Q 010824 100 ASQYEIR------GFPTIKILRNGGKTIQEYKG----PREADGIVEYLKKQ 140 (500)
Q Consensus 100 ~~~~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~ 140 (500)
+++|++. ..|+.++++++|.....+.+ ..+.+++.+.|...
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6677875 57899999988888777743 34667788888654
No 236
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.22 E-value=9.1e-06 Score=72.12 Aligned_cols=86 Identities=15% Similarity=0.267 Sum_probs=67.5
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh---------hhHHHHHhcCcccccEEEEEecC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE---------ANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~---------~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
.++..|++||.+.|+.|+.+.|.+..+++++. +.+..|+.+.. .+..+++++||..+|++++.+.+
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg-----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~ 193 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG-----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPN 193 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC-----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECC
Confidence 46788999999999999999999999999983 45555555431 12239999999999999999987
Q ss_pred Ccee-eecCCCCCHHHHHHHH
Q 010824 118 GKTI-QEYKGPREADGIVEYL 137 (500)
Q Consensus 118 ~~~~-~~~~g~~~~~~l~~~i 137 (500)
+..+ -.-.|..+.++|.+-|
T Consensus 194 ~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 194 TKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCeEEEEeeecCCHHHHHHhh
Confidence 6343 4456889999887643
No 237
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.17 E-value=6.2e-06 Score=70.55 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEE------EEEeCCC-----------------------------
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVI------AKFDATA----------------------------- 437 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~------~~id~~~----------------------------- 437 (500)
+|..+|.|||+||++|+...|.+.++..+ ++-+ .-||.+.
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~ 133 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD 133 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence 89999999999999999999999999653 1222 3334432
Q ss_pred CCCCCCCCCcCcceEE-EEEcCCCceE-EecCCCCHHHHHHHH
Q 010824 438 NDIPGDTFEVQGYPTV-FFRSASGKTV-PYEGDRTKEDIVDFI 478 (500)
Q Consensus 438 ~~~~~~~~~i~~~P~~-~~~~~~~~~~-~~~g~~~~~~l~~~i 478 (500)
+......|++.++|+. +++++.|++. ++.|.++.+++.+.+
T Consensus 134 ~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 134 KGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred cchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 1111235888999888 7998888855 788998888776633
No 238
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.15 E-value=1.5e-05 Score=67.13 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=35.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA 95 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 95 (500)
++..+++.|++.||+.|+...+.+.++.+++.+.+ +.++.|+.+...
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHH
Confidence 34445555569999999999999999999997544 778888766543
No 239
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.15 E-value=9.9e-05 Score=75.58 Aligned_cols=181 Identities=14% Similarity=0.178 Sum_probs=124.6
Q ss_pred CCceEE-EEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC-Ccc-CCCCC
Q 010824 267 PNAKAM-LFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG-QKY-LKPNL 343 (500)
Q Consensus 267 ~~~~~~-l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~-~~y-~~~~~ 343 (500)
..|+.+ +|++ +++.+++..+.+++++.-- ++ +++..-+.. ....|++.+...+. ... |.|-+
T Consensus 18 ~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~s-~k-i~~~~~~~~------------~~~~p~~~~~~~~~~~~i~f~g~P 82 (515)
T TIGR03140 18 ENPVTLVLSAG-SHEKSKELLELLDEIASLS-DK-ISLTQNTAD------------TLRKPSFTILRDGADTGIRFAGIP 82 (515)
T ss_pred CCCEEEEEEeC-CCchhHHHHHHHHHHHHhC-CC-eEEEEecCC------------cCCCCeEEEecCCcccceEEEecC
Confidence 345545 4445 5667788888888888765 34 666443311 12679998874433 112 56888
Q ss_pred ChhhHHHHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcC
Q 010824 344 DADQIAPWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQ 423 (500)
Q Consensus 344 ~~~~i~~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~ 423 (500)
.-..+..|+..+.+-. +.-..|+.++.+.+-.-++..-+-.|+++.|++|......+.+++..-.
T Consensus 83 ~g~Ef~s~i~~i~~~~---------------~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p 147 (515)
T TIGR03140 83 GGHEFTSLVLAILQVG---------------GHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP 147 (515)
T ss_pred CcHHHHHHHHHHHHhc---------------CCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 8889999998877522 1122354444444331234445889999999999888888888877643
Q ss_pred CCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHhhcCC
Q 010824 424 NDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 424 ~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 484 (500)
++..-.+|....++..++|++.++|++++= + + ..+.|..+.+++.+.+.+..+.
T Consensus 148 ---~i~~~~id~~~~~~~~~~~~v~~VP~~~i~--~-~-~~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 148 ---NISHTMIDGALFQDEVEALGIQGVPAVFLN--G-E-EFHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred ---CceEEEEEchhCHHHHHhcCCcccCEEEEC--C-c-EEEecCCCHHHHHHHHhhccCc
Confidence 588888999999999999999999999762 2 2 4477889999988888766433
No 240
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.14 E-value=9.3e-06 Score=57.05 Aligned_cols=60 Identities=35% Similarity=0.757 Sum_probs=49.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHH---HhcCcccccEEEEEecC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELA---SQYEIRGFPTIKILRNG 117 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~---~~~~i~~~P~~~~~~~~ 117 (500)
++.|++.||++|+...+.+.++ +... .++.+..++++.... .. ..+++..+|++++++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDEDPA--LEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCCChH--HhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999988 3333 349999999988876 44 37899999999999876
No 241
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.14 E-value=1.4e-05 Score=64.12 Aligned_cols=73 Identities=30% Similarity=0.717 Sum_probs=60.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecC-hhhhHHHHHhcC--cccccEEEEEecCCceeeec
Q 010824 48 HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDAN-EEANKELASQYE--IRGFPTIKILRNGGKTIQEY 124 (500)
Q Consensus 48 ~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~~--i~~~P~~~~~~~~~~~~~~~ 124 (500)
++++++.||++||++|+.+.|.+.++++.+... +.+..+|.. .... +...++ +..+|++.++.++.. ...+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~~~--~~~~~~~~~~~~p~~~~~~~~~~-~~~~ 105 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPD--LAAEFGVAVRSIPTLLLFKDGKE-VDRL 105 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCChH--HHHHHhhhhccCCeEEEEeCcch-hhhh
Confidence 778999999999999999999999999998763 888999986 5555 889999 899999998887633 4444
Q ss_pred CC
Q 010824 125 KG 126 (500)
Q Consensus 125 ~g 126 (500)
.+
T Consensus 106 ~~ 107 (127)
T COG0526 106 VG 107 (127)
T ss_pred hh
Confidence 44
No 242
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.14 E-value=2.1e-05 Score=66.60 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=66.2
Q ss_pred EEcCccChhhhhccCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----------------
Q 010824 34 LTLDHSNFSDTVSKHNFIVVEFYAP-WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA----------------- 95 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~lv~f~~~-~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------- 95 (500)
..++.+.+...--++++++|.||+. ||+.|....+.+.++++.+++.+ +.+..|+.+...
T Consensus 16 ~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~~~~~~~~~~~~~~~~~~l~ 93 (154)
T PRK09437 16 PDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDKPEKLSRFAEKELLNFTLLS 93 (154)
T ss_pred eCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCHHHHHHHHHHhCCCCeEEE
Confidence 3344443443334678899999975 78899999999999999997654 666666554321
Q ss_pred --hHHHHHhcCcccc------------cEEEEEecCCceeeecCCCCCHHH
Q 010824 96 --NKELASQYEIRGF------------PTIKILRNGGKTIQEYKGPREADG 132 (500)
Q Consensus 96 --~~~~~~~~~i~~~------------P~~~~~~~~~~~~~~~~g~~~~~~ 132 (500)
...+.++||+.+. |+.++++.+|+....|.|....+.
T Consensus 94 D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 94 DEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred CCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchh
Confidence 2236677776543 677888877788888888654444
No 243
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=98.14 E-value=2.4e-05 Score=58.05 Aligned_cols=83 Identities=20% Similarity=0.295 Sum_probs=65.9
Q ss_pred ccccCChhhHhhhhccCCeEEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccC-CCc
Q 010824 145 SAEIKSAEDASSFIGEKKVVIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPF-DEL 223 (500)
Q Consensus 145 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~ 223 (500)
++++.+.+++.. +..++..+|++|.+.++..+..|+++|..+++++.|++...+... . ..-..+.+++||+. ...
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~~-~--~~~~~~~~i~frp~~~~~ 76 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVTK-P--ERPPGDNIIYFPPGHNAP 76 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEeccccc-c--ccCCCCCeEEECCCCCCC
Confidence 456778888887 788999999999999999999999999999999999988865552 2 22334678888875 333
Q ss_pred c-cccCCCC
Q 010824 224 F-VDFKDFK 231 (500)
Q Consensus 224 ~-~~~~~~~ 231 (500)
. +|.|.++
T Consensus 77 ~~~y~G~~t 85 (91)
T cd03070 77 DMVYLGSLT 85 (91)
T ss_pred ceEEccCCC
Confidence 3 8899884
No 244
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.11 E-value=2e-05 Score=68.85 Aligned_cols=91 Identities=16% Similarity=0.191 Sum_probs=67.1
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-----------------------hhHHHHHh
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-----------------------ANKELASQ 102 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~ 102 (500)
.+++++|.|| +.||+.|....+.+.++.+++.+.+ +.+..|+++.. +...+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 6789999999 9999999999999999999997655 44444443321 12358888
Q ss_pred cCcc------cccEEEEEecCCceeeecCC----CCCHHHHHHHHHh
Q 010824 103 YEIR------GFPTIKILRNGGKTIQEYKG----PREADGIVEYLKK 139 (500)
Q Consensus 103 ~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~ 139 (500)
||+. ..|+.++++.+|.....+.+ .+..+++++.|..
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 9986 46999999887787665532 2577777777753
No 245
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.09 E-value=2.7e-05 Score=56.81 Aligned_cols=72 Identities=24% Similarity=0.509 Sum_probs=54.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCC-CCCHHH
Q 010824 54 EFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG-PREADG 132 (500)
Q Consensus 54 ~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g-~~~~~~ 132 (500)
.+++++|++|..+...+..++..+. +.+-.+|....+. + .+|||.++|++++ +|+. .+.| ..+.++
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~~~~~~--~-~~ygv~~vPalvI---ng~~--~~~G~~p~~~e 70 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDIEDFEE--I-EKYGVMSVPALVI---NGKV--VFVGRVPSKEE 70 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEETTTHHH--H-HHTT-SSSSEEEE---TTEE--EEESS--HHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEccCHHH--H-HHcCCCCCCEEEE---CCEE--EEEecCCCHHH
Confidence 3468889999999999999988872 6666667655554 5 9999999999965 3454 7889 688899
Q ss_pred HHHHHH
Q 010824 133 IVEYLK 138 (500)
Q Consensus 133 l~~~i~ 138 (500)
|.+||+
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988874
No 246
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.09 E-value=4.4e-05 Score=66.46 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=63.9
Q ss_pred CCeE-EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC------------------C-----CCCCC-----
Q 010824 393 GKNV-LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA------------------N-----DIPGD----- 443 (500)
Q Consensus 393 ~~~~-~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~------------------~-----~~~~~----- 443 (500)
++++ ++.++++||++|+...|.++++.+.+++. ++.++.|+++. . +...+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~~g 118 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNG 118 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEecCC
Confidence 5544 55669999999999999999999999653 68888876531 0 00000
Q ss_pred --------------------CCCcCcceE---EEEEcCCCceE-EecCCCCHHHHHHHHHhhcC
Q 010824 444 --------------------TFEVQGYPT---VFFRSASGKTV-PYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 444 --------------------~~~i~~~P~---~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~~~ 483 (500)
.+.+.++|+ .+++++.|+++ ++.|..+.+.+.+.|.+.+.
T Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 119 ENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred CCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHhc
Confidence 013447794 57887777755 77898999999998887654
No 247
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.09 E-value=1.3e-05 Score=67.53 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=59.7
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-------------------C----CC--------
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-------------------D----IP-------- 441 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------~----~~-------- 441 (500)
++.++|.||++||+ |+...|.++++.+.+++. ++.++.|+++.. . ..
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~~~ 99 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDR-GLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGE 99 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCC-CEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEeccCC
Confidence 68999999999999 999999999999999653 688887765310 0 00
Q ss_pred --CCCCC--cCcce-----------EEEEEcCCCceE-EecCCCCHHHHHHH
Q 010824 442 --GDTFE--VQGYP-----------TVFFRSASGKTV-PYEGDRTKEDIVDF 477 (500)
Q Consensus 442 --~~~~~--i~~~P-----------~~~~~~~~~~~~-~~~g~~~~~~l~~~ 477 (500)
...|+ +.++| +.++++++|+++ ++.|..+.++|.+.
T Consensus 100 ~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 100 NAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 00111 23566 688887777744 78898988877654
No 248
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.08 E-value=1.9e-05 Score=57.25 Aligned_cols=71 Identities=24% Similarity=0.483 Sum_probs=52.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcccccEEEEEecCCceeeecCCCCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIRGFPTIKILRNGGKTIQEYKGPRE 129 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~ 129 (500)
+..|+++||++|+...+.+... + +.+..+|.+.++. .++++.+++.++|++++. | +. ..| .+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~~---~~g-~~ 65 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK-------G--IAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-KI---IVG-FD 65 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC-------C--CeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-EE---Eee-CC
Confidence 5689999999999998777541 2 6778888876543 346788999999999874 3 32 555 57
Q ss_pred HHHHHHHHH
Q 010824 130 ADGIVEYLK 138 (500)
Q Consensus 130 ~~~l~~~i~ 138 (500)
.+.|.++++
T Consensus 66 ~~~i~~~i~ 74 (74)
T TIGR02196 66 PEKLDQLLE 74 (74)
T ss_pred HHHHHHHhC
Confidence 788888763
No 249
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.07 E-value=4.6e-05 Score=65.28 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=59.9
Q ss_pred cCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------------------hHHHHHhcC
Q 010824 47 KHNFIVVEFYAPW-CGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------------------NKELASQYE 104 (500)
Q Consensus 47 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------------------~~~~~~~~~ 104 (500)
++++++|.||+.| |++|....+.+.++++++. + +.+..|+++... ...+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 6789999999999 9999999999999998873 2 667767665411 114666777
Q ss_pred ccccc---------EEEEEecCCceeeecCC-----CCCHHHHHHHH
Q 010824 105 IRGFP---------TIKILRNGGKTIQEYKG-----PREADGIVEYL 137 (500)
Q Consensus 105 i~~~P---------~~~~~~~~~~~~~~~~g-----~~~~~~l~~~i 137 (500)
+...| +.++++.+|+..+.+.+ ....+.+++.+
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l 165 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAAL 165 (167)
T ss_pred CeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHh
Confidence 76666 77777766666555422 23445555544
No 250
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=7.5e-05 Score=67.31 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=88.0
Q ss_pred cccCceEEcCccChhhhhc---cCCeEEEEEECC----CChhhhhhhHHHHHHHHHhcCC-----CCCeEEEEEecChhh
Q 010824 28 ESKEFVLTLDHSNFSDTVS---KHNFIVVEFYAP----WCGHCKKLAPEYEKAASELSSH-----DPPVVLAKVDANEEA 95 (500)
Q Consensus 28 ~~~~~v~~l~~~~~~~~~~---~~~~~lv~f~~~----~c~~C~~~~~~~~~~~~~~~~~-----~~~v~~~~vd~~~~~ 95 (500)
.+.+.|..+++++|.+++. ++-..+|+|.|. .|.-|+.+..+|.-++..+... +.++-|+.||.++.+
T Consensus 37 ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p 116 (331)
T KOG2603|consen 37 TSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP 116 (331)
T ss_pred cCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH
Confidence 3567789999999999994 333567888764 8999999999999999988654 347889999999887
Q ss_pred hHHHHHhcCcccccEEEEEecC-Ccee--ee---cCCCCCHHHHHHHHHhhcCC
Q 010824 96 NKELASQYEIRGFPTIKILRNG-GKTI--QE---YKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 96 ~~~~~~~~~i~~~P~~~~~~~~-~~~~--~~---~~g~~~~~~l~~~i~~~~~~ 143 (500)
. +-+++++...|++++|.+. |... .. ++-....+.+.+|+.+.+.-
T Consensus 117 ~--~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 117 Q--VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred H--HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 7 9999999999999999653 1111 11 22234489999999887643
No 251
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.01 E-value=3.2e-05 Score=64.47 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.5
Q ss_pred cCCeEEEEEECCCChh-hhhhhHHHHHHHHHhcCCC-CCeEEEEEecC
Q 010824 47 KHNFIVVEFYAPWCGH-CKKLAPEYEKAASELSSHD-PPVVLAKVDAN 92 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~-C~~~~~~~~~~~~~~~~~~-~~v~~~~vd~~ 92 (500)
++++++|.||++||+. |....+.+.++++++.+.+ .++.+..|+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999997 9999999999999997643 34777777654
No 252
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.01 E-value=3e-05 Score=70.77 Aligned_cols=101 Identities=22% Similarity=0.413 Sum_probs=73.3
Q ss_pred ceEEcCc-cChhhhhcc---CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 32 FVLTLDH-SNFSDTVSK---HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 32 ~v~~l~~-~~~~~~~~~---~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
.|..++. +.|-..+.+ +..++|.||.+.++.|..+...+..+|.++.. ++|++|.....+ ++..|.+..
T Consensus 126 ~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~---~~~~f~~~~ 198 (265)
T PF02114_consen 126 EVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP---ASENFPDKN 198 (265)
T ss_dssp SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC---TTTTS-TTC
T ss_pred eEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC---cccCCcccC
Confidence 4667754 677777743 44789999999999999999999999999754 999999987654 678899999
Q ss_pred ccEEEEEecCCceeeecCC-------CCCHHHHHHHHHhh
Q 010824 108 FPTIKILRNGGKTIQEYKG-------PREADGIVEYLKKQ 140 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~g-------~~~~~~l~~~i~~~ 140 (500)
.|++++|++| ..+..+.| ..+...|..|+.++
T Consensus 199 LPtllvYk~G-~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 199 LPTLLVYKNG-DLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp -SEEEEEETT-EEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CCEEEEEECC-EEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 9999999975 66666544 35566777777754
No 253
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.01 E-value=1e-05 Score=58.71 Aligned_cols=69 Identities=20% Similarity=0.437 Sum_probs=52.1
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC----CCCCCcCcceEEEEEcCCCceEEecCCCCHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP----GDTFEVQGYPTVFFRSASGKTVPYEGDRTKE 472 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~ 472 (500)
+.+|+++||++|+...+.|.+. ++.+..+|++.++.. .+.+++.++|++.+. | + .+.| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~-~--~~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H-K--IIVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C-E--EEee-CCHH
Confidence 5689999999999998887652 578888999876543 344788999999875 3 2 2555 5778
Q ss_pred HHHHHHH
Q 010824 473 DIVDFIE 479 (500)
Q Consensus 473 ~l~~~i~ 479 (500)
.|.++|+
T Consensus 68 ~i~~~i~ 74 (74)
T TIGR02196 68 KLDQLLE 74 (74)
T ss_pred HHHHHhC
Confidence 8888874
No 254
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.99 E-value=1.6e-05 Score=63.73 Aligned_cols=84 Identities=32% Similarity=0.614 Sum_probs=66.2
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC-CCCCCCCCCC--cCcceEEEEEcCCCceEEecC--
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT-ANDIPGDTFE--VQGYPTVFFRSASGKTVPYEG-- 467 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~~~~~--i~~~P~~~~~~~~~~~~~~~g-- 467 (500)
++.+++.||++||++|+.+.|.+..++..+.. .+.+..+|.. .+......++ +..+|+++++..+.....+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 109 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGK 109 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhhcc
Confidence 77889998999999999999999999999876 6899999997 6777777788 899999998876665444444
Q ss_pred CCCHHHHHHHH
Q 010824 468 DRTKEDIVDFI 478 (500)
Q Consensus 468 ~~~~~~l~~~i 478 (500)
......+..-.
T Consensus 110 ~~~~~~~~~~~ 120 (127)
T COG0526 110 VLPKEALIDAL 120 (127)
T ss_pred cCCHHHHHHHh
Confidence 44555554443
No 255
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.99 E-value=2.5e-05 Score=69.33 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=62.7
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC-----------CCCCCCCCCcCcceEEEEEcCCC-
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA-----------NDIPGDTFEVQGYPTVFFRSASG- 460 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------~~~~~~~~~i~~~P~~~~~~~~~- 460 (500)
++.-+++||.+.|++|+.+.|.+..+++.++ +.+..|+++. +....+++++..+|+++++..+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg----~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~ 195 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYG----FSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTK 195 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhC----CEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCC
Confidence 6788999999999999999999999999985 4444455542 23344568999999999997766
Q ss_pred ceE-EecCCCCHHHHHHH
Q 010824 461 KTV-PYEGDRTKEDIVDF 477 (500)
Q Consensus 461 ~~~-~~~g~~~~~~l~~~ 477 (500)
+.. .-.|.++.++|.+=
T Consensus 196 ~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 196 KWYPVSQGFMSLDELEDR 213 (215)
T ss_pred eEEEEeeecCCHHHHHHh
Confidence 444 34488999888753
No 256
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.98 E-value=6.2e-05 Score=63.54 Aligned_cols=89 Identities=20% Similarity=0.252 Sum_probs=65.0
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC---C--CCC-------------------------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA---N--DIP------------------------- 441 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~---~--~~~------------------------- 441 (500)
.++.++|.|+++||++|+...|.+.++..+++.. ++.++.+++.. . +..
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~ 99 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILG 99 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCC
Confidence 3678999999999999999999999999999753 68888887511 0 000
Q ss_pred ---CC--CCCc---CcceE----EEEEcCCCceE-EecCCCCHHHHHHHHHhh
Q 010824 442 ---GD--TFEV---QGYPT----VFFRSASGKTV-PYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 442 ---~~--~~~i---~~~P~----~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~ 481 (500)
.. .+.+ ..+|+ .++++++|++. ++.|..+.++|.+.|++.
T Consensus 100 ~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 100 SEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 00 0111 14786 78887777755 788999999999988764
No 257
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.98 E-value=7.4e-06 Score=66.76 Aligned_cols=76 Identities=25% Similarity=0.526 Sum_probs=57.5
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCC-CceEEEEEeCCCCCC-------------------------CCCCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQND-ADVVIAKFDATANDI-------------------------PGDTF 445 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~-------------------------~~~~~ 445 (500)
.+|.+.++|.+.||++||.+-|.+.++..+.+.+ ..+.++.|..+.+.. .+++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4699999999999999999999999998888553 235555555544311 13468
Q ss_pred CcCcceEEEEEcCCCceEEecC
Q 010824 446 EVQGYPTVFFRSASGKTVPYEG 467 (500)
Q Consensus 446 ~i~~~P~~~~~~~~~~~~~~~g 467 (500)
.+.++|++.+...++..+.-.|
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~d~ 133 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTEDA 133 (157)
T ss_pred ccCcCceeEEecCCCCEehHhh
Confidence 8999999999998887665443
No 258
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.97 E-value=5.9e-05 Score=68.07 Aligned_cols=91 Identities=14% Similarity=0.215 Sum_probs=70.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------hHHHHHhcCcccccEEEEEecC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------NKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
.++..|++||.+.|+.|+++.|.+..+++++. +.+..|+.+... +...++++|+..+|++++.+.+
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg-----i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG-----ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPK 223 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECC
Confidence 34588999999999999999999999999984 455555555431 1238899999999999999987
Q ss_pred Cceee-ecCCCCCHHHHHHHHHhhcC
Q 010824 118 GKTIQ-EYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 118 ~~~~~-~~~g~~~~~~l~~~i~~~~~ 142 (500)
+.... .=.|..+.++|.+-+.....
T Consensus 224 t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 224 SQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred CCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 44433 44688999999887776543
No 259
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.97 E-value=1.8e-05 Score=57.96 Aligned_cols=70 Identities=17% Similarity=0.318 Sum_probs=48.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC-----CCcCcceEEEEEcCCCceEEecCCCCH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT-----FEVQGYPTVFFRSASGKTVPYEGDRTK 471 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-----~~i~~~P~~~~~~~~~~~~~~~g~~~~ 471 (500)
++.|+++||++|+.+++.|.++ ++.+..+|++.++...+. ++..++|++ +++.| ... ...+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~--------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g-~~l---~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL--------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADG-SFL---TNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCC-eEe---cCCCH
Confidence 5789999999999999988765 244556888877555443 378899997 56444 322 24555
Q ss_pred HHHHHHHH
Q 010824 472 EDIVDFIE 479 (500)
Q Consensus 472 ~~l~~~i~ 479 (500)
.++.+.|+
T Consensus 69 ~~~~~~l~ 76 (77)
T TIGR02200 69 AQVKAKLQ 76 (77)
T ss_pred HHHHHHhh
Confidence 66666654
No 260
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.95 E-value=2.3e-05 Score=54.97 Aligned_cols=60 Identities=30% Similarity=0.636 Sum_probs=49.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC---CCCcCcceEEEEEcCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD---TFEVQGYPTVFFRSAS 459 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~---~~~i~~~P~~~~~~~~ 459 (500)
++.|+++||++|+.+.+.+.++ ...+. ++.+..+|++....... .+++..+|++++++.|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCC--CcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 33333 69999999998876654 5788999999999766
No 261
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.94 E-value=3.2e-05 Score=64.55 Aligned_cols=89 Identities=17% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCeEEEe-ccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEE
Q 010824 375 EPVKVLV-ADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTV 453 (500)
Q Consensus 375 ~~~~~l~-~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~ 453 (500)
+...++. ..+|-..+ .....|++.||.+.-..|+.+...|+.+|..+= ...|++||+++-+.++.+++|.-+|++
T Consensus 66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~---eTrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV---ETRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhcc---cceEEEEecccCceeeeeeeeeEeeeE
Confidence 3455664 67777777 567789999999999999999999999998875 489999999999999999999999999
Q ss_pred EEEcCCCceEEecC
Q 010824 454 FFRSASGKTVPYEG 467 (500)
Q Consensus 454 ~~~~~~~~~~~~~g 467 (500)
++|.+|..+..+.|
T Consensus 142 ~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVG 155 (211)
T ss_pred EEEEcCEEEEEEee
Confidence 99987776666654
No 262
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.94 E-value=7.2e-05 Score=62.39 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=56.5
Q ss_pred cCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------------------h-HHHHHhcC
Q 010824 47 KHNFIVVEFYAPW-CGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--------------------N-KELASQYE 104 (500)
Q Consensus 47 ~~~~~lv~f~~~~-c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------~-~~~~~~~~ 104 (500)
.++++++.||+.| |++|....+.+.++++++.+ +.+..|+.+... . ..++++||
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~----~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDN----TVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCC----CEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 5789999999998 69999999999999999742 667777764321 1 34667777
Q ss_pred ccc------ccEEEEEecCCceeeecCC
Q 010824 105 IRG------FPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 105 i~~------~P~~~~~~~~~~~~~~~~g 126 (500)
+.. .|+.++++.+|+....+.|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 653 5788888877777666654
No 263
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=8.6e-05 Score=59.62 Aligned_cols=90 Identities=18% Similarity=0.288 Sum_probs=68.5
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHH---HHHHcCCCCceEEEEEeCCCCCC----------------CCCCCCcCcce
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDE---VAVSYQNDADVVIAKFDATANDI----------------PGDTFEVQGYP 451 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~---~~~~~~~~~~~~~~~id~~~~~~----------------~~~~~~i~~~P 451 (500)
-+++..+++|-++.|++|..+...+.. +...+.. ++.++++|++.... +++.++++++|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 468899999999999999988875543 3444444 68899998865422 24568899999
Q ss_pred EEEEEcCCCc-eEEecCCCCHHHHHHHHHhhc
Q 010824 452 TVFFRSASGK-TVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 452 ~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~~ 482 (500)
++++|++.|+ +....|.+..+++..-++-..
T Consensus 118 tfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa 149 (182)
T COG2143 118 TFVFFDKTGKTILELPGYMPPEQFLAVLKYVA 149 (182)
T ss_pred eEEEEcCCCCEEEecCCCCCHHHHHHHHHHHH
Confidence 9999988877 557889999888877666443
No 264
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.93 E-value=8.8e-05 Score=62.36 Aligned_cols=77 Identities=10% Similarity=0.163 Sum_probs=55.0
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------h--HHHHHhcCcc
Q 010824 49 NFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------N--KELASQYEIR 106 (500)
Q Consensus 49 ~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------~--~~~~~~~~i~ 106 (500)
++++|.|| ++||+.|....+.+.++++++.+.+ +.+..|+.+... . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 77788887 8999999999999999999997544 666666544311 1 3466677766
Q ss_pred c------ccEEEEEecCCceeeecCCC
Q 010824 107 G------FPTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 107 ~------~P~~~~~~~~~~~~~~~~g~ 127 (500)
. .|+.++++.+|+....+.|.
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecC
Confidence 3 23778887777777776664
No 265
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.92 E-value=0.00015 Score=64.13 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=68.5
Q ss_pred cCCeEEE-EEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-------------------------hhHHHH
Q 010824 47 KHNFIVV-EFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-------------------------ANKELA 100 (500)
Q Consensus 47 ~~~~~lv-~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~ 100 (500)
+++++++ .|++.||+.|....+.+.+.+++++..+ +.+..|+++.. +...++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 5666555 5789999999999999999999997654 55555554421 123577
Q ss_pred HhcCcc------cccEEEEEecCCceeeec----CCCCCHHHHHHHHHhhc
Q 010824 101 SQYEIR------GFPTIKILRNGGKTIQEY----KGPREADGIVEYLKKQS 141 (500)
Q Consensus 101 ~~~~i~------~~P~~~~~~~~~~~~~~~----~g~~~~~~l~~~i~~~~ 141 (500)
+.||+. .+|+.++++++|+..... .+.++.+++++.++...
