BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010825
(500 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 479 bits (1234), Expect = e-135, Method: Compositional matrix adjust.
Identities = 234/487 (48%), Positives = 316/487 (64%), Gaps = 10/487 (2%)
Query: 7 ACSKVHAVCIPSPSQSHIXXXXXXXXXXXXXGFHITFVNTEFNHRRFLKSRGEHSLGGLP 66
A K H V IP P Q HI GFHITFVNTE+NH+R LKSRG + G
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFT 64
Query: 67 SFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSC 126
F FE+IPDGL + +QD+ +LC+S+ N L P+ +LL +LN S+N P V+C
Sbjct: 65 DFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKN-FLKPYCELLTRLNHSTNV--PPVTC 121
Query: 127 IISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFPVDDKSCLTKEYL 186
++SD + FT+ AA++ LP VL F+ SACS + FR+F E+G+ P D+S LT L
Sbjct: 122 LVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCL 181
Query: 187 SRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQV 246
+DWIPG+K+ R++D+ F+R+T+ DIM +E + +K + I+++TF+ LE V
Sbjct: 182 ETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDV 241
Query: 247 LNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIY 306
+NALS P ++ IGPL LL Q + L+ + NL KE+TECL WL+SKEP SV+Y
Sbjct: 242 INALSSTIP-SIYPIGPLPSLLKQTPQIH-QLDSLDSNLWKEDTECLDWLESKEPGSVVY 299
Query: 307 VNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIAS 366
VNFGS +M +QL+E A GL N FLWIIRPDLV G + +EF + ++G IAS
Sbjct: 300 VNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNEIADRGLIAS 359
Query: 367 WCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLE 426
WCPQ++VLNHP+IGGF TH GWNST ES+CAGVPM+CWPF DQPT+CR+ CNEW +G+E
Sbjct: 360 WCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGME 419
Query: 427 IINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLV 486
I D V R E+ K + E++ G+KGK+M+ KA + K+ AEE T P G S NL K++
Sbjct: 420 I-----DTNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVI 474
Query: 487 NQVLLSE 493
VLL +
Sbjct: 475 KDVLLKQ 481
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 195/427 (45%), Gaps = 42/427 (9%)
Query: 65 LPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAV 124
LP+ ++ + DGLP S ++ L M H + +A+ + +
Sbjct: 66 LPNIKYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN-------I 118
Query: 125 SCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEK-GLFPVDDKSCLTK 183
+C+++D F F A+++ V L+T S + +EK G V D
Sbjct: 119 TCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHD------ 172
Query: 184 EYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATE-NASKASAIIIHTFDAL 242
+ ID +PG +++ DLP V D+ F + +A+A+ I++F +
Sbjct: 173 ---VKSIDVLPGFPELKASDLPEGV--IKDIDVPFATMLHKMGLELPRANAVAINSFATI 227
Query: 243 EQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPN 302
+ N L+ F L L +GP L Q + D E CL+WLD E +
Sbjct: 228 HPLIENELNSKFKL-LLNVGPFNLTTPQRKVSD-------------EHGCLEWLDQHENS 273
Query: 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKG 362
SV+Y++FGS++ +L +A L PF+W R D LP F + K KG
Sbjct: 274 SVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD----PKEKLPKGFLERTKTKG 329
Query: 363 FIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWG 422
I +W PQ E+L H ++G F THSGWNS +E + GVPMI PF GDQ N T +
Sbjct: 330 KIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESV-- 387
Query: 423 VGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNL 482
LEI G D+ +++ ++K + M EKG MR K K K A +A +G+SA +
Sbjct: 388 --LEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDF 445
Query: 483 EKLVNQV 489
L+ V
Sbjct: 446 TTLIQIV 452
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 169 bits (427), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 106/367 (28%), Positives = 172/367 (46%), Gaps = 30/367 (8%)
Query: 124 VSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEK-GLFPVDDKSCLT 182
VSC+++D F+ F A ++G+ + +T S +EK G+ + +
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGRE--- 169
Query: 183 KEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDAL 242
L+++IPGM +R RDL + + + + + KA+A+ I++F+ L
Sbjct: 170 ----DELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEEL 225
Query: 243 EQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPN 302
+ + N L L IGP L+ ++ T CLQWL ++P
Sbjct: 226 DDSLTNDLKSKLKTYL-NIGPFNLITPP-------------PVVPNTTGCLQWLKERKPT 271
Query: 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKG 362
