Query 010825
Match_columns 500
No_of_seqs 133 out of 1394
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010825.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010825hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.2E-67 2.6E-72 531.2 47.3 447 1-491 1-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 3.9E-67 8.5E-72 529.2 47.5 467 1-496 1-474 (480)
3 PLN02173 UDP-glucosyl transfer 100.0 4.9E-66 1.1E-70 517.0 46.6 441 9-490 4-447 (449)
4 PLN02562 UDP-glycosyltransfera 100.0 5.5E-66 1.2E-70 520.9 46.4 438 8-489 4-447 (448)
5 PLN02210 UDP-glucosyl transfer 100.0 6.2E-65 1.4E-69 513.6 47.0 444 8-490 6-454 (456)
6 PLN02207 UDP-glycosyltransfera 100.0 6.4E-65 1.4E-69 510.8 45.5 456 9-493 2-467 (468)
7 PLN02152 indole-3-acetate beta 100.0 1.8E-64 4E-69 506.5 45.7 438 10-489 3-454 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 100.0 3.2E-64 7E-69 509.8 46.6 463 1-492 1-472 (477)
9 PLN02992 coniferyl-alcohol glu 100.0 3E-64 6.6E-69 506.8 45.9 434 10-491 5-469 (481)
10 PLN02448 UDP-glycosyltransfera 100.0 2.2E-63 4.7E-68 505.9 46.8 446 8-492 8-458 (459)
11 PLN00164 glucosyltransferase; 100.0 2.1E-63 4.6E-68 505.6 46.6 447 8-492 1-474 (480)
12 PLN02670 transferase, transfer 100.0 2.3E-63 4.9E-68 500.1 44.9 451 8-493 4-467 (472)
13 PLN02764 glycosyltransferase f 100.0 1.1E-62 2.4E-67 491.1 46.6 436 8-497 3-451 (453)
14 PLN02534 UDP-glycosyltransfera 100.0 1E-62 2.2E-67 497.7 46.2 455 10-493 8-488 (491)
15 PLN03015 UDP-glucosyl transfer 100.0 1.5E-62 3.3E-67 491.5 46.1 443 9-489 2-466 (470)
16 PLN02554 UDP-glycosyltransfera 100.0 8.4E-63 1.8E-67 503.3 44.0 450 10-492 2-479 (481)
17 PLN03007 UDP-glucosyltransfera 100.0 1.8E-62 3.9E-67 501.6 46.0 457 7-492 2-481 (482)
18 PLN02208 glycosyltransferase f 100.0 3.5E-62 7.5E-67 490.4 43.3 422 8-492 2-440 (442)
19 PLN03004 UDP-glycosyltransfera 100.0 2.8E-62 6.2E-67 490.2 42.4 437 9-480 2-450 (451)
20 PLN02167 UDP-glycosyltransfera 100.0 7.4E-62 1.6E-66 495.6 45.4 454 9-493 2-474 (475)
21 PLN00414 glycosyltransferase f 100.0 3.9E-61 8.4E-66 483.4 44.2 423 10-495 4-444 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.3E-53 7.2E-58 433.9 28.7 418 10-493 20-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.3E-54 2.8E-59 452.0 -3.3 412 12-492 2-444 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 9.7E-43 2.1E-47 351.6 33.0 365 16-470 1-375 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.9E-42 4E-47 351.0 24.7 380 11-487 1-399 (401)
26 KOG1192 UDP-glucuronosyl and U 100.0 6.6E-43 1.4E-47 364.1 19.6 410 10-470 5-438 (496)
27 COG1819 Glycosyl transferases, 100.0 4.4E-40 9.6E-45 328.3 22.1 394 10-493 1-402 (406)
28 PRK12446 undecaprenyldiphospho 99.9 1.2E-23 2.7E-28 207.5 23.9 321 12-463 3-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 4.3E-23 9.2E-28 202.6 26.3 307 11-448 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 5.6E-21 1.2E-25 187.3 22.6 124 302-453 188-316 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 3.2E-20 7E-25 181.0 27.2 324 11-470 1-337 (357)
32 PRK00726 murG undecaprenyldiph 99.8 6.2E-18 1.4E-22 168.7 26.3 341 11-489 2-355 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.7E-16 5.9E-21 156.5 28.9 313 12-453 1-326 (350)
34 TIGR01133 murG undecaprenyldip 99.7 3.4E-14 7.4E-19 141.3 28.8 77 369-453 243-323 (348)
35 TIGR00215 lpxB lipid-A-disacch 99.7 6.7E-15 1.4E-19 147.5 22.3 167 301-487 190-384 (385)
36 PRK13609 diacylglycerol glucos 99.7 2.4E-14 5.1E-19 144.2 25.1 172 301-498 201-378 (380)
37 TIGR03590 PseG pseudaminic aci 99.6 5.8E-14 1.3E-18 134.2 23.5 103 303-416 171-278 (279)
38 PRK13608 diacylglycerol glucos 99.5 5.8E-12 1.3E-16 127.0 26.5 134 301-453 201-340 (391)
39 COG4671 Predicted glycosyl tra 99.5 7.6E-12 1.6E-16 116.7 23.8 137 301-452 218-366 (400)
40 PRK00025 lpxB lipid-A-disaccha 99.5 4.1E-12 8.9E-17 127.9 23.6 104 371-488 256-374 (380)
41 PLN02605 monogalactosyldiacylg 99.5 2.8E-11 6.2E-16 121.7 26.8 113 360-490 265-380 (382)
42 PF04101 Glyco_tran_28_C: Glyc 99.5 3.1E-15 6.8E-20 132.2 -3.1 137 304-453 1-146 (167)
43 TIGR03492 conserved hypothetic 99.4 1E-10 2.3E-15 117.4 23.8 134 302-453 205-366 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 3.5E-13 7.6E-18 115.2 1.5 130 13-156 1-133 (139)
45 cd03814 GT1_like_2 This family 99.3 6.8E-09 1.5E-13 103.2 32.0 157 303-488 197-362 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.3 1.6E-08 3.6E-13 104.5 32.5 137 304-463 264-413 (465)
47 COG3980 spsG Spore coat polysa 99.2 1.1E-09 2.4E-14 99.4 16.7 146 304-469 160-308 (318)
48 cd03823 GT1_ExpE7_like This fa 99.2 8.3E-08 1.8E-12 95.0 31.5 82 359-453 242-331 (359)
49 cd03794 GT1_wbuB_like This fam 99.1 4.9E-08 1.1E-12 97.6 28.1 131 302-453 219-367 (394)
50 cd03816 GT1_ALG1_like This fam 99.1 3.1E-07 6.8E-12 93.5 34.1 91 360-465 294-399 (415)
51 cd03808 GT1_cap1E_like This fa 99.1 3.1E-07 6.8E-12 90.5 32.5 136 302-453 187-331 (359)
52 TIGR00236 wecB UDP-N-acetylglu 99.1 2.1E-08 4.6E-13 100.4 23.7 156 303-487 198-363 (365)
53 cd03817 GT1_UGDG_like This fam 99.1 3.8E-07 8.2E-12 90.7 32.4 81 359-453 258-345 (374)
54 cd03801 GT1_YqgM_like This fam 99.1 9.4E-07 2E-11 87.3 33.8 83 358-453 254-343 (374)
55 PRK10307 putative glycosyl tra 99.1 2.3E-06 5E-11 87.2 36.5 114 360-491 284-407 (412)
56 cd03818 GT1_ExpC_like This fam 99.1 6.1E-07 1.3E-11 90.9 32.0 81 360-453 281-368 (396)
57 cd04962 GT1_like_5 This family 99.0 7.9E-07 1.7E-11 89.0 32.1 93 359-464 252-350 (371)
58 cd03800 GT1_Sucrose_synthase T 99.0 8E-07 1.7E-11 89.8 31.4 81 360-453 283-370 (398)
59 PRK05749 3-deoxy-D-manno-octul 99.0 7.2E-07 1.6E-11 91.3 30.6 80 363-453 305-390 (425)
60 PF04007 DUF354: Protein of un 99.0 2.8E-07 6.1E-12 89.4 25.6 138 288-449 166-308 (335)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 5.5E-08 1.2E-12 97.3 20.9 131 302-453 198-339 (363)
62 cd03825 GT1_wcfI_like This fam 99.0 1.4E-06 3.1E-11 86.7 30.6 111 359-489 243-362 (365)
63 cd03798 GT1_wlbH_like This fam 99.0 2.2E-06 4.7E-11 84.9 31.2 133 302-453 201-346 (377)
64 TIGR02468 sucrsPsyn_pln sucros 99.0 3.3E-06 7.1E-11 92.2 34.1 397 5-464 164-651 (1050)
65 cd03821 GT1_Bme6_like This fam 98.9 7.4E-06 1.6E-10 81.3 31.8 80 359-453 261-347 (375)
66 TIGR02472 sucr_P_syn_N sucrose 98.9 3.4E-06 7.4E-11 86.6 29.4 82 359-453 316-408 (439)
67 cd03795 GT1_like_4 This family 98.9 4.7E-06 1E-10 82.8 29.3 140 303-463 191-345 (357)
68 cd03805 GT1_ALG2_like This fam 98.8 1.4E-05 3.1E-10 80.7 31.7 91 359-463 279-377 (392)
69 TIGR03449 mycothiol_MshA UDP-N 98.8 1.9E-05 4.1E-10 80.2 32.6 91 360-463 283-381 (405)
70 cd03820 GT1_amsD_like This fam 98.8 9.5E-06 2.1E-10 79.5 29.2 81 360-453 235-321 (348)
71 cd03796 GT1_PIG-A_like This fa 98.8 2.7E-05 6E-10 78.9 31.9 79 359-452 249-334 (398)
72 cd05844 GT1_like_7 Glycosyltra 98.8 9.4E-06 2E-10 81.1 27.8 82 359-453 244-338 (367)
73 cd03822 GT1_ecORF704_like This 98.7 1.8E-05 3.8E-10 78.6 29.4 81 359-453 246-336 (366)
74 cd03802 GT1_AviGT4_like This f 98.7 8.7E-06 1.9E-10 80.1 26.4 127 305-451 173-308 (335)
75 PLN02846 digalactosyldiacylgly 98.7 3.2E-05 7E-10 78.5 29.8 73 364-452 288-364 (462)
76 cd03799 GT1_amsK_like This is 98.7 5.7E-05 1.2E-09 74.8 31.5 82 359-453 235-329 (355)
77 cd03819 GT1_WavL_like This fam 98.7 4.9E-05 1.1E-09 75.4 30.7 135 302-450 184-329 (355)
78 PRK09922 UDP-D-galactose:(gluc 98.7 2.9E-05 6.3E-10 77.5 28.7 131 303-453 180-326 (359)
79 cd04951 GT1_WbdM_like This fam 98.7 3.8E-05 8.3E-10 76.2 28.3 108 359-487 244-356 (360)
80 PRK14089 ipid-A-disaccharide s 98.6 8.1E-06 1.8E-10 79.9 22.2 160 303-485 168-344 (347)
81 cd03807 GT1_WbnK_like This fam 98.6 0.00024 5.3E-09 70.1 33.4 107 360-487 251-362 (365)
82 cd03811 GT1_WabH_like This fam 98.6 6.4E-05 1.4E-09 73.7 28.2 82 359-453 245-334 (353)
83 cd03812 GT1_CapH_like This fam 98.5 0.00019 4.2E-09 71.2 29.5 81 359-453 248-333 (358)
84 cd03806 GT1_ALG11_like This fa 98.5 0.00016 3.4E-09 73.7 29.2 81 359-453 304-394 (419)
85 cd04955 GT1_like_6 This family 98.5 0.00014 3E-09 72.4 28.0 126 305-453 195-332 (363)
86 cd03809 GT1_mtfB_like This fam 98.5 5.9E-05 1.3E-09 74.8 25.2 81 358-453 251-338 (365)
87 TIGR02470 sucr_synth sucrose s 98.5 0.00085 1.8E-08 72.1 34.6 77 360-449 619-707 (784)
88 COG1519 KdtA 3-deoxy-D-manno-o 98.5 0.00031 6.6E-09 68.8 27.9 322 13-464 51-400 (419)
89 TIGR02149 glgA_Coryne glycogen 98.5 0.00058 1.3E-08 68.8 31.4 137 304-453 202-354 (388)
90 PLN02275 transferase, transfer 98.5 0.00026 5.7E-09 71.0 28.4 75 360-449 286-371 (371)
91 PLN02949 transferase, transfer 98.4 0.00066 1.4E-08 69.8 29.6 111 359-490 334-455 (463)
92 TIGR03568 NeuC_NnaA UDP-N-acet 98.4 0.00017 3.7E-09 71.9 24.6 130 302-450 201-338 (365)
93 COG0381 WecB UDP-N-acetylgluco 98.4 8.6E-05 1.9E-09 71.9 20.9 160 302-489 204-372 (383)
94 TIGR03088 stp2 sugar transfera 98.3 0.0015 3.2E-08 65.6 30.5 81 360-453 255-340 (374)
95 PRK00654 glgA glycogen synthas 98.3 0.00045 9.8E-09 71.5 27.1 133 303-450 282-427 (466)
96 cd03792 GT1_Trehalose_phosphor 98.3 0.00039 8.4E-09 69.8 26.0 109 360-490 252-370 (372)
97 PRK15427 colanic acid biosynth 98.3 0.0011 2.5E-08 67.2 29.4 112 359-490 278-404 (406)
98 cd03804 GT1_wbaZ_like This fam 98.3 0.00011 2.4E-09 73.1 21.0 127 305-452 197-327 (351)
99 PLN00142 sucrose synthase 98.3 0.0016 3.4E-08 70.2 30.1 81 360-453 642-738 (815)
100 TIGR03087 stp1 sugar transfera 98.3 6.4E-05 1.4E-09 76.2 19.1 80 359-453 279-364 (397)
101 PRK01021 lpxB lipid-A-disaccha 98.3 0.0011 2.4E-08 68.7 27.4 198 240-469 369-590 (608)
102 PF02350 Epimerase_2: UDP-N-ac 98.3 4.8E-05 1E-09 75.1 17.0 131 300-452 178-319 (346)
103 KOG3349 Predicted glycosyltran 98.2 3.2E-06 7E-11 69.5 6.8 116 303-426 4-131 (170)
104 PRK15179 Vi polysaccharide bio 98.1 0.014 3E-07 62.8 33.7 94 359-464 573-673 (694)
105 cd04950 GT1_like_1 Glycosyltra 98.1 0.0071 1.5E-07 60.7 30.2 110 359-492 253-372 (373)
106 TIGR02095 glgA glycogen/starch 98.1 0.0024 5.3E-08 66.3 26.6 129 303-450 291-436 (473)
107 PF02684 LpxB: Lipid-A-disacch 98.1 0.0012 2.5E-08 65.3 22.4 166 301-478 183-364 (373)
108 TIGR02918 accessory Sec system 98.1 0.0015 3.3E-08 67.8 24.3 105 359-469 375-485 (500)
109 PLN02501 digalactosyldiacylgly 98.1 0.0011 2.4E-08 69.4 22.3 77 361-453 602-683 (794)
110 cd03791 GT1_Glycogen_synthase_ 98.0 0.0017 3.7E-08 67.5 24.2 134 303-451 296-442 (476)
111 PLN02316 synthase/transferase 98.0 0.024 5.2E-07 62.9 32.5 118 359-489 899-1031(1036)
112 PRK15484 lipopolysaccharide 1, 97.7 0.002 4.3E-08 64.9 17.9 115 358-491 255-377 (380)
113 COG5017 Uncharacterized conser 97.6 0.00062 1.3E-08 55.3 10.0 126 305-450 2-141 (161)
114 cd04946 GT1_AmsK_like This fam 97.6 0.0018 3.9E-08 65.8 16.0 84 360-453 289-379 (407)
115 cd04949 GT1_gtfA_like This fam 97.6 0.011 2.4E-07 59.1 21.3 101 359-469 260-364 (372)
116 PF13844 Glyco_transf_41: Glyc 97.6 0.0021 4.6E-08 64.9 15.0 137 301-453 283-432 (468)
117 PF00534 Glycos_transf_1: Glyc 97.5 0.0021 4.6E-08 56.5 13.4 82 359-453 72-160 (172)
118 COG0763 LpxB Lipid A disacchar 97.5 0.0068 1.5E-07 58.9 16.9 181 292-489 178-379 (381)
119 PRK09814 beta-1,6-galactofuran 97.3 0.0014 3E-08 64.7 10.1 110 359-487 206-331 (333)
120 PRK15490 Vi polysaccharide bio 97.1 0.48 1E-05 49.3 26.4 62 359-427 454-520 (578)
121 PF13692 Glyco_trans_1_4: Glyc 97.1 0.0024 5.1E-08 53.7 7.8 127 304-451 3-135 (135)
122 PLN02939 transferase, transfer 97.0 0.78 1.7E-05 50.6 28.8 83 360-450 837-930 (977)
123 COG1817 Uncharacterized protei 96.8 0.52 1.1E-05 44.6 25.6 104 19-154 8-114 (346)
124 cd01635 Glycosyltransferase_GT 96.7 0.15 3.1E-06 46.4 17.6 50 359-410 160-217 (229)
125 cd03813 GT1_like_3 This family 96.6 0.058 1.3E-06 56.0 15.1 82 359-453 353-444 (475)
126 PRK10017 colanic acid biosynth 96.5 1.2 2.6E-05 45.3 32.0 178 292-489 224-422 (426)
127 PF13477 Glyco_trans_4_2: Glyc 96.4 0.051 1.1E-06 45.7 11.3 103 12-152 1-107 (139)
128 TIGR02193 heptsyl_trn_I lipopo 96.3 0.38 8.1E-06 47.0 18.4 136 301-449 178-319 (319)
129 PF06722 DUF1205: Protein of u 96.3 0.004 8.8E-08 48.7 3.2 56 288-343 26-86 (97)
130 PRK10125 putative glycosyl tra 96.1 1.9 4.1E-05 43.7 28.4 114 305-445 243-365 (405)
131 PHA01633 putative glycosyl tra 96.1 0.09 1.9E-06 51.5 12.2 86 358-451 199-307 (335)
132 COG3914 Spy Predicted O-linked 95.8 0.23 4.9E-06 50.8 13.7 123 301-427 428-560 (620)
133 PRK14098 glycogen synthase; Pr 95.7 0.23 5E-06 51.7 14.0 132 304-450 308-450 (489)
134 KOG4626 O-linked N-acetylgluco 95.5 0.18 4E-06 51.7 11.8 119 301-427 757-887 (966)
135 PHA01630 putative group 1 glyc 95.3 0.44 9.4E-06 46.9 13.9 111 366-490 196-329 (331)
136 TIGR02201 heptsyl_trn_III lipo 95.1 3.7 8.1E-05 40.5 20.2 105 12-149 1-108 (344)
137 PF13524 Glyco_trans_1_2: Glyc 95.1 0.23 5E-06 38.4 9.0 82 385-486 9-91 (92)
138 PF01975 SurE: Survival protei 95.0 0.082 1.8E-06 47.4 7.2 41 11-52 1-41 (196)
139 PF13579 Glyco_trans_4_4: Glyc 95.0 0.087 1.9E-06 45.0 7.3 98 25-152 5-104 (160)
140 PF06258 Mito_fiss_Elm1: Mitoc 93.7 4.4 9.4E-05 39.4 16.2 57 369-427 221-280 (311)
141 TIGR02400 trehalose_OtsA alpha 91.5 1.7 3.7E-05 44.7 10.9 104 365-490 341-455 (456)
142 PRK13932 stationary phase surv 91.5 1.9 4.1E-05 40.4 10.1 41 9-51 4-44 (257)
143 PF12000 Glyco_trans_4_3: Gkyc 91.4 1.9 4.2E-05 37.6 9.4 93 36-151 1-95 (171)
144 PF13439 Glyco_transf_4: Glyco 91.2 0.9 1.9E-05 39.3 7.6 30 20-49 11-40 (177)
145 PF08660 Alg14: Oligosaccharid 90.7 1.3 2.8E-05 38.8 7.8 114 16-151 3-128 (170)
146 PRK13933 stationary phase surv 90.4 3.1 6.7E-05 38.9 10.4 39 11-51 1-39 (253)
147 TIGR02919 accessory Sec system 89.8 6.3 0.00014 40.3 13.0 138 301-469 282-427 (438)
148 KOG1250 Threonine/serine dehyd 89.2 7.4 0.00016 38.3 12.0 63 382-453 248-318 (457)
149 cd02067 B12-binding B12 bindin 89.2 4.1 8.9E-05 33.1 9.3 39 12-50 1-39 (119)
150 PRK02261 methylaspartate mutas 88.4 1.3 2.8E-05 37.3 5.8 46 8-53 1-46 (137)
151 cd03789 GT1_LPS_heptosyltransf 88.3 23 0.00051 33.6 20.2 45 12-56 1-47 (279)
152 TIGR00087 surE 5'/3'-nucleotid 88.3 5.2 0.00011 37.3 10.2 40 11-52 1-40 (244)
153 PRK13935 stationary phase surv 87.8 5.9 0.00013 37.0 10.3 40 11-52 1-40 (253)
154 TIGR03713 acc_sec_asp1 accesso 87.2 1.7 3.7E-05 45.5 7.1 92 360-469 409-507 (519)
155 cd03788 GT1_TPS Trehalose-6-Ph 87.0 3.1 6.6E-05 43.0 8.9 104 364-489 345-459 (460)
156 COG0496 SurE Predicted acid ph 85.4 6.3 0.00014 36.6 9.0 39 11-52 1-40 (252)
157 COG0438 RfaG Glycosyltransfera 85.3 35 0.00075 32.4 17.2 81 360-453 257-344 (381)
158 cd03793 GT1_Glycogen_synthase_ 85.0 3.7 8E-05 43.0 8.1 81 369-452 467-553 (590)
159 PF02441 Flavoprotein: Flavopr 84.9 1.5 3.2E-05 36.5 4.4 45 11-56 1-45 (129)
160 PRK10422 lipopolysaccharide co 84.4 11 0.00023 37.4 11.1 108 8-149 3-113 (352)
161 PRK00346 surE 5'(3')-nucleotid 84.0 11 0.00024 35.3 10.0 40 11-52 1-40 (250)
162 PRK14099 glycogen synthase; Pr 83.5 20 0.00043 37.4 12.9 41 8-48 1-47 (485)
163 COG1618 Predicted nucleotide k 83.2 5.2 0.00011 34.4 6.8 41 10-50 5-45 (179)
164 cd02070 corrinoid_protein_B12- 83.2 6.6 0.00014 35.4 8.2 43 9-51 81-123 (201)
165 PRK13934 stationary phase surv 83.0 16 0.00035 34.4 10.7 39 11-51 1-39 (266)
166 TIGR02398 gluc_glyc_Psyn gluco 82.9 40 0.00087 35.0 14.5 112 362-494 364-485 (487)
167 TIGR01007 eps_fam capsular exo 82.6 24 0.00052 31.7 11.8 39 11-49 17-57 (204)
168 PLN03063 alpha,alpha-trehalose 81.9 4.3 9.4E-05 44.9 7.6 100 372-493 371-479 (797)
169 TIGR03029 EpsG chain length de 81.5 23 0.00049 33.6 11.7 39 9-47 101-141 (274)
170 COG0859 RfaF ADP-heptose:LPS h 80.8 59 0.0013 31.9 16.0 104 11-149 2-107 (334)
171 PF04464 Glyphos_transf: CDP-G 80.6 3.2 6.8E-05 41.5 5.7 98 360-470 252-353 (369)
172 COG1703 ArgK Putative periplas 80.5 28 0.00062 33.2 11.3 43 9-51 50-92 (323)
173 PRK10916 ADP-heptose:LPS hepto 80.0 17 0.00037 35.9 10.7 103 11-149 1-106 (348)
174 KOG2941 Beta-1,4-mannosyltrans 78.2 37 0.0008 33.1 11.3 128 8-157 10-142 (444)
175 PRK11519 tyrosine kinase; Prov 78.0 34 0.00074 37.6 13.0 40 10-49 525-566 (719)
176 smart00851 MGS MGS-like domain 77.9 22 0.00047 27.2 8.5 28 27-56 2-29 (90)
177 PF02951 GSH-S_N: Prokaryotic 77.8 3.9 8.4E-05 33.4 4.3 39 11-49 1-42 (119)
178 COG2861 Uncharacterized protei 77.4 34 0.00074 31.4 10.4 39 103-149 137-178 (250)
179 PF05159 Capsule_synth: Capsul 76.7 9.1 0.0002 36.3 7.3 43 361-406 184-226 (269)
180 COG3640 CooC CO dehydrogenase 76.6 35 0.00075 31.5 10.2 42 11-52 1-43 (255)
181 PRK08305 spoVFB dipicolinate s 76.6 4.5 9.7E-05 36.2 4.7 44 9-52 4-47 (196)
182 cd00561 CobA_CobO_BtuR ATP:cor 76.4 46 0.001 28.7 10.7 33 12-44 4-36 (159)
183 cd00550 ArsA_ATPase Oxyanion-t 76.4 17 0.00036 34.2 8.8 43 13-56 3-45 (254)
184 PHA02542 41 41 helicase; Provi 75.5 7.9 0.00017 40.0 6.8 44 10-53 190-233 (473)
185 COG3660 Predicted nucleoside-d 75.3 73 0.0016 29.9 18.9 72 323-403 189-270 (329)
186 PRK13931 stationary phase surv 73.7 23 0.0005 33.4 8.8 29 23-51 12-43 (261)
187 COG2894 MinD Septum formation 73.4 6 0.00013 35.8 4.6 37 12-48 3-41 (272)
188 TIGR03018 pepcterm_TyrKin exop 72.8 72 0.0016 28.7 11.9 40 10-49 34-76 (207)
189 TIGR02655 circ_KaiC circadian 72.3 37 0.00081 35.3 11.0 48 8-55 261-308 (484)
190 PF02310 B12-binding: B12 bind 72.0 12 0.00025 30.3 5.9 39 11-49 1-39 (121)
191 COG4088 Predicted nucleotide k 71.3 62 0.0013 29.3 10.2 36 13-48 4-39 (261)
192 PRK10964 ADP-heptose:LPS hepto 71.2 21 0.00045 34.8 8.5 44 11-54 1-46 (322)
193 COG4370 Uncharacterized protei 71.2 6.9 0.00015 37.1 4.6 92 365-470 300-396 (412)
194 cd00532 MGS-like MGS-like doma 71.1 36 0.00079 27.3 8.5 32 23-56 10-41 (112)
195 COG1066 Sms Predicted ATP-depe 70.2 7.1 0.00015 38.8 4.7 43 10-53 93-135 (456)
196 PRK08506 replicative DNA helic 70.2 34 0.00075 35.4 10.1 46 9-54 191-236 (472)
197 COG0541 Ffh Signal recognition 70.1 32 0.0007 34.6 9.2 44 8-51 98-141 (451)
198 PRK14099 glycogen synthase; Pr 69.7 7.6 0.00016 40.4 5.2 87 359-453 349-449 (485)
199 TIGR00715 precor6x_red precorr 69.1 20 0.00044 33.7 7.4 34 11-49 1-34 (256)
200 TIGR02195 heptsyl_trn_II lipop 67.5 35 0.00077 33.3 9.3 102 12-149 1-105 (334)
201 PLN03064 alpha,alpha-trehalose 67.4 90 0.002 35.3 13.0 99 372-492 455-562 (934)
202 PRK10867 signal recognition pa 67.4 39 0.00084 34.5 9.5 43 10-52 100-143 (433)
203 PF04127 DFP: DNA / pantothena 67.4 5.2 0.00011 35.5 3.0 39 10-48 3-53 (185)
204 PRK14501 putative bifunctional 67.1 15 0.00032 40.5 7.1 111 364-492 346-463 (726)
205 PF12146 Hydrolase_4: Putative 66.7 16 0.00034 27.3 5.0 36 11-46 16-51 (79)
206 PRK05986 cob(I)alamin adenolsy 66.7 96 0.0021 27.7 11.8 102 8-134 20-126 (191)
207 cd01425 RPS2 Ribosomal protein 66.4 31 0.00068 30.8 7.8 33 122-154 126-160 (193)
208 CHL00175 minD septum-site dete 66.4 1.1E+02 0.0024 29.0 12.3 38 11-48 15-54 (281)
209 TIGR03878 thermo_KaiC_2 KaiC d 66.3 39 0.00085 31.8 8.9 42 9-50 35-76 (259)
210 TIGR00347 bioD dethiobiotin sy 66.1 71 0.0015 27.4 10.0 27 18-44 6-32 (166)
211 cd00984 DnaB_C DnaB helicase C 65.6 60 0.0013 29.9 10.0 47 9-55 12-59 (242)
212 PF00551 Formyl_trans_N: Formy 65.5 72 0.0016 28.1 10.0 27 11-40 1-27 (181)
213 PF02374 ArsA_ATPase: Anion-tr 65.1 30 0.00065 33.5 8.0 40 12-51 2-42 (305)
214 PRK00090 bioD dithiobiotin syn 64.6 58 0.0013 29.6 9.6 29 18-46 8-36 (222)
215 TIGR02370 pyl_corrinoid methyl 63.6 18 0.00038 32.6 5.7 46 9-54 83-128 (197)
216 PF07429 Glyco_transf_56: 4-al 63.6 1.3E+02 0.0028 29.6 11.6 81 360-450 245-332 (360)
217 PF02571 CbiJ: Precorrin-6x re 63.5 22 0.00047 33.3 6.4 33 11-49 1-33 (249)
218 TIGR02852 spore_dpaB dipicolin 63.3 12 0.00025 33.3 4.4 41 11-51 1-41 (187)
219 PF00448 SRP54: SRP54-type pro 62.6 56 0.0012 29.3 8.7 39 12-50 3-41 (196)
220 PRK13886 conjugal transfer pro 62.5 1.3E+02 0.0029 27.9 11.3 40 10-49 3-42 (241)
221 PRK06321 replicative DNA helic 62.5 60 0.0013 33.6 10.0 42 12-53 228-270 (472)
222 COG0552 FtsY Signal recognitio 62.4 64 0.0014 31.4 9.3 43 10-52 139-181 (340)
223 PRK07313 phosphopantothenoylcy 62.1 11 0.00024 33.4 4.0 43 11-54 2-44 (182)
224 PRK11823 DNA repair protein Ra 60.9 35 0.00076 35.1 8.0 44 10-53 80-123 (446)
225 COG0052 RpsB Ribosomal protein 60.7 62 0.0014 29.9 8.5 33 123-155 156-190 (252)
226 COG0859 RfaF ADP-heptose:LPS h 60.4 78 0.0017 31.0 10.2 100 10-153 175-279 (334)
227 PF06506 PrpR_N: Propionate ca 60.4 9.9 0.00021 33.4 3.4 69 375-451 33-124 (176)
228 cd01423 MGS_CPS_I_III Methylgl 60.0 69 0.0015 25.7 8.2 87 23-149 11-106 (116)
229 PF06925 MGDG_synth: Monogalac 59.1 21 0.00046 31.0 5.3 21 23-43 1-22 (169)
230 COG1484 DnaC DNA replication p 59.1 18 0.00039 34.0 5.1 48 9-56 104-151 (254)
231 PRK05920 aromatic acid decarbo 58.8 17 0.00036 32.8 4.6 45 10-55 3-47 (204)
232 cd01980 Chlide_reductase_Y Chl 58.6 42 0.00091 34.1 8.1 25 123-150 350-374 (416)
233 TIGR01005 eps_transp_fam exopo 58.3 93 0.002 34.5 11.3 39 11-49 546-586 (754)
234 COG0003 ArsA Predicted ATPase 57.9 1.2E+02 0.0026 29.6 10.6 40 11-50 2-42 (322)
235 PRK14098 glycogen synthase; Pr 57.7 18 0.00038 37.8 5.3 41 8-48 3-49 (489)
236 cd01965 Nitrogenase_MoFe_beta_ 57.5 40 0.00086 34.4 7.8 25 123-150 371-395 (428)
237 PF01075 Glyco_transf_9: Glyco 57.5 1.1E+02 0.0025 28.1 10.4 101 9-154 104-212 (247)
238 PRK10416 signal recognition pa 57.4 91 0.002 30.4 9.8 41 10-50 114-154 (318)
239 KOG0780 Signal recognition par 57.2 52 0.0011 32.7 7.8 41 11-51 102-142 (483)
240 cd02037 MRP-like MRP (Multiple 57.1 41 0.00088 29.1 6.8 35 14-48 4-38 (169)
241 TIGR00416 sms DNA repair prote 56.9 45 0.00099 34.3 8.0 44 10-53 94-137 (454)
242 TIGR01425 SRP54_euk signal rec 56.9 67 0.0014 32.7 9.0 40 11-50 101-140 (429)
243 TIGR00708 cobA cob(I)alamin ad 56.7 1.4E+02 0.003 26.2 11.1 35 10-44 5-39 (173)
244 cd02071 MM_CoA_mut_B12_BD meth 56.6 25 0.00054 28.7 5.0 40 12-51 1-40 (122)
245 cd01121 Sms Sms (bacterial rad 56.4 36 0.00078 34.0 7.0 44 10-53 82-125 (372)
246 cd03114 ArgK-like The function 56.4 1.2E+02 0.0027 25.6 10.8 36 13-48 2-37 (148)
247 PRK09841 cryptic autophosphory 56.3 1.1E+02 0.0025 33.6 11.5 40 10-49 530-571 (726)
248 PRK02797 4-alpha-L-fucosyltran 56.3 2E+02 0.0043 27.9 13.1 80 360-449 206-292 (322)
249 PF09314 DUF1972: Domain of un 56.1 1.3E+02 0.0028 26.7 9.6 42 25-74 21-62 (185)
250 PRK05636 replicative DNA helic 55.7 29 0.00062 36.3 6.4 44 10-53 265-309 (505)
251 PF02826 2-Hacid_dh_C: D-isome 55.4 57 0.0012 28.6 7.5 106 301-447 36-143 (178)
252 TIGR03880 KaiC_arch_3 KaiC dom 55.3 52 0.0011 30.0 7.5 47 9-55 15-61 (224)
253 cd02069 methionine_synthase_B1 54.9 31 0.00066 31.5 5.7 44 9-52 87-130 (213)
254 cd01421 IMPCH Inosine monophos 54.8 74 0.0016 28.2 7.8 44 25-80 11-56 (187)
255 PF04413 Glycos_transf_N: 3-De 54.5 34 0.00074 30.4 5.9 99 12-151 22-125 (186)
256 PF02142 MGS: MGS-like domain 54.3 39 0.00083 26.1 5.5 28 27-56 2-29 (95)
257 TIGR02113 coaC_strep phosphopa 53.8 18 0.00039 31.9 3.9 43 11-54 1-43 (177)
258 TIGR00959 ffh signal recogniti 53.8 83 0.0018 32.1 9.1 42 11-52 100-142 (428)
259 cd01424 MGS_CPS_II Methylglyox 53.6 1.1E+02 0.0024 24.2 9.2 84 22-149 10-100 (110)
260 cd01974 Nitrogenase_MoFe_beta 53.4 1.2E+02 0.0027 30.9 10.6 25 123-150 377-401 (435)
261 PRK06029 3-octaprenyl-4-hydrox 53.0 21 0.00046 31.7 4.2 44 11-55 2-46 (185)
262 TIGR00421 ubiX_pad polyprenyl 52.4 18 0.00039 32.0 3.7 42 12-54 1-42 (181)
263 PRK12311 rpsB 30S ribosomal pr 52.1 71 0.0015 31.2 7.9 33 123-155 152-186 (326)
264 PF01075 Glyco_transf_9: Glyco 52.1 47 0.001 30.7 6.8 94 301-404 104-208 (247)
265 PF01210 NAD_Gly3P_dh_N: NAD-d 51.9 11 0.00024 32.4 2.3 32 12-48 1-32 (157)
266 PRK05647 purN phosphoribosylgl 51.8 1.4E+02 0.0031 26.8 9.5 34 11-47 2-37 (200)
267 PRK12342 hypothetical protein; 51.7 27 0.00058 32.8 4.9 31 123-153 109-145 (254)
268 COG2109 BtuR ATP:corrinoid ade 51.6 1.8E+02 0.0038 26.0 10.0 99 11-134 29-133 (198)
269 TIGR03877 thermo_KaiC_1 KaiC d 51.4 1.8E+02 0.004 26.7 10.6 48 8-55 19-66 (237)
270 PRK07773 replicative DNA helic 50.5 71 0.0015 36.1 8.8 46 10-55 217-263 (886)
271 PF08323 Glyco_transf_5: Starc 50.4 23 0.0005 33.0 4.4 25 24-48 19-43 (245)
272 cd03789 GT1_LPS_heptosyltransf 50.2 1.7E+02 0.0036 27.6 10.4 45 11-55 122-170 (279)
273 TIGR02015 BchY chlorophyllide 49.5 1.1E+02 0.0023 31.3 9.3 31 12-47 287-317 (422)
274 COG2185 Sbm Methylmalonyl-CoA 49.4 37 0.00081 28.6 4.9 41 9-49 11-51 (143)
275 COG1797 CobB Cobyrinic acid a, 49.0 22 0.00048 35.8 4.0 30 20-49 11-41 (451)
276 cd07039 TPP_PYR_POX Pyrimidine 48.7 1.5E+02 0.0033 25.5 9.0 26 380-405 65-96 (164)
277 CHL00072 chlL photochlorophyll 48.6 32 0.00069 33.0 5.1 39 11-49 1-39 (290)
278 PF00862 Sucrose_synth: Sucros 48.0 21 0.00046 36.6 3.8 116 21-153 296-433 (550)
279 TIGR01285 nifN nitrogenase mol 47.2 91 0.002 31.9 8.4 88 9-150 310-397 (432)
280 TIGR03499 FlhF flagellar biosy 47.0 97 0.0021 29.6 8.1 40 11-50 195-236 (282)
281 cd02032 Bchl_like This family 46.6 33 0.00072 32.3 4.9 38 11-48 1-38 (267)
282 TIGR01281 DPOR_bchL light-inde 46.5 34 0.00074 32.2 4.9 37 11-47 1-37 (268)
283 TIGR01501 MthylAspMutase methy 46.4 53 0.0011 27.4 5.3 44 10-53 1-44 (134)
284 cd07038 TPP_PYR_PDC_IPDC_like 45.8 98 0.0021 26.7 7.3 26 380-405 61-92 (162)
285 TIGR02699 archaeo_AfpA archaeo 45.7 34 0.00073 30.1 4.3 42 12-54 1-44 (174)
286 KOG0853 Glycosyltransferase [C 45.4 19 0.00042 37.0 3.1 58 390-462 381-441 (495)
287 TIGR00521 coaBC_dfp phosphopan 45.3 30 0.00066 34.8 4.5 46 9-55 2-47 (390)
288 COG2910 Putative NADH-flavin r 45.0 21 0.00045 31.5 2.8 36 11-50 1-36 (211)
289 TIGR02700 flavo_MJ0208 archaeo 44.6 35 0.00076 31.6 4.5 44 12-55 1-46 (234)
290 PRK05579 bifunctional phosphop 44.4 40 0.00087 34.0 5.2 47 8-55 4-50 (399)
291 TIGR00345 arsA arsenite-activa 44.4 1.1E+02 0.0023 29.3 7.9 23 28-50 3-25 (284)
292 PF00282 Pyridoxal_deC: Pyrido 44.3 41 0.00088 33.7 5.2 71 379-451 104-191 (373)
293 PRK09620 hypothetical protein; 44.1 38 0.00083 31.2 4.7 39 9-47 2-52 (229)
294 TIGR00639 PurN phosphoribosylg 43.5 2.1E+02 0.0046 25.4 9.2 34 11-47 1-36 (190)
295 PF09001 DUF1890: Domain of un 43.5 36 0.00078 28.3 3.8 35 22-56 11-45 (139)
296 TIGR01283 nifE nitrogenase mol 43.1 2.2E+02 0.0048 29.3 10.6 25 123-150 395-419 (456)
297 COG2120 Uncharacterized protei 42.9 45 0.00098 30.9 5.0 44 3-46 3-46 (237)
298 PRK12446 undecaprenyldiphospho 42.8 63 0.0014 32.0 6.3 96 303-404 3-120 (352)
299 PRK06067 flagellar accessory p 42.7 52 0.0011 30.3 5.4 45 9-53 24-68 (234)
300 cd01018 ZntC Metal binding pro 42.5 2.2E+02 0.0047 26.8 9.7 44 104-153 204-249 (266)
301 PRK06732 phosphopantothenate-- 42.5 32 0.0007 31.7 3.9 20 27-46 29-48 (229)
302 PF02585 PIG-L: GlcNAc-PI de-N 42.0 81 0.0018 25.7 6.0 21 26-46 13-33 (128)
303 PRK12475 thiamine/molybdopteri 41.9 1.3E+02 0.0028 29.6 8.3 36 8-48 22-58 (338)
304 PRK03359 putative electron tra 41.9 44 0.00095 31.4 4.7 31 123-153 112-148 (256)
305 PF05225 HTH_psq: helix-turn-h 41.6 53 0.0011 21.4 3.7 25 437-464 1-26 (45)
306 PRK05632 phosphate acetyltrans 41.5 3.4E+02 0.0074 29.7 12.1 35 12-46 4-39 (684)
307 COG2099 CobK Precorrin-6x redu 41.5 1.1E+02 0.0023 28.6 6.9 38 104-150 56-99 (257)
308 PF03808 Glyco_tran_WecB: Glyc 41.5 2.4E+02 0.0052 24.5 10.9 92 25-149 35-131 (172)
309 COG0489 Mrp ATPases involved i 41.4 84 0.0018 29.7 6.6 46 11-56 57-104 (265)
310 PRK13604 luxD acyl transferase 41.0 61 0.0013 31.3 5.6 37 9-45 35-71 (307)
311 PRK04885 ppnK inorganic polyph 40.8 55 0.0012 30.9 5.2 54 376-452 35-94 (265)
312 TIGR00355 purH phosphoribosyla 40.8 1.2E+02 0.0026 31.4 7.8 86 25-132 11-100 (511)
313 PRK14478 nitrogenase molybdenu 40.4 69 0.0015 33.2 6.4 25 123-150 393-417 (475)
314 TIGR00750 lao LAO/AO transport 40.3 3E+02 0.0065 26.5 10.5 41 9-49 33-73 (300)
315 PRK13982 bifunctional SbtC-lik 40.2 40 0.00086 34.8 4.4 41 8-48 254-306 (475)
316 PRK11199 tyrA bifunctional cho 40.1 2.7E+02 0.0059 27.8 10.4 34 9-47 97-131 (374)
317 PRK04328 hypothetical protein; 40.1 3.1E+02 0.0068 25.5 11.7 47 9-55 22-68 (249)
318 PRK02155 ppnK NAD(+)/NADH kina 39.7 66 0.0014 30.9 5.7 57 373-452 60-120 (291)
319 COG2874 FlaH Predicted ATPases 39.5 57 0.0012 29.7 4.7 37 20-56 38-75 (235)
320 PRK01077 cobyrinic acid a,c-di 39.4 1.8E+02 0.0038 30.0 9.1 35 12-46 5-40 (451)
321 TIGR00379 cobB cobyrinic acid 38.9 1E+02 0.0022 31.8 7.2 27 20-46 10-36 (449)
322 cd01141 TroA_d Periplasmic bin 38.8 41 0.00089 29.5 4.0 38 104-151 60-99 (186)
323 PRK10490 sensor protein KdpD; 38.8 55 0.0012 37.0 5.8 40 9-48 23-62 (895)
324 PRK06249 2-dehydropantoate 2-r 38.8 40 0.00087 32.7 4.2 36 8-48 3-38 (313)
325 KOG1209 1-Acyl dihydroxyaceton 38.7 37 0.0008 30.7 3.4 39 1-45 1-39 (289)
326 TIGR02193 heptsyl_trn_I lipopo 38.4 3.4E+02 0.0073 26.1 10.7 99 9-152 178-281 (319)
327 PRK14077 pnk inorganic polypho 38.4 64 0.0014 30.9 5.3 58 372-452 60-121 (287)
328 TIGR02195 heptsyl_trn_II lipop 38.4 1.9E+02 0.0041 28.2 8.9 96 301-404 173-276 (334)
329 PRK13789 phosphoribosylamine-- 38.0 99 0.0021 31.6 7.0 35 10-49 4-38 (426)
330 PRK09302 circadian clock prote 37.5 3.9E+02 0.0085 28.0 11.6 47 9-55 272-318 (509)
331 PF08433 KTI12: Chromatin asso 37.4 3.4E+02 0.0073 25.7 10.0 36 13-48 4-39 (270)
332 PLN02929 NADH kinase 37.2 54 0.0012 31.6 4.6 67 375-452 63-138 (301)
333 PRK05579 bifunctional phosphop 37.0 3.2E+02 0.0069 27.6 10.3 139 302-450 7-182 (399)
334 PRK10422 lipopolysaccharide co 36.8 2.7E+02 0.0059 27.3 9.9 97 302-404 183-287 (352)
335 TIGR00313 cobQ cobyric acid sy 36.8 4.5E+02 0.0099 27.3 11.7 28 20-47 9-36 (475)
336 PF05693 Glycogen_syn: Glycoge 36.6 43 0.00094 35.4 4.1 36 125-160 143-181 (633)
337 PTZ00318 NADH dehydrogenase-li 36.3 42 0.00091 34.2 4.0 44 1-49 1-44 (424)
338 TIGR03371 cellulose_yhjQ cellu 36.1 3.4E+02 0.0074 24.8 12.3 33 17-49 9-41 (246)
339 PF07355 GRDB: Glycine/sarcosi 36.0 59 0.0013 31.8 4.6 28 123-150 80-117 (349)
340 PF04244 DPRP: Deoxyribodipyri 35.6 46 0.001 30.6 3.7 26 23-48 47-72 (224)
341 cd02034 CooC The accessory pro 35.5 87 0.0019 25.3 5.0 37 12-48 1-37 (116)
342 PRK13982 bifunctional SbtC-lik 35.3 56 0.0012 33.8 4.6 45 10-55 70-114 (475)
343 COG0801 FolK 7,8-dihydro-6-hyd 35.1 74 0.0016 27.4 4.6 29 304-332 3-31 (160)
344 cd02065 B12-binding_like B12 b 34.9 86 0.0019 25.2 5.0 39 13-51 2-40 (125)
345 PRK14477 bifunctional nitrogen 34.5 1.9E+02 0.0041 32.9 9.0 26 123-151 389-414 (917)
346 PRK11914 diacylglycerol kinase 34.3 2.2E+02 0.0048 27.4 8.5 81 304-406 12-96 (306)
347 PRK10916 ADP-heptose:LPS hepto 34.3 2E+02 0.0044 28.2 8.5 96 301-404 179-286 (348)
348 PF01695 IstB_IS21: IstB-like 34.3 70 0.0015 28.1 4.6 46 9-54 46-91 (178)
349 PF06506 PrpR_N: Propionate ca 33.8 59 0.0013 28.5 4.1 113 22-153 17-152 (176)
350 PF02572 CobA_CobO_BtuR: ATP:c 33.8 2.1E+02 0.0046 25.0 7.4 99 11-134 4-107 (172)
351 PRK10964 ADP-heptose:LPS hepto 33.6 2.3E+02 0.005 27.4 8.7 136 303-450 179-321 (322)
352 PRK13768 GTPase; Provisional 33.3 1.3E+02 0.0028 28.1 6.5 37 12-48 4-40 (253)
353 KOG0069 Glyoxylate/hydroxypyru 33.3 3.9E+02 0.0085 26.2 9.7 105 301-446 162-268 (336)
354 PTZ00345 glycerol-3-phosphate 33.2 3.2E+02 0.0068 27.3 9.4 36 8-48 9-51 (365)
355 COG0287 TyrA Prephenate dehydr 32.8 3.3E+02 0.0072 26.0 9.2 41 10-55 3-43 (279)
356 PRK06932 glycerate dehydrogena 32.7 2.3E+02 0.005 27.5 8.3 99 302-446 148-248 (314)
357 PRK02649 ppnK inorganic polyph 32.5 91 0.002 30.2 5.4 56 374-452 66-125 (305)
358 TIGR00853 pts-lac PTS system, 32.5 1.2E+02 0.0026 23.5 5.1 39 9-47 2-40 (95)
359 PRK12921 2-dehydropantoate 2-r 32.4 74 0.0016 30.5 4.9 33 11-48 1-33 (305)
360 PRK06487 glycerate dehydrogena 32.4 2E+02 0.0044 27.9 7.9 99 302-447 149-249 (317)
361 PRK13057 putative lipid kinase 32.3 88 0.0019 29.9 5.3 30 375-406 49-82 (287)
362 PF04558 tRNA_synt_1c_R1: Glut 32.2 44 0.00096 29.0 2.9 32 411-452 102-133 (164)
363 PRK01911 ppnK inorganic polyph 32.2 95 0.0021 29.9 5.4 58 372-452 60-121 (292)
364 PRK06719 precorrin-2 dehydroge 32.0 76 0.0017 27.2 4.4 37 7-48 10-46 (157)
365 PRK03378 ppnK inorganic polyph 32.0 85 0.0018 30.2 5.1 58 372-452 59-120 (292)
366 KOG0781 Signal recognition par 32.0 84 0.0018 32.2 5.0 44 8-51 376-419 (587)
367 COG3195 Uncharacterized protei 31.9 2.2E+02 0.0047 24.6 6.7 95 368-469 63-164 (176)
368 cd07025 Peptidase_S66 LD-Carbo 31.8 98 0.0021 29.6 5.5 75 314-407 45-121 (282)
369 PRK06522 2-dehydropantoate 2-r 31.5 61 0.0013 31.1 4.1 31 11-46 1-31 (304)
370 PRK06849 hypothetical protein; 31.4 92 0.002 31.3 5.5 36 9-48 3-38 (389)
371 COG1052 LdhA Lactate dehydroge 31.4 2.7E+02 0.0059 27.2 8.5 104 302-447 147-252 (324)
372 PF13450 NAD_binding_8: NAD(P) 31.2 60 0.0013 23.3 3.0 22 27-48 8-29 (68)
373 PF14626 RNase_Zc3h12a_2: Zc3h 31.0 51 0.0011 26.6 2.7 30 24-53 9-38 (122)
374 PRK03372 ppnK inorganic polyph 30.9 85 0.0018 30.4 4.9 57 373-452 69-129 (306)
375 PRK01231 ppnK inorganic polyph 30.6 1.1E+02 0.0023 29.5 5.5 55 375-452 61-119 (295)
376 PF13419 HAD_2: Haloacid dehal 30.6 3E+02 0.0066 23.0 8.2 27 123-150 150-176 (176)
377 cd01968 Nitrogenase_NifE_I Nit 30.3 3E+02 0.0066 27.8 9.1 25 123-150 356-380 (410)
378 PLN02935 Bifunctional NADH kin 30.2 87 0.0019 32.5 5.0 55 375-452 261-319 (508)
379 PF07905 PucR: Purine cataboli 30.2 3E+02 0.0065 22.3 7.9 43 291-337 35-78 (123)
380 PF01024 Colicin: Colicin pore 30.1 82 0.0018 27.8 4.1 43 451-499 28-70 (187)
381 PRK04539 ppnK inorganic polyph 30.1 95 0.0021 29.9 5.0 58 372-452 64-125 (296)
382 PRK13011 formyltetrahydrofolat 30.0 4.9E+02 0.011 24.9 9.8 103 8-151 87-194 (286)
383 TIGR02853 spore_dpaA dipicolin 30.0 5E+02 0.011 24.8 19.9 106 302-427 152-260 (287)
384 PF02780 Transketolase_C: Tran 29.9 82 0.0018 25.6 4.1 37 8-46 7-43 (124)
385 PLN02470 acetolactate synthase 29.9 83 0.0018 33.7 5.1 80 320-405 16-109 (585)
386 COG0467 RAD55 RecA-superfamily 29.9 1.3E+02 0.0028 28.1 6.0 49 8-56 21-69 (260)
387 PRK08410 2-hydroxyacid dehydro 29.9 3E+02 0.0066 26.6 8.6 102 301-447 145-248 (311)
388 KOG3339 Predicted glycosyltran 29.8 1.5E+02 0.0033 26.2 5.6 26 11-37 39-64 (211)
389 PRK14619 NAD(P)H-dependent gly 29.7 69 0.0015 31.0 4.1 34 9-47 3-36 (308)
390 PLN02496 probable phosphopanto 29.6 71 0.0015 28.9 3.8 46 8-55 17-62 (209)
391 PRK00881 purH bifunctional pho 29.2 2.3E+02 0.0049 29.6 7.7 45 24-80 14-60 (513)
392 COG1422 Predicted membrane pro 29.1 1.7E+02 0.0038 26.1 6.0 81 390-488 24-106 (201)
393 cd01017 AdcA Metal binding pro 29.0 4.4E+02 0.0095 25.0 9.5 43 105-153 208-252 (282)
394 cd02040 NifH NifH gene encodes 29.0 97 0.0021 29.0 5.0 37 12-48 3-39 (270)
395 cd02033 BchX Chlorophyllide re 28.8 1.3E+02 0.0028 29.5 5.8 43 8-50 29-71 (329)
396 PRK15438 erythronate-4-phospha 28.8 3.4E+02 0.0073 27.2 8.8 100 302-446 117-222 (378)
397 PRK08535 translation initiatio 28.7 1.5E+02 0.0032 28.8 6.2 31 123-153 195-231 (310)
398 PRK13059 putative lipid kinase 28.7 2.7E+02 0.0059 26.6 8.1 29 376-406 56-90 (295)
399 PRK13236 nitrogenase reductase 28.5 1E+02 0.0022 29.7 5.0 35 13-47 9-43 (296)
400 PRK13234 nifH nitrogenase redu 28.3 1.1E+02 0.0025 29.3 5.3 37 12-48 6-42 (295)
401 TIGR00511 ribulose_e2b2 ribose 28.3 1.5E+02 0.0032 28.7 6.1 31 123-153 190-226 (301)
402 PRK08978 acetolactate synthase 28.2 4.7E+02 0.01 27.7 10.4 116 305-450 393-513 (548)
403 COG1154 Dxs Deoxyxylulose-5-ph 28.0 4.4E+02 0.0096 28.1 9.5 116 291-449 491-622 (627)
404 PRK14569 D-alanyl-alanine synt 28.0 1.2E+02 0.0026 29.1 5.4 38 9-46 2-43 (296)
405 CHL00076 chlB photochlorophyll 27.9 84 0.0018 33.0 4.6 26 123-151 374-399 (513)
406 cd06320 PBP1_allose_binding Pe 27.9 4.3E+02 0.0093 24.4 9.3 28 123-150 57-88 (275)
407 PF01497 Peripla_BP_2: Peripla 27.9 81 0.0017 28.7 4.1 32 123-154 60-93 (238)
408 PRK07313 phosphopantothenoylcy 27.8 4.2E+02 0.0092 23.3 10.5 78 371-450 72-179 (182)
409 PRK06276 acetolactate synthase 27.7 4.7E+02 0.01 27.9 10.4 59 382-450 470-531 (586)
410 PRK13869 plasmid-partitioning 27.7 1.1E+02 0.0024 31.0 5.3 39 10-48 120-160 (405)
411 TIGR01761 thiaz-red thiazoliny 27.6 4.5E+02 0.0098 25.9 9.4 96 322-427 16-120 (343)
412 cd01983 Fer4_NifH The Fer4_Nif 27.4 1.4E+02 0.0031 22.1 4.9 33 13-45 2-34 (99)
413 TIGR01968 minD_bact septum sit 27.4 4.9E+02 0.011 23.9 10.6 32 17-48 9-40 (261)
414 COG0503 Apt Adenine/guanine ph 27.4 1.3E+02 0.0027 26.6 5.0 28 123-150 53-82 (179)
415 cd00861 ProRS_anticodon_short 27.4 1.2E+02 0.0026 22.8 4.5 35 11-45 2-38 (94)
416 PRK06027 purU formyltetrahydro 27.4 5.5E+02 0.012 24.5 10.0 112 3-153 82-196 (286)
417 cd01125 repA Hexameric Replica 27.2 1.8E+02 0.0038 26.8 6.3 38 14-51 5-54 (239)
418 cd01976 Nitrogenase_MoFe_alpha 27.0 73 0.0016 32.5 3.9 26 123-151 369-394 (421)