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 888874 589999999887765443 44589999998887644
No 266
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.92 E-value=6.6e-05 Score=62.34 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=55.8
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------------------hHHHHHhcCc
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--------------------NKELASQYEI 105 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------~~~~~~~~~i 105 (500)
.+++++|.|| +.||+.|....+.+.++++++...+ +.+..|..+... ...+.+.+|+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6888999999 7899999999999999999996433 666666654321 1235555665
Q ss_pred cccc---------EEEEEecCCceeeecCCCC
Q 010824 106 RGFP---------TIKILRNGGKTIQEYKGPR 128 (500)
Q Consensus 106 ~~~P---------~~~~~~~~~~~~~~~~g~~ 128 (500)
...| +.++.+.+|+....+.|..
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecCC
Confidence 5444 6667776666666666653
No 267
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.91 E-value=0.00011 Score=57.78 Aligned_cols=103 Identities=9% Similarity=0.053 Sum_probs=83.1
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHH---hcCCCCCeEEEEEecChhhhHHHHHhcCccc--
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASE---LSSHDPPVVLAKVDANEEANKELASQYEIRG-- 107 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~---~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~-- 107 (500)
|..++.++...+...+.+..++|+++ ..-..+...+.++|++ ++++ +.|+.+|.+.... ..+.+|++.
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgk---i~Fv~~d~~~~~~--~~~~fgl~~~~ 73 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGA---INFLTADGDKFRH--PLLHLGKTPAD 73 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCce---EEEEEEechHhhh--HHHHcCCCHhH
Confidence 45688899999988887777777744 3346788999999999 7766 9999999999888 999999997
Q ss_pred ccEEEEEecCCceeee-cCCCCCHHHHHHHHHhhcC
Q 010824 108 FPTIKILRNGGKTIQE-YKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~-~~g~~~~~~l~~~i~~~~~ 142 (500)
.|.+.+...++...+. +.+..+.+.|.+|+...+.
T Consensus 74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 8999999875422333 6688999999999998764
No 268
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.91 E-value=0.00013 Score=63.35 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=68.4
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-----------------------hhHHHHHh
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-----------------------ANKELASQ 102 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~ 102 (500)
.++++++.|| +.||+.|....+.+.+.++++.+.+ +.+..|+.+.. +...+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5678999999 9999999999999999999997654 44555554331 12358888
Q ss_pred cCc----ccc--cEEEEEecCCceeeecC----CCCCHHHHHHHHHhh
Q 010824 103 YEI----RGF--PTIKILRNGGKTIQEYK----GPREADGIVEYLKKQ 140 (500)
Q Consensus 103 ~~i----~~~--P~~~~~~~~~~~~~~~~----g~~~~~~l~~~i~~~ 140 (500)
||+ .+. |+.++++.+|+..+.+. ..++.+++++.+...
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 998 356 99999998877655442 236888888888653
No 269
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.90 E-value=0.00032 Score=60.47 Aligned_cols=96 Identities=16% Similarity=0.213 Sum_probs=64.8
Q ss_pred EEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------hhhHHHHH-hc
Q 010824 34 LTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE---------EANKELAS-QY 103 (500)
Q Consensus 34 ~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~---------~~~~~~~~-~~ 103 (500)
..++.+.+...--.++++||.|+|+||+.|.+ .+.++++++++++.+ +.+..+.|++ +...++|+ ++
T Consensus 11 ~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~g--l~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~ 87 (183)
T PRK10606 11 TTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQG--FVVLGFPCNQFLGQEPGSDEEIKTYCRTTW 87 (183)
T ss_pred ECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCC--eEEEEeeccccccCCCCCHHHHHHHHHHcc
Confidence 34444444444446899999999999999975 689999999998655 8899999853 22334676 67
Q ss_pred CcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcC
Q 010824 104 EIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSG 142 (500)
Q Consensus 104 ~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 142 (500)
++. +|.+-=..-+| .....+.+|+.+..+
T Consensus 88 g~~-Fpv~~k~dvnG---------~~~~pl~~~Lk~~~~ 116 (183)
T PRK10606 88 GVT-FPMFSKIEVNG---------EGRHPLYQKLIAAAP 116 (183)
T ss_pred CCC-ceeEEEEccCC---------CCCCHHHHHHHHhCC
Confidence 764 56443333222 234567778876654
No 270
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.90 E-value=8.7e-05 Score=57.18 Aligned_cols=89 Identities=17% Similarity=0.326 Sum_probs=71.1
Q ss_pred cChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCC
Q 010824 39 SNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGG 118 (500)
Q Consensus 39 ~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~ 118 (500)
+.++.++..+++++|-|+..+|+ .....|.++|..+++. +.|+.+.- .. +++++++.. |++.+|++..
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~---~~F~~~~~---~~--~~~~~~~~~-~~i~l~~~~~ 75 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD---YGFGHTSD---KE--VAKKLKVKP-GSVVLFKPFE 75 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC---CeEEEECh---HH--HHHHcCCCC-CceEEeCCcc
Confidence 34666788899999999999887 4678999999998764 88888772 23 778888764 9999998754
Q ss_pred ceeeecCCCCCHHHHHHHHHh
Q 010824 119 KTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 119 ~~~~~~~g~~~~~~l~~~i~~ 139 (500)
.....|.|..+.+.|.+||..
T Consensus 76 ~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 76 EEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cCCccCCCCCCHHHHHHHHHh
Confidence 455679999999999999874
No 271
>PRK15000 peroxidase; Provisional
Probab=97.89 E-value=0.00011 Score=64.84 Aligned_cols=91 Identities=15% Similarity=0.253 Sum_probs=70.0
Q ss_pred cCCeEEEEEECC-CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------------------------hHHH
Q 010824 47 KHNFIVVEFYAP-WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--------------------------NKEL 99 (500)
Q Consensus 47 ~~~~~lv~f~~~-~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------------~~~~ 99 (500)
+++++++.||+. ||+.|....+.+.+.+++++..+ +.+..|+++... ...+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 578999999984 99999999999999999998655 556666555311 1247
Q ss_pred HHhcCcc------cccEEEEEecCCceeeecCC----CCCHHHHHHHHHh
Q 010824 100 ASQYEIR------GFPTIKILRNGGKTIQEYKG----PREADGIVEYLKK 139 (500)
Q Consensus 100 ~~~~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~ 139 (500)
++.||+. ..|+.++++++|+....+.| .++.+++++.++.
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 7778876 68999999988887666554 3678888888865
No 272
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.1e-05 Score=68.36 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=87.9
Q ss_pred CCCeEEEeccchhhhhhcC--CCeEEEEEECC----CChhHhhhhHHHHHHHHHcCC------CCceEEEEEeCCCCCCC
Q 010824 374 NEPVKVLVADSLQDMVFNS--GKNVLLEFYAP----WCGHCKKLAPILDEVAVSYQN------DADVVIAKFDATANDIP 441 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~~~~--~~~~~v~f~~~----~c~~c~~~~~~~~~~~~~~~~------~~~~~~~~id~~~~~~~ 441 (500)
...|..++++.|.+++... +-.++|+|+|- .|.-|+++...+..+++.+.. .+++-|..||.++.+..
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 3458899999999999755 45688888874 599999999999999988832 24789999999999999
Q ss_pred CCCCCcCcceEEEEEcCC-Cce---EEec---CCCCHHHHHHHHHhhcCC
Q 010824 442 GDTFEVQGYPTVFFRSAS-GKT---VPYE---GDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 442 ~~~~~i~~~P~~~~~~~~-~~~---~~~~---g~~~~~~l~~~i~~~~~~ 484 (500)
.+++++.++|++++|++. +.. ..++ -...+|++.+|+.+...-
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 999999999999999443 222 1222 224499999999987653
No 273
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.85 E-value=8.3e-05 Score=54.43 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=44.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHh-----cCcccccEEEEEecCCceeeecCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQ-----YEIRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~-----~~i~~~P~~~~~~~~~~~~~~~~g 126 (500)
++.|+++||++|+++.+.+.+. + +.+..+|.+.++. .... +++.++|++ ++.+| ....
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~--~~~~~~~~~~~~~~vP~i-~~~~g-~~l~---- 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEG--AADRVVSVNNGNMTVPTV-KFADG-SFLT---- 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHh--HHHHHHHHhCCCceeCEE-EECCC-eEec----
Confidence 5789999999999998877643 2 4455677766554 3333 388999997 46654 4333
Q ss_pred CCCHHHHHHHH
Q 010824 127 PREADGIVEYL 137 (500)
Q Consensus 127 ~~~~~~l~~~i 137 (500)
..+..++.+.+
T Consensus 65 ~~~~~~~~~~l 75 (77)
T TIGR02200 65 NPSAAQVKAKL 75 (77)
T ss_pred CCCHHHHHHHh
Confidence 33444554444
No 274
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.84 E-value=0.00011 Score=54.33 Aligned_cols=98 Identities=17% Similarity=0.294 Sum_probs=77.5
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc----cccEE-
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR----GFPTI- 111 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~----~~P~~- 111 (500)
+.++|.+++.....++|.|..+.-..- .....+.++|+..+|. -.++-|||.+.+...+|+++.+. .-|..
T Consensus 8 d~KdfKKLLRTr~NVLvLy~ks~k~a~-~~Lk~~~~~A~~vkG~---gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~L 83 (112)
T cd03067 8 DHKDFKKLLRTRNNVLVLYSKSAKSAE-ALLKLLSDVAQAVKGQ---GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVEL 83 (112)
T ss_pred chHHHHHHHhhcCcEEEEEecchhhHH-HHHHHHHHHHHHhcCc---eeEEEEecCChHHHHHHHHHccCCCCCCCcchh
Confidence 446899999888889999987744443 3447899999999887 67899999997777899999998 55544
Q ss_pred EEEecCCceeeecCCCCCHHHHHHHHHh
Q 010824 112 KILRNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
.-|.+ |..-..|+...+...+++|+..
T Consensus 84 kHYKd-G~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 84 KHYKD-GDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred hcccC-CCccccccchhhHHHHHHHhhC
Confidence 44554 4666789999999999999864
No 275
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.83 E-value=4e-05 Score=55.89 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=52.9
Q ss_pred EEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecC-CCCHHHHHHH
Q 010824 399 EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEG-DRTKEDIVDF 477 (500)
Q Consensus 399 ~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g-~~~~~~l~~~ 477 (500)
.+++++|++|..+...+++++..++ +.+-.+|.+..+.. .+|++.++|+++ . +| + +++.| ..+.++|.+|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~----i~~ei~~~~~~~~~-~~ygv~~vPalv-I-ng-~-~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG----IEVEIIDIEDFEEI-EKYGVMSVPALV-I-NG-K-VVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT----EEEEEEETTTHHHH-HHTT-SSSSEEE-E-TT-E-EEEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC----CeEEEEEccCHHHH-HHcCCCCCCEEE-E-CC-E-EEEEecCCCHHHHHHH
Confidence 3478889999999999999988874 44455666555555 669999999994 4 23 3 67888 7999999999
Q ss_pred HH
Q 010824 478 IE 479 (500)
Q Consensus 478 i~ 479 (500)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 85
No 276
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.00014 Score=55.64 Aligned_cols=81 Identities=17% Similarity=0.381 Sum_probs=57.1
Q ss_pred cchhhhhh--cCCCeEEEEEEC--------CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC---CC----CCCCC
Q 010824 383 DSLQDMVF--NSGKNVLLEFYA--------PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN---DI----PGDTF 445 (500)
Q Consensus 383 ~~~~~~~~--~~~~~~~v~f~~--------~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~----~~~~~ 445 (500)
++|.+++. .+++.++|+|++ +|||.|.+..|.+.+..+.... ++.|+++++.+- .+ .....
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCC
Confidence 44555553 245669999987 6899999999999999886655 699999998653 11 22234
Q ss_pred Cc-CcceEEEEEcCCCceEEecC
Q 010824 446 EV-QGYPTVFFRSASGKTVPYEG 467 (500)
Q Consensus 446 ~i-~~~P~~~~~~~~~~~~~~~g 467 (500)
++ .++||++=|.. .+.+..|
T Consensus 91 ~~lt~vPTLlrw~~--~~~rL~~ 111 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR--QPQRLDG 111 (128)
T ss_pred CceeecceeeEEcC--ccccchH
Confidence 44 89999999963 3344444
No 277
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.82 E-value=0.00014 Score=65.21 Aligned_cols=89 Identities=12% Similarity=0.150 Sum_probs=68.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------hHHHHHhcCcccccEEEEEecCC
Q 010824 48 HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------NKELASQYEIRGFPTIKILRNGG 118 (500)
Q Consensus 48 ~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------~~~~~~~~~i~~~P~~~~~~~~~ 118 (500)
+++.|++||.+.|+.|+++.|.+...++++. +.+..|+.+... +...++++||..+|++++.+.++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 4588999999999999999999999999984 444444444311 12267899999999999999875
Q ss_pred cee-eecCCCCCHHHHHHHHHhhc
Q 010824 119 KTI-QEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 119 ~~~-~~~~g~~~~~~l~~~i~~~~ 141 (500)
... -.-.|..+.++|.+-+....
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 443 34568899999988776544
No 278
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.82 E-value=3.7e-05 Score=63.85 Aligned_cols=87 Identities=18% Similarity=0.351 Sum_probs=57.1
Q ss_pred CceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhH-HH--HHHHHHhcCCCCCeEEEEEecChhhhHHHHHhc----
Q 010824 31 EFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAP-EY--EKAASELSSHDPPVVLAKVDANEEANKELASQY---- 103 (500)
Q Consensus 31 ~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~-~~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~---- 103 (500)
-.....+++.|+.+..++|++||.++.+||..|+.+.. .| .++++.++.. ++-+.||.+.-++ +...|
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDree~Pd--id~~y~~~~ 94 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDREERPD--IDKIYMNAV 94 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEETTT-HH--HHHHHHHHH
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEeccccCcc--HHHHHHHHH
Confidence 34456777889999999999999999999999998874 22 3456666554 7778888776666 77777
Q ss_pred ----CcccccEEEEEecCCceee
Q 010824 104 ----EIRGFPTIKILRNGGKTIQ 122 (500)
Q Consensus 104 ----~i~~~P~~~~~~~~~~~~~ 122 (500)
|..|+|+.+|..++|+...
T Consensus 95 ~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 95 QAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp HHHHS---SSEEEEE-TTS-EEE
T ss_pred HHhcCCCCCCceEEECCCCCeee
Confidence 7889999999999887643
No 279
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.78 E-value=5.8e-05 Score=59.42 Aligned_cols=67 Identities=21% Similarity=0.462 Sum_probs=45.2
Q ss_pred cCCCeEEEEEEC-------CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC---CCC---C---CCCCcCcceEEE
Q 010824 391 NSGKNVLLEFYA-------PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN---DIP---G---DTFEVQGYPTVF 454 (500)
Q Consensus 391 ~~~~~~~v~f~~-------~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---~~~---~---~~~~i~~~P~~~ 454 (500)
+++++++|+|++ +|||.|++..|.+.+....... +..++.+.+..- ..+ . ..++++++||++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi 94 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLI 94 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEE
Confidence 356899999986 4999999999999999887654 577777777432 222 1 248899999999
Q ss_pred EEcCC
Q 010824 455 FRSAS 459 (500)
Q Consensus 455 ~~~~~ 459 (500)
-+..+
T Consensus 95 ~~~~~ 99 (119)
T PF06110_consen 95 RWETG 99 (119)
T ss_dssp ECTSS
T ss_pred EECCC
Confidence 99655
No 280
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.76 E-value=0.00054 Score=55.59 Aligned_cols=110 Identities=18% Similarity=0.323 Sum_probs=82.2
Q ss_pred ceEEcCccCh-hhhhccCCeEEEEEECC--CChh-h-hhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcc
Q 010824 32 FVLTLDHSNF-SDTVSKHNFIVVEFYAP--WCGH-C-KKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIR 106 (500)
Q Consensus 32 ~v~~l~~~~~-~~~~~~~~~~lv~f~~~--~c~~-C-~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~ 106 (500)
.+.+|++++. +..=.+++..+|.|... .|.. + ..+...+.++|+.++++. +.|+.+|.+.... +.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~--i~Fv~vd~~~~~~--~~~~fgl~ 78 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKP--WGWLWTEAGAQLD--LEEALNIG 78 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCc--EEEEEEeCcccHH--HHHHcCCC
Confidence 4677777665 33445567777877542 1221 2 456789999999997643 8999999999888 99999985
Q ss_pred --cccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCc
Q 010824 107 --GFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPAS 145 (500)
Q Consensus 107 --~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 145 (500)
++|++++++..+..+..+.|..+.+.+.+|+...+....
T Consensus 79 ~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 79 GFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred ccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 499999999864333337899999999999999886544
No 281
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.75 E-value=8.7e-05 Score=58.80 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=67.7
Q ss_pred hhhcCCCeEEEEEECC----CChhHhhhhH--HHHHHHHHcCCCCceEEEEEeCCCCCC--CCCCCCcCcceEEEEE---
Q 010824 388 MVFNSGKNVLLEFYAP----WCGHCKKLAP--ILDEVAVSYQNDADVVIAKFDATANDI--PGDTFEVQGYPTVFFR--- 456 (500)
Q Consensus 388 ~~~~~~~~~~v~f~~~----~c~~c~~~~~--~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~i~~~P~~~~~--- 456 (500)
..+.+.|.++|++|++ ||..|+.... .+.+. ++. ++.+...|++..+. .+..+++.++|++.++
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~---ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~ 86 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEY---INT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK 86 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHH---HHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEec
Confidence 3356799999999999 8888976643 33333 333 68999999987643 3456889999999999
Q ss_pred cCCCc-eEEecCCCCHHHHHHHHHhhcC
Q 010824 457 SASGK-TVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 457 ~~~~~-~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
+...+ +.+..|..+.++|++.|+...+
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFIMD 114 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 32222 4488999999999999987654
No 282
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.75 E-value=0.00032 Score=55.15 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=73.0
Q ss_pred EcCccChhhhhccCCeEEEEE---ECCCChhhhhhhHHHHHHHHHhc-CCCCCeEEEEEecChhhhHHHHHhcCccc---
Q 010824 35 TLDHSNFSDTVSKHNFIVVEF---YAPWCGHCKKLAPEYEKAASELS-SHDPPVVLAKVDANEEANKELASQYEIRG--- 107 (500)
Q Consensus 35 ~l~~~~~~~~~~~~~~~lv~f---~~~~c~~C~~~~~~~~~~~~~~~-~~~~~v~~~~vd~~~~~~~~~~~~~~i~~--- 107 (500)
.++.+|..... ..+..++++ |+..-..-..+...+.++|+.++ ++ +.|+.+|.+.... ..+.+|+..
T Consensus 3 ~~~~en~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gk---i~Fv~~D~~~~~~--~l~~fgl~~~~~ 76 (111)
T cd03073 3 HRTKDNRAQFT-KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRK---LNFAVADKEDFSH--ELEEFGLDFSGG 76 (111)
T ss_pred eeccchHHHhc-cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCe---EEEEEEcHHHHHH--HHHHcCCCcccC
Confidence 46777777775 333344443 22233445678899999999998 56 9999999988777 889999984
Q ss_pred -ccEEEEEecCCceeeecCCCC-CHHHHHHHHHhh
Q 010824 108 -FPTIKILRNGGKTIQEYKGPR-EADGIVEYLKKQ 140 (500)
Q Consensus 108 -~P~~~~~~~~~~~~~~~~g~~-~~~~l~~~i~~~ 140 (500)
.|.+.+...++ ..+...+.. +.+.|.+|++..
T Consensus 77 ~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 77 EKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 99999988654 323357778 999999999864
No 283
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.72 E-value=7e-05 Score=62.18 Aligned_cols=84 Identities=20% Similarity=0.296 Sum_probs=60.5
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC---------------------CCCCCCCcCcc
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND---------------------IPGDTFEVQGY 450 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---------------------~~~~~~~i~~~ 450 (500)
++.++|+|| +.||+.|....+.+.++...++. .++.++.|..+... ...+.|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 678999999 58999999999999999988864 25677766654321 11234666666
Q ss_pred ---------eEEEEEcCCCceE-EecCCCCHHHHHHH
Q 010824 451 ---------PTVFFRSASGKTV-PYEGDRTKEDIVDF 477 (500)
Q Consensus 451 ---------P~~~~~~~~~~~~-~~~g~~~~~~l~~~ 477 (500)
|+.+++++++++. .+.|....+++.+-
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecCCccchHHHH
Confidence 8999998777744 77787766666543
No 284
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.72 E-value=0.00013 Score=58.98 Aligned_cols=83 Identities=23% Similarity=0.475 Sum_probs=50.4
Q ss_pred cCccChhhhh-ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhc---CcccccEE
Q 010824 36 LDHSNFSDTV-SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQY---EIRGFPTI 111 (500)
Q Consensus 36 l~~~~~~~~~-~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~---~i~~~P~~ 111 (500)
++++..+.+. ...+.-++.|..+|||-|.+..|.+.++++.. +++.+-.+..+.+.+ +..+| |...+|++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~----p~i~~~~i~rd~~~e--l~~~~lt~g~~~IP~~ 101 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN----PNIEVRIILRDENKE--LMDQYLTNGGRSIPTF 101 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-----TTEEEEEE-HHHHHH--HTTTTTT-SS--SSEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC----CCCeEEEEEecCChh--HHHHHHhCCCeecCEE
Confidence 3444344333 24445678888999999999999999999984 347777777666655 66654 68889999
Q ss_pred EEEecCCceeeec
Q 010824 112 KILRNGGKTIQEY 124 (500)
Q Consensus 112 ~~~~~~~~~~~~~ 124 (500)
++++.+|+...++
T Consensus 102 I~~d~~~~~lg~w 114 (129)
T PF14595_consen 102 IFLDKDGKELGRW 114 (129)
T ss_dssp EEE-TT--EEEEE
T ss_pred EEEcCCCCEeEEE
Confidence 9998776765544
No 285
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.71 E-value=0.00035 Score=52.16 Aligned_cols=89 Identities=19% Similarity=0.412 Sum_probs=65.6
Q ss_pred CCCceEEEEEeCCCC-CchHHHHHHHHHHHhhc----Cc----eeEEEE-EcccchhhHH-hhcCCCCCCCceEEEEeCC
Q 010824 266 SPNAKAMLFMNFSSE-GTEPIQSKYREVAEQYK----GQ----GISFLL-GDLEASQGAF-QYFGLQESQVPLIVIQTND 334 (500)
Q Consensus 266 ~~~~~~~l~~~~~~~-~~~~~~~~l~~va~~~~----~~----~~~f~~-~d~~~~~~~~-~~~gi~~~~~P~i~i~~~~ 334 (500)
...|++++|++...+ ..+...+.++.+|.++. .+ ++.|.. ++.. ..+.+ ...++.. ..|.+++++..
T Consensus 13 n~~p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ede-~tdsLRDf~nL~d-~~P~LviLDip 90 (116)
T cd03071 13 NEGPCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGEDD-MTDSLRDYTNLPE-AAPLLTILDMS 90 (116)
T ss_pred cCCceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccch-HHHHHHHhcCCCc-cCceEEEEecc
Confidence 456889999986666 46888888888887652 22 444444 4544 44555 4556664 89999999998
Q ss_pred C-Ccc-CC-CCCChhhHHHHHHHHh
Q 010824 335 G-QKY-LK-PNLDADQIAPWVKEYK 356 (500)
Q Consensus 335 ~-~~y-~~-~~~~~~~i~~fi~~~~ 356 (500)
. .+| ++ .++|.+++.+|+++++
T Consensus 91 ~r~~~v~~~eeIT~e~~~~fv~~yl 115 (116)
T cd03071 91 ARAKYVMDVEEITPAIVEAFVSDFL 115 (116)
T ss_pred ccceEeCchHhcCHHHHHHHHHHhh
Confidence 8 778 55 7899999999999985
No 286
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.70 E-value=0.00025 Score=53.05 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=53.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcC--cccccEEEEEecCCceeeecCC
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYE--IRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~--i~~~P~~~~~~~~~~~~~~~~g 126 (500)
-++.|+.+||++|++....++.+..++.+ +.+..+|...+. ..++.+..+ ...+|++++ +|+.+.
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~----i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi---~g~~ig---- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD----FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV---DQKHIG---- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC----CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE---CCEEEc----
Confidence 36789999999999999999998876532 677777776542 223555554 478999864 334322
Q ss_pred CCCHHHHHHHHHhhc
Q 010824 127 PREADGIVEYLKKQS 141 (500)
Q Consensus 127 ~~~~~~l~~~i~~~~ 141 (500)
..+++.+++...+
T Consensus 71 --g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 --GCTDFEAYVKENL 83 (85)
T ss_pred --CHHHHHHHHHHhc
Confidence 3466777776654
No 287
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.69 E-value=0.00023 Score=64.32 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=66.7
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC---------CCCCCCcCcceEEEEEcCC-Cce
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI---------PGDTFEVQGYPTVFFRSAS-GKT 462 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------~~~~~~i~~~P~~~~~~~~-~~~ 462 (500)
++.-+++||.+.|++|+++.|.+..++++++= .+..+.+|-.-.+. ..+++++..+|+++++..+ ++.
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 55889999999999999999999999999863 34444444332222 2346889999999999777 444
Q ss_pred EE-ecCCCCHHHHHHHHHhhcCC
Q 010824 463 VP-YEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 463 ~~-~~g~~~~~~l~~~i~~~~~~ 484 (500)
.. -.|.++.++|.+=|-..+..
T Consensus 228 ~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 228 SPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 43 44889999998877665543
No 288
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.68 E-value=0.00012 Score=59.26 Aligned_cols=71 Identities=27% Similarity=0.586 Sum_probs=55.6
Q ss_pred CCCeEEEEEECC-CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC---------------------CCCCCCcC-
Q 010824 392 SGKNVLLEFYAP-WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI---------------------PGDTFEVQ- 448 (500)
Q Consensus 392 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------------------~~~~~~i~- 448 (500)
.+++++|.||+. ||+.|+...+.+.++...++.. ++.++.|..+..+. ..+.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~-~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDK-GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT-TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccc-eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 368999999999 9999999999999999988743 68888887755321 12346666
Q ss_pred -----cceEEEEEcCCCceE
Q 010824 449 -----GYPTVFFRSASGKTV 463 (500)
Q Consensus 449 -----~~P~~~~~~~~~~~~ 463 (500)
.+|+++++++++++.
T Consensus 103 ~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TTTSEESEEEEEEETTSBEE
T ss_pred ccCCceEeEEEEECCCCEEE
Confidence 899999998887744
No 289
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.67 E-value=8.8e-05 Score=62.00 Aligned_cols=83 Identities=28% Similarity=0.455 Sum_probs=73.2
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
++.+|-....+...+++.||.+.-..|+-+-..++.+|...-+ ..|..||....|- ++.+++|...|++.+|.+
T Consensus 73 ~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PF--lv~kL~IkVLP~v~l~k~ 146 (211)
T KOG1672|consen 73 SEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPF--LVTKLNIKVLPTVALFKN 146 (211)
T ss_pred cHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCce--eeeeeeeeEeeeEEEEEc
Confidence 4678888888888899999999999999999999999998654 8899999999999 999999999999999998
Q ss_pred CCceeeecCC
Q 010824 117 GGKTIQEYKG 126 (500)
Q Consensus 117 ~~~~~~~~~g 126 (500)
| .....+-|
T Consensus 147 g-~~~D~iVG 155 (211)
T KOG1672|consen 147 G-KTVDYVVG 155 (211)
T ss_pred C-EEEEEEee
Confidence 7 55555555
No 290
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.67 E-value=0.00028 Score=63.34 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC---------CCCCCcCcceEEEEEcCCC-ce
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP---------GDTFEVQGYPTVFFRSASG-KT 462 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---------~~~~~i~~~P~~~~~~~~~-~~ 462 (500)
++.-+++||.+.|++|+++.|.++.++++++= .+..+.+|-.-.+.+ .+++++..+|+++++..+. +.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 55889999999999999999999999999864 455556554333221 2358899999999997664 44
Q ss_pred E-EecCCCCHHHHHHHHHhhcCC
Q 010824 463 V-PYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 463 ~-~~~g~~~~~~l~~~i~~~~~~ 484 (500)
. .-.|.++.++|.+=|...+..
T Consensus 221 ~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 221 RPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred EEEeeccCCHHHHHHHHHHHHhc
Confidence 4 344889999998877766544
No 291
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.66 E-value=0.00037 Score=61.71 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=65.2
Q ss_pred Ce-EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-------------------------hhHHHHHh
Q 010824 49 NF-IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-------------------------ANKELASQ 102 (500)
Q Consensus 49 ~~-~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~~~ 102 (500)
++ +|+.|++.||+.|....+.+.++++++++.+ +.+..|+++.. +...+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 44 4557889999999999999999999998655 56666665531 12357888
Q ss_pred cCcc----c----ccEEEEEecCCceeeecCC----CCCHHHHHHHHHhh
Q 010824 103 YEIR----G----FPTIKILRNGGKTIQEYKG----PREADGIVEYLKKQ 140 (500)
Q Consensus 103 ~~i~----~----~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~ 140 (500)
||+. + .|+.++++++|+....+.+ .++.+++.+.+...