SV+Y++FG++ +++ ++ L S PF+W +R LP F K + G
Sbjct: 272 SVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDK----ARVHLPEGFLEKTRGYG 327
Query: 363 FIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWG 422
+ W PQ EVL H A+G F TH GWNS ES+ GVP+IC PF GDQ N R +
Sbjct: 328 MVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLE 387
Query: 423 VGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNL 482
+G+ I G +++ + +++ EKGK++R + A+ A P GSS N
Sbjct: 388 IGVRIEGG----VFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENF 443
Query: 483 EKLVNQV 489
LV+ V
Sbjct: 444 ITLVDLV 450
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 145/498 (29%), Positives = 217/498 (43%), Gaps = 72/498 (14%)
Query: 12 HAVCIPSPSQSH-IXXXXXXXXXXXXXGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRF 70
H IPSP H I G +TFV GE G PS
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIA-----------GE----GPPSKAQ 52
Query: 71 EAIPDGLPAS-----------SDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNS 119
+ D LP+S +D SS+T+ + ++ + +P L K+ DS
Sbjct: 53 RTVLDSLPSSISSVFLPPVDLTDLSSSTRIESRISLTVTRS---NP---ELRKVFDSFVE 106
Query: 120 VNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFPVDDKS 179
+ ++ D F A + +P + + +A F E S
Sbjct: 107 GGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDET-------VS 159
Query: 180 CLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTF 239
C +E L+ +PG + +D + D KD + + T+ +A I+++TF
Sbjct: 160 CEFRELTEPLM--LPGCVPVAGKDF--LDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTF 215
Query: 240 DALEQQVLNALS--FIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLD 297
LE + AL + ++ +GPL + Q ++ EE+ECL+WLD
Sbjct: 216 FELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQ------------TEESECLKWLD 263
Query: 298 SKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIR-PDLV-----------TG 345
++ SV+YV+FGS + +QL E+A+GL +S FLW+IR P + T
Sbjct: 264 NQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTD 323
Query: 346 ETADLPAEFEVKAKEKGF-IASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICW 404
LP F + K++GF I W PQ +VL HP+ GGF TH GWNST+ES+ +G+P+I W
Sbjct: 324 PLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAW 383
Query: 405 PFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKW 464
P +Q N + L GDD V R EV + V+ LM GE+GK +RNK +
Sbjct: 384 PLYAEQKMNAVLLSEDIRAALR-PRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
Query: 465 KRFAEEATAPDGSSATNL 482
K A DG+S L
Sbjct: 443 KEAACRVLKDDGTSTKAL 460
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 178/377 (47%), Gaps = 41/377 (10%)
Query: 124 VSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFPVDDKSCLTK 183
V ++ D F + + G+P L T S F+ + K + + V D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT-SNVGFLSL--MLSLKNRQIEEVFDDSDRDH 171
Query: 184 EYLSRLIDWIPGMKD-IRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDAL 242
+ L+ IPG+ + + LP + D I + + E II++TF L
Sbjct: 172 QLLN-----IPGISNQVPSNVLPDACFNKDGGYIAY---YKLAERFRDTKGIIVNTFSDL 223
Query: 243 EQQVLNAL----SFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDS 298
EQ ++AL I P+ + +GPL L Q K L+ ++L+ L+WLD
Sbjct: 224 EQSSIDALYDHDEKIPPI--YAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLDE 272
Query: 299 KEPNSVIYVNFGSI-IIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE-- 355
+ SV+++ FGS+ + Q+ E+A+GL +S FLW + E P F
Sbjct: 273 QPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEW 327
Query: 356 VKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCR 415
++ + KG I W PQ EVL H AIGGF +H GWNS +ES+ GVP++ WP +Q N
Sbjct: 328 MELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAF 387
Query: 416 YTCNEWGVGLEI---INGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEAT 472
EWGVGL + G D V+ E+EK +++LM +K + K + K + A
Sbjct: 388 RLVKEWGVGLGLRVDYRKGSD-VVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAV 444
Query: 473 APDGSSATNLEKLVNQV 489
GSS ++ KL++ +
Sbjct: 445 VDGGSSLISVGKLIDDI 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 114/377 (30%), Positives = 178/377 (47%), Gaps = 41/377 (10%)
Query: 124 VSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFPVDDKSCLTK 183
V ++ D F + + G+P L T S F+ + K + + V D S
Sbjct: 115 VVGLVLDFFCVSMIDVGNEFGIPSYLFLT-SNVGFLSL--MLSLKNRQIEEVFDDSDRDH 171