419 PF00070 Pyr_redox: Pyridine n 26.8 94 0.002 22.8 3.6 23 26-48 10-32 (80)
420 PRK02910 light-independent pro 26.8 91 0.002 32.8 4.7 26 123-151 362-387 (519)
421 TIGR00640 acid_CoA_mut_C methy 26.8 1.8E+02 0.0038 24.2 5.5 40 10-49 2-41 (132)
422 COG1348 NifH Nitrogenase subun 26.8 1.3E+02 0.0028 27.9 4.8 41 12-52 3-43 (278)
423 PF03796 DnaB_C: DnaB-like hel 26.7 1.6E+02 0.0035 27.5 6.0 42 12-53 21-63 (259)
424 PRK13185 chlL protochlorophyll 26.7 1.1E+02 0.0025 28.7 5.0 37 12-48 4-40 (270)
425 COG0299 PurN Folate-dependent 26.5 1.8E+02 0.004 25.9 5.7 28 123-150 29-56 (200)
426 TIGR00064 ftsY signal recognit 26.4 1.5E+02 0.0033 28.1 5.7 39 11-49 73-111 (272)
427 PRK04761 ppnK inorganic polyph 26.4 54 0.0012 30.6 2.6 27 377-405 26-56 (246)
428 PRK09107 acetolactate synthase 26.3 7.6E+02 0.016 26.5 11.6 119 303-450 420-542 (595)
429 PRK07206 hypothetical protein; 26.2 2E+02 0.0043 29.1 7.0 33 11-48 3-35 (416)
430 cd06559 Endonuclease_V Endonuc 26.1 60 0.0013 29.4 2.7 40 104-150 81-127 (208)
431 TIGR01990 bPGM beta-phosphoglu 26.1 2.5E+02 0.0055 24.2 6.9 24 27-50 92-115 (185)
432 PF01297 TroA: Periplasmic sol 26.0 2E+02 0.0043 26.8 6.5 44 104-153 186-231 (256)
433 TIGR00147 lipid kinase, YegS/R 25.9 1.8E+02 0.0039 27.8 6.3 28 377-406 58-91 (293)
434 PF02558 ApbA: Ketopantoate re 25.9 1E+02 0.0022 25.9 4.1 28 28-55 11-38 (151)
435 KOG2825 Putative arsenite-tran 25.9 1.6E+02 0.0035 27.5 5.4 40 11-50 19-59 (323)
436 TIGR01278 DPOR_BchB light-inde 25.8 99 0.0022 32.4 4.7 26 123-151 364-389 (511)
437 TIGR01918 various_sel_PB selen 25.8 1E+02 0.0023 31.0 4.5 44 382-427 348-393 (431)
438 TIGR01917 gly_red_sel_B glycin 25.7 1E+02 0.0023 31.0 4.5 44 382-427 348-393 (431)
439 PF04493 Endonuclease_5: Endon 25.7 91 0.002 28.2 3.8 41 104-151 77-124 (206)
440 PRK07688 thiamine/molybdopteri 25.7 3.4E+02 0.0073 26.8 8.1 36 8-48 22-58 (339)
441 KOG0081 GTPase Rab27, small G 25.6 1.6E+02 0.0035 25.2 4.9 48 107-156 110-167 (219)
442 PRK05973 replicative DNA helic 25.6 1.9E+02 0.0041 26.9 6.0 47 9-55 63-109 (237)
443 PLN02240 UDP-glucose 4-epimera 25.6 1.1E+02 0.0024 29.9 4.9 33 10-46 5-37 (352)
444 TIGR01380 glut_syn glutathione 25.5 79 0.0017 30.7 3.7 40 11-50 1-43 (312)
445 TIGR01668 YqeG_hyp_ppase HAD s 25.5 4.4E+02 0.0095 22.7 8.6 22 27-48 48-69 (170)
446 PF02702 KdpD: Osmosensitive K 25.5 1.5E+02 0.0033 26.7 5.0 40 9-48 4-43 (211)
447 PRK06718 precorrin-2 dehydroge 25.4 5E+02 0.011 23.3 12.6 151 295-471 5-165 (202)
448 PRK12828 short chain dehydroge 25.3 1.3E+02 0.0029 27.1 5.1 36 8-47 5-40 (239)
449 cd01981 Pchlide_reductase_B Pc 25.2 1.1E+02 0.0023 31.3 4.8 26 123-151 370-395 (430)
450 PF12695 Abhydrolase_5: Alpha/ 25.1 1.4E+02 0.003 24.4 4.8 34 13-46 1-34 (145)
451 cd01147 HemV-2 Metal binding p 25.0 1E+02 0.0022 28.7 4.3 37 106-152 67-106 (262)
452 PLN02891 IMP cyclohydrolase 25.0 3E+02 0.0065 28.8 7.6 47 22-80 30-78 (547)
453 PRK15116 sulfur acceptor prote 25.0 2.1E+02 0.0045 27.1 6.3 35 9-48 29-64 (268)
454 PRK13695 putative NTPase; Prov 25.0 4.5E+02 0.0097 22.6 8.7 34 11-44 1-34 (174)
455 PRK08335 translation initiatio 24.9 1.4E+02 0.0029 28.5 5.0 31 123-153 184-220 (275)
456 PF08006 DUF1700: Protein of u 24.9 2.4E+02 0.0052 24.7 6.4 47 436-482 1-47 (181)
457 PLN00016 RNA-binding protein; 24.9 89 0.0019 31.2 4.1 39 10-48 52-90 (378)
458 COG0452 Dfp Phosphopantothenoy 24.8 1E+02 0.0023 31.0 4.4 46 10-56 4-49 (392)
459 PRK06988 putative formyltransf 24.7 5.1E+02 0.011 25.1 9.1 32 11-47 3-34 (312)
460 PRK13230 nitrogenase reductase 24.6 1.3E+02 0.0029 28.4 5.0 37 12-48 3-39 (279)
461 PRK13011 formyltetrahydrofolat 24.5 6.1E+02 0.013 24.3 9.4 114 322-465 156-271 (286)
462 PRK06546 pyruvate dehydrogenas 24.5 7.1E+02 0.015 26.6 11.0 58 382-450 459-518 (578)
463 PRK02122 glucosamine-6-phospha 24.5 1.1E+02 0.0025 33.0 4.9 39 8-46 367-405 (652)
464 PF00142 Fer4_NifH: 4Fe-4S iro 24.5 1.3E+02 0.0028 28.4 4.6 41 11-51 1-41 (273)
465 PRK07574 formate dehydrogenase 24.4 4.3E+02 0.0092 26.6 8.7 107 302-446 193-299 (385)
466 TIGR01918 various_sel_PB selen 24.2 1.8E+02 0.0039 29.4 5.8 46 107-158 326-378 (431)
467 TIGR01917 gly_red_sel_B glycin 24.2 1.9E+02 0.0041 29.2 5.9 46 107-158 326-378 (431)
468 PRK08939 primosomal protein Dn 24.1 1.3E+02 0.0029 29.1 4.9 44 10-53 156-199 (306)
469 cd00755 YgdL_like Family of ac 24.1 2E+02 0.0044 26.5 5.9 36 8-48 9-45 (231)
470 PF01012 ETF: Electron transfe 23.9 1.1E+02 0.0025 26.2 4.1 29 123-151 90-121 (164)
471 PF07991 IlvN: Acetohydroxy ac 23.9 1.1E+02 0.0023 26.6 3.7 35 10-49 4-38 (165)
472 PRK13010 purU formyltetrahydro 23.9 5.5E+02 0.012 24.6 9.0 113 322-464 160-274 (289)
473 cd03818 GT1_ExpC_like This fam 23.9 3.3E+02 0.0072 27.1 8.1 26 316-341 9-34 (396)
474 PF03308 ArgK: ArgK protein; 23.9 1.7E+02 0.0036 27.6 5.2 44 8-51 27-70 (266)
475 TIGR00745 apbA_panE 2-dehydrop 23.8 84 0.0018 29.9 3.5 28 28-55 4-31 (293)
476 cd03466 Nitrogenase_NifN_2 Nit 23.8 1.1E+02 0.0024 31.2 4.6 25 123-150 372-396 (429)
477 PLN02859 glutamine-tRNA ligase 23.8 1.4E+02 0.003 32.9 5.3 69 411-489 104-178 (788)
478 PRK01185 ppnK inorganic polyph 23.8 1.5E+02 0.0033 28.1 5.1 54 376-452 52-106 (271)
479 cd01840 SGNH_hydrolase_yrhL_li 23.7 1.6E+02 0.0035 24.7 5.0 44 295-339 44-87 (150)
480 PRK05784 phosphoribosylamine-- 23.6 3E+02 0.0066 28.7 7.7 33 11-48 1-35 (486)
481 cd07062 Peptidase_S66_mccF_lik 23.6 1.6E+02 0.0034 28.6 5.3 74 314-406 49-124 (308)
482 PF07015 VirC1: VirC1 protein; 23.6 1.8E+02 0.0039 26.9 5.3 35 17-51 9-43 (231)
483 PRK12829 short chain dehydroge 23.4 1.5E+02 0.0032 27.5 5.1 36 8-47 9-44 (264)
484 PRK00771 signal recognition pa 23.3 1.7E+02 0.0036 30.0 5.6 42 10-51 95-136 (437)
485 PRK10355 xylF D-xylose transpo 23.3 6.9E+02 0.015 24.2 10.5 28 123-150 81-112 (330)
486 PRK08979 acetolactate synthase 23.1 6.9E+02 0.015 26.6 10.6 117 304-450 412-533 (572)
487 PF05728 UPF0227: Uncharacteri 23.1 1.5E+02 0.0033 26.3 4.7 31 125-155 61-92 (187)
488 PF02635 DrsE: DsrE/DsrF-like 23.0 2.8E+02 0.0061 21.8 6.1 41 12-52 2-48 (122)
489 PF02776 TPP_enzyme_N: Thiamin 23.0 3.1E+02 0.0068 23.6 6.7 26 381-406 67-98 (172)
490 KOG1111 N-acetylglucosaminyltr 22.9 7.6E+02 0.017 24.6 9.6 83 315-403 208-300 (426)
491 PLN02285 methionyl-tRNA formyl 22.9 6.5E+02 0.014 24.7 9.5 36 8-48 4-45 (334)
492 PRK05299 rpsB 30S ribosomal pr 22.9 3.5E+02 0.0075 25.5 7.3 33 123-155 157-191 (258)
493 PF01372 Melittin: Melittin; 22.8 12 0.00026 20.7 -1.4 17 387-403 1-17 (26)
494 PF03808 Glyco_tran_WecB: Glyc 22.8 3.8E+02 0.0083 23.2 7.2 87 229-339 47-134 (172)
495 PRK02231 ppnK inorganic polyph 22.7 85 0.0018 29.8 3.2 58 370-450 36-97 (272)
496 PRK08229 2-dehydropantoate 2-r 22.6 93 0.002 30.5 3.7 33 11-48 3-35 (341)
497 PRK13055 putative lipid kinase 22.6 2.5E+02 0.0054 27.5 6.7 25 382-406 63-93 (334)
498 PF06180 CbiK: Cobalt chelatas 22.5 1.1E+02 0.0024 28.9 3.8 40 303-342 2-44 (262)
499 COG0240 GpsA Glycerol-3-phosph 22.5 1.2E+02 0.0025 29.7 4.1 33 11-48 2-34 (329)
500 cd01715 ETF_alpha The electron 22.4 1.5E+02 0.0034 25.5 4.6 29 123-151 83-114 (168)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.2e-67 Score=531.20 Aligned_cols=447 Identities=35% Similarity=0.645 Sum_probs=347.7
Q ss_pred CccccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCC
Q 010825 1 MESKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPAS 80 (500)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~ 80 (500)
||.+. ++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+... .. ...++++|..+|+++++.
T Consensus 1 ~~~~~---~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~--~~------~~~~~i~~~~ip~glp~~ 69 (451)
T PLN02410 1 MEEKP---ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFS--PS------DDFTDFQFVTIPESLPES 69 (451)
T ss_pred CCcCC---CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccc--cc------cCCCCeEEEeCCCCCCcc
Confidence 66444 46799999999999999999999999999999999999876421 10 112369999999988764
Q ss_pred CCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHH
Q 010825 81 SDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMG 160 (500)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (500)
..... ....++..+.+.+ .+.++++++++..+ .+++++|||+|.+++|+..+|+++|||++.|++++++.++.
T Consensus 70 --~~~~~-~~~~~~~~~~~~~-~~~~~~~L~~l~~~---~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~ 142 (451)
T PLN02410 70 --DFKNL-GPIEFLHKLNKEC-QVSFKDCLGQLVLQ---QGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVC 142 (451)
T ss_pred --ccccc-CHHHHHHHHHHHh-HHHHHHHHHHHHhc---cCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHH
Confidence 11211 2334555555566 77788888776321 12367999999999999999999999999999999988876
Q ss_pred HhhhhhhhhcCC-CCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcCh
Q 010825 161 FKQFRTFKEKGL-FPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTF 239 (500)
Q Consensus 161 ~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~ 239 (500)
..++......+. .|..... ......+|++..+...+++...... .+.....+.... ..++++.+++|||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~iPg~~~~~~~dlp~~~~~~--~~~~~~~~~~~~-~~~~~~~vlvNTf 212 (451)
T PLN02410 143 RSVFDKLYANNVLAPLKEPK-------GQQNELVPEFHPLRCKDFPVSHWAS--LESIMELYRNTV-DKRTASSVIINTA 212 (451)
T ss_pred HHHHHHHHhccCCCCccccc-------cCccccCCCCCCCChHHCcchhcCC--cHHHHHHHHHHh-hcccCCEEEEeCh
Confidence 554433222111 1221110 0011247777766666776543211 112222222222 3467889999999
Q ss_pred HHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHH
Q 010825 240 DALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQ 319 (500)
Q Consensus 240 ~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~ 319 (500)
++||+.++++++...+++++.|||++..... +...++...++.+|||++++++||||||||...++.++
T Consensus 213 ~eLE~~~~~~l~~~~~~~v~~vGpl~~~~~~-----------~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q 281 (451)
T PLN02410 213 SCLESSSLSRLQQQLQIPVYPIGPLHLVASA-----------PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINE 281 (451)
T ss_pred HHhhHHHHHHHHhccCCCEEEecccccccCC-----------CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHH
Confidence 9999999999987553489999999754310 11112234568999999988899999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCC--CCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhc
Q 010825 320 LIEVAMGLVNSNHPFLWIIRPDLVTGE--TADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCA 397 (500)
Q Consensus 320 ~~~l~~al~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~ 397 (500)
+.+++.+|+..+.+|+|+++.+...+. ...+|++|.+|.++|+++.+|+||.+||+|+++++|||||||||++||+++
T Consensus 282 ~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~ 361 (451)
T PLN02410 282 VMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGE 361 (451)
T ss_pred HHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHc
Confidence 999999999999999999985421111 123799999999999999999999999999999999999999999999999
Q ss_pred CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCC
Q 010825 398 GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGS 477 (500)
Q Consensus 398 GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 477 (500)
|||||++|+++||+.||+++++.+|+|+.+ +..+++++|+++|+++|.+++|+.||+++++|++++++|.++|||
T Consensus 362 GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~-----~~~~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGs 436 (451)
T PLN02410 362 GVPMICKPFSSDQKVNARYLECVWKIGIQV-----EGDLDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGS 436 (451)
T ss_pred CCCEEeccccccCHHHHHHHHHHhCeeEEe-----CCcccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999997677999999 678999999999999998877889999999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 010825 478 SATNLEKLVNQVLL 491 (500)
Q Consensus 478 ~~~~~~~l~~~~~~ 491 (500)
|..++++|+++++.
T Consensus 437 S~~~l~~fv~~~~~ 450 (451)
T PLN02410 437 SHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999863
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=3.9e-67 Score=529.20 Aligned_cols=467 Identities=32% Similarity=0.593 Sum_probs=360.0
Q ss_pred CccccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcC--CC--CCCCCCCeeEEeCCCC
Q 010825 1 MESKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRG--EH--SLGGLPSFRFEAIPDG 76 (500)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~--~~--~~~~~~~~~f~~l~~~ 76 (500)
|+|.+. +.||+++|+|++||++|++.||+.|+.+|..|||++++.+..++.+... +. .......+.|..+|++
T Consensus 1 ~~~~~~---~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdg 77 (480)
T PLN02555 1 MESESS---LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDG 77 (480)
T ss_pred CCCCCC---CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCC
Confidence 777776 5799999999999999999999999999999999999977665543110 00 0011224777778888
Q ss_pred CCCCCCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchh
Q 010825 77 LPASSDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISAC 156 (500)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 156 (500)
++.+.+ ...++..++..+...+ .+.++++++++..+ +++++|||+|.+++|+..+|+++|||.+.|++++++
T Consensus 78 lp~~~~---~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~----~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~ 149 (480)
T PLN02555 78 WAEDDP---RRQDLDLYLPQLELVG-KREIPNLVKRYAEQ----GRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCA 149 (480)
T ss_pred CCCCcc---cccCHHHHHHHHHHhh-hHHHHHHHHHHhcc----CCCceEEEECCcchHHHHHHHHcCCCeEEeecccHH
Confidence 876521 1234445556555566 78888888876422 234599999999999999999999999999999998
Q ss_pred HHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEE
Q 010825 157 SFMGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIII 236 (500)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 236 (500)
.++.+.+... +..|..... ...... .+|+++.++..+++.++......+.+.+.+.+..+...+++.+++
T Consensus 150 ~~~~~~~~~~----~~~~~~~~~-----~~~~~~-~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlv 219 (480)
T PLN02555 150 CFSAYYHYYH----GLVPFPTET-----EPEIDV-QLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILI 219 (480)
T ss_pred HHHHHHHHhh----cCCCccccc-----CCCcee-ecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEE
Confidence 8887665421 211211100 000122 378887788888887654222222333444444556678899999
Q ss_pred cChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccC
Q 010825 237 HTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMN 316 (500)
Q Consensus 237 ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~ 316 (500)
|||++||+.+++.++...| ++.|||+........ . ..+...++.++++.+||+.+++++||||||||+..++
T Consensus 220 NTf~eLE~~~~~~l~~~~~--v~~iGPl~~~~~~~~-~-----~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~ 291 (480)
T PLN02555 220 DTFQELEKEIIDYMSKLCP--IKPVGPLFKMAKTPN-S-----DVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLK 291 (480)
T ss_pred EchHHHhHHHHHHHhhCCC--EEEeCcccCcccccc-c-----cccccccccchhHHHHHhCCCCCceeEEEeccccCCC
Confidence 9999999999998876544 999999975321100 0 1111223445679999999988899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCCCC--CCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHH
Q 010825 317 KQQLIEVAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIES 394 (500)
Q Consensus 317 ~~~~~~l~~al~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~ea 394 (500)
.+++.+++.+++..+++|||+++..... .....+|++|.++.++|+++.+|+||.+||.|+++++|||||||||++||
T Consensus 292 ~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea 371 (480)
T PLN02555 292 QEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEA 371 (480)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHH
Confidence 9999999999999999999999743211 11123788999888999999999999999999999999999999999999
Q ss_pred HhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC-CCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhC
Q 010825 395 LCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD-DNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATA 473 (500)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~ 473 (500)
+++|||||++|+++||+.||+++++.+|+|+++..+++ +..++.++|.++|+++|.+++|+++|+||++|++++++|.+
T Consensus 372 i~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~ 451 (480)
T PLN02555 372 LSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVA 451 (480)
T ss_pred HHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999777899999932111 24689999999999999888889999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHhcCCCC
Q 010825 474 PDGSSATNLEKLVNQVLLSEGLI 496 (500)
Q Consensus 474 ~~g~~~~~~~~l~~~~~~~~~~~ 496 (500)
+||||.+++++|++++.+++..+
T Consensus 452 egGSS~~~l~~~v~~i~~~~~~~ 474 (480)
T PLN02555 452 EGGSSDRNFQEFVDKLVRKSVEI 474 (480)
T ss_pred CCCcHHHHHHHHHHHHHhcccee
Confidence 99999999999999999886654
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=4.9e-66 Score=517.05 Aligned_cols=441 Identities=30% Similarity=0.529 Sum_probs=340.1
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (500)
++.||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... ..++++|..+|++++.. ......
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~--~~~~~~ 74 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQG--GFSSAG 74 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCc--cccccc
Confidence 346999999999999999999999999999999999998765544221 11359999999988874 122233
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhh
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFK 168 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (500)
++..++..+.+.+ .+.++++++.+..+ +++.||||+|.+.+|+..+|+++|||++.|++++++.+..++. ....
T Consensus 75 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~ 148 (449)
T PLN02173 75 SVPEYLQNFKTFG-SKTVADIIRKHQST----DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN 148 (449)
T ss_pred CHHHHHHHHHHhh-hHHHHHHHHHhhcc----CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc
Confidence 4556677666677 88999999876421 1234999999999999999999999999999988877654332 1110
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHHH
Q 010825 169 EKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVLN 248 (500)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 248 (500)
... ... -+|+++.++.++++.++............+.+......+++.+++|||++||+.+++
T Consensus 149 -~~~---------------~~~-~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 211 (449)
T PLN02173 149 -NGS---------------LTL-PIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENE 211 (449)
T ss_pred -cCC---------------ccC-CCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHH
Confidence 000 011 156776677778877654322222333434344456678999999999999999999
Q ss_pred HHhhhCCCcceecCCchhhhhhhhhhcccccccCCCcc--chhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHH
Q 010825 249 ALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLL--KEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMG 326 (500)
Q Consensus 249 ~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~a 326 (500)
+++.. + +++.|||++......... +.........| ..++++.+||+.+++++||||||||+..++.+++.+++.+
T Consensus 212 ~~~~~-~-~v~~VGPl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~g 288 (449)
T PLN02173 212 LLSKV-C-PVLTIGPTVPSMYLDQQI-KSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASA 288 (449)
T ss_pred HHHhc-C-CeeEEcccCchhhccccc-cccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHH
Confidence 98764 4 699999997421000000 00000000112 2245699999999888999999999999999999999999
Q ss_pred HHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-hcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCC
Q 010825 327 LVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWP 405 (500)
Q Consensus 327 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 405 (500)
| .+.+|+|+++.... ..+|++|.++. ++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 289 L--s~~~flWvvr~~~~----~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 362 (449)
T PLN02173 289 I--SNFSYLWVVRASEE----SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMP 362 (449)
T ss_pred h--cCCCEEEEEeccch----hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecC
Confidence 9 67789999975321 12788898887 57899999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 010825 406 FLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKL 485 (500)
Q Consensus 406 ~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 485 (500)
+++||+.||+++++.+|+|+.+...+.+..++.++|.++|+++|.|++|+.+|++++++++++++|.++||||.+++++|
T Consensus 363 ~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~ 442 (449)
T PLN02173 363 QWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTF 442 (449)
T ss_pred chhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999999977779999993211123579999999999999988788999999999999999999999999999999
Q ss_pred HHHHH
Q 010825 486 VNQVL 490 (500)
Q Consensus 486 ~~~~~ 490 (500)
++++.
T Consensus 443 v~~~~ 447 (449)
T PLN02173 443 VSKIQ 447 (449)
T ss_pred HHHhc
Confidence 99874
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.5e-66 Score=520.87 Aligned_cols=438 Identities=26% Similarity=0.510 Sum_probs=340.9
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTT 87 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (500)
+++.||+++|+|++||++|++.||+.|+.+|++|||++++.+..++.+... ..++++|..+|++++.. . .
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~-----~~~~i~~v~lp~g~~~~--~---~ 73 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLD-----PKLGITFMSISDGQDDD--P---P 73 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccC-----CCCCEEEEECCCCCCCC--c---c
Confidence 445799999999999999999999999999999999999988766654311 12369999999877543 1 1
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhh
Q 010825 88 QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTF 167 (500)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (500)
.++..++..+...+ .+.+.++++++... ++++|||+|.+.+|+..+|+++|||++.|++++++.++.+.+.+..
T Consensus 74 ~~~~~l~~a~~~~~-~~~l~~ll~~l~~~-----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~ 147 (448)
T PLN02562 74 RDFFSIENSMENTM-PPQLERLLHKLDED-----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPEL 147 (448)
T ss_pred ccHHHHHHHHHHhc-hHHHHHHHHHhcCC-----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHH
Confidence 23444444544466 78888998887432 2469999999999999999999999999999988877765554433
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHH
Q 010825 168 KEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (500)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~ 247 (500)
...++.+..... .......++|+++.+..++++.+...........+.+.+..+...+++.+++|||++||+.++
T Consensus 148 ~~~~~~~~~~~~-----~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~ 222 (448)
T PLN02562 148 VRTGLISETGCP-----RQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDV 222 (448)
T ss_pred hhcccccccccc-----ccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHH
Confidence 222221111000 001123357888777778888755332212233444555556667889999999999999988
Q ss_pred HHHh-----hhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeecccc-ccCHHHHH
Q 010825 248 NALS-----FIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSII-IMNKQQLI 321 (500)
Q Consensus 248 ~~~~-----~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~-~~~~~~~~ 321 (500)
+..+ +..| +++.|||++...... ......+..+.++.+||+++++++||||||||+. .++.++++
T Consensus 223 ~~~~~~~~~~~~~-~v~~iGpl~~~~~~~--------~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~ 293 (448)
T PLN02562 223 KNHQASYNNGQNP-QILQIGPLHNQEATT--------ITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVR 293 (448)
T ss_pred HHHHhhhccccCC-CEEEecCcccccccc--------cCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHH
Confidence 8664 3456 899999997543100 0011112345668899999988899999999986 67899999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCce
Q 010825 322 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPM 401 (500)
Q Consensus 322 ~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 401 (500)
+++.+++..+.+|||+++.+... .+|++|.++.++|+++.+|+||.+||+|+++++|||||||||++||+++||||
T Consensus 294 ~l~~~l~~~g~~fiW~~~~~~~~----~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~ 369 (448)
T PLN02562 294 TLALALEASGRPFIWVLNPVWRE----GLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRL 369 (448)
T ss_pred HHHHHHHHCCCCEEEEEcCCchh----hCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCE
Confidence 99999999999999999753211 27889999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 010825 402 ICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATN 481 (500)
Q Consensus 402 v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 481 (500)
|++|+++||+.||+++++++|+|+.+ . .++.++|.++|+++|.|++ ||+||++++++++++ ++||||.++
T Consensus 370 l~~P~~~DQ~~na~~~~~~~g~g~~~-----~-~~~~~~l~~~v~~~l~~~~---~r~~a~~l~~~~~~~-~~gGSS~~n 439 (448)
T PLN02562 370 LCYPVAGDQFVNCAYIVDVWKIGVRI-----S-GFGQKEVEEGLRKVMEDSG---MGERLMKLRERAMGE-EARLRSMMN 439 (448)
T ss_pred EeCCcccchHHHHHHHHHHhCceeEe-----C-CCCHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 99999999999999996567999988 4 4799999999999999877 999999999999886 667999999
Q ss_pred HHHHHHHH
Q 010825 482 LEKLVNQV 489 (500)
Q Consensus 482 ~~~l~~~~ 489 (500)
+++|++++
T Consensus 440 l~~~v~~~ 447 (448)
T PLN02562 440 FTTLKDEL 447 (448)
T ss_pred HHHHHHHh
Confidence 99999986
No 5
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=6.2e-65 Score=513.63 Aligned_cols=444 Identities=28% Similarity=0.498 Sum_probs=339.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHH--HHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKL--LHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS 85 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (500)
.++.||+++|+|++||++|++.||++ |++||++|||++++.+.+++.... .....+++..+|+++++. . .
T Consensus 6 ~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~-----~~~~~~~~~~~~~glp~~--~-~ 77 (456)
T PLN02210 6 GQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVE-----KPRRPVDLVFFSDGLPKD--D-P 77 (456)
T ss_pred CCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhcccc-----CCCCceEEEECCCCCCCC--c-c
Confidence 45689999999999999999999999 569999999999998876653321 123458888888888776 2 1
Q ss_pred ccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhh
Q 010825 86 TTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFR 165 (500)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (500)
.+...++..+.+.+ .+.++++++.. +||+||+|.+.+|+..+|+++|||.+.|+++++..++...+..
T Consensus 78 --~~~~~~~~~~~~~~-~~~l~~~l~~~---------~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 78 --RAPETLLKSLNKVG-AKNLSKIIEEK---------RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred --cCHHHHHHHHHHhh-hHHHHHHHhcC---------CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 23334555555566 66667776653 7999999999999999999999999999999998877655432
Q ss_pred hhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHH
Q 010825 166 TFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQ 245 (500)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 245 (500)
... ...+.. . ..... ..+|+++.+...+++..+.... ...+........+....++.+++|||++||+.
T Consensus 146 ~~~--~~~~~~--~-----~~~~~-~~~Pgl~~~~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 214 (456)
T PLN02210 146 MKT--NSFPDL--E-----DLNQT-VELPALPLLEVRDLPSFMLPSG-GAHFNNLMAEFADCLRYVKWVLVNSFYELESE 214 (456)
T ss_pred hcc--CCCCcc--c-----ccCCe-eeCCCCCCCChhhCChhhhcCC-chHHHHHHHHHHHhcccCCEEEEeCHHHHhHH
Confidence 211 111110 0 00011 2367777677777776543321 11222333344455677899999999999999
Q ss_pred HHHHHhhhCCCcceecCCchhhh--hhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHH
Q 010825 246 VLNALSFIFPLQLFTIGPLQLLL--NQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEV 323 (500)
Q Consensus 246 ~~~~~~~~~p~~~~~vGpl~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l 323 (500)
+++.++.. + ++++|||++... ...+.. .........|+.+++|.+||+.+++++||||||||....+.++++++
T Consensus 215 ~~~~l~~~-~-~v~~VGPl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~ 290 (456)
T PLN02210 215 IIESMADL-K-PVIPIGPLVSPFLLGDDEEE--TLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETI 290 (456)
T ss_pred HHHHHhhc-C-CEEEEcccCchhhcCccccc--ccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHH
Confidence 99998774 5 799999997421 000000 00000001244567799999998888999999999998999999999
Q ss_pred HHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-hcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCcee
Q 010825 324 AMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMI 402 (500)
Q Consensus 324 ~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 402 (500)
+.+|+..+.+|||+++.+.... .++.|.++. ++++++++|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 291 a~~l~~~~~~flw~~~~~~~~~----~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v 366 (456)
T PLN02210 291 AKALKNRGVPFLWVIRPKEKAQ----NVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVV 366 (456)
T ss_pred HHHHHhCCCCEEEEEeCCcccc----chhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEE
Confidence 9999999999999997532111 345566665 47888999999999999999999999999999999999999999
Q ss_pred eCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010825 403 CWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNL 482 (500)
Q Consensus 403 ~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 482 (500)
++|+++||+.||+++++.+|+|+++...+.++.++.++|+++|+++|.+++|++||+||++|++.+++|.++||||..++
T Consensus 367 ~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l 446 (456)
T PLN02210 367 AYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNL 446 (456)
T ss_pred ecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999999999965599999993211124699999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHH
Q 010825 483 EKLVNQVL 490 (500)
Q Consensus 483 ~~l~~~~~ 490 (500)
++|++++.
T Consensus 447 ~~~v~~~~ 454 (456)
T PLN02210 447 DLFISDIT 454 (456)
T ss_pred HHHHHHHh
Confidence 99999875
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=6.4e-65 Score=510.81 Aligned_cols=456 Identities=24% Similarity=0.393 Sum_probs=335.7
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCC--CEEEEEeCCcch-hhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKG--FHITFVNTEFNH-RRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS 85 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~-~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (500)
++.||+++|+|++||++|++.||+.|+.+| ..|||++++.+. ..+..... ......++++|..+|+..... ...
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~--~~~ 78 (468)
T PLN02207 2 RNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVK-SIASSQPFVRFIDVPELEEKP--TLG 78 (468)
T ss_pred CCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhh-hccCCCCCeEEEEeCCCCCCC--ccc
Confidence 467999999999999999999999999998 999999988764 22222111 001112369999999644211 101
Q ss_pred ccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhh
Q 010825 86 TTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFR 165 (500)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (500)
...+....+......+ .+.+++.+.++....+..+++++|||+|.+++|+..+|+++|||.+.|+++++..++.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 79 GTQSVEAYVYDVIEKN-IPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred cccCHHHHHHHHHHhc-chhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1233433333333344 444433333332110001234599999999999999999999999999999998777655543
Q ss_pred hhhhcCC-CCCCCccchhhhhcccccccCCCC-CCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhh
Q 010825 166 TFKEKGL-FPVDDKSCLTKEYLSRLIDWIPGM-KDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALE 243 (500)
Q Consensus 166 ~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le 243 (500)
....... .+... .+ ....+|++ ..+...+++.+...... ...+.+......+++++++|||++||
T Consensus 158 ~~~~~~~~~~~~~--------~~-~~~~vPgl~~~l~~~dlp~~~~~~~~----~~~~~~~~~~~~~~~~vlvNtf~~LE 224 (468)
T PLN02207 158 DRHSKDTSVFVRN--------SE-EMLSIPGFVNPVPANVLPSALFVEDG----YDAYVKLAILFTKANGILVNSSFDIE 224 (468)
T ss_pred hccccccccCcCC--------CC-CeEECCCCCCCCChHHCcchhcCCcc----HHHHHHHHHhcccCCEEEEEchHHHh
Confidence 2211100 00000 01 11247887 56888888876532221 22223333456789999999999999
Q ss_pred HHHHHHHhh--hCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHH
Q 010825 244 QQVLNALSF--IFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLI 321 (500)
Q Consensus 244 ~~~~~~~~~--~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~ 321 (500)
+++++.++. ..| +++.|||++..... +.+......++++.+|||++++++||||||||...++.++++
T Consensus 225 ~~~~~~~~~~~~~p-~v~~VGPl~~~~~~---------~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ 294 (468)
T PLN02207 225 PYSVNHFLDEQNYP-SVYAVGPIFDLKAQ---------PHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVK 294 (468)
T ss_pred HHHHHHHHhccCCC-cEEEecCCcccccC---------CCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHH
Confidence 999998854 557 89999999854321 121100113467999999998889999999999999999999
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCce
Q 010825 322 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPM 401 (500)
Q Consensus 322 ~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 401 (500)
+++.+|+..+++|||+++.... .....+|++|.++.++|+.+++|+||.+||+|+++++|||||||||++||+++||||
T Consensus 295 ela~~l~~~~~~flW~~r~~~~-~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~ 373 (468)
T PLN02207 295 EIAHGLELCQYRFLWSLRTEEV-TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPI 373 (468)
T ss_pred HHHHHHHHCCCcEEEEEeCCCc-cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCE
Confidence 9999999999999999985332 112348899999999999999999999999999999999999999999999999999
Q ss_pred eeCCcccchhhhHHHhhhhhcceeEeeeC-C--CCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCCh
Q 010825 402 ICWPFLGDQPTNCRYTCNEWGVGLEIING-G--DDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSS 478 (500)
Q Consensus 402 v~~P~~~DQ~~na~~~~~~~G~g~~~~~~-~--~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 478 (500)
|++|+++||+.||+++++++|+|+++..+ . .+..++.++|.++|+++|++ +++.||+|+++|++++++|.++||||
T Consensus 374 l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS 452 (468)
T PLN02207 374 VTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSS 452 (468)
T ss_pred EecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999986779999988211 1 11346999999999999973 25579999999999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 010825 479 ATNLEKLVNQVLLSE 493 (500)
Q Consensus 479 ~~~~~~l~~~~~~~~ 493 (500)
..++++|+++++..+
T Consensus 453 ~~~l~~~v~~~~~~~ 467 (468)
T PLN02207 453 FAAIEKFIHDVIGIK 467 (468)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.8e-64 Score=506.50 Aligned_cols=438 Identities=30% Similarity=0.527 Sum_probs=337.4
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHh-CCCEEEEEeCCcc-hhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHH-KGFHITFVNTEFN-HRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTT 87 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (500)
+.||+++|+|++||++|++.||+.|+. +|+.|||++++.+ ...+.+. ....++++|..++++++.+ .....
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-----~~~~~~i~~~~i~dglp~g--~~~~~ 75 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-----HNNVENLSFLTFSDGFDDG--VISNT 75 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-----CCCCCCEEEEEcCCCCCCc--ccccc
Confidence 469999999999999999999999996 7999999999854 2222111 0112369999999888776 21223
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhh
Q 010825 88 QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTF 167 (500)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (500)
.++...+......+ .+.+.++++++... +++++|||+|.+.+|+..+|+++|||++.|++++++.++.+++....
T Consensus 76 ~~~~~~~~~~~~~~-~~~l~~~l~~l~~~----~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~ 150 (455)
T PLN02152 76 DDVQNRLVNFERNG-DKALSDFIEANLNG----DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTG 150 (455)
T ss_pred ccHHHHHHHHHHhc-cHHHHHHHHHhhcc----CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhcc
Confidence 45555666667777 88999999886421 23569999999999999999999999999999999888765544311
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccc--cCcEEEEcChHHhhHH
Q 010825 168 KEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENAS--KASAIIIHTFDALEQQ 245 (500)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ns~~~le~~ 245 (500)
. + ....+|+++.+...+++.++........+.+.+....+... .++.+++|||++||+.