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8875 2 3568999888777655544 35678888888654
No 292
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.66 E-value=0.00099 Score=51.68 Aligned_cols=106 Identities=15% Similarity=0.315 Sum_probs=76.1
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHH-HHcCCCCceEEEEEeCCCC-----CCCCCCCCc--
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVA-VSYQNDADVVIAKFDATAN-----DIPGDTFEV-- 447 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~-~~~~~~~~~~~~~id~~~~-----~~~~~~~~i-- 447 (500)
....|+.-+|++.+ ...+.++|-|=..+ +.=+-+..|.+++ .......++.++.|-+... ..+.++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 35679999999999 66799999995544 3344567788888 4444555899999998764 334567888
Q ss_pred CcceEEEEEcCCCc-eEEe--cCCCCHHHHHHHHHhhcCC
Q 010824 448 QGYPTVFFRSASGK-TVPY--EGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 448 ~~~P~~~~~~~~~~-~~~~--~g~~~~~~l~~~i~~~~~~ 484 (500)
..+|.+++|..+.. +++| .|..+.+.|.+|++++.+-
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 57899999985544 8888 7899999999999998653
No 293
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.58 E-value=0.00012 Score=59.22 Aligned_cols=84 Identities=19% Similarity=0.370 Sum_probs=46.8
Q ss_pred EeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC---CCcCcceEEEEE
Q 010824 380 LVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT---FEVQGYPTVFFR 456 (500)
Q Consensus 380 l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~i~~~P~~~~~ 456 (500)
++.+....+....++..++.|..+||+.|+...|.+.+++..-. ++.+-.+--+.+....++ .+..++|+++++
T Consensus 28 l~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p---~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~ 104 (129)
T PF14595_consen 28 LSEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP---NIEVRIILRDENKELMDQYLTNGGRSIPTFIFL 104 (129)
T ss_dssp --HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T---TEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC---CCeEEEEEecCChhHHHHHHhCCCeecCEEEEE
Confidence 44444444443456678889999999999999999999998753 344444444444333322 467899999999
Q ss_pred cCCCceE-Eec
Q 010824 457 SASGKTV-PYE 466 (500)
Q Consensus 457 ~~~~~~~-~~~ 466 (500)
+.+++.. ++.
T Consensus 105 d~~~~~lg~wg 115 (129)
T PF14595_consen 105 DKDGKELGRWG 115 (129)
T ss_dssp -TT--EEEEEE
T ss_pred cCCCCEeEEEc
Confidence 7766644 444
No 294
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.56 E-value=0.00018 Score=53.65 Aligned_cols=57 Identities=26% Similarity=0.377 Sum_probs=41.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh---HHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN---KELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i~~~P~~~~ 113 (500)
++.|+++||++|+.+.+.+.+.. .. +.+.+..+|...+.. ..+.+.+++..+|++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~---~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK---PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI 60 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC---CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE
Confidence 47899999999999999988765 22 226677777653321 23666789999999854
No 295
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.55 E-value=0.00047 Score=54.30 Aligned_cols=69 Identities=22% Similarity=0.475 Sum_probs=46.4
Q ss_pred ccCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----hHHHHH--hcCcccccEE
Q 010824 46 SKHNFIVVEFYAP-------WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----NKELAS--QYEIRGFPTI 111 (500)
Q Consensus 46 ~~~~~~lv~f~~~-------~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~--~~~i~~~P~~ 111 (500)
+++++++|+|+++ |||.|....|.+.++.....+. ..++.|.....+ .-.+.. +++++++||+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTL 93 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTL 93 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE---HHHHC-TTSHHHH--CC---SSSEE
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcCCHHHhCCCCCCceEcceeeeeecceE
Confidence 4667899999955 9999999999999998885443 777777654321 112444 5899999999
Q ss_pred EEEecC
Q 010824 112 KILRNG 117 (500)
Q Consensus 112 ~~~~~~ 117 (500)
+-+..+
T Consensus 94 i~~~~~ 99 (119)
T PF06110_consen 94 IRWETG 99 (119)
T ss_dssp EECTSS
T ss_pred EEECCC
Confidence 999866
No 296
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.55 E-value=0.00084 Score=61.12 Aligned_cols=92 Identities=12% Similarity=0.214 Sum_probs=67.9
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh--------------------------hhHHH
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE--------------------------ANKEL 99 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--------------------------~~~~~ 99 (500)
+++++++.|| +.||+.|....+.+.+.++++.+.+ +.+..|.++.. +...+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 5667888888 8999999999999999999998665 44455544431 12358
Q ss_pred HHhcCcc-----cccEEEEEecCCceeeec----CCCCCHHHHHHHHHhh
Q 010824 100 ASQYEIR-----GFPTIKILRNGGKTIQEY----KGPREADGIVEYLKKQ 140 (500)
Q Consensus 100 ~~~~~i~-----~~P~~~~~~~~~~~~~~~----~g~~~~~~l~~~i~~~ 140 (500)
++.||+. ..|+.++++++|...+.+ ...++.+++++.|...
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 8889985 479999999877776544 2346888888887653
No 297
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.53 E-value=0.00053 Score=50.72 Aligned_cols=95 Identities=16% Similarity=0.248 Sum_probs=75.3
Q ss_pred cchhhhhcCCCceEEEEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccc--hhhHHhhcCCCCCCCce-EEEEeCC
Q 010824 258 PFVIKFFNSPNAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEA--SQGAFQYFGLQESQVPL-IVIQTND 334 (500)
Q Consensus 258 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~--~~~~~~~~gi~~~~~P~-i~i~~~~ 334 (500)
..+..+++....+.++|+. +..+....+..+.++|...+|. =+.+|+||.. ...+|+.+.+++...|. +.+.+.+
T Consensus 10 KdfKKLLRTr~NVLvLy~k-s~k~a~~~Lk~~~~~A~~vkG~-gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYK 87 (112)
T cd03067 10 KDFKKLLRTRNNVLVLYSK-SAKSAEALLKLLSDVAQAVKGQ-GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYK 87 (112)
T ss_pred HHHHHHHhhcCcEEEEEec-chhhHHHHHHHHHHHHHHhcCc-eeEEEEecCChHHHHHHHHHccCCCCCCCcchhhccc
Confidence 4567788888888888877 6666688899999999999999 8999999985 88999999999656664 3444444
Q ss_pred CCcc---CCCCCChhhHHHHHHH
Q 010824 335 GQKY---LKPNLDADQIAPWVKE 354 (500)
Q Consensus 335 ~~~y---~~~~~~~~~i~~fi~~ 354 (500)
..-| |+...+..+|..|+.+
T Consensus 88 dG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 88 DGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred CCCccccccchhhHHHHHHHhhC
Confidence 4333 7788999999999865
No 298
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.00033 Score=53.60 Aligned_cols=74 Identities=20% Similarity=0.391 Sum_probs=55.6
Q ss_pred Chhhhh---ccCCeEEEEEECC--------CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-----hHHHHHhc
Q 010824 40 NFSDTV---SKHNFIVVEFYAP--------WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-----NKELASQY 103 (500)
Q Consensus 40 ~~~~~~---~~~~~~lv~f~~~--------~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~~~~~~ 103 (500)
.|+..+ .+++.++|+|+++ |||.|.++.|.+.++.+...+ ++.|+.|+..+-+ .-.+....
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~FR~d~ 90 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANPFRKDP 90 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCccccCC
Confidence 455554 3566699999964 999999999999999885544 4999999876622 11266677
Q ss_pred Cc-ccccEEEEEec
Q 010824 104 EI-RGFPTIKILRN 116 (500)
Q Consensus 104 ~i-~~~P~~~~~~~ 116 (500)
++ .++||++=|..
T Consensus 91 ~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 91 GILTAVPTLLRWKR 104 (128)
T ss_pred CceeecceeeEEcC
Confidence 77 99999998884
No 299
>PRK13189 peroxiredoxin; Provisional
Probab=97.51 E-value=0.0011 Score=59.37 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=65.5
Q ss_pred cCCeEE-EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh-------------------------hhHHHH
Q 010824 47 KHNFIV-VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE-------------------------ANKELA 100 (500)
Q Consensus 47 ~~~~~l-v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-------------------------~~~~~~ 100 (500)
++++++ +.|++.||+.|....+.+.+.+++++..+ +.+..|+++.. ....++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 566554 46679999999999999999999997655 55555554431 123477
Q ss_pred HhcCcc-------cccEEEEEecCCceeeecC----CCCCHHHHHHHHHhh
Q 010824 101 SQYEIR-------GFPTIKILRNGGKTIQEYK----GPREADGIVEYLKKQ 140 (500)
Q Consensus 101 ~~~~i~-------~~P~~~~~~~~~~~~~~~~----g~~~~~~l~~~i~~~ 140 (500)
++||+. ..|+.++++++|...+... ..++.+++++.|...
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 888864 4689999998877654433 346788888888754
No 300
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.50 E-value=0.00061 Score=61.49 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=59.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEe----------------cCh-----------------
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD----------------ANE----------------- 93 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd----------------~~~----------------- 93 (500)
+++..++.|..+.||+|+++.+.+.++.+. +-.+.+.... |..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 456789999999999999999888776431 1112221111 111
Q ss_pred -------hhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 94 -------EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 94 -------~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
....++++++||+++|+++ +.+| . ...|....+.|.++|.+.
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-~---~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNG-T---LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCC-e---EeeCCCCHHHHHHHHHHc
Confidence 1123588899999999998 5544 3 458999999999998764
No 301
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.48 E-value=0.00034 Score=52.31 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=54.0
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC----CCCCCC--CcCcceEEEEEcCCCceEEecCCC
Q 010824 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND----IPGDTF--EVQGYPTVFFRSASGKTVPYEGDR 469 (500)
Q Consensus 396 ~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~--~i~~~P~~~~~~~~~~~~~~~g~~ 469 (500)
-++.|+.+||++|+.....|+++..... ++.+..+|++.+. .+.+.. +..++|+++ . +| +.+ .
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~---~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if-i-~g-~~i-----g 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD---DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF-V-DQ-KHI-----G 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc---CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE-E-CC-EEE-----c
Confidence 3678999999999999999999986543 5788888888653 222212 347899985 3 33 322 2
Q ss_pred CHHHHHHHHHhhcC
Q 010824 470 TKEDIVDFIENNRD 483 (500)
Q Consensus 470 ~~~~l~~~i~~~~~ 483 (500)
..++|.++++++++
T Consensus 71 g~~~~~~~~~~~~~ 84 (85)
T PRK11200 71 GCTDFEAYVKENLG 84 (85)
T ss_pred CHHHHHHHHHHhcc
Confidence 46788888887654
No 302
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.44 E-value=0.00058 Score=59.63 Aligned_cols=87 Identities=16% Similarity=0.158 Sum_probs=60.0
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-------------------------CCCCCCCC
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-------------------------DIPGDTFE 446 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~ 446 (500)
++.++|+|| +.||+.|....+.|.++...++.. ++.++.|.++.. ....+.|+
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~-gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKL-GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 678999999 999999999999999999888532 455555544321 01122455
Q ss_pred cC------cceEEEEEcCCCceE-Eec----CCCCHHHHHHHHHh
Q 010824 447 VQ------GYPTVFFRSASGKTV-PYE----GDRTKEDIVDFIEN 480 (500)
Q Consensus 447 i~------~~P~~~~~~~~~~~~-~~~----g~~~~~~l~~~i~~ 480 (500)
+. ..|+.+++++++++. .+. ...+.+++.+.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 54 469999998777744 221 23588889888854
No 303
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.43 E-value=0.0011 Score=59.07 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=66.6
Q ss_pred cCCeEEE-EEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------------hHHHH
Q 010824 47 KHNFIVV-EFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------------NKELA 100 (500)
Q Consensus 47 ~~~~~lv-~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~ 100 (500)
+++++++ .|++.||+.|....+.+.+.+.++++.+ +.+..|+++... ...++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 4665554 6679999999999999999999997655 556666555322 22477
Q ss_pred HhcCcc-------cccEEEEEecCCceeeecC----CCCCHHHHHHHHHhh
Q 010824 101 SQYEIR-------GFPTIKILRNGGKTIQEYK----GPREADGIVEYLKKQ 140 (500)
Q Consensus 101 ~~~~i~-------~~P~~~~~~~~~~~~~~~~----g~~~~~~l~~~i~~~ 140 (500)
++||+- ..|+.++++++|.....+. -.++.+++++.+...
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778863 3699999998877665432 236889999888764
No 304
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.42 E-value=0.00015 Score=54.17 Aligned_cols=54 Identities=20% Similarity=0.407 Sum_probs=39.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-----CCCCCCcCcceEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-----PGDTFEVQGYPTVF 454 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~~~i~~~P~~~ 454 (500)
++.|+++||++|+.+.+.+.++. ... .+.++.+|.+.+.. ..+..++.++|+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~ 59 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF 59 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 47899999999999999999876 222 36777777765432 33445778999983
No 305
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.41 E-value=0.00078 Score=58.13 Aligned_cols=89 Identities=12% Similarity=0.154 Sum_probs=62.2
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC----------------CC------------CC
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND----------------IP------------GD 443 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----------------~~------------~~ 443 (500)
++.++|+|| +.||+.|....+.|.++.+.+.+. ++.++.|..+... .. .+
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 578999999 899999999999999999998642 4555555543210 01 12
Q ss_pred CCCcC------cceEEEEEcCCCceE-Eec----CCCCHHHHHHHHHhhc
Q 010824 444 TFEVQ------GYPTVFFRSASGKTV-PYE----GDRTKEDIVDFIENNR 482 (500)
Q Consensus 444 ~~~i~------~~P~~~~~~~~~~~~-~~~----g~~~~~~l~~~i~~~~ 482 (500)
.|++. ..|+.+++++++++. ++. ...+.+++.+.|+...
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~ 157 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQ 157 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 35554 578999998887744 442 2356788999997653
No 306
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.35 E-value=0.00053 Score=57.54 Aligned_cols=45 Identities=13% Similarity=0.253 Sum_probs=34.7
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN 438 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~ 438 (500)
+..++++|++.||+.|+...+.+.++...++. .++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCH
Confidence 33445555699999999999999999999864 2688888887654
No 307
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.34 E-value=0.0016 Score=58.02 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=66.8
Q ss_pred cCCeE-EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------------hHHHH
Q 010824 47 KHNFI-VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA-------------------------NKELA 100 (500)
Q Consensus 47 ~~~~~-lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~~~~~ 100 (500)
.++++ |+.|++.||+.|....+.+.+++.++...+ +.+..|+++... ...++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 45554 567889999999999999999999997655 556666655421 22477
Q ss_pred HhcCcc-------cccEEEEEecCCceeeec--C--CCCCHHHHHHHHHhh
Q 010824 101 SQYEIR-------GFPTIKILRNGGKTIQEY--K--GPREADGIVEYLKKQ 140 (500)
Q Consensus 101 ~~~~i~-------~~P~~~~~~~~~~~~~~~--~--g~~~~~~l~~~i~~~ 140 (500)
+.||+. ..|++++++++|+....+ . ..+..+++++.+...
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 788863 579999999887765443 2 236788888888753
No 308
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.29 E-value=0.0011 Score=56.02 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=56.8
Q ss_pred CCCeEEEEEECC-CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC---------------------CCCCCCcCc
Q 010824 392 SGKNVLLEFYAP-WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI---------------------PGDTFEVQG 449 (500)
Q Consensus 392 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------------------~~~~~~i~~ 449 (500)
.++.++|+||+. ||+.|....+.+.++.+.+++. ++.++.|..+.... +.+.|++..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~ 107 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWG 107 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCc
Confidence 467899999975 7889999999999998888642 57777776643211 122344433
Q ss_pred c------------eEEEEEcCCCceE-EecCCCCH---HHHHHHHH
Q 010824 450 Y------------PTVFFRSASGKTV-PYEGDRTK---EDIVDFIE 479 (500)
Q Consensus 450 ~------------P~~~~~~~~~~~~-~~~g~~~~---~~l~~~i~ 479 (500)
. |+.+++++++++. .+.|.... ++++++++
T Consensus 108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDVVLDYLK 153 (154)
T ss_pred ccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHHHHHHHh
Confidence 2 6778887777744 66665433 44555543
No 309
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.27 E-value=0.0022 Score=56.67 Aligned_cols=92 Identities=15% Similarity=0.274 Sum_probs=66.5
Q ss_pred cCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--------------------------hHHH
Q 010824 47 KHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--------------------------NKEL 99 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------------~~~~ 99 (500)
.++++++.|| +.||++|....+.+.+.++++...+ +.+..|+++... ..++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 5778899999 4789999999999999999998765 556666555321 2357
Q ss_pred HHhcCcc------cccEEEEEecCCceeeecCC----CCCHHHHHHHHHhh
Q 010824 100 ASQYEIR------GFPTIKILRNGGKTIQEYKG----PREADGIVEYLKKQ 140 (500)
Q Consensus 100 ~~~~~i~------~~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~ 140 (500)
++.||+. .+|+.++++++|+....+.+ .++.+++++.|...
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 7888875 47999999988776554433 35666777766643
No 310
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.23 E-value=0.0014 Score=57.87 Aligned_cols=81 Identities=28% Similarity=0.372 Sum_probs=53.6
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh---------------------------------
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE--------------------------------- 93 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--------------------------------- 93 (500)
+++..++.|+.+.|++|+++.+.+.. ..+ +-.+.+..+....
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NAD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 46789999999999999999987765 111 1112222111111
Q ss_pred --------hhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHH
Q 010824 94 --------EANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYL 137 (500)
Q Consensus 94 --------~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 137 (500)
.....+++++||+++|+++ +.+| . .+.|..+.+.|.+++
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G-~---~~~G~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADG-R---VVPGAPPAAQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCC-e---EecCCCCHHHHHhhC
Confidence 1122488899999999997 6655 3 467888888887764
No 311
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.19 E-value=0.0021 Score=55.03 Aligned_cols=84 Identities=18% Similarity=0.274 Sum_probs=58.0
Q ss_pred CCeEEEEEECCC-ChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-------------------C----CCCCCCCcC
Q 010824 393 GKNVLLEFYAPW-CGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-------------------D----IPGDTFEVQ 448 (500)
Q Consensus 393 ~~~~~v~f~~~~-c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------~----~~~~~~~i~ 448 (500)
++.++|.||+.| |++|....+.|.++...++ ++.++.+..+.. + ...+.|++.
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGVA 120 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCCe
Confidence 678999999999 9999999999999988874 466665655431 0 112346666
Q ss_pred cce---------EEEEEcCCCceE-Eec-----CCCCHHHHHHHHH
Q 010824 449 GYP---------TVFFRSASGKTV-PYE-----GDRTKEDIVDFIE 479 (500)
Q Consensus 449 ~~P---------~~~~~~~~~~~~-~~~-----g~~~~~~l~~~i~ 479 (500)
..| +.+++++++++. .+. .....+.++++|+
T Consensus 121 ~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~ 166 (167)
T PRK00522 121 IAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK 166 (167)
T ss_pred ecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence 666 888898777744 331 2345777777764
No 312
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.17 E-value=0.00051 Score=49.46 Aligned_cols=68 Identities=16% Similarity=0.301 Sum_probs=45.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCC----CcCcceEEEEEcCCCceEEecCCCCHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF----EVQGYPTVFFRSASGKTVPYEGDRTKE 472 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~i~~~P~~~~~~~~~~~~~~~g~~~~~ 472 (500)
++.|+++||++|+.+...+.+. ++.+..+|++.+....+.+ ...++|++++. | ..+.| .+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~--------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~--~---~~i~g-~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER--------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIG--D---EHLSG-FRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC--------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEEC--C---EEEec-CCHH
Confidence 5789999999999988877662 4666677877654332222 56899999752 3 23344 5666
Q ss_pred HHHHHH
Q 010824 473 DIVDFI 478 (500)
Q Consensus 473 ~l~~~i 478 (500)
.|.++|
T Consensus 68 ~l~~~~ 73 (73)
T cd02976 68 KLRALL 73 (73)
T ss_pred HHHhhC
Confidence 776653
No 313
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.13 E-value=0.0075 Score=53.64 Aligned_cols=40 Identities=23% Similarity=0.519 Sum_probs=29.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEe
Q 010824 48 HNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVD 90 (500)
Q Consensus 48 ~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd 90 (500)
+++.+|.|++..||||.++.+.+ ..+.+.+.+. +.+..+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~---v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEG---TKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCC---CeEEEec
Confidence 46779999999999999999866 6677776543 4444433
No 314
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.12 E-value=0.0064 Score=46.79 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=62.7
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEE
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIK 112 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~ 112 (500)
...++..+++..+..+...+++|. ..|..+.+....-.-+.+-.+.-+..+..+.+.-..+.. +..+||+..+|+++
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~-gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~--L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFA-GDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERA--LAARFGVRRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEES-S-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHH--HHHHHT-TSSSEEE
T ss_pred CeeechhhHHHHHhCCCcEEEEEC-CCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHH--HHHHhCCccCCeEE
Confidence 456788899999988777665554 445555444432223333333223447778888555555 99999999999999
Q ss_pred EEecCCceeeecCCCCCHHH
Q 010824 113 ILRNGGKTIQEYKGPREADG 132 (500)
Q Consensus 113 ~~~~~~~~~~~~~g~~~~~~ 132 (500)
|+++| +......|.++-++
T Consensus 88 f~R~g-~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 88 FFRDG-RYLGAIEGIRDWAD 106 (107)
T ss_dssp EEETT-EEEEEEESSSTHHH
T ss_pred EEECC-EEEEEecCeecccc
Confidence 99986 77777777766543
No 315
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.0045 Score=47.87 Aligned_cols=73 Identities=22% Similarity=0.438 Sum_probs=62.9
Q ss_pred Chhhhh--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecC
Q 010824 40 NFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 40 ~~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
..++++ ...+.++|-|-..|.+.|.++-..+.++++.+..- ..++-+|.+.-+. +.+.|++...|+++||-++
T Consensus 13 ~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~--~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 13 EVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPD--FVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhh--hhhhhcccCCceEEEEEcC
Confidence 344444 35678899999999999999999999999999876 7888889888777 9999999999999999876
No 316
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.09 E-value=0.0044 Score=52.17 Aligned_cols=31 Identities=48% Similarity=0.772 Sum_probs=27.2
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASEL 77 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~ 77 (500)
+.++.++.|+.++||+|..+.+.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4578899999999999999999999887665
No 317
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.09 E-value=0.0012 Score=49.43 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=50.4
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC----CCCCCCC--cCcceEEEEEcCCCceEEecCCCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND----IPGDTFE--VQGYPTVFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~~--i~~~P~~~~~~~~~~~~~~~g~~~ 470 (500)
+++|+.+||++|..+...|.++..... ++.+..+|++.+. .+.+..+ ..++|.++ + .| +. . ..
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if-i-~g-~~--i---gG 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF-V-DE-KH--V---GG 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE-E-CC-EE--e---cC
Confidence 678999999999999999988764432 3667777877532 1222233 37899994 4 23 22 2 34
Q ss_pred HHHHHHHHHhhcC
Q 010824 471 KEDIVDFIENNRD 483 (500)
Q Consensus 471 ~~~l~~~i~~~~~ 483 (500)
.++|.++++++.+
T Consensus 71 ~~dl~~~~~~~~~ 83 (86)
T TIGR02183 71 CTDFEQLVKENFD 83 (86)
T ss_pred HHHHHHHHHhccc
Confidence 5788888887654
No 318
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.08 E-value=0.003 Score=45.33 Aligned_cols=69 Identities=22% Similarity=0.392 Sum_probs=43.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcccccEEEEEecCCceeeecCCCCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIRGFPTIKILRNGGKTIQEYKGPRE 129 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~ 129 (500)
++.|+++||++|.++...+.+. + +.+..+|.+.+.. .++.+..+..++|++.+ +| . ...| .+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-------~--i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~-~---~i~g-~~ 65 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-------G--IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD-E---HLSG-FR 65 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-------C--CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC-E---EEec-CC
Confidence 5788999999999987766641 2 4556666654332 23444457889999976 22 2 3333 44
Q ss_pred HHHHHHH
Q 010824 130 ADGIVEY 136 (500)
Q Consensus 130 ~~~l~~~ 136 (500)
...|.++
T Consensus 66 ~~~l~~~ 72 (73)
T cd02976 66 PDKLRAL 72 (73)
T ss_pred HHHHHhh
Confidence 5555554
No 319
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.07 E-value=0.0022 Score=65.83 Aligned_cols=97 Identities=16% Similarity=0.273 Sum_probs=75.2
Q ss_pred cCccChhhhhc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 36 LDHSNFSDTVS-KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 36 l~~~~~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
|+++..+.+.. .++.-+-.|+++.|++|......+..++.. +++|.+-.+|....++ ++.+|+|.++|++++
T Consensus 103 l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~~--~~~~~~v~~VP~~~i- 175 (517)
T PRK15317 103 LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQD--EVEARNIMAVPTVFL- 175 (517)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCHh--HHHhcCCcccCEEEE-
Confidence 45544444443 234458889999999998888888877765 5569999999999888 999999999999976
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 115 RNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
++ + ..+.|..+.+.+.+.+.+..++
T Consensus 176 -~~-~--~~~~g~~~~~~~~~~~~~~~~~ 200 (517)
T PRK15317 176 -NG-E--EFGQGRMTLEEILAKLDTGAAA 200 (517)
T ss_pred -CC-c--EEEecCCCHHHHHHHHhccccc
Confidence 23 3 3688999999999998876553
No 320
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.06 E-value=0.0031 Score=54.75 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-------------------------CCCCCCCC
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-------------------------DIPGDTFE 446 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-------------------------~~~~~~~~ 446 (500)
++.++++|| +.||+.|....+.|.+...+++.. ++.++.|..+.. ..+++.|+
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC
Confidence 568899999 999999999999999999998542 455665554431 11123455
Q ss_pred c----Ccc--eEEEEEcCCCceE-Ee----cCCCCHHHHHHHHHhh
Q 010824 447 V----QGY--PTVFFRSASGKTV-PY----EGDRTKEDIVDFIENN 481 (500)
Q Consensus 447 i----~~~--P~~~~~~~~~~~~-~~----~g~~~~~~l~~~i~~~ 481 (500)
+ .++ |+.+++++++++. .+ ...++.+++.+.|+..
T Consensus 110 v~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 NMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred CCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5 245 9999998888744 22 1347899999999654
No 321
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.05 E-value=0.0068 Score=51.56 Aligned_cols=86 Identities=29% Similarity=0.413 Sum_probs=61.9
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh-------------------------------
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA------------------------------- 95 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------------- 95 (500)
..+.+|+.|+...|++|..+.+.+.++.+++-+ .+++.+...+.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~-~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYID-PGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccC-CCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 456889999999999999999999999999832 223777777642111
Q ss_pred -----------------------------------hHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHh
Q 010824 96 -----------------------------------NKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKK 139 (500)
Q Consensus 96 -----------------------------------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 139 (500)
....++++||.++|++++ +|+. +.|..+.++|.+.|++
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i---nG~~---~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI---NGKY---VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE---TTCE---EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE---CCEE---eCCCCCHHHHHHHHcC
Confidence 002444568999999988 4453 5888999999998864
No 322
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.04 E-value=0.0011 Score=55.30 Aligned_cols=105 Identities=19% Similarity=0.316 Sum_probs=60.0
Q ss_pred CCeEEEecc-chhhhhhcCCCeEEEEEECCCChhHhhhhH-HHH--HHHHHcCCCCceEEEEEeCCCCCCCCCCC-----
Q 010824 375 EPVKVLVAD-SLQDMVFNSGKNVLLEFYAPWCGHCKKLAP-ILD--EVAVSYQNDADVVIAKFDATANDIPGDTF----- 445 (500)
Q Consensus 375 ~~~~~l~~~-~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~-~~~--~~~~~~~~~~~~~~~~id~~~~~~~~~~~----- 445 (500)
.+|...... ..-+.....+|++||.++.+||..|+.|.. .|. +++..++. ++.-+++|.++.+++...|
T Consensus 18 ~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~ 95 (163)
T PF03190_consen 18 NPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQ 95 (163)
T ss_dssp SSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHH
T ss_pred CCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHH
Confidence 334444332 333333477999999999999999998876 333 35666654 6899999999988887666
Q ss_pred ---CcCcceEEEEEcCCCceE---Eec------CCCCHHHHHHHHHhh
Q 010824 446 ---EVQGYPTVFFRSASGKTV---PYE------GDRTKEDIVDFIENN 481 (500)
Q Consensus 446 ---~i~~~P~~~~~~~~~~~~---~~~------g~~~~~~l~~~i~~~ 481 (500)
+.-+.|+.++..+.++++ .|. |.....+++.-|.+.
T Consensus 96 ~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~ 143 (163)
T PF03190_consen 96 AMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAEL 143 (163)
T ss_dssp HHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHH
T ss_pred HhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHH
Confidence 567999999998777755 233 223555555555544
No 323
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.03 E-value=0.0011 Score=45.61 Aligned_cols=53 Identities=28% Similarity=0.471 Sum_probs=39.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++.|..++|++|+.....+.+ . + +.+-.+|.+.++ .+++.+..|...+|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~----~---~--i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDE----K---G--IPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHH----T---T--BEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHH----c---C--CeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 578999999999999877732 2 3 677777777753 334555569999999987
No 324
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.02 E-value=0.0041 Score=47.56 Aligned_cols=94 Identities=13% Similarity=0.216 Sum_probs=62.7
Q ss_pred CccChhhhhcc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCccc-ccEE
Q 010824 37 DHSNFSDTVSK--HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRG-FPTI 111 (500)
Q Consensus 37 ~~~~~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~-~P~~ 111 (500)
+.++++.++.+ .++++|+=.++.|+-+......|++......+. +.++.+|.-... .-.+++++||.. -|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~---~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE---IPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc---ceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 44678888866 888888888999999999999999998887653 777777766644 334889999864 6999
Q ss_pred EEEecCCceeeecCCCCCHHHH
Q 010824 112 KILRNGGKTIQEYKGPREADGI 133 (500)
Q Consensus 112 ~~~~~~~~~~~~~~g~~~~~~l 133 (500)
+++++|.-.+..=.+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 9999873333334445555554
No 325
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.01 E-value=0.0017 Score=48.57 Aligned_cols=77 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCc--ccccEEEEEecCCceeeecCCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEI--RGFPTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i--~~~P~~~~~~~~~~~~~~~~g~ 127 (500)
++.|+.+||++|.+....+.++..+.. .+.+..+|...+. ..++.+..+- ..+|++++ +|+. -
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi---~g~~----i-- 68 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV---DEKH----V-- 68 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE---CCEE----e--
Confidence 578899999999999988887654422 2667777776433 2336666663 78999954 2233 1
Q ss_pred CCHHHHHHHHHhhc
Q 010824 128 READGIVEYLKKQS 141 (500)
Q Consensus 128 ~~~~~l~~~i~~~~ 141 (500)
--.++|.+++.+..