Query: 184 EYLSRLIDWIPGMKD-IRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDAL 242
+ L+ IPG+ + + LP + D I + + E II++TF L
Sbjct: 172 QLLN-----IPGISNQVPSNVLPDACFNKDGGYIAY---YKLAERFRDTKGIIVNTFSDL 223
Query: 243 EQQVLNAL----SFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDS 298
EQ ++AL I P+ + +GPL L Q K L+ ++L+ L+WLD
Sbjct: 224 EQSSIDALYDHDEKIPPI--YAVGPLLDLKGQPNPK---LDQAQHDLI------LKWLDE 272
Query: 299 KEPNSVIYVNFGSI-IIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE-- 355
+ SV+++ FGS+ + Q+ E+A+GL +S FLW + E P F
Sbjct: 273 QPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWS-----NSAEKKVFPEGFLEW 327
Query: 356 VKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCR 415
++ + KG I W PQ EVL H AIGGF +H GWNS +ES+ GVP++ WP +Q N
Sbjct: 328 MELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAF 387
Query: 416 YTCNEWGVGLEI---INGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEAT 472
EWGVGL + G D V+ E+EK +++LM +K + K + K + A
Sbjct: 388 RLVKEWGVGLGLRVDYRKGSD-VVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAV 444
Query: 473 APDGSSATNLEKLVNQV 489
GSS ++ KL++ +
Sbjct: 445 VDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 367 WCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRY 416
W PQ ++L HP F TH G N E++ G+P + P DQP N +
Sbjct: 75 WIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAH 124
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 288 EETECLQWLDSKE-PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGE 346
E+ + WL S++ ++Y+ G+ + L GL + L P L
Sbjct: 227 EQGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSG 286
Query: 347 TADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPF 406
++PA ++ SW PQ +L H + H G +T+ +L AGVP + +P+
Sbjct: 287 LGEVPANVRLE--------SWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPW 336
Query: 407 LGD 409
GD
Sbjct: 337 AGD 339
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 364 IASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGV 423
+ W PQ ++L + F TH+G ST+E+L VPM+ P + +Q N E G+
Sbjct: 309 VHQWVPQLDILTKAS--AFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIV-ELGL 365
Query: 424 GLEI 427
G I
Sbjct: 366 GRHI 369
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 42/118 (35%), Gaps = 13/118 (11%)
Query: 295 WLDSKEPNSVIYVNFGSIIIMNKQQLIEV--AMGLVNSNHPFLWIIRPDLVTGETADLPA 352
W V+ V+ GS E A G + H L I R + E +LP
Sbjct: 225 WQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGR-KVTPAELGELPD 283
Query: 353 EFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQ 410
EV W PQ +L + F TH+G + E L PMI P DQ
Sbjct: 284 NVEVH--------DWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|4F2G|A Chain A, The Crystal Structure Of Ornithine Carbamoyltransferase
From Burkholderia Thailandensis E264
Length = 309
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 341 DLVTGET-ADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGV 399
DLVT + + E E +A+++ F A WC EE+++H F H E + AGV
Sbjct: 218 DLVTTDVWTSMGFEAENEARKRAF-ADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAGV 276
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 379 IGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIIN 429
+GG F + G ++ +E C G+P+I P+ + + + + G G E+ N
Sbjct: 283 VGGTFVNIGGHNLLEPTCWGIPVIYGPY-THKVNDLKEFLEKEGAGFEVKN 332
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 367 WCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVG 424
W P VL H TH + +E+ AGVP++ P + E G+G
Sbjct: 288 WIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLG 343
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 77 LPASSDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNS-VNPAVSCIISDGFLPF 135
+P ++D SS +++ S E N+ +H F+ LL K + ++P V C DGF
Sbjct: 98 IPGTTD-SSFGKEVVSY-EMPRPNIGIHRFVFLLFKQKKRGQAMLSPPVVC--RDGFNTR 153
Query: 136 TVTAAQQLGLPIVLLF 151
T +LGLP+ +F
Sbjct: 154 KFTQENELGLPVAAVF 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,403,408
Number of Sequences: 62578
Number of extensions: 584967
Number of successful extensions: 1311
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 25
length of query: 500
length of database: 14,973,337
effective HSP length: 103
effective length of query: 397
effective length of database: 8,527,803
effective search space: 3385537791
effective search space used: 3385537791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)