T Consensus 151 ~-----~--------------~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 211 (455)
T PLN02152 151 N-----N--------------SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPE 211 (455)
T ss_pred C-----C--------------CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHH
Confidence 0 0 01137777767778888766432222233334334444332 2469999999999999
Q ss_pred HHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCC--CccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHH
Q 010825 246 VLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGY--NLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEV 323 (500)
Q Consensus 246 ~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l 323 (500)
++++++. . +++.|||+......... ..+. ..++.+.++.+|||.+++++||||||||+..++.++++++
T Consensus 212 ~~~~l~~--~-~v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~el 282 (455)
T PLN02152 212 FLTAIPN--I-EMVAVGPLLPAEIFTGS------ESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEEL 282 (455)
T ss_pred HHHhhhc--C-CEEEEcccCcccccccc------ccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHH
Confidence 9998865 3 69999999743210000 0000 1122345799999999888999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEcCCCCC-----CC---CCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHH
Q 010825 324 AMGLVNSNHPFLWIIRPDLVT-----GE---TADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESL 395 (500)
Q Consensus 324 ~~al~~~~~~~v~~~~~~~~~-----~~---~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal 395 (500)
+.+|+..+.+|||+++.+... +. ...+|++|.++.++|+++.+|+||.+||+|+++++|||||||||++||+
T Consensus 283 a~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~ 362 (455)
T PLN02152 283 ARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESL 362 (455)
T ss_pred HHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHH
Confidence 999999999999999853110 00 0114789999999999999999999999999999999999999999999
Q ss_pred hcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCC
Q 010825 396 CAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPD 475 (500)
Q Consensus 396 ~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~ 475 (500)
++|||||++|+++||+.||+++++.+|+|+.+ ..+++..++.++|+++|+++|+|+ +++||+++++|+++++++..+|
T Consensus 363 ~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~-~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~g 440 (455)
T PLN02152 363 VLGVPVVAFPMWSDQPANAKLLEEIWKTGVRV-RENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEG 440 (455)
T ss_pred HcCCCEEeccccccchHHHHHHHHHhCceEEe-ecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999997667888887 221123579999999999999754 5679999999999999999999
Q ss_pred CChHHHHHHHHHHH
Q 010825 476 GSSATNLEKLVNQV 489 (500)
Q Consensus 476 g~~~~~~~~l~~~~ 489 (500)
|||.+++++|++++
T Consensus 441 gsS~~nl~~li~~i 454 (455)
T PLN02152 441 GSSDKNVEAFVKTL 454 (455)
T ss_pred CcHHHHHHHHHHHh
Confidence 99999999999986
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-64 Score=509.84 Aligned_cols=463 Identities=25% Similarity=0.401 Sum_probs=339.1
Q ss_pred CccccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC----CC
Q 010825 1 MESKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP----DG 76 (500)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~----~~ 76 (500)
|.|... ..+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++..... ..+++++..+| ++
T Consensus 1 ~~~~~~-~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~-----~~~~i~~~~lp~P~~~~ 74 (477)
T PLN02863 1 MTELNK-PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLS-----KHPSIETLVLPFPSHPS 74 (477)
T ss_pred Cccccc-CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcc-----cCCCeeEEeCCCCCcCC
Confidence 444444 556899999999999999999999999999999999999988877654321 12356766553 14
Q ss_pred CCCCCCCCCc-cccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccch
Q 010825 77 LPASSDESST-TQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISA 155 (500)
Q Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~ 155 (500)
++.+.+.... ..+....+......+ .+.+.+++++. +.+++|||+|.+.+|+..+|+++|||++.|+++++
T Consensus 75 lPdG~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~l~~~-------~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA 146 (477)
T PLN02863 75 IPSGVENVKDLPPSGFPLMIHALGEL-YAPLLSWFRSH-------PSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGA 146 (477)
T ss_pred CCCCCcChhhcchhhHHHHHHHHHHh-HHHHHHHHHhC-------CCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCH
Confidence 4444111110 111112222233344 55666666653 13789999999999999999999999999999999
Q ss_pred hHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEE
Q 010825 156 CSFMGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAII 235 (500)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (500)
+.++.+++.... .|..... .+......+..+|++..+...+++.++......+...+.+.+.......++.++
T Consensus 147 ~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl 219 (477)
T PLN02863 147 MALSIMYSLWRE-----MPTKINP--DDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLV 219 (477)
T ss_pred HHHHHHHHHhhc-----ccccccc--cccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEE
Confidence 988876664321 1111000 000000112347888778888888655432222223334444444456778899
Q ss_pred EcChHHhhHHHHHHHhhhC--CCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeecccc
Q 010825 236 IHTFDALEQQVLNALSFIF--PLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSII 313 (500)
Q Consensus 236 ~ns~~~le~~~~~~~~~~~--p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~ 313 (500)
+|||++||+.++++++... + +++.|||++......... . ..+.+....++++.+||+.+++++||||||||+.
T Consensus 220 vNTf~eLE~~~~~~~~~~~~~~-~v~~IGPL~~~~~~~~~~--~--~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~ 294 (477)
T PLN02863 220 VNSFTELEGIYLEHLKKELGHD-RVWAVGPILPLSGEKSGL--M--ERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQV 294 (477)
T ss_pred EecHHHHHHHHHHHHHhhcCCC-CeEEeCCCcccccccccc--c--ccCCcccccHHHHHHHHhcCCCCceEEEEeecee
Confidence 9999999999999998754 4 799999997432100000 0 0001111124679999999988899999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhhc-CceeeeccchhHhhccCCcceeEeecCchhH
Q 010825 314 IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKE-KGFIASWCPQEEVLNHPAIGGFFTHSGWNST 391 (500)
Q Consensus 314 ~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~ 391 (500)
..+.+++++++.+|+..+.+|||+++..... .....+|++|.++..+ ++++.+|+||.+||+|+++++|||||||||+
T Consensus 295 ~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~ 374 (477)
T PLN02863 295 VLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSV 374 (477)
T ss_pred cCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHH
Confidence 9999999999999999999999999854321 1122378889877654 4566799999999999999999999999999
Q ss_pred HHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 010825 392 IESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEA 471 (500)
Q Consensus 392 ~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~ 471 (500)
+||+++|||||++|+++||+.||+++++++|+|+++ ++++....+.+++.++|.++|.+ +++||+||+++++++++|
T Consensus 375 ~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~-~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~A 451 (477)
T PLN02863 375 LEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRV-CEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDA 451 (477)
T ss_pred HHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEe-ccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999986789999999 22222356899999999999942 235999999999999999
Q ss_pred hCCCCChHHHHHHHHHHHHhc
Q 010825 472 TAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 472 ~~~~g~~~~~~~~l~~~~~~~ 492 (500)
.++||||.+++++|++++.+.
T Consensus 452 v~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 452 IKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred hccCCcHHHHHHHHHHHHHHh
Confidence 999999999999999999764
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=3e-64 Score=506.77 Aligned_cols=434 Identities=26% Similarity=0.447 Sum_probs=332.8
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHH-hCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC----CCCCCCCCC
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD----GLPASSDES 84 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~----~~~~~~~~~ 84 (500)
|.||+++|+|++||++|++.||+.|+ ++|++|||++++.+..++.+... ..+++++..+|. ++++. ..
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~-----~~~~i~~~~lp~p~~~glp~~--~~ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFL-----NSTGVDIVGLPSPDISGLVDP--SA 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccc-----cCCCceEEECCCccccCCCCC--Cc
Confidence 45999999999999999999999998 78999999999987655533211 112588888874 34322 11
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhh
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQF 164 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (500)
+....+......+ .+.++++++++. .+|++||+|.+++|+..+|+++|||++.|++++++.++...+.
T Consensus 78 ----~~~~~~~~~~~~~-~~~~~~~l~~~~-------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~ 145 (481)
T PLN02992 78 ----HVVTKIGVIMREA-VPTLRSKIAEMH-------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYY 145 (481)
T ss_pred ----cHHHHHHHHHHHh-HHHHHHHHHhcC-------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhh
Confidence 1222222333445 677888887752 2789999999999999999999999999999999877654444
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhH
Q 010825 165 RTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQ 244 (500)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~ 244 (500)
+......-.+.. ..... ..+|+++.++..+++..+... .......+.+......+++.+++|||++||+
T Consensus 146 ~~~~~~~~~~~~--------~~~~~-~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~ 214 (481)
T PLN02992 146 PTLDKDIKEEHT--------VQRKP-LAMPGCEPVRFEDTLDAYLVP--DEPVYRDFVRHGLAYPKADGILVNTWEEMEP 214 (481)
T ss_pred hhhccccccccc--------cCCCC-cccCCCCccCHHHhhHhhcCC--CcHHHHHHHHHHHhcccCCEEEEechHHHhH
Confidence 321111000000 00012 247888777777777533221 1123344444555667899999999999999
Q ss_pred HHHHHHhhh-------CCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCH
Q 010825 245 QVLNALSFI-------FPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNK 317 (500)
Q Consensus 245 ~~~~~~~~~-------~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~ 317 (500)
.++++++.. .+ +++.|||+..... . . +.++++.+|||.+++++||||||||...++.
T Consensus 215 ~~l~~l~~~~~~~~~~~~-~v~~VGPl~~~~~----------~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~ 278 (481)
T PLN02992 215 KSLKSLQDPKLLGRVARV-PVYPIGPLCRPIQ----------S---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSA 278 (481)
T ss_pred HHHHHHhhccccccccCC-ceEEecCccCCcC----------C---C--cchHHHHHHHHcCCCCceEEEeecccccCCH
Confidence 999998652 24 7999999974211 0 0 1345699999999888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCC---------------C-CCCCCchHHHHHhhcCce-eeeccchhHhhccCCcc
Q 010825 318 QQLIEVAMGLVNSNHPFLWIIRPDLVT---------------G-ETADLPAEFEVKAKEKGF-IASWCPQEEVLNHPAIG 380 (500)
Q Consensus 318 ~~~~~l~~al~~~~~~~v~~~~~~~~~---------------~-~~~~~~~~~~~~~~~nv~-~~~~~pq~~lL~~~~~~ 380 (500)
+++++++.+|+..+++|||+++..... . ....+|++|.+|+.++.. +.+|+||.+||+|++++
T Consensus 279 ~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg 358 (481)
T PLN02992 279 KQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVG 358 (481)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccC
Confidence 999999999999999999999742100 0 012478999999877654 56999999999999999
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHH
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNK 460 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~ 460 (500)
+|||||||||++||+++|||||++|+++||+.||+++++++|+|+.+ .. .+..++.++|.++|.++|.+++|+.||++
T Consensus 359 ~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~-~~-~~~~~~~~~l~~av~~vm~~~~g~~~r~~ 436 (481)
T PLN02992 359 GFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRS-DD-PKEVISRSKIEALVRKVMVEEEGEEMRRK 436 (481)
T ss_pred eeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEe-cC-CCCcccHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999999999999999999999999996689999999 11 01358999999999999998778889999
Q ss_pred HHHHHHHHHHHhC--CCCChHHHHHHHHHHHHh
Q 010825 461 ASKWKRFAEEATA--PDGSSATNLEKLVNQVLL 491 (500)
Q Consensus 461 a~~l~~~~~~~~~--~~g~~~~~~~~l~~~~~~ 491 (500)
++++++++++|.+ +||||.+++++|++++.+
T Consensus 437 a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 437 VKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 9999999999994 699999999999999865
No 10
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.2e-63 Score=505.88 Aligned_cols=446 Identities=32% Similarity=0.587 Sum_probs=342.6
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS 85 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (500)
..+.||+++|+|++||++|++.||++|++| ||+|||++++.+...+..... .++++|..+|++++.. ..
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~------~~gi~fv~lp~~~p~~---~~ 78 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPK------PDNIRFATIPNVIPSE---LV 78 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCC------CCCEEEEECCCCCCCc---cc
Confidence 346899999999999999999999999999 999999999998877766421 2379999999876654 22
Q ss_pred ccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhh
Q 010825 86 TTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFR 165 (500)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 165 (500)
...++..++..+.+.+ .+.++++++++. . ++|+||+|.+++|+..+|+++|||++.++++++..++.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~------~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~ 150 (459)
T PLN02448 79 RAADFPGFLEAVMTKM-EAPFEQLLDRLE-P------PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFD 150 (459)
T ss_pred cccCHHHHHHHHHHHh-HHHHHHHHHhcC-C------CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhh
Confidence 2234555566555566 778888888763 2 7899999999999999999999999999999987777655544
Q ss_pred hhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHH
Q 010825 166 TFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQ 245 (500)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~ 245 (500)
.....+..|..... .......++|++..+...+++.+.... .....+.+........+++.+++|||++||+.
T Consensus 151 ~~~~~~~~~~~~~~-----~~~~~~~~iPg~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~ 223 (459)
T PLN02448 151 LLPQNGHFPVELSE-----SGEERVDYIPGLSSTRLSDLPPIFHGN--SRRVLKRILEAFSWVPKAQYLLFTSFYELEAQ 223 (459)
T ss_pred hhhhccCCCCcccc-----ccCCccccCCCCCCCChHHCchhhcCC--chHHHHHHHHHHhhcccCCEEEEccHHHhhHH
Confidence 32211111211100 001123357777767777777654322 22223334444455667889999999999999
Q ss_pred HHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHH
Q 010825 246 VLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAM 325 (500)
Q Consensus 246 ~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~ 325 (500)
++++++...+.+++.|||+...... ... .........+.++.+|++.++++++|||||||+.....+++++++.
T Consensus 224 ~~~~l~~~~~~~~~~iGP~~~~~~~-~~~-----~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~ 297 (459)
T PLN02448 224 AIDALKSKFPFPVYPIGPSIPYMEL-KDN-----SSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAA 297 (459)
T ss_pred HHHHHHhhcCCceEEecCccccccc-CCC-----ccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHH
Confidence 9999987654479999999743210 000 0000000123478999999888899999999998888999999999
Q ss_pred HHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCC
Q 010825 326 GLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWP 405 (500)
Q Consensus 326 al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 405 (500)
+|+..+.+|||+++.+ ..++.++.++|+++.+|+||.+||+|+++++|||||||||++||+++|||||++|
T Consensus 298 ~l~~~~~~~lw~~~~~---------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P 368 (459)
T PLN02448 298 GLRDSGVRFLWVARGE---------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFP 368 (459)
T ss_pred HHHhCCCCEEEEEcCc---------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEecc
Confidence 9999999999988632 1234444567899999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHhhhhhcceeEeeeCCC-CCCcCHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010825 406 FLGDQPTNCRYTCNEWGVGLEIINGGD-DNRVSRNEVEKQVRELMGGE--KGKQMRNKASKWKRFAEEATAPDGSSATNL 482 (500)
Q Consensus 406 ~~~DQ~~na~~~~~~~G~g~~~~~~~~-~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 482 (500)
+++||+.||+++++++|+|+.+....+ +..+++++|+++|+++|.++ +|+.||+++++|++++++|..+||||.+++
T Consensus 369 ~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l 448 (459)
T PLN02448 369 LFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNL 448 (459)
T ss_pred ccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999999999999766899999832111 13679999999999999863 478899999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 010825 483 EKLVNQVLLS 492 (500)
Q Consensus 483 ~~l~~~~~~~ 492 (500)
++|++++++.
T Consensus 449 ~~~v~~~~~~ 458 (459)
T PLN02448 449 DAFIRDISQG 458 (459)
T ss_pred HHHHHHHhcc
Confidence 9999999864
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=2.1e-63 Score=505.63 Aligned_cols=447 Identities=28% Similarity=0.460 Sum_probs=340.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCC----CEEEEEeCCcch----hhhhhhcCCCCCCCCCCeeEEeCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKG----FHITFVNTEFNH----RRFLKSRGEHSLGGLPSFRFEAIPDGLPA 79 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG----H~Vt~~~~~~~~----~~v~~~~~~~~~~~~~~~~f~~l~~~~~~ 79 (500)
++|.||+++|+|++||++|++.||+.|+.+| +.|||++++.+. .++........ .....++|..+|++..+
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p 79 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAVEPP 79 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCCCCC
Confidence 3577999999999999999999999999997 799999986542 12322211000 01115999999876432
Q ss_pred CCCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHH
Q 010825 80 SSDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFM 159 (500)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (500)
. .. .+...++..+.+.+ .+.++++++++. ++++|||+|.+++|+..+|+++|||++.|++++++.++
T Consensus 80 ~--~~---e~~~~~~~~~~~~~-~~~l~~~L~~l~-------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~ 146 (480)
T PLN00164 80 T--DA---AGVEEFISRYIQLH-APHVRAAIAGLS-------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLA 146 (480)
T ss_pred C--cc---ccHHHHHHHHHHhh-hHHHHHHHHhcC-------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHH
Confidence 2 11 12334455456666 788888887751 25799999999999999999999999999999998888
Q ss_pred HHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcCh
Q 010825 160 GFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTF 239 (500)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~ 239 (500)
.+.+.+......-.+... ...... +|+++.++..+++....... +...+.+....+...+++.+++|||
T Consensus 147 ~~~~~~~~~~~~~~~~~~--------~~~~~~-iPGlp~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vlvNTf 215 (480)
T PLN00164 147 LMLRLPALDEEVAVEFEE--------MEGAVD-VPGLPPVPASSLPAPVMDKK--SPNYAWFVYHGRRFMEAAGIIVNTA 215 (480)
T ss_pred HHhhhhhhcccccCcccc--------cCccee-cCCCCCCChHHCCchhcCCC--cHHHHHHHHHHHhhhhcCEEEEech
Confidence 766554321110000000 001222 78887777788886544321 1122333333455678999999999
Q ss_pred HHhhHHHHHHHhhh-------CCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccc
Q 010825 240 DALEQQVLNALSFI-------FPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSI 312 (500)
Q Consensus 240 ~~le~~~~~~~~~~-------~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~ 312 (500)
++||+.++++++.. .| +++.|||++..... + .....++++.+|||.+++++||||||||+
T Consensus 216 ~eLE~~~~~~~~~~~~~~~~~~~-~v~~vGPl~~~~~~---------~---~~~~~~~~~~~wLd~~~~~svvyvsfGS~ 282 (480)
T PLN00164 216 AELEPGVLAAIADGRCTPGRPAP-TVYPIGPVISLAFT---------P---PAEQPPHECVRWLDAQPPASVVFLCFGSM 282 (480)
T ss_pred HHhhHHHHHHHHhccccccCCCC-ceEEeCCCcccccc---------C---CCccchHHHHHHHHhCCCCceEEEEeccc
Confidence 99999999998764 25 79999999743211 0 11124567999999998889999999999
Q ss_pred cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--------CCCCCCchHHHHHhhcCcee-eeccchhHhhccCCcceeE
Q 010825 313 IIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT--------GETADLPAEFEVKAKEKGFI-ASWCPQEEVLNHPAIGGFF 383 (500)
Q Consensus 313 ~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~--------~~~~~~~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I 383 (500)
..++.+++++++.+|+..+.+|||+++..... +....+|++|.++..++..+ .+|+||.+||+|+++++||
T Consensus 283 ~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fv 362 (480)
T PLN00164 283 GFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFV 362 (480)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEE
Confidence 99999999999999999999999999864321 11123788998888777766 5999999999999999999
Q ss_pred eecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC-CCCcCHHHHHHHHHHHhCCC--hhHHHHHH
Q 010825 384 THSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD-DNRVSRNEVEKQVRELMGGE--KGKQMRNK 460 (500)
Q Consensus 384 ~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~-~~~~~~~~l~~~i~~vl~~~--~~~~~~~~ 460 (500)
|||||||++||+++|||||++|+++||+.||+++++++|+|+.+...++ +..+++++|.++|+++|.|+ +|+.+|++
T Consensus 363 tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~ 442 (480)
T PLN00164 363 THCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREK 442 (480)
T ss_pred eecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999999999999999988677999999922111 13579999999999999875 37899999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 461 ASKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 461 a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
+++|++++++|.++|||+.+++++|++++.+.
T Consensus 443 a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~~ 474 (480)
T PLN00164 443 AAEMKAACRKAVEEGGSSYAALQRLAREIRHG 474 (480)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999765
No 12
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.3e-63 Score=500.11 Aligned_cols=451 Identities=25% Similarity=0.426 Sum_probs=332.2
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC----CCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP----DGLPASSDE 83 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~----~~~~~~~~~ 83 (500)
..+.||+++|+|++||++|++.||+.|+.||+.|||++++.+..++...... ..+.++|..+| ++++++.
T Consensus 4 ~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~----~~~~i~~~~lp~p~~dglp~~~-- 77 (472)
T PLN02670 4 EEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQ----LSSSITLVSFPLPSVPGLPSSA-- 77 (472)
T ss_pred CCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhcccc----CCCCeeEEECCCCccCCCCCCc--
Confidence 4457999999999999999999999999999999999999887665532111 11258888887 6677552
Q ss_pred CCccccHH----HHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHH
Q 010825 84 SSTTQDMY----SLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFM 159 (500)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (500)
+...++. .++....+.+ .+.++++++++ +++|||+|.+++|+..+|+++|||++.|+++++..++
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~---------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~ 146 (472)
T PLN02670 78 -ESSTDVPYTKQQLLKKAFDLL-EPPLTTFLETS---------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLS 146 (472)
T ss_pred -ccccccchhhHHHHHHHHHHh-HHHHHHHHHhC---------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHH
Confidence 1122221 2343445555 77778887764 7899999999999999999999999999999888777
Q ss_pred HHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCC--CCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEc
Q 010825 160 GFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMK--DIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIH 237 (500)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 237 (500)
.+.+.......+..+.... .......++|... .+...+++.+.............+.+......+++.+++|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~------~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvN 220 (472)
T PLN02670 147 FIGPPSSLMEGGDLRSTAE------DFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIR 220 (472)
T ss_pred HHhhhHhhhhcccCCCccc------cccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEe
Confidence 6443221111111111000 0000111223222 1344566654432111111122222333445678899999
Q ss_pred ChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCH
Q 010825 238 TFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNK 317 (500)
Q Consensus 238 s~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~ 317 (500)
||++||+.++++++....++++.|||+........+ ...... ..++++.+|||++++++||||||||+..++.
T Consensus 221 Tf~eLE~~~l~~l~~~~~~~v~~VGPl~~~~~~~~~------~~~~~~-~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~ 293 (472)
T PLN02670 221 SSPEFEPEWFDLLSDLYRKPIIPIGFLPPVIEDDEE------DDTIDV-KGWVRIKEWLDKQRVNSVVYVALGTEASLRR 293 (472)
T ss_pred CHHHHhHHHHHHHHHhhCCCeEEEecCCcccccccc------cccccc-chhHHHHHHHhcCCCCceEEEEecccccCCH
Confidence 999999999999987643389999999742110000 000000 1235799999999888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCCC-CC-CCCCchHHHHHhhcCcee-eeccchhHhhccCCcceeEeecCchhHHHH
Q 010825 318 QQLIEVAMGLVNSNHPFLWIIRPDLVT-GE-TADLPAEFEVKAKEKGFI-ASWCPQEEVLNHPAIGGFFTHSGWNSTIES 394 (500)
Q Consensus 318 ~~~~~l~~al~~~~~~~v~~~~~~~~~-~~-~~~~~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HgG~~s~~ea 394 (500)
+++.+++.+|+..+++|||+++..... .. ...+|++|.++..++..+ .+|+||.+||+|+++++|||||||||++||
T Consensus 294 ~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Ea 373 (472)
T PLN02670 294 EEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEG 373 (472)
T ss_pred HHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHH
Confidence 999999999999999999999853211 11 224899999988877766 699999999999999999999999999999
Q ss_pred HhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCC
Q 010825 395 LCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAP 474 (500)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~ 474 (500)
+++|||||++|+++||+.||+++ +++|+|+++...++++.++.++|+++|+++|.|++|+.||+||+++++.+++
T Consensus 374 i~~GVP~l~~P~~~DQ~~Na~~v-~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~---- 448 (472)
T PLN02670 374 LGFGRVLILFPVLNEQGLNTRLL-HGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD---- 448 (472)
T ss_pred HHcCCCEEeCcchhccHHHHHHH-HHcCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999 6799999993222224589999999999999988778899999999999997
Q ss_pred CCChHHHHHHHHHHHHhcC
Q 010825 475 DGSSATNLEKLVNQVLLSE 493 (500)
Q Consensus 475 ~g~~~~~~~~l~~~~~~~~ 493 (500)
.+....++++|++++.++.
T Consensus 449 ~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 449 MDRNNRYVDELVHYLRENR 467 (472)
T ss_pred cchhHHHHHHHHHHHHHhc
Confidence 4666899999999998887
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.1e-62 Score=491.14 Aligned_cols=436 Identities=23% Similarity=0.359 Sum_probs=328.7
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC--CCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP--DGLPASSDESS 85 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~--~~~~~~~~~~~ 85 (500)
.+|+||+++|+|++||++|++.||+.|+.+|+.|||++++.+...+... . . ....-.+.+..+| ++++.+.+...
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~-~-~-~~~~~~v~~~~~p~~~glp~g~e~~~ 79 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHL-N-L-FPHNIVFRSVTVPHVDGLPVGTETVS 79 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhccc-c-c-CCCCceEEEEECCCcCCCCCcccccc
Confidence 5678999999999999999999999999999999999998876655432 0 0 0001137777777 67766521110
Q ss_pred c-cccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhh
Q 010825 86 T-TQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQF 164 (500)
Q Consensus 86 ~-~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (500)
. .......+....+.+ .+.++++++++ ++|+||+|. ++|+..+|+++|||++.|++++++.++.+..
T Consensus 80 ~~~~~~~~~~~~a~~~~-~~~~~~~l~~~---------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~- 147 (453)
T PLN02764 80 EIPVTSADLLMSAMDLT-RDQVEVVVRAV---------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV- 147 (453)
T ss_pred cCChhHHHHHHHHHHHh-HHHHHHHHHhC---------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-
Confidence 0 111112233333455 67788888764 779999995 8899999999999999999999987776432
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCCCCcccc--cCCchhhHHHHHHHHHhccccCcEEEEcC
Q 010825 165 RTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKD----IRIRDLPSFVR--STDSKDIMFNLCVEATENASKASAIIIHT 238 (500)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~ns 238 (500)
+ ....+ .. .|+++. ++.++++.+.. .....+.+...+.........++.+++||
T Consensus 148 ~----~~~~~-------------~~---~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNT 207 (453)
T PLN02764 148 P----GGELG-------------VP---PPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRT 207 (453)
T ss_pred c----cccCC-------------CC---CCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEec
Confidence 1 00100 00 233331 33344443211 11111223345555545667888999999
Q ss_pred hHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHH
Q 010825 239 FDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQ 318 (500)
Q Consensus 239 ~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~ 318 (500)
|++||+.++++++...+++++.|||++..... . ...++++.+|||.+++++||||||||...++.+
T Consensus 208 f~eLE~~~~~~~~~~~~~~v~~VGPL~~~~~~---------~-----~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~ 273 (453)
T PLN02764 208 AREIEGNFCDYIEKHCRKKVLLTGPVFPEPDK---------T-----RELEERWVKWLSGYEPDSVVFCALGSQVILEKD 273 (453)
T ss_pred cHHhhHHHHHHHHhhcCCcEEEeccCccCccc---------c-----ccchhHHHHHHhCCCCCceEEEeecccccCCHH
Confidence 99999999999987543379999999743210 0 012457999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhhcCcee-eeccchhHhhccCCcceeEeecCchhHHHHHh
Q 010825 319 QLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFI-ASWCPQEEVLNHPAIGGFFTHSGWNSTIESLC 396 (500)
Q Consensus 319 ~~~~l~~al~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~ 396 (500)
++.+++.+|+..+.+|+|+++.+... .....+|++|+++..++..+ .+|+||.+||+|+++++|||||||||++||++
T Consensus 274 q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~ 353 (453)
T PLN02764 274 QFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLL 353 (453)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHH
Confidence 99999999999999999999853221 11234899999998777766 59999999999999999999999999999999
Q ss_pred cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHHHhCC
Q 010825 397 AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGG--EKGKQMRNKASKWKRFAEEATAP 474 (500)
Q Consensus 397 ~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~~~~~~~~~ 474 (500)
+|||||++|+++||+.||+++++.+|+|+.+. .++.+.++.++|+++|+++|++ +.|+++|++++++++++++
T Consensus 354 ~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~-~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~---- 428 (453)
T PLN02764 354 SDCQIVLVPQLGDQVLNTRLLSDELKVSVEVA-REETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLAS---- 428 (453)
T ss_pred cCCCEEeCCcccchHHHHHHHHHHhceEEEec-cccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh----
Confidence 99999999999999999999976799999982 1111368999999999999987 4478999999999999975
Q ss_pred CCChHHHHHHHHHHHHhcCCCCC
Q 010825 475 DGSSATNLEKLVNQVLLSEGLIP 497 (500)
Q Consensus 475 ~g~~~~~~~~l~~~~~~~~~~~~ 497 (500)
+|||.+++++|++++++...+-+
T Consensus 429 ~GSS~~~l~~lv~~~~~~~~~~~ 451 (453)
T PLN02764 429 PGLLTGYVDNFIESLQDLVSGTS 451 (453)
T ss_pred cCCHHHHHHHHHHHHHHhccccc
Confidence 79999999999999998866543
No 14
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1e-62 Score=497.70 Aligned_cols=455 Identities=33% Similarity=0.569 Sum_probs=331.3
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC-----CCCCCCCCCC
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP-----DGLPASSDES 84 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~-----~~~~~~~~~~ 84 (500)
+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..++............ .++|..+| ++++.+.+..
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~-~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGL-PIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCC-CeEEEEcCCCCccCCCCCCcccc
Confidence 47999999999999999999999999999999999999887665543211000111 38888887 5777652111
Q ss_pred Cccc--cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHh
Q 010825 85 STTQ--DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFK 162 (500)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (500)
.... .+...+......+ .+.+.++++.. +.++||||+|.+++|+..+|+++|||++.|++++++..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~l-~~~l~~lL~~~-------~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~ 158 (491)
T PLN02534 87 DTLPSRDLLRKFYDAVDKL-QQPLERFLEQA-------KPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSH 158 (491)
T ss_pred ccCCcHHHHHHHHHHHHHh-HHHHHHHHHhc-------CCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHH
Confidence 1001 1222222223344 67777777653 237899999999999999999999999999999888776533
Q ss_pred hhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC---CCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcCh
Q 010825 163 QFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKD---IRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTF 239 (500)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~ 239 (500)
....- ..+.+.... ..+. .+|+++. +...+++........ .........+..+.++.+++|||
T Consensus 159 ~~~~~--~~~~~~~~~--------~~~~-~iPg~p~~~~l~~~dlp~~~~~~~~---~~~~~~~~~~~~~~a~~vlvNTf 224 (491)
T PLN02534 159 NIRLH--NAHLSVSSD--------SEPF-VVPGMPQSIEITRAQLPGAFVSLPD---LDDVRNKMREAESTAFGVVVNSF 224 (491)
T ss_pred HHHHh--cccccCCCC--------Ccee-ecCCCCccccccHHHCChhhcCccc---HHHHHHHHHhhcccCCEEEEecH
Confidence 32111 111111100 0112 2566653 555566654321111 11222233333345779999999
Q ss_pred HHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccC-CCcc-chhhhhhhhhcCCCCCceEEEeeccccccCH
Q 010825 240 DALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIG-YNLL-KEETECLQWLDSKEPNSVIYVNFGSIIIMNK 317 (500)
Q Consensus 240 ~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~ 317 (500)
++||+.++++++...+++++.|||+........+ ... .... ..+++|.+|||.+++++||||||||......
T Consensus 225 ~eLE~~~l~~l~~~~~~~v~~VGPL~~~~~~~~~------~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~ 298 (491)
T PLN02534 225 NELEHGCAEAYEKAIKKKVWCVGPVSLCNKRNLD------KFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVP 298 (491)
T ss_pred HHhhHHHHHHHHhhcCCcEEEECccccccccccc------ccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCH
Confidence 9999999999987653389999999742210000 000 0111 1235699999999888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEcCCCC-CC-CCCCCchHHHHHh-hcCceeeeccchhHhhccCCcceeEeecCchhHHHH
Q 010825 318 QQLIEVAMGLVNSNHPFLWIIRPDLV-TG-ETADLPAEFEVKA-KEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIES 394 (500)
Q Consensus 318 ~~~~~l~~al~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~ea 394 (500)
++..+++.+|+..+.+|||+++.+.. .. ....+|++|.++. +.++++.+|+||.+||+|+++++|||||||||++||
T Consensus 299 ~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea 378 (491)
T PLN02534 299 SQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEG 378 (491)
T ss_pred HHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHH
Confidence 99999999999999999999985321 11 1113688998775 456667899999999999999999999999999999
Q ss_pred HhcCCceeeCCcccchhhhHHHhhhhhcceeEeee------CCCC--C-CcCHHHHHHHHHHHhC--CChhHHHHHHHHH
Q 010825 395 LCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIIN------GGDD--N-RVSRNEVEKQVRELMG--GEKGKQMRNKASK 463 (500)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~------~~~~--~-~~~~~~l~~~i~~vl~--~~~~~~~~~~a~~ 463 (500)
+++|||||++|+++||+.||+++++.+|+|+++.. ++++ . .++.++|.++|+++|. +++|+.+|+||++
T Consensus 379 ~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~e 458 (491)
T PLN02534 379 ICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQE 458 (491)
T ss_pred HHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999999999999999999821 1111 1 4899999999999997 4558899999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010825 464 WKRFAEEATAPDGSSATNLEKLVNQVLLSE 493 (500)
Q Consensus 464 l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~ 493 (500)
|++++++|+.+||||.+++++|++++.+..
T Consensus 459 lk~~a~~Av~~GGSS~~nl~~fv~~i~~~~ 488 (491)
T PLN02534 459 LGVMARKAMELGGSSHINLSILIQDVLKQQ 488 (491)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999997643
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.5e-62 Score=491.52 Aligned_cols=443 Identities=23% Similarity=0.383 Sum_probs=333.0
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTT 87 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (500)
.+.||+++|+|++||++|++.||+.|+.+ |..|||+++..+...+............++++|..+|.....+. ....
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l--~~~~ 79 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNL--VEPD 79 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccC--CCCC
Confidence 35699999999999999999999999977 99999998876554331110000010112589999985432220 0000
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCe-EEEeccchhHHHHHhhhhh
Q 010825 88 QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPI-VLLFTISACSFMGFKQFRT 166 (500)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~-v~~~~~~~~~~~~~~~~~~ 166 (500)
.+....+....+.+ .+.++++++++. .+++|||+|.+++|+..+|+++|||+ +.+++++++.+..+++.+.
T Consensus 80 ~~~~~~~~~~~~~~-~~~~~~~l~~l~-------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~ 151 (470)
T PLN03015 80 ATIFTKMVVKMRAM-KPAVRDAVKSMK-------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPV 151 (470)
T ss_pred ccHHHHHHHHHHhc-hHHHHHHHHhcC-------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhh
Confidence 13332333344566 788999998763 26799999999999999999999995 6676777766655444433
Q ss_pred hhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHH
Q 010825 167 FKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQV 246 (500)
Q Consensus 167 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~ 246 (500)
... ..+.... ...... .+|+++.+...+++..+.... ...+...+ ...+...+++.+++|||++||+.+
T Consensus 152 ~~~--~~~~~~~------~~~~~~-~vPg~p~l~~~dlp~~~~~~~-~~~~~~~~-~~~~~~~~a~gvlvNTf~eLE~~~ 220 (470)
T PLN03015 152 LDT--VVEGEYV------DIKEPL-KIPGCKPVGPKELMETMLDRS-DQQYKECV-RSGLEVPMSDGVLVNTWEELQGNT 220 (470)
T ss_pred hhc--ccccccC------CCCCee-eCCCCCCCChHHCCHhhcCCC-cHHHHHHH-HHHHhcccCCEEEEechHHHhHHH
Confidence 211 1111000 001122 378888788888886543221 11222333 333457889999999999999999
Q ss_pred HHHHhhh-------CCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHH
Q 010825 247 LNALSFI-------FPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQ 319 (500)
Q Consensus 247 ~~~~~~~-------~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~ 319 (500)
++.++.. .+ +++.|||+.... .. . +.++++.+|||.+++++||||||||...++.++
T Consensus 221 ~~~l~~~~~~~~~~~~-~v~~VGPl~~~~------------~~-~--~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q 284 (470)
T PLN03015 221 LAALREDMELNRVMKV-PVYPIGPIVRTN------------VH-V--EKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQ 284 (470)
T ss_pred HHHHHhhcccccccCC-ceEEecCCCCCc------------cc-c--cchHHHHHHHHhCCCCCEEEEECCcCCcCCHHH
Confidence 9998774 25 699999997321 00 0 123479999999988999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCC---------CCCCCCCchHHHHHhhcCcee-eeccchhHhhccCCcceeEeecCch
Q 010825 320 LIEVAMGLVNSNHPFLWIIRPDLV---------TGETADLPAEFEVKAKEKGFI-ASWCPQEEVLNHPAIGGFFTHSGWN 389 (500)
Q Consensus 320 ~~~l~~al~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~~~~~nv~~-~~~~pq~~lL~~~~~~~~I~HgG~~ 389 (500)
.++++.+|+..+++|||+++.+.. +.....+|++|.+|..++..+ .+|+||.+||+|+++++||||||||
T Consensus 285 ~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~Gwn 364 (470)
T PLN03015 285 TVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWS 364 (470)
T ss_pred HHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCch
Confidence 999999999999999999974311 001124889999998887755 6999999999999999999999999
Q ss_pred hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCC--ChhHHHHHHHHHHHH
Q 010825 390 STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGG--EKGKQMRNKASKWKR 466 (500)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~--~~~~~~~~~a~~l~~ 466 (500)
|++||+++|||||++|+++||+.||+++++++|+|+++ +++.+ ..++.++|.++|+++|.+ ++|+++|+||++|++
T Consensus 365 S~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~-~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~ 443 (470)
T PLN03015 365 SVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRT-SELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRV 443 (470)
T ss_pred hHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEe-cccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHH
Confidence 99999999999999999999999999998899999999 32112 479999999999999963 568899999999999
Q ss_pred HHHHHhCCCCChHHHHHHHHHHH
Q 010825 467 FAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 467 ~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+.++|.++||||.+++++|++++
T Consensus 444 ~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 444 SSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHHHhcCCCcHHHHHHHHHHhc
Confidence 99999999999999999999886
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-63 Score=503.28 Aligned_cols=450 Identities=29% Similarity=0.446 Sum_probs=330.5
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCC--CEEEEEeCCcchhhhh-hhcCCCCCC--CCCCeeEEeCCCCCCCCCCCC
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRFL-KSRGEHSLG--GLPSFRFEAIPDGLPASSDES 84 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~v~-~~~~~~~~~--~~~~~~f~~l~~~~~~~~~~~ 84 (500)
|+||+++|+|++||++|++.||+.|+.+| ..|||++++.+...+. +........ ..++++|..+|++.+.. .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~--~- 78 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT--T- 78 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc--c-
Confidence 78999999999999999999999999998 8899999887643211 000000000 12359999998776432 1
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcC-CCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhh
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDS-SNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQ 163 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~-~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 163 (500)
. ...+..++ ..+ .+.+++.++++... +...+++.+|||+|.+++|+..+|+++|||++.|+++++..++.+.+
T Consensus 79 ~-~~~~~~~~----~~~-~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~ 152 (481)
T PLN02554 79 E-DPTFQSYI----DNQ-KPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLH 152 (481)
T ss_pred c-chHHHHHH----HHH-HHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHh
Confidence 1 11222223 333 44444444444211 00011234899999999999999999999999999999998887666
Q ss_pred hhhhhhcCCCCCCCccchhhhhcccccccCCCCC-CCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHh
Q 010825 164 FRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMK-DIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDAL 242 (500)
Q Consensus 164 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~l 242 (500)
.+......-.+..... ...... .+|++. .++..+++...... .+...+........+++.+++||+.+|
T Consensus 153 ~~~~~~~~~~~~~~~~-----~~~~~v-~iPgl~~pl~~~dlp~~~~~~----~~~~~~~~~~~~~~~~~gvlvNt~~eL 222 (481)
T PLN02554 153 VQMLYDEKKYDVSELE-----DSEVEL-DVPSLTRPYPVKCLPSVLLSK----EWLPLFLAQARRFREMKGILVNTVAEL 222 (481)
T ss_pred hhhhccccccCccccC-----CCCcee-ECCCCCCCCCHHHCCCcccCH----HHHHHHHHHHHhcccCCEEEEechHHH
Confidence 5432211101111000 000122 377763 56667776544321 223334444556678999999999999
Q ss_pred hHHHHHHHhh---hCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHH
Q 010825 243 EQQVLNALSF---IFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQ 319 (500)
Q Consensus 243 e~~~~~~~~~---~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~ 319 (500)
|+.+...+.. ..| +++.|||+...... ..... ...+.++.+||+++++++||||||||+..++.++
T Consensus 223 e~~~~~~l~~~~~~~~-~v~~vGpl~~~~~~---------~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~ 291 (481)
T PLN02554 223 EPQALKFFSGSSGDLP-PVYPVGPVLHLENS---------GDDSK-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQ 291 (481)
T ss_pred hHHHHHHHHhcccCCC-CEEEeCCCcccccc---------ccccc-cccchHHHHHHhcCCCCcEEEEeccccccCCHHH
Confidence 9999998875 446 89999999432110 00000 1234579999999888899999999999899999
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCC----------CCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCch
Q 010825 320 LIEVAMGLVNSNHPFLWIIRPDLV----------TGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWN 389 (500)
Q Consensus 320 ~~~l~~al~~~~~~~v~~~~~~~~----------~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~ 389 (500)
+++++.+|+..+++|||+++.... .+....+|++|.++.++|+++++|+||.+||.|+++++||||||||
T Consensus 292 ~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~n 371 (481)
T PLN02554 292 AREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWN 371 (481)
T ss_pred HHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccc
Confidence 999999999999999999975311 0111236899999999999999999999999999999999999999
Q ss_pred hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC-------CCCCCcCHHHHHHHHHHHhC-CChhHHHHHHH
Q 010825 390 STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING-------GDDNRVSRNEVEKQVRELMG-GEKGKQMRNKA 461 (500)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~-------~~~~~~~~~~l~~~i~~vl~-~~~~~~~~~~a 461 (500)
|++||+++|||||++|+++||+.||+++++++|+|+.+... ++...+++++|.++|+++|+ |++ ||+|+
T Consensus 372 S~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~---~r~~a 448 (481)
T PLN02554 372 SILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQDSD---VRKRV 448 (481)
T ss_pred hHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCCHH---HHHHH
Confidence 99999999999999999999999996544889999999311 01246899999999999997 544 99999
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 462 SKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 462 ~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
+++++++++|.++|||+..++++|++++.++
T Consensus 449 ~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 449 KEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999875
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.8e-62 Score=501.56 Aligned_cols=457 Identities=29% Similarity=0.486 Sum_probs=327.2
Q ss_pred cCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCC-C-CCCC-CCeeEEeCC---CCCCCC
Q 010825 7 ACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEH-S-LGGL-PSFRFEAIP---DGLPAS 80 (500)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~-~-~~~~-~~~~f~~l~---~~~~~~ 80 (500)
+.++.||+++|+|++||++|++.||++|+.|||+|||++++.+...+++..... . .... -.+.+..+| ++++.+
T Consensus 2 ~~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 2 NHEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CCCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 345679999999999999999999999999999999999998877665532110 0 0111 134555566 456654
Q ss_pred CCCCCc-----cccHHHHHHHHH---HhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEec
Q 010825 81 SDESST-----TQDMYSLCESIM---NNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFT 152 (500)
Q Consensus 81 ~~~~~~-----~~~~~~~~~~~~---~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (500)
.+.... ......++..+. ..+ .+.++++++. .+||+||+|.+++|+..+|+++|||++.|++
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~l~~---------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~ 151 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFLFSTKYF-KDQLEKLLET---------TRPDCLVADMFFPWATEAAEKFGVPRLVFHG 151 (482)
T ss_pred cccccccccccccchHHHHHHHHHHHHHH-HHHHHHHHhc---------CCCCEEEECCcchhHHHHHHHhCCCeEEeec
Confidence 211111 111112232222 233 3444444433 2789999999999999999999999999999
Q ss_pred cchhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC---CCcCCCCcccccCCchhhHHHHHHHHHhccc
Q 010825 153 ISACSFMGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKD---IRIRDLPSFVRSTDSKDIMFNLCVEATENAS 229 (500)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
++++.....+......+....+. . .... .+|+++. +...+++.. .....+...+....+...
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~~~--~--------~~~~-~~pg~p~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 216 (482)
T PLN03007 152 TGYFSLCASYCIRVHKPQKKVAS--S--------SEPF-VIPDLPGDIVITEEQINDA----DEESPMGKFMKEVRESEV 216 (482)
T ss_pred ccHHHHHHHHHHHhcccccccCC--C--------Ccee-eCCCCCCccccCHHhcCCC----CCchhHHHHHHHHHhhcc
Confidence 98877665443321110001110 0 0011 1455431 222233321 112223445555556678
Q ss_pred cCcEEEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEee
Q 010825 230 KASAIIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNF 309 (500)
Q Consensus 230 ~~~~~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~ 309 (500)
+++.+++|||++||+++++.++.....++++|||+........+. ...+...+..++++.+||+.+++++||||||
T Consensus 217 ~~~~vl~Nt~~~le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~----~~~~~~~~~~~~~~~~wLd~~~~~svvyvsf 292 (482)
T PLN03007 217 KSFGVLVNSFYELESAYADFYKSFVAKRAWHIGPLSLYNRGFEEK----AERGKKANIDEQECLKWLDSKKPDSVIYLSF 292 (482)
T ss_pred cCCEEEEECHHHHHHHHHHHHHhccCCCEEEEccccccccccccc----cccCCccccchhHHHHHHhcCCCCceEEEee
Confidence 889999999999999999988876543799999986432110000 0001111123467999999988889999999
Q ss_pred ccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHh-hcCceeeeccchhHhhccCCcceeEeecC
Q 010825 310 GSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKA-KEKGFIASWCPQEEVLNHPAIGGFFTHSG 387 (500)
Q Consensus 310 Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~-~~nv~~~~~~pq~~lL~~~~~~~~I~HgG 387 (500)
||+.....+++.+++.+|+..+.+|||+++..... .....+|++|.++. +.|+++.+|+||.+||+|+++++||||||
T Consensus 293 GS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G 372 (482)
T PLN03007 293 GSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCG 372 (482)
T ss_pred cCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCc
Confidence 99998889999999999999999999999864321 11223788998876 55677789999999999999999999999
Q ss_pred chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC----CCCCcCHHHHHHHHHHHhCCChhHHHHHHHHH
Q 010825 388 WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG----DDNRVSRNEVEKQVRELMGGEKGKQMRNKASK 463 (500)
Q Consensus 388 ~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~----~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 463 (500)
|||++||+++|||||++|+++||+.||+++++.+++|+.+..+. +...+++++|+++|+++|.|++|+.||+++++
T Consensus 373 ~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~ 452 (482)
T PLN03007 373 WNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKK 452 (482)
T ss_pred chHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999999999999999999999999876667777761110 12468999999999999999878889999999
Q ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 464 WKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 464 l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
|++.+++|+++||||..++++|++++.+.
T Consensus 453 ~~~~a~~a~~~gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 453 LAEMAKAAVEEGGSSFNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998753
No 18
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.5e-62 Score=490.43 Aligned_cols=422 Identities=24% Similarity=0.354 Sum_probs=314.0
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeC--C--CCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAI--P--DGLPASSDE 83 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l--~--~~~~~~~~~ 83 (500)
.+|.||+++|+|++||++|++.||+.|+++||+|||++++.+..++.+... ..+.++|..+ + ++++.+.
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a-----~~~~i~~~~l~~p~~dgLp~g~-- 74 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNL-----FPDSIVFHPLTIPPVNGLPAGA-- 74 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccC-----CCCceEEEEeCCCCccCCCCCc--
Confidence 356899999999999999999999999999999999999887776654311 1113555544 3 4566551
Q ss_pred CCccccHH----HHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHH
Q 010825 84 SSTTQDMY----SLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFM 159 (500)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 159 (500)
....++. .++....+.+ .+.++++++.+ ++||||+| ++.|+..+|+++|||++.|+++++..+.
T Consensus 75 -~~~~~l~~~l~~~~~~~~~~~-~~~l~~~L~~~---------~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~ 142 (442)
T PLN02208 75 -ETTSDIPISMDNLLSEALDLT-RDQVEAAVRAL---------RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA 142 (442)
T ss_pred -ccccchhHHHHHHHHHHHHHH-HHHHHHHHhhC---------CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH
Confidence 1122222 2233334444 56667776654 78999999 5789999999999999999999887654
Q ss_pred HHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEE
Q 010825 160 GFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKD----IRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAII 235 (500)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (500)
+.+.+. ...+ .. .|+++. ++..+++.+. .....+........+...+++.++
T Consensus 143 -~~~~~~----~~~~-------------~~---~pglp~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vl 198 (442)
T PLN02208 143 -HTHVPG----GKLG-------------VP---PPGYPSSKVLFRENDAHALA---TLSIFYKRLYHQITTGLKSCDVIA 198 (442)
T ss_pred -HHccCc----cccC-------------CC---CCCCCCcccccCHHHcCccc---ccchHHHHHHHHHHhhhccCCEEE
Confidence 232211 0000 00 233332 2344444321 111112223323334567899999
Q ss_pred EcChHHhhHHHHHHHhhhC-CCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccc
Q 010825 236 IHTFDALEQQVLNALSFIF-PLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIII 314 (500)
Q Consensus 236 ~ns~~~le~~~~~~~~~~~-p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~ 314 (500)
+|||++||+.++++++... | +++.|||++..... . ...++++.+|||.+++++||||||||...