T Consensus 69 gG~~dl~~~~~~~~ 82 (86)
T TIGR02183 69 GGCTDFEQLVKENF 82 (86)
T ss_pred cCHHHHHHHHHhcc
Confidence 23467777776644
No 326
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.96 E-value=0.0054 Score=55.40 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=56.0
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCC---------------------------------
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATA--------------------------------- 437 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~--------------------------------- 437 (500)
.+.+.+++.|+++.||+|+.+.+.+.++.+. ++.+..+..-.
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~-----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNAL-----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcC-----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 3467889999999999999999988876431 23332221110
Q ss_pred -----------CCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHhh
Q 010824 438 -----------NDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENN 481 (500)
Q Consensus 438 -----------~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 481 (500)
+...+++++++++|+++ +.+| . .+.|..+.++|.++|++.
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G-~--~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPAIV-LSNG-T--LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccEEE-EcCC-e--EeeCCCCHHHHHHHHHHc
Confidence 01112367899999998 5444 2 348889999999999864
No 327
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.96 E-value=0.0032 Score=52.77 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=34.1
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~ 436 (500)
++.++|.|| +.||+.|....|.+.++...++. .++.++.|..+
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d 71 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVD 71 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCC
Confidence 377777777 89999999999999999998864 25777766654
No 328
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.93 E-value=0.00081 Score=49.62 Aligned_cols=78 Identities=17% Similarity=0.266 Sum_probs=58.8
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCC--ceEEecCCCCHHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASG--KTVPYEGDRTKEDI 474 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~--~~~~~~g~~~~~~l 474 (500)
+++|+.+.|+.|..+...+..+... ..+.+-.+|++.++...++|+. .+|.+.+-+.++ ......+..+.+.|
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~----~~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~L 76 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE----FPFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQL 76 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT----STCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh----cCceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHHHH
Confidence 6789999999999998888876443 2588999999988887778884 899976653211 14566788999999
Q ss_pred HHHHH
Q 010824 475 VDFIE 479 (500)
Q Consensus 475 ~~~i~ 479 (500)
.+||+
T Consensus 77 ~~~L~ 81 (81)
T PF05768_consen 77 RAWLE 81 (81)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 329
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.91 E-value=0.0029 Score=52.59 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=35.0
Q ss_pred CCeEEEEEECCC-ChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC
Q 010824 393 GKNVLLEFYAPW-CGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436 (500)
Q Consensus 393 ~~~~~v~f~~~~-c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~ 436 (500)
++.++|+||+.| |++|+...+.+.++.+.++ ++.++.|+.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 678999999998 7999999999999998874 4777777765
No 330
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.90 E-value=0.0022 Score=47.48 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=38.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---hHHHHHhcCcccccEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---NKELASQYEIRGFPTIK 112 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~~i~~~P~~~ 112 (500)
++.|+++||++|+.+...+.++... +.+..++...+. ...+.+..|+..+|+++
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~ 58 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK-------PAVVELDQHEDGSEIQDYLQELTGQRTVPNVF 58 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC-------cEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE
Confidence 5789999999999999888875432 556666665432 12355667889999974
No 331
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.89 E-value=0.0042 Score=54.92 Aligned_cols=89 Identities=15% Similarity=0.146 Sum_probs=61.9
Q ss_pred CCeEEE-EEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC--------------C-------------CCCCC
Q 010824 393 GKNVLL-EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN--------------D-------------IPGDT 444 (500)
Q Consensus 393 ~~~~~v-~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------~-------------~~~~~ 444 (500)
++.++| .|++.||+.|....+.|.++..+++.. ++.++.+.++.. . .+.+.
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 455554 589999999999999999999888642 456665555421 1 00224
Q ss_pred CCcC------cceEEEEEcCCCceEE-e----cCCCCHHHHHHHHHhhc
Q 010824 445 FEVQ------GYPTVFFRSASGKTVP-Y----EGDRTKEDIVDFIENNR 482 (500)
Q Consensus 445 ~~i~------~~P~~~~~~~~~~~~~-~----~g~~~~~~l~~~i~~~~ 482 (500)
|++. .+|+.+++++++++.. . .+.++.+++++.|+...
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 5553 5899999988887442 2 34589999999998654
No 332
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.87 E-value=0.011 Score=54.18 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=58.4
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEe----------------cChh----------------
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD----------------ANEE---------------- 94 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd----------------~~~~---------------- 94 (500)
+.+.+++.|..+.|++|+++.+.+..+.+. + +|.+..+. |..+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~ 190 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLG 190 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccC
Confidence 345789999999999999999887665432 1 13222221 1100
Q ss_pred ----------------hhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHH
Q 010824 95 ----------------ANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLK 138 (500)
Q Consensus 95 ----------------~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~ 138 (500)
....+.+++|++++|++++-+.+| .+....|....+.|.+.+.
T Consensus 191 ~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G-~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 191 LKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDG-TLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC-CEEEecCCCCHHHHHHHhC
Confidence 011366779999999998887543 4567889999998888764
No 333
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.84 E-value=0.012 Score=49.73 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCccccCCCCCCCCCCeEEEeccchhhhhhc--CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCc
Q 010824 350 PWVKEYKEGKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFN--SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDAD 427 (500)
Q Consensus 350 ~fi~~~~~G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~ 427 (500)
.|++.+...++..+...... ..-+.|..+++.+|.+.+.. .+-.|+|..|...-+.|.-+...|+.++-+|..
T Consensus 68 rfLE~YR~kRl~E~r~~~~k--~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--- 142 (240)
T KOG3170|consen 68 RFLEMYRIKRLAEWRATAEK--AKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--- 142 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---
Confidence 36666665554433321111 24467999999999999843 355788899999999999999999999999974
Q ss_pred eEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEE------ecCC-CCHHHHHHHHHhhc
Q 010824 428 VVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVP------YEGD-RTKEDIVDFIENNR 482 (500)
Q Consensus 428 ~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~------~~g~-~~~~~l~~~i~~~~ 482 (500)
++|+++-... .+. .|.-..+||+++|..|..... +.|- .+.+++..++-+..
T Consensus 143 iKFVki~at~--cIp-NYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 143 IKFVKIPATT--CIP-NYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred ceEEeccccc--ccC-CCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 8998875543 233 267788999999988854222 3333 67899998887654
No 334
>PRK15000 peroxidase; Provisional
Probab=96.79 E-value=0.007 Score=53.32 Aligned_cols=89 Identities=13% Similarity=0.207 Sum_probs=64.0
Q ss_pred CCCeEEEEEECC-CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC----------------------------CCC
Q 010824 392 SGKNVLLEFYAP-WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND----------------------------IPG 442 (500)
Q Consensus 392 ~~~~~~v~f~~~-~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----------------------------~~~ 442 (500)
.++.++|+||.. ||+.|....+.|.++..+++.. ++.++.+.++... .++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 467999999995 9999999999999999999643 5666666554210 001
Q ss_pred CCCCcC------cceEEEEEcCCCceE-Eec----CCCCHHHHHHHHHhh
Q 010824 443 DTFEVQ------GYPTVFFRSASGKTV-PYE----GDRTKEDIVDFIENN 481 (500)
Q Consensus 443 ~~~~i~------~~P~~~~~~~~~~~~-~~~----g~~~~~~l~~~i~~~ 481 (500)
+.|++. .+|+.+++++++++. .+. ..++.+++++.|+..
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 236665 699999998777744 222 237899999999754
No 335
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.78 E-value=0.004 Score=51.51 Aligned_cols=44 Identities=18% Similarity=0.316 Sum_probs=35.9
Q ss_pred CCCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC
Q 010824 392 SGKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436 (500)
Q Consensus 392 ~~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~ 436 (500)
.+++++|+|| +.||+.|....+.+.++..+++. .++.++.|..+
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d 65 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVD 65 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCC
Confidence 4788999998 78999999999999999998853 25777777664
No 336
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=0.0092 Score=46.23 Aligned_cols=100 Identities=20% Similarity=0.253 Sum_probs=76.7
Q ss_pred eccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCC
Q 010824 381 VADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSAS 459 (500)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 459 (500)
++...+..+.. ..+.+++-|...|-+.|..+...|.+++....+ =..++-+|+++-++..+-|.+...|++.+|=++
T Consensus 10 s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 10 SGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred cHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 34555555644 477899999999999999999999999999977 478888999988888888999999999998544
Q ss_pred CceE-E--------ecCC-CCHHHHHHHHHhhc
Q 010824 460 GKTV-P--------YEGD-RTKEDIVDFIENNR 482 (500)
Q Consensus 460 ~~~~-~--------~~g~-~~~~~l~~~i~~~~ 482 (500)
+-.. . +.+. .+.+++++.+.-..
T Consensus 88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iy 120 (142)
T KOG3414|consen 88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIETIY 120 (142)
T ss_pred ceEEEeeCCCCCceEEEEeccHHHHHHHHHHHH
Confidence 3211 1 2222 56788888877654
No 337
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.00065 Score=58.63 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=69.0
Q ss_pred cCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCC
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 470 (500)
...+..++.||++||..|..+...+..++.... ++.|++.+.+..+.++..+.+..+|.+.++..+.++.+..|...
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADP 91 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCc
Confidence 367789999999999999999999999999883 69999999999999999999999999999977766777776544
Q ss_pred HHH
Q 010824 471 KED 473 (500)
Q Consensus 471 ~~~ 473 (500)
...
T Consensus 92 ~~~ 94 (227)
T KOG0911|consen 92 PFL 94 (227)
T ss_pred HHH
Confidence 433
No 338
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.63 E-value=0.01 Score=43.47 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=39.6
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-HHHHHhcCcccccEEEE
Q 010824 50 FIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-KELASQYEIRGFPTIKI 113 (500)
Q Consensus 50 ~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P~~~~ 113 (500)
.-++.|+.+||++|.+.+..+.+ . + +.+-.+|++.+.. .++.+..|...+|++++
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~----~---g--i~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKE----K---G--YDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHH----c---C--CCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34788999999999999877753 1 2 5566677765532 23556678899999964
No 339
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.62 E-value=0.0091 Score=50.86 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=79.4
Q ss_pred CCeEEE-eccchhhhhhcC--CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcce
Q 010824 375 EPVKVL-VADSLQDMVFNS--GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYP 451 (500)
Q Consensus 375 ~~~~~l-~~~~~~~~~~~~--~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P 451 (500)
+.|.++ ++++|-+.+-.. .-.++|..|-+.-+.|.++...+.-+|..+. .++|+++-.+.-... ++|....+|
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP---~vKFckikss~~gas-~~F~~n~lP 213 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYP---IVKFCKIKSSNTGAS-DRFSLNVLP 213 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCC---ceeEEEeeeccccch-hhhcccCCc
Confidence 346666 788999998333 3357788999999999999999999999886 499999988754444 459999999
Q ss_pred EEEEEcCCCceEEec-------CCCCHHHHHHHHHhh
Q 010824 452 TVFFRSASGKTVPYE-------GDRTKEDIVDFIENN 481 (500)
Q Consensus 452 ~~~~~~~~~~~~~~~-------g~~~~~~l~~~i~~~ 481 (500)
++++|..|..+..|. ......++.+||++.
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999997664432332 346678999999875
No 340
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.0017 Score=56.07 Aligned_cols=80 Identities=16% Similarity=0.330 Sum_probs=67.6
Q ss_pred hhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeee
Q 010824 44 TVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQE 123 (500)
Q Consensus 44 ~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~ 123 (500)
..+..+..++.||++||..|.++...+..+++.. . ++.+..++.+..++ ++..+.+...|...++..+ ..+.+
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~---~~~~~k~~a~~~~e--is~~~~v~~vp~~~~~~~~-~~v~~ 85 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-K---NAQFLKLEAEEFPE--ISNLIAVEAVPYFVFFFLG-EKVDR 85 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-h---hheeeeehhhhhhH--HHHHHHHhcCceeeeeecc-hhhhh
Confidence 3347788999999999999999999999999888 2 38999999999888 9999999999999999765 66667
Q ss_pred cCCCCCH
Q 010824 124 YKGPREA 130 (500)
Q Consensus 124 ~~g~~~~ 130 (500)
..|....
T Consensus 86 l~~~~~~ 92 (227)
T KOG0911|consen 86 LSGADPP 92 (227)
T ss_pred hhccCcH
Confidence 7765443
No 341
>PHA03050 glutaredoxin; Provisional
Probab=96.57 E-value=0.0064 Score=47.45 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=41.2
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh-----hhhHHHHHhcCcccccEEEE
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-----EANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-----~~~~~~~~~~~i~~~P~~~~ 113 (500)
.+..+++++ ++.|..+|||+|.+....+.+..-. .+ .+..+|.+. ....++.+.-|.+.+|++++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~----~~--~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI 75 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFK----RG--AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF 75 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCC----cC--CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE
Confidence 345566665 6788899999999998777654221 11 244445443 11223666678889999955
No 342
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.56 E-value=0.013 Score=53.54 Aligned_cols=84 Identities=13% Similarity=0.220 Sum_probs=58.6
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC----------------CC-------------C---
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT----------------AN-------------D--- 439 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~----------------~~-------------~--- 439 (500)
+.+.+++.|+++.|++|+.+.+.+..+.+.- ++.+..+... .+ .
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDSG----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhcC----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 4667899999999999999998877654321 2333322210 00 0
Q ss_pred -C-----------------CCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHH
Q 010824 440 -I-----------------PGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIE 479 (500)
Q Consensus 440 -~-----------------~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~ 479 (500)
. +.++++++++|++++-+.++.+....|..+.++|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 0 122477999999999876677778889999999988874
No 343
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.54 E-value=0.011 Score=60.55 Aligned_cols=98 Identities=15% Similarity=0.285 Sum_probs=74.2
Q ss_pred EcCccChhhhhc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEE
Q 010824 35 TLDHSNFSDTVS-KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 35 ~l~~~~~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~ 113 (500)
.|+++..+.+.. +++.-+-.|+++.|++|......+..++.. +++|..-.+|....++ ++++|++.++|++++
T Consensus 103 ~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~----~p~i~~~~id~~~~~~--~~~~~~v~~VP~~~i 176 (515)
T TIGR03140 103 KLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALL----NPNISHTMIDGALFQD--EVEALGIQGVPAVFL 176 (515)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHh----CCCceEEEEEchhCHH--HHHhcCCcccCEEEE
Confidence 355555554443 344558889999999998777777776665 5569999999999888 999999999999976
Q ss_pred EecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 114 LRNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 114 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
+ + + ..+.|..+.+.+.+.+.+..++
T Consensus 177 -~-~-~--~~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 177 -N-G-E--EFHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred -C-C-c--EEEecCCCHHHHHHHHhhccCc
Confidence 2 2 3 3678999999888888766543
No 344
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.52 E-value=0.0044 Score=51.43 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=37.7
Q ss_pred CCCeEEEEEECCCChh-HhhhhHHHHHHHHHcCCC--CceEEEEEeCCC
Q 010824 392 SGKNVLLEFYAPWCGH-CKKLAPILDEVAVSYQND--ADVVIAKFDATA 437 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~~~~~~~~--~~~~~~~id~~~ 437 (500)
.++.++|+||++||+. |....+.+.++...++.. .++.++.|..+.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4689999999999998 999999999999998653 247777776643
No 345
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.51 E-value=0.002 Score=44.36 Aligned_cols=51 Identities=25% Similarity=0.465 Sum_probs=38.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC----CCCCcCcceEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG----DTFEVQGYPTVFF 455 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~~~ 455 (500)
+++|+.+||++|+.....|.+. ++.+-.+|++.++... +..+..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999988888543 5778888888774332 2237789999975
No 346
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.51 E-value=0.027 Score=43.59 Aligned_cols=92 Identities=8% Similarity=0.191 Sum_probs=67.8
Q ss_pred CccChhhhhc-cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 37 DHSNFSDTVS-KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 37 ~~~~~~~~~~-~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
+.++++.++. +++.++|-|+..--. .....|.++|..++.. +.|+...-. . +...+++. .|.+++++
T Consensus 7 ~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~~~---~--~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 7 SERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY---IKFFATFDS---K--VAKKLGLK-MNEVDFYE 74 (102)
T ss_pred CHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC---CEEEEECcH---H--HHHHcCCC-CCcEEEeC
Confidence 4456889998 888888888866444 3557899999998654 778665522 2 77888775 69999997
Q ss_pred cCCceeeec-CCCCCHHHHHHHHHhh
Q 010824 116 NGGKTIQEY-KGPREADGIVEYLKKQ 140 (500)
Q Consensus 116 ~~~~~~~~~-~g~~~~~~l~~~i~~~ 140 (500)
+..+....| .|..+.+.|.+||...
T Consensus 75 ~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 633444568 7888999999999753
No 347
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=96.49 E-value=0.019 Score=44.68 Aligned_cols=91 Identities=20% Similarity=0.332 Sum_probs=66.6
Q ss_pred CccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
+.++++.++...+.++|-|+..--. .....|.++|..++.. +.|+...-. . +..++++ .|++++|++
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d---~~F~~~~~~---~--~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES---FRFAHTSDK---Q--LLEKYGY--GEGVVLFRP 73 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc---CEEEEEChH---H--HHHhcCC--CCceEEEec
Confidence 3456788888888888888866443 3568889999998654 788766532 3 7788888 688999954
Q ss_pred CC------ceeeecCCCCCHHHHHHHHHhh
Q 010824 117 GG------KTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 117 ~~------~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
.. .....|.|..+.+.|.+||...
T Consensus 74 ~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 74 PRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 21 2234699999999999999764
No 348
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.49 E-value=0.018 Score=49.88 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=29.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSS 79 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~ 79 (500)
.+++.++.|+...||+|..+.+.+..+.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 678899999999999999999999999888744
No 349
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.49 E-value=0.0076 Score=44.40 Aligned_cols=79 Identities=23% Similarity=0.375 Sum_probs=57.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCc-eeeecCCCCCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGK-TIQEYKGPREA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~~g~~~~ 130 (500)
+++|..+.|+-|..+...+..+.... .+.+-.||.+.++. +..+|+. .+|.+.+=..++. ......+..+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~~--l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~ 73 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDPE--LFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDE 73 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTHH--HHHHSCT-STSEEEETT-GGGCTSEEEESSB-H
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCHH--HHHHhcC-CCCEEEEcCcccccccceeCCCCCH
Confidence 68899999999999988888754332 28899999998877 9999996 5899766332111 13466678899
Q ss_pred HHHHHHHH
Q 010824 131 DGIVEYLK 138 (500)
Q Consensus 131 ~~l~~~i~ 138 (500)
+.|.+|++
T Consensus 74 ~~L~~~L~ 81 (81)
T PF05768_consen 74 EQLRAWLE 81 (81)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 99998874
No 350
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.48 E-value=0.011 Score=52.17 Aligned_cols=77 Identities=26% Similarity=0.421 Sum_probs=50.8
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC-----------------------------------
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT----------------------------------- 436 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~----------------------------------- 436 (500)
+.+..++.|+++.|++|+.+.+.+.+ ..+ ++.+..+...
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~~--~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~ 149 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP----NAD--GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPP 149 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh----ccC--ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCC
Confidence 46789999999999999999998875 111 2222222111
Q ss_pred ----------CCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHH
Q 010824 437 ----------ANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFI 478 (500)
Q Consensus 437 ----------~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i 478 (500)
.+...++.++++++|+++ ++.|. .+.|..+.++|.++|
T Consensus 150 ~~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~---~~~G~~~~~~l~~~L 197 (197)
T cd03020 150 PAASCDNPVAANLALGRQLGVNGTPTIV-LADGR---VVPGAPPAAQLEALL 197 (197)
T ss_pred CccccCchHHHHHHHHHHcCCCcccEEE-ECCCe---EecCCCCHHHHHhhC
Confidence 111113357899999997 65443 367888888888764
No 351
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.41 E-value=0.038 Score=43.71 Aligned_cols=72 Identities=18% Similarity=0.365 Sum_probs=57.5
Q ss_pred Chhhhh--ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccE-EEEEec
Q 010824 40 NFSDTV--SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPT-IKILRN 116 (500)
Q Consensus 40 ~~~~~~--~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~-~~~~~~ 116 (500)
..++++ .+.+.++|-|-..|.+.|.++-..+.+++++.+.- ..++.||.+.-+. +.+.|.+. -|. ++||-.
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vpd--fn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVPD--FNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTHC--CHHHTTS--SSEEEEEEET
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccchh--hhcccccC-CCeEEEEEec
Confidence 344555 56788999999999999999999999999999876 8999999999888 99999998 565 555533
Q ss_pred C
Q 010824 117 G 117 (500)
Q Consensus 117 ~ 117 (500)
+
T Consensus 84 n 84 (133)
T PF02966_consen 84 N 84 (133)
T ss_dssp T
T ss_pred C
Confidence 3
No 352
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.39 E-value=0.012 Score=52.11 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=58.9
Q ss_pred eEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC----------------C-----------CCCCCCCc
Q 010824 395 NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN----------------D-----------IPGDTFEV 447 (500)
Q Consensus 395 ~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----------------~-----------~~~~~~~i 447 (500)
.+++.|++.||+.|....+.|.++...++.. ++.++.+.++.. . .+.+.|++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg~ 106 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLGM 106 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcCC
Confidence 4455789999999999999999999998642 566666665531 0 01223444
Q ss_pred C--------cceEEEEEcCCCceE-EecC----CCCHHHHHHHHHhhc
Q 010824 448 Q--------GYPTVFFRSASGKTV-PYEG----DRTKEDIVDFIENNR 482 (500)
Q Consensus 448 ~--------~~P~~~~~~~~~~~~-~~~g----~~~~~~l~~~i~~~~ 482 (500)
. .+|+.+++++++++. .+.+ .++.+++.+.|+...
T Consensus 107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq 154 (203)
T cd03016 107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ 154 (203)
T ss_pred ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence 3 356789998777744 3222 467889999987643
No 353
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.37 E-value=0.016 Score=52.95 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=61.1
Q ss_pred CCeEEEEEE-CCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC-----------------C-----------CCCC
Q 010824 393 GKNVLLEFY-APWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN-----------------D-----------IPGD 443 (500)
Q Consensus 393 ~~~~~v~f~-~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------~-----------~~~~ 443 (500)
++.++++|| +.||+.|....+.|.+...+++.. ++.++.+.++.. . .+++
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 557777777 899999999999999999998642 455555554431 0 1123
Q ss_pred CCCcC-----cceEEEEEcCCCceE-Ee----cCCCCHHHHHHHHHhh
Q 010824 444 TFEVQ-----GYPTVFFRSASGKTV-PY----EGDRTKEDIVDFIENN 481 (500)
Q Consensus 444 ~~~i~-----~~P~~~~~~~~~~~~-~~----~g~~~~~~l~~~i~~~ 481 (500)
.|++. ..|+.+++++++++. .+ ...++.+++.+.|+..
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 45653 589999998777744 22 2347899999988654
No 354
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.31 E-value=0.0032 Score=45.23 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=44.5
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC---CCcCcceEEEEEcCCCceEEecCCCCHHHH
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT---FEVQGYPTVFFRSASGKTVPYEGDRTKEDI 474 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l 474 (500)
.+|+.++|++|+.....|.+. ++.|-.+|++.++...+. .+..++|.+++- |.. ..|+.+.+.|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~~--g~~---~~~G~~~~~~ 68 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVAD--GDL---SWSGFRPDKL 68 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEEC--CCc---EEeccCHHHH
Confidence 578889999999999988753 577777898877544332 366789998552 321 2333555555
Q ss_pred HH
Q 010824 475 VD 476 (500)
Q Consensus 475 ~~ 476 (500)
.+
T Consensus 69 ~~ 70 (72)
T TIGR02194 69 KA 70 (72)
T ss_pred Hh
Confidence 43
No 355
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.28 E-value=0.035 Score=39.75 Aligned_cols=68 Identities=19% Similarity=0.413 Sum_probs=43.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-HHHHHhcCcccccEEEEEecCCceeeecCCCCCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-KELASQYEIRGFPTIKILRNGGKTIQEYKGPREA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~ 130 (500)
++.|..+||+.|.+.+..+.+ . + +.+..+|.+.+.. ..+....|...+|.+++ +|+.+ | ..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~----~---~--i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi---~g~~i----g--g~ 64 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE----N---G--ISYEEIPLGKDITGRSLRAVTGAMTVPQVFI---DGELI----G--GS 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH----c---C--CCcEEEECCCChhHHHHHHHhCCCCcCeEEE---CCEEE----e--CH
Confidence 678889999999999777663 1 2 5566777665543 22444468889999843 33432 2 25
Q ss_pred HHHHHHH
Q 010824 131 DGIVEYL 137 (500)
Q Consensus 131 ~~l~~~i 137 (500)
++|.+|+
T Consensus 65 ~~l~~~l 71 (72)
T cd03029 65 DDLEKYF 71 (72)
T ss_pred HHHHHHh
Confidence 6666654
No 356
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.25 E-value=0.0051 Score=45.43 Aligned_cols=51 Identities=20% Similarity=0.438 Sum_probs=35.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC-----CCCCCCCcCcceEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND-----IPGDTFEVQGYPTV 453 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~i~~~P~~ 453 (500)
++.|+++||+.|+.+.+.|.++.. .+.++.++...+. ...+..+..++|.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v 57 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV 57 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE
Confidence 578999999999999999988754 2455555655432 12233466789997
No 357
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.24 E-value=0.024 Score=44.83 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=71.3
Q ss_pred eccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCC
Q 010824 381 VADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSAS 459 (500)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~ 459 (500)
++-..+..+++ .++.+++-|...|-+.|..+...|.+++...++ =..++.+|+++-++..+.|.+. -|+.++|=-+
T Consensus 7 s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~--~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 7 SGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN--FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred ccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc--ceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 44556666654 588899999999999999999999999999987 4889999999888887778888 7776555312
Q ss_pred CceE--Ee--------cCC-CCHHHHHHHHHhhc
Q 010824 460 GKTV--PY--------EGD-RTKEDIVDFIENNR 482 (500)
Q Consensus 460 ~~~~--~~--------~g~-~~~~~l~~~i~~~~ 482 (500)
++.+ .+ .+. .+.+++++-+.-..
T Consensus 84 nkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 84 NKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp TEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred CeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 2222 22 223 45788888776543
No 358
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.19 E-value=0.011 Score=43.52 Aligned_cols=73 Identities=7% Similarity=0.116 Sum_probs=51.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC---CCCcCcceEEEEEcCCCceEEecCCCCHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD---TFEVQGYPTVFFRSASGKTVPYEGDRTKED 473 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~---~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~ 473 (500)
+..|+.+||++|......|.+. ++.|-.+|++.++...+ ..+...+|.+++ .+ .... +.+.+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~---~~~~-Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GD---LSWS-GFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CC---EEEe-cCCHHH
Confidence 5688999999999988888552 57888889987654321 235578999954 22 2233 488888
Q ss_pred HHHHHHhhcC
Q 010824 474 IVDFIENNRD 483 (500)
Q Consensus 474 l~~~i~~~~~ 483 (500)
|.+.+..+..
T Consensus 69 l~~~~~~~~~ 78 (81)
T PRK10329 69 INRLHPAPHA 78 (81)
T ss_pred HHHHHHhhhh
Confidence 8888876543
No 359
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.10 E-value=0.0054 Score=44.99 Aligned_cols=55 Identities=18% Similarity=0.264 Sum_probs=38.2
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC---CCCCCcCcceEEEE
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP---GDTFEVQGYPTVFF 455 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~i~~~P~~~~ 455 (500)
++.-+++|+.+||++|+.....|.+. ++.+..+|++.++.. .+..+..++|.+++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i 63 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI 63 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE
Confidence 34446789999999999999988643 466666788765322 12235678999953
No 360
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.09 E-value=0.01 Score=51.25 Aligned_cols=43 Identities=19% Similarity=0.379 Sum_probs=36.5
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~ 436 (500)
.+++++|.|+|+||+.|++ .+.|+++.+.+++. ++.++.+.+.
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~-gl~Vlg~p~n 66 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQ-GFVVLGFPCN 66 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhC-CeEEEEeecc
Confidence 3689999999999999975 88999999999753 6888888775
No 361
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.08 E-value=0.029 Score=50.02 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=61.2
Q ss_pred CCe-EEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC---------------------------CCCCCC
Q 010824 393 GKN-VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN---------------------------DIPGDT 444 (500)
Q Consensus 393 ~~~-~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~~ 444 (500)
++. +++.|++.||+.|....+.|.++..+++.. ++.++.+.++.. ..+.+.
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 444 567889999999999999999999998542 466666655431 011223
Q ss_pred CCc-------CcceEEEEEcCCCceE-E--ec--CCCCHHHHHHHHHhh
Q 010824 445 FEV-------QGYPTVFFRSASGKTV-P--YE--GDRTKEDIVDFIENN 481 (500)
Q Consensus 445 ~~i-------~~~P~~~~~~~~~~~~-~--~~--g~~~~~~l~~~i~~~ 481 (500)
|++ ..+|+++++++++++. . |. ..++.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 554 2689999998877743 2 22 246899999999754
No 362
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.06 E-value=0.0093 Score=45.83 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=34.7
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC-------CCCCcCcceEEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG-------DTFEVQGYPTVFFR 456 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-------~~~~i~~~P~~~~~ 456 (500)
++.|..+|||+|+.....|.+. ++.+..+|++..+.-. +..+..++|.+ ++
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~--------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V-fi 67 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL--------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV-FV 67 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE-EE
Confidence 6679999999999988877665 3445567777654421 11245789998 44
No 363
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.05 E-value=0.018 Score=41.32 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=36.3
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-HHHHHhcCcccccEEEE
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-KELASQYEIRGFPTIKI 113 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P~~~~ 113 (500)
+.|..++|++|+.....+.+ .+ +.+-.+|.+.++. .+..+..|...+|++++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 56788999999999877763 13 6677778776653 11223448889999855
No 364
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.03 E-value=0.016 Score=41.22 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=37.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++.|+++||++|+.....+.+.. +.+..+|...++ ...+.+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 56788999999999987777532 456677776654 234555667788998854
No 365
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.03 E-value=0.026 Score=42.89 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=42.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEec--Chhh----------------------------hHHHHH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA--NEEA----------------------------NKELAS 101 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~--~~~~----------------------------~~~~~~ 101 (500)
++.|+++.|++|..+.+.+.++.....++ +.+..... .... ....++
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGG---VRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCc---EEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 46799999999999999999987544432 55554432 2210 113566
Q ss_pred hcCcccccEEEEEe
Q 010824 102 QYEIRGFPTIKILR 115 (500)
Q Consensus 102 ~~~i~~~P~~~~~~ 115 (500)
+.|+.++|++++.+
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999998855
No 366
>PHA03050 glutaredoxin; Provisional
Probab=96.02 E-value=0.011 Score=46.25 Aligned_cols=54 Identities=15% Similarity=0.154 Sum_probs=35.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC-------CCCCCCcCcceEEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI-------PGDTFEVQGYPTVFFR 456 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-------~~~~~~i~~~P~~~~~ 456 (500)
++.|..+|||+|+.....|.+..... -.|-.+|++.++. +.+..+..++|.+ ++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I-fI 75 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENELRDYFEQITGGRTVPRI-FF 75 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE-EE
Confidence 67899999999999988887763211 1345567765322 1222455789999 44
No 367
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.99 E-value=0.033 Score=40.23 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=36.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcc-cccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIR-GFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~-~~P~~~~ 113 (500)
++.|..++|++|......+.+. + +.+-.+|++.++. .++.+..+.. .+|++++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-------~--i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i 57 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-------G--VDYEEIDVDGDPALREEMINRSGGRRTVPQIFI 57 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-------C--CcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE
Confidence 5678899999999998777641 2 5566667666432 2344556766 8998854
No 368
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.99 E-value=0.013 Score=42.85 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=36.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++.|+.++|++|......+.+. + +.+-.+|++.++ ..++.+..|...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-------~--i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-------G--VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-------C--CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3678899999999998877642 2 445555555543 333555567888999844
No 369
>PRK10329 glutaredoxin-like protein; Provisional
Probab=95.93 E-value=0.034 Score=40.86 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=48.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-HHHHHhcCcccccEEEEEecCCceeeecCCCCCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-KELASQYEIRGFPTIKILRNGGKTIQEYKGPREA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~ 130 (500)
++.|..+||++|.+.+..+.+ .| |.|-.+|.+.++. .+..+..|...+|++++ ++.. -+....
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-------~g--I~~~~idi~~~~~~~~~~~~~g~~~vPvv~i---~~~~----~~Gf~~ 66 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-------RG--FDFEMINVDRVPEAAETLRAQGFRQLPVVIA---GDLS----WSGFRP 66 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHcCCCCcCEEEE---CCEE----EecCCH
Confidence 578889999999998777743 13 7777888876553 12234557788999965 2222 225677
Q ss_pred HHHHHHHHhh
Q 010824 131 DGIVEYLKKQ 140 (500)
Q Consensus 131 ~~l~~~i~~~ 140 (500)
+.|.+.+...
T Consensus 67 ~~l~~~~~~~ 76 (81)
T PRK10329 67 DMINRLHPAP 76 (81)
T ss_pred HHHHHHHHhh
Confidence 7777766543
No 370
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.91 E-value=0.0088 Score=42.60 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=35.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC----CCCcCcceEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD----TFEVQGYPTVF 454 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~~ 454 (500)
++.|+++||++|+.+...|.+.. +.+..+|+..+....+ ..+..++|.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 56889999999999999888763 5666788887654322 13446788774
No 371
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.91 E-value=0.038 Score=39.70 Aligned_cols=53 Identities=13% Similarity=0.187 Sum_probs=38.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++.|+.++|+.|++....+++ .+ +.+..+|+..++ ..++.+..+-..+|++++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 567889999999999877764 13 566677776644 334666677788999954
No 372
>PRK13189 peroxiredoxin; Provisional
Probab=95.89 E-value=0.032 Score=50.03 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=59.3
Q ss_pred CC-eEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCC---------------------------CCCCC
Q 010824 393 GK-NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAND---------------------------IPGDT 444 (500)
Q Consensus 393 ~~-~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---------------------------~~~~~ 444 (500)
++ .+++.|++.||+.|....+.|.++..+++.. ++.++.+.++... .+.+.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 45 4445678999999999999999999998542 4555555544210 00123
Q ss_pred CCcC-------cceEEEEEcCCCceE-Eec----CCCCHHHHHHHHHhh
Q 010824 445 FEVQ-------GYPTVFFRSASGKTV-PYE----GDRTKEDIVDFIENN 481 (500)
Q Consensus 445 ~~i~-------~~P~~~~~~~~~~~~-~~~----g~~~~~~l~~~i~~~ 481 (500)
|++. .+|+.+++++++++. ... ..++.+++.+.|+..
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4543 579999998887743 211 457889999999754
No 373
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.87 E-value=0.022 Score=43.73 Aligned_cols=60 Identities=22% Similarity=0.221 Sum_probs=38.2
Q ss_pred hhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh-H----HHHHhcCcccccEEEE
Q 010824 43 DTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN-K----ELASQYEIRGFPTIKI 113 (500)
Q Consensus 43 ~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~-~----~~~~~~~i~~~P~~~~ 113 (500)
+.+++++ ++.|..+|||+|.+....+.+. + +.+..+|.+.++. . .+.+..|...+|.+++
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~-------~--i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi 67 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTL-------G--VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFV 67 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHc-------C--CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEE
Confidence 4455555 6788899999999998766543 2 4445555554432 1 2344456788999843
No 374
>PRK13191 putative peroxiredoxin; Provisional
Probab=95.73 E-value=0.043 Score=48.92 Aligned_cols=88 Identities=11% Similarity=0.147 Sum_probs=60.0
Q ss_pred CCeEE-EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC---------------------------CCCC
Q 010824 393 GKNVL-LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI---------------------------PGDT 444 (500)
Q Consensus 393 ~~~~~-v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------------------------~~~~ 444 (500)
++.++ +.|++.||+.|....+.|.+++..++.. ++.++.+.++.... +.+.
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 44444 4789999999999999999999998542 46666665543210 1123
Q ss_pred CCc-------CcceEEEEEcCCCceEE---ec--CCCCHHHHHHHHHhh
Q 010824 445 FEV-------QGYPTVFFRSASGKTVP---YE--GDRTKEDIVDFIENN 481 (500)
Q Consensus 445 ~~i-------~~~P~~~~~~~~~~~~~---~~--g~~~~~~l~~~i~~~ 481 (500)
|++ ..+|+.+++++++++.. +. ..++.+++++.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 443 24799999987877442 22 347899999999754
No 375
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.68 E-value=0.17 Score=44.84 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=49.5
Q ss_pred cccccccccCceEEcCccC---hhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCC
Q 010824 22 SAEESAESKEFVLTLDHSN---FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSH 80 (500)
Q Consensus 22 ~~~~~~~~~~~v~~l~~~~---~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~ 80 (500)
+..++.++++.|..++.++ +-+..+.++|.++.|-+-.||+-..-.+.+.++++++.+.
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~ 134 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV 134 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh
Confidence 3455567788899998877 4455588999999999999999999999999999999875
No 376
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.64 E-value=0.013 Score=42.22 Aligned_cols=49 Identities=10% Similarity=0.145 Sum_probs=35.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC----CCCCCcCcceEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP----GDTFEVQGYPTV 453 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~i~~~P~~ 453 (500)
++.|+.++|+.|+.....|.+. ++.+..+|+..++.. .+..+-..+|.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 5678999999999999888863 467777888876542 222344678988
No 377
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.63 E-value=0.41 Score=42.37 Aligned_cols=105 Identities=21% Similarity=0.253 Sum_probs=69.2
Q ss_pred CccChhhhhccCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhc-CCCCCe--EEEEEecChhh-----------------
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCG-HCKKLAPEYEKAASELS-SHDPPV--VLAKVDANEEA----------------- 95 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~-~C~~~~~~~~~~~~~~~-~~~~~v--~~~~vd~~~~~----------------- 95 (500)
+.+.+...--++++++|+|-=..|+ .|-.....+.++.+++. ..+.++ .+..||-.++.
T Consensus 56 ~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~ 135 (207)
T COG1999 56 DGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWI 135 (207)
T ss_pred CCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCee
Confidence 3444555556899999998877788 88888888999999998 444444 45555544432
Q ss_pred --------hHHHHHhcCcc---------------cccEEEEEecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 96 --------NKELASQYEIR---------------GFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 96 --------~~~~~~~~~i~---------------~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
.++++++|++. +...+++++.+|.....|.+....+.+.+.+++.+
T Consensus 136 ~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 136 GLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred eeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 11344444433 23455666666777777777777777777777654
No 378
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.63 E-value=0.011 Score=42.74 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=35.1
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC----CCCcC-cceEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD----TFEVQ-GYPTVF 454 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~-~~P~~~ 454 (500)
++.|+.++|++|......|.+. ++.+-.+|++.++...+ ..+.. ++|.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~ 56 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK--------GVDYEEIDVDGDPALREEMINRSGGRRTVPQIF 56 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEE
Confidence 5688999999999998888763 46677788877633322 13444 899773
No 379
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.26 Score=41.01 Aligned_cols=99 Identities=19% Similarity=0.304 Sum_probs=66.6
Q ss_pred ChhhhhccCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh-------------------hhhHHH
Q 010824 40 NFSDTVSKHNFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE-------------------EANKEL 99 (500)
Q Consensus 40 ~~~~~~~~~~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------------------~~~~~~ 99 (500)
.+...-..+++++++|| ..+++-|....-.|.....++...+ ..+..|..+. ++...+
T Consensus 22 ~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v 99 (157)
T COG1225 22 TVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEV 99 (157)
T ss_pred EEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHH
Confidence 34444457779999999 6689999999999999999998754 4455555443 223347
Q ss_pred HHhcCccc------------ccEEEEEecCCceeeecCCC---CCHHHHHHHHHhh
Q 010824 100 ASQYEIRG------------FPTIKILRNGGKTIQEYKGP---READGIVEYLKKQ 140 (500)
Q Consensus 100 ~~~~~i~~------------~P~~~~~~~~~~~~~~~~g~---~~~~~l~~~i~~~ 140 (500)
|++||+.+ .++.++++.+|...+.+... -..+++++.+.+.
T Consensus 100 ~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 100 AEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred HHHhCcccccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 77777633 46778888877776666432 3455666666543
No 380
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.47 E-value=0.0089 Score=43.80 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=34.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC----CCCcCcceEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD----TFEVQGYPTV 453 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~ 453 (500)
++.|+.+||++|......|.+. ++.+-.+|++.++...+ ..+..++|.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~--------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i 53 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK--------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI 53 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc--------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE
Confidence 3578899999999999988764 35566667766543322 2345789998
No 381
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=95.44 E-value=0.024 Score=40.59 Aligned_cols=66 Identities=17% Similarity=0.311 Sum_probs=43.6
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC---CCCCcCcceEEEEEcCCCceEEecCCCCHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG---DTFEVQGYPTVFFRSASGKTVPYEGDRTKED 473 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~ 473 (500)
++.|..+||++|......|.+. ++.+..+|++.++... ...+..++|.+ ++ +| +.+ | ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i-fi-~g-~~i---g--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQV-FI-DG-ELI---G--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeE-EE-CC-EEE---e--CHHH
Confidence 5789999999999998888753 4667777887665321 11356789998 44 23 222 2 3667
Q ss_pred HHHHH
Q 010824 474 IVDFI 478 (500)
Q Consensus 474 l~~~i 478 (500)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 77665
No 382
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.36 E-value=0.048 Score=41.08 Aligned_cols=62 Identities=18% Similarity=0.342 Sum_probs=38.4
Q ss_pred hhhhccCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcccccEEEE
Q 010824 42 SDTVSKHNFIVVEFYA----PWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIRGFPTIKI 113 (500)
Q Consensus 42 ~~~~~~~~~~lv~f~~----~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~~~P~~~~ 113 (500)
+.++++++. +|+-.+ +||++|.+....+.+. + +.+-.+|...++. .++.+..|-..+|++++
T Consensus 2 ~~~i~~~~v-vvf~k~~~~~~~Cp~C~~ak~~L~~~-------~--i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 2 KKLIKENPV-VLFMKGTPEEPRCGFSRKVVQILNQL-------G--VDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred hhhhccCCE-EEEEcCCCCCCCCcHHHHHHHHHHHc-------C--CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 455666653 333332 7999999987766653 2 4456666554432 33555567788999844
No 383
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.30 E-value=0.074 Score=40.65 Aligned_cols=63 Identities=14% Similarity=0.289 Sum_probs=40.3
Q ss_pred hhhhhccCCeEEEEEE----CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcccccEEEE
Q 010824 41 FSDTVSKHNFIVVEFY----APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIRGFPTIKI 113 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~----~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~~~P~~~~ 113 (500)
.+.++++++. +|+-. .+|||+|.+....+.+. + +.+..+|...++. ..+.+..|...+|.+++
T Consensus 5 v~~~i~~~~V-vvf~kg~~~~~~Cp~C~~ak~lL~~~-------~--i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 5 IKEQIKENPV-VLYMKGTPQFPQCGFSARAVQILKAC-------G--VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHhccCCE-EEEEccCCCCCCCchHHHHHHHHHHc-------C--CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 4566667664 34333 28999999998777652 2 4566677655432 23555567778999955
No 384
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.28 E-value=0.068 Score=47.19 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=59.9
Q ss_pred CCeEEEEEEC-CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC----------------------------CCC
Q 010824 393 GKNVLLEFYA-PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI----------------------------PGD 443 (500)
Q Consensus 393 ~~~~~v~f~~-~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----------------------------~~~ 443 (500)
++.++|+||. .||+.|....+.+.++..+++.. ++.++.|+++.... +.+
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 5688889995 78999988889999999988643 56666666653210 012
Q ss_pred CCCcC------cceEEEEEcCCCceEE-e----cCCCCHHHHHHHHHhh
Q 010824 444 TFEVQ------GYPTVFFRSASGKTVP-Y----EGDRTKEDIVDFIENN 481 (500)
Q Consensus 444 ~~~i~------~~P~~~~~~~~~~~~~-~----~g~~~~~~l~~~i~~~ 481 (500)
.|++. .+|+.+++++++++.. + ...++.+++++.|...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 34543 4689999987877442 2 1336778888888654
No 385
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.23 E-value=0.078 Score=45.69 Aligned_cols=27 Identities=30% Similarity=0.601 Sum_probs=22.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCC
Q 010824 54 EFYAPWCGHCKKLAPEYEKAASELSSH 80 (500)
Q Consensus 54 ~f~~~~c~~C~~~~~~~~~~~~~~~~~ 80 (500)
+|..|.|++|-...|.|.++...+...
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~ 28 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK 28 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc
Confidence 688999999999999999999999765
No 386
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.04 E-value=0.02 Score=44.10 Aligned_cols=91 Identities=20% Similarity=0.187 Sum_probs=61.4
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhh---HHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLA---PILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPT 452 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~---~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~ 452 (500)
....++.+++++.+ ......+++|.+ .|..+.+.. =++-++.+.+++ .+..+-++-+....+..+|++...|+
T Consensus 10 g~~~vd~~~ld~~l-~~~~~~vlf~~g-Dp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 10 GWPRVDADTLDAFL-AAPGDAVLFFAG-DPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp TEEEE-CCCHHHHH-HCCSCEEEEESS--TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred CCeeechhhHHHHH-hCCCcEEEEECC-CCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 47789999999998 445555555544 444444444 477778888876 56676777666677778899999999
Q ss_pred EEEEcCCCceEEecCCCC
Q 010824 453 VFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 453 ~~~~~~~~~~~~~~g~~~ 470 (500)
++++..|.-.....|-.+
T Consensus 86 Lvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 86 LVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp EEEEETTEEEEEEESSST
T ss_pred EEEEECCEEEEEecCeec
Confidence 999976655556666443
No 387
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=95.01 E-value=0.34 Score=41.64 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=43.9
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCG-HCKKLAPEYEKAASELSSHDPPVVLAKVDANE 93 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~-~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~ 93 (500)
..+-+.+.+...--++++++|.|.=..|+ .|-.....+.++.+++...+.++.+..|.++-
T Consensus 37 L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 37 LTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 34445555666556889999999888896 89888889999998887655556666666554
No 388
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.12 Score=37.89 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=36.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hH-HHHHhc-CcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NK-ELASQY-EIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~-~~~~~~-~i~~~P~~~~ 113 (500)
++.|..++||+|++....+. ..+ +.+..++.+..+ .. +..++- |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 57788999999999977666 223 555665555544 21 234444 7899999977
No 389
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=94.91 E-value=0.011 Score=53.86 Aligned_cols=96 Identities=22% Similarity=0.473 Sum_probs=75.2
Q ss_pred Chhhhhcc--CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEe-cChhhhHHHHHhcCcccccEEEEEec
Q 010824 40 NFSDTVSK--HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVD-ANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 40 ~~~~~~~~--~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd-~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
...++++. ..++-+.||+.||+..+..+|.+.-....+.. +....++ ....++ +...+++.+.|++.+...
T Consensus 66 ~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lps--v~s~~~~~~~ps~~~~n~ 139 (319)
T KOG2640|consen 66 VLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPS--VFSSYGIHSEPSNLMLNQ 139 (319)
T ss_pred HHHHhhccccCCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhccc--chhccccccCCcceeecc
Confidence 34455544 67899999999999999999999988887764 2233333 223344 889999999999999986
Q ss_pred CCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 117 GGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 117 ~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
- -..+|.|.++..+|.+|..+.++-
T Consensus 140 t--~~~~~~~~r~l~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 140 T--CPASYRGERDLASLVNFYTEITPM 164 (319)
T ss_pred c--cchhhcccccHHHHHHHHHhhccc
Confidence 5 557999999999999999998863
No 390
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=94.88 E-value=0.03 Score=42.81 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=35.8
Q ss_pred CCeEEEEEEC----CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC----CCCCcCcceEEE
Q 010824 393 GKNVLLEFYA----PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG----DTFEVQGYPTVF 454 (500)
Q Consensus 393 ~~~~~v~f~~----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~~ 454 (500)
+.+++|+-.+ +||++|......|.+. ++.|..+|++.++... +..+..++|.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~--------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf 72 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC--------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY 72 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHc--------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE
Confidence 4566655543 8999999998888775 3556678887654332 123446889884
No 391
>PRK10638 glutaredoxin 3; Provisional
Probab=94.79 E-value=0.064 Score=39.65 Aligned_cols=53 Identities=17% Similarity=0.302 Sum_probs=37.2
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~ 113 (500)
++.|..++|++|++....+.+. + +.+..+|++.++ ..++.+..|...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-------g--i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-------G--VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------C--CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5677889999999998777642 2 455666665543 334666678888998854
No 392
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=94.71 E-value=0.075 Score=40.28 Aligned_cols=59 Identities=20% Similarity=0.354 Sum_probs=42.4
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC--------------------------------CCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP--------------------------------GDT 444 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--------------------------------~~~ 444 (500)
+..|+++.|++|..+.+.+.++...... ++.+....+...... ...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARA 78 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999855554 466655555444321 224
Q ss_pred CCcCcceEEEEEc
Q 010824 445 FEVQGYPTVFFRS 457 (500)
Q Consensus 445 ~~i~~~P~~~~~~ 457 (500)
+++.++|++++.+
T Consensus 79 ~g~~g~Pt~v~~~ 91 (98)
T cd02972 79 LGVTGTPTFVVNG 91 (98)
T ss_pred cCCCCCCEEEECC
Confidence 6788999998874
No 393
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.045 Score=40.08 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=36.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC--C---CCCC-CcCcceEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI--P---GDTF-EVQGYPTVFF 455 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~~~~-~i~~~P~~~~ 455 (500)
++.|..++||+|......|.+. ++.|..+|++.++. . .+.. +.+++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5688999999999988887732 57777788877763 2 1122 5689999854
No 394
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=94.53 E-value=0.044 Score=41.29 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=35.2
Q ss_pred CCeEEEEEEC----CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC----CCCCcCcceEE
Q 010824 393 GKNVLLEFYA----PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG----DTFEVQGYPTV 453 (500)
Q Consensus 393 ~~~~~v~f~~----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~ 453 (500)
+.+++|+-.+ +||++|+.....|.+. ++.|-.+|+..++... +..+..++|.+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~--------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v 67 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL--------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL 67 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc--------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE
Confidence 3566665543 7999999988888775 3556667777654332 22345689998
No 395
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.32 Score=37.41 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=43.0
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh---HHHHHhcCcccccEEEE
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN---KELASQYEIRGFPTIKI 113 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i~~~P~~~~ 113 (500)
++.++.+++ +|.|..+||+.|+++...|.+ + +.+..+..+|-..+.. ..+.+.-+.+.+|.+++
T Consensus 7 v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISENP--VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcCC--EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 566666665 577889999999998777766 3 3346677777664432 12333345668999877
No 396
>PRK10638 glutaredoxin 3; Provisional
Probab=93.79 E-value=0.066 Score=39.60 Aligned_cols=49 Identities=10% Similarity=0.232 Sum_probs=34.7
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC----CCCCcCcceEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG----DTFEVQGYPTV 453 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~ 453 (500)
+++|..+||++|+.....|.+. ++.+..+|++.++... +..+...+|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~--------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i 56 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK--------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI 56 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc--------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 5678889999999998888864 3566677887664332 22345678987
No 397
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.70 E-value=0.091 Score=40.29 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=57.9
Q ss_pred eccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC----CCCCCCcC-cceEEE
Q 010824 381 VADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI----PGDTFEVQ-GYPTVF 454 (500)
Q Consensus 381 ~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~-~~P~~~ 454 (500)
+.+++++++.. .+++++|+=++..|+-.......|++......+ .+.++.+|+-.+-. +.++++++ .-|.++
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~--~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD--EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc--cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEE
Confidence 45677777743 477888877999999999999999999887765 38889999877633 34567775 689999
Q ss_pred EEcCCCceEE-ecCCCCHHHH
Q 010824 455 FRSASGKTVP-YEGDRTKEDI 474 (500)
Q Consensus 455 ~~~~~~~~~~-~~g~~~~~~l 474 (500)
++.+|..+-. =.+.++.+.|
T Consensus 84 li~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 84 LIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEETTEEEEEEEGGG-SHHHH
T ss_pred EEECCEEEEECccccCCHHhc
Confidence 9965543222 2245776665
No 398
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=93.50 E-value=0.7 Score=35.99 Aligned_cols=91 Identities=7% Similarity=0.142 Sum_probs=62.6
Q ss_pred CccChhhhhccC-CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 37 DHSNFSDTVSKH-NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 37 ~~~~~~~~~~~~-~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
+.++++.++... +.++|-|+...-+ .....|.++|..+... +.|+...-. . +.+++++. .|.+++|+
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd---~~F~~t~~~---~--~~~~~~~~-~~~vvl~r 74 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED---YKFHHTFDS---E--IFKSLKVS-PGQLVVFQ 74 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC---CEEEEEChH---H--HHHhcCCC-CCceEEEC
Confidence 345577877666 7888877766433 3567889999998665 888766532 3 77888886 48888886
Q ss_pred cCC------ceeeecCCC-CCHHH-HHHHHHh
Q 010824 116 NGG------KTIQEYKGP-READG-IVEYLKK 139 (500)
Q Consensus 116 ~~~------~~~~~~~g~-~~~~~-l~~~i~~ 139 (500)
+.. .....|.|. .+.+. |.+|+..
T Consensus 75 p~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 75 PEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred cHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 541 122467777 56655 9999875
No 399
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.46 E-value=0.2 Score=41.91 Aligned_cols=32 Identities=38% Similarity=0.710 Sum_probs=27.4
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQ 423 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~ 423 (500)
+.+.+++.|++++|++|+.+.+.+.++....+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35678899999999999999999999876654
No 400
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=93.01 E-value=0.32 Score=41.77 Aligned_cols=102 Identities=25% Similarity=0.442 Sum_probs=75.1
Q ss_pred ceEEc-CccChhhhhccC---CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCccc
Q 010824 32 FVLTL-DHSNFSDTVSKH---NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRG 107 (500)
Q Consensus 32 ~v~~l-~~~~~~~~~~~~---~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 107 (500)
.|..+ +.+.|-..+.+. -.++|..|-+.-+-|..+...+.-+|.++ |.+.|.++-.+.-. ...+|...+
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey----P~vKFckikss~~g---as~~F~~n~ 211 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY----PIVKFCKIKSSNTG---ASDRFSLNV 211 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC----CceeEEEeeecccc---chhhhcccC
Confidence 45555 456788888544 35688899999999999988888888775 45999999877655 578899999
Q ss_pred ccEEEEEecCCceeeecC------C-CCCHHHHHHHHHhhc
Q 010824 108 FPTIKILRNGGKTIQEYK------G-PREADGIVEYLKKQS 141 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~------g-~~~~~~l~~~i~~~~ 141 (500)
+|++++|++| +.+..|- | ......+..|++..-
T Consensus 212 lP~LliYkgG-eLIgNFv~va~qlgedffa~dle~FL~e~g 251 (273)
T KOG3171|consen 212 LPTLLIYKGG-ELIGNFVSVAEQLGEDFFAGDLESFLNEYG 251 (273)
T ss_pred CceEEEeeCC-chhHHHHHHHHHHhhhhhhhhHHHHHHHcC
Confidence 9999999976 6544321 2 345566666666544
No 401
>PRK10824 glutaredoxin-4; Provisional
Probab=92.77 E-value=0.27 Score=38.63 Aligned_cols=63 Identities=16% Similarity=0.301 Sum_probs=38.1
Q ss_pred hhhhhccCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCcccccEEEE
Q 010824 41 FSDTVSKHNFIVVEFYA----PWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEIRGFPTIKI 113 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~----~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i~~~P~~~~ 113 (500)
.++++++++. +|+--+ ||||+|.+....+... + +.+..+|...++. ..+.+.-|-+.+|.+++
T Consensus 8 v~~~I~~~~V-vvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~--i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 8 IQRQIAENPI-LLYMKGSPKLPSCGFSAQAVQALSAC-------G--ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred HHHHHhcCCE-EEEECCCCCCCCCchHHHHHHHHHHc-------C--CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 5666777764 333333 6999999998777654 2 2333445444332 23444456778999876
No 402
>PRK10824 glutaredoxin-4; Provisional
Probab=92.73 E-value=0.1 Score=41.04 Aligned_cols=55 Identities=18% Similarity=0.245 Sum_probs=34.3
Q ss_pred CCeEEEEEEC----CCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC----CCCcCcceEEEE
Q 010824 393 GKNVLLEFYA----PWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD----TFEVQGYPTVFF 455 (500)
Q Consensus 393 ~~~~~v~f~~----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~~~P~~~~ 455 (500)
+.+|+|+--+ |||++|+.....|.... +.+..+|+..++.... .-+-..+|.+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~--------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI 76 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG--------ERFAYVDILQNPDIRAELPKYANWPTFPQLWV 76 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcC--------CCceEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 4556655544 69999999988887762 3344567665533321 124468898854
No 403
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=92.10 E-value=2.4 Score=32.01 Aligned_cols=80 Identities=10% Similarity=0.163 Sum_probs=53.6
Q ss_pred hhhhhcCCCeE-EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCc-eE
Q 010824 386 QDMVFNSGKNV-LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGK-TV 463 (500)
Q Consensus 386 ~~~~~~~~~~~-~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~-~~ 463 (500)
...+.+-.++| ++.|.++. ..|.++...+++++..-. ++.+...+... ..|++.+..++.. -+
T Consensus 11 ~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gI 75 (94)
T cd02974 11 KAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE-----------RKPSFSINRPGEDTGI 75 (94)
T ss_pred HHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC-----------CCCEEEEecCCCcccE
Confidence 33333334444 55666655 999999999988887643 35553333211 3699999866533 58
Q ss_pred EecCCCCHHHHHHHHHh
Q 010824 464 PYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 464 ~~~g~~~~~~l~~~i~~ 480 (500)
+|.|.+.-.++.+||..
T Consensus 76 rF~GiP~GhEf~Slila 92 (94)
T cd02974 76 RFAGIPMGHEFTSLVLA 92 (94)
T ss_pred EEEecCCchhHHHHHHH
Confidence 99999999999999864
No 404
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=91.87 E-value=0.075 Score=48.56 Aligned_cols=89 Identities=19% Similarity=0.338 Sum_probs=68.8
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCH
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTK 471 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~ 471 (500)
...++-+.||+.||+..+..+|.+.-....+... -.++.=+...-+.+...+++.+.|++.+... .-..+|.|..+.