T Consensus 199 ~Ntf~eLE~~~~~~~~~~~~~-~v~~vGpl~~~~~~-----------~---~~~~~~~~~wLd~~~~~sVvyvSfGS~~~ 263 (442)
T PLN02208 199 LRTCKEIEGKFCDYISRQYHK-KVLLTGPMFPEPDT-----------S---KPLEEQWSHFLSGFPPKSVVFCSLGSQII 263 (442)
T ss_pred EECHHHHHHHHHHHHHhhcCC-CEEEEeecccCcCC-----------C---CCCHHHHHHHHhcCCCCcEEEEecccccc
Confidence 9999999999999887654 6 89999999853210 0 01356799999999888999999999999
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhhc-CceeeeccchhHhhccCCcceeEeecCchhHH
Q 010825 315 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKE-KGFIASWCPQEEVLNHPAIGGFFTHSGWNSTI 392 (500)
Q Consensus 315 ~~~~~~~~l~~al~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~ 392 (500)
++.+++.+++.+++..+.+++|+++.+... .....+|++|.++..+ |+.+.+|+||.+||+|+++++|||||||||++
T Consensus 264 l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~ 343 (442)
T PLN02208 264 LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIW 343 (442)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHH
Confidence 999999999999888889999999854211 1123489999988765 45556999999999999999999999999999
Q ss_pred HHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHH
Q 010825 393 ESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE--KGKQMRNKASKWKRFAEE 470 (500)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~ 470 (500)
||+++|||||++|+++||+.||+++++++|+|+.+ ..++++.+++++|.++|+++|+++ .|+++|++++++++.+.+
T Consensus 344 Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~-~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~~ 422 (442)
T PLN02208 344 ESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEV-SREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILVS 422 (442)
T ss_pred HHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEe-ccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999986669999999 111112499999999999999875 388999999999999853
Q ss_pred HhCCCCChHHHHHHHHHHHHhc
Q 010825 471 ATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 471 ~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
+|||.+++++|++++.+.
T Consensus 423 ----~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 423 ----PGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ----CCcHHHHHHHHHHHHHHh
Confidence 789999999999998653
No 19
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=2.8e-62 Score=490.17 Aligned_cols=437 Identities=30% Similarity=0.485 Sum_probs=324.5
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCC--CEEEEE--eCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKG--FHITFV--NTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDES 84 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~--~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 84 (500)
.+.||+++|+|++||++|++.||+.|+.+| +.||+. .++.+...+..... ......++++|..+|++.+... ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~lp~~~~~~~-~~ 79 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYIS-SVSSSFPSITFHHLPAVTPYSS-SS 79 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhc-cccCCCCCeEEEEcCCCCCCCC-cc
Confidence 356899999999999999999999999998 566664 44332222221100 0011123699999997764220 11
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhh
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQF 164 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 164 (500)
....+....+......+ .+.+.++++++... ++++|||+|.+.+|+..+|+++|||++.|++++++.++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~-----~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~ 153 (451)
T PLN03004 80 TSRHHHESLLLEILCFS-NPSVHRTLFSLSRN-----FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYL 153 (451)
T ss_pred ccccCHHHHHHHHHHhh-hHHHHHHHHhcCCC-----CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHH
Confidence 12223333333344566 77888888876321 2569999999999999999999999999999999988876654
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhH
Q 010825 165 RTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQ 244 (500)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~ 244 (500)
+..... .|.... .+.....+|+++.+...+++.+..... +...+.+........+++.+++|||++||+
T Consensus 154 ~~~~~~--~~~~~~-------~~~~~v~iPg~p~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~ 222 (451)
T PLN03004 154 PTIDET--TPGKNL-------KDIPTVHIPGVPPMKGSDMPKAVLERD--DEVYDVFIMFGKQLSKSSGIIINTFDALEN 222 (451)
T ss_pred Hhcccc--cccccc-------ccCCeecCCCCCCCChHHCchhhcCCc--hHHHHHHHHHHHhhcccCeeeeeeHHHhHH
Confidence 432100 111000 000112378887778888887654322 223344445555667788999999999999
Q ss_pred HHHHHHhhh--CCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHH
Q 010825 245 QVLNALSFI--FPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIE 322 (500)
Q Consensus 245 ~~~~~~~~~--~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 322 (500)
.+++.++.. .+ +++.|||+...... ... .. ..+.++.+|||.+++++||||||||+..++.+++++
T Consensus 223 ~~l~~l~~~~~~~-~v~~vGPl~~~~~~---------~~~-~~-~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~e 290 (451)
T PLN03004 223 RAIKAITEELCFR-NIYPIGPLIVNGRI---------EDR-ND-NKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIE 290 (451)
T ss_pred HHHHHHHhcCCCC-CEEEEeeeccCccc---------ccc-cc-chhhHHHHHHHhCCCCceEEEEecccccCCHHHHHH
Confidence 999999774 24 79999999742210 000 11 124569999999988899999999999999999999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCC-----CCCCCCchHHHHHhhc-CceeeeccchhHhhccCCcceeEeecCchhHHHHHh
Q 010825 323 VAMGLVNSNHPFLWIIRPDLVT-----GETADLPAEFEVKAKE-KGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLC 396 (500)
Q Consensus 323 l~~al~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~-nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~ 396 (500)
++.+|+..+.+|||+++.+... .....+|++|++|..+ |+++.+|+||.+||+|+++++|||||||||++||++
T Consensus 291 la~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~ 370 (451)
T PLN03004 291 IAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVC 370 (451)
T ss_pred HHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHH
Confidence 9999999999999999853210 0112378999998865 456679999999999999999999999999999999
Q ss_pred cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCC
Q 010825 397 AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDG 476 (500)
Q Consensus 397 ~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g 476 (500)
+|||||++|+++||+.||+++++++|+|+++. .++.+.++.++|+++|+++|+|++ ||+++++++++.+.|+++||
T Consensus 371 ~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~-~~~~~~~~~e~l~~av~~vm~~~~---~r~~a~~~~~~a~~Av~~GG 446 (451)
T PLN03004 371 AGVPMVAWPLYAEQRFNRVMIVDEIKIAISMN-ESETGFVSSTEVEKRVQEIIGECP---VRERTMAMKNAAELALTETG 446 (451)
T ss_pred cCCCEEeccccccchhhHHHHHHHhCceEEec-CCcCCccCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999966689999992 111125799999999999999876 99999999999999999999
Q ss_pred ChHH
Q 010825 477 SSAT 480 (500)
Q Consensus 477 ~~~~ 480 (500)
||.+
T Consensus 447 SS~~ 450 (451)
T PLN03004 447 SSHT 450 (451)
T ss_pred CCCC
Confidence 9853
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=7.4e-62 Score=495.58 Aligned_cols=454 Identities=24% Similarity=0.407 Sum_probs=328.9
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCC---EEEEEeCCcchh-----hhhhhcCCCCCCCCCCeeEEeCCCCCCCC
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGF---HITFVNTEFNHR-----RFLKSRGEHSLGGLPSFRFEAIPDGLPAS 80 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH---~Vt~~~~~~~~~-----~v~~~~~~~~~~~~~~~~f~~l~~~~~~~ 80 (500)
++.||+++|+|++||++|++.||+.|+.+|. .||++.+..+.. .+.... ...++++|..+|++..+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~-----~~~~~i~~~~lp~~~~p~ 76 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLI-----ASEPRIRLVTLPEVQDPP 76 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcc-----cCCCCeEEEECCCCCCCc
Confidence 4569999999999999999999999999983 567776543211 121110 112369999998654221
Q ss_pred CCCCCc-cccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCC-CeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHH
Q 010825 81 SDESST-TQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNP-AVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSF 158 (500)
Q Consensus 81 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~-~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~ 158 (500)
..+. .......+..+...+ .+.++++++++..+.+..++ +++|||+|.+++|+..+|+++|||++.|++++++.+
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~ 153 (475)
T PLN02167 77 --PMELFVKASEAYILEFVKKM-VPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFL 153 (475)
T ss_pred --cccccccchHHHHHHHHHHH-HHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHH
Confidence 1110 111112233334455 56666666665321001112 469999999999999999999999999999999887
Q ss_pred HHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCC-CCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEc
Q 010825 159 MGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGM-KDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIH 237 (500)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n 237 (500)
+.+.+.+............. ...... .+|++ ..+...+++....... ..+.+....+...+++.+++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~------~~~~~~-~iPgl~~~l~~~dlp~~~~~~~----~~~~~~~~~~~~~~a~~vlvN 222 (475)
T PLN02167 154 GMMKYLPERHRKTASEFDLS------SGEEEL-PIPGFVNSVPTKVLPPGLFMKE----SYEAWVEIAERFPEAKGILVN 222 (475)
T ss_pred HHHHHHHHhccccccccccC------CCCCee-ECCCCCCCCChhhCchhhhCcc----hHHHHHHHHHhhcccCEeeec
Confidence 76554432211100000000 001122 26777 3466666665332211 122233444456788999999
Q ss_pred ChHHhhHHHHHHHhhh---CCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccc
Q 010825 238 TFDALEQQVLNALSFI---FPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIII 314 (500)
Q Consensus 238 s~~~le~~~~~~~~~~---~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~ 314 (500)
||++||+.++++++.. .| +++.|||++....... . .++ ...+.++.+||+.+++++||||||||+..
T Consensus 223 Tf~eLE~~~~~~l~~~~~~~p-~v~~vGpl~~~~~~~~-~-----~~~---~~~~~~~~~wld~~~~~svvyvsfGS~~~ 292 (475)
T PLN02167 223 SFTELEPNAFDYFSRLPENYP-PVYPVGPILSLKDRTS-P-----NLD---SSDRDRIMRWLDDQPESSVVFLCFGSLGS 292 (475)
T ss_pred cHHHHHHHHHHHHHhhcccCC-eeEEeccccccccccC-C-----CCC---cchhHHHHHHHhcCCCCceEEEeeccccc
Confidence 9999999999998654 46 8999999975321100 0 111 11235799999999888999999999988
Q ss_pred cCHHHHHHHHHHHHhCCCCEEEEEcCCCCC--CCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHH
Q 010825 315 MNKQQLIEVAMGLVNSNHPFLWIIRPDLVT--GETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTI 392 (500)
Q Consensus 315 ~~~~~~~~l~~al~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~ 392 (500)
++.+++.+++.+|+..+++|||+++.+... .....+|++|.+++.+++++++|+||.+||+|+++++|||||||||++
T Consensus 293 ~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~ 372 (475)
T PLN02167 293 LPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVL 372 (475)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHH
Confidence 899999999999999999999999853211 112348899999998899999999999999999999999999999999
Q ss_pred HHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC--C-CCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 010825 393 ESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG--D-DNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAE 469 (500)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~--~-~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 469 (500)
||+++|||||++|+++||+.||+++++++|+|+.+.... + +..+++++|.++|+++|.+++ .||++++++++.++
T Consensus 373 Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~--~~r~~a~~~~~~~~ 450 (475)
T PLN02167 373 ESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGED--VPRKKVKEIAEAAR 450 (475)
T ss_pred HHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHH
Confidence 999999999999999999999987547899999993210 1 135799999999999998652 49999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHhcC
Q 010825 470 EATAPDGSSATNLEKLVNQVLLSE 493 (500)
Q Consensus 470 ~~~~~~g~~~~~~~~l~~~~~~~~ 493 (500)
+|.++||||.+++++|++++..-+
T Consensus 451 ~av~~gGsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 451 KAVMDGGSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred HHHhCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999997654
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.9e-61 Score=483.41 Aligned_cols=423 Identities=25% Similarity=0.328 Sum_probs=314.3
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeC--C--CCCCCCCCCCC
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAI--P--DGLPASSDESS 85 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l--~--~~~~~~~~~~~ 85 (500)
+.||+++|+|++||++|++.||+.|+++|++|||++++.+...+..... ..+.++|..+ | ++++.+ .+
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~-----~~~~i~~~~i~lP~~dGLP~g---~e 75 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNL-----FPDSIVFEPLTLPPVDGLPFG---AE 75 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccccc-----CCCceEEEEecCCCcCCCCCc---cc
Confidence 5699999999999999999999999999999999999887766654311 1124777444 3 566655 12
Q ss_pred ccccHH----HHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHH
Q 010825 86 TTQDMY----SLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGF 161 (500)
Q Consensus 86 ~~~~~~----~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~ 161 (500)
...++. ..+......+ .+.++++++.. +||+||+|. ++|+..+|+++|||++.|++++++.++.+
T Consensus 76 ~~~~l~~~~~~~~~~a~~~l-~~~l~~~L~~~---------~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~ 144 (446)
T PLN00414 76 TASDLPNSTKKPIFDAMDLL-RDQIEAKVRAL---------KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMV 144 (446)
T ss_pred ccccchhhHHHHHHHHHHHH-HHHHHHHHhcC---------CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHH
Confidence 222221 1122222333 45555555432 789999995 88999999999999999999999887765
Q ss_pred hhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCC----CCcCCC--CcccccCCchhhHHHHHHHHHhccccCcEEE
Q 010825 162 KQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKD----IRIRDL--PSFVRSTDSKDIMFNLCVEATENASKASAII 235 (500)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 235 (500)
.+.. . .... | .|+++. +...+. +.++.. ....+.+..+...+++.++
T Consensus 145 ~~~~-~-~~~~-~------------------~pg~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~vl 197 (446)
T PLN00414 145 LAPR-A-ELGF-P------------------PPDYPLSKVALRGHDANVCSLFAN------SHELFGLITKGLKNCDVVS 197 (446)
T ss_pred hCcH-h-hcCC-C------------------CCCCCCCcCcCchhhcccchhhcc------cHHHHHHHHHhhccCCEEE
Confidence 4411 0 0000 0 122221 111111 111110 1123333445567789999
Q ss_pred EcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeecccccc
Q 010825 236 IHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIM 315 (500)
Q Consensus 236 ~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~ 315 (500)
+|||++||+.++++++...+++++.|||+..... . . .....++++.+|||.+++++||||||||....
T Consensus 198 vNTf~eLE~~~~~~~~~~~~~~v~~VGPl~~~~~----------~-~-~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~ 265 (446)
T PLN00414 198 IRTCVELEGNLCDFIERQCQRKVLLTGPMLPEPQ----------N-K-SGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFF 265 (446)
T ss_pred EechHHHHHHHHHHHHHhcCCCeEEEcccCCCcc----------c-c-cCcccHHHHHHHHhcCCCCceEEEeecccccC
Confidence 9999999999999998865437999999974321 0 0 00012356899999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCCCCC-CCCCCCchHHHHHhhcCceee-eccchhHhhccCCcceeEeecCchhHHH
Q 010825 316 NKQQLIEVAMGLVNSNHPFLWIIRPDLVT-GETADLPAEFEVKAKEKGFIA-SWCPQEEVLNHPAIGGFFTHSGWNSTIE 393 (500)
Q Consensus 316 ~~~~~~~l~~al~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~nv~~~-~~~pq~~lL~~~~~~~~I~HgG~~s~~e 393 (500)
..+++.+++.+|+..+.+|+|++...... .....+|++|.+++.++..++ +|+||.+||+|+++++|||||||||++|
T Consensus 266 ~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~E 345 (446)
T PLN00414 266 EKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWE 345 (446)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHH
Confidence 99999999999999999999999864211 112348999999998888774 9999999999999999999999999999
Q ss_pred HHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHHH
Q 010825 394 SLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE--KGKQMRNKASKWKRFAEEA 471 (500)
Q Consensus 394 al~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~--~~~~~~~~a~~l~~~~~~~ 471 (500)
|+++|||||++|++.||+.||+++++++|+|+++. +++++.+++++|+++|+++|.++ .|++||++++++++.+.+
T Consensus 346 a~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~-~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~- 423 (446)
T PLN00414 346 SLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQ-REDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS- 423 (446)
T ss_pred HHHcCCCEEecCcccchHHHHHHHHHHhCeEEEec-cccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc-
Confidence 99999999999999999999999976899999992 11113599999999999999864 378899999999999864
Q ss_pred hCCCCChHHHHHHHHHHHHhcCCC
Q 010825 472 TAPDGSSATNLEKLVNQVLLSEGL 495 (500)
Q Consensus 472 ~~~~g~~~~~~~~l~~~~~~~~~~ 495 (500)
+||++ ..+++|+++++..+.+
T Consensus 424 --~gg~s-s~l~~~v~~~~~~~~~ 444 (446)
T PLN00414 424 --PGLLS-GYADKFVEALENEVNN 444 (446)
T ss_pred --CCCcH-HHHHHHHHHHHHhccc
Confidence 67744 4599999999766543
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.3e-53 Score=433.85 Aligned_cols=418 Identities=16% Similarity=0.215 Sum_probs=297.3
Q ss_pred CcEEEEE-cCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC---CCCC---CCC
Q 010825 10 KVHAVCI-PSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD---GLPA---SSD 82 (500)
Q Consensus 10 ~~~il~~-~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~---~~~~---~~~ 82 (500)
..||+++ |.++.||+..+.+|+++|++|||+||++++...... .. ....++..+.++. .... ...
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~-~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYY-AS-------HLCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEeccccccc-cc-------CCCCCEEEEEcCCChHHHHHHHhhhh
Confidence 4568765 889999999999999999999999999988542110 00 0122455544431 1000 000
Q ss_pred CCCc---cccH----HHHHHHHHHhc----cchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHh-CCCeEEE
Q 010825 83 ESST---TQDM----YSLCESIMNNV----MLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQL-GLPIVLL 150 (500)
Q Consensus 83 ~~~~---~~~~----~~~~~~~~~~~----~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~ 150 (500)
.... ..+. ......+...| ..+.+.++++. ++. +||+||+|.+..|++.+|+++ ++|+|.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~-~~~------kFDlvi~e~~~~c~~~la~~~~~~p~i~~ 164 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN-KNN------KFDLLVTEAFLDYPLVFSHLFGDAPVIQI 164 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc-CCC------ceeEEEecccchhHHHHHHHhCCCCEEEE
Confidence 0000 0000 11112223334 12334444431 133 899999999888999999999 9999888
Q ss_pred eccchhHHHHHhhhh-hhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCccccc---CCchhhHHHHHH----
Q 010825 151 FTISACSFMGFKQFR-TFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRS---TDSKDIMFNLCV---- 222 (500)
Q Consensus 151 ~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---- 222 (500)
++........ .... .+.+++|.|..... +.+.|++++|+.|+........... ....+...+++.
T Consensus 165 ss~~~~~~~~-~~~gg~p~~~syvP~~~~~------~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~ 237 (507)
T PHA03392 165 SSGYGLAENF-ETMGAVSRHPVYYPNLWRS------KFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTP 237 (507)
T ss_pred cCCCCchhHH-HhhccCCCCCeeeCCcccC------CCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Confidence 7765543332 3333 67778898887665 4457888888877432111111000 011111222221
Q ss_pred HHHhccccCcEEEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCC
Q 010825 223 EATENASKASAIIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPN 302 (500)
Q Consensus 223 ~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 302 (500)
...+..++.+++++|+++.++++ ++..| ++++|||++..+.+ ....++++.+|++.++ +
T Consensus 238 ~~~~l~~~~~l~lvns~~~~d~~-----rp~~p-~v~~vGgi~~~~~~--------------~~~l~~~l~~fl~~~~-~ 296 (507)
T PHA03392 238 TIRELRNRVQLLFVNVHPVFDNN-----RPVPP-SVQYLGGLHLHKKP--------------PQPLDDYLEEFLNNST-N 296 (507)
T ss_pred CHHHHHhCCcEEEEecCccccCC-----CCCCC-CeeeecccccCCCC--------------CCCCCHHHHHHHhcCC-C
Confidence 23455678899999999888888 99999 99999999864311 0124567899998874 5
Q ss_pred ceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCc
Q 010825 303 SVIYVNFGSII---IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAI 379 (500)
Q Consensus 303 ~vV~vs~Gs~~---~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~ 379 (500)
++|||||||++ .++.+.++.+++++++.+.+|||+++.+... ...|+|+++.+|+||.+||+|+.+
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~-----------~~~p~Nv~i~~w~Pq~~lL~hp~v 365 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEA-----------INLPANVLTQKWFPQRAVLKHKNV 365 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCc-----------ccCCCceEEecCCCHHHHhcCCCC
Confidence 79999999985 3578899999999999999999999754321 123679999999999999999999
Q ss_pred ceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHH
Q 010825 380 GGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMR 458 (500)
Q Consensus 380 ~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~ 458 (500)
++||||||+||++||+++|||+|++|+++||+.||+|+ +++|+|+.+ + ..+++++|.++|+++++|++ ||
T Consensus 366 ~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv-~~~G~G~~l-----~~~~~t~~~l~~ai~~vl~~~~---y~ 436 (507)
T PHA03392 366 KAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY-VELGIGRAL-----DTVTVSAAQLVLAIVDVIENPK---YR 436 (507)
T ss_pred CEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH-HHcCcEEEe-----ccCCcCHHHHHHHHHHHhCCHH---HH
Confidence 99999999999999999999999999999999999999 689999999 7 68999999999999999988 99
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010825 459 NKASKWKRFAEEATAPDGSSATNLEKLVNQVLLSE 493 (500)
Q Consensus 459 ~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~ 493 (500)
+||+++++.+++ ..-+..+.+..-++.+.++.
T Consensus 437 ~~a~~ls~~~~~---~p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 437 KNLKELRHLIRH---QPMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCC
Confidence 999999999997 23234455556667777665
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.3e-54 Score=451.97 Aligned_cols=412 Identities=24% Similarity=0.370 Sum_probs=247.5
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcc---c
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTT---Q 88 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~---~ 88 (500)
||+++|. ++||+.++..|+++|++|||+||++++.... .+... ....+++..++...+......... .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFIS 72 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHHH
Confidence 6888884 8899999999999999999999999985432 12111 122466666654443320001000 0
Q ss_pred ----------cHHHHHHH-------HHHhccchHH--HHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 89 ----------DMYSLCES-------IMNNVMLHPF--LDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 89 ----------~~~~~~~~-------~~~~~~~~~l--~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
.+...+.. ....| ...+ .++++.++.. ++|++|+|.+.+|+..+|+.+|+|.+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~l~d~~l~~~l~~~------~fDlvI~d~f~~c~~~la~~l~iP~i~ 145 (500)
T PF00201_consen 73 KFFSESSFANSFWEMFKMLNAFFDFFSKSC-EDLLSDPELMEQLKSE------KFDLVISDAFDPCGLALAHYLGIPVII 145 (500)
T ss_dssp HHHHHHCCHHHHHHHHHHHHCHHHS----E---EEEETTSTTHHHHH------HHCT-EEEEEESSHHHHHHHHHHTHHH
T ss_pred HHhhhcccchhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhh------ccccceEeeccchhHHHHHHhcCCeEE
Confidence 01111111 12222 1111 1222333333 899999999988999999999999998
Q ss_pred EeccchhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCc----ccccC---CchhhHHHHHH
Q 010825 150 LFTISACSFMGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPS----FVRST---DSKDIMFNLCV 222 (500)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~ 222 (500)
+.++...........+.+.+++|.|..... +.+.|++++|+.|........ ..... ...+.+... .
T Consensus 146 ~~s~~~~~~~~~~~~g~p~~psyvP~~~s~------~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 218 (500)
T PF00201_consen 146 ISSSTPMYDLSSFSGGVPSPPSYVPSMFSD------FSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP-F 218 (500)
T ss_dssp HHHCCSCSCCTCCTSCCCTSTTSTTCBCCC------SGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G-G
T ss_pred EecccccchhhhhccCCCCChHHhcccccc------CCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc-c
Confidence 765544333222222556677888876654 456788888877643211100 00000 000000000 0
Q ss_pred HHHhccccCcEEEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCC
Q 010825 223 EATENASKASAIIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPN 302 (500)
Q Consensus 223 ~~~~~~~~~~~~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 302 (500)
...+.+.+.+++++|+++.++.| +|..| ++++|||++..+.+ + .+.++..|++...++
T Consensus 219 ~~~~~~~~~~l~l~ns~~~ld~p-----rp~~p-~v~~vGgl~~~~~~---------~-------l~~~~~~~~~~~~~~ 276 (500)
T PF00201_consen 219 SFRELLSNASLVLINSHPSLDFP-----RPLLP-NVVEVGGLHIKPAK---------P-------LPEELWNFLDSSGKK 276 (500)
T ss_dssp GCHHHHHHHHHCCSSTEEE---------HHHHC-TSTTGCGC-S-------------T-------CHHHHHHHTSTTTTT
T ss_pred ccHHHHHHHHHHhhhccccCcCC-----cchhh-cccccCcccccccc---------c-------cccccchhhhccCCC
Confidence 11233456778899999888887 99999 99999999865432 1 355688999985567
Q ss_pred ceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 303 SVIYVNFGSIII-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 303 ~vV~vs~Gs~~~-~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
++|||||||.+. ++.+..+.+++++++.+.+|||++++. .+. .+++|+++.+|+||.+||.|+++++
T Consensus 277 ~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~--------~~~----~l~~n~~~~~W~PQ~~lL~hp~v~~ 344 (500)
T PF00201_consen 277 GVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE--------PPE----NLPKNVLIVKWLPQNDLLAHPRVKL 344 (500)
T ss_dssp EEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS--------HGC----HHHTTEEEESS--HHHHHTSTTEEE
T ss_pred CEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc--------ccc----cccceEEEeccccchhhhhccccee
Confidence 999999999974 455558889999999999999999862 112 2478999999999999999999999
Q ss_pred eEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNK 460 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~ 460 (500)
||||||+||++||+++|||||++|+++||+.||+++ ++.|+|+.+ + ..+|+++|.++|+++|+|++ |++|
T Consensus 345 fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~-~~~G~g~~l-----~~~~~~~~~l~~ai~~vl~~~~---y~~~ 415 (500)
T PF00201_consen 345 FITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV-EEKGVGVVL-----DKNDLTEEELRAAIREVLENPS---YKEN 415 (500)
T ss_dssp EEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH-HHTTSEEEE-----GGGC-SHHHHHHHHHHHHHSHH---HHHH
T ss_pred eeeccccchhhhhhhccCCccCCCCcccCCccceEE-EEEeeEEEE-----EecCCcHHHHHHHHHHHHhhhH---HHHH
Confidence 999999999999999999999999999999999999 689999999 8 68999999999999999998 9999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 461 ASKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 461 a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
|+++++.+++.+ -+..+.+..-+|++.++
T Consensus 416 a~~ls~~~~~~p---~~p~~~~~~~ie~v~~~ 444 (500)
T PF00201_consen 416 AKRLSSLFRDRP---ISPLERAVWWIEYVARH 444 (500)
T ss_dssp HHHHHHTTT-----------------------
T ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHhc
Confidence 999999999732 23333344444455544
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=9.7e-43 Score=351.56 Aligned_cols=365 Identities=18% Similarity=0.264 Sum_probs=251.8
Q ss_pred EcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC-ccccHHHHH
Q 010825 16 IPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS-TTQDMYSLC 94 (500)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~-~~~~~~~~~ 94 (500)
+.+|++||++|++.||++|.+|||+|+|++++.+.+.+++. ++.|..++........... ...++....
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEAA----------GAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHHc----------CCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999999998886 7888888765433100000 002333444
Q ss_pred HHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhhhcCCCC
Q 010825 95 ESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFP 174 (500)
Q Consensus 95 ~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 174 (500)
+.+...+ ...+..+.+.+... +||+||+|.+++++..+|+++|||+|.+++.+... ..++... .|
T Consensus 71 ~~~~~~~-~~~~~~l~~~~~~~------~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~ 135 (392)
T TIGR01426 71 EKLLDEA-EDVLPQLEEAYKGD------RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SP 135 (392)
T ss_pred HHHHHHH-HHHHHHHHHHhcCC------CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----cc
Confidence 4444444 44555555555444 89999999988899999999999999886443211 0011000 01
Q ss_pred CCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHH-------h-ccccCcEEEEcChHHhhHHH
Q 010825 175 VDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEAT-------E-NASKASAIIIHTFDALEQQV 246 (500)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~l~ns~~~le~~~ 246 (500)
.. .. .+...+ ... ..... ..+...+...... . .....+..+..+...|+++
T Consensus 136 ~~-~~---------~~~~~~-~~~---~~~~~------~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~- 194 (392)
T TIGR01426 136 AG-EG---------SAEEGA-IAE---RGLAE------YVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA- 194 (392)
T ss_pred cc-hh---------hhhhhc-ccc---chhHH------HHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-
Confidence 10 00 000000 000 00000 0000001111000 0 0112223455554444443
Q ss_pred HHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHH
Q 010825 247 LNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMG 326 (500)
Q Consensus 247 ~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~a 326 (500)
.+.+|.+++++||+.....+ ...|....+++++||||+||+.......++.++++
T Consensus 195 ----~~~~~~~~~~~Gp~~~~~~~---------------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~a 249 (392)
T TIGR01426 195 ----GETFDDSFTFVGPCIGDRKE---------------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEA 249 (392)
T ss_pred ----ccccCCCeEEECCCCCCccc---------------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHH
Confidence 55566589999997643211 12366655667899999999876666788889999
Q ss_pred HHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCc
Q 010825 327 LVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPF 406 (500)
Q Consensus 327 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 406 (500)
+...+.++||..+.+... +.+ ...++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|.
T Consensus 250 l~~~~~~~i~~~g~~~~~-------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~ 319 (392)
T TIGR01426 250 FRDLDWHVVLSVGRGVDP-------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQ 319 (392)
T ss_pred HhcCCCeEEEEECCCCCh-------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCC
Confidence 999999999988654211 111 224679999999999999999998 9999999999999999999999999
Q ss_pred ccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q 010825 407 LGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEE 470 (500)
Q Consensus 407 ~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 470 (500)
..||+.||+++ +++|+|..+ . ..+++++|.++|.++|+|++ |+++++++++.++.
T Consensus 320 ~~dq~~~a~~l-~~~g~g~~l-----~~~~~~~~~l~~ai~~~l~~~~---~~~~~~~l~~~~~~ 375 (392)
T TIGR01426 320 GADQPMTARRI-AELGLGRHL-----PPEEVTAEKLREAVLAVLSDPR---YAERLRKMRAEIRE 375 (392)
T ss_pred cccHHHHHHHH-HHCCCEEEe-----ccccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHH
Confidence 99999999999 689999999 6 57899999999999999987 99999999999997
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.9e-42 Score=351.02 Aligned_cols=380 Identities=16% Similarity=0.162 Sum_probs=250.3
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC-----
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS----- 85 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~----- 85 (500)
|||+|++.|+.||++|++.||++|++|||+|+|++++.+...+++. +++|..+++..........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~~----------G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEAA----------GLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHHc----------CCceeeCCCCHHHHHhhhhhcccc
Confidence 6999999999999999999999999999999999999988888775 7888888754322100000
Q ss_pred ---ccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHh
Q 010825 86 ---TTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFK 162 (500)
Q Consensus 86 ---~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~ 162 (500)
...........+...+ ...++++++.+... +||+||+|.+.+++..+|+++|||++.+++++......
T Consensus 71 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~-- 141 (401)
T cd03784 71 LLLGPGLLLGALRLLRREA-EAMLDDLVAAARDW------GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSA-- 141 (401)
T ss_pred cccchHHHHHHHHHHHHHH-HHHHHHHHHHhccc------CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCcccc--
Confidence 0111222333344444 55566666665444 99999999988899999999999999998765432110
Q ss_pred hhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhcc--c-------cCcE
Q 010825 163 QFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENA--S-------KASA 233 (500)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~ 233 (500)
..|.. ..... . ......................... . ..+.
T Consensus 142 ---------~~~~~--~~~~~----------------~---~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~ 191 (401)
T cd03784 142 ---------FPPPL--GRANL----------------R---LYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVP 191 (401)
T ss_pred ---------CCCcc--chHHH----------------H---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCc
Confidence 00000 00000 0 0000000000000000111111100 0 1111
Q ss_pred EEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeecccc
Q 010825 234 IIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSII 313 (500)
Q Consensus 234 ~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~ 313 (500)
.+....+.+.+ +.+.++.+...+|+...... . ....+.++..|++.. +++||||+||+.
T Consensus 192 ~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~~-----------~---~~~~~~~~~~~~~~~--~~~v~v~~Gs~~ 250 (401)
T cd03784 192 ELYGFSPAVLP-----PPPDWPRFDLVTGYGFRDVP-----------Y---NGPPPPELWLFLAAG--RPPVYVGFGSMV 250 (401)
T ss_pred EEEecCcccCC-----CCCCccccCcEeCCCCCCCC-----------C---CCCCCHHHHHHHhCC--CCcEEEeCCCCc
Confidence 12211111112 24445546667753221111 0 012345577788653 579999999997
Q ss_pred c-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHH
Q 010825 314 I-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTI 392 (500)
Q Consensus 314 ~-~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~ 392 (500)
. .....+..+++++...+.++||+++...... ...++|+++.+|+||.++|+++++ ||||||+||++
T Consensus 251 ~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~----------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~ 318 (401)
T cd03784 251 VRDPEALARLDVEAVATLGQRAILSLGWGGLGA----------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTA 318 (401)
T ss_pred ccCHHHHHHHHHHHHHHcCCeEEEEccCccccc----------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHH
Confidence 5 3456778899999999999999987543211 123679999999999999999998 99999999999
Q ss_pred HHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHH
Q 010825 393 ESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEA 471 (500)
Q Consensus 393 eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~ 471 (500)
||+++|||+|++|+..||+.||+++ +++|+|+.+ + ..+++++|.++|.++++++ ++++++++++.+++
T Consensus 319 eal~~GvP~v~~P~~~dQ~~~a~~~-~~~G~g~~l-----~~~~~~~~~l~~al~~~l~~~----~~~~~~~~~~~~~~- 387 (401)
T cd03784 319 AALRAGVPQLVVPFFGDQPFWAARV-AELGAGPAL-----DPRELTAERLAAALRRLLDPP----SRRRAAALLRRIRE- 387 (401)
T ss_pred HHHHcCCCEEeeCCCCCcHHHHHHH-HHCCCCCCC-----CcccCCHHHHHHHHHHHhCHH----HHHHHHHHHHHHHh-
Confidence 9999999999999999999999999 689999999 6 5689999999999999965 66777777777765
Q ss_pred hCCCCChHHHHHHHHH
Q 010825 472 TAPDGSSATNLEKLVN 487 (500)
Q Consensus 472 ~~~~g~~~~~~~~l~~ 487 (500)
.+| ...+.++|+
T Consensus 388 --~~g--~~~~~~~ie 399 (401)
T cd03784 388 --EDG--VPSAADVIE 399 (401)
T ss_pred --ccC--HHHHHHHHh
Confidence 334 344444444
No 26
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=6.6e-43 Score=364.09 Aligned_cols=410 Identities=30% Similarity=0.478 Sum_probs=263.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCC---CCCCCeeEEeCCCCCCCCCCCCCc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSL---GGLPSFRFEAIPDGLPASSDESST 86 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~---~~~~~~~f~~l~~~~~~~~~~~~~ 86 (500)
+.+++++++|++||++|++.+|+.|+++||+||++.+.......... ..... .....+.+...++.++.. ...
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 80 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEG---WED 80 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccc---hHH
Confidence 56889999999999999999999999999999999987765443221 00000 000112222222233333 111
Q ss_pred c-ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhC-CCeEEEeccchhHHHHHhhh
Q 010825 87 T-QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLG-LPIVLLFTISACSFMGFKQF 164 (500)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~ 164 (500)
. .........+...| ...+.+....+... .+.+||++|+|.+..+...+|...+ ++...+.+..+.....
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---- 152 (496)
T KOG1192|consen 81 DDLDISESLLELNKTC-EDLLRDPLEKLLLL---KSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL---- 152 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhchHHHHHHh---hcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----
Confidence 1 01111134445555 55554433332211 0114999999998667777777665 8888877666655432
Q ss_pred hhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCch----hhHHHHH-------HHHHhccccCcE
Q 010825 165 RTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSK----DIMFNLC-------VEATENASKASA 233 (500)
Q Consensus 165 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~ 233 (500)
..+.+..+.|...... ....+.+..+..++....++......... ....... ....+...+.+.
T Consensus 153 g~~~~~~~~p~~~~~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 227 (496)
T KOG1192|consen 153 GLPSPLSYVPSPFSLS-----SGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASF 227 (496)
T ss_pred CCcCcccccCcccCcc-----ccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeE
Confidence 2222223455433221 00233333333332222222211110000 0000000 111234566778
Q ss_pred EEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCC--ceEEEeecc
Q 010825 234 IIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPN--SVIYVNFGS 311 (500)
Q Consensus 234 ~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vV~vs~Gs 311 (500)
.++|+.+.++.+ +++..+ ++++|||++...... +. ...++|++..+.. ++|||||||
T Consensus 228 ~~ln~~~~~~~~----~~~~~~-~v~~IG~l~~~~~~~--------------~~--~~~~~wl~~~~~~~~~vvyvSfGS 286 (496)
T KOG1192|consen 228 IFLNSNPLLDFE----PRPLLP-KVIPIGPLHVKDSKQ--------------KS--PLPLEWLDILDESRHSVVYISFGS 286 (496)
T ss_pred EEEccCcccCCC----CCCCCC-CceEECcEEecCccc--------------cc--cccHHHHHHHhhccCCeEEEECCc
Confidence 888887766662 155567 999999998653210 00 0245677655443 899999999
Q ss_pred cc---ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHh-hccCCcceeEeec
Q 010825 312 II---IMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEV-LNHPAIGGFFTHS 386 (500)
Q Consensus 312 ~~---~~~~~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~l-L~~~~~~~~I~Hg 386 (500)
++ .++.++...++.+++.. +.+|+|+++...... +++++.++.++||.+.+|+||.++ |.|+++++|||||
T Consensus 287 ~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~----~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHg 362 (496)
T KOG1192|consen 287 MVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIY----FPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHG 362 (496)
T ss_pred ccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchh----hhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECC
Confidence 98 79999999999999999 888999998653211 122222112457888999999998 5999999999999
Q ss_pred CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010825 387 GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWK 465 (500)
Q Consensus 387 G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 465 (500)
|+|||+|++++|||+|++|+++||+.||++++ +.|.|..+ + .+++.+.+..++.+++++++ |++++++++
T Consensus 363 G~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~-~~g~~~v~-----~~~~~~~~~~~~~~~~il~~~~---y~~~~~~l~ 433 (496)
T KOG1192|consen 363 GWNSTLESIYSGVPMVCVPLFGDQPLNARLLV-RHGGGGVL-----DKRDLVSEELLEAIKEILENEE---YKEAAKRLS 433 (496)
T ss_pred cccHHHHHHhcCCceecCCccccchhHHHHHH-hCCCEEEE-----ehhhcCcHHHHHHHHHHHcChH---HHHHHHHHH
Confidence 99999999999999999999999999999995 56666666 4 56777669999999999998 999999999
Q ss_pred HHHHH
Q 010825 466 RFAEE 470 (500)
Q Consensus 466 ~~~~~ 470 (500)
+.+++
T Consensus 434 ~~~~~ 438 (496)
T KOG1192|consen 434 EILRD 438 (496)
T ss_pred HHHHc
Confidence 99986
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-40 Score=328.34 Aligned_cols=394 Identities=19% Similarity=0.246 Sum_probs=248.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcccc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQD 89 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (500)
+|||+++..|+.||++|+++|+++|.++||+|+|++++.+.+.+++. ++.|..++...... +......+
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~a----------g~~f~~~~~~~~~~-~~~~~~~~ 69 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEAA----------GLAFVAYPIRDSEL-ATEDGKFA 69 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHHh----------CcceeeccccCChh-hhhhhhhh
Confidence 47999999999999999999999999999999999999999999997 66777776431111 01111111
Q ss_pred HHH-HHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhh
Q 010825 90 MYS-LCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFK 168 (500)
Q Consensus 90 ~~~-~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (500)
... +.. ..... .....++++-+.+. .+|+++.|...+.+ .+++..++|++.......+...... .+
T Consensus 70 ~~~~~~~-~~~~~-~~~~~~~~~~~~e~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 136 (406)
T COG1819 70 GVKSFRR-LLQQF-KKLIRELLELLREL------EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAG-LP--- 136 (406)
T ss_pred ccchhHH-Hhhhh-hhhhHHHHHHHHhc------chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccc-cC---
Confidence 111 121 22222 33334444444443 89999999866655 8899999999986444322211100 00
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccc--c-CcEEEEcChHHhhHH
Q 010825 169 EKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENAS--K-ASAIIIHTFDALEQQ 245 (500)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~ns~~~le~~ 245 (500)
.++....+ .+. .+. ..+......+......+ ...... +....+. . .-..+..+-..++..
T Consensus 137 ---~~~~~~~~---------~~~-~~~-~~~~~~~~~~~~~~~~~--~~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (406)
T COG1819 137 ---LPPVGIAG---------KLP-IPL-YPLPPRLVRPLIFARSW--LPKLVV-RRNLGLELGLPNIRRLFASGPLLEIA 199 (406)
T ss_pred ---cccccccc---------ccc-ccc-cccChhhccccccchhh--hhhhhh-hhhccccccccchHHHhcCCCCcccc
Confidence 00000000 000 000 00000000000000000 000000 0000000 0 000011111111111
Q ss_pred HHHHHh---hhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHH
Q 010825 246 VLNALS---FIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIE 322 (500)
Q Consensus 246 ~~~~~~---~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~ 322 (500)
+.+... ...|....++||+..... .++..|.. .++++||+|+||.... .++++.
T Consensus 200 ~~~~~~~~~~~~p~~~~~~~~~~~~~~--------------------~~~~~~~~--~d~~~vyvslGt~~~~-~~l~~~ 256 (406)
T COG1819 200 YTDVLFPPGDRLPFIGPYIGPLLGEAA--------------------NELPYWIP--ADRPIVYVSLGTVGNA-VELLAI 256 (406)
T ss_pred ccccccCCCCCCCCCcCcccccccccc--------------------ccCcchhc--CCCCeEEEEcCCcccH-HHHHHH
Confidence 111000 112324456666653321 22333432 2468999999999866 889999
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCcee
Q 010825 323 VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMI 402 (500)
Q Consensus 323 l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 402 (500)
+++++..++.++|...+. .... ....|.|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|
T Consensus 257 ~~~a~~~l~~~vi~~~~~-~~~~---------~~~~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~v 324 (406)
T COG1819 257 VLEALADLDVRVIVSLGG-ARDT---------LVNVPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLV 324 (406)
T ss_pred HHHHHhcCCcEEEEeccc-cccc---------cccCCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEE
Confidence 999999999999999865 1110 1224779999999999999999999 999999999999999999999
Q ss_pred eCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHH
Q 010825 403 CWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATN 481 (500)
Q Consensus 403 ~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~ 481 (500)
++|...||+.||.|+ +++|+|..+ . ..++++.|+++|+++|.|.+ |+++++++++.+++ .+| ...
T Consensus 325 v~P~~~DQ~~nA~rv-e~~G~G~~l-----~~~~l~~~~l~~av~~vL~~~~---~~~~~~~~~~~~~~---~~g--~~~ 390 (406)
T COG1819 325 VIPDGADQPLNAERV-EELGAGIAL-----PFEELTEERLRAAVNEVLADDS---YRRAAERLAEEFKE---EDG--PAK 390 (406)
T ss_pred EecCCcchhHHHHHH-HHcCCceec-----CcccCCHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhh---ccc--HHH
Confidence 999999999999999 799999999 7 58999999999999999998 99999999999998 355 566
Q ss_pred HHHHHHHHHhcC
Q 010825 482 LEKLVNQVLLSE 493 (500)
Q Consensus 482 ~~~l~~~~~~~~ 493 (500)
+.++|+++.+.+
T Consensus 391 ~a~~le~~~~~~ 402 (406)
T COG1819 391 AADLLEEFAREK 402 (406)
T ss_pred HHHHHHHHHhcc
Confidence 677777755443
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.92 E-value=1.2e-23 Score=207.45 Aligned_cols=321 Identities=17% Similarity=0.173 Sum_probs=195.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC-CCCCCCCCCCccccH
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD-GLPASSDESSTTQDM 90 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~-~~~~~~~~~~~~~~~ 90 (500)
+|++...++-||++|.++||++|.++||+|+|++.....+. +. ....++.+..++. ++... .....+
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~--~l------~~~~g~~~~~~~~~~l~~~----~~~~~~ 70 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEK--TI------IEKENIPYYSISSGKLRRY----FDLKNI 70 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCcccc--cc------CcccCCcEEEEeccCcCCC----chHHHH
Confidence 78899988999999999999999999999999997654321 10 1112567766652 12111 011111
Q ss_pred HHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhh
Q 010825 91 YSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFK 168 (500)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (500)
...+....... ....++++. +||+||...-.. .+..+|..+++|++......
T Consensus 71 ~~~~~~~~~~~---~~~~i~~~~---------kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~-------------- 124 (352)
T PRK12446 71 KDPFLVMKGVM---DAYVRIRKL---------KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM-------------- 124 (352)
T ss_pred HHHHHHHHHHH---HHHHHHHhc---------CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC--------------
Confidence 11111111111 112344444 999999987444 36788999999999863221
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHHH
Q 010825 169 EKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVLN 248 (500)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 248 (500)
.+++.+ +.+. +.++.+++ +++ .. .
T Consensus 125 ------------------------~~g~~n--------------------r~~~------~~a~~v~~-~f~---~~-~- 148 (352)
T PRK12446 125 ------------------------TPGLAN--------------------KIAL------RFASKIFV-TFE---EA-A- 148 (352)
T ss_pred ------------------------CccHHH--------------------HHHH------HhhCEEEE-Ecc---ch-h-
Confidence 111111 0111 11222222 221 11 0
Q ss_pred HHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHH-HHHHHHHHH
Q 010825 249 ALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQ-QLIEVAMGL 327 (500)
Q Consensus 249 ~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~-~~~~l~~al 327 (500)
....+.+++++|+.....- .. . ..++..+.+.-.+++++|+|+.||......+ .+..++..+
T Consensus 149 --~~~~~~k~~~tG~Pvr~~~-----------~~-~---~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l 211 (352)
T PRK12446 149 --KHLPKEKVIYTGSPVREEV-----------LK-G---NREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPEL 211 (352)
T ss_pred --hhCCCCCeEEECCcCCccc-----------cc-c---cchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhh
Confidence 1111236788887543210 00 0 0111222222233467999999999754433 333444444
Q ss_pred HhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeecc-c-hhHhhccCCcceeEeecCchhHHHHHhcCCceeeCC
Q 010825 328 VNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWC-P-QEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWP 405 (500)
Q Consensus 328 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~-p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P 405 (500)
.. +.+++|..+.+... + .... ..++.+..|+ + -.++|.++|+ +|||||.+|+.|++++|+|+|++|
T Consensus 212 ~~-~~~vv~~~G~~~~~-------~-~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP 279 (352)
T PRK12446 212 LL-KYQIVHLCGKGNLD-------D-SLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIP 279 (352)
T ss_pred cc-CcEEEEEeCCchHH-------H-HHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEc
Confidence 32 47888888755321 1 1111 1245666777 4 3579999998 999999999999999999999999
Q ss_pred cc-----cchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHH
Q 010825 406 FL-----GDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASK 463 (500)
Q Consensus 406 ~~-----~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 463 (500)
+. .||..||..+ ++.|+|..+ . ..++++.|.+++.++++|++ .+++++++
T Consensus 280 ~~~~~~~~~Q~~Na~~l-~~~g~~~~l-----~~~~~~~~~l~~~l~~ll~~~~--~~~~~~~~ 335 (352)
T PRK12446 280 LSKFASRGDQILNAESF-ERQGYASVL-----YEEDVTVNSLIKHVEELSHNNE--KYKTALKK 335 (352)
T ss_pred CCCCCCCchHHHHHHHH-HHCCCEEEc-----chhcCCHHHHHHHHHHHHcCHH--HHHHHHHH
Confidence 84 4899999999 689999999 6 78999999999999998864 25544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.92 E-value=4.3e-23 Score=202.62 Aligned_cols=307 Identities=17% Similarity=0.225 Sum_probs=190.4
Q ss_pred cEEEEEcCC-CcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCC-CCCCccc
Q 010825 11 VHAVCIPSP-SQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASS-DESSTTQ 88 (500)
Q Consensus 11 ~~il~~~~~-~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~-~~~~~~~ 88 (500)
|||++...+ +.||+...++|+++| |||+|+|++.....+.+.+ .+....+++-..... .......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 67 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-----------RFPVREIPGLGPIQENGRLDRWK 67 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-----------ccCEEEccCceEeccCCccchHH
Confidence 689988888 779999999999999 6999999998766555433 233444432111110 0111111
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhh
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFK 168 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (500)
........ .... ...++++++.+... +||+||+|. .+.+..+|+..|||++.+..........