T Consensus 75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i--~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~-t~~~~~~~~r~l 151 (319)
T KOG2640|consen 75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSI--QHFAVEESQALPSVFSSYGIHSEPSNLMLNQ-TCPASYRGERDL 151 (319)
T ss_pred cCCcccccchhcccCcccccCcccchhhhhcccc--ccccHHHHhhcccchhccccccCCcceeecc-ccchhhcccccH
Confidence 4678999999999999999999998888777631 2222223333466777899999999999843 336789999999
Q ss_pred HHHHHHHHhhcC
Q 010824 472 EDIVDFIENNRD 483 (500)
Q Consensus 472 ~~l~~~i~~~~~ 483 (500)
.+|..|..+...
T Consensus 152 ~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 152 ASLVNFYTEITP 163 (319)
T ss_pred HHHHHHHHhhcc
Confidence 999999988764
No 405
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.75 E-value=1.1 Score=38.38 Aligned_cols=106 Identities=18% Similarity=0.344 Sum_probs=73.8
Q ss_pred ceEEcCccChhhhh---ccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccc
Q 010824 32 FVLTLDHSNFSDTV---SKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF 108 (500)
Q Consensus 32 ~v~~l~~~~~~~~~---~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~ 108 (500)
.|..++..+|..-+ .++-+|+|..|...-+-|.-+...+..++.+|.. ++|+.+-.+..- ..|.=...
T Consensus 92 ~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~cI-----pNYPe~nl 162 (240)
T KOG3170|consen 92 EVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTCI-----PNYPESNL 162 (240)
T ss_pred ceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEeccccccc-----CCCcccCC
Confidence 46778888877766 4566788899999999999999999999988754 889888654421 23444568
Q ss_pred cEEEEEecCCceeeecC------CC-CCHHHHHHHHHhhcCCCcccc
Q 010824 109 PTIKILRNGGKTIQEYK------GP-READGIVEYLKKQSGPASAEI 148 (500)
Q Consensus 109 P~~~~~~~~~~~~~~~~------g~-~~~~~l~~~i~~~~~~~~~~i 148 (500)
||+++|..| .....+- |. .+.+++..++.+ .++.++..
T Consensus 163 PTl~VY~~G-~lk~q~igll~lgG~n~t~ed~e~~L~q-aga~l~d~ 207 (240)
T KOG3170|consen 163 PTLLVYHHG-ALKKQMIGLLELGGMNLTMEDVEDFLVQ-AGAALTDG 207 (240)
T ss_pred CeEEEeecc-hHHhheehhhhhcCCcCCHHHHHHHHHh-cccccccc
Confidence 999999986 4444443 34 455666555544 44445544
No 406
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=91.68 E-value=0.33 Score=48.06 Aligned_cols=51 Identities=10% Similarity=0.250 Sum_probs=37.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC------------CCCcCcceEEEE
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD------------TFEVQGYPTVFF 455 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~------------~~~i~~~P~~~~ 455 (500)
++.|+.+|||+|+.....|.+. ++.|..+|+++++.-.+ ..+..++|.+.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999888887774 47777888886542111 135678999954
No 407
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=91.43 E-value=3.9 Score=31.20 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=74.3
Q ss_pred EEeccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCC----CCCcC-cceE
Q 010824 379 VLVADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGD----TFEVQ-GYPT 452 (500)
Q Consensus 379 ~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~i~-~~P~ 452 (500)
+++.+++-.+=.+ -+...++-|-.+-.+.-.++.+.+.++|....++.++.|+-||-+.-+.... .|+|. +-|.
T Consensus 5 kl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~Pq 84 (120)
T cd03074 5 KLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQ 84 (120)
T ss_pred hccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCc
Confidence 3444444443322 2577888899999999999999999999999887899999999998766642 23432 3588
Q ss_pred EEEEcCCCc-eE--EecCC---CCHHHHHHHHHhh
Q 010824 453 VFFRSASGK-TV--PYEGD---RTKEDIVDFIENN 481 (500)
Q Consensus 453 ~~~~~~~~~-~~--~~~g~---~~~~~l~~~i~~~ 481 (500)
|=+++.... .+ ...+. .+.++|.+||.+.
T Consensus 85 IGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 85 IGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred eeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence 888864433 33 33333 7899999999875
No 408
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.12 E-value=0.76 Score=38.78 Aligned_cols=44 Identities=20% Similarity=0.351 Sum_probs=34.4
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~ 435 (500)
+.+.+++.|.+..|++|+.+.+.+.++..++-+..++.+...+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678999999999999999999999888872223677777766
No 409
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.51 E-value=0.56 Score=40.37 Aligned_cols=43 Identities=33% Similarity=0.593 Sum_probs=34.6
Q ss_pred CCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCC
Q 010824 392 SGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDAT 436 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~ 436 (500)
+.+..++.|++..|++|+.+.+.+..+...+.+ ++.+..+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK--DVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC--CceEEEcCCc
Confidence 467889999999999999999999999888754 4666555544
No 410
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.47 E-value=0.93 Score=38.10 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=41.2
Q ss_pred cCCeEEEEEE-CCCChhhhhh-hHHHHHHHHHhcCCCCCeEEEEEecChhh-hHHHHHhcCc
Q 010824 47 KHNFIVVEFY-APWCGHCKKL-APEYEKAASELSSHDPPVVLAKVDANEEA-NKELASQYEI 105 (500)
Q Consensus 47 ~~~~~lv~f~-~~~c~~C~~~-~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~i 105 (500)
.++++++.|| +.||+.|... .+.+.+..+++...+-. .+..|.++... ..++++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~-~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVD-EVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCC-EEEEEECCCHHHHHHHHHhhCC
Confidence 4456666666 7899999998 99999999999865521 35556555433 3347888877
No 411
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=90.47 E-value=2.3 Score=40.81 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=71.7
Q ss_pred Chhhhh---ccCCeEEEEEECCCChhhhhhh-HHHHH-HHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEE
Q 010824 40 NFSDTV---SKHNFIVVEFYAPWCGHCKKLA-PEYEK-AASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKIL 114 (500)
Q Consensus 40 ~~~~~~---~~~~~~lv~f~~~~c~~C~~~~-~~~~~-~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~ 114 (500)
++..+| +.++.+||-|-+......+.+. -.|.. .....-. ..++...|+........+..-|.+..+|+++|+
T Consensus 7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls--~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffI 84 (506)
T KOG2507|consen 7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS--KYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFI 84 (506)
T ss_pred chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh--cceEEEEeccCchhhhhhhhhcccccccceeee
Confidence 444454 4556777777777788877776 23333 2222221 126667777666655568888999999999999
Q ss_pred ecCCceeeecCCCCCHHHHHHHHHhhc
Q 010824 115 RNGGKTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 115 ~~~~~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
...|..+....|..+.++|..-|.+..
T Consensus 85 g~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 85 GFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cCCCceeEEeeccccHHHHHHHHHHHH
Confidence 998999999999999999998888754
No 412
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.59 E-value=0.98 Score=44.73 Aligned_cols=53 Identities=17% Similarity=0.394 Sum_probs=36.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhH-HHHHh---------cCcccccEEEE
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANK-ELASQ---------YEIRGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~-~~~~~---------~~i~~~P~~~~ 113 (500)
++.|..+|||+|++....+.+. | |.+..+|+++++.. ++.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-------g--i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-------D--IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C--CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6789999999999987666542 3 67778888765531 12122 36778999966
No 413
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=88.07 E-value=0.86 Score=35.11 Aligned_cols=54 Identities=15% Similarity=0.291 Sum_probs=32.7
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC-----CCCCcCcceEEEE
Q 010824 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG-----DTFEVQGYPTVFF 455 (500)
Q Consensus 396 ~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-----~~~~i~~~P~~~~ 455 (500)
-+|.|.-+||++|..+...|.. ++. ...++.+|-..+..-- +.-+.+.+|.+++
T Consensus 15 ~VVifSKs~C~~c~~~k~ll~~----~~v--~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 15 PVVIFSKSSCPYCHRAKELLSD----LGV--NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred CEEEEECCcCchHHHHHHHHHh----CCC--CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3456888999999987777777 332 4566555555332111 1122348898754
No 414
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=16 Score=34.73 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=102.0
Q ss_pred CceEEEEEeCCCCCchHHHHHHHHHHHhhcCceeEEEEEcccchhhHHhhcCCCCCCCceEEEEeCCC-C--ccCCCCCC
Q 010824 268 NAKAMLFMNFSSEGTEPIQSKYREVAEQYKGQGISFLLGDLEASQGAFQYFGLQESQVPLIVIQTNDG-Q--KYLKPNLD 344 (500)
Q Consensus 268 ~~~~~l~~~~~~~~~~~~~~~l~~va~~~~~~~~~f~~~d~~~~~~~~~~~gi~~~~~P~i~i~~~~~-~--~y~~~~~~ 344 (500)
.|+.+...-.+.+...+..+.+.++|.-. ++ +.+-..+.. ...|.+.+-++.. . +| -|.+-
T Consensus 19 ~~i~l~asldds~~s~~~~~ll~eia~~S-~k-is~~~~~~~-------------~RkpSF~i~r~g~~~gv~F-AglPl 82 (520)
T COG3634 19 QPIELVASLDDSEKSKEIKELLDEIASLS-DK-ISLEEDSDL-------------VRKPSFSINRPGEDQGVRF-AGLPL 82 (520)
T ss_pred CCeEEEEecCcccccHHHHHHHHHHHhhc-cc-eeeeecCcc-------------ccCCceeecCCCcccceEE-ecCcc
Confidence 44554444445666688888888888766 33 554443211 2667777777764 2 33 23333
Q ss_pred hhhHHHHHHHHhc--CCCCCccccCCCCCCCCCCeEEEeccchhhhhhc-CCCeEEEEEECCCChhHhhhhHHHHHHHHH
Q 010824 345 ADQIAPWVKEYKE--GKVPPFRKSEPIPEENNEPVKVLVADSLQDMVFN-SGKNVLLEFYAPWCGHCKKLAPILDEVAVS 421 (500)
Q Consensus 345 ~~~i~~fi~~~~~--G~l~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~ 421 (500)
-..+-.++-.+++ |..+ ++. +++.+.+.+ ++.--|=-|++-.|..|-.....+..++-.
T Consensus 83 GHEftSlVLaLlqv~G~pp-----------------k~~-q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvl 144 (520)
T COG3634 83 GHEFTSLVLALLQVGGHPP-----------------KED-QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVL 144 (520)
T ss_pred cchHHHHHHHHHHhcCCCC-----------------chh-HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhc
Confidence 3334444444332 3311 222 223333323 455667778888999997777776666543
Q ss_pred cCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHh
Q 010824 422 YQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIEN 480 (500)
Q Consensus 422 ~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 480 (500)
+ +++.-..||-....+..+.-+|.++|++++- |.. --.|.++.++|..-|.-
T Consensus 145 -N--p~I~H~~IdGa~Fq~Evear~IMaVPtvfln--Ge~--fg~GRmtleeilaki~~ 196 (520)
T COG3634 145 -N--PRIKHTAIDGALFQDEVEARNIMAVPTVFLN--GEE--FGQGRMTLEEILAKIDT 196 (520)
T ss_pred -C--CCceeEEecchhhHhHHHhccceecceEEEc--chh--hcccceeHHHHHHHhcC
Confidence 2 3688888888776555555689999998764 321 11366888888877754
No 415
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=86.41 E-value=17 Score=32.79 Aligned_cols=105 Identities=15% Similarity=0.268 Sum_probs=67.5
Q ss_pred CccChhhhhccCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhcCCCCCe---EEEEEecChhh-----------------
Q 010824 37 DHSNFSDTVSKHNFIVVEFYAPWCG-HCKKLAPEYEKAASELSSHDPPV---VLAKVDANEEA----------------- 95 (500)
Q Consensus 37 ~~~~~~~~~~~~~~~lv~f~~~~c~-~C~~~~~~~~~~~~~~~~~~~~v---~~~~vd~~~~~----------------- 95 (500)
+.+.+.+.--.++.++++|-=+.|| -|=.....+.++..++..+...- .|..||-..+.
T Consensus 128 ~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllG 207 (280)
T KOG2792|consen 128 DGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLG 207 (280)
T ss_pred CCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhc
Confidence 3333444444788999999999998 78888888999998887762222 56677764433
Q ss_pred -------hHHHHHhcCccccc---------------EEEEEecCCceeeecCC-CCCHHHHHHHHHhhcC
Q 010824 96 -------NKELASQYEIRGFP---------------TIKILRNGGKTIQEYKG-PREADGIVEYLKKQSG 142 (500)
Q Consensus 96 -------~~~~~~~~~i~~~P---------------~~~~~~~~~~~~~~~~g-~~~~~~l~~~i~~~~~ 142 (500)
-..+|++|.|-.-+ .+++.++.|+. ..|.| .++.+++.+-|.+.+.
T Consensus 208 LTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~F-vd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 208 LTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEF-VDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred ccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcce-ehhhcccCCHHHHHHHHHHHHH
Confidence 11366666543222 23444566554 45555 5888888888876653
No 416
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=86.16 E-value=16 Score=29.80 Aligned_cols=94 Identities=13% Similarity=0.162 Sum_probs=63.3
Q ss_pred hccCCeEEEEEECCCChhhhhhhHHH---HHHHHHhcCCCCCeEEEEEecChhhh----------------HHHHHhcCc
Q 010824 45 VSKHNFIVVEFYAPWCGHCKKLAPEY---EKAASELSSHDPPVVLAKVDANEEAN----------------KELASQYEI 105 (500)
Q Consensus 45 ~~~~~~~lv~f~~~~c~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~----------------~~~~~~~~i 105 (500)
.++.|+.+|+-+++.-+.+..+-... +.+.+-++.+ +.+-.-|...+.. ....+.++.
T Consensus 18 ~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~n---fv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~ 94 (136)
T cd02990 18 ARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQN---FITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT 94 (136)
T ss_pred hhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcC---EEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCc
Confidence 55788999999988664333333222 2233344433 8888888777542 124556788
Q ss_pred ccccEEEEEecCC---ceeeecCCCCCHHHHHHHHHhhc
Q 010824 106 RGFPTIKILRNGG---KTIQEYKGPREADGIVEYLKKQS 141 (500)
Q Consensus 106 ~~~P~~~~~~~~~---~~~~~~~g~~~~~~l~~~i~~~~ 141 (500)
..+|.+.+.-... ..+.+..|..+.+++++-+...+
T Consensus 95 ~~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 95 DQLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9999999996432 45678999999999998887654
No 417
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.07 E-value=8 Score=33.57 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=24.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhc
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELS 78 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~ 78 (500)
.+.+|+...||+|-...+.+.++.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~ 28 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYP 28 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence 3678999999999999999999999983
No 418
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.06 E-value=1.2 Score=45.81 Aligned_cols=88 Identities=22% Similarity=0.334 Sum_probs=66.9
Q ss_pred ccCceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhH-HH--HHHHHHhcCCCCCeEEEEEecChhhhHHHHHhc--
Q 010824 29 SKEFVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAP-EY--EKAASELSSHDPPVVLAKVDANEEANKELASQY-- 103 (500)
Q Consensus 29 ~~~~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~-~~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~-- 103 (500)
.+-.....+++.|..+..+++|+|+-.-..||..|+.+.. .| ..+|+.++.. ++-++||.+.=++ +-+.|
T Consensus 24 nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~---FV~IKVDREERPD--vD~~Ym~ 98 (667)
T COG1331 24 NPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNEN---FVPVKVDREERPD--VDSLYMN 98 (667)
T ss_pred CCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhC---ceeeeEChhhccC--HHHHHHH
Confidence 3445567899999999999999999999999999998874 22 3566677665 7777777665444 55544
Q ss_pred ------CcccccEEEEEecCCcee
Q 010824 104 ------EIRGFPTIKILRNGGKTI 121 (500)
Q Consensus 104 ------~i~~~P~~~~~~~~~~~~ 121 (500)
|--|.|--+|..++|+..
T Consensus 99 ~~q~~tG~GGWPLtVfLTPd~kPF 122 (667)
T COG1331 99 ASQAITGQGGWPLTVFLTPDGKPF 122 (667)
T ss_pred HHHHhccCCCCceeEEECCCCcee
Confidence 356899999999987764
No 419
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.29 E-value=7.4 Score=35.45 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=26.1
Q ss_pred HHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 99 LASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 99 ~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
++.++|+.++|++++ +++ .+.|....+.|.+.|...
T Consensus 207 ~a~~~gv~gTPt~~v---~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 207 LAQQLGVNGTPTFIV---NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHhcCCCcCCeEEE---CCe---eecCCCCHHHHHHHHHHh
Confidence 455678999999877 222 778888888888777653
No 420
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=84.68 E-value=5.9 Score=28.07 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=51.2
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecC
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNG 117 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~ 117 (500)
.+..|-+..-+.+++....+.++.+.+- ++.+.+-.||..+++. +++.++|-.+||++=..++
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l--~~~~~LeVIDv~~~P~--lAe~~~ivAtPtLvk~~P~ 65 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL--GGPYELEVIDVLKQPQ--LAEEDKIVATPTLVKVLPP 65 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc--CCcEEEEEEEcccCHh--HHhhCCEEEechhhhcCCC
Confidence 4556667777888888888888888876 3459999999999999 9999999999998655443
No 421
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=84.24 E-value=4.5 Score=29.85 Aligned_cols=75 Identities=12% Similarity=0.131 Sum_probs=59.7
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCC
Q 010824 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPR 128 (500)
Q Consensus 49 ~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~ 128 (500)
.+++=.|.+..-+.+++....+.++.+..-. | .+.+-.+|..+++. +++.++|-.+||++=-.++ ...+.-|..
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g-~y~LeVIDv~~qP~--lAE~~~IvATPtLIK~~P~--P~rriiGdl 76 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-G-VYALKVIDVLKNPQ--LAEEDKILATPTLSKILPP--PVRKIIGDL 76 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-C-ceEEEEEEcccCHh--HHhHCCEEEecHHhhcCCC--Ccceeeccc
Confidence 3556677788888999998999888776654 2 38999999999999 9999999999998766655 556777765
Q ss_pred C
Q 010824 129 E 129 (500)
Q Consensus 129 ~ 129 (500)
+
T Consensus 77 s 77 (87)
T TIGR02654 77 S 77 (87)
T ss_pred c
Confidence 3
No 422
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=83.52 E-value=4 Score=36.43 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=47.1
Q ss_pred CCCeEEEeccchhhhh--hcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEE
Q 010824 374 NEPVKVLVADSLQDMV--FNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKF 433 (500)
Q Consensus 374 ~~~~~~l~~~~~~~~~--~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~i 433 (500)
+.++..++++.-.++. ...+++.++.|.+-.||+-+.-.+.+++++..+.+..++.++.|
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 4668888888844443 26799999999999999999999999999999976444555443
No 423
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.43 E-value=1.7 Score=38.49 Aligned_cols=41 Identities=24% Similarity=0.632 Sum_probs=31.1
Q ss_pred CCeEEEEEECCCChhHhhhhHHH---HHHHHHcCCCCceEEEEEeC
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPIL---DEVAVSYQNDADVVIAKFDA 435 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~id~ 435 (500)
+++.+|.|++-.|++|..+.+.+ ..+.+.+.+ ++.+.++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~--~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE--GTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC--CCeEEEecc
Confidence 35668999999999999999876 777777765 455555444
No 424
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=83.39 E-value=1.5 Score=33.99 Aligned_cols=77 Identities=12% Similarity=0.187 Sum_probs=46.0
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC----CCcCcceEEEEEcCCCceEE-e----cCC
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT----FEVQGYPTVFFRSASGKTVP-Y----EGD 468 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~i~~~P~~~~~~~~~~~~~-~----~g~ 468 (500)
..|+.++|+.|+.....|++. ++.|-.+|+.+++..... .+..+.+.--++...+...+ . ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~ 73 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH--------GIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDE 73 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccC
Confidence 578999999999988877764 466777888765444221 11122223333333322111 1 245
Q ss_pred CCHHHHHHHHHhhc
Q 010824 469 RTKEDIVDFIENNR 482 (500)
Q Consensus 469 ~~~~~l~~~i~~~~ 482 (500)
.+.+++.++|.++-
T Consensus 74 ls~~e~~~~l~~~p 87 (105)
T cd02977 74 LSDEEALELMAEHP 87 (105)
T ss_pred CCHHHHHHHHHhCc
Confidence 78899999888753
No 425
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=83.26 E-value=6.4 Score=31.67 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=48.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccc---cEEEEEecCCceeeecCCC
Q 010824 51 IVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGF---PTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 51 ~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~---P~~~~~~~~~~~~~~~~g~ 127 (500)
-++.+++|.|+=|......++ .+| +.+..+..++-.. +-+++||..- -+..+.+ | . -..|-
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk-------~~G--f~Vk~~~~~d~~a--lK~~~gIp~e~~SCHT~VI~-G-y---~vEGH 90 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMK-------ANG--FEVKVVETDDFLA--LKRRLGIPYEMQSCHTAVIN-G-Y---YVEGH 90 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHH-------hCC--cEEEEeecCcHHH--HHHhcCCChhhccccEEEEc-C-E---EEecc
Confidence 478889999999977654443 334 5666666656555 8888988631 2222322 2 2 45677
Q ss_pred CCHHHHHHHHHhhc
Q 010824 128 READGIVEYLKKQS 141 (500)
Q Consensus 128 ~~~~~l~~~i~~~~ 141 (500)
.-.+.+.+++.+.-
T Consensus 91 VPa~aI~~ll~~~p 104 (149)
T COG3019 91 VPAEAIARLLAEKP 104 (149)
T ss_pred CCHHHHHHHHhCCC
Confidence 88888888887643
No 426
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=83.24 E-value=16 Score=27.60 Aligned_cols=75 Identities=16% Similarity=0.144 Sum_probs=50.8
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 126 (500)
++++.++.|..+. ..|+.....++.+++. .++|.+-..+.. ...|++.+.+++.....+|.|
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~l----SdkI~~~~~~~~-------------~~~P~~~i~~~~~~~gIrF~G 79 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASL----SDKITLEEDNDD-------------ERKPSFSINRPGEDTGIRFAG 79 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHh----CCceEEEEecCC-------------CCCCEEEEecCCCcccEEEEe
Confidence 5667777887765 8998888777777755 233665433321 036999998775233468999
Q ss_pred CCCHHHHHHHHHh
Q 010824 127 PREADGIVEYLKK 139 (500)
Q Consensus 127 ~~~~~~l~~~i~~ 139 (500)
--.-.++..||..
T Consensus 80 iP~GhEf~Slila 92 (94)
T cd02974 80 IPMGHEFTSLVLA 92 (94)
T ss_pred cCCchhHHHHHHH
Confidence 8888888777764
No 427
>PRK09301 circadian clock protein KaiB; Provisional
Probab=82.39 E-value=5.5 Score=30.38 Aligned_cols=76 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCC
Q 010824 48 HNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGP 127 (500)
Q Consensus 48 ~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~ 127 (500)
+.+++=.|.+..-+.+++....+.++.+.+-. +.+.+-.||..+++. +++.++|-.+||++=-.+. ...+.-|.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~--g~y~LeVIDv~~qPe--lAE~~~IvATPTLIK~~P~--P~rriiGD 78 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK--GVYALKVIDVLKNPQ--LAEEDKILATPTLAKILPP--PVRKIIGD 78 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC--CceEEEEEEcccCHh--HHhHCCeEEecHHhhcCCC--Ccceeecc
Confidence 35677778888889999999999988776654 238999999999999 9999999999998766655 55678887
Q ss_pred CC
Q 010824 128 RE 129 (500)
Q Consensus 128 ~~ 129 (500)
.+
T Consensus 79 ls 80 (103)
T PRK09301 79 LS 80 (103)
T ss_pred cc
Confidence 53
No 428
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=82.37 E-value=9.2 Score=34.65 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=44.5
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEE
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTI 111 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~ 111 (500)
....++..+ +...||+.+++..+.|||.|-..+-.+-.+-.++..- .+....-|- . -.-..+|++
T Consensus 45 ~~~kvsn~d---~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~--~l~~~~S~~---~-------d~~pn~Ptl 109 (249)
T PF06053_consen 45 NFFKVSNQD---LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF--SLEYHYSDP---Y-------DNYPNTPTL 109 (249)
T ss_pred ceeeecCcc---cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe--eeEEeecCc---c-------cCCCCCCeE
Confidence 344555443 4578999999999999999988776666666555321 122222221 1 123468999
Q ss_pred EEEecC
Q 010824 112 KILRNG 117 (500)
Q Consensus 112 ~~~~~~ 117 (500)
.|....
T Consensus 110 ~F~~~~ 115 (249)
T PF06053_consen 110 IFNNYT 115 (249)
T ss_pred EEecCc
Confidence 998763
No 429
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.84 E-value=2.5 Score=32.67 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=28.8
Q ss_pred CeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC
Q 010824 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435 (500)
Q Consensus 394 ~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~ 435 (500)
|.+++.|.-|.|+-|+-....+.++... .-+.+||+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc------ccEEEEEe
Confidence 5789999999999999999998777655 44556665
No 430
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=81.28 E-value=7.3 Score=27.97 Aligned_cols=73 Identities=14% Similarity=0.111 Sum_probs=41.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh--hhHHHHHhcCcccccEEEEEecCCceeeecCCCCC
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE--ANKELASQYEIRGFPTIKILRNGGKTIQEYKGPRE 129 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~ 129 (500)
+..++.++|+.|.+.+-.+... + +.+-.+++... ...++.+..+-..+|++.. .++|.. -.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-------g--i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~------l~e 65 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-------E--LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQ------MFE 65 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-------C--CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeE------EEc
Confidence 3567778999998876544432 2 33333444332 2234655566678899853 223222 356
Q ss_pred HHHHHHHHHhh
Q 010824 130 ADGIVEYLKKQ 140 (500)
Q Consensus 130 ~~~l~~~i~~~ 140 (500)
...|.+|+.+.
T Consensus 66 s~~I~~yL~~~ 76 (77)
T cd03041 66 SADIVKYLFKT 76 (77)
T ss_pred HHHHHHHHHHh
Confidence 67777777653
No 431
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=81.12 E-value=1.8 Score=35.85 Aligned_cols=51 Identities=16% Similarity=0.292 Sum_probs=34.0
Q ss_pred EEEEECC------CChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCC----CCCC----cCcceEEEE
Q 010824 397 LLEFYAP------WCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPG----DTFE----VQGYPTVFF 455 (500)
Q Consensus 397 ~v~f~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~----i~~~P~~~~ 455 (500)
++.|+++ +|++|+.+...|+.. ++.|-.+|++.+.... +... -..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566666 899999988888765 4777788988654322 1122 257888754
No 432
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=80.92 E-value=1.2 Score=34.53 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=41.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEEEecCCceeeec----CC
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKILRNGGKTIQEY----KG 126 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~----~g 126 (500)
..|+.++|+.|++....+++. + +.+-.+|...++ ..++.+-.+-.+.+.--+++..+..+... ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-------~--i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~ 72 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-------G--IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKD 72 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------C--CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCcccc
Confidence 568899999999986555542 3 445555554422 22244433333333333444433322211 23
Q ss_pred CCCHHHHHHHHHh
Q 010824 127 PREADGIVEYLKK 139 (500)
Q Consensus 127 ~~~~~~l~~~i~~ 139 (500)
..+.+++.+++.+
T Consensus 73 ~ls~~e~~~~l~~ 85 (105)
T cd02977 73 ELSDEEALELMAE 85 (105)
T ss_pred CCCHHHHHHHHHh
Confidence 4566777777765
No 433
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=79.28 E-value=5.3 Score=28.32 Aligned_cols=61 Identities=11% Similarity=0.050 Sum_probs=49.0
Q ss_pred EEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEc
Q 010824 396 VLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRS 457 (500)
Q Consensus 396 ~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~ 457 (500)
.+..|-+...+..+.....+.++..... ...+.+--+|+.+++...+.+++..+|+++=..
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l-~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELL-GGPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhc-CCcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 4556666677888888888888877764 237888889999999999999999999976553
No 434
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=77.50 E-value=5.5 Score=35.33 Aligned_cols=63 Identities=16% Similarity=0.177 Sum_probs=47.4
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCC-CCeEEEEEecChhhh
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHD-PPVVLAKVDANEEAN 96 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~-~~v~~~~vd~~~~~~ 96 (500)
.+.+++.+--.. ..|.++||.+-..+|..|..-...++.+..+|...| ++|.|+.||--....
T Consensus 12 ~W~i~~~~pm~~-~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s 75 (238)
T PF04592_consen 12 PWKIGGQDPMLN-SLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHS 75 (238)
T ss_pred CceECCchHhhh-cCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcch
Confidence 344555332222 366788899988899999999999999999997664 589999999765544
No 435
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=77.26 E-value=15 Score=35.58 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=59.9
Q ss_pred cCCCeEEEEEECCCChhHhhhhH-HHHH-H-HHHcCCCCceEEEEEeCCCC--CCCCCCCCcCcceEEEEEcCCCceE-E
Q 010824 391 NSGKNVLLEFYAPWCGHCKKLAP-ILDE-V-AVSYQNDADVVIAKFDATAN--DIPGDTFEVQGYPTVFFRSASGKTV-P 464 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~~c~~~~~-~~~~-~-~~~~~~~~~~~~~~id~~~~--~~~~~~~~i~~~P~~~~~~~~~~~~-~ 464 (500)
..++.+||.|.+......+.+.. .|.. . +..+.. .+.-++|+.... ..+...|.+..+|++++++..|.+. +
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~--~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLev 93 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK--YFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEV 93 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc--ceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEE
Confidence 45778888888887777666652 2222 2 222222 466666666543 3345668899999999999889866 6
Q ss_pred ecCCCCHHHHHHHHHh
Q 010824 465 YEGDRTKEDIVDFIEN 480 (500)
Q Consensus 465 ~~g~~~~~~l~~~i~~ 480 (500)
..|..++++|..-|.+
T Consensus 94 itg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 94 ITGFVTADELASSIEK 109 (506)
T ss_pred eeccccHHHHHHHHHH
Confidence 6788888888776665
No 436
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=76.72 E-value=3.5 Score=32.31 Aligned_cols=76 Identities=22% Similarity=0.377 Sum_probs=47.1
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC----CCcCcceEEEEEcCCCceEE---ec---C
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT----FEVQGYPTVFFRSASGKTVP---YE---G 467 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~i~~~P~~~~~~~~~~~~~---~~---g 467 (500)
..|+.++|+.|+.....|.+- ++.|-.+|+..++..... .+..+.|..-++...+...+ .. .