T Consensus 68 ~~~~~~~~-~~~~-~~~~~~~~~~l~~~------~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~~-------- 130 (318)
T PF13528_consen 68 TVRNNIRW-LARL-ARRIRREIRWLREF------RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHPN-------- 130 (318)
T ss_pred HHHHHHHh-hHHH-HHHHHHHHHHHHhc------CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccccc--------
Confidence 11111111 1122 23344555555554 999999995 4557788999999999985543221000
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHh--ccccCcEEEEcChHHhhHHH
Q 010825 169 EKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATE--NASKASAIIIHTFDALEQQV 246 (500)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ns~~~le~~~ 246 (500)
. +.+. .......+..... ....++..+.-++. .+
T Consensus 131 ---~-------------------~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~- 166 (318)
T PF13528_consen 131 ---F-------------------WLPW------------------DQDFGRLIERYIDRYHFPPADRRLALSFY---PP- 166 (318)
T ss_pred ---C-------------------Ccch------------------hhhHHHHHHHhhhhccCCcccceecCCcc---cc-
Confidence 0 0000 0000011111111 12333333433322 11
Q ss_pred HHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHH
Q 010825 247 LNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMG 326 (500)
Q Consensus 247 ~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~a 326 (500)
..... +...+||+...... +.-. .+++.|+|++|..... .++++
T Consensus 167 ----~~~~~-~~~~~~p~~~~~~~-----------------------~~~~--~~~~~iLv~~gg~~~~------~~~~~ 210 (318)
T PF13528_consen 167 ----LPPFF-RVPFVGPIIRPEIR-----------------------ELPP--EDEPKILVYFGGGGPG------DLIEA 210 (318)
T ss_pred ----ccccc-cccccCchhccccc-----------------------ccCC--CCCCEEEEEeCCCcHH------HHHHH
Confidence 11122 46678887642210 0111 1346799999998532 56677
Q ss_pred HHhCC-CCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeecc--chhHhhccCCcceeEeecCchhHHHHHhcCCceee
Q 010825 327 LVNSN-HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWC--PQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMIC 403 (500)
Q Consensus 327 l~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~--pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~ 403 (500)
++..+ ..+++. +.... +...+|+.+.++. ...++|..+++ +|+|||.||++|++++|+|+|+
T Consensus 211 l~~~~~~~~~v~-g~~~~------------~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ 275 (318)
T PF13528_consen 211 LKALPDYQFIVF-GPNAA------------DPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALV 275 (318)
T ss_pred HHhCCCCeEEEE-cCCcc------------cccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEE
Confidence 77766 466555 43321 0116689998876 35679999998 9999999999999999999999
Q ss_pred CCc--ccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHH
Q 010825 404 WPF--LGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVREL 448 (500)
Q Consensus 404 ~P~--~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~v 448 (500)
+|. ..||..||+++ +++|+|+.+ + .+++++.|+++|+++
T Consensus 276 ip~~~~~EQ~~~a~~l-~~~G~~~~~-----~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 276 IPRPGQDEQEYNARKL-EELGLGIVL-----SQEDLTPERLAEFLERL 317 (318)
T ss_pred EeCCCCchHHHHHHHH-HHCCCeEEc-----ccccCCHHHHHHHHhcC
Confidence 999 78999999999 799999999 7 799999999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.88 E-value=5.6e-21 Score=187.26 Aligned_cols=124 Identities=19% Similarity=0.272 Sum_probs=91.5
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccc--hhHhhccCCc
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCP--QEEVLNHPAI 379 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p--q~~lL~~~~~ 379 (500)
++.|+|.+|+... ..+++++.+.+. +.+++..... ..+ ..++|+.+.+|.| ..++|+.+++
T Consensus 188 ~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~------~~~----~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 188 EDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV------AKN----SYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC------Ccc----ccCCCEEEEECChHHHHHHHHhCCE
Confidence 3567787888642 345667766653 2233222111 111 1256899999997 4578899998
Q ss_pred ceeEeecCchhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCCh
Q 010825 380 GGFFTHSGWNSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 380 ~~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~ 453 (500)
||||||.+|++|++++|+|++++|... ||..||+.+ ++.|+|+.+ + ..+ ++.+++.++++|+.
T Consensus 251 --vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l-~~~g~~~~l-----~~~~~---~~~~~~~~~~~~~~ 316 (321)
T TIGR00661 251 --VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKL-EDLGCGIAL-----EYKEL---RLLEAILDIRNMKR 316 (321)
T ss_pred --EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHH-HHCCCEEEc-----ChhhH---HHHHHHHhcccccc
Confidence 999999999999999999999999955 899999999 689999999 6 444 66777777777765
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.88 E-value=3.2e-20 Score=180.95 Aligned_cols=324 Identities=18% Similarity=0.227 Sum_probs=194.0
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCC-EEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcccc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGF-HITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQD 89 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (500)
++|++...++-||+.|-++|+++|.++|+ +|.++.+....+.... ...++.+..++.+-... .. ....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~~~~~--~~-~~~~ 69 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSGGLRR--KG-SLKL 69 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEecccccc--cC-cHHH
Confidence 47888999999999999999999999999 5888766554433211 12256776665332222 01 1111
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEeccchhHHHHHhhhhhh
Q 010825 90 MYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTISACSFMGFKQFRTF 167 (500)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (500)
+...+..+.. .-...+++++. +||+||.-.-++ .+..+|..+|||++..-.-
T Consensus 70 ~~~~~~~~~~---~~~a~~il~~~---------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn-------------- 123 (357)
T COG0707 70 LKAPFKLLKG---VLQARKILKKL---------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQN-------------- 123 (357)
T ss_pred HHHHHHHHHH---HHHHHHHHHHc---------CCCEEEecCCccccHHHHHHHhCCCCEEEEecC--------------
Confidence 2111222111 12234666665 999999976554 4677889999999986211
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHH
Q 010825 168 KEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (500)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~ 247 (500)
..++..+.... +.++.+. .+++.. .
T Consensus 124 ------------------------~~~G~ank~~~--------------------------~~a~~V~-~~f~~~--~-- 148 (357)
T COG0707 124 ------------------------AVPGLANKILS--------------------------KFAKKVA-SAFPKL--E-- 148 (357)
T ss_pred ------------------------CCcchhHHHhH--------------------------Hhhceee-eccccc--c--
Confidence 12332221100 1111111 111100 0
Q ss_pred HHHhhhCCCcceecCC-chhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccC-HHHHHHHHH
Q 010825 248 NALSFIFPLQLFTIGP-LQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMN-KQQLIEVAM 325 (500)
Q Consensus 248 ~~~~~~~p~~~~~vGp-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~l~~ 325 (500)
....+.+.+.+|- +...-... .. .-..+.. ...+++|+|+-||+.... .+.+..+..
T Consensus 149 ---~~~~~~~~~~tG~Pvr~~~~~~----------------~~-~~~~~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~ 207 (357)
T COG0707 149 ---AGVKPENVVVTGIPVRPEFEEL----------------PA-AEVRKDG-RLDKKTILVTGGSQGAKALNDLVPEALA 207 (357)
T ss_pred ---ccCCCCceEEecCcccHHhhcc----------------ch-hhhhhhc-cCCCcEEEEECCcchhHHHHHHHHHHHH
Confidence 1111224666663 32111000 00 0011111 114679999999996332 223333333
Q ss_pred HHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh-hcC-ceeeeccchh-HhhccCCcceeEeecCchhHHHHHhcCCcee
Q 010825 326 GLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA-KEK-GFIASWCPQE-EVLNHPAIGGFFTHSGWNSTIESLCAGVPMI 402 (500)
Q Consensus 326 al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~n-v~~~~~~pq~-~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 402 (500)
.+.+ +..+++..+.+.. +...... ..+ +.+..|.+++ ++|+.+|+ +||++|.+|+.|++++|+|+|
T Consensus 208 ~l~~-~~~v~~~~G~~~~--------~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~I 276 (357)
T COG0707 208 KLAN-RIQVIHQTGKNDL--------EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAI 276 (357)
T ss_pred Hhhh-CeEEEEEcCcchH--------HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEE
Confidence 3333 4567777665431 1121111 123 7778998875 69999999 999999999999999999999
Q ss_pred eCCcc----cchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q 010825 403 CWPFL----GDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEE 470 (500)
Q Consensus 403 ~~P~~----~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 470 (500)
.+|+- .||..||..+ ++.|.|..+ + ..+|.+.+.+.|.++++++ ++..+|++..++
T Consensus 277 liP~p~~~~~~Q~~NA~~l-~~~gaa~~i-----~~~~lt~~~l~~~i~~l~~~~------~~l~~m~~~a~~ 337 (357)
T COG0707 277 LVPYPPGADGHQEYNAKFL-EKAGAALVI-----RQSELTPEKLAELILRLLSNP------EKLKAMAENAKK 337 (357)
T ss_pred EeCCCCCccchHHHHHHHH-HhCCCEEEe-----ccccCCHHHHHHHHHHHhcCH------HHHHHHHHHHHh
Confidence 99982 3899999999 789999999 6 6899999999999999974 334444444444
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.82 E-value=6.2e-18 Score=168.75 Aligned_cols=341 Identities=16% Similarity=0.135 Sum_probs=194.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCC-CCCCCCCCCcccc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDG-LPASSDESSTTQD 89 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~ 89 (500)
|||+++..+..||....+.|++.|.++||+|++++.+..... .. ....++++..++.. .... .
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~--------~ 65 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEA-RL-------VPKAGIEFHFIPSGGLRRK--------G 65 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhh-hc-------cccCCCcEEEEeccCcCCC--------C
Confidence 689999988889999999999999999999999988552111 00 01125555555421 1111 1
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCc--chHHHHHHHhCCCeEEEeccchhHHHHHhhhhhh
Q 010825 90 MYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFL--PFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTF 167 (500)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (500)
....+...... ...+..+.+.+... +||+|++.... +.+..+++..++|+|......
T Consensus 66 ~~~~l~~~~~~--~~~~~~~~~~ik~~------~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------- 124 (357)
T PRK00726 66 SLANLKAPFKL--LKGVLQARKILKRF------KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------- 124 (357)
T ss_pred hHHHHHHHHHH--HHHHHHHHHHHHhc------CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC-------------
Confidence 11111111111 11222333333333 89999999732 245567788899998641100
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHH
Q 010825 168 KEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (500)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~ 247 (500)
+++ ...+.+. +.++.++..+... +
T Consensus 125 -------------------------~~~--------------------~~~r~~~------~~~d~ii~~~~~~-----~ 148 (357)
T PRK00726 125 -------------------------VPG--------------------LANKLLA------RFAKKVATAFPGA-----F 148 (357)
T ss_pred -------------------------Ccc--------------------HHHHHHH------HHhchheECchhh-----h
Confidence 000 0000000 1233333333211 1
Q ss_pred HHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHHH
Q 010825 248 NALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGL 327 (500)
Q Consensus 248 ~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al 327 (500)
. . ..+.++.++|........ . ....-.++ ...+..++|++..|+... ......+.+++
T Consensus 149 ~--~-~~~~~i~vi~n~v~~~~~---------~-------~~~~~~~~-~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~ 206 (357)
T PRK00726 149 P--E-FFKPKAVVTGNPVREEIL---------A-------LAAPPARL-AGREGKPTLLVVGGSQGA--RVLNEAVPEAL 206 (357)
T ss_pred h--c-cCCCCEEEECCCCChHhh---------c-------ccchhhhc-cCCCCCeEEEEECCcHhH--HHHHHHHHHHH
Confidence 1 1 223367778765432110 0 00000111 112234567665566421 11222333555
Q ss_pred HhCCC--CEEEEEcCCCCCCCCCCCchHHHHH--hhcCceeeeccc-hhHhhccCCcceeEeecCchhHHHHHhcCCcee
Q 010825 328 VNSNH--PFLWIIRPDLVTGETADLPAEFEVK--AKEKGFIASWCP-QEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMI 402 (500)
Q Consensus 328 ~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p-q~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v 402 (500)
.+... .+++.++.+.. +...+. ..-++.+.+|+. ..++|+.+++ +|+|+|.++++||+++|+|+|
T Consensus 207 ~~~~~~~~~~~~~G~g~~--------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv 276 (357)
T PRK00726 207 ALLPEALQVIHQTGKGDL--------EEVRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAI 276 (357)
T ss_pred HHhhhCcEEEEEcCCCcH--------HHHHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEE
Confidence 54433 34555554431 222211 122377889985 4689999999 999999999999999999999
Q ss_pred eCCc----ccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCC
Q 010825 403 CWPF----LGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGS 477 (500)
Q Consensus 403 ~~P~----~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~ 477 (500)
++|. ..+|..|+..+ .+.|.|..+ . ..+++++|.++|.++++|++ .+++..+-++... +.++
T Consensus 277 ~~~~~~~~~~~~~~~~~~i-~~~~~g~~~-----~~~~~~~~~l~~~i~~ll~~~~---~~~~~~~~~~~~~----~~~~ 343 (357)
T PRK00726 277 LVPLPHAADDHQTANARAL-VDAGAALLI-----PQSDLTPEKLAEKLLELLSDPE---RLEAMAEAARALG----KPDA 343 (357)
T ss_pred EecCCCCCcCcHHHHHHHH-HHCCCEEEE-----EcccCCHHHHHHHHHHHHcCHH---HHHHHHHHHHhcC----CcCH
Confidence 9997 36899999999 579999999 6 56789999999999999987 6655555444433 2344
Q ss_pred hHHHHHHHHHHH
Q 010825 478 SATNLEKLVNQV 489 (500)
Q Consensus 478 ~~~~~~~l~~~~ 489 (500)
..+.++.+++.+
T Consensus 344 ~~~~~~~~~~~~ 355 (357)
T PRK00726 344 AERLADLIEELA 355 (357)
T ss_pred HHHHHHHHHHHh
Confidence 445555554443
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.77 E-value=2.7e-16 Score=156.50 Aligned_cols=313 Identities=16% Similarity=0.148 Sum_probs=181.9
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCC-CCCCCCCCCccccH
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDG-LPASSDESSTTQDM 90 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~-~~~~~~~~~~~~~~ 90 (500)
+|++...+..||....+.|++.|.++||+|++++....... .. ....++++..++-. .... .....+
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~----~~~~~~ 68 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEA--RL------VPKAGIPLHTIPVGGLRRK----GSLKKL 68 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchh--hc------ccccCCceEEEEecCcCCC----ChHHHH
Confidence 58888888889999999999999999999999987542111 00 01124555555421 1111 011111
Q ss_pred HHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCc--chHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhh
Q 010825 91 YSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFL--PFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFK 168 (500)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 168 (500)
...+.. ... ...+.+++++. +||+|++.... ..+..+|...|+|++......
T Consensus 69 ~~~~~~-~~~--~~~~~~~i~~~---------~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~-------------- 122 (350)
T cd03785 69 KAPFKL-LKG--VLQARKILKKF---------KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNA-------------- 122 (350)
T ss_pred HHHHHH-HHH--HHHHHHHHHhc---------CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCC--------------
Confidence 111111 111 12233444443 99999987633 346677889999998631100
Q ss_pred hcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHHH
Q 010825 169 EKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVLN 248 (500)
Q Consensus 169 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~ 248 (500)
+++. ..+. ..+.++.+++.+....+.
T Consensus 123 ------------------------~~~~--------------------~~~~------~~~~~~~vi~~s~~~~~~---- 148 (350)
T cd03785 123 ------------------------VPGL--------------------ANRL------LARFADRVALSFPETAKY---- 148 (350)
T ss_pred ------------------------CccH--------------------HHHH------HHHhhCEEEEcchhhhhc----
Confidence 0000 0000 012345555555222111
Q ss_pred HHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccC-HHHHHHHHHHH
Q 010825 249 ALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMN-KQQLIEVAMGL 327 (500)
Q Consensus 249 ~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~-~~~~~~l~~al 327 (500)
..+.++.++|......... .... ...+...+++++|++..|+..... .+.+...+..+
T Consensus 149 ----~~~~~~~~i~n~v~~~~~~----------------~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l 207 (350)
T cd03785 149 ----FPKDKAVVTGNPVREEILA----------------LDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAEL 207 (350)
T ss_pred ----CCCCcEEEECCCCchHHhh----------------hhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHh
Confidence 2233677777544221100 0001 112222223456666666664221 12222333334
Q ss_pred HhCCCCEEEEEcCCCCCCCCCCCchHHHHHh---hcCceeeecc-chhHhhccCCcceeEeecCchhHHHHHhcCCceee
Q 010825 328 VNSNHPFLWIIRPDLVTGETADLPAEFEVKA---KEKGFIASWC-PQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMIC 403 (500)
Q Consensus 328 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~nv~~~~~~-pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~ 403 (500)
...+..+++.++.+. .+.+.+.. ..|+.+.+|+ +..++|+.+++ +|+++|.+|+.||+++|+|+|+
T Consensus 208 ~~~~~~~~~i~G~g~--------~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~ 277 (350)
T cd03785 208 LRKRLQVIHQTGKGD--------LEEVKKAYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAIL 277 (350)
T ss_pred hccCeEEEEEcCCcc--------HHHHHHHHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEE
Confidence 333344556665441 12222222 3589999998 45679999999 9999999999999999999999
Q ss_pred CCc----ccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCCh
Q 010825 404 WPF----LGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 404 ~P~----~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~ 453 (500)
.|. ..+|..++..+ .+.|.|..+ + ...+++++.++|.++++|+.
T Consensus 278 ~~~~~~~~~~~~~~~~~l-~~~g~g~~v-----~~~~~~~~~l~~~i~~ll~~~~ 326 (350)
T cd03785 278 IPLPYAADDHQTANARAL-VKAGAAVLI-----PQEELTPERLAAALLELLSDPE 326 (350)
T ss_pred eecCCCCCCcHHHhHHHH-HhCCCEEEE-----ecCCCCHHHHHHHHHHHhcCHH
Confidence 986 46788999999 578999999 6 34799999999999998765
No 34
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=3.4e-14 Score=141.26 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=67.4
Q ss_pred chhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcc---cchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHH
Q 010825 369 PQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFL---GDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQ 444 (500)
Q Consensus 369 pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~ 444 (500)
+-.++|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+ +..|.|..+ . ...++++|.++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i-~~~~~G~~~-----~~~~~~~~~l~~~ 314 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFL-EDLGAGLVI-----RQKELLPEKLLEA 314 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHH-HHCCCEEEE-----ecccCCHHHHHHH
Confidence 45789999999 99999988999999999999999873 4678888888 578999998 6 56789999999
Q ss_pred HHHHhCCCh
Q 010825 445 VRELMGGEK 453 (500)
Q Consensus 445 i~~vl~~~~ 453 (500)
|.++++|++
T Consensus 315 i~~ll~~~~ 323 (348)
T TIGR01133 315 LLKLLLDPA 323 (348)
T ss_pred HHHHHcCHH
Confidence 999998876
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.67 E-value=6.7e-15 Score=147.49 Aligned_cols=167 Identities=10% Similarity=-0.052 Sum_probs=108.9
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHH---HHhhcCceeeecc-chh
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFIASWC-PQE 371 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~-pq~ 371 (500)
++++|.+.-||....-......+++++..+ +.++++...... ..+.+. +....+..+.-+. +..
T Consensus 190 ~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~ 262 (385)
T TIGR00215 190 NGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK-------RRLQFEQIKAEYGPDLQLHLIDGDAR 262 (385)
T ss_pred CCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch-------hHHHHHHHHHHhCCCCcEEEECchHH
Confidence 457888888887542233444555554432 234555443221 111111 1111122222221 335
Q ss_pred HhhccCCcceeEeecCchhHHHHHhcCCceeeC----Cccc---------chhhhHHHhhhhhcceeEeeeCCCC-CCcC
Q 010825 372 EVLNHPAIGGFFTHSGWNSTIESLCAGVPMICW----PFLG---------DQPTNCRYTCNEWGVGLEIINGGDD-NRVS 437 (500)
Q Consensus 372 ~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~ 437 (500)
.+|..+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..+ ...++..++ - ...|
T Consensus 263 ~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil-~~~~~~pel-----~q~~~~ 333 (385)
T TIGR00215 263 KAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL-ANRLLVPEL-----LQEECT 333 (385)
T ss_pred HHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh-cCCccchhh-----cCCCCC
Confidence 69999999 9999999988 999999999999 7731 378899999 578999998 5 7899
Q ss_pred HHHHHHHHHHHhCCC----h-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010825 438 RNEVEKQVRELMGGE----K-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVN 487 (500)
Q Consensus 438 ~~~l~~~i~~vl~~~----~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 487 (500)
++.|.+.+.++++|+ + .+++++..+++++.+. ++|.+.+..+.+++
T Consensus 334 ~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 334 PHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVLE 384 (385)
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHhh
Confidence 999999999999998 5 2456666666666664 45666666655543
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=2.4e-14 Score=144.19 Aligned_cols=172 Identities=15% Similarity=0.207 Sum_probs=114.4
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHH---HHhhcCceeeeccchh-Hhhc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFIASWCPQE-EVLN 375 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~pq~-~lL~ 375 (500)
++++|++..|+.... ..+..+++++... +.+++++.+.+.. +-+.+. +..+.|+.+.+|+++. ++|.
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------LKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------HHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 346777777877532 2244566666543 4566666553310 111221 1223589999999874 7999
Q ss_pred cCCcceeEeecCchhHHHHHhcCCceeeC-CcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChh
Q 010825 376 HPAIGGFFTHSGWNSTIESLCAGVPMICW-PFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKG 454 (500)
Q Consensus 376 ~~~~~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~ 454 (500)
.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.+++.++|.++++|++
T Consensus 273 ~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~-~~~G~~~~~--------~~~~~l~~~i~~ll~~~~- 340 (380)
T PRK13609 273 VTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYF-ERKGAAVVI--------RDDEEVFAKTEALLQDDM- 340 (380)
T ss_pred hccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHH-HhCCcEEEE--------CCHHHHHHHHHHHHCCHH-
Confidence 9998 99999988999999999999985 6677778899888 678999877 467999999999999875
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCCC
Q 010825 455 KQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLSEGLIPS 498 (500)
Q Consensus 455 ~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~ 498 (500)
.+++ +++..++. ....+.+..++.+++.+.....+++|
T Consensus 341 --~~~~---m~~~~~~~-~~~~s~~~i~~~i~~~~~~~~~~~~~ 378 (380)
T PRK13609 341 --KLLQ---MKEAMKSL-YLPEPADHIVDDILAENHVEPNLAQS 378 (380)
T ss_pred --HHHH---HHHHHHHh-CCCchHHHHHHHHHHhhhhhhhhHhh
Confidence 3333 22222221 12345566666666666555544443
No 37
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.64 E-value=5.8e-14 Score=134.23 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=76.5
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHHH--hhcCceeeeccchh-HhhccC
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFIASWCPQE-EVLNHP 377 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq~-~lL~~~ 377 (500)
+.|+++||..-. .+....+++++... +.++.++++.... ..+.+.+. ...|+.+..++++. ++|+.+
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~------~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~a 242 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP------NLDELKKFAKEYPNIILFIDVENMAELMNEA 242 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc------CHHHHHHHHHhCCCEEEEeCHHHHHHHHHHC
Confidence 569999996642 22445566666654 3467777765421 12223221 13588899999985 799999
Q ss_pred CcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHH
Q 010825 378 AIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRY 416 (500)
Q Consensus 378 ~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~ 416 (500)
|+ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 243 Dl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 243 DL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99 999999 9999999999999999999999999875
No 38
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.52 E-value=5.8e-12 Score=126.95 Aligned_cols=134 Identities=21% Similarity=0.276 Sum_probs=96.3
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCchHHHHHh--hcCceeeeccchh-Hhhc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFIASWCPQE-EVLN 375 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~pq~-~lL~ 375 (500)
++++|+++.|+... ...+..+++++.+ .+.+++++.+.+.. +-+.+.+.. ..++.+.+|+++. ++|+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~------l~~~l~~~~~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE------LKRSLTAKFKSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH------HHHHHHHHhccCCCeEEEeccchHHHHHH
Confidence 35688888898752 1234444444322 23456666553310 111222211 3478889999764 6999
Q ss_pred cCCcceeEeecCchhHHHHHhcCCceeeC-CcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 376 HPAIGGFFTHSGWNSTIESLCAGVPMICW-PFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 376 ~~~~~~~I~HgG~~s~~eal~~GvP~v~~-P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+ ++.|+|+.. -+.+++.++|.++++|++
T Consensus 273 ~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~-~~~G~g~~~--------~~~~~l~~~i~~ll~~~~ 340 (391)
T PRK13608 273 SSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYF-EEKGFGKIA--------DTPEEAIKIVASLTNGNE 340 (391)
T ss_pred hhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHH-HhCCcEEEe--------CCHHHHHHHHHHHhcCHH
Confidence 9999 99998888999999999999998 7666677899999 689999988 378999999999998865
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.51 E-value=7.6e-12 Score=116.74 Aligned_cols=137 Identities=15% Similarity=0.176 Sum_probs=102.9
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHh-CCCCEEEEEcCCCCCCCCCCCchHHHH----Hhh--cCceeeeccch-hH
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVN-SNHPFLWIIRPDLVTGETADLPAEFEV----KAK--EKGFIASWCPQ-EE 372 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~--~nv~~~~~~pq-~~ 372 (500)
++..|+||-|--. ...+++...+.|... .+.+-.|.+-.+.. +|+.-.. ..+ +++.+..|-.+ ..
T Consensus 218 E~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtGP~------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ 290 (400)
T COG4671 218 EGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTGPF------MPEAQRQKLLASAPKRPHISIFEFRNDFES 290 (400)
T ss_pred ccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeCCC------CCHHHHHHHHHhcccCCCeEEEEhhhhHHH
Confidence 3346888888753 456677776666544 34332344332222 6653222 234 67888999876 56
Q ss_pred hhccCCcceeEeecCchhHHHHHhcCCceeeCCcc---cchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHH
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFL---GDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVREL 448 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~---~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~v 448 (500)
+|..++. +|+-||.||++|-|.+|+|.+++|.. -+|-.-|.|+ +++|+.-.+ - ..++++.++++|...
T Consensus 291 ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl-~~LGL~dvL-----~pe~lt~~~La~al~~~ 362 (400)
T COG4671 291 LLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRL-EELGLVDVL-----LPENLTPQNLADALKAA 362 (400)
T ss_pred HHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHH-HhcCcceee-----CcccCChHHHHHHHHhc
Confidence 9999888 99999999999999999999999995 3899999999 789999999 6 789999999999988
Q ss_pred hCCC
Q 010825 449 MGGE 452 (500)
Q Consensus 449 l~~~ 452 (500)
+.-+
T Consensus 363 l~~P 366 (400)
T COG4671 363 LARP 366 (400)
T ss_pred ccCC
Confidence 8733
No 40
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.50 E-value=4.1e-12 Score=127.94 Aligned_cols=104 Identities=10% Similarity=0.065 Sum_probs=66.9
Q ss_pred hHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccc--------hhhh-----HHHhhhhhcceeEeeeCCCC-CCc
Q 010825 371 EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGD--------QPTN-----CRYTCNEWGVGLEIINGGDD-NRV 436 (500)
Q Consensus 371 ~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~D--------Q~~n-----a~~~~~~~G~g~~~~~~~~~-~~~ 436 (500)
..+++.+|+ +|+.+|.+++ |++++|+|+|+.|...- |..| +..+ ...+++..+ . ...
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~-----~~~~~ 326 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLL-AGRELVPEL-----LQEEA 326 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHh-cCCCcchhh-----cCCCC
Confidence 579999999 9999999888 99999999998854321 2111 1222 223333334 3 578
Q ss_pred CHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010825 437 SRNEVEKQVRELMGGEKG-KQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQ 488 (500)
Q Consensus 437 ~~~~l~~~i~~vl~~~~~-~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 488 (500)
+++.|.++|.++++|++. ++|+++++++.+.+ . .|...+.++.+++.
T Consensus 327 ~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~----~~a~~~~~~~i~~~ 374 (380)
T PRK00025 327 TPEKLARALLPLLADGARRQALLEGFTELHQQL-R----CGADERAAQAVLEL 374 (380)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-C----CCHHHHHHHHHHHH
Confidence 899999999999999872 34445554454444 2 24444444444443
No 41
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.47 E-value=2.8e-11 Score=121.71 Aligned_cols=113 Identities=19% Similarity=0.193 Sum_probs=84.1
Q ss_pred cCceeeeccch-hHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchh-hhHHHhhhhhcceeEeeeCCCCCCcC
Q 010825 360 EKGFIASWCPQ-EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQP-TNCRYTCNEWGVGLEIINGGDDNRVS 437 (500)
Q Consensus 360 ~nv~~~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~-~na~~~~~~~G~g~~~~~~~~~~~~~ 437 (500)
.++.+.+|+++ .++|+.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+ .+.|.|+.+ -+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i-~~~g~g~~~--------~~ 333 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYV-VDNGFGAFS--------ES 333 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHH-HhCCceeec--------CC
Confidence 46788999986 469999999 999999999999999999999998877776 688888 578999876 58
Q ss_pred HHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010825 438 RNEVEKQVRELMGG-EKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 438 ~~~l~~~i~~vl~~-~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
+++|.++|.+++.| ++ .+ ++|++..++.. ...+....++.+++.+.
T Consensus 334 ~~~la~~i~~ll~~~~~---~~---~~m~~~~~~~~-~~~a~~~i~~~l~~~~~ 380 (382)
T PLN02605 334 PKEIARIVAEWFGDKSD---EL---EAMSENALKLA-RPEAVFDIVHDLHELVR 380 (382)
T ss_pred HHHHHHHHHHHHcCCHH---HH---HHHHHHHHHhc-CCchHHHHHHHHHHHhh
Confidence 89999999999987 43 33 33333333321 23444555555555443
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.45 E-value=3.1e-15 Score=132.16 Aligned_cols=137 Identities=17% Similarity=0.228 Sum_probs=95.8
Q ss_pred eEEEeeccccccCH-HHHHHHHHHHHh--CCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccc-hhHhhccCCc
Q 010825 304 VIYVNFGSIIIMNK-QQLIEVAMGLVN--SNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCP-QEEVLNHPAI 379 (500)
Q Consensus 304 vV~vs~Gs~~~~~~-~~~~~l~~al~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-q~~lL~~~~~ 379 (500)
+|+|+.||.....- +.+..+...+.. ...++++..+....... ... + .....++.+.+|++ ..++|..+|+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~---~~~-~-~~~~~~v~~~~~~~~m~~~m~~aDl 75 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEEL---KIK-V-ENFNPNVKVFGFVDNMAELMAAADL 75 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHH---CCC-H-CCTTCCCEEECSSSSHHHHHHHHSE
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHH---HHH-H-hccCCcEEEEechhhHHHHHHHcCE
Confidence 48999998853211 112222222222 24678888876532110 000 1 01125789999999 6789999999
Q ss_pred ceeEeecCchhHHHHHhcCCceeeCCccc----chhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhCCCh
Q 010825 380 GGFFTHSGWNSTIESLCAGVPMICWPFLG----DQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 380 ~~~I~HgG~~s~~eal~~GvP~v~~P~~~----DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~~~~ 453 (500)
+|||||.||++|++++|+|+|++|... +|..||..+ ++.|+|..+ . ...+.+.|.++|.+++.++.
T Consensus 76 --vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~-~~~g~~~~~-----~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 76 --VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKEL-AKKGAAIML-----DESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp --EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHH-HHCCCCCCS-----ECCC-SCCCHHHHHHCHCCCHH
T ss_pred --EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHH-HHcCCcccc-----CcccCCHHHHHHHHHHHHcCcH
Confidence 999999999999999999999999988 999999999 689999999 6 56779999999999998875
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.38 E-value=1e-10 Score=117.38 Aligned_cols=134 Identities=17% Similarity=0.123 Sum_probs=90.4
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhC----CCCEEEEEcCCCCCCCCCCCchHHHHHhh------------------
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNS----NHPFLWIIRPDLVTGETADLPAEFEVKAK------------------ 359 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------------------ 359 (500)
+++|.+--||....-.+.+..++++++.+ +..|++.+.++.. .+.+.+...
T Consensus 205 ~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~-------~~~~~~~l~~~g~~~~~~~~~~~~~~~ 277 (396)
T TIGR03492 205 RFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSLS-------LEKLQAILEDLGWQLEGSSEDQTSLFQ 277 (396)
T ss_pred CCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCCC-------HHHHHHHHHhcCceecCCccccchhhc
Confidence 46899999998543334445555555543 4567777633221 111211111
Q ss_pred -cCceeeeccch-hHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhh----cceeEeeeCCCC
Q 010825 360 -EKGFIASWCPQ-EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEW----GVGLEIINGGDD 433 (500)
Q Consensus 360 -~nv~~~~~~pq-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~----G~g~~~~~~~~~ 433 (500)
+++.+..+..+ .++|+.+++ +|+-+|..| .|++..|+|+|++|.-..|. |+..+ ++. |.++.+ .
T Consensus 278 ~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~-~~~~~l~g~~~~l-----~ 347 (396)
T TIGR03492 278 KGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA-EAQSRLLGGSVFL-----A 347 (396)
T ss_pred cCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH-HhhHhhcCCEEec-----C
Confidence 12444455443 579999999 999999766 99999999999999876776 88777 553 777777 3
Q ss_pred CCcCHHHHHHHHHHHhCCCh
Q 010825 434 NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~ 453 (500)
..+.+.|.+++.++++|++
T Consensus 348 -~~~~~~l~~~l~~ll~d~~ 366 (396)
T TIGR03492 348 -SKNPEQAAQVVRQLLADPE 366 (396)
T ss_pred -CCCHHHHHHHHHHHHcCHH
Confidence 2445999999999999875
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=3.5e-13 Score=115.19 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=80.7
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHH
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYS 92 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 92 (500)
|+|++.|+.||++|+++||++|.+|||+|++++++.+.+.+++. +++|..++.. ............+..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~~~----------Gl~~~~~~~~-~~~~~~~~~~~~~~~ 69 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVEAA----------GLEFVPIPGD-SRLPRSLEPLANLRR 69 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHHHT----------T-EEEESSSC-GGGGHHHHHHHHHHC
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccccc----------CceEEEecCC-cCcCcccchhhhhhh
Confidence 78999999999999999999999999999999999999999776 8999998744 111000000011111
Q ss_pred HHHH--HHHhccchHHHHHHHHhh-cCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccchh
Q 010825 93 LCES--IMNNVMLHPFLDLLAKLN-DSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTISAC 156 (500)
Q Consensus 93 ~~~~--~~~~~~~~~l~~ll~~l~-~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 156 (500)
.... ..... ...+.+...+.. .. ......|+++.+.....+..+|+++|||++.....+..
T Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 70 LARLIRGLEEA-MRILARFRPDLVVAA--GGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHCCCCHC--TTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHhhhhhHH-HHHhhccCcchhhhc--cCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111 11111 111111111110 11 01125788888887778999999999999998766543
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.31 E-value=6.8e-09 Score=103.17 Aligned_cols=157 Identities=15% Similarity=0.199 Sum_probs=95.8
Q ss_pred ceEEEeecccc-ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhH---hhccC
Q 010825 303 SVIYVNFGSII-IMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEE---VLNHP 377 (500)
Q Consensus 303 ~vV~vs~Gs~~-~~~~~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~---lL~~~ 377 (500)
+.+++..|+.. .-..+.+..++..+... +.++++. +.+.. .+.+. ....|+.+.+|+++.+ +|..+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~~-------~~~~~-~~~~~v~~~g~~~~~~~~~~~~~~ 267 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGPA-------RARLE-ARYPNVHFLGFLDGEELAAAYASA 267 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCch-------HHHHh-ccCCcEEEEeccCHHHHHHHHHhC
Confidence 45677778764 22334444444444332 3344433 32211 11111 2356899999998754 89999
Q ss_pred CcceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 378 AIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 378 ~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
++ +|+.+. .+++.||+++|+|+|+.+..+ +...+ +..+.|... + .-+.+++.++|.+++.|++
T Consensus 268 d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i-~~~~~g~~~-----~-~~~~~~l~~~i~~l~~~~~ 334 (364)
T cd03814 268 DV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIV-TDGENGLLV-----E-PGDAEAFAAALAALLADPE 334 (364)
T ss_pred CE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhh-cCCcceEEc-----C-CCCHHHHHHHHHHHHcCHH
Confidence 98 886654 478999999999999877543 45556 556888877 4 3577889999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHH
Q 010825 454 GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQ 488 (500)
Q Consensus 454 ~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~ 488 (500)
.+++..+-+....+ .-+.+...+++++.
T Consensus 335 ---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 362 (364)
T cd03814 335 ---LRRRMAARARAEAE----RRSWEAFLDNLLEA 362 (364)
T ss_pred ---HHHHHHHHHHHHHh----hcCHHHHHHHHHHh
Confidence 33333322222222 24445566666554
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.26 E-value=1.6e-08 Score=104.50 Aligned_cols=137 Identities=11% Similarity=0.095 Sum_probs=84.8
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHh-hcCceeeeccchh---HhhccCC
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKA-KEKGFIASWCPQE---EVLNHPA 378 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~nv~~~~~~pq~---~lL~~~~ 378 (500)
.+++..|+.. ....+..++++++.. +.++++ ++.+. ..+.+.+.. ..++.+.+++|+. .+|..+|
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G~-------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aD 333 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDGP-------YREELEKMFAGTPTVFTGMLQGDELSQAYASGD 333 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCCh-------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHCC
Confidence 4556668764 223355567777665 345443 34322 112222211 2478889999864 4888999
Q ss_pred cceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhh---hcceeEeeeCCCCCCcCHHHHHHHHHHHhCC
Q 010825 379 IGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNE---WGVGLEIINGGDDNRVSRNEVEKQVRELMGG 451 (500)
Q Consensus 379 ~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~---~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~ 451 (500)
+ ||.-.. -.++.||+++|+|+|+.... .....+ +. -+.|..+ + .-+.+++.++|.++++|
T Consensus 334 v--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv-~~~~~~~~G~lv-----~-~~d~~~la~~i~~ll~~ 400 (465)
T PLN02871 334 V--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDII-PPDQEGKTGFLY-----T-PGDVDDCVEKLETLLAD 400 (465)
T ss_pred E--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhh-hcCCCCCceEEe-----C-CCCHHHHHHHHHHHHhC
Confidence 8 775432 34789999999999986542 222333 44 5678877 4 24789999999999988
Q ss_pred Ch-hHHHHHHHHH
Q 010825 452 EK-GKQMRNKASK 463 (500)
Q Consensus 452 ~~-~~~~~~~a~~ 463 (500)
++ .+++.+++++
T Consensus 401 ~~~~~~~~~~a~~ 413 (465)
T PLN02871 401 PELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 75 1334444443
No 47
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.19 E-value=1.1e-09 Score=99.39 Aligned_cols=146 Identities=13% Similarity=0.135 Sum_probs=108.4
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh--hcCceeeeccc-hhHhhccCCcc
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFIASWCP-QEEVLNHPAIG 380 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p-q~~lL~~~~~~ 380 (500)
-|+||+|-.- +.+..-+++..+.+.++.+-+++++.. . -.....++. .+|+.+.-... ...+|+.++.
T Consensus 160 ~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~~--p----~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~- 230 (318)
T COG3980 160 DILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSSN--P----TLKNLRKRAEKYPNINLYIDTNDMAELMKEADL- 230 (318)
T ss_pred eEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCCC--c----chhHHHHHHhhCCCeeeEecchhHHHHHHhcch-
Confidence 4999998662 445666778888877766666665321 1 122333333 24666655555 3469999998
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHH
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNK 460 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~ 460 (500)
.|+.||. |++|++..|+|.+++|+.-.|---|... +.+|+-..+ +-+++.+.....+.++..|.. .|++
T Consensus 231 -aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f-~~lg~~~~l-----~~~l~~~~~~~~~~~i~~d~~---~rk~ 299 (318)
T COG3980 231 -AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEF-EALGIIKQL-----GYHLKDLAKDYEILQIQKDYA---RRKN 299 (318)
T ss_pred -heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHH-HhcCchhhc-----cCCCchHHHHHHHHHhhhCHH---Hhhh
Confidence 9988885 8999999999999999999999999999 788998888 756999999999999999986 6666
Q ss_pred HHHHHHHHH
Q 010825 461 ASKWKRFAE 469 (500)
Q Consensus 461 a~~l~~~~~ 469 (500)
...-.+.+.
T Consensus 300 l~~~~~~i~ 308 (318)
T COG3980 300 LSFGSKLIG 308 (318)
T ss_pred hhhccceee
Confidence 655555444
No 48
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.18 E-value=8.3e-08 Score=95.03 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=61.3
Q ss_pred hcCceeeeccchh---HhhccCCcceeEe----ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFT----HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
..++.+.+|+++. .++..+++ +|+ ..|+ .++.||+++|+|+|+.+. ......+ +..+.|..+
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i-~~~~~g~~~--- 311 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELV-RDGVNGLLF--- 311 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHh-cCCCcEEEE---
Confidence 4688899999764 46899998 663 2344 479999999999998654 4455566 444578777
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCh
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+. -+.+++.++|.++++|+.
T Consensus 312 --~~-~d~~~l~~~i~~l~~~~~ 331 (359)
T cd03823 312 --PP-GDAEDLAAALERLIDDPD 331 (359)
T ss_pred --CC-CCHHHHHHHHHHHHhChH
Confidence 42 458999999999999775
No 49
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.14 E-value=4.9e-08 Score=97.59 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=81.2
Q ss_pred CceEEEeecccc-ccCHHHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHH----HhhcCceeeeccchh---H
Q 010825 302 NSVIYVNFGSII-IMNKQQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEV----KAKEKGFIASWCPQE---E 372 (500)
Q Consensus 302 ~~vV~vs~Gs~~-~~~~~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~nv~~~~~~pq~---~ 372 (500)
++.+++..|+.. ..+.+.+...+..+... +.+++ .++.+. ..+.+.+ ....|+.+.+++|+. +
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~-i~G~~~-------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 290 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFL-IVGDGP-------EKEELKELAKALGLDNVTFLGRVPKEELPE 290 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEE-EeCCcc-------cHHHHHHHHHHcCCCcEEEeCCCChHHHHH
Confidence 456777788874 23334444444444333 33443 334322 1122221 123688889999865 4
Q ss_pred hhccCCcceeEeecC---------chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHH
Q 010825 373 VLNHPAIGGFFTHSG---------WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEK 443 (500)
Q Consensus 373 lL~~~~~~~~I~HgG---------~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~ 443 (500)
++..+++ +|.... -+++.||+++|+|+|+.+..+.+.. + ...+.|..+ +. -+.+++.+
T Consensus 291 ~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~-~~~~~g~~~-----~~-~~~~~l~~ 357 (394)
T cd03794 291 LLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----V-EEAGAGLVV-----PP-GDPEALAA 357 (394)
T ss_pred HHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----h-ccCCcceEe-----CC-CCHHHHHH
Confidence 7889998 664332 2347999999999999877654432 3 333667776 42 37899999
Q ss_pred HHHHHhCCCh
Q 010825 444 QVRELMGGEK 453 (500)
Q Consensus 444 ~i~~vl~~~~ 453 (500)
+|.++++|++
T Consensus 358 ~i~~~~~~~~ 367 (394)
T cd03794 358 AILELLDDPE 367 (394)
T ss_pred HHHHHHhChH
Confidence 9999998776
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.14 E-value=3.1e-07 Score=93.47 Aligned_cols=91 Identities=19% Similarity=0.293 Sum_probs=62.0
Q ss_pred cCcee-eeccchh---HhhccCCcceeEe-e---cC---chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEee
Q 010825 360 EKGFI-ASWCPQE---EVLNHPAIGGFFT-H---SG---WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEII 428 (500)
Q Consensus 360 ~nv~~-~~~~pq~---~lL~~~~~~~~I~-H---gG---~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 428 (500)
+|+.+ .+|+|.. ++|..+++ +|. + -| -+++.||+++|+|+|+... ......+ ++-+.|..+
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~----~~~~eiv-~~~~~G~lv- 365 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCALDF----KCIDELV-KHGENGLVF- 365 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHHHHHHHcCCCEEEeCC----CCHHHHh-cCCCCEEEE-
Confidence 35554 4688854 46889998 653 1 12 3479999999999998543 3444455 666789888
Q ss_pred eCCCCCCcCHHHHHHHHHHHhCC---Ch-hHHHHHHHHHHH
Q 010825 429 NGGDDNRVSRNEVEKQVRELMGG---EK-GKQMRNKASKWK 465 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~~---~~-~~~~~~~a~~l~ 465 (500)
+ +.+++.++|.++++| ++ .++|++++++..
T Consensus 366 ----~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 366 ----G---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred ----C---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 4 789999999999998 43 234444444433
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.12 E-value=3.1e-07 Score=90.55 Aligned_cols=136 Identities=12% Similarity=0.087 Sum_probs=81.4
Q ss_pred CceEEEeecccc-ccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHHH--hhcCceeeeccch-hHhhcc
Q 010825 302 NSVIYVNFGSII-IMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVK--AKEKGFIASWCPQ-EEVLNH 376 (500)
Q Consensus 302 ~~vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~pq-~~lL~~ 376 (500)
++.+++..|+.. .-..+.+...+..+.+.+.++ +++++....... ........ ...++.+.++..+ ..++..
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~---~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENP---AAILEIEKLGLEGRVEFLGFRDDVPELLAA 263 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchh---hHHHHHHhcCCcceEEEeeccccHHHHHHh
Confidence 456888888874 233444444444444323333 233333221110 00000111 2357777887554 469999
Q ss_pred CCcceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 377 PAIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 377 ~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
+++ +|.-+. -+++.||+++|+|+|+.+.. .....+ ++.+.|..+ + .-+.+++.++|.+++.|+
T Consensus 264 adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i-~~~~~g~~~-----~-~~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 264 ADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAV-IDGVNGFLV-----P-PGDAEALADAIERLIEDP 330 (359)
T ss_pred ccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----Cchhhh-hcCcceEEE-----C-CCCHHHHHHHHHHHHhCH
Confidence 998 775443 57899999999999986543 334455 445677777 3 247899999999999887
Q ss_pred h
Q 010825 453 K 453 (500)
Q Consensus 453 ~ 453 (500)
+
T Consensus 331 ~ 331 (359)
T cd03808 331 E 331 (359)
T ss_pred H
Confidence 6
No 52
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.11 E-value=2.1e-08 Score=100.39 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=92.0
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhC-----CCCEEEEEcCCCCCCCCCCCchHHHHHh--hcCceeeeccch---hH
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNS-----NHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFIASWCPQ---EE 372 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~pq---~~ 372 (500)
++|+++.+-..... ..+..+++++... +.++++....+.. ..+.+.+.. .+++.+.+.+++ ..
T Consensus 198 ~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 270 (365)
T TIGR00236 198 RYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV------VREPLHKHLGDSKRVHLIEPLEYLDFLN 270 (365)
T ss_pred CEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH------HHHHHHHHhCCCCCEEEECCCChHHHHH
Confidence 46666554332211 3456667766553 3455554332211 111122222 247887776654 45
Q ss_pred hhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
++..+++ ||+-+|.. +.||+++|+|+|.++..++++. .+ +.|.+..+ . -++++|.+++.++++|+
T Consensus 271 ~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e---~~--~~g~~~lv-----~--~d~~~i~~ai~~ll~~~ 335 (365)
T TIGR00236 271 LAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE---TV--EAGTNKLV-----G--TDKENITKAAKRLLTDP 335 (365)
T ss_pred HHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH---HH--hcCceEEe-----C--CCHHHHHHHHHHHHhCh
Confidence 7788887 99977654 7999999999999876666553 22 35776655 3 47899999999999887
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010825 453 KGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVN 487 (500)
Q Consensus 453 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 487 (500)
. .+++..+-...+ ..++++.+.++.+.+
T Consensus 336 ~---~~~~~~~~~~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 336 D---EYKKMSNASNPY----GDGEASERIVEELLN 363 (365)
T ss_pred H---HHHHhhhcCCCC----cCchHHHHHHHHHHh
Confidence 5 554443322222 235555555554443
No 53
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.10 E-value=3.8e-07 Score=90.71 Aligned_cols=81 Identities=14% Similarity=0.249 Sum_probs=60.6
Q ss_pred hcCceeeeccchh---HhhccCCcceeEeec----CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTHS----GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
.+++.+.+++|+. .++..+++ +|.-+ +..++.||+++|+|+|+.. ....+..+ +..+.|..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i-~~~~~g~~~---- 326 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLV-ADGENGFLF---- 326 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeC----CCChhhhe-ecCceeEEe----
Confidence 4688899999875 47889998 66433 3468999999999999865 34455556 555778888
Q ss_pred CCCCcCHHHHHHHHHHHhCCCh
Q 010825 432 DDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+. -+. ++.++|.+++++++
T Consensus 327 -~~-~~~-~~~~~i~~l~~~~~ 345 (374)
T cd03817 327 -PP-GDE-ALAEALLRLLQDPE 345 (374)
T ss_pred -CC-CCH-HHHHHHHHHHhChH
Confidence 42 112 89999999999876
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.08 E-value=9.4e-07 Score=87.29 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=63.5
Q ss_pred hhcCceeeeccchh---HhhccCCcceeEe----ecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 358 AKEKGFIASWCPQE---EVLNHPAIGGFFT----HSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 358 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~----HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
...++.+.+++++. .+|..+++ +|. -|.-+++.||+++|+|+|+.+. ......+ ++.+.|...
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~-~~~~~g~~~--- 323 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVV-EDGETGLLV--- 323 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHh-cCCcceEEe---
Confidence 35688899999753 58889998 663 3556799999999999998665 4455556 556777777
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCh
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+ ..+.+++.++|.++++|++
T Consensus 324 --~-~~~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 324 --P-PGDPEALAEAILRLLDDPE 343 (374)
T ss_pred --C-CCCHHHHHHHHHHHHcChH
Confidence 3 2458999999999999876
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.06 E-value=2.3e-06 Score=87.18 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=73.2
Q ss_pred cCceeeeccchh---HhhccCCcceeEeecCc------hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 360 EKGFIASWCPQE---EVLNHPAIGGFFTHSGW------NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 360 ~nv~~~~~~pq~---~lL~~~~~~~~I~HgG~------~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
+|+.+.+|+|+. ++|+.+|+.++.+..+. +.+.|++++|+|+|+....+. .....+ + +.|+.+
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~--~~~~~i-~--~~G~~~--- 355 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT--ELGQLV-E--GIGVCV--- 355 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc--hHHHHH-h--CCcEEe---
Confidence 478899999865 47889998545444332 236899999999999764331 112233 3 678877
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEK-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLL 491 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 491 (500)
+ .-+.+++.++|.++++|+. .+.+++++++..+. .-+.+..++++++.+++
T Consensus 356 --~-~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~-------~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 356 --E-PESVEALVAAIAALARQALLRPKLGTVAREYAER-------TLDKENVLRQFIADIRG 407 (412)
T ss_pred --C-CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-------HcCHHHHHHHHHHHHHH
Confidence 4 3578999999999998875 23455555443321 22335556666555543
No 56
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.06 E-value=6.1e-07 Score=90.89 Aligned_cols=81 Identities=14% Similarity=0.146 Sum_probs=59.5
Q ss_pred cCceeeeccchhH---hhccCCcceeEe---ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 360 EKGFIASWCPQEE---VLNHPAIGGFFT---HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 360 ~nv~~~~~~pq~~---lL~~~~~~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
++|.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+.. .......+ +.-..|..+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i-~~~~~G~lv----- 348 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVI-TDGENGLLV----- 348 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhc-ccCCceEEc-----
Confidence 5788999999754 6788898 553 2333 38999999999999854 34444555 433467666
Q ss_pred CCCcCHHHHHHHHHHHhCCCh
Q 010825 433 DNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+ .-+++++.++|.++++|++
T Consensus 349 ~-~~d~~~la~~i~~ll~~~~ 368 (396)
T cd03818 349 D-FFDPDALAAAVIELLDDPA 368 (396)
T ss_pred C-CCCHHHHHHHHHHHHhCHH
Confidence 3 3579999999999999875
No 57
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=7.9e-07 Score=89.00 Aligned_cols=93 Identities=14% Similarity=0.160 Sum_probs=64.3
Q ss_pred hcCceeeeccch-hHhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
.+++.+.++.++ ..+|..+++ +|.- |.-.++.||+++|+|+|+... ...+..+ ++-..|..+ +
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i-~~~~~G~~~-----~ 319 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVV-KHGETGFLV-----D 319 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhh-cCCCceEEc-----C
Confidence 356888888875 468999998 6622 334599999999999998543 4455555 444567666 3
Q ss_pred CCcCHHHHHHHHHHHhCCChh-HHHHHHHHHH
Q 010825 434 NRVSRNEVEKQVRELMGGEKG-KQMRNKASKW 464 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~~-~~~~~~a~~l 464 (500)
.-+.+++.++|.++++|+.. +.+++++++.
T Consensus 320 -~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~ 350 (371)
T cd04962 320 -VGDVEAMAEYALSLLEDDELWQEFSRAARNR 350 (371)
T ss_pred -CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 24789999999999987651 2344444443
No 58
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.02 E-value=8e-07 Score=89.79 Aligned_cols=81 Identities=12% Similarity=0.192 Sum_probs=62.0
Q ss_pred cCceeeeccchhH---hhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 360 EKGFIASWCPQEE---VLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 360 ~nv~~~~~~pq~~---lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
.++.+.+|+|+.+ ++..+++ +++. |--.++.||+++|+|+|+.+.. .....+ ++.+.|...
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i-~~~~~g~~~----- 350 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIV-VDGVTGLLV----- 350 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHc-cCCCCeEEe-----
Confidence 6788999999765 6889998 7743 2235899999999999986643 344455 556788888
Q ss_pred CCCcCHHHHHHHHHHHhCCCh
Q 010825 433 DNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+. -+.+++.++|.++++|++
T Consensus 351 ~~-~~~~~l~~~i~~l~~~~~ 370 (398)
T cd03800 351 DP-RDPEALAAALRRLLTDPA 370 (398)
T ss_pred CC-CCHHHHHHHHHHHHhCHH
Confidence 42 469999999999998865
No 59
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.01 E-value=7.2e-07 Score=91.26 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=61.4
Q ss_pred eeeeccch-hHhhccCCcceeEee-----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCc
Q 010825 363 FIASWCPQ-EEVLNHPAIGGFFTH-----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRV 436 (500)
Q Consensus 363 ~~~~~~pq-~~lL~~~~~~~~I~H-----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 436 (500)
.+.+.... ..+++.+|+ ++.. +|..++.||+++|+|+|.-|...++......+ .+.|+++.. -
T Consensus 305 ~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~-~~~g~~~~~--------~ 373 (425)
T PRK05749 305 LLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERL-LQAGAAIQV--------E 373 (425)
T ss_pred EEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHH-HHCCCeEEE--------C
Confidence 33343333 468899997 4432 34446999999999999999988888888877 467877777 4
Q ss_pred CHHHHHHHHHHHhCCCh
Q 010825 437 SRNEVEKQVRELMGGEK 453 (500)
Q Consensus 437 ~~~~l~~~i~~vl~~~~ 453 (500)
++++|.++|.++++|++
T Consensus 374 d~~~La~~l~~ll~~~~ 390 (425)
T PRK05749 374 DAEDLAKAVTYLLTDPD 390 (425)
T ss_pred CHHHHHHHHHHHhcCHH
Confidence 68999999999999876
No 60
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.00 E-value=2.8e-07 Score=89.36 Aligned_cols=138 Identities=21% Similarity=0.159 Sum_probs=80.4
Q ss_pred hhhhhhhhhcCCCCCceEEEeecccc----ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCce
Q 010825 288 EETECLQWLDSKEPNSVIYVNFGSII----IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGF 363 (500)
Q Consensus 288 ~~~~l~~~l~~~~~~~vV~vs~Gs~~----~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~ 363 (500)
++.+..+-+... +.+.|++=+-+.. .-....+..+++.+++.+..+|..-+... .++-+. .. ++.
T Consensus 166 Pd~~vl~~lg~~-~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~-------~~~~~~-~~--~~~ 234 (335)
T PF04007_consen 166 PDPEVLKELGLD-DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED-------QRELFE-KY--GVI 234 (335)
T ss_pred CChhHHHHcCCC-CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc-------hhhHHh-cc--Ccc
Confidence 333444444422 3467777666532 12334566788888888776444433322 111111 11 233
Q ss_pred e-eeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHH
Q 010825 364 I-ASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVE 442 (500)
Q Consensus 364 ~-~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~ 442 (500)
+ ..-++..++|.++++ ||+-|| ....||...|+|.|.+ +-++-...-+.+ .+.|.-... -+.+++.
T Consensus 235 i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L-~~~Gll~~~--------~~~~ei~ 301 (335)
T PF04007_consen 235 IPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYL-IEKGLLYHS--------TDPDEIV 301 (335)
T ss_pred ccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHH-HHCCCeEec--------CCHHHHH
Confidence 3 445566689999998 998777 7889999999999984 222322333456 346763333 6777777
Q ss_pred HHHHHHh
Q 010825 443 KQVRELM 449 (500)
Q Consensus 443 ~~i~~vl 449 (500)
+.|.+.+
T Consensus 302 ~~v~~~~ 308 (335)
T PF04007_consen 302 EYVRKNL 308 (335)
T ss_pred HHHHHhh
Confidence 7555444
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.99 E-value=5.5e-08 Score=97.26 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=86.0
Q ss_pred CceEEEeecccccc-CHHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHHH---Hh---hcCceeeeccchh--
Q 010825 302 NSVIYVNFGSIIIM-NKQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEV---KA---KEKGFIASWCPQE-- 371 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~-~~~~~~~l~~al~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~---~~---~~nv~~~~~~pq~-- 371 (500)
++.|++++|..... ....+..++++++.... ++++++..+.. ..+.+.+ +. ..++.+.+..++.
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~------~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~ 271 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR------TRPRIREAGLEFLGHHPNVLLISPLGYLYF 271 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC------hHHHHHHHHHhhccCCCCEEEECCcCHHHH
Confidence 45788888876543 45567778888876533 25444432211 1122222 11 3577777655543
Q ss_pred -HhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 372 -EVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 372 -~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
.++..+++ ||+-+| |.+.||+++|+|+|+++.. |. +..+ .+.|+++.+ .. +.++|.++|.++++
T Consensus 272 ~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~-~~~g~~~~~-----~~--~~~~i~~~i~~ll~ 336 (363)
T cd03786 272 LLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPET-VESGTNVLV-----GT--DPEAILAAIEKLLS 336 (363)
T ss_pred HHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchh-hheeeEEec-----CC--CHHHHHHHHHHHhc
Confidence 56888998 999999 7888999999999998743 22 3344 346877766 32 58999999999999
Q ss_pred CCh
Q 010825 451 GEK 453 (500)
Q Consensus 451 ~~~ 453 (500)
++.
T Consensus 337 ~~~ 339 (363)
T cd03786 337 DEF 339 (363)
T ss_pred Cch
Confidence 874
No 62
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.98 E-value=1.4e-06 Score=86.75 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=71.6
Q ss_pred hcCceeeeccc-hh---HhhccCCcceeEeec----CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 359 KEKGFIASWCP-QE---EVLNHPAIGGFFTHS----GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 359 ~~nv~~~~~~p-q~---~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
..++.+.+|++ +. .+|+.+++ +|.-. ..+++.||+++|+|+|+.... .....+ +..+.|..+
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~-~~~~~g~~~--- 312 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIV-DHGVTGYLA--- 312 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhhe-eCCCceEEe---
Confidence 45788899998 43 57899998 77743 357999999999999986542 333334 333466666
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEK-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+ ..+.+++.+++.++++|++ .+++.+++++. ... .-+.+...+++++.+
T Consensus 313 --~-~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~----~~s~~~~~~~~~~~y 362 (365)
T cd03825 313 --K-PGDPEDLAEGIEWLLADPDEREELGEAAREL---AEN----EFDSRVQAKRYLSLY 362 (365)
T ss_pred --C-CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HHH----hcCHHHHHHHHHHHH
Confidence 3 3578999999999998875 12233333322 221 234455666666544
No 63
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.96 E-value=2.2e-06 Score=84.95 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=82.2
Q ss_pred CceEEEeeccccc-cCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHH-----hhcCceeeeccchh---H
Q 010825 302 NSVIYVNFGSIII-MNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK-----AKEKGFIASWCPQE---E 372 (500)
Q Consensus 302 ~~vV~vs~Gs~~~-~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~nv~~~~~~pq~---~ 372 (500)
+..+++..|+... ...+.+-..+..+...+..+.+.+.+... ..+.+.+. ...|+.+.+++|+. .
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~~------~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 274 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDGP------LREALEALAAELGLEDRVTFLGAVPHEEVPA 274 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCCc------chHHHHHHHHhcCCcceEEEeCCCCHHHHHH
Confidence 3467777888643 22333333333333332344444332221 11112221 24688999999874 5
Q ss_pred hhccCCcceeE----eecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHH
Q 010825 373 VLNHPAIGGFF----THSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVREL 448 (500)
Q Consensus 373 lL~~~~~~~~I----~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~v 448 (500)
++..+++ +| +-|.-+++.||+++|+|+|+-+.. .....+ +..+.|... + .-+.+++.++|.++
T Consensus 275 ~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~-~~~~~g~~~-----~-~~~~~~l~~~i~~~ 341 (377)
T cd03798 275 YYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEII-TDGENGLLV-----P-PGDPEALAEAILRL 341 (377)
T ss_pred HHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHh-cCCcceeEE-----C-CCCHHHHHHHHHHH
Confidence 7888888 55 235567899999999999986543 344555 555667777 3 35899999999999
Q ss_pred hCCCh
Q 010825 449 MGGEK 453 (500)
Q Consensus 449 l~~~~ 453 (500)
+++..
T Consensus 342 ~~~~~ 346 (377)
T cd03798 342 LADPW 346 (377)
T ss_pred hcCcH
Confidence 99875
No 64
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.96 E-value=3.3e-06 Score=92.20 Aligned_cols=397 Identities=12% Similarity=0.103 Sum_probs=194.6
Q ss_pred cccCCCcEEEEEcCC---------------CcCcHHHHHHHHHHHHhCC--CEEEEEeCCcchhhh--------hhhcC-
Q 010825 5 AIACSKVHAVCIPSP---------------SQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRF--------LKSRG- 58 (500)
Q Consensus 5 ~~~~~~~~il~~~~~---------------~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~v--------~~~~~- 58 (500)
+++.+|+.|+++..- +.|+..-.+.||++|+++| |+|.++|-......+ +...+
T Consensus 164 ~~~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~ 243 (1050)
T TIGR02468 164 QQKEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPR 243 (1050)
T ss_pred hcccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccc
Confidence 345678889888643 2357888999999999998 899999864332111 10000
Q ss_pred -----CCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHHHHHHHHHhccchHHHHH----HHHhhcCCCCCCCCeeEEEE
Q 010825 59 -----EHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVMLHPFLDL----LAKLNDSSNSVNPAVSCIIS 129 (500)
Q Consensus 59 -----~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----l~~l~~~~~~~~~~pDlvI~ 129 (500)
.......++..++.+|.+-... .-....+...+..|.+.+ ...+.++ .+++.. .-...||+|-+
T Consensus 244 ~~~~~~~~~~~~~g~rIvRip~GP~~~---~l~Ke~L~~~l~ef~d~~-l~~~~~~~~~~~~~~~~---~~~~~pDvIHa 316 (1050)
T TIGR02468 244 SSENDGDEMGESSGAYIIRIPFGPRDK---YIPKEELWPYIPEFVDGA-LSHIVNMSKVLGEQIGS---GHPVWPYVIHG 316 (1050)
T ss_pred ccccccccccCCCCeEEEEeccCCCCC---CcCHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhcc---ccCCCCCEEEE
Confidence 0111233477777877554321 112223344444444444 3222221 122110 00125999998
Q ss_pred cCCcc--hHHHHHHHhCCCeEEEeccchhHHHHHhhhhhhhhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcc
Q 010825 130 DGFLP--FTVTAAQQLGLPIVLLFTISACSFMGFKQFRTFKEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSF 207 (500)
Q Consensus 130 D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (500)
..... .+..+++.+|||+|...++....- ..... ..+... ...+...
T Consensus 317 Hyw~sG~aa~~L~~~lgVP~V~T~HSLgr~K-----~~~ll------------------------~~g~~~--~~~~~~~ 365 (1050)
T TIGR02468 317 HYADAGDSAALLSGALNVPMVLTGHSLGRDK-----LEQLL------------------------KQGRMS--KEEINST 365 (1050)
T ss_pred CcchHHHHHHHHHHhhCCCEEEECccchhhh-----hhhhc------------------------cccccc--ccccccc
Confidence 86443 678889999999998755522100 00000 000000 0000000
Q ss_pred cccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHHHH--Hhh-------------------hCCCcceecCCchh
Q 010825 208 VRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVLNA--LSF-------------------IFPLQLFTIGPLQL 266 (500)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~~~--~~~-------------------~~p~~~~~vGpl~~ 266 (500)
. .+...+.--...+..++.++.+|..+.+..+--| ..+ ..+ ++..|.|=..
T Consensus 366 y-------~~~~Ri~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~-ri~VIPpGVD 437 (1050)
T TIGR02468 366 Y-------KIMRRIEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMP-RMAVIPPGME 437 (1050)
T ss_pred c-------chHHHHHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCC-CeEEeCCCCc
Confidence 0 0001111112234778889999977766433222 010 122 4444443322
Q ss_pred hhhhhhhh-cccccccC------CCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHHHHhCC-----CCE
Q 010825 267 LLNQIEEK-DGMLNYIG------YNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVNSN-----HPF 334 (500)
Q Consensus 267 ~~~~~~~~-~~~~~~~~------~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~-----~~~ 334 (500)
...=.|.. +..-..+. ......+.++..|+... .++ ++++.|... +..-+..+++|+..+. .++
T Consensus 438 ~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~~~p-dkp-vIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL 513 (1050)
T TIGR02468 438 FSHIVPHDGDMDGETEGNEEHPAKPDPPIWSEIMRFFTNP-RKP-MILALARPD--PKKNITTLVKAFGECRPLRELANL 513 (1050)
T ss_pred HHHccCCCccccchhcccccccccccchhhHHHHhhcccC-CCc-EEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCE
Confidence 11100000 00000000 00001233566777533 333 556667764 2223444555554431 245
Q ss_pred EEEEcCCCCCCCCC-CCc---hHH---HHH--hhcCceeeeccchhH---hhccC----CcceeEee---cCc-hhHHHH
Q 010825 335 LWIIRPDLVTGETA-DLP---AEF---EVK--AKEKGFIASWCPQEE---VLNHP----AIGGFFTH---SGW-NSTIES 394 (500)
Q Consensus 335 v~~~~~~~~~~~~~-~~~---~~~---~~~--~~~nv~~~~~~pq~~---lL~~~----~~~~~I~H---gG~-~s~~ea 394 (500)
.++++......... ... ..+ .++ +.++|.+.+++++.+ ++..+ ++ ||.- =|+ .++.||
T Consensus 514 ~LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEA 591 (1050)
T TIGR02468 514 TLIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEA 591 (1050)
T ss_pred EEEEecCchhhhhhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHH
Confidence 45555432110000 000 011 111 236788888888754 56655 35 7763 343 489999
Q ss_pred HhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHHH
Q 010825 395 LCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK-GKQMRNKASKW 464 (500)
Q Consensus 395 l~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l 464 (500)
+++|+|+|+....+ ....+ +.-..|+.+ +. -++++|.++|.++++|+. .++|.+++++.
T Consensus 592 MAcGlPVVASdvGG----~~EII-~~g~nGlLV-----dP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~ 651 (1050)
T TIGR02468 592 AAHGLPMVATKNGG----PVDIH-RVLDNGLLV-----DP-HDQQAIADALLKLVADKQLWAECRQNGLKN 651 (1050)
T ss_pred HHhCCCEEEeCCCC----cHHHh-ccCCcEEEE-----CC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999976432 22333 333467777 43 578999999999999876 23455554443
No 65
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.88 E-value=7.4e-06 Score=81.32 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=59.5
Q ss_pred hcCceeeeccchh---HhhccCCcceeEeec----CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTHS----GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
.+++.+.+|+++. .++..+++ +|.-. --+++.||+++|+|+|+.+. ......+ .. +.|...
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~-~~-~~~~~~---- 328 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELI-EY-GCGWVV---- 328 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHh-hc-CceEEe----
Confidence 4688899999954 46888898 55432 24689999999999999653 3445555 44 777777
Q ss_pred CCCCcCHHHHHHHHHHHhCCCh
Q 010825 432 DDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+. +.+++.++|.+++++++
T Consensus 329 -~~--~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 329 -DD--DVDALAAALRRALELPQ 347 (375)
T ss_pred -CC--ChHHHHHHHHHHHhCHH
Confidence 43 34999999999999865
No 66
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.87 E-value=3.4e-06 Score=86.58 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=58.7
Q ss_pred hcCceeeeccchhH---hhccC----CcceeEeec---C-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEe
Q 010825 359 KEKGFIASWCPQEE---VLNHP----AIGGFFTHS---G-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 359 ~~nv~~~~~~pq~~---lL~~~----~~~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 427 (500)
.++|.+.+++++.+ +|+.+ ++ ||.-. | -.++.||+++|+|+|+... ......+ +.-..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv-~~~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDII-ANCRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHh-cCCCcEEEe
Confidence 46778888888655 46655 66 77644 4 3499999999999998654 3344444 444467777
Q ss_pred eeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 428 INGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 428 ~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+ .-+++++.++|.++++|+.
T Consensus 389 -----~-~~d~~~la~~i~~ll~~~~ 408 (439)
T TIGR02472 389 -----D-VLDLEAIASALEDALSDSS 408 (439)
T ss_pred -----C-CCCHHHHHHHHHHHHhCHH
Confidence 3 2578999999999999875
No 67
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.86 E-value=4.7e-06 Score=82.75 Aligned_cols=140 Identities=15% Similarity=0.172 Sum_probs=86.1
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHHH-----HhhcCceeeeccchh---Hh
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFEV-----KAKEKGFIASWCPQE---EV 373 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~nv~~~~~~pq~---~l 373 (500)
..+++..|+.. .......++++++... .++++.-. +. ..+.+.+ ....||.+.+|+|+. .+
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~-g~-------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~ 260 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGE-GP-------LEAELEALAAALGLLDRVRFLGRLDDEEKAAL 260 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeC-Ch-------hHHHHHHHHHhcCCcceEEEcCCCCHHHHHHH
Confidence 35777788864 2233455667776665 34444332 21 1122221 124689999999974 48
Q ss_pred hccCCcceeEe---ecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhh-hcceeEeeeCCCCCCcCHHHHHHHHHHH
Q 010825 374 LNHPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNE-WGVGLEIINGGDDNRVSRNEVEKQVREL 448 (500)
Q Consensus 374 L~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-~G~g~~~~~~~~~~~~~~~~l~~~i~~v 448 (500)
++.+++.++.+ +.|.| ++.||+++|+|+|+....+... .+ +. .+.|... + .-+.+++.++|.++
T Consensus 261 ~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i-~~~~~~g~~~-----~-~~d~~~~~~~i~~l 329 (357)
T cd03795 261 LAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YV-NLHGVTGLVV-----P-PGDPAALAEAIRRL 329 (357)
T ss_pred HHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HH-hhCCCceEEe-----C-CCCHHHHHHHHHHH
Confidence 88899833323 23433 7999999999999965544443 33 22 4666666 3 35899999999999
Q ss_pred hCCChh-HHHHHHHHH
Q 010825 449 MGGEKG-KQMRNKASK 463 (500)
Q Consensus 449 l~~~~~-~~~~~~a~~ 463 (500)
++|++. +++++++++
T Consensus 330 ~~~~~~~~~~~~~~~~ 345 (357)
T cd03795 330 LEDPELRERLGEAARE 345 (357)
T ss_pred HHCHHHHHHHHHHHHH
Confidence 998761 234444433
No 68
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.82 E-value=1.4e-05 Score=80.67 Aligned_cols=91 Identities=12% Similarity=0.127 Sum_probs=63.2
Q ss_pred hcCceeeeccchh---HhhccCCcceeEee---cC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTH---SG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
.++|.+.+++|+. .+|..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+ ...+.|...
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i-~~~~~g~~~---- 347 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETV-VDGETGFLC---- 347 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHh-ccCCceEEe----
Confidence 3578999999975 57888998 6642 22 25789999999999996442 333445 444567666
Q ss_pred CCCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHH
Q 010825 432 DDNRVSRNEVEKQVRELMGGEK-GKQMRNKASK 463 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 463 (500)
+. +.+++.++|.+++++++ .+++.+++++
T Consensus 348 -~~--~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 348 -EP--TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred -CC--CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 43 78999999999999875 1234444433
No 69
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.82 E-value=1.9e-05 Score=80.24 Aligned_cols=91 Identities=13% Similarity=0.151 Sum_probs=64.3
Q ss_pred cCceeeeccchh---HhhccCCcceeEe---ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 360 EKGFIASWCPQE---EVLNHPAIGGFFT---HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 360 ~nv~~~~~~pq~---~lL~~~~~~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
+++.+.+++|+. ++|+.+++ +|. +.|+ .++.||+++|+|+|+.... .....+ +.-+.|..+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i-~~~~~g~~~----- 350 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAV-ADGETGLLV----- 350 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhh-ccCCceEEC-----
Confidence 578999999864 57999998 663 2343 5899999999999986543 344445 445567777
Q ss_pred CCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHH
Q 010825 433 DNRVSRNEVEKQVRELMGGEK-GKQMRNKASK 463 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~ 463 (500)
+. -+.+++.++|.++++|+. .+++++++++
T Consensus 351 ~~-~d~~~la~~i~~~l~~~~~~~~~~~~~~~ 381 (405)
T TIGR03449 351 DG-HDPADWADALARLLDDPRTRIRMGAAAVE 381 (405)
T ss_pred CC-CCHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 42 578999999999998765 1234444444
No 70
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.81 E-value=9.5e-06 Score=79.54 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=58.5
Q ss_pred cCceeeeccch-hHhhccCCcceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhc-ceeEeeeCCCC
Q 010825 360 EKGFIASWCPQ-EEVLNHPAIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWG-VGLEIINGGDD 433 (500)
Q Consensus 360 ~nv~~~~~~pq-~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~ 433 (500)
.++.+.++... ..++..+++ +|.-+. -+++.||+++|+|+|+.+..+.+. .+.+ .| .|... +
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~-~~~~g~~~-----~ 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIE-DGVNGLLV-----P 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhc-cCcceEEe-----C
Confidence 46677777443 569999998 665542 568999999999999866544332 2323 34 77777 4
Q ss_pred CCcCHHHHHHHHHHHhCCCh
Q 010825 434 NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~ 453 (500)
..+.+++.++|.++++|++
T Consensus 303 -~~~~~~~~~~i~~ll~~~~ 321 (348)
T cd03820 303 -NGDVEALAEALLRLMEDEE 321 (348)
T ss_pred -CCCHHHHHHHHHHHHcCHH
Confidence 3568999999999999886
No 71
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.77 E-value=2.7e-05 Score=78.88 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=55.4
Q ss_pred hcCceeeeccchh---HhhccCCcceeEe---ecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
.+++.+.+|+|+. .+|+.+++ +|. +-|+| ++.||+++|+|+|+.+..+ ....+ + .|.+...
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i-~-~~~~~~~---- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVL-P-PDMILLA---- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhhe-e-CCceeec----
Confidence 3568889999864 48889998 654 33444 9999999999999966642 22334 3 2433223
Q ss_pred CCCCcCHHHHHHHHHHHhCCC
Q 010825 432 DDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~ 452 (500)
. .+.+++.+++.+++++.
T Consensus 317 -~--~~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 317 -E--PDVESIVRKLEEAISIL 334 (398)
T ss_pred -C--CCHHHHHHHHHHHHhCh
Confidence 2 27899999999999864
No 72
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.76 E-value=9.4e-06 Score=81.08 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred hcCceeeeccchh---HhhccCCcceeEee----------cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhccee
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTH----------SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGL 425 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~H----------gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~ 425 (500)
.+++.+.+++|+. .+|..+++ +|.- |-.+++.||+++|+|+|+-+.. .++..+ +..+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i-~~~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAV-EDGETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhhe-ecCCeeE
Confidence 4678889999864 46889998 6542 2356899999999999986653 355555 4567787
Q ss_pred EeeeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 426 EIINGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
.+ + .-+.+++.++|.++++|++
T Consensus 317 ~~-----~-~~d~~~l~~~i~~l~~~~~ 338 (367)
T cd05844 317 LV-----P-EGDVAALAAALGRLLADPD 338 (367)
T ss_pred EE-----C-CCCHHHHHHHHHHHHcCHH
Confidence 77 4 3578999999999999875
No 73
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.75 E-value=1.8e-05 Score=78.64 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=58.1
Q ss_pred hcCceeee-ccch---hHhhccCCcceeEe--e----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEee
Q 010825 359 KEKGFIAS-WCPQ---EEVLNHPAIGGFFT--H----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEII 428 (500)
Q Consensus 359 ~~nv~~~~-~~pq---~~lL~~~~~~~~I~--H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 428 (500)
..++.+.+ |+|+ ..+++.+++ +|. + |..+++.||+++|+|+|+.+..+ ...+ ...+.|...
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i-~~~~~g~~~- 316 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEV-LDGGTGLLV- 316 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hhee-eeCCCcEEE-
Confidence 45777764 4886 358889998 652 1 33458999999999999977544 2334 345677776
Q ss_pred eCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 429 NGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+. -+.+++.+++.++++|++
T Consensus 317 ----~~-~d~~~~~~~l~~l~~~~~ 336 (366)
T cd03822 317 ----PP-GDPAALAEAIRRLLADPE 336 (366)
T ss_pred ----cC-CCHHHHHHHHHHHHcChH
Confidence 42 468999999999999865
No 74
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.74 E-value=8.7e-06 Score=80.11 Aligned_cols=127 Identities=12% Similarity=-0.012 Sum_probs=78.0
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHH---hhcCceeeeccchh---HhhccCC
Q 010825 305 IYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK---AKEKGFIASWCPQE---EVLNHPA 378 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~nv~~~~~~pq~---~lL~~~~ 378 (500)
+++..|... .......+++++++.+.++++.-..... . ........ ..+++.+.+++++. .+++.++
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-~----~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d 245 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-D----YFYREIAPELLDGPDIEYLGEVGGAEKAELLGNAR 245 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-H----HHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCc
Confidence 455567763 2223445667777777776655432211 0 00111111 24789999999975 4688888
Q ss_pred cceeEe--ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCC
Q 010825 379 IGGFFT--HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGG 451 (500)
Q Consensus 379 ~~~~I~--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~ 451 (500)
+-++-+ +-|+ .++.||+++|+|+|+... ......+ +.-..|... +. .+++.+++.++++.
T Consensus 246 ~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i-~~~~~g~l~-----~~---~~~l~~~l~~l~~~ 308 (335)
T cd03802 246 ALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVV-EDGVTGFLV-----DS---VEELAAAVARADRL 308 (335)
T ss_pred EEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhhe-eCCCcEEEe-----CC---HHHHHHHHHHHhcc
Confidence 822222 2343 489999999999998654 3333444 433367777 43 99999999988754
No 75
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.72 E-value=3.2e-05 Score=78.46 Aligned_cols=73 Identities=12% Similarity=0.172 Sum_probs=52.4
Q ss_pred eeeccchhHhhccCCcceeEeec----CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHH
Q 010825 364 IASWCPQEEVLNHPAIGGFFTHS----GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRN 439 (500)
Q Consensus 364 ~~~~~pq~~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~ 439 (500)
+.++.+..+++...|+ ||.=+ =.+++.||+++|+|+|+.-... + ..+ ..-+.|... -+.+
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v-~~~~ng~~~--------~~~~ 351 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFF-KQFPNCRTY--------DDGK 351 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-cee-ecCCceEec--------CCHH
Confidence 4666666779999998 88763 3568999999999999965432 2 223 333444444 4688
Q ss_pred HHHHHHHHHhCCC
Q 010825 440 EVEKQVRELMGGE 452 (500)
Q Consensus 440 ~l~~~i~~vl~~~ 452 (500)
++.++|.++|.++
T Consensus 352 ~~a~ai~~~l~~~ 364 (462)
T PLN02846 352 GFVRATLKALAEE 364 (462)
T ss_pred HHHHHHHHHHccC
Confidence 9999999999854
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.71 E-value=5.7e-05 Score=74.84 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=60.4
Q ss_pred hcCceeeeccchh---HhhccCCcceeEe----------ecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhccee
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFT----------HSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGL 425 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~----------HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~ 425 (500)
++|+.+.+++|+. .++..+++ +|. =|.-+++.||+++|+|+|+.+... ....+ +....|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i-~~~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELV-EDGETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhh-hCCCceE
Confidence 4689999999854 47788998 555 233468999999999999865422 22344 4444777
Q ss_pred EeeeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 426 EIINGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
.+ +. -+.+++.++|.++++|+.
T Consensus 308 ~~-----~~-~~~~~l~~~i~~~~~~~~ 329 (355)
T cd03799 308 LV-----PP-GDPEALADAIERLLDDPE 329 (355)
T ss_pred Ee-----CC-CCHHHHHHHHHHHHhCHH
Confidence 77 42 488999999999999875
No 77
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.70 E-value=4.9e-05 Score=75.41 Aligned_cols=135 Identities=12% Similarity=0.108 Sum_probs=77.4
Q ss_pred CceEEEeecccc-ccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHH---HH--HhhcCceeeeccch-hHh
Q 010825 302 NSVIYVNFGSII-IMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEF---EV--KAKEKGFIASWCPQ-EEV 373 (500)
Q Consensus 302 ~~vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~---~~--~~~~nv~~~~~~pq-~~l 373 (500)
+..+++..|... .-+.+.+...+..+...+..+ +++++....... ..+.. .+ ...++|.+.+|.+. ..+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~~~~---~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 260 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQGRRF---YYAELLELIKRLGLQDRVTFVGHCSDMPAA 260 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcccch---HHHHHHHHHHHcCCcceEEEcCCcccHHHH
Confidence 345677778764 234455555555555533333 233332221100 11111 11 12457888888654 468
Q ss_pred hccCCcceeEe--ecC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 374 LNHPAIGGFFT--HSG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 374 L~~~~~~~~I~--HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
|..+++-++-+ +-| -+++.||+++|+|+|+... ......+ +..+.|..+ + .-+.+++.++|..++.
T Consensus 261 l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i-~~~~~g~~~-----~-~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 261 YALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETV-RPGETGLLV-----P-PGDAEALAQALDQILS 329 (355)
T ss_pred HHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHH-hCCCceEEe-----C-CCCHHHHHHHHHHHHh
Confidence 99999822222 123 3599999999999998543 2334445 444577777 4 3588999999976665
No 78
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.69 E-value=2.9e-05 Score=77.54 Aligned_cols=131 Identities=15% Similarity=0.193 Sum_probs=80.5
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHHH-----hhcCceeeeccch--h---
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVK-----AKEKGFIASWCPQ--E--- 371 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~-----~~~nv~~~~~~pq--~--- 371 (500)
+.+++..|.........+..+++++.....++ ++.++.+. ..+.+.+. .+++|.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~-------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~ 252 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS-------DFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQ 252 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc-------cHHHHHHHHHHcCCCCeEEEecccCCcHHHHH
Confidence 35677788764323334556677776653333 23334332 11222221 2468889998754 2
Q ss_pred HhhccCCcceeEee----cCchhHHHHHhcCCceeeCC-cccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWP-FLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVR 446 (500)
Q Consensus 372 ~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~ 446 (500)
+.+..+++ +|.- |--.++.||+++|+|+|+.- ..+ ....+ +.-..|..+ +. -+.+++.++|.
T Consensus 253 ~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv-~~~~~G~lv-----~~-~d~~~la~~i~ 319 (359)
T PRK09922 253 QKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDII-KPGLNGELY-----TP-GNIDEFVGKLN 319 (359)
T ss_pred HHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHc-cCCCceEEE-----CC-CCHHHHHHHHH
Confidence 34556777 6643 33569999999999999865 322 22234 444567777 43 58999999999
Q ss_pred HHhCCCh
Q 010825 447 ELMGGEK 453 (500)
Q Consensus 447 ~vl~~~~ 453 (500)
++++|++
T Consensus 320 ~l~~~~~ 326 (359)
T PRK09922 320 KVISGEV 326 (359)
T ss_pred HHHhCcc
Confidence 9999886
No 79
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.65 E-value=3.8e-05 Score=76.25 Aligned_cols=108 Identities=10% Similarity=0.100 Sum_probs=68.0
Q ss_pred hcCceeeeccch-hHhhccCCcceeEeec----CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFTHS----GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~Hg----G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
.+|+.+.++..+ ..+|..+++ +|.-. ..+++.||+++|+|+|+. |...+...+ +. .|..+ .
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i-~~--~g~~~-----~ 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVV-GD--SGLIV-----P 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEe-cC--CceEe-----C
Confidence 357888888765 579999998 55533 256899999999999974 445555556 44 34444 2
Q ss_pred CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010825 434 NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVN 487 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 487 (500)
.-+.+++.++|.++++++. .+++...+-++.+.+ .-+-+...+++.+
T Consensus 310 -~~~~~~~~~~i~~ll~~~~--~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 356 (360)
T cd04951 310 -ISDPEALANKIDEILKMSG--EERDIIGARRERIVK----KFSINSIVQQWLT 356 (360)
T ss_pred -CCCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHH----hcCHHHHHHHHHH
Confidence 2688999999999995432 144444333333333 2333444444443
No 80
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.64 E-value=8.1e-06 Score=79.94 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=94.9
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCC-EEEEEcCCCCCCCCCCCchHHHHHhhc--CceeeeccchhHhhccCCc
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHP-FLWIIRPDLVTGETADLPAEFEVKAKE--KGFIASWCPQEEVLNHPAI 379 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~--nv~~~~~~pq~~lL~~~~~ 379 (500)
++|.+--||..+--...+-.++++...+..+ .++.+..... . +.+.+.... .+.+.+ .-.++|..+|+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~------~-~~i~~~~~~~~~~~~~~--~~~~~m~~aDl 238 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK------G-KDLKEIYGDISEFEISY--DTHKALLEAEF 238 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc------H-HHHHHHHhcCCCcEEec--cHHHHHHhhhH
Confidence 6899999998643334555455555443322 3333322110 1 222222211 222222 33579999999
Q ss_pred ceeEeecCchhHHHHHhcCCceeeCCcc--cchhhhHHHhhh---hhcceeEeee----CC-----CCCCcCHHHHHHHH
Q 010825 380 GGFFTHSGWNSTIESLCAGVPMICWPFL--GDQPTNCRYTCN---EWGVGLEIIN----GG-----DDNRVSRNEVEKQV 445 (500)
Q Consensus 380 ~~~I~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~~~~---~~G~g~~~~~----~~-----~~~~~~~~~l~~~i 445 (500)
+|+-+|..|+ |++.+|+|+|+ ++- .-|+.||+++ . ..|+...+.+ +. .+...|++.|.+++
T Consensus 239 --al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~l-v~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i 313 (347)
T PRK14089 239 --AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMF-VKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAY 313 (347)
T ss_pred --HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHH-HcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHH
Confidence 9999999999 99999999999 553 4578899998 4 4555554421 00 13578999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHH
Q 010825 446 RELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKL 485 (500)
Q Consensus 446 ~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l 485 (500)
.+ ... +++++...++++.+. . |.+.+..+.+
T Consensus 314 ~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i 344 (347)
T PRK14089 314 KE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKIL 344 (347)
T ss_pred HH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHH
Confidence 87 211 135666666666553 2 4445554443
No 81
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.63 E-value=0.00024 Score=70.05 Aligned_cols=107 Identities=16% Similarity=0.199 Sum_probs=68.5
Q ss_pred cCceeeeccch-hHhhccCCcceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCC
Q 010825 360 EKGFIASWCPQ-EEVLNHPAIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDN 434 (500)
Q Consensus 360 ~nv~~~~~~pq-~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 434 (500)
.++.+.+...+ ..++..+++ +|..+. -+++.||+++|+|+|+. |...+...+ ++ .|..+ +
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~----~~~~~~e~~-~~--~g~~~-----~- 315 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVAT----DVGDNAELV-GD--TGFLV-----P- 315 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEc----CCCChHHHh-hc--CCEEe-----C-
Confidence 45666665554 569999998 776544 37999999999999984 344455555 44 56666 3
Q ss_pred CcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010825 435 RVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVN 487 (500)
Q Consensus 435 ~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 487 (500)
.-+.+++.++|.++++|++ .+++..+..++.+++ .-+-...++++++
T Consensus 316 ~~~~~~l~~~i~~l~~~~~--~~~~~~~~~~~~~~~----~~s~~~~~~~~~~ 362 (365)
T cd03807 316 PGDPEALAEAIEALLADPA--LRQALGEAARERIEE----NFSIEAMVEAYEE 362 (365)
T ss_pred CCCHHHHHHHHHHHHhChH--HHHHHHHHHHHHHHH----hCCHHHHHHHHHH
Confidence 2468999999999999865 233333333334433 2343444544444
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.61 E-value=6.4e-05 Score=73.68 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=57.2
Q ss_pred hcCceeeeccch-hHhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
..++.+.++.+. .+++..+++ +|.- |.-+++.||+++|+|+|+.... .....+ +..+.|... +
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i-~~~~~g~~~-----~ 312 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREIL-EDGENGLLV-----P 312 (353)
T ss_pred CccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHh-cCCCceEEE-----C
Confidence 357888888775 469999998 6632 3356899999999999985443 455556 566778877 4
Q ss_pred CCcCHHHH---HHHHHHHhCCCh
Q 010825 434 NRVSRNEV---EKQVRELMGGEK 453 (500)
Q Consensus 434 ~~~~~~~l---~~~i~~vl~~~~ 453 (500)
. -+.+.+ .+++.++++++.
T Consensus 313 ~-~~~~~~~~~~~~i~~~~~~~~ 334 (353)
T cd03811 313 V-GDEAALAAAALALLDLLLDPE 334 (353)
T ss_pred C-CCHHHHHHHHHHHHhccCChH
Confidence 3 456666 566666666654
No 83
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.53 E-value=0.00019 Score=71.21 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=58.7
Q ss_pred hcCceeeeccch-hHhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
.+++.+.++..+ .+++..+++ +|+- |--.++.||+++|+|+|+....+ ....+ +. +.+... .
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i-~~-~~~~~~-----~ 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDL-TD-LVKFLS-----L 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhh-cc-CccEEe-----C
Confidence 457888887555 569999998 6543 44679999999999999855433 33344 43 555555 3
Q ss_pred CCcCHHHHHHHHHHHhCCCh
Q 010825 434 NRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~ 453 (500)
.-+++++.++|.++++|+.
T Consensus 315 -~~~~~~~a~~i~~l~~~~~ 333 (358)
T cd03812 315 -DESPEIWAEEILKLKSEDR 333 (358)
T ss_pred -CCCHHHHHHHHHHHHhCcc
Confidence 2357999999999999886
No 84
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.53 E-value=0.00016 Score=73.72 Aligned_cols=81 Identities=15% Similarity=0.119 Sum_probs=56.3
Q ss_pred hcCceeeeccchh---HhhccCCcceeEeec---Cc-hhHHHHHhcCCceeeCCcccchhhhHHHhhh---hhcceeEee
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTHS---GW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCN---EWGVGLEII 428 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~Hg---G~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~---~~G~g~~~~ 428 (500)
.++|.+.+++|+. .+|..+++ +|+-. |+ -++.||+++|+|+|+.-..+.- .-+++ .-..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~----~~iv~~~~~g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL----LDIVVPWDGGPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCCc----hheeeccCCCCceEEe-
Confidence 4688899999865 58889888 66421 22 3889999999999985433211 11112 23466666
Q ss_pred eCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 429 NGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
-+++++.++|.++++++.
T Consensus 377 -------~d~~~la~ai~~ll~~~~ 394 (419)
T cd03806 377 -------STAEEYAEAIEKILSLSE 394 (419)
T ss_pred -------CCHHHHHHHHHHHHhCCH
Confidence 389999999999998754
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.51 E-value=0.00014 Score=72.39 Aligned_cols=126 Identities=15% Similarity=0.207 Sum_probs=70.9
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHH--HHhhcCceeeeccchh---HhhccC
Q 010825 305 IYVNFGSIIIMNKQQLIEVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFIASWCPQE---EVLNHP 377 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~l~~al~~~~--~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~~pq~---~lL~~~ 377 (500)
.++..|+... ...+..+++++.... .+++ .++....... .-+... ....++|.+.+++|+. +++..+
T Consensus 195 ~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~-ivG~~~~~~~---~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 195 YYLLVGRIVP--ENNIDDLIEAFSKSNSGKKLV-IVGNADHNTP---YGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEEecccc--cCCHHHHHHHHHhhccCceEE-EEcCCCCcch---HHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 3455787642 223445566666554 3443 3443211110 111111 1224688999999986 467777
Q ss_pred CcceeEeecCc-----hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 378 AIGGFFTHSGW-----NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 378 ~~~~~I~HgG~-----~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
++ ++-++-. +++.||+++|+|+|+..... +...+ +. .|... +. .+.+.++|.++++|+
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~-~~--~g~~~-----~~---~~~l~~~i~~l~~~~ 331 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVL-GD--KAIYF-----KV---GDDLASLLEELEADP 331 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceee-cC--CeeEe-----cC---chHHHHHHHHHHhCH
Confidence 77 6554433 47999999999999865432 22223 32 23333 21 112999999999886
Q ss_pred h
Q 010825 453 K 453 (500)
Q Consensus 453 ~ 453 (500)
+
T Consensus 332 ~ 332 (363)
T cd04955 332 E 332 (363)
T ss_pred H
Confidence 5
No 86
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.51 E-value=5.9e-05 Score=74.81 Aligned_cols=81 Identities=11% Similarity=0.184 Sum_probs=56.8
Q ss_pred hhcCceeeeccchh---HhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 358 AKEKGFIASWCPQE---EVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 358 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
...++.+.+++|+. ++|..+++ +|.- |..+++.||+++|+|+|+... ......+ .+ .|..+
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~----~~~~e~~-~~--~~~~~--- 318 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNI----SSLPEVA-GD--AALYF--- 318 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCC----CCcccee-cC--ceeee---
Confidence 35788899999875 57888888 4432 335589999999999998544 2222223 32 24444
Q ss_pred CCCCCcCHHHHHHHHHHHhCCCh
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
. .-+.+++.++|.++++|++
T Consensus 319 --~-~~~~~~~~~~i~~l~~~~~ 338 (365)
T cd03809 319 --D-PLDPEALAAAIERLLEDPA 338 (365)
T ss_pred --C-CCCHHHHHHHHHHHhcCHH
Confidence 2 2478999999999999876
No 87
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.51 E-value=0.00085 Score=72.11 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=50.8
Q ss_pred cCceeeecc-ch---hHhhcc-C---CcceeEe---ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEe
Q 010825 360 EKGFIASWC-PQ---EEVLNH-P---AIGGFFT---HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 360 ~nv~~~~~~-pq---~~lL~~-~---~~~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 427 (500)
++|.+.++. +. .+++.+ + ++ ||. .=|+ .++.||+++|+|+|+.-. ...+..+ +.-.-|..+
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adV--fV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV-~dg~tGfLV 691 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGI--FVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEII-QDGVSGFHI 691 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcE--EEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEe
Confidence 567777764 32 245543 2 35 664 2333 499999999999998543 3455555 444568888
Q ss_pred eeCCCCCCcCHHHHHHHHHHHh
Q 010825 428 INGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 428 ~~~~~~~~~~~~~l~~~i~~vl 449 (500)
+. -+++++.++|.+++
T Consensus 692 -----dp-~D~eaLA~aL~~ll 707 (784)
T TIGR02470 692 -----DP-YHGEEAAEKIVDFF 707 (784)
T ss_pred -----CC-CCHHHHHHHHHHHH
Confidence 53 47899999998876
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=0.00031 Score=68.76 Aligned_cols=322 Identities=15% Similarity=0.167 Sum_probs=175.5
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEe-CCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcccc
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVN-TEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQD 89 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~-~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 89 (500)
.+-+=--|.|-++-..+|.++|.++ ++.|++-+ ++...+.+.+..++ .+....+| -.