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 73 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH--------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLP 73 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc--------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccc
Confidence 478999999999888777663 577777888776544321 22234555555554443221 11 1
Q ss_pred CCCHHHHHHHHHhh
Q 010824 468 DRTKEDIVDFIENN 481 (500)
Q Consensus 468 ~~~~~~l~~~i~~~ 481 (500)
..+.+++++.|.++
T Consensus 74 ~~s~~e~~~~l~~~ 87 (111)
T cd03036 74 SLSEEEALELLSSD 87 (111)
T ss_pred cCCHHHHHHHHHhC
Confidence 34677788888765
No 437
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.42 E-value=11 Score=26.94 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=41.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec-CCceeeecCCCCCH
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN-GGKTIQEYKGPREA 130 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~-~~~~~~~~~g~~~~ 130 (500)
+..|+.+.|+.|++.+-.+.. + +-.+....+|. ....++ +..+...+|++..=.. +|.. -.+.
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~-----~--gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~------l~eS 65 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDY-----H--GIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQ------LVDS 65 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHH-----C--CCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccE------EEcH
Confidence 456778999999998744432 2 32233333332 222224 3455667898865321 1221 3567
Q ss_pred HHHHHHHHhhc
Q 010824 131 DGIVEYLKKQS 141 (500)
Q Consensus 131 ~~l~~~i~~~~ 141 (500)
..|.+|+.+.+
T Consensus 66 ~~I~~yL~~~~ 76 (77)
T cd03040 66 SVIISTLKTYL 76 (77)
T ss_pred HHHHHHHHHHc
Confidence 77888887765
No 438
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=75.88 E-value=22 Score=33.11 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=87.1
Q ss_pred HHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHh----hhhccCCeEEEEEecCC
Q 010824 97 KELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDAS----SFIGEKKVVIIGVFPNF 172 (500)
Q Consensus 97 ~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~----~~~~~~~~~~i~~~~~~ 172 (500)
.+.+++++|.-+|--+.+++ +.+.. .-..+.+++.+.+.+.-..+.+--.+..++. ++.++...+++....+.
T Consensus 13 ~~~~~~~~I~vvPl~I~~~~--~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~ 89 (275)
T TIGR00762 13 PELIEEYGITVVPLTVIIDG--KTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSSG 89 (275)
T ss_pred HHHHHHcCCEEEEEEEEECC--EEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 34889999999999988873 33222 2248899999999763322222222555553 33445555666667777
Q ss_pred CchhHHHHHHHHHHhcCCceEEEeecccccCCCCCCCCCCeEEEeccCCCcccccCCCCHHHHHHHHHHccCCcEEEeCC
Q 010824 173 SGEEFENYTALAEKLRSDYEFGHTQNAKLLPRGESSVTGPVVRLFKPFDELFVDFKDFKVDALEKFVEESSIPIVTVFNS 252 (500)
Q Consensus 173 ~~~~~~~f~~~a~~~~~~~~f~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~p~~~~~~~ 252 (500)
-+..+..+..+++.+.+ ..+.++.+...... . ..++.. -........+.+++.+|++...-.....+..
T Consensus 90 lSgty~~a~~aa~~~~~-~~i~ViDS~~~s~~--~-----g~~v~~---a~~~~~~G~s~~eI~~~l~~~~~~~~~~f~v 158 (275)
T TIGR00762 90 LSGTYQSARQAAEMVDE-AKVTVIDSKSASMG--L-----GLLVLE---AAKLAEEGKSLEEILAKLEELRERTKLYFVV 158 (275)
T ss_pred hhHHHHHHHHHHhhCCC-CCEEEECChHHHHH--H-----HHHHHH---HHHHHHcCCCHHHHHHHHHHHHhhcEEEEEE
Confidence 78999999988877743 23444443222111 0 000000 0001233457888999988766555555555
Q ss_pred CCCCccchhhhhcCCC
Q 010824 253 DANNHPFVIKFFNSPN 268 (500)
Q Consensus 253 ~~~~~~~~~~~~~~~~ 268 (500)
.++..+..+++
T Consensus 159 -----~~L~~L~~gGR 169 (275)
T TIGR00762 159 -----DTLEYLVKGGR 169 (275)
T ss_pred -----CcHHHHHhcCC
Confidence 34444444443
No 439
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=75.62 E-value=8.1 Score=30.56 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=40.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HH---HHHhcCcccccEEEEEecCCceeeecC--
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KE---LASQYEIRGFPTIKILRNGGKTIQEYK-- 125 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~---~~~~~~i~~~P~~~~~~~~~~~~~~~~-- 125 (500)
..|+.++|+.|++....+.+ .+ +.+-.+|...++. .+ +..+.|. ..--+++..|..+....
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~el~~l~~~~~~---~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NG--IEYQFIDIGEDGPTREELLDILSLLED---GIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cC--CceEEEecCCChhhHHHHHHHHHHcCC---CHHHheeCCCcchhhCCch
Confidence 46789999999998765554 12 5566666655332 22 3334442 22224454434333221
Q ss_pred ---CCCCHHHHHHHHHh
Q 010824 126 ---GPREADGIVEYLKK 139 (500)
Q Consensus 126 ---g~~~~~~l~~~i~~ 139 (500)
...+.+++.+++.+
T Consensus 70 ~~~~~ls~~e~~~~i~~ 86 (117)
T TIGR01617 70 NTFLDLSDKEALELLAE 86 (117)
T ss_pred hhcccCCHHHHHHHHHh
Confidence 23555666666665
No 440
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=75.23 E-value=4.2 Score=32.99 Aligned_cols=36 Identities=22% Similarity=0.463 Sum_probs=25.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ 440 (500)
+..|+.++|+.|+.....|.+. ++.|-.+|+..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~--------gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH--------DIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCcEEeeccCChh
Confidence 4578999999999887766654 46666677765443
No 441
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.87 E-value=7.2 Score=27.41 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=34.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEE
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~ 113 (500)
+.|+.++|+.|.+..-.+... |-.+....+|.... ..++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNK-PAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEE
Confidence 467789999998886444432 32355666665432 234766677788999953
No 442
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=74.11 E-value=7.2 Score=32.30 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=34.7
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhh--HHHHHhcCc----ccccEEEE
Q 010824 52 VVEFYAP------WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEAN--KELASQYEI----RGFPTIKI 113 (500)
Q Consensus 52 lv~f~~~------~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~--~~~~~~~~i----~~~P~~~~ 113 (500)
++.|+++ +|++|++....+... + |.+-.+|.+.++. .++.+..+- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~--V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------R--VKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-------C--CcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3455566 899999887766642 2 6677788765543 235555554 67899876
No 443
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=7.8 Score=40.15 Aligned_cols=101 Identities=18% Similarity=0.272 Sum_probs=72.3
Q ss_pred EEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHH-H--HHHHHHcCCCCceEEEEEeCCCCCCCCCCCC--------
Q 010824 378 KVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPI-L--DEVAVSYQNDADVVIAKFDATANDIPGDTFE-------- 446 (500)
Q Consensus 378 ~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~-------- 446 (500)
...+.+.|.+.. ..++++|+-+..+||.-|+.|... | .++|..++. ++.-++||-++-+++.+.|.
T Consensus 29 ~pW~~eAf~~A~-~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 29 YPWGEEAFAKAK-EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccCHHHHHHHH-HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 456778888765 779999999999999999988763 2 346666665 68889999999888876444
Q ss_pred cCcceEEEEEcCCCceE---EecC------CCCHHHHHHHHHhh
Q 010824 447 VQGYPTVFFRSASGKTV---PYEG------DRTKEDIVDFIENN 481 (500)
Q Consensus 447 i~~~P~~~~~~~~~~~~---~~~g------~~~~~~l~~~i~~~ 481 (500)
--+-|-.++.-+++++. .|.. .....+|..-|.+.
T Consensus 106 ~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~ 149 (667)
T COG1331 106 QGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRET 149 (667)
T ss_pred CCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHH
Confidence 34789888887777744 4542 23455555555443
No 444
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=73.34 E-value=17 Score=28.30 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=48.2
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE 94 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~ 94 (500)
+..++.+.+..---+++++||.=.|+.|+.-. ....++++.++++..+ +.+...-|.+.
T Consensus 6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcnqF 64 (108)
T PF00255_consen 6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCNQF 64 (108)
T ss_dssp EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBSTT
T ss_pred eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehHHh
Confidence 45567777777777899998888899999888 6689999999998655 88888888874
No 445
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.30 E-value=4.9 Score=31.12 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=27.1
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP 441 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ 441 (500)
.+|+.|+|+.|+.....|.+- ++.|-.+|+.+++..
T Consensus 2 ~iy~~~~C~~crka~~~L~~~--------~i~~~~~di~~~p~s 37 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR--------GVAYTFHDYRKDGLD 37 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCCeEEEecccCCCC
Confidence 578999999999888777654 466667787766544
No 446
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=72.69 E-value=5 Score=31.42 Aligned_cols=78 Identities=27% Similarity=0.430 Sum_probs=41.5
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEEEecCCceeeec--CC--
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKILRNGGKTIQEY--KG-- 126 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~--~g-- 126 (500)
..|+.++|+.|++...-+++ .+ +.|-.+|...++ ..++.+-.+..+.|.--+++..|..+... .+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~--i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 72 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HG--VDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKL 72 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cC--CceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccccc
Confidence 46789999999998755543 13 556666654433 22244433433445555566543322211 11
Q ss_pred -CCCHHHHHHHHHh
Q 010824 127 -PREADGIVEYLKK 139 (500)
Q Consensus 127 -~~~~~~l~~~i~~ 139 (500)
..+.+++.+.+.+
T Consensus 73 ~~~s~~e~~~~l~~ 86 (111)
T cd03036 73 PSLSEEEALELLSS 86 (111)
T ss_pred ccCCHHHHHHHHHh
Confidence 2345666666665
No 447
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=72.26 E-value=23 Score=25.08 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=48.3
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHH
Q 010824 54 EFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGI 133 (500)
Q Consensus 54 ~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l 133 (500)
+++.++|+.|++..-.+.. ++ -.+.+..++.... ...+.+...-..+|++. .+| .. -.+...|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~--i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~--~~g-~~------l~dS~~I 63 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KG--IPYELVPVDPEEK-RPEFLKLNPKGKVPVLV--DDG-EV------LTDSAAI 63 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HT--EEEEEEEEBTTST-SHHHHHHSTTSBSSEEE--ETT-EE------EESHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cC--CeEEEeccCcccc-hhHHHhhcccccceEEE--ECC-EE------EeCHHHH
Confidence 3667899999988644442 22 1255666665443 34577778888899997 334 43 2477889
Q ss_pred HHHHHhhcCC
Q 010824 134 VEYLKKQSGP 143 (500)
Q Consensus 134 ~~~i~~~~~~ 143 (500)
.+|+.+..+.
T Consensus 64 ~~yL~~~~~~ 73 (75)
T PF13417_consen 64 IEYLEERYPG 73 (75)
T ss_dssp HHHHHHHSTS
T ss_pred HHHHHHHcCC
Confidence 9999887654
No 448
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.04 E-value=41 Score=32.06 Aligned_cols=109 Identities=17% Similarity=0.287 Sum_probs=70.1
Q ss_pred cCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCC
Q 010824 47 KHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKG 126 (500)
Q Consensus 47 ~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g 126 (500)
++.+-|=.|++-.|..| |...++...+.-.+|+|.-..+|-.-..+ =.+.-+|..+|++++ +|+. --.|
T Consensus 115 ~g~~~FETy~SltC~nC----PDVVQALN~msvlNp~I~H~~IdGa~Fq~--Evear~IMaVPtvfl---nGe~--fg~G 183 (520)
T COG3634 115 DGDFHFETYFSLTCHNC----PDVVQALNLMSVLNPRIKHTAIDGALFQD--EVEARNIMAVPTVFL---NGEE--FGQG 183 (520)
T ss_pred CCceeEEEEEEeeccCC----hHHHHHHHHHHhcCCCceeEEecchhhHh--HHHhccceecceEEE---cchh--hccc
Confidence 55666777888889999 44444444444447789999999766554 556678999999866 3343 3467
Q ss_pred CCCHHHHHHHHHhhcCCCccccCChhhHhhhhccCCeEEEEEecCCCc
Q 010824 127 PREADGIVEYLKKQSGPASAEIKSAEDASSFIGEKKVVIIGVFPNFSG 174 (500)
Q Consensus 127 ~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~ 174 (500)
.++.++|++-+..-..+ ...+++...+..-+++....+-+
T Consensus 184 Rmtleeilaki~~gaa~--------~~ae~~~~k~~yDVLvVGgGPAg 223 (520)
T COG3634 184 RMTLEEILAKIDTGAAK--------RDAEEFNAKDAYDVLVVGGGPAG 223 (520)
T ss_pred ceeHHHHHHHhcCCccc--------cchHHhhccCCceEEEEcCCcch
Confidence 89999988877653322 22334455555555555543333
No 449
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=71.71 E-value=28 Score=31.45 Aligned_cols=91 Identities=16% Similarity=0.292 Sum_probs=61.7
Q ss_pred CCeEEEEEECCCChh-HhhhhHHHHHHHHHcCCCCce----EEEEEeCCCCCCC--------------------------
Q 010824 393 GKNVLLEFYAPWCGH-CKKLAPILDEVAVSYQNDADV----VIAKFDATANDIP-------------------------- 441 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~-c~~~~~~~~~~~~~~~~~~~~----~~~~id~~~~~~~-------------------------- 441 (500)
++.+++||.-+.||. |-+....+..+...++...++ .|+.+|-+.+...
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 788999999999986 877777777777777554443 5778887543211
Q ss_pred CCC---------------CCcCcceEEEEEcCCCceEEecCC-CCHHHHHHHHHhhcC
Q 010824 442 GDT---------------FEVQGYPTVFFRSASGKTVPYEGD-RTKEDIVDFIENNRD 483 (500)
Q Consensus 442 ~~~---------------~~i~~~P~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~~~~ 483 (500)
++. |-+...=.++++++.++.+.|.|. .+.+++.+-|.++..
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 111 223333345556777777877775 888999888877654
No 450
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=71.65 E-value=9.2 Score=30.84 Aligned_cols=47 Identities=9% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCCCCCCCCCcCcceEEEEEcCCC-----------ceEEecCCCCHHHHHHHHHhhcC
Q 010824 437 ANDIPGDTFEVQGYPTVFFRSASG-----------KTVPYEGDRTKEDIVDFIENNRD 483 (500)
Q Consensus 437 ~~~~~~~~~~i~~~P~~~~~~~~~-----------~~~~~~g~~~~~~l~~~i~~~~~ 483 (500)
-++...++|+|+.+|++++...+. ...+..|..+.+.-.+.+.+...
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 367788899999999999997663 25567799999988888886543
No 451
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.13 E-value=59 Score=26.98 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=55.8
Q ss_pred eEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh---------hHHHHH-h
Q 010824 33 VLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA---------NKELAS-Q 102 (500)
Q Consensus 33 v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~---------~~~~~~-~ 102 (500)
+..++.+.+...--+++++||-=.|+.|+.--++ ..++.+.++|++.| +.+...-|.+.. -.++|+ .
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 4556666666666799999999999999987655 78899999998877 778888887733 123665 4
Q ss_pred cCcccccEEEEE
Q 010824 103 YEIRGFPTIKIL 114 (500)
Q Consensus 103 ~~i~~~P~~~~~ 114 (500)
||++ +|.+-=.
T Consensus 87 YgVt-Fp~f~Ki 97 (162)
T COG0386 87 YGVT-FPMFSKI 97 (162)
T ss_pred cCce-eeeeeEE
Confidence 6654 4554433
No 452
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=70.84 E-value=5.7 Score=31.46 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=44.8
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCC----CcCcceEEEEEcCCCceE-Ee-----cC
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF----EVQGYPTVFFRSASGKTV-PY-----EG 467 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~i~~~P~~~~~~~~~~~~-~~-----~g 467 (500)
..|+.++|+.|+.....|.+. ++.+-.+|+.+++.....+ ...+...--++...+... .. ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~--------~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~~~~~ 73 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN--------GIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTSNTFL 73 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc--------CCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCchhhcc
Confidence 468999999999988877763 4677778887654443211 122221222333333322 11 13
Q ss_pred CCCHHHHHHHHHhhc
Q 010824 468 DRTKEDIVDFIENNR 482 (500)
Q Consensus 468 ~~~~~~l~~~i~~~~ 482 (500)
.++.++++++|.++-
T Consensus 74 ~ls~~e~~~~i~~~p 88 (117)
T TIGR01617 74 DLSDKEALELLAEDP 88 (117)
T ss_pred cCCHHHHHHHHHhCc
Confidence 467788888887653
No 453
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=70.67 E-value=17 Score=33.06 Aligned_cols=70 Identities=16% Similarity=0.080 Sum_probs=43.7
Q ss_pred CeEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEE
Q 010824 376 PVKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFF 455 (500)
Q Consensus 376 ~~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~ 455 (500)
...+++..++. .++|+.+++..+.|||.|-..+=.+.....++++- .+...+-|. .+ .-..+|++.+
T Consensus 45 ~~~kvsn~d~~----~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~---~d-----~~pn~Ptl~F 111 (249)
T PF06053_consen 45 NFFKVSNQDLA----PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDP---YD-----NYPNTPTLIF 111 (249)
T ss_pred ceeeecCcccC----CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCc---cc-----CCCCCCeEEE
Confidence 34555554432 67899999999999999977766666666777752 333322222 11 2245688877
Q ss_pred EcC
Q 010824 456 RSA 458 (500)
Q Consensus 456 ~~~ 458 (500)
..-
T Consensus 112 ~~~ 114 (249)
T PF06053_consen 112 NNY 114 (249)
T ss_pred ecC
Confidence 643
No 454
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.87 E-value=7.4 Score=31.55 Aligned_cols=37 Identities=16% Similarity=0.398 Sum_probs=26.2
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP 441 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ 441 (500)
+..|+.++|+.|+.....|.+- ++.|-.+|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------gi~~~~~di~~~~~s 38 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN--------QIDYTEKNIVSNSMT 38 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc--------CCCeEEEEeeCCcCC
Confidence 5688999999999877766654 455666676655444
No 455
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=69.55 E-value=15 Score=26.14 Aligned_cols=72 Identities=13% Similarity=0.158 Sum_probs=38.5
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCC--CCCCCCCCcCcceEEEEEcC-CCceEEecCCCCHHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATAN--DIPGDTFEVQGYPTVFFRSA-SGKTVPYEGDRTKED 473 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~i~~~P~~~~~~~-~~~~~~~~g~~~~~~ 473 (500)
+.+|+.+.|+.|+..+-.+.... +.+-.++++.. +.. +.-....+|++..=.. ++.+. ..-..
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~g--------i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~l-----~eS~~ 67 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHG--------IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQL-----VDSSV 67 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC--------CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccEE-----EcHHH
Confidence 34688899999998886666553 22322333221 111 1123357898864322 12221 23456
Q ss_pred HHHHHHhhc
Q 010824 474 IVDFIENNR 482 (500)
Q Consensus 474 l~~~i~~~~ 482 (500)
|.+||.+.+
T Consensus 68 I~~yL~~~~ 76 (77)
T cd03040 68 IISTLKTYL 76 (77)
T ss_pred HHHHHHHHc
Confidence 777777654
No 456
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=69.37 E-value=81 Score=27.91 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=61.4
Q ss_pred CCCeEEEEEECCCChh-HhhhhHHHHHHHHHcC-C---CCceEEEEEeCCCCCC------------C-------------
Q 010824 392 SGKNVLLEFYAPWCGH-CKKLAPILDEVAVSYQ-N---DADVVIAKFDATANDI------------P------------- 441 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~~-c~~~~~~~~~~~~~~~-~---~~~~~~~~id~~~~~~------------~------------- 441 (500)
.+++++|+|.-..|+. |-.....+..+.+.+. . +-.+.++++|-+.... +
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 5889999998777775 8888777777776664 2 2246666777544210 0
Q ss_pred ---------------C--CCCCcCcceEEEEEcCCCceE-EecCCCCHHHHHHHHHhhcCC
Q 010824 442 ---------------G--DTFEVQGYPTVFFRSASGKTV-PYEGDRTKEDIVDFIENNRDK 484 (500)
Q Consensus 442 ---------------~--~~~~i~~~P~~~~~~~~~~~~-~~~g~~~~~~l~~~i~~~~~~ 484 (500)
. ..+.+..-..+++++++|+.. .|.+..+.+.+.+.|+....+
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 0 024455566778888777754 566666789999988876643
No 457
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.71 E-value=8.1 Score=29.94 Aligned_cols=36 Identities=17% Similarity=0.418 Sum_probs=26.9
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEec
Q 010824 49 NFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDA 91 (500)
Q Consensus 49 ~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~ 91 (500)
|.++|.|-.|.|+.|......+.++..+ ..+.+||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~lede-------Y~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDE-------YDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcc-------ccEEEEEe
Confidence 4689999999999999887777555444 44566664
No 458
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=68.52 E-value=16 Score=25.51 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=36.1
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHH
Q 010824 54 EFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGI 133 (500)
Q Consensus 54 ~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l 133 (500)
.++.++|++|.+.+-.+... |-.+....++-..... ..+..+-..+|++.. ++| .. -.....|
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-------gl~~~~~~~~~~~~~~--~~~~~~~~~vP~L~~-~~~-~~------l~es~aI 65 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-------NIPVEQIILQNDDEAT--PIRMIGAKQVPILEK-DDG-SF------MAESLDI 65 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-------CCCeEEEECCCCchHH--HHHhcCCCccCEEEe-CCC-eE------eehHHHH
Confidence 56678999999876555432 2224444444322222 334455566898843 322 22 2345556
Q ss_pred HHHHH
Q 010824 134 VEYLK 138 (500)
Q Consensus 134 ~~~i~ 138 (500)
.+|+.
T Consensus 66 ~~yL~ 70 (71)
T cd03037 66 VAFID 70 (71)
T ss_pred HHHHh
Confidence 66653
No 459
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=68.24 E-value=9.3 Score=30.12 Aligned_cols=77 Identities=12% Similarity=0.264 Sum_probs=44.4
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCC----CCcCcceEEEEEcCCCceEE-ec---CC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDT----FEVQGYPTVFFRSASGKTVP-YE---GD 468 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~i~~~P~~~~~~~~~~~~~-~~---g~ 468 (500)
+.+|+.++|+.|+.....|.+. ++.+-.+|+..++..... +...+.|.--++..++...+ .. ..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~--------gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ 73 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH--------QIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDE 73 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCccc
Confidence 4578889999999888877764 466667787665433221 11122343334444433221 11 24
Q ss_pred CCHHHHHHHHHhh
Q 010824 469 RTKEDIVDFIENN 481 (500)
Q Consensus 469 ~~~~~l~~~i~~~ 481 (500)
.+.+++++.|.++
T Consensus 74 ls~~e~i~~l~~~ 86 (115)
T cd03032 74 LSLSELIRLISEH 86 (115)
T ss_pred CCHHHHHHHHHhC
Confidence 6777777777764
No 460
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=67.62 E-value=19 Score=25.75 Aligned_cols=71 Identities=13% Similarity=0.138 Sum_probs=38.3
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC----CCCCCCcCcceEEEEEcCCCceEEecCCCCHH
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI----PGDTFEVQGYPTVFFRSASGKTVPYEGDRTKE 472 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~ 472 (500)
+.+++.++|+.|+..+-.+.+.. +-+-.+++..... ..+.-....+|++.. ..|+... ....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g--------i~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~-~~~~~~l-----~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE--------LDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD-PNTGVQM-----FESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC--------CcEEEEECCCChHHHHHHHHhCCCCcccEEEe-CCCCeEE-----EcHH
Confidence 34677889999988777666653 3333345543221 111123357898743 2233222 3345
Q ss_pred HHHHHHHhh
Q 010824 473 DIVDFIENN 481 (500)
Q Consensus 473 ~l~~~i~~~ 481 (500)
.|.+||.+.
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 677776653
No 461
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=67.14 E-value=56 Score=26.63 Aligned_cols=89 Identities=8% Similarity=0.104 Sum_probs=58.7
Q ss_pred cCCCeEEEEEECCCCh----hHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC------------------CCCCCcC
Q 010824 391 NSGKNVLLEFYAPWCG----HCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP------------------GDTFEVQ 448 (500)
Q Consensus 391 ~~~~~~~v~f~~~~c~----~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~------------------~~~~~i~ 448 (500)
+..|.++||.+++.-+ .|+...-. +.+.+-+++ ++.+.-.|++..+.- .+.++..
T Consensus 19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~s-e~Vi~fl~~--nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~ 95 (136)
T cd02990 19 RDRKLLAIYLHHDESVLSNVFCSQLLCA-ESIVQYLSQ--NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTD 95 (136)
T ss_pred hhcceEEEEEcCCCCccHHHHHHHHhcC-HHHHHHHHc--CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcC
Confidence 4578999999999864 45444210 112222333 688888888775321 2235688
Q ss_pred cceEEEEEcCCCc----eEEecCCCCHHHHHHHHHhhc
Q 010824 449 GYPTVFFRSASGK----TVPYEGDRTKEDIVDFIENNR 482 (500)
Q Consensus 449 ~~P~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~~ 482 (500)
.+|.+.+.-.... +.+..|..+.++++.-|...+
T Consensus 96 ~fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~~v 133 (136)
T cd02990 96 QLPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIEAM 133 (136)
T ss_pred CCCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHHHH
Confidence 9999999954432 337889999999998887654
No 462
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=67.02 E-value=8.4 Score=33.10 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=25.5
Q ss_pred EEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeC
Q 010824 399 EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDA 435 (500)
Q Consensus 399 ~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~ 435 (500)
+|+.|.|+.|-...|.|.++...+++. +.+-.+-.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~--i~~~~i~~ 36 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNK--IEFRFIPG 36 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TT--EEEEEEE-
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCc--EEEEEEEc
Confidence 689999999999999999999999874 44444433
No 463
>PF02645 DegV: Uncharacterised protein, DegV family COG1307; InterPro: IPR003797 This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each other than to most homologs from other species. This suggests both recent paralogy and diversity of function.; PDB: 2DT8_A 3LUP_A 3NYI_B 3PL5_A 1PZX_B 1MGP_A 1VPV_B 3FYS_A 3EGL_C 3JR7_A ....
Probab=65.55 E-value=1e+02 Score=28.74 Aligned_cols=107 Identities=14% Similarity=0.115 Sum_probs=63.6
Q ss_pred EecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCCCccccCChhhHhhhh----c-cCCe
Q 010824 89 VDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGPASAEIKSAEDASSFI----G-EKKV 163 (500)
Q Consensus 89 vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~----~-~~~~ 163 (500)
+|...+-.+++.++++|.-+|--+.+++. . +.-....+.+++.+.+.+.-..+-+--.+..++.+.. . ..+.
T Consensus 6 tDS~~dl~~~~~~~~~i~vvPl~i~~~~~--~-y~D~~~i~~~efy~~l~~~~~~p~TS~ps~~~~~~~f~~~~~~gyd~ 82 (280)
T PF02645_consen 6 TDSTSDLPPELAEEYGIYVVPLNIIIDGK--E-YRDGVDISPEEFYEKLRESGEIPKTSQPSPGEFEEAFEKLLEEGYDE 82 (280)
T ss_dssp EEGGG---HHHHHHTTEEEE--EEEETTE--E-EETTTTSCHHHHHHHHHHTTSEEEEE---HHHHHHHHHHHHHTTTSE
T ss_pred ECCCCCCCHHHHHhCCeEEEeEEEecCCe--E-EecCCCCCHHHHHHHHHhcCCCceecCCCHHHHHHHHHHHHHCCCCe
Confidence 34444444458999999999999888742 2 2222268999999999654322222222555553333 2 3455
Q ss_pred EEEEEecCCCchhHHHHHHHHHHhcCCceEEEeecc
Q 010824 164 VIIGVFPNFSGEEFENYTALAEKLRSDYEFGHTQNA 199 (500)
Q Consensus 164 ~~i~~~~~~~~~~~~~f~~~a~~~~~~~~f~~~~~~ 199 (500)
++.....+.-+..++....+++.+ .+..+.++.+.
T Consensus 83 ii~i~iSs~LSgty~~a~~aa~~~-~~~~i~ViDS~ 117 (280)
T PF02645_consen 83 IIVITISSGLSGTYNSARLAAKML-PDIKIHVIDSK 117 (280)
T ss_dssp EEEEES-TTT-THHHHHHHHHHHH-TTTEEEEEE-S
T ss_pred EEEEeCCcchhhHHHHHHHHHhhc-CcCEEEEEeCC
Confidence 777778888899999999999888 55566666643
No 464
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=65.32 E-value=12 Score=25.53 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=31.8
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEE
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~ 113 (500)
..|+.++|+.|.+..-.+... +-.+....++.......++-+..+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEK-------GLPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHc-------CCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 357788999999876555543 212444455543333212455566778898754
No 465
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=63.81 E-value=9.8 Score=29.91 Aligned_cols=43 Identities=7% Similarity=0.056 Sum_probs=29.3
Q ss_pred eCCCCCCCCCCCCcCcceEEEEEcCC------------CceEEecCCCCHHHHHH
Q 010824 434 DATANDIPGDTFEVQGYPTVFFRSAS------------GKTVPYEGDRTKEDIVD 476 (500)
Q Consensus 434 d~~~~~~~~~~~~i~~~P~~~~~~~~------------~~~~~~~g~~~~~~l~~ 476 (500)
++.-++...++|+|+.+|++++-+.. .......|..+...-.+
T Consensus 56 ~v~IdP~~F~~y~I~~VPa~V~~~~~~~~~~~~~~~~~~~~~~~~Gdvsl~~aLe 110 (113)
T PF09673_consen 56 GVQIDPRLFRQYNITAVPAFVVVKDRVCVCLSCGCCSPEDYDVVYGDVSLDYALE 110 (113)
T ss_pred ceeEChhHHhhCCceEcCEEEEEcCcccccccCCcCCCCcceEEEccccHHHHHH
Confidence 34447888899999999999999651 22344556666655443
No 466
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=63.30 E-value=17 Score=24.63 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=29.3
Q ss_pred EEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC--CCCCCCcCcceEEEE
Q 010824 399 EFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI--PGDTFEVQGYPTVFF 455 (500)
Q Consensus 399 ~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~i~~~P~~~~ 455 (500)
+|+.++|+.|+..+-.+..... .+....++...... ..+......+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 6788999999877776666522 23444444333222 122245567897743
No 467
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.69 E-value=13 Score=30.08 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=26.1
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP 441 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ 441 (500)
+..|+.++|+.|+.....|.+- ++.|-.+|+..++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~--------~i~~~~~d~~~~~~s 38 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH--------QLSYKEQNLGKEPLT 38 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc--------CCCeEEEECCCCCCC
Confidence 4578889999999877665543 466666777665444
No 468
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=61.95 E-value=17 Score=26.84 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=54.9
Q ss_pred eEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCC
Q 010824 395 NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 395 ~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~ 470 (500)
.++=.|.+..-+.++.....+..+....-.. .+.+--||+.+++...+.+++..+|+++=.-+.. ..+..|.++
T Consensus 4 ~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P-~rriiGdls 77 (87)
T TIGR02654 4 YVLKLYVAGNTPNSVRALKTLKNILETEFQG-VYALKVIDVLKNPQLAEEDKILATPTLSKILPPP-VRKIIGDLS 77 (87)
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCC-cceeecccc
Confidence 4555677788888888888888887665432 4888889999999999999999999976553332 235667654
No 469
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=61.71 E-value=79 Score=25.01 Aligned_cols=98 Identities=11% Similarity=0.139 Sum_probs=58.2
Q ss_pred hhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEE-ecChhh---------hHHHHHhcCccc-cc
Q 010824 41 FSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKV-DANEEA---------NKELASQYEIRG-FP 109 (500)
Q Consensus 41 ~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~v-d~~~~~---------~~~~~~~~~i~~-~P 109 (500)
+....-++++++|.-=+...+.-+.....+.+....+.+. ++.+..+ +-.... ...+.++|++.. .-
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR--di~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~f 80 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER--DIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGGF 80 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC--ceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCce
Confidence 3444445555444332445555566666666655555543 2555544 222222 124888888542 24
Q ss_pred EEEEEecCCceeeecCCCCCHHHHHHHHHhh
Q 010824 110 TIKILRNGGKTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
++++...+|....++.++.+.+.|.+.|..+
T Consensus 81 ~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 81 TVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred EEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 5556665667778899999999999998764
No 470
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=60.71 E-value=15 Score=30.68 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=28.9
Q ss_pred CCeEEEEEECCCChhHhhh-hHHHHHHHHHcCCCCce-EEEEEeCC
Q 010824 393 GKNVLLEFYAPWCGHCKKL-APILDEVAVSYQNDADV-VIAKFDAT 436 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~-~~~~~~~~~~~~~~~~~-~~~~id~~ 436 (500)
+..+++.|.+.||+.|... .+.|.+....++.. ++ .++.+..+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~-g~~~V~~iS~D 74 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAK-GVDEVICVSVN 74 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHC-CCCEEEEEECC
Confidence 3455555566799999987 88899988888543 34 34444443
No 471
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=60.47 E-value=6.6 Score=30.97 Aligned_cols=79 Identities=11% Similarity=0.265 Sum_probs=40.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEEEecCCceeeecC---C
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKILRNGGKTIQEYK---G 126 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~---g 126 (500)
+..|+.++|+.|++....+++. | +.+-.+|...++ ..++.+-....+.|.--+++..+..+.... .
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-------g--i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~ 72 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-------Q--IPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDID 72 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------C--CceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcc
Confidence 3467789999999987655542 3 445555554432 222333333222333335555444332211 2
Q ss_pred CCCHHHHHHHHHh
Q 010824 127 PREADGIVEYLKK 139 (500)
Q Consensus 127 ~~~~~~l~~~i~~ 139 (500)
..+.+++.+.+.+
T Consensus 73 ~ls~~e~i~~l~~ 85 (115)
T cd03032 73 ELSLSELIRLISE 85 (115)
T ss_pred cCCHHHHHHHHHh
Confidence 3455666666655
No 472
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=59.95 E-value=16 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHhcCcccccEEEEEecCC----------ceeeecCCCCCHHHHHHHHHhh
Q 010824 99 LASQYEIRGFPTIKILRNGG----------KTIQEYKGPREADGIVEYLKKQ 140 (500)
Q Consensus 99 ~~~~~~i~~~P~~~~~~~~~----------~~~~~~~g~~~~~~l~~~i~~~ 140 (500)
+-++|+|+.+|++++.+++. .......|..+.+..++.+.+.
T Consensus 63 lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 63 WFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred HHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 99999999999999998762 1245667888888877777753
No 473
>PRK09301 circadian clock protein KaiB; Provisional
Probab=59.45 E-value=19 Score=27.50 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=59.5
Q ss_pred CCeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcCcceEEEEEcCCCceEEecCCCC-H
Q 010824 393 GKNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQGYPTVFFRSASGKTVPYEGDRT-K 471 (500)
Q Consensus 393 ~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~-~ 471 (500)
...++=.|.+..-+..+.....+.++....-.. .+.+--||+.+++...+.+++..+|+++=.-+.. ..++.|.++ .
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P-~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKG-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPP-VRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCC-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCC-cceeecccccH
Confidence 345666778888888888888888887665432 4888889999999999999999999976553322 346677654 4
Q ss_pred HHHHH
Q 010824 472 EDIVD 476 (500)
Q Consensus 472 ~~l~~ 476 (500)
+.+..
T Consensus 83 ~kVL~ 87 (103)
T PRK09301 83 EKVLI 87 (103)
T ss_pred HHHHH
Confidence 44443
No 474
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=59.38 E-value=1e+02 Score=26.81 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=59.6
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh------------------------hhhHHHHHhc
Q 010824 49 NFIVVEFY-APWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE------------------------EANKELASQY 103 (500)
Q Consensus 49 ~~~lv~f~-~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~------------------------~~~~~~~~~~ 103 (500)
+.+++.|| +..-+.|-.....+.+.+.+++..+..+.-+.+|-.. +...++|+.|
T Consensus 34 kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~y 113 (194)
T COG0450 34 KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIARAY 113 (194)
T ss_pred cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHHHc
Confidence 66666666 4566677778889999999998877555444444221 1233588888
Q ss_pred Cccc------ccEEEEEecCCceee--ecCC--CCCHHHHHHHHHhhc
Q 010824 104 EIRG------FPTIKILRNGGKTIQ--EYKG--PREADGIVEYLKKQS 141 (500)
Q Consensus 104 ~i~~------~P~~~~~~~~~~~~~--~~~g--~~~~~~l~~~i~~~~ 141 (500)
|+-. .-.+++.+++|.... .|.. .++.+++++-+....
T Consensus 114 gvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 114 GVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred CCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHHH
Confidence 7642 446677777765432 2332 488888888887543
No 475
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.25 E-value=13 Score=26.26 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=18.5
Q ss_pred EEEECCCChhHhhhhHHHHHHH
Q 010824 398 LEFYAPWCGHCKKLAPILDEVA 419 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~ 419 (500)
++|++.-||.|..+...++++.
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~ 26 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN 26 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC
Confidence 6799999999988888877763
No 476
>PRK12559 transcriptional regulator Spx; Provisional
Probab=59.15 E-value=9 Score=31.07 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=38.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh--hHHHHHhcCcccccEEEEEecCCceeeecC---C
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA--NKELASQYEIRGFPTIKILRNGGKTIQEYK---G 126 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~---g 126 (500)
++.|+.++|+.|++...-+++ .+ +.+-.+|...++ ..++..-+...+.+.--+++..|..+.... .
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~g--i~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~~ 72 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQ--IDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINIE 72 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC--CCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCcc
Confidence 467889999999997644442 23 444444443322 223444333333343345555444332211 1
Q ss_pred CCCHHHHHHHHHh
Q 010824 127 PREADGIVEYLKK 139 (500)
Q Consensus 127 ~~~~~~l~~~i~~ 139 (500)
..+.+++.+.+.+
T Consensus 73 ~ls~~e~i~ll~~ 85 (131)
T PRK12559 73 ELSLNEFYKLIIE 85 (131)
T ss_pred cCCHHHHHHHHHh
Confidence 2344555555554
No 477
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=55.65 E-value=12 Score=27.31 Aligned_cols=57 Identities=18% Similarity=0.163 Sum_probs=44.5
Q ss_pred EECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEe
Q 010824 55 FYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILR 115 (500)
Q Consensus 55 f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~ 115 (500)
|-+..-+.+.+.......+.+..- +..+.+-.||...++. +++.++|-.+||++=-.
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l--~~~~~LeVIDv~~~P~--lAe~~~ivAtPtLik~~ 59 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYL--GGRYELEVIDVLEQPE--LAEEDRIVATPTLIKES 59 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHC--TTTEEEEEEETTTSHS--HHTTTEEECHHHHHTTS
T ss_pred EECCCChHHHHHHHHHHHHHHhhC--CCcEEEEEEEcccCHh--HHhHCCeeecceEeecc
Confidence 334555667778888888877754 3459999999999999 99999999999985433
No 478
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=54.80 E-value=23 Score=24.67 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=33.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecCh--hhhHHHHHhcCcccccEEEE
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANE--EANKELASQYEIRGFPTIKI 113 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~--~~~~~~~~~~~i~~~P~~~~ 113 (500)
..|+.++|+.|++.+-.+... +-.+....++... ....++.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-------~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-------GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-------CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 467788999999887655533 2224444555422 12233666667778899964
No 479
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=54.63 E-value=41 Score=23.38 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=41.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEecCCceeeecCCCCCHHH
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRNGGKTIQEYKGPREADG 132 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~ 132 (500)
..|+.++|+.|++..-.+... |-++....+|.... ..++.+......+|++. . ||.. -.+...
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~-------gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~--~-~~~~------l~es~a 64 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEK-------GVSVEIIDVDPDNP-PEDLAELNPYGTVPTLV--D-RDLV------LYESRI 64 (73)
T ss_pred EEEECCCChhHHHHHHHHHHc-------CCccEEEEcCCCCC-CHHHHhhCCCCCCCEEE--E-CCEE------EEcHHH
Confidence 467789999999886554332 32344555554432 23366666677899774 2 3222 355667
Q ss_pred HHHHHHh
Q 010824 133 IVEYLKK 139 (500)
Q Consensus 133 l~~~i~~ 139 (500)
|.+|+.+
T Consensus 65 I~~yL~~ 71 (73)
T cd03059 65 IMEYLDE 71 (73)
T ss_pred HHHHHHh
Confidence 7777654
No 480
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=52.28 E-value=25 Score=30.39 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=32.0
Q ss_pred HHHHhcCcccccEEEEEecCCceeeecCC--CCCHHHHHHHHHhhc
Q 010824 98 ELASQYEIRGFPTIKILRNGGKTIQEYKG--PREADGIVEYLKKQS 141 (500)
Q Consensus 98 ~~~~~~~i~~~P~~~~~~~~~~~~~~~~g--~~~~~~l~~~i~~~~ 141 (500)
.++++.++.++||+.+-++| +....=.| -.+.+.+..++.+.+
T Consensus 165 ~l~~rlg~~GfPTl~le~ng-~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 165 RLMQRLGAAGFPTLALERNG-TMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHhccCCCCeeeeeeCC-ceEeccCCcccCCcHHHHHHHHHHH
Confidence 48889999999999999976 55444455 356678888877644
No 481
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=51.22 E-value=14 Score=28.53 Aligned_cols=19 Identities=21% Similarity=0.141 Sum_probs=15.0
Q ss_pred EEEECCCChhhhhhhHHHH
Q 010824 53 VEFYAPWCGHCKKLAPEYE 71 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~ 71 (500)
..|+.++|+.|++...-+.
T Consensus 2 ~iy~~~~C~~crka~~~L~ 20 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLE 20 (105)
T ss_pred EEEeCCCCHHHHHHHHHHH
Confidence 5688999999999865444
No 482
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=49.99 E-value=1.1e+02 Score=24.11 Aligned_cols=84 Identities=10% Similarity=0.097 Sum_probs=49.9
Q ss_pred eEEEEEeCCCC-CchHHHHHHHHHHHhhcCceeEEEEE-cccchh-----------hHHhhcCCCCCCCceEEEEeCCC-
Q 010824 270 KAMLFMNFSSE-GTEPIQSKYREVAEQYKGQGISFLLG-DLEASQ-----------GAFQYFGLQESQVPLIVIQTNDG- 335 (500)
Q Consensus 270 ~~~l~~~~~~~-~~~~~~~~l~~va~~~~~~~~~f~~~-d~~~~~-----------~~~~~~gi~~~~~P~i~i~~~~~- 335 (500)
.+++|.+...+ ......+.+..-...+..+.+.+..+ +..... .+.+.|+++... -.++++..+|
T Consensus 12 ~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~~~~-f~~vLiGKDG~ 90 (118)
T PF13778_consen 12 LLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRKRLRIPPGG-FTVVLIGKDGG 90 (118)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHHHhCCCCCc-eEEEEEeCCCc
Confidence 34455542222 23566666666444555554444444 333333 677888988544 5566666666
Q ss_pred Ccc-CCCCCChhhHHHHHHH
Q 010824 336 QKY-LKPNLDADQIAPWVKE 354 (500)
Q Consensus 336 ~~y-~~~~~~~~~i~~fi~~ 354 (500)
.+- +...++.+.|-..|+.
T Consensus 91 vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 91 VKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred EEEecCCCCCHHHHHHHHhC
Confidence 444 6788899999988876
No 483
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=49.83 E-value=17 Score=34.65 Aligned_cols=80 Identities=14% Similarity=0.241 Sum_probs=51.5
Q ss_pred ChhhhhhhH----HHHHHHHHhcCCCCCeEEEEEecC-hhhhHHHHHhcCcccc-cEEEEEecCCceeeecCCCCCHHHH
Q 010824 60 CGHCKKLAP----EYEKAASELSSHDPPVVLAKVDAN-EEANKELASQYEIRGF-PTIKILRNGGKTIQEYKGPREADGI 133 (500)
Q Consensus 60 c~~C~~~~~----~~~~~~~~~~~~~~~v~~~~vd~~-~~~~~~~~~~~~i~~~-P~~~~~~~~~~~~~~~~g~~~~~~l 133 (500)
||.|.+-.. ...++.+.+.+....+.++..=|. +.+.+.-...+||.+- +...+|.+ |+.+....+..-.+.|
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~-Gk~v~kv~~~~~~~~l 349 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVD-GEKIKTLPEENIVEEL 349 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEEC-CEEeeeeChHhHHHHH
Confidence 666665544 344444555555555899999994 6666556677887754 55666665 4888877777666666
Q ss_pred HHHHHhh
Q 010824 134 VEYLKKQ 140 (500)
Q Consensus 134 ~~~i~~~ 140 (500)
.+-+.+.
T Consensus 350 ~~~i~~~ 356 (360)
T PRK00366 350 EAEIEAY 356 (360)
T ss_pred HHHHHHH
Confidence 6666543
No 484
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=49.19 E-value=47 Score=26.04 Aligned_cols=45 Identities=22% Similarity=0.442 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcCcccccEEEEEec
Q 010824 65 KLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYEIRGFPTIKILRN 116 (500)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~P~~~~~~~ 116 (500)
.+.+.+..+.+-....+. . ..+. =++. +-++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~-~--~~v~--IdP~--~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDP-C--PGVQ--IDPR--LFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCC-C--ccee--EChh--HHhhCCceEcCEEEEEcC
Confidence 566666666655544321 2 2222 2344 999999999999999887
No 485
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=48.73 E-value=56 Score=29.24 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=42.6
Q ss_pred eEEEeccchhhhhhcCCCeEEEEEECCCChhHhhhhHHHHHHHHHc--CCCCceEEEEEeCC
Q 010824 377 VKVLVADSLQDMVFNSGKNVLLEFYAPWCGHCKKLAPILDEVAVSY--QNDADVVIAKFDAT 436 (500)
Q Consensus 377 ~~~l~~~~~~~~~~~~~~~~~v~f~~~~c~~c~~~~~~~~~~~~~~--~~~~~~~~~~id~~ 436 (500)
...+.+.+.. ....+..++|-+-..+|..|..-...|+.|..++ ++..++.|+.||--
T Consensus 12 ~W~i~~~~pm--~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 12 PWKIGGQDPM--LNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CceECCchHh--hhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 4445543332 2245788888899999999999888999988777 34468999999954
No 486
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=47.22 E-value=64 Score=26.20 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=48.6
Q ss_pred eEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCCcC----cceEEEEEcCCCceEEecCCCC
Q 010824 395 NVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFEVQ----GYPTVFFRSASGKTVPYEGDRT 470 (500)
Q Consensus 395 ~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~----~~P~~~~~~~~~~~~~~~g~~~ 470 (500)
.-++.+++|.|+=|.+....++.. ++.+-.+..+.-+.+-++++|. +==| .++ .| .-..|..-
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~~--------Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT-~VI-~G---y~vEGHVP 92 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKAN--------GFEVKVVETDDFLALKRRLGIPYEMQSCHT-AVI-NG---YYVEGHVP 92 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHhC--------CcEEEEeecCcHHHHHHhcCCChhhccccE-EEE-cC---EEEeccCC
Confidence 446779999999998887777632 4666666665555555555553 1112 222 12 34568899
Q ss_pred HHHHHHHHHhhc
Q 010824 471 KEDIVDFIENNR 482 (500)
Q Consensus 471 ~~~l~~~i~~~~ 482 (500)
++.+.+++++.-
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 999999998754
No 487
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=47.08 E-value=21 Score=28.89 Aligned_cols=35 Identities=26% Similarity=0.484 Sum_probs=22.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhh
Q 010824 52 VVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEA 95 (500)
Q Consensus 52 lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~ 95 (500)
+..|+.++|+.|++...-+.+ .| +.+-.+|...++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~g--i~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HD--IPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cC--CCcEEeeccCCh
Confidence 456789999999998644432 23 555566654433
No 488
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.99 E-value=39 Score=30.14 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCCcCcceEEEEEcCCCceEEecCCCCHHHHHHHHHhhcCCCCCC
Q 010824 443 DTFEVQGYPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPK 488 (500)
Q Consensus 443 ~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 488 (500)
++++|+++|++++ .+ .....|..+.+-+.+-|.+.+++..++
T Consensus 178 ~e~gI~gVP~fv~--d~--~~~V~Gaq~~~v~~~al~~~~~~~~~~ 219 (225)
T COG2761 178 QEMGIRGVPTFVF--DG--KYAVSGAQPYDVLEDALRQLLAEKAEE 219 (225)
T ss_pred HHCCCccCceEEE--cC--cEeecCCCCHHHHHHHHHHHHhccccc
Confidence 3489999999988 22 256789999999999999998776543
No 489
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=46.19 E-value=29 Score=24.29 Aligned_cols=53 Identities=15% Similarity=0.188 Sum_probs=32.9
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChh--hhHHHHHhcCcccccEEE
Q 010824 53 VEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEE--ANKELASQYEIRGFPTIK 112 (500)
Q Consensus 53 v~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~--~~~~~~~~~~i~~~P~~~ 112 (500)
..|+.+.|+.|++.+-.+... |-.+....++.... ..+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-------gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-------GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-------CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 467889999998765444432 32355555654332 123477777777899995
No 490
>PF15284 PAGK: Phage-encoded virulence factor
Probab=42.75 E-value=23 Score=23.90 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=11.6
Q ss_pred CcchhHHHHHHHHHHHH
Q 010824 1 MASSRSILALVLTIACC 17 (500)
Q Consensus 1 m~~~~~~~~~~l~~~~~ 17 (500)
||.+..+++.+++.++.
T Consensus 1 Mkk~ksifL~l~~~LsA 17 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSA 17 (61)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 78777777776555543
No 491
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=42.35 E-value=55 Score=24.87 Aligned_cols=62 Identities=16% Similarity=0.284 Sum_probs=35.0
Q ss_pred ChhhhhccCCeEEEEEECC---CChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhHHHHHhcC-cccccEE
Q 010824 40 NFSDTVSKHNFIVVEFYAP---WCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANKELASQYE-IRGFPTI 111 (500)
Q Consensus 40 ~~~~~~~~~~~~lv~f~~~---~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~-i~~~P~~ 111 (500)
-+++.+++++.++.+=-+| .|+.+.+....+ ... +. +.|+.||.-.+++ +.+... .+.+||+
T Consensus 7 ~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL----~~~---g~-v~~~~vnVL~d~e--iR~~lk~~s~WPT~ 72 (105)
T COG0278 7 RIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQIL----SAC---GV-VDFAYVDVLQDPE--IRQGLKEYSNWPTF 72 (105)
T ss_pred HHHHHhhcCceEEEecCCCCCCCCCccHHHHHHH----HHc---CC-cceeEEeeccCHH--HHhccHhhcCCCCC
Confidence 3566677777554444444 555554443222 222 33 6789999988877 766543 2334444
No 492
>COG3411 Ferredoxin [Energy production and conversion]
Probab=42.25 E-value=50 Score=22.70 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCceEEecCCCCHHHHHHHHHhhcCCCCCC
Q 010824 450 YPTVFFRSASGKTVPYEGDRTKEDIVDFIENNRDKAAPK 488 (500)
Q Consensus 450 ~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 488 (500)
=|.+++|+.| .+++..+.++..+.++.++.+-.++
T Consensus 17 gPvl~vYpeg----vWY~~V~p~~a~rIv~~hl~~Gr~V 51 (64)
T COG3411 17 GPVLVVYPEG----VWYTRVDPEDARRIVQSHLLGGRPV 51 (64)
T ss_pred CCEEEEecCC----eeEeccCHHHHHHHHHHHHhCCCcc
Confidence 4999999877 4555699999999999998754443
No 493
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=42.06 E-value=31 Score=27.06 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.9
Q ss_pred EEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCC
Q 010824 397 LLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIP 441 (500)
Q Consensus 397 ~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~ 441 (500)
+..|+.|.|..|+.....|.+- ++.|-.+|..+.+..
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~--------gi~~~~~d~~~~p~s 38 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA--------GHEVEVRDLLTEPWT 38 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEeehhcCCCC
Confidence 3578899999999877766553 456666777665443
No 494
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.43 E-value=74 Score=26.77 Aligned_cols=100 Identities=20% Similarity=0.307 Sum_probs=66.1
Q ss_pred ceEEcCccChhhhhccCCeEEEEEECCCChhhhhhhHHHHHHHHHhcCCCCCeEEEEEecChhhhH----------HHHH
Q 010824 32 FVLTLDHSNFSDTVSKHNFIVVEFYAPWCGHCKKLAPEYEKAASELSSHDPPVVLAKVDANEEANK----------ELAS 101 (500)
Q Consensus 32 ~v~~l~~~~~~~~~~~~~~~lv~f~~~~c~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----------~~~~ 101 (500)
.+..++.+.+..-.-+++++||-=-|+.|+.-..-...+..+.++|+..| +.+...-|.+...+ -++.
T Consensus 18 ~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCNQFg~QEp~~n~Ei~~f~~~ 95 (171)
T KOG1651|consen 18 SAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCNQFGNQEPGSNEEILNFVKV 95 (171)
T ss_pred EEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccccccCcCCCCcHHHHHHHHh
Confidence 35566666666666789998888889999998877789999999998877 88888888773211 1334
Q ss_pred hcCcccccEEEEEecCCceeeecCCCCCHHHHHHHHHhhcCC
Q 010824 102 QYEIRGFPTIKILRNGGKTIQEYKGPREADGIVEYLKKQSGP 143 (500)
Q Consensus 102 ~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 143 (500)
+|+.. +| +|.. ..-.|. ..+-+.+|+...-+.
T Consensus 96 r~~~~-f~---if~K-----idVNG~-~~~PlykfLK~~~~~ 127 (171)
T KOG1651|consen 96 RYGAE-FP---IFQK-----IDVNGD-NADPLYKFLKKVKGG 127 (171)
T ss_pred ccCCC-Cc---cEeE-----EecCCC-CCchHHHHHhhcCCC
Confidence 55543 22 3321 122332 556677777765543
No 495
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=41.27 E-value=39 Score=24.50 Aligned_cols=34 Identities=21% Similarity=0.459 Sum_probs=23.3
Q ss_pred ccEEEEEecCCceeeecC-CCCCHHHHHHHHHhhc
Q 010824 108 FPTIKILRNGGKTIQEYK-GPREADGIVEYLKKQS 141 (500)
Q Consensus 108 ~P~~~~~~~~~~~~~~~~-g~~~~~~l~~~i~~~~ 141 (500)
-|++.+|+.+|+...+.. ..++.+++.+|+.+..
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 499999998877666554 5689999999998753
No 496
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.12 E-value=26 Score=26.51 Aligned_cols=12 Identities=42% Similarity=0.351 Sum_probs=6.6
Q ss_pred CcchhHHHHHHH
Q 010824 1 MASSRSILALVL 12 (500)
Q Consensus 1 m~~~~~~~~~~l 12 (500)
|.+..+++|+++
T Consensus 1 MaSK~~llL~l~ 12 (95)
T PF07172_consen 1 MASKAFLLLGLL 12 (95)
T ss_pred CchhHHHHHHHH
Confidence 776555555443
No 497
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=39.10 E-value=98 Score=26.44 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCCeEEEEEECCCCh-hHhhhhHHHHHHHHHcCC-CCceEEEEEeCC
Q 010824 392 SGKNVLLEFYAPWCG-HCKKLAPILDEVAVSYQN-DADVVIAKFDAT 436 (500)
Q Consensus 392 ~~~~~~v~f~~~~c~-~c~~~~~~~~~~~~~~~~-~~~~~~~~id~~ 436 (500)
.++.++|+|.-..|+ .|-.....+.++.+.+.. ..++.++.|-++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD 97 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD 97 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC
Confidence 478999999888884 588888888888777642 235555555554
No 498
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=38.88 E-value=69 Score=29.01 Aligned_cols=46 Identities=20% Similarity=0.331 Sum_probs=31.2
Q ss_pred CeEEEEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCC
Q 010824 394 KNVLLEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDI 440 (500)
Q Consensus 394 ~~~~v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~ 440 (500)
+..++.|....|++|++..+.+.+.....+. .++.+.-+.......
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~-~~~~~~~~~f~~~~~ 130 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGK-VRLVLREFPFLDPAC 130 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCC-CceEEEEeecCCCCc
Confidence 6788899999999998888888884444333 245555555544333
No 499
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=38.26 E-value=44 Score=26.12 Aligned_cols=76 Identities=9% Similarity=0.190 Sum_probs=42.3
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCCC----cCcceEEEEEcCCCceEE---e-cCCC
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTFE----VQGYPTVFFRSASGKTVP---Y-EGDR 469 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~----i~~~P~~~~~~~~~~~~~---~-~g~~ 469 (500)
..|+.+.|..|+.....|++- ++.|..+|+.+.+....++. ..+.+.--++...+...+ . ....
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~l 73 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA--------GIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPEL 73 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCC
Confidence 478899999999887666554 46666688776554432111 112112223322222111 0 1347
Q ss_pred CHHHHHHHHHhh
Q 010824 470 TKEDIVDFIENN 481 (500)
Q Consensus 470 ~~~~l~~~i~~~ 481 (500)
+.+++++.|.++
T Consensus 74 s~~e~i~ll~~~ 85 (112)
T cd03034 74 SDEELIDAMAAH 85 (112)
T ss_pred CHHHHHHHHHhC
Confidence 778888888765
No 500
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=37.93 E-value=44 Score=26.21 Aligned_cols=76 Identities=8% Similarity=0.139 Sum_probs=43.2
Q ss_pred EEEECCCChhHhhhhHHHHHHHHHcCCCCceEEEEEeCCCCCCCCCCC----CcCcceE-EEEEcCCCceEE-e--c-CC
Q 010824 398 LEFYAPWCGHCKKLAPILDEVAVSYQNDADVVIAKFDATANDIPGDTF----EVQGYPT-VFFRSASGKTVP-Y--E-GD 468 (500)
Q Consensus 398 v~f~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~i~~~P~-~~~~~~~~~~~~-~--~-g~ 468 (500)
.+|+.+.|..|+.....+++- ++.+-.+|+.+.+...+++ ...+.+. --++...+...+ . . ..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~--------~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~~~ 73 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK--------GIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSDPN 73 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC--------CCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCccC
Confidence 478999999999988777663 4666668887665553211 1122222 113433332111 1 1 24
Q ss_pred CCHHHHHHHHHhh
Q 010824 469 RTKEDIVDFIENN 481 (500)
Q Consensus 469 ~~~~~l~~~i~~~ 481 (500)
.+.+++++.|.++
T Consensus 74 ls~~e~i~~l~~~ 86 (114)
T TIGR00014 74 LSDQELLDAMVAH 86 (114)
T ss_pred CCHHHHHHHHHHC
Confidence 6777788777765
Done!