T Consensus 51 ~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-------~v~h~YlP----~D--------- 110 (419)
T COG1519 51 LVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-------SVIHQYLP----LD--------- 110 (419)
T ss_pred eEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-------CeEEEecC----cC---------
Confidence 4444456889999999999999999 88888877 56666766665331 12222222 11
Q ss_pred HHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEE-cC-CcchHHHHHHHhCCCeEEEeccchhHHHHHhhhhhh
Q 010825 90 MYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIIS-DG-FLPFTVTAAQQLGLPIVLLFTISACSFMGFKQFRTF 167 (500)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~-D~-~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 167 (500)
. ...+.++++.+ +||++|. +. +.++...-+++.|+|.+.+..=
T Consensus 111 ~------------~~~v~rFl~~~---------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR-------------- 155 (419)
T COG1519 111 L------------PIAVRRFLRKW---------RPKLLIIMETELWPNLINELKRRGIPLVLVNAR-------------- 155 (419)
T ss_pred c------------hHHHHHHHHhc---------CCCEEEEEeccccHHHHHHHHHcCCCEEEEeee--------------
Confidence 0 23345667777 8888774 44 3335667788999999986210
Q ss_pred hhcCCCCCCCccchhhhhcccccccCCCCCCCCcCCCCcccccCCchhhHHHHHHHHHhccccCcEEEEcChHHhhHHHH
Q 010825 168 KEKGLFPVDDKSCLTKEYLSRLIDWIPGMKDIRIRDLPSFVRSTDSKDIMFNLCVEATENASKASAIIIHTFDALEQQVL 247 (500)
Q Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ns~~~le~~~~ 247 (500)
++... ..+ +.+.-.-.....++.++++..|- .+...|
T Consensus 156 -----LS~rS---------------~~~---------------------y~k~~~~~~~~~~~i~li~aQse--~D~~Rf 192 (419)
T COG1519 156 -----LSDRS---------------FAR---------------------YAKLKFLARLLFKNIDLILAQSE--EDAQRF 192 (419)
T ss_pred -----echhh---------------hHH---------------------HHHHHHHHHHHHHhcceeeecCH--HHHHHH
Confidence 00000 000 00000111122355666666662 223222
Q ss_pred HHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHHH
Q 010825 248 NALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGL 327 (500)
Q Consensus 248 ~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al 327 (500)
+....+++...|-+-..... .+.. ...-..+...+... + -+.+..+|.. -..+.......++
T Consensus 193 ---~~LGa~~v~v~GNlKfd~~~----------~~~~-~~~~~~~r~~l~~~--r-~v~iaaSTH~-GEeei~l~~~~~l 254 (419)
T COG1519 193 ---RSLGAKPVVVTGNLKFDIEP----------PPQL-AAELAALRRQLGGH--R-PVWVAASTHE-GEEEIILDAHQAL 254 (419)
T ss_pred ---HhcCCcceEEecceeecCCC----------Chhh-HHHHHHHHHhcCCC--C-ceEEEecCCC-chHHHHHHHHHHH
Confidence 33333356666665332211 0000 00112233334331 2 2666666632 1233344455555
Q ss_pred HhCC--CCEEEEEcCCCCCCCCCCCchHHHHH---------------hhcCceeeeccch-hHhhccCCc----ceeEee
Q 010825 328 VNSN--HPFLWIIRPDLVTGETADLPAEFEVK---------------AKEKGFIASWCPQ-EEVLNHPAI----GGFFTH 385 (500)
Q Consensus 328 ~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~---------------~~~nv~~~~~~pq-~~lL~~~~~----~~~I~H 385 (500)
.+.. ..+||+=+-.+.-.. -++..++ ...+|.+.+-+-- ..++.-+++ +-++.+
T Consensus 255 ~~~~~~~llIlVPRHpERf~~----v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~ 330 (419)
T COG1519 255 KKQFPNLLLILVPRHPERFKA----VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPI 330 (419)
T ss_pred HhhCCCceEEEecCChhhHHH----HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCC
Confidence 5433 234444222111000 0000000 0124555555442 345555555 335568
Q ss_pred cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChh-HHHHHHHHHH
Q 010825 386 SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKG-KQMRNKASKW 464 (500)
Q Consensus 386 gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~-~~~~~~a~~l 464 (500)
||+| ..|.+++|+|+|.=|+...|.+.++++ ++.|.|+.+ + +++.+.+++..+++|++. ++|.+++.++
T Consensus 331 GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l-~~~ga~~~v-----~---~~~~l~~~v~~l~~~~~~r~~~~~~~~~~ 400 (419)
T COG1519 331 GGHN-PLEPAAFGTPVIFGPYTFNFSDIAERL-LQAGAGLQV-----E---DADLLAKAVELLLADEDKREAYGRAGLEF 400 (419)
T ss_pred CCCC-hhhHHHcCCCEEeCCccccHHHHHHHH-HhcCCeEEE-----C---CHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 9987 689999999999999999999999999 689999999 3 378888888888887652 3444444433
No 89
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.47 E-value=0.00058 Score=68.76 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=76.7
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhC--CCCEEEEEcCCCCCCCCCCCchHHHHH---hh---cCcee-eeccchh---
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNS--NHPFLWIIRPDLVTGETADLPAEFEVK---AK---EKGFI-ASWCPQE--- 371 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~---~nv~~-~~~~pq~--- 371 (500)
.+++..|.... ...+..++++++.. +.++++..++..... .-+.+.+. .. .++.+ .+++++.
T Consensus 202 ~~i~~~Grl~~--~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 275 (388)
T TIGR02149 202 PYILFVGRITR--QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPE----VAEEVRQAVALLDRNRTGIIWINKMLPKEELV 275 (388)
T ss_pred eEEEEEccccc--ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHH----HHHHHHHHHHHhccccCceEEecCCCCHHHHH
Confidence 45666777642 23345555666554 345555444322110 11111111 11 23443 4677753
Q ss_pred HhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 372 ~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
.++..+|+ +|.= |...++.||+++|+|+|+... ......+ +.-+.|..+..++.+..-..+++.++|.+
T Consensus 276 ~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i-~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 276 ELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVV-VDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHh-hCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 57889998 6642 223577999999999998654 3444555 55567888811100011123899999999
Q ss_pred HhCCCh
Q 010825 448 LMGGEK 453 (500)
Q Consensus 448 vl~~~~ 453 (500)
+++|+.
T Consensus 349 l~~~~~ 354 (388)
T TIGR02149 349 LLADPE 354 (388)
T ss_pred HHhCHH
Confidence 998875
No 90
>PLN02275 transferase, transferring glycosyl groups
Probab=98.46 E-value=0.00026 Score=70.98 Aligned_cols=75 Identities=17% Similarity=0.290 Sum_probs=53.5
Q ss_pred cCceeee-ccchhH---hhccCCcceeEe-e-----cC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEee
Q 010825 360 EKGFIAS-WCPQEE---VLNHPAIGGFFT-H-----SG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEII 428 (500)
Q Consensus 360 ~nv~~~~-~~pq~~---lL~~~~~~~~I~-H-----gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 428 (500)
+|+.+.. |+|+.+ +|+.+|+ +|. + -| -+++.||+++|+|+|+... ......+ ++-+.|..+
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv-~~g~~G~lv- 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELV-KDGKNGLLF- 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHc-cCCCCeEEE-
Confidence 4566544 788755 5999999 663 2 12 3479999999999999643 3355555 656689988
Q ss_pred eCCCCCCcCHHHHHHHHHHHh
Q 010825 429 NGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl 449 (500)
+ +++++.++|.+++
T Consensus 358 ----~---~~~~la~~i~~l~ 371 (371)
T PLN02275 358 ----S---SSSELADQLLELL 371 (371)
T ss_pred ----C---CHHHHHHHHHHhC
Confidence 4 5899999998774
No 91
>PLN02949 transferase, transferring glycosyl groups
Probab=98.39 E-value=0.00066 Score=69.75 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=67.0
Q ss_pred hcCceeeeccchh---HhhccCCcceeEe---ecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhh-hc-ceeEeee
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNE-WG-VGLEIIN 429 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~-~G-~g~~~~~ 429 (500)
.++|.+.+++|+. ++|..+++ +|+ +-|+| ++.||+++|+|+|+....+--.+ .+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~e---IV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMD---IVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcce---eeecCCCCcccccC--
Confidence 4678899999865 47888887 663 23444 79999999999999764321001 11010 11 23333
Q ss_pred CCCCCCcCHHHHHHHHHHHhCCC-h-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010825 430 GGDDNRVSRNEVEKQVRELMGGE-K-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 430 ~~~~~~~~~~~l~~~i~~vl~~~-~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
-+.+++.++|.++++++ . .+++.+++++..+++ +.+...+++.+.+.
T Consensus 407 ------~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~F--------S~e~~~~~~~~~i~ 455 (463)
T PLN02949 407 ------TTVEEYADAILEVLRMRETERLEIAAAARKRANRF--------SEQRFNEDFKDAIR 455 (463)
T ss_pred ------CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------CHHHHHHHHHHHHH
Confidence 27899999999999853 2 234555555543333 33455555555443
No 92
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.39 E-value=0.00017 Score=71.91 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=79.3
Q ss_pred CceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh--hcCceeeeccc---hhHh
Q 010825 302 NSVIYVNFGSII---IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA--KEKGFIASWCP---QEEV 373 (500)
Q Consensus 302 ~~vV~vs~Gs~~---~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~nv~~~~~~p---q~~l 373 (500)
++.|+|++=... ....+.+..+++++...+.++++++.... ++... ..+...+.. .+|+.+.+-++ ...+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~~~~-i~~~i~~~~~~~~~v~l~~~l~~~~~l~L 278 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AGSRI-INEAIEEYVNEHPNFRLFKSLGQERYLSL 278 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CCchH-HHHHHHHHhcCCCCEEEECCCChHHHHHH
Confidence 467888875432 33456788899999887666666653221 11000 011111111 35777766544 4678
Q ss_pred hccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 374 LNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 374 L~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
++++++ +|+-++.+- .||.+.|+|.|.+- +.+ .-+ +.|..+.+ -..++++|.+++.++++
T Consensus 279 l~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~--~~g~nvl~------vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 279 LKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR--LRADSVID------VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCc---hhh--hhcCeEEE------eCCCHHHHHHHHHHHhC
Confidence 999998 998885555 99999999999764 211 111 23433332 13578999999999554
No 93
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.37 E-value=8.6e-05 Score=71.92 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=99.2
Q ss_pred CceEEEeeccccccCHHHHHHHHHHH----HhCCCCEEEEEcCCCCCCCCCCCchHHHHHhh--cCcee---eeccchhH
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGL----VNSNHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFI---ASWCPQEE 372 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~---~~~~pq~~ 372 (500)
+..|.+|+=-..+.. +-++.++.++ +.. ..+.+++..+.... ..+-...++. .|+.+ .+|.+...
T Consensus 204 ~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~-~~~~viyp~H~~~~----v~e~~~~~L~~~~~v~li~pl~~~~f~~ 277 (383)
T COG0381 204 KKYILVTAHRRENVG-EPLEEICEALREIAEEY-PDVIVIYPVHPRPR----VRELVLKRLKNVERVKLIDPLGYLDFHN 277 (383)
T ss_pred CcEEEEEcchhhccc-ccHHHHHHHHHHHHHhC-CCceEEEeCCCChh----hhHHHHHHhCCCCcEEEeCCcchHHHHH
Confidence 457888775554444 4444455544 333 23344443332211 1111112333 24665 67778889
Q ss_pred hhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
++.++-+ ++|-+|. -.-||-..|+|.+++=...++|. ++ + .|.-+.+ ..+.+.|.+++.++++++
T Consensus 278 L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lv-------g~~~~~i~~~~~~ll~~~ 342 (383)
T COG0381 278 LMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILV-------GTDEENILDAATELLEDE 342 (383)
T ss_pred HHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEe-------CccHHHHHHHHHHHhhCh
Confidence 9999887 9998874 46799999999999999999998 34 3 5665555 256799999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 453 KGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 453 ~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+ ..++.+...--..+ |.++.+.++.+.++.
T Consensus 343 ~---~~~~m~~~~npYgd----g~as~rIv~~l~~~~ 372 (383)
T COG0381 343 E---FYERMSNAKNPYGD----GNASERIVEILLNYF 372 (383)
T ss_pred H---HHHHHhcccCCCcC----cchHHHHHHHHHHHh
Confidence 6 66555544444442 335555555444443
No 94
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.34 E-value=0.0015 Score=65.55 Aligned_cols=81 Identities=10% Similarity=0.119 Sum_probs=57.8
Q ss_pred cCceeeeccch-hHhhccCCcceeEe--e--cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCC
Q 010825 360 EKGFIASWCPQ-EEVLNHPAIGGFFT--H--SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDN 434 (500)
Q Consensus 360 ~nv~~~~~~pq-~~lL~~~~~~~~I~--H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 434 (500)
.++.+.++..+ ..+|+.+|+ +|. + |--.++.||+++|+|+|+.... .+...+ +.-..|..+ +
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i-~~~~~g~~~-----~- 321 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELV-QHGVTGALV-----P- 321 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHh-cCCCceEEe-----C-
Confidence 45666665543 578999998 663 2 3456999999999999996643 344445 444567777 4
Q ss_pred CcCHHHHHHHHHHHhCCCh
Q 010825 435 RVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 435 ~~~~~~l~~~i~~vl~~~~ 453 (500)
.-+.+++.++|.++++|+.
T Consensus 322 ~~d~~~la~~i~~l~~~~~ 340 (374)
T TIGR03088 322 PGDAVALARALQPYVSDPA 340 (374)
T ss_pred CCCHHHHHHHHHHHHhCHH
Confidence 3678999999999998765
No 95
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.33 E-value=0.00045 Score=71.50 Aligned_cols=133 Identities=11% Similarity=0.147 Sum_probs=71.7
Q ss_pred ceEEEeecccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHH---HHHhhcCcee-eeccch--hHhhc
Q 010825 303 SVIYVNFGSII-IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFI-ASWCPQ--EEVLN 375 (500)
Q Consensus 303 ~vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~-~~~~pq--~~lL~ 375 (500)
..+++..|... .-+.+.+...+..+...+.+++++ +.+.. . ..+.+ .++.+.++.+ .+|-.. ..+++
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lviv-G~g~~-~----~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~~~ 355 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLL-GTGDP-E----LEEAFRALAARYPGKVGVQIGYDEALAHRIYA 355 (466)
T ss_pred CcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEE-ecCcH-H----HHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHh
Confidence 34667778764 223333333222232335566555 32210 0 11112 2233455543 566333 25789
Q ss_pred cCCcceeEe---ecCch-hHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHh
Q 010825 376 HPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 376 ~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl 449 (500)
.+|+ +|. +-|+| +.+||+++|+|.|+....+ |.-.+...- ...+.|..+ + .-+++++.++|.+++
T Consensus 356 ~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~-~~~~~G~lv-----~-~~d~~~la~~i~~~l 426 (466)
T PRK00654 356 GADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPE-DGEATGFVF-----D-DFNAEDLLRALRRAL 426 (466)
T ss_pred hCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCC-CCCCceEEe-----C-CCCHHHHHHHHHHHH
Confidence 9998 664 33554 8899999999999864421 211111000 112677777 4 357899999999988
Q ss_pred C
Q 010825 450 G 450 (500)
Q Consensus 450 ~ 450 (500)
+
T Consensus 427 ~ 427 (466)
T PRK00654 427 E 427 (466)
T ss_pred H
Confidence 6
No 96
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.33 E-value=0.00039 Score=69.78 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=67.2
Q ss_pred cCceeeecc--ch---hHhhccCCcceeEeec---C-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeC
Q 010825 360 EKGFIASWC--PQ---EEVLNHPAIGGFFTHS---G-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIING 430 (500)
Q Consensus 360 ~nv~~~~~~--pq---~~lL~~~~~~~~I~Hg---G-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~ 430 (500)
.++.+.++. ++ .++++.+++ |+.-+ | -.++.||+++|+|+|+.... .....+ +.-..|...
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i-~~~~~g~~~--- 321 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQI-EDGETGFLV--- 321 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhc-ccCCceEEe---
Confidence 467777776 43 257889998 77543 3 34999999999999986542 233344 444567766
Q ss_pred CCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHH-HHHHhCCCCChHHHHHHHHHHHH
Q 010825 431 GDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRF-AEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 431 ~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~-~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
+ +.+++..+|.++++|++ .++...+-+.. +.+ .-+-+..++++++.+.
T Consensus 322 --~---~~~~~a~~i~~ll~~~~---~~~~~~~~a~~~~~~----~~s~~~~~~~~~~~~~ 370 (372)
T cd03792 322 --D---TVEEAAVRILYLLRDPE---LRRKMGANAREHVRE----NFLITRHLKDYLYLIS 370 (372)
T ss_pred --C---CcHHHHHHHHHHHcCHH---HHHHHHHHHHHHHHH----HcCHHHHHHHHHHHHH
Confidence 3 45678889999998865 33332222222 221 2344556666665544
No 97
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.32 E-value=0.0011 Score=67.15 Aligned_cols=112 Identities=11% Similarity=0.155 Sum_probs=72.7
Q ss_pred hcCceeeeccchh---HhhccCCcceeEee---------cCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhccee
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTH---------SGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGL 425 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~H---------gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~ 425 (500)
.+++.+.+|+|+. ++|..+++ ||.- -|. ++++||+++|+|+|+.... .....+ +.-..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v-~~~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELV-EADKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----Cchhhh-cCCCceE
Confidence 3678899999975 47889998 6642 344 5789999999999996543 233344 4444677
Q ss_pred EeeeCCCCCCcCHHHHHHHHHHHhC-CCh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010825 426 EIINGGDDNRVSRNEVEKQVRELMG-GEK-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 426 ~~~~~~~~~~~~~~~l~~~i~~vl~-~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
.+ + .-+.+++.++|.++++ |++ .+++.+++++ ...+ .-+.+...+++.+.+.
T Consensus 351 lv-----~-~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~---~v~~----~f~~~~~~~~l~~~~~ 404 (406)
T PRK15427 351 LV-----P-ENDAQALAQRLAAFSQLDTDELAPVVKRARE---KVET----DFNQQVINRELASLLQ 404 (406)
T ss_pred Ee-----C-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HHHH----hcCHHHHHHHHHHHHh
Confidence 77 4 2579999999999998 765 1233333332 2222 2344555666655543
No 98
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.30 E-value=0.00011 Score=73.05 Aligned_cols=127 Identities=12% Similarity=0.146 Sum_probs=84.1
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchh---HhhccCCcce
Q 010825 305 IYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQE---EVLNHPAIGG 381 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~---~lL~~~~~~~ 381 (500)
.++..|.... ......++++++..+.+++++-.+. ..+.+.+...+||.+.+++|+. .+|..+++-+
T Consensus 197 ~il~~G~~~~--~K~~~~li~a~~~~~~~l~ivG~g~--------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v 266 (351)
T cd03804 197 YYLSVGRLVP--YKRIDLAIEAFNKLGKRLVVIGDGP--------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARAFL 266 (351)
T ss_pred EEEEEEcCcc--ccChHHHHHHHHHCCCcEEEEECCh--------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCEEE
Confidence 4556677642 2335567777777777766554322 1223333456899999999984 5788999822
Q ss_pred eEeecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 382 FFTHSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 382 ~I~HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
+-+.-|+| ++.||+++|+|+|+....+ ....+ +.-+.|..+ +. -+.+++.++|.++++|+
T Consensus 267 ~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i-~~~~~G~~~-----~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 267 FPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETV-IDGVTGILF-----EE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred ECCcCCCCchHHHHHHcCCCEEEeCCCC----Cccee-eCCCCEEEe-----CC-CCHHHHHHHHHHHHhCc
Confidence 22334443 5789999999999976432 33334 444677777 43 47889999999999987
No 99
>PLN00142 sucrose synthase
Probab=98.28 E-value=0.0016 Score=70.23 Aligned_cols=81 Identities=11% Similarity=0.169 Sum_probs=50.6
Q ss_pred cCceeee----ccchhHhhc----cCCcceeEe---ecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEe
Q 010825 360 EKGFIAS----WCPQEEVLN----HPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 360 ~nv~~~~----~~pq~~lL~----~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 427 (500)
++|.+.+ ..+..+++. .+++ ||. .-|+| ++.||+++|+|+|+... ......+ +.-..|..+
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDV--fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV-~dG~tG~LV 714 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGA--FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEII-VDGVSGFHI 714 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCE--EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHh-cCCCcEEEe
Confidence 4555544 333345554 3455 664 34555 89999999999998543 3444445 443468877
Q ss_pred eeCCCCCCcCHHHHHHHHHHHh----CCCh
Q 010825 428 INGGDDNRVSRNEVEKQVRELM----GGEK 453 (500)
Q Consensus 428 ~~~~~~~~~~~~~l~~~i~~vl----~~~~ 453 (500)
+. -+++++.++|.+++ .|+.
T Consensus 715 -----~P-~D~eaLA~aI~~lLekLl~Dp~ 738 (815)
T PLN00142 715 -----DP-YHGDEAANKIADFFEKCKEDPS 738 (815)
T ss_pred -----CC-CCHHHHHHHHHHHHHHhcCCHH
Confidence 43 46788888887654 5665
No 100
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.28 E-value=6.4e-05 Score=76.16 Aligned_cols=80 Identities=13% Similarity=0.169 Sum_probs=59.8
Q ss_pred hcCceeeeccch-hHhhccCCcceeE--ee--cCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFF--TH--SGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I--~H--gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
..+|.+.+++++ ..++..+++ +| ++ .|.+ .+.||+++|+|+|+.+...+. +.+..|.|..+
T Consensus 279 ~~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~------i~~~~~~g~lv----- 345 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG------IDALPGAELLV----- 345 (397)
T ss_pred CCCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCccccc------ccccCCcceEe-----
Confidence 357889999986 468999998 65 32 4554 699999999999998754321 11234677777
Q ss_pred CCCcCHHHHHHHHHHHhCCCh
Q 010825 433 DNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~ 453 (500)
. -+++++.++|.++++|+.
T Consensus 346 ~--~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 346 A--ADPADFAAAILALLANPA 364 (397)
T ss_pred C--CCHHHHHHHHHHHHcCHH
Confidence 4 578999999999999875
No 101
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.26 E-value=0.0011 Score=68.66 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=104.9
Q ss_pred HHhhHHHHHHHhhhCCCcceecC-CchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEeeccccccCHH
Q 010825 240 DALEQQVLNALSFIFPLQLFTIG-PLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVNFGSIIIMNKQ 318 (500)
Q Consensus 240 ~~le~~~~~~~~~~~p~~~~~vG-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs~Gs~~~~~~~ 318 (500)
..||.++++ ...- ++.+|| |+...... ....++..+-+.-.+++++|-+--||..+-=..
T Consensus 369 fPFE~~~y~---~~gv-~v~yVGHPL~d~i~~---------------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~r 429 (608)
T PRK01021 369 LPFEQNLFK---DSPL-RTVYLGHPLVETISS---------------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILR 429 (608)
T ss_pred CccCHHHHH---hcCC-CeEEECCcHHhhccc---------------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHH
Confidence 346677665 2333 789999 44322110 001122333333333567899999998543344
Q ss_pred HHHHHHHHHH--hC--CCCEEEEEcCCCCCCCCCCCchHHHHHhhc-C---ceeeeccchhHhhccCCcceeEeecCchh
Q 010825 319 QLIEVAMGLV--NS--NHPFLWIIRPDLVTGETADLPAEFEVKAKE-K---GFIASWCPQEEVLNHPAIGGFFTHSGWNS 390 (500)
Q Consensus 319 ~~~~l~~al~--~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-n---v~~~~~~pq~~lL~~~~~~~~I~HgG~~s 390 (500)
.+-.++++.+ .. +.++++...+.. ..+.+.+...+ + +.+..--...++|..||+ .+.-+|- .
T Consensus 430 llPv~l~aa~~~~l~~~l~fvvp~a~~~-------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-a 499 (608)
T PRK01021 430 NLTIQVQAFLASSLASTHQLLVSSANPK-------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-I 499 (608)
T ss_pred HHHHHHHHHHHHHhccCeEEEEecCchh-------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-H
Confidence 4555666665 33 234444322111 01122221211 1 122210012579999998 7877775 5
Q ss_pred HHHHHhcCCceeeC-CcccchhhhHHHhhh-------------hhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh-hH
Q 010825 391 TIESLCAGVPMICW-PFLGDQPTNCRYTCN-------------EWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK-GK 455 (500)
Q Consensus 391 ~~eal~~GvP~v~~-P~~~DQ~~na~~~~~-------------~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~-~~ 455 (500)
+.|+...|+|||++ -...=-...|++++. ...+-.++.+ .+...|++.|.+++ ++|.|++ .+
T Consensus 500 TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllq--gQ~~~tpe~La~~l-~lL~d~~~r~ 576 (608)
T PRK01021 500 VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIG--GKKDFQPEEVAAAL-DILKTSQSKE 576 (608)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcC--CcccCCHHHHHHHH-HHhcCHHHHH
Confidence 68999999999983 222222334555532 1122222200 01368999999997 8888775 34
Q ss_pred HHHHHHHHHHHHHH
Q 010825 456 QMRNKASKWKRFAE 469 (500)
Q Consensus 456 ~~~~~a~~l~~~~~ 469 (500)
++++..+++++.+.
T Consensus 577 ~~~~~l~~lr~~Lg 590 (608)
T PRK01021 577 KQKDACRDLYQAMN 590 (608)
T ss_pred HHHHHHHHHHHHhc
Confidence 67777777777665
No 102
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.25 E-value=4.8e-05 Score=75.06 Aligned_cols=131 Identities=14% Similarity=0.187 Sum_probs=76.7
Q ss_pred CCCceEEEeeccccccC-H---HHHHHHHHHHHhC-CCCEEEEEcCCCCCCCCCCCchHHHHHhh--cCceeeeccch--
Q 010825 300 EPNSVIYVNFGSIIIMN-K---QQLIEVAMGLVNS-NHPFLWIIRPDLVTGETADLPAEFEVKAK--EKGFIASWCPQ-- 370 (500)
Q Consensus 300 ~~~~vV~vs~Gs~~~~~-~---~~~~~l~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~nv~~~~~~pq-- 370 (500)
.+++.|++++=...+.. + ..+..++.++... +.++||.+.+..... ....+... +|+.+..-+++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~------~~i~~~l~~~~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGS------DIIIEKLKKYDNVRLIEPLGYEE 251 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHH------HHHHHHHTT-TTEEEE----HHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHH------HHHHHHhcccCCEEEECCCCHHH
Confidence 45678999995554444 3 3455566666655 667888876332100 11122221 47888666654
Q ss_pred -hHhhccCCcceeEeecCchhHH-HHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHH
Q 010825 371 -EEVLNHPAIGGFFTHSGWNSTI-ESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVREL 448 (500)
Q Consensus 371 -~~lL~~~~~~~~I~HgG~~s~~-eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~v 448 (500)
..+|+++++ +|+-+| ++. ||.++|+|.|.+ -|+...=.-. ..|..+.+ . .+.++|.++|.++
T Consensus 252 ~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r--~~~~nvlv-----~--~~~~~I~~ai~~~ 315 (346)
T PF02350_consen 252 YLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGR--ERGSNVLV-----G--TDPEAIIQAIEKA 315 (346)
T ss_dssp HHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHH--HTTSEEEE-----T--SSHHHHHHHHHHH
T ss_pred HHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHH--hhcceEEe-----C--CCHHHHHHHHHHH
Confidence 578899998 999999 566 999999999998 2222222222 24555556 3 7899999999999
Q ss_pred hCCC
Q 010825 449 MGGE 452 (500)
Q Consensus 449 l~~~ 452 (500)
+.+.
T Consensus 316 l~~~ 319 (346)
T PF02350_consen 316 LSDK 319 (346)
T ss_dssp HH-H
T ss_pred HhCh
Confidence 9874
No 103
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.24 E-value=3.2e-06 Score=69.52 Aligned_cols=116 Identities=16% Similarity=0.117 Sum_probs=76.8
Q ss_pred ceEEEeeccccccC---HHHHHHHHHHHHhCCC-CEEEEEcCCCCCCCCCCCchHHHHHh-hc--Cceeeeccch-hHhh
Q 010825 303 SVIYVNFGSIIIMN---KQQLIEVAMGLVNSNH-PFLWIIRPDLVTGETADLPAEFEVKA-KE--KGFIASWCPQ-EEVL 374 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~---~~~~~~l~~al~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~-~~--nv~~~~~~pq-~~lL 374 (500)
..+|||-||..... .-........+.+.|. +.|..++.+... .++...... .+ .+...+|-|- .+..
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-----~~d~~~~~~k~~gl~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-----FGDPIDLIRKNGGLTIDGYDFSPSLTEDI 78 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-----CCCHHHhhcccCCeEEEEEecCccHHHHH
Confidence 46999999986211 0112335566677776 566777665211 222221111 11 2334777885 6788
Q ss_pred ccCCcceeEeecCchhHHHHHhcCCceeeCCc----ccchhhhHHHhhhhhcceeE
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCAGVPMICWPF----LGDQPTNCRYTCNEWGVGLE 426 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~----~~DQ~~na~~~~~~~G~g~~ 426 (500)
+.+++ ||.|+|.||++|.|..|+|.|+++- -..|-..|..++ +.|.=..
T Consensus 79 ~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~-~egyL~~ 131 (170)
T KOG3349|consen 79 RSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLA-EEGYLYY 131 (170)
T ss_pred hhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHH-hcCcEEE
Confidence 88998 9999999999999999999999996 457999999884 4554433
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.14 E-value=0.014 Score=62.78 Aligned_cols=94 Identities=19% Similarity=0.223 Sum_probs=63.2
Q ss_pred hcCceeeeccch-hHhhccCCcceeEe---ecC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFT---HSG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
.++|.+.+|.++ ..+|..+++ ||. +.| -+++.||+++|+|+|+.... .....+ +.-..|..+ +
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV-~dg~~GlLv-----~ 640 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAV-QEGVTGLTL-----P 640 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHc-cCCCCEEEe-----C
Confidence 367888999876 468999998 664 455 45899999999999997642 333445 444468888 6
Q ss_pred -CCcCHHHHHHHHHHHhCCCh-hHHHHHHHHHH
Q 010825 434 -NRVSRNEVEKQVRELMGGEK-GKQMRNKASKW 464 (500)
Q Consensus 434 -~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l 464 (500)
.+.+.+++.+++.+++.+.. ...+++++++.
T Consensus 641 ~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~ 673 (694)
T PRK15179 641 ADTVTAPDVAEALARIHDMCAADPGIARKAADW 673 (694)
T ss_pred CCCCChHHHHHHHHHHHhChhccHHHHHHHHHH
Confidence 45677777777777765321 01255555443
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.14 E-value=0.0071 Score=60.68 Aligned_cols=110 Identities=15% Similarity=0.064 Sum_probs=66.9
Q ss_pred hcCceeeeccchhH---hhccCCcceeE------eecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEee
Q 010825 359 KEKGFIASWCPQEE---VLNHPAIGGFF------THSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEII 428 (500)
Q Consensus 359 ~~nv~~~~~~pq~~---lL~~~~~~~~I------~HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~ 428 (500)
.+||.+.+++|+.+ +|.++|+.++- +.++. +.+.|++++|+|+|..++ .... +..+.+...
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~-~~~~~~~~~- 323 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVR-RYEDEVVLI- 323 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHH-hhcCcEEEe-
Confidence 36999999998654 68889983321 22333 358999999999998763 2223 333323333
Q ss_pred eCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 429 NGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
. -+.+++.++|.+++.++..+..++ .++..+ .-+-+...+++++.+++.
T Consensus 324 ----~--~d~~~~~~ai~~~l~~~~~~~~~~----~~~~~~-----~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 324 ----A--DDPEEFVAAIEKALLEDGPARERR----RLRLAA-----QNSWDARAAEMLEALQEN 372 (373)
T ss_pred ----C--CCHHHHHHHHHHHHhcCCchHHHH----HHHHHH-----HCCHHHHHHHHHHHHHhc
Confidence 2 279999999999876543111221 111222 245566677777666543
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.09 E-value=0.0024 Score=66.28 Aligned_cols=129 Identities=6% Similarity=0.024 Sum_probs=73.8
Q ss_pred ceEEEeecccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHH---HHHhhcCceeeeccchh---Hhhc
Q 010825 303 SVIYVNFGSII-IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFIASWCPQE---EVLN 375 (500)
Q Consensus 303 ~vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~~pq~---~lL~ 375 (500)
..+++..|... .-+.+.+...+..+.+.+.+++++ +.+. +. ..+.+ .++.+.++.+....+.. .+++
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~-~~----~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~ 364 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGD-PE----LEEALRELAERYPGNVRVIIGYDEALAHLIYA 364 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCC-HH----HHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH
Confidence 34666678775 233344333333343344555544 3221 00 11122 22334566665555543 4888
Q ss_pred cCCcceeEee---cCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhh------cceeEeeeCCCCCCcCHHHHHHHH
Q 010825 376 HPAIGGFFTH---SGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEW------GVGLEIINGGDDNRVSRNEVEKQV 445 (500)
Q Consensus 376 ~~~~~~~I~H---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~------G~g~~~~~~~~~~~~~~~~l~~~i 445 (500)
.+|+ +|.= -|+| +++||+++|+|+|+....+ ....+ +.. +.|..+ + ..+++++.++|
T Consensus 365 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v-~~~~~~~~~~~G~l~-----~-~~d~~~la~~i 431 (473)
T TIGR02095 365 GADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTV-VDGDPEAESGTGFLF-----E-EYDPGALLAAL 431 (473)
T ss_pred hCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceE-ecCCCCCCCCceEEe-----C-CCCHHHHHHHH
Confidence 9998 6642 2444 7899999999999865432 22222 222 677777 4 35789999999
Q ss_pred HHHhC
Q 010825 446 RELMG 450 (500)
Q Consensus 446 ~~vl~ 450 (500)
.+++.
T Consensus 432 ~~~l~ 436 (473)
T TIGR02095 432 SRALR 436 (473)
T ss_pred HHHHH
Confidence 99886
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.08 E-value=0.0012 Score=65.33 Aligned_cols=166 Identities=17% Similarity=0.115 Sum_probs=86.7
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHh---C--CCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeec-cchhHhh
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVN---S--NHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASW-CPQEEVL 374 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~---~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~-~pq~~lL 374 (500)
++++|-+--||..+-=...+-.++++.+. . +.++++......... .-.........++.+.-. -.-.++|
T Consensus 183 ~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~m 258 (373)
T PF02684_consen 183 DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEE----LIEEILAEYPPDVSIVIIEGESYDAM 258 (373)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHH----HHHHHHHhhCCCCeEEEcCCchHHHH
Confidence 46799999999853223333344444432 2 334554443221000 000011111223333222 2345789
Q ss_pred ccCCcceeEeecCchhHHHHHhcCCceeeCC-cccchhhhHHHhhhhhc---ceeEeeeCCC------CCCcCHHHHHHH
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCAGVPMICWP-FLGDQPTNCRYTCNEWG---VGLEIINGGD------DNRVSRNEVEKQ 444 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~~~~~~G---~g~~~~~~~~------~~~~~~~~l~~~ 444 (500)
..+++ .+.-+|- .+.|+...|+|||++= .-.=.+..|++++ +.. +--.+ .+++ +...|++.|.++
T Consensus 259 ~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lv-k~~~isL~Nii-a~~~v~PEliQ~~~~~~~i~~~ 333 (373)
T PF02684_consen 259 AAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLV-KVKYISLPNII-AGREVVPELIQEDATPENIAAE 333 (373)
T ss_pred HhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhh-cCCEeechhhh-cCCCcchhhhcccCCHHHHHHH
Confidence 99998 6666664 6789999999999842 2222344555553 121 11111 1111 358999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCCh
Q 010825 445 VRELMGGEKGKQMRNKASKWKRFAEEATAPDGSS 478 (500)
Q Consensus 445 i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~ 478 (500)
+.++++|.+ .++..+...+.+.+..+.|.++
T Consensus 334 ~~~ll~~~~---~~~~~~~~~~~~~~~~~~~~~~ 364 (373)
T PF02684_consen 334 LLELLENPE---KRKKQKELFREIRQLLGPGASS 364 (373)
T ss_pred HHHHhcCHH---HHHHHHHHHHHHHHhhhhccCC
Confidence 999999986 3434444444444333334443
No 108
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.07 E-value=0.0015 Score=67.80 Aligned_cols=105 Identities=10% Similarity=0.130 Sum_probs=67.9
Q ss_pred hcCceeeeccchhHhhccCCcceeEe---ecCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-
Q 010825 359 KEKGFIASWCPQEEVLNHPAIGGFFT---HSGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD- 433 (500)
Q Consensus 359 ~~nv~~~~~~pq~~lL~~~~~~~~I~---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~- 433 (500)
.++|.+.++.+..++++.+++ +|. .-|+ .++.||+++|+|+|+..... .....+ +.-..|..++.+.+.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI-~~g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFI-EDNKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHc-cCCCCEEEEeCCcccc
Confidence 356788888888899999998 665 3344 58999999999999965421 122334 333456666211101
Q ss_pred CCcC-HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 010825 434 NRVS-RNEVEKQVRELMGGEKGKQMRNKASKWKRFAE 469 (500)
Q Consensus 434 ~~~~-~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 469 (500)
..-+ .++++++|.++++++..++|.+++++.++.+.
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~~fs 485 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAEGFL 485 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhcC
Confidence 1122 78999999999965444456666666555444
No 109
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.05 E-value=0.0011 Score=69.41 Aligned_cols=77 Identities=13% Similarity=0.095 Sum_probs=53.4
Q ss_pred Cceeeeccchh-HhhccCCcceeEee---cC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCC
Q 010825 361 KGFIASWCPQE-EVLNHPAIGGFFTH---SG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNR 435 (500)
Q Consensus 361 nv~~~~~~pq~-~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 435 (500)
++.+.++.++. ++++.+++ ||.= =| ..++.||+++|+|+|+....+.. . + .. |.+-.+ .
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e----~-V-~~-g~nGll-----~-- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNE----F-F-RS-FPNCLT-----Y-- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCc----e-E-ee-cCCeEe-----c--
Confidence 35667777765 59999998 7752 23 45899999999999997664421 1 2 22 222223 1
Q ss_pred cCHHHHHHHHHHHhCCCh
Q 010825 436 VSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 436 ~~~~~l~~~i~~vl~~~~ 453 (500)
-+.+++.++|.+++.++.
T Consensus 666 ~D~EafAeAI~~LLsd~~ 683 (794)
T PLN02501 666 KTSEDFVAKVKEALANEP 683 (794)
T ss_pred CCHHHHHHHHHHHHhCch
Confidence 468999999999999774
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.04 E-value=0.0017 Score=67.52 Aligned_cols=134 Identities=10% Similarity=0.084 Sum_probs=72.0
Q ss_pred ceEEEeecccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHH---HHhhcCceeeeccchh---Hhhc
Q 010825 303 SVIYVNFGSII-IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE---VKAKEKGFIASWCPQE---EVLN 375 (500)
Q Consensus 303 ~vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~nv~~~~~~pq~---~lL~ 375 (500)
..+++..|... .-..+.+...+..+.+.+.+++++-.++. . ..+.+. ++.++|+.+....++. .++.
T Consensus 296 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 369 (476)
T cd03791 296 APLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDP--E----YEEALRELAARYPGRVAVLIGYDEALAHLIYA 369 (476)
T ss_pred CCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCH--H----HHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence 34677777775 22333333333333334445544432211 0 111121 2224577653333432 4788
Q ss_pred cCCcceeEee---cCc-hhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHh
Q 010825 376 HPAIGGFFTH---SGW-NSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 376 ~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl 449 (500)
.+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.....- .+.|.|..+ + ..+++++.++|.+++
T Consensus 370 ~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~-~~~~~G~~~-----~-~~~~~~l~~~i~~~l 440 (476)
T cd03791 370 GADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNED-TGEGTGFVF-----E-GYNADALLAALRRAL 440 (476)
T ss_pred hCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCC-CCCCCeEEe-----C-CCCHHHHHHHHHHHH
Confidence 8998 6642 123 37899999999999865432 211111111 123578888 4 256899999999988
Q ss_pred CC
Q 010825 450 GG 451 (500)
Q Consensus 450 ~~ 451 (500)
+.
T Consensus 441 ~~ 442 (476)
T cd03791 441 AL 442 (476)
T ss_pred HH
Confidence 63
No 111
>PLN02316 synthase/transferase
Probab=97.99 E-value=0.024 Score=62.94 Aligned_cols=118 Identities=7% Similarity=0.020 Sum_probs=66.7
Q ss_pred hcCceeeeccchh---HhhccCCcceeEee---cC-chhHHHHHhcCCceeeCCccc--chhhhH----HHh--hhhhcc
Q 010825 359 KEKGFIASWCPQE---EVLNHPAIGGFFTH---SG-WNSTIESLCAGVPMICWPFLG--DQPTNC----RYT--CNEWGV 423 (500)
Q Consensus 359 ~~nv~~~~~~pq~---~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~na----~~~--~~~~G~ 423 (500)
++++.+....+.. .+++.+|+ |+.- =| -.+.+||+++|+|.|+....+ |.-... .+. ...-+.
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3466665555543 58999998 7743 23 348999999999888754422 221110 000 001246
Q ss_pred eeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 424 GLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 424 g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
|..+ + ..+++.|..+|.+++.+ |......+++..++++...-|-...+++.++..
T Consensus 977 Gflf-----~-~~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY 1031 (1036)
T PLN02316 977 GFSF-----D-GADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELY 1031 (1036)
T ss_pred eEEe-----C-CCCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 7777 3 36889999999999975 222233334444433333444445555554443
No 112
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.74 E-value=0.002 Score=64.88 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=74.2
Q ss_pred hhcCceeeeccchh---HhhccCCcceeEee----cCc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeee
Q 010825 358 AKEKGFIASWCPQE---EVLNHPAIGGFFTH----SGW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIIN 429 (500)
Q Consensus 358 ~~~nv~~~~~~pq~---~lL~~~~~~~~I~H----gG~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~ 429 (500)
...++.+.+++|+. ++|+.+|+ +|.- .|+ .++.||+++|+|+|+.... .+...+ +.-..|..+
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv-~~~~~G~~l-- 325 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFV-LEGITGYHL-- 325 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhc-ccCCceEEE--
Confidence 34678889999864 46999998 6653 343 5778999999999996642 334444 444567755
Q ss_pred CCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHh
Q 010825 430 GGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLL 491 (500)
Q Consensus 430 ~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~ 491 (500)
....+.+++.++|.++++|++ .++..++-++...+ .-+-+..++++++.+..
T Consensus 326 ---~~~~d~~~la~~I~~ll~d~~---~~~~~~~ar~~~~~----~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 326 ---AEPMTSDSIISDINRTLADPE---LTQIAEQAKDFVFS----KYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ---eCCCCHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Confidence 444689999999999999876 33222222222222 23445555666655543
No 113
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.65 E-value=0.00062 Score=55.26 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=78.2
Q ss_pred EEEeeccccccCHHHHHH--HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhc-Cceeeeccch-hHhhccCCcc
Q 010825 305 IYVNFGSIIIMNKQQLIE--VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE-KGFIASWCPQ-EEVLNHPAIG 380 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~--l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-nv~~~~~~pq-~~lL~~~~~~ 380 (500)
+|||.||....-.+.... +..-.+....++|+.++.... .| +.+ .++-.++-+- +.+...+++
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~------kp------vagl~v~~F~~~~kiQsli~darI- 68 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI------KP------VAGLRVYGFDKEEKIQSLIHDARI- 68 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc------cc------ccccEEEeechHHHHHHHhhcceE-
Confidence 799999984211222211 222223334578888886432 11 111 2222444453 456677777
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCccc--------chhhhHHHhhhhhcceeEeeeCCCCCCc--CHHHHHHHHHHHhC
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFLG--------DQPTNCRYTCNEWGVGLEIINGGDDNRV--SRNEVEKQVRELMG 450 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~~--------DQ~~na~~~~~~~G~g~~~~~~~~~~~~--~~~~l~~~i~~vl~ 450 (500)
+|+|+|.||+..++..++|.+++|--. .|-..|..++ +.+.-+.. ...- =.+-+...+.+++.
T Consensus 69 -VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~kla-e~~~vv~~-----spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 69 -VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLA-EINYVVAC-----SPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred -EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHH-hcCceEEE-----cCCchhhHHhHhhhhhhhcC
Confidence 999999999999999999999999632 4788898884 67777777 4211 23445555555554
No 114
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.63 E-value=0.0018 Score=65.76 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=61.5
Q ss_pred cCceeeeccchhH---hhccCCcceeEeecC----chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 360 EKGFIASWCPQEE---VLNHPAIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 360 ~nv~~~~~~pq~~---lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
.+|.+.+|+++.+ ++..+++.+||..+- -++++||+++|+|+|+.. .......+ +..+.|..+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i-~~~~~G~l~----- 358 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIV-DNGGNGLLL----- 358 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHh-cCCCcEEEe-----
Confidence 4688899999764 555443334776553 458999999999999854 34455556 544488888
Q ss_pred CCCcCHHHHHHHHHHHhCCCh
Q 010825 433 DNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~ 453 (500)
...-+.+++.++|.++++|+.
T Consensus 359 ~~~~~~~~la~~I~~ll~~~~ 379 (407)
T cd04946 359 SKDPTPNELVSSLSKFIDNEE 379 (407)
T ss_pred CCCCCHHHHHHHHHHHHhCHH
Confidence 665689999999999999765
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.61 E-value=0.011 Score=59.06 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=67.9
Q ss_pred hcCceeeeccch-hHhhccCCcceeEee--cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCC
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFTH--SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNR 435 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~ 435 (500)
+.++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+ +.-..|..+ + .
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v-~~~~~G~lv-----~-~ 329 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEII-EDGENGYLV-----P-K 329 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHc-ccCCCceEe-----C-C
Confidence 456778887776 468999999444444 33458999999999999864321 123334 444567776 3 3
Q ss_pred cCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHH
Q 010825 436 VSRNEVEKQVRELMGGEK-GKQMRNKASKWKRFAE 469 (500)
Q Consensus 436 ~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~ 469 (500)
-+.+++.++|.++++|+. .+++.+++++.++.+.
T Consensus 330 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 330 GDIEALAEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred CcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 579999999999999875 2345555555544433
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.57 E-value=0.0021 Score=64.87 Aligned_cols=137 Identities=19% Similarity=0.249 Sum_probs=80.1
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh------hcCceeeeccchhH--
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFIASWCPQEE-- 372 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~nv~~~~~~pq~~-- 372 (500)
++.++|.||.......++.+..-.+-+++.+.-.+|....... + ...+.++. ++++.+.++.|+.+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-~-----~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl 356 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-G-----EARLRRRFAAHGVDPDRIIFSPVAPREEHL 356 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-H-----HHHHHHHHHHTTS-GGGEEEEE---HHHHH
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-H-----HHHHHHHHHHcCCChhhEEEcCCCCHHHHH
Confidence 3569999999999999999999999999998888898864421 1 11222221 46788888877654
Q ss_pred -hhccCCcceeE---eecCchhHHHHHhcCCceeeCCcccchhhh-HHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 373 -VLNHPAIGGFF---THSGWNSTIESLCAGVPMICWPFLGDQPTN-CRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 373 -lL~~~~~~~~I---~HgG~~s~~eal~~GvP~v~~P~~~DQ~~n-a~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
.+..+|+ ++ ..+|.+|++|||+.|||+|.+|--.=.-.. |..+ ..+|+.-.+ - -+.++-.+.-.+
T Consensus 357 ~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL-~~lGl~ElI-----A--~s~~eYv~~Av~ 426 (468)
T PF13844_consen 357 RRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASIL-RALGLPELI-----A--DSEEEYVEIAVR 426 (468)
T ss_dssp HHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHH-HHHT-GGGB--------SSHHHHHHHHHH
T ss_pred HHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHH-HHcCCchhc-----C--CCHHHHHHHHHH
Confidence 4456777 54 468999999999999999999943322223 3344 567777666 2 345555555556
Q ss_pred HhCCCh
Q 010825 448 LMGGEK 453 (500)
Q Consensus 448 vl~~~~ 453 (500)
+-+|.+
T Consensus 427 La~D~~ 432 (468)
T PF13844_consen 427 LATDPE 432 (468)
T ss_dssp HHH-HH
T ss_pred HhCCHH
Confidence 777765
No 117
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.55 E-value=0.0021 Score=56.51 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=63.6
Q ss_pred hcCceeeeccc--h-hHhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 359 KEKGFIASWCP--Q-EEVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 359 ~~nv~~~~~~p--q-~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
..++.+.++++ + ..++..+++ +|+. |+..++.||+++|+|+|+ .|...+...+ ...+.|..+
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~----~~~~~~~e~~-~~~~~g~~~---- 140 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIA----SDIGGNNEII-NDGVNGFLF---- 140 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEE----ESSTHHHHHS-GTTTSEEEE----
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceee----ccccCCceee-ccccceEEe----
Confidence 46888899998 3 468899998 7776 567799999999999997 4455666666 566679999
Q ss_pred CCCCcCHHHHHHHHHHHhCCCh
Q 010825 432 DDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+.. +.+++.++|.+++++++
T Consensus 141 -~~~-~~~~l~~~i~~~l~~~~ 160 (172)
T PF00534_consen 141 -DPN-DIEELADAIEKLLNDPE 160 (172)
T ss_dssp -STT-SHHHHHHHHHHHHHHHH
T ss_pred -CCC-CHHHHHHHHHHHHCCHH
Confidence 644 99999999999999865
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.0068 Score=58.91 Aligned_cols=181 Identities=12% Similarity=0.091 Sum_probs=100.5
Q ss_pred hhhhhcCCCCCceEEEeeccccccCHHHHHHHHHHHHh-----CCCCEEEEEcCCCCCCCCCCCchHHHHHh-hcCc-ee
Q 010825 292 CLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVN-----SNHPFLWIIRPDLVTGETADLPAEFEVKA-KEKG-FI 364 (500)
Q Consensus 292 l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~nv-~~ 364 (500)
..+-+....+++++.+-.||..+-=......+.++... .+.+|+.-+.+... +...... ..+. ..
T Consensus 178 ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~--------~~~~~~~~~~~~~~~ 249 (381)
T COG0763 178 AREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY--------RRIIEEALKWEVAGL 249 (381)
T ss_pred HHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH--------HHHHHHHhhccccCc
Confidence 44444333456799999999854333333344444433 24566665543211 1111111 1122 12
Q ss_pred eecc-ch--hHhhccCCcceeEeecCchhHHHHHhcCCceeeCC-cccchhhhHHHhhhhhcceeEee---eCCC-----
Q 010825 365 ASWC-PQ--EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWP-FLGDQPTNCRYTCNEWGVGLEII---NGGD----- 432 (500)
Q Consensus 365 ~~~~-pq--~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P-~~~DQ~~na~~~~~~~G~g~~~~---~~~~----- 432 (500)
.-++ ++ ...+..+|+ .+.-+|- -+.|+..+|+|||+.= .-.=-...|++++. .... .++ .++.
T Consensus 250 ~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yi-sLpNIi~~~~ivPEl 324 (381)
T COG0763 250 SLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYV-SLPNILAGREIVPEL 324 (381)
T ss_pred eEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcc-cchHHhcCCccchHH
Confidence 2222 22 247888888 7766665 4679999999999831 11111223333321 1110 000 0100
Q ss_pred -CCCcCHHHHHHHHHHHhCCCh-hHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 433 -DNRVSRNEVEKQVRELMGGEK-GKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 433 -~~~~~~~~l~~~i~~vl~~~~-~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+...+++.|.+++..++.|+. .+++++...+|.+.++. +++++.+.+.+++.+
T Consensus 325 iq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~----~~~~e~aA~~vl~~~ 379 (381)
T COG0763 325 IQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLRE----DPASEIAAQAVLELL 379 (381)
T ss_pred HhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHh
Confidence 247899999999999999884 35678888888888875 557777777776654
No 119
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.32 E-value=0.0014 Score=64.72 Aligned_cols=110 Identities=19% Similarity=0.352 Sum_probs=78.6
Q ss_pred hcCceeeeccchhHh---hccCCcceeEeec-------Cc------hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhc
Q 010825 359 KEKGFIASWCPQEEV---LNHPAIGGFFTHS-------GW------NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWG 422 (500)
Q Consensus 359 ~~nv~~~~~~pq~~l---L~~~~~~~~I~Hg-------G~------~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G 422 (500)
.+||.+.+|+|+.++ |.. +.+++...- .. +-+.+.+++|+|+|+. ++...+..+ ++.+
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V-~~~~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFI-VENG 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHH-HhCC
Confidence 568999999998765 444 443333211 11 1277789999999984 456777777 7899
Q ss_pred ceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q 010825 423 VGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVN 487 (500)
Q Consensus 423 ~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~ 487 (500)
+|+.+ + +.+++.+++.++. ++..++|++|+++++++++. |.--..++++++.
T Consensus 280 ~G~~v-----~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~ 331 (333)
T PRK09814 280 LGFVV-----D---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIK 331 (333)
T ss_pred ceEEe-----C---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHh
Confidence 99999 5 6678999998754 34345799999999999996 5555555555544
No 120
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.09 E-value=0.48 Score=49.30 Aligned_cols=62 Identities=23% Similarity=0.196 Sum_probs=45.5
Q ss_pred hcCceeeeccch-hHhhccCCcceeEe---ecC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEe
Q 010825 359 KEKGFIASWCPQ-EEVLNHPAIGGFFT---HSG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 359 ~~nv~~~~~~pq-~~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~ 427 (500)
.++|.+.+|..+ ..+|..+++ ||. .-| -+++.||+++|+|+|+... ..+...+ +.-..|..+
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV-~dG~nG~LV 520 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECF-IEGVSGFIL 520 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHc-ccCCcEEEE
Confidence 367888888765 458999999 875 345 4599999999999998654 3445555 455678777
No 121
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.08 E-value=0.0024 Score=53.68 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=66.9
Q ss_pred eEEEeecccc-ccCHHHHHH-HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccch-hHhhccCCcc
Q 010825 304 VIYVNFGSII-IMNKQQLIE-VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQ-EEVLNHPAIG 380 (500)
Q Consensus 304 vV~vs~Gs~~-~~~~~~~~~-l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq-~~lL~~~~~~ 380 (500)
+.++++|+.. ....+.+-. .+..+.+...++-+.+-+.. |+.+.+....|+.+.+|++. .++++.+++.
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~--------~~~l~~~~~~~v~~~g~~~e~~~~l~~~dv~ 74 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG--------PDELKRLRRPNVRFHGFVEELPEILAAADVG 74 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES--------S-HHCCHHHCTEEEE-S-HHHHHHHHC-SEE
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC--------HHHHHHhcCCCEEEcCCHHHHHHHHHhCCEE
Confidence 4566667664 234443333 55556543334444432221 11221112569999999975 4689999995
Q ss_pred eeEee--cC-chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCC
Q 010825 381 GFFTH--SG-WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGG 451 (500)
Q Consensus 381 ~~I~H--gG-~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~ 451 (500)
+..+. .| -+++.|++++|+|+|+.+. ...... +..+.|..+ . -+++++.++|.++++|
T Consensus 75 l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~-~~~~~~~~~-----~--~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 75 LIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIV-EEDGCGVLV-----A--NDPEELAEAIERLLND 135 (135)
T ss_dssp EE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE------T--T-HHHHHHHHHHHHH-
T ss_pred EEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhhe-eecCCeEEE-----C--CCHHHHHHHHHHHhcC
Confidence 54432 23 4899999999999999765 122233 445677665 2 3889999999999875
No 122
>PLN02939 transferase, transferring glycosyl groups
Probab=97.02 E-value=0.78 Score=50.64 Aligned_cols=83 Identities=8% Similarity=0.006 Sum_probs=54.4
Q ss_pred cCceeeeccchh---HhhccCCcceeEee---cC-chhHHHHHhcCCceeeCCccc--chhhh--HHHhhhhhcceeEee
Q 010825 360 EKGFIASWCPQE---EVLNHPAIGGFFTH---SG-WNSTIESLCAGVPMICWPFLG--DQPTN--CRYTCNEWGVGLEII 428 (500)
Q Consensus 360 ~nv~~~~~~pq~---~lL~~~~~~~~I~H---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~n--a~~~~~~~G~g~~~~ 428 (500)
++|.+..+.+.. .+++.+|+ ||.- =| -.+++||+++|+|.|+....+ |.-.. ...+.+.-+.|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf- 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF- 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe-
Confidence 568888888864 58999998 7753 22 348999999999998865533 21111 11111123566666
Q ss_pred eCCCCCCcCHHHHHHHHHHHhC
Q 010825 429 NGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
+. .++++|.++|.+++.
T Consensus 914 ----~~-~D~eaLa~AL~rAL~ 930 (977)
T PLN02939 914 ----LT-PDEQGLNSALERAFN 930 (977)
T ss_pred ----cC-CCHHHHHHHHHHHHH
Confidence 32 588899999988775
No 123
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.76 E-value=0.52 Score=44.58 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=67.2
Q ss_pred CCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc--hhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHH-HHHH
Q 010825 19 PSQSHIKAMLKLAKLLHHKGFHITFVNTEFN--HRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMY-SLCE 95 (500)
Q Consensus 19 ~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~-~~~~ 95 (500)
+-.-|+..+..|-++|.++||+|.+-+-+.. .+.+... ++.+..+.+- ....+. .++.
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~y----------gf~~~~Igk~---------g~~tl~~Kl~~ 68 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLY----------GFPYKSIGKH---------GGVTLKEKLLE 68 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHh----------CCCeEeeccc---------CCccHHHHHHH
Confidence 3445888999999999999999988775432 2333332 5666555321 111222 2222
Q ss_pred HHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccc
Q 010825 96 SIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTIS 154 (500)
Q Consensus 96 ~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (500)
...+. -.|.+++.+. +||+.+. -.++.+..+|--+|+|.+.+.-+.
T Consensus 69 ~~eR~---~~L~ki~~~~---------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 69 SAERV---YKLSKIIAEF---------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred HHHHH---HHHHHHHhhc---------CCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 22222 2344555554 9999999 567789999999999999986443
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.75 E-value=0.15 Score=46.41 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=36.7
Q ss_pred hcCceeeeccch----hHhhccCCcceeEeecC----chhHHHHHhcCCceeeCCcccch
Q 010825 359 KEKGFIASWCPQ----EEVLNHPAIGGFFTHSG----WNSTIESLCAGVPMICWPFLGDQ 410 (500)
Q Consensus 359 ~~nv~~~~~~pq----~~lL~~~~~~~~I~HgG----~~s~~eal~~GvP~v~~P~~~DQ 410 (500)
..|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+.+
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 357778887632 234445888 887776 78999999999999998765443
No 125
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.59 E-value=0.058 Score=56.01 Aligned_cols=82 Identities=11% Similarity=0.162 Sum_probs=60.0
Q ss_pred hcCceeeeccchhHhhccCCcceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhh------cceeEee
Q 010825 359 KEKGFIASWCPQEEVLNHPAIGGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEW------GVGLEII 428 (500)
Q Consensus 359 ~~nv~~~~~~pq~~lL~~~~~~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~------G~g~~~~ 428 (500)
.++|.+.+...-.++|+.+++ +|.- |--+++.||+++|+|+|+. |.......+ +.. ..|..+
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv-~~~~~~~~g~~G~lv- 424 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELI-EGADDEALGPAGEVV- 424 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHh-cCCcccccCCceEEE-
Confidence 467888886666789999998 6543 3346899999999999994 444444444 432 267666
Q ss_pred eCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 429 NGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 429 ~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
+ ..+.+++.++|.++++|+.
T Consensus 425 ----~-~~d~~~la~ai~~ll~~~~ 444 (475)
T cd03813 425 ----P-PADPEALARAILRLLKDPE 444 (475)
T ss_pred ----C-CCCHHHHHHHHHHHhcCHH
Confidence 3 3678999999999999876
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=96.48 E-value=1.2 Score=45.29 Aligned_cols=178 Identities=10% Similarity=0.182 Sum_probs=99.8
Q ss_pred hhhhhcCCCCCceEEEeecccccc------C----HHHHHHHHHHHHhCCCCEEEEEcCCCCCC-CCCCC--chHHHHHh
Q 010825 292 CLQWLDSKEPNSVIYVNFGSIIIM------N----KQQLIEVAMGLVNSNHPFLWIIRPDLVTG-ETADL--PAEFEVKA 358 (500)
Q Consensus 292 l~~~l~~~~~~~vV~vs~Gs~~~~------~----~~~~~~l~~al~~~~~~~v~~~~~~~~~~-~~~~~--~~~~~~~~ 358 (500)
+..|+...+.+++|-+|.-.-... . ...+..+++.+...+.++++.--...... ..... ...+.+.+
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~ 303 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHV 303 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhc
Confidence 344554333456787776543211 1 12344455555556888776643211100 00000 01222222
Q ss_pred h--cCcee-e-eccch--hHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeE-eeeCC
Q 010825 359 K--EKGFI-A-SWCPQ--EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLE-IINGG 431 (500)
Q Consensus 359 ~--~nv~~-~-~~~pq--~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~-~~~~~ 431 (500)
+ .++.+ . .+-|. ..++.++++ +|..==+ ++.-|+..|+|.+.+++ | +-....+ +.+|.... +
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~RlH-a~I~a~~~gvP~i~i~Y--~-~K~~~~~-~~lg~~~~~~---- 372 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGTRLH-SAIISMNFGTPAIAINY--E-HKSAGIM-QQLGLPEMAI---- 372 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEecch-HHHHHHHcCCCEEEeee--h-HHHHHHH-HHcCCccEEe----
Confidence 2 22333 2 23343 378899887 8853322 45568899999999998 3 4444444 56787765 5
Q ss_pred CC-CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 432 DD-NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 432 ~~-~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+ ..++.++|.+.+.++++|.+ +++++.++--+.+++ ...+.+.++++.+
T Consensus 373 -~~~~l~~~~Li~~v~~~~~~r~--~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 373 -DIRHLLDGSLQAMVADTLGQLP--ALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred -chhhCCHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 5 68999999999999999866 466665555555553 1245566666654
No 127
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.43 E-value=0.051 Score=45.75 Aligned_cols=103 Identities=13% Similarity=0.249 Sum_probs=62.9
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHH
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMY 91 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 91 (500)
||++++.....| ...+++.|.++||+|++++.....+.... ..++.+..++.. .. ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~--~k--------~~~ 58 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSP--RK--------SPL 58 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCC--CC--------ccH
Confidence 577777666555 56889999999999999999554322221 236777776422 11 011
Q ss_pred HHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc---hHHHHHHHhC-CCeEEEec
Q 010825 92 SLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP---FTVTAAQQLG-LPIVLLFT 152 (500)
Q Consensus 92 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~---~~~~~A~~lg-iP~v~~~~ 152 (500)
..+. + . .+.+++++. +||+|.+-.... .+..++...| +|++....
T Consensus 59 ~~~~-----~-~-~l~k~ik~~---------~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 59 NYIK-----Y-F-RLRKIIKKE---------KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHHH-----H-H-HHHHHhccC---------CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 1222 1 1 223445543 999998887654 2445667888 89987543
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.34 E-value=0.38 Score=47.04 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=76.7
Q ss_pred CCceEEEeeccc-c--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeee--ccch-hHhh
Q 010825 301 PNSVIYVNFGSI-I--IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIAS--WCPQ-EEVL 374 (500)
Q Consensus 301 ~~~vV~vs~Gs~-~--~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~~pq-~~lL 374 (500)
+++.|.+..|+. . ..+.+.+.++++.+.+.+.++|+..+++.... ..+...+..+ +..+.+ -++| .+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~----~~~~i~~~~~-~~~l~g~~sL~el~ali 252 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQ----RAERIAEALP-GAVVLPKMSLAEVAALL 252 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH----HHHHHHhhCC-CCeecCCCCHHHHHHHH
Confidence 345666666653 2 56778888888888766677766544321000 0111211112 223333 2444 4699
Q ss_pred ccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHh
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl 449 (500)
+++++ ||+. -.|.++=|.+.|+|+|.+ ++ +.+..+. .=+|-...+.....-..++++++.++|.++|
T Consensus 253 ~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~-~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 253 AGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRT-GGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhc-ccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 99998 8864 567888999999999984 21 1112221 1122222221111125899999999998765
No 129
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.27 E-value=0.004 Score=48.71 Aligned_cols=56 Identities=13% Similarity=0.135 Sum_probs=45.3
Q ss_pred hhhhhhhhhcCCCCCceEEEeecccccc---CH--HHHHHHHHHHHhCCCCEEEEEcCCCC
Q 010825 288 EETECLQWLDSKEPNSVIYVNFGSIIIM---NK--QQLIEVAMGLVNSNHPFLWIIRPDLV 343 (500)
Q Consensus 288 ~~~~l~~~l~~~~~~~vV~vs~Gs~~~~---~~--~~~~~l~~al~~~~~~~v~~~~~~~~ 343 (500)
....+..|+...+.++.|+||+||.... .. ..+..++++++.++..+|..+.....
T Consensus 26 G~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 26 GPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 3445677999888899999999998643 22 47888999999999999999986654
No 130
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.09 E-value=1.9 Score=43.71 Aligned_cols=114 Identities=9% Similarity=-0.045 Sum_probs=66.0
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCCCCE-EEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccc-h---hHhhccCCc
Q 010825 305 IYVNFGSIIIMNKQQLIEVAMGLVNSNHPF-LWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCP-Q---EEVLNHPAI 379 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~l~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-q---~~lL~~~~~ 379 (500)
+++..|.........+..+++|+...+.++ ++.++.+.. . ...++...++.. + .+++..+|+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~--------~-----~~~~v~~~g~~~~~~~l~~~y~~aDv 309 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP--------F-----TAGNVVNHGFETDKRKLMSALNQMDA 309 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc--------c-----cccceEEecCcCCHHHHHHHHHhCCE
Confidence 444455432222233466788887765544 444553211 0 023555555543 2 346777888
Q ss_pred ceeEee----cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHH
Q 010825 380 GGFFTH----SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQV 445 (500)
Q Consensus 380 ~~~I~H----gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i 445 (500)
||.- |--.++.||+++|+|+|+....+ ....+ + .+.|..+ +. -+.++|++++
T Consensus 310 --fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~-~~~G~lv-----~~-~d~~~La~~~ 365 (405)
T PRK10125 310 --LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-Q-KSGGKTV-----SE-EEVLQLAQLS 365 (405)
T ss_pred --EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-e-CCcEEEE-----CC-CCHHHHHhcc
Confidence 7753 23458999999999999987654 22233 3 3578888 42 4677777654
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.08 E-value=0.09 Score=51.47 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=56.6
Q ss_pred hhcCceee---eccchh---HhhccCCcceeEee---cCc-hhHHHHHhcCCceeeCCc------ccch------hhhHH
Q 010825 358 AKEKGFIA---SWCPQE---EVLNHPAIGGFFTH---SGW-NSTIESLCAGVPMICWPF------LGDQ------PTNCR 415 (500)
Q Consensus 358 ~~~nv~~~---~~~pq~---~lL~~~~~~~~I~H---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~na~ 415 (500)
.++++.+. +++++. ++++.+++ ||.- -|+ .++.||+++|+|+|+.-. .+|+ .+++.
T Consensus 199 l~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~ 276 (335)
T PHA01633 199 VPANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVE 276 (335)
T ss_pred CCCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHH
Confidence 35678877 455643 67889998 7753 344 478999999999998533 2232 22232
Q ss_pred Hhhh-hhcceeEeeeCCCCCCcCHHHHHHHHHHHhCC
Q 010825 416 YTCN-EWGVGLEIINGGDDNRVSRNEVEKQVRELMGG 451 (500)
Q Consensus 416 ~~~~-~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~ 451 (500)
..++ ..|.|..+ + ..+++++.++|.+++..
T Consensus 277 ~~~~~~~g~g~~~-----~-~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 277 EYYDKEHGQKWKI-----H-KFQIEDMANAIILAFEL 307 (335)
T ss_pred HhcCcccCceeee-----c-CCCHHHHHHHHHHHHhc
Confidence 2211 34566666 3 48999999999999653
No 132
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.23 Score=50.82 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=84.0
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHH--hhcCceeeeccc---hhHhhc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVK--AKEKGFIASWCP---QEEVLN 375 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~nv~~~~~~p---q~~lL~ 375 (500)
++.+||+||+-.....++.+..-+.-++..+.-++|..+++..++....+.+-+.+. ..++.++.+-.| |.+-+.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~ 507 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYG 507 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhc
Confidence 457999999999999999999988888889999999998753221000011111110 125666666655 455666
Q ss_pred cCCcceeEe---ecCchhHHHHHhcCCceeeCCcccchhh--hHHHhhhhhcceeEe
Q 010825 376 HPAIGGFFT---HSGWNSTIESLCAGVPMICWPFLGDQPT--NCRYTCNEWGVGLEI 427 (500)
Q Consensus 376 ~~~~~~~I~---HgG~~s~~eal~~GvP~v~~P~~~DQ~~--na~~~~~~~G~g~~~ 427 (500)
-+|+ |+- =||+.|..|+|+.|||+|..+ ++|+. |+.-++..+|+-..+
T Consensus 508 iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~v 560 (620)
T COG3914 508 IADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELV 560 (620)
T ss_pred hhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhh
Confidence 7777 764 699999999999999999876 67764 444444555665555
No 133
>PRK14098 glycogen synthase; Provisional
Probab=95.67 E-value=0.23 Score=51.71 Aligned_cols=132 Identities=9% Similarity=0.028 Sum_probs=74.0
Q ss_pred eEEEeecccc-ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHH---HHHhhcCceeeeccchh---Hhhcc
Q 010825 304 VIYVNFGSII-IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEF---EVKAKEKGFIASWCPQE---EVLNH 376 (500)
Q Consensus 304 vV~vs~Gs~~-~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~~nv~~~~~~pq~---~lL~~ 376 (500)
.+++..|... .-..+.+...+..+...+.+++++ +.+... ..+.+ .++.+.++.+..+++.. .+++.
T Consensus 308 ~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lviv-G~G~~~-----~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a~ 381 (489)
T PRK14098 308 PLVGVIINFDDFQGAELLAESLEKLVELDIQLVIC-GSGDKE-----YEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIAG 381 (489)
T ss_pred CEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEE-eCCCHH-----HHHHHHHHHHHCCCCEEEEEecCHHHHHHHHHh
Confidence 4666667764 223333333333333334455444 332100 01122 23345688888888864 58899
Q ss_pred CCcceeEeec---Cc-hhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 377 PAIGGFFTHS---GW-NSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 377 ~~~~~~I~Hg---G~-~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
+|+ |+.-+ |+ .+.+||+++|+|.|+....+-........ +.-+.|..+ + ..+++++.++|.++++
T Consensus 382 aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~-~~~~~G~l~-----~-~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 382 LDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVS-EDKGSGFIF-----H-DYTPEALVAKLGEALA 450 (489)
T ss_pred CCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCC-CCCCceeEe-----C-CCCHHHHHHHHHHHHH
Confidence 998 77533 32 37789999999888866532111110111 223567777 3 3678999999998763
No 134
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.49 E-value=0.18 Score=51.74 Aligned_cols=119 Identities=21% Similarity=0.318 Sum_probs=80.3
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHh------hcCceeeeccchhHhh
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKA------KEKGFIASWCPQEEVL 374 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~------~~nv~~~~~~pq~~lL 374 (500)
++.+||.+|--....++..+..-++-+++.+.-++|.++.+-.-+ ..|.... +++|.+.+-+...+-.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge------~rf~ty~~~~Gl~p~riifs~va~k~eHv 830 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE------QRFRTYAEQLGLEPDRIIFSPVAAKEEHV 830 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch------HHHHHHHHHhCCCccceeeccccchHHHH
Confidence 346899999888889999999999999999999999998654321 1232211 4566665555544333
Q ss_pred ccCCc-----ceeEeecCchhHHHHHhcCCceeeCCcccchhhhH-HHhhhhhcceeEe
Q 010825 375 NHPAI-----GGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNC-RYTCNEWGVGLEI 427 (500)
Q Consensus 375 ~~~~~-----~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na-~~~~~~~G~g~~~ 427 (500)
+...+ .-+.+ -|..|.++.|+.|+|||.+|.-.---..| ..+ -..|+|..+
T Consensus 831 rr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll-~~~Gl~hli 887 (966)
T KOG4626|consen 831 RRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLL-TALGLGHLI 887 (966)
T ss_pred HhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHH-HHcccHHHH
Confidence 32221 11333 47889999999999999999754333333 333 458999877
No 135
>PHA01630 putative group 1 glycosyl transferase
Probab=95.30 E-value=0.44 Score=46.87 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=61.8
Q ss_pred eccchh---HhhccCCcceeEe---ecC-chhHHHHHhcCCceeeCCccc--chh---hhHHHhhhh-----------hc
Q 010825 366 SWCPQE---EVLNHPAIGGFFT---HSG-WNSTIESLCAGVPMICWPFLG--DQP---TNCRYTCNE-----------WG 422 (500)
Q Consensus 366 ~~~pq~---~lL~~~~~~~~I~---HgG-~~s~~eal~~GvP~v~~P~~~--DQ~---~na~~~~~~-----------~G 422 (500)
.++|+. .+++.+|+ ||. ..| -.++.||+++|+|+|+.-..+ |.- .|+..+ +. .+
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv-~~~~~~~~~~~~~~~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWI-KSGRKPKLWYTNPIH 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEe-eecccccccccCCcc
Confidence 346654 47889998 552 333 458999999999999976432 211 111111 10 12
Q ss_pred ceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010825 423 VGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 423 ~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
+|..+ + .+.+++.+++.+++.|.+-+..+++.+.-+....+ .-+-+..++++++.+.
T Consensus 273 ~G~~v-----~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~----~fs~~~ia~k~~~l~~ 329 (331)
T PHA01630 273 VGYFL-----D--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYRE----NYSYNAIAKMWEKILE 329 (331)
T ss_pred ccccc-----C--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHh
Confidence 34433 2 36788888888999874111244444443333333 3454555566665543
No 136
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.14 E-value=3.7 Score=40.51 Aligned_cols=105 Identities=8% Similarity=0.055 Sum_probs=68.6
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCee-EEeCCCCCCCCCCCCCccc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFR-FEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~ 88 (500)
||+++-..+.|++.-...+.+.|.++ +-+|++++.+.+.+.++.. |.++ +..++......
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~vd~vi~~~~~~~~~-------- 63 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSEN---------PDINALYGLDRKKAKA-------- 63 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcC---------CCccEEEEeChhhhcc--------
Confidence 58999999999999999999999986 8999999998887766553 2332 23332110000
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
... .+... .+++..+... +||++|.-.....+..++...|.|.-+
T Consensus 64 ~~~----~~~~~------~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 64 GER----KLANQ------FHLIKVLRAN------RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred hHH----HHHHH------HHHHHHHHhC------CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 000 01111 1344555444 999999655445577788888999765
No 137
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.06 E-value=0.23 Score=38.41 Aligned_cols=82 Identities=13% Similarity=0.125 Sum_probs=54.8
Q ss_pred ecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhc-ceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHH
Q 010825 385 HSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWG-VGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASK 463 (500)
Q Consensus 385 HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~ 463 (500)
+|-..-+.|++++|+|+|.-+. ......+ + .| -++.. -+.+++.++|..+++|+. ..++-+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~-~~~~~~~~--------~~~~el~~~i~~ll~~~~--~~~~ia~~ 72 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-E-DGEHIITY--------NDPEELAEKIEYLLENPE--ERRRIAKN 72 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-C-CCCeEEEE--------CCHHHHHHHHHHHHCCHH--HHHHHHHH
Confidence 4556689999999999998654 3333333 2 24 34444 289999999999999886 34444555
Q ss_pred HHHHHHHHhCCCCChHHHHHHHH
Q 010825 464 WKRFAEEATAPDGSSATNLEKLV 486 (500)
Q Consensus 464 l~~~~~~~~~~~g~~~~~~~~l~ 486 (500)
-.+..++ .-+....+++++
T Consensus 73 a~~~v~~----~~t~~~~~~~il 91 (92)
T PF13524_consen 73 ARERVLK----RHTWEHRAEQIL 91 (92)
T ss_pred HHHHHHH----hCCHHHHHHHHH
Confidence 5555554 466666666665
No 138
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=95.05 E-value=0.082 Score=47.40 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=30.8
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
||||+.---+. +-.-+..|+++|.+.||+|+++.|...+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 57777765555 566788999999888899999999876543
No 139
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.04 E-value=0.087 Score=44.97 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHHHHHHHHHhccch
Q 010825 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVMLH 104 (500)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (500)
.-+..|+++|.++||+|+++++......-+. ...++.+..++ ++.. ...... +.. ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~--------~~~~~~~~~~~--~~~~---~~~~~~----~~~------~~ 61 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEE--------EEDGVRVHRLP--LPRR---PWPLRL----LRF------LR 61 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SE--------EETTEEEEEE----S-S---SSGGGH----CCH------HH
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCccccc--------ccCCceEEecc--CCcc---chhhhh----HHH------HH
Confidence 3468899999999999999997654432111 12256666665 1111 000000 001 11
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHH-HhCCCeEEEec
Q 010825 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTVTAAQ-QLGLPIVLLFT 152 (500)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~-~~~~~A~-~lgiP~v~~~~ 152 (500)
.+..++ ..... +||+|.+..... ....+++ ..++|+|....
T Consensus 62 ~~~~~l-~~~~~------~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 62 RLRRLL-AARRE------RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHHHHC-HHCT---------SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHHHH-hhhcc------CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 222333 11333 999999887432 2333444 88999998654
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=93.65 E-value=4.4 Score=39.37 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=42.4
Q ss_pred chhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhh---hHHHhhhhhcceeEe
Q 010825 369 PQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPT---NCRYTCNEWGVGLEI 427 (500)
Q Consensus 369 pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~---na~~~~~~~G~g~~~ 427 (500)
|...+|..++. .|||---.+=+.||+..|+|+.++|.-.-... ....+ ++.|+-...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~~~~r~~r~~~~L-~~~g~~r~~ 280 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPGRSGRFRRFHQSL-EERGAVRPF 280 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCCcchHHHHHHHHH-HHCCCEEEC
Confidence 67789999887 67777778889999999999999998762122 23344 346777666
No 141
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.50 E-value=1.7 Score=44.72 Aligned_cols=104 Identities=11% Similarity=0.105 Sum_probs=68.8
Q ss_pred eeccchh---HhhccCCcceeEe---ecCch-hHHHHHhcCCc----eeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 365 ASWCPQE---EVLNHPAIGGFFT---HSGWN-STIESLCAGVP----MICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 365 ~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
.+.+|+. +++..+|+ |+. +=|+| ++.||+++|+| +|+--+.+ .+..+ +-|+.+ +
T Consensus 341 ~~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G----~~~~l----~~gllV-----n 405 (456)
T TIGR02400 341 NRSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG----AAQEL----NGALLV-----N 405 (456)
T ss_pred cCCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCC----ChHHh----CCcEEE-----C
Confidence 3445654 46888898 664 44755 78899999999 65543332 22222 346666 4
Q ss_pred CCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q 010825 434 NRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVL 490 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~ 490 (500)
..+.++++++|.++++.+. ++-+++.+++++.+.+ -+...-++++++.+.
T Consensus 406 -P~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 406 -PYDIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred -CCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 3689999999999998653 1345556666666554 566777888887763
No 142
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=91.50 E-value=1.9 Score=40.36 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
+|||||+.---+. |---+.+|+++|.+.| +|+++.|...+.
T Consensus 4 ~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~S 44 (257)
T PRK13932 4 KKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHS 44 (257)
T ss_pred CCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCC
Confidence 4688887764433 4456888999998888 799999977654
No 143
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=91.36 E-value=1.9 Score=37.59 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=52.6
Q ss_pred hCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC-ccccHHHHHHHHHHhccchHHHHHHHHhh
Q 010825 36 HKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS-TTQDMYSLCESIMNNVMLHPFLDLLAKLN 114 (500)
Q Consensus 36 ~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~l~ 114 (500)
++||+|++++........ ++++...+...-.... ... ...+ ++...... ..+.+.+.+|+
T Consensus 1 q~gh~v~fl~~~~~~~~~------------~GV~~~~y~~~~~~~~-~~~~~~~~----~e~~~~rg--~av~~a~~~L~ 61 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP------------PGVRVVRYRPPRGPTP-GTHPYVRD----FEAAVLRG--QAVARAARQLR 61 (171)
T ss_pred CCCCEEEEEecCCCCCCC------------CCcEEEEeCCCCCCCC-CCCccccc----HHHHHHHH--HHHHHHHHHHH
Confidence 479999999954433221 3677777743111110 011 1112 22222221 22233344454
Q ss_pred cCCCCCCCCeeEEEEcCCcchHHHHHHHh-CCCeEEEe
Q 010825 115 DSSNSVNPAVSCIISDGFLPFTVTAAQQL-GLPIVLLF 151 (500)
Q Consensus 115 ~~~~~~~~~pDlvI~D~~~~~~~~~A~~l-giP~v~~~ 151 (500)
++ |-.||+||..+-.-.++-+-+.+ ++|.+.+.
T Consensus 62 ~~----Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 62 AQ----GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred Hc----CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 43 45889999997655788888999 89999873
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.23 E-value=0.9 Score=39.30 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=23.7
Q ss_pred CcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 20 SQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
..|=-.-+..|+++|+++||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 345677889999999999999999987654
No 145
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=90.74 E-value=1.3 Score=38.83 Aligned_cols=114 Identities=19% Similarity=0.160 Sum_probs=59.0
Q ss_pred EcCCCcCcHHHHHHHHHHH-HhC-CCEEEEEeCCcc--hhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHH
Q 010825 16 IPSPSQSHIKAMLKLAKLL-HHK-GFHITFVNTEFN--HRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMY 91 (500)
Q Consensus 16 ~~~~~~GH~~p~l~La~~L-~~r-GH~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 91 (500)
+..++.||+.=|+.|.+.+ .++ .++..+++..+. .+.+.+..... .....+..+|...... .....
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~----~~~~~~~~~~r~r~v~------q~~~~ 72 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSS----SKRHKILEIPRAREVG------QSYLT 72 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhc----cccceeeccceEEEec------hhhHh
Confidence 3447889999999999999 444 455555554332 22222221000 0011233333211111 11111
Q ss_pred HHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHh------CCCeEEEe
Q 010825 92 SLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQL------GLPIVLLF 151 (500)
Q Consensus 92 ~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~l------giP~v~~~ 151 (500)
..+..+... -..+.-+.+. +||+||+..... ....+|..+ |.++|.+-
T Consensus 73 ~~~~~l~~~--~~~~~il~r~----------rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIE 128 (170)
T PF08660_consen 73 SIFTTLRAF--LQSLRILRRE----------RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIE 128 (170)
T ss_pred hHHHHHHHH--HHHHHHHHHh----------CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEE
Confidence 122222111 1222333333 999999999665 466778888 99999873
No 146
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=90.43 E-value=3.1 Score=38.91 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=26.7
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
||||+.---+. |---+.+|+++|.+ +|+|+++.|...+.
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 45666543333 33447888999965 68999999977654
No 147
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=89.81 E-value=6.3 Score=40.29 Aligned_cols=138 Identities=9% Similarity=0.100 Sum_probs=85.8
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCC-CCEEEEEcCCCCCCCCCCCchHHH--HHhhcCcee-eeccc-h-hHhh
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSN-HPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFI-ASWCP-Q-EEVL 374 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~-~~~~p-q-~~lL 374 (500)
++.++++| +...++.+....++.+ ..|=....+.. .+.+. ++. +|+.+ .++.+ + .+++
T Consensus 282 ~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te~--------s~kL~~L~~y-~nvvly~~~~~~~l~~ly 345 (438)
T TIGR02919 282 RKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTEM--------SSKLMSLDKY-DNVKLYPNITTQKIQELY 345 (438)
T ss_pred cccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCcc--------cHHHHHHHhc-CCcEEECCcChHHHHHHH
Confidence 45577776 2555555555555543 34433333321 12221 233 56655 77677 3 5799
Q ss_pred ccCCcceeEeecC--chhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 375 NHPAIGGFFTHSG--WNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 375 ~~~~~~~~I~HgG--~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
..|++-+-|+||+ ..++.||+.+|+|++.+=...... ..+ .. |... ..-+.+++.++|.++|.++
T Consensus 346 ~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i-~~---g~l~------~~~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 346 QTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFI-AS---ENIF------EHNEVDQLISKLKDLLNDP 412 (438)
T ss_pred HhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccc-cC---Ccee------cCCCHHHHHHHHHHHhcCH
Confidence 9999999999977 569999999999999865432211 222 22 3334 2356899999999999988
Q ss_pred hhHHHHHHHHHHHHHHH
Q 010825 453 KGKQMRNKASKWKRFAE 469 (500)
Q Consensus 453 ~~~~~~~~a~~l~~~~~ 469 (500)
+ .+++++..-++.+.
T Consensus 413 ~--~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 413 N--QFRELLEQQREHAN 427 (438)
T ss_pred H--HHHHHHHHHHHHhc
Confidence 5 36665555444443
No 148
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=89.16 E-value=7.4 Score=38.32 Aligned_cols=63 Identities=25% Similarity=0.203 Sum_probs=43.5
Q ss_pred eEeecCchhHHHHHhcCCceee--CCcccc------hhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh
Q 010825 382 FFTHSGWNSTIESLCAGVPMIC--WPFLGD------QPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~--~P~~~D------Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~ 453 (500)
|-|+ |..++..|+.+|.|+.. ++.++| =..|+.++++.+-..+.+ ++.+++..+|.++++|+.
T Consensus 248 VEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vvv--------V~~~ei~aaI~~l~edek 318 (457)
T KOG1250|consen 248 VETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVVV--------VEDDEIAAAILRLFEDEK 318 (457)
T ss_pred Eeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEEE--------eccHHHHHHHHHHHHhhh
Confidence 4444 56789999999998743 333444 234565665545555555 889999999999998765
No 149
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.16 E-value=4.1 Score=33.12 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=34.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
||++.+.++..|.....-++..|.+.|++|.+.......
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 589999999999999999999999999999888754433
No 150
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.43 E-value=1.3 Score=37.28 Aligned_cols=46 Identities=17% Similarity=0.166 Sum_probs=40.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+++.+|++.+.++.+|-.-..-++..|.++|++|+++...-..+.+
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i 46 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEF 46 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 4678999999999999999999999999999999999876554443
No 151
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=88.33 E-value=23 Score=33.56 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=39.3
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCC--CEEEEEeCCcchhhhhhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKG--FHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~~~~~~v~~~ 56 (500)
||+++-..+.|++.-+..+.++|+++. -+|++++.+...+.++..
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~ 47 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELM 47 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcC
Confidence 688999999999999999999999974 899999998877766553
No 152
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=88.26 E-value=5.2 Score=37.28 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=27.6
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
||||+.---+ =|---+.+|+++|.+.| +|+++.|...+..
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 3555544322 14455788999999988 8999999776544
No 153
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=87.81 E-value=5.9 Score=36.98 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=27.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
||||+.-=-+. |---+.+|+++|.+ +|+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 45666554333 44557888888865 689999999776543
No 154
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=87.24 E-value=1.7 Score=45.49 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=64.2
Q ss_pred cCceeeeccc--h-hHhhccCCcceeEeec---CchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 360 EKGFIASWCP--Q-EEVLNHPAIGGFFTHS---GWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 360 ~nv~~~~~~p--q-~~lL~~~~~~~~I~Hg---G~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
..|.+.++.+ + ...+.+..+ +|.=+ |.++..||+.+|+|+| .......+ +...-|..+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V-~d~~NG~li------ 472 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYV-EHNKNGYII------ 472 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceee-EcCCCcEEe------
Confidence 4677888887 4 357777776 88766 7889999999999999 33334444 445556665
Q ss_pred CCcCHHHHHHHHHHHhCCChh-HHHHHHHHHHHHHHH
Q 010825 434 NRVSRNEVEKQVRELMGGEKG-KQMRNKASKWKRFAE 469 (500)
Q Consensus 434 ~~~~~~~l~~~i~~vl~~~~~-~~~~~~a~~l~~~~~ 469 (500)
-+..+|.++|..+|.+..- .++...+-+.+....
T Consensus 473 --~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 473 --DDISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999998751 334444444444443
No 155
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.02 E-value=3.1 Score=43.02 Aligned_cols=104 Identities=13% Similarity=0.218 Sum_probs=63.0
Q ss_pred eeeccchh---HhhccCCcceeEe---ecCch-hHHHHHhcCCc----eeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 364 IASWCPQE---EVLNHPAIGGFFT---HSGWN-STIESLCAGVP----MICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 364 ~~~~~pq~---~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
+.+++++. +++..+|+ ||. +-|+| ++.||+++|+| +|+--..+ . . +...-|+.+
T Consensus 345 ~~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~---~-~~~~~g~lv----- 409 (460)
T cd03788 345 LYRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----A---A-EELSGALLV----- 409 (460)
T ss_pred EeCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc----c---h-hhcCCCEEE-----
Confidence 35677765 46889998 663 45655 67999999999 44432211 1 1 112235555
Q ss_pred CCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q 010825 433 DNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQV 489 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~ 489 (500)
+ .-+.++++++|.++++++.. .-++..++.++...+ -+...-++++++.+
T Consensus 410 ~-p~d~~~la~ai~~~l~~~~~-e~~~~~~~~~~~v~~-----~~~~~w~~~~l~~l 459 (460)
T cd03788 410 N-PYDIDEVADAIHRALTMPLE-ERRERHRKLREYVRT-----HDVQAWANSFLDDL 459 (460)
T ss_pred C-CCCHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHhh
Confidence 3 35789999999999987631 123333334444432 55567777777664
No 156
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=85.41 E-value=6.3 Score=36.60 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=27.8
Q ss_pred cEEEEEcCCCcC-cHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQS-HIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~G-H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
|||++.-- -| |---+.+|++.|. .+++|+++.|+..+.-
T Consensus 1 mrILlTND--DGi~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg 40 (252)
T COG0496 1 MRILLTND--DGIHAPGIRALARALR-EGADVTVVAPDREQSG 40 (252)
T ss_pred CeEEEecC--CccCCHHHHHHHHHHh-hCCCEEEEccCCCCcc
Confidence 34554432 23 5566778888888 9999999999877644
No 157
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.32 E-value=35 Score=32.44 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=53.9
Q ss_pred cCceeeeccc---hhHhhccCCcceeEee---cCchh-HHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCC
Q 010825 360 EKGFIASWCP---QEEVLNHPAIGGFFTH---SGWNS-TIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGD 432 (500)
Q Consensus 360 ~nv~~~~~~p---q~~lL~~~~~~~~I~H---gG~~s-~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~ 432 (500)
.++.+.++++ ...++..+++ ++.- .|.|. +.||+++|+|+|... .......+ ...+.|. +
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~-~~~~~g~-~----- 323 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVV-EDGETGL-L----- 323 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHh-cCCCceE-e-----
Confidence 5677789888 2346777777 6655 35544 599999999997644 33333333 3322466 4
Q ss_pred CCCcCHHHHHHHHHHHhCCCh
Q 010825 433 DNRVSRNEVEKQVRELMGGEK 453 (500)
Q Consensus 433 ~~~~~~~~l~~~i~~vl~~~~ 453 (500)
....+.+++.+++..++++.+
T Consensus 324 ~~~~~~~~~~~~i~~~~~~~~ 344 (381)
T COG0438 324 VPPGDVEELADALEQLLEDPE 344 (381)
T ss_pred cCCCCHHHHHHHHHHHhcCHH
Confidence 222278999999999998864
No 158
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=85.02 E-value=3.7 Score=42.99 Aligned_cols=81 Identities=15% Similarity=0.112 Sum_probs=50.6
Q ss_pred chhHhhccCCcceeEe---ecCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhh-cceeEeeeCCCC-CCcCHHHHH
Q 010825 369 PQEEVLNHPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEW-GVGLEIINGGDD-NRVSRNEVE 442 (500)
Q Consensus 369 pq~~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~-G~g~~~~~~~~~-~~~~~~~l~ 442 (500)
+..+++..|++ +|. +=|+| ++.||+++|+|+|.....+=- .++..+...- ..|+.+..++.+ -..+.++|.
T Consensus 467 ~y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~-~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG-CFMEEHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchh-hhhHHHhccCCCceEEEecCCccchHHHHHHHH
Confidence 46678888888 655 45655 899999999999997653210 1112221111 257777222212 246778999
Q ss_pred HHHHHHhCCC
Q 010825 443 KQVRELMGGE 452 (500)
Q Consensus 443 ~~i~~vl~~~ 452 (500)
+++.++++.+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 9999988654
No 159
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=84.88 E-value=1.5 Score=36.48 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=37.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
|||++...|+.+=+. ...+.++|.++|++|.++.++...+.+...
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~~~~ 45 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFVTPE 45 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHSHHH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHhhhh
Confidence 589999989877776 999999999999999999998877766654
No 160
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=84.42 E-value=11 Score=37.38 Aligned_cols=108 Identities=9% Similarity=0.038 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCee-EEeCCCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFR-FEAIPDGLPASSDES 84 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-f~~l~~~~~~~~~~~ 84 (500)
.+.+||+++-..+.|++.-...+.+.|.++ +.+|++++.+.+.+.++.. |.++ ++.++.. ..
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~id~vi~~~~~--~~---- 67 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSEN---------PEINALYGIKNK--KA---- 67 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccC---------CCceEEEEeccc--cc----
Confidence 345789999999999999999999999987 8999999998887765443 2332 2222210 00
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
.....+. .+..++.++... +||++|.-........++...|.|..+
T Consensus 68 ----~~~~~~~---------~~~~l~~~lr~~------~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 68 ----GASEKIK---------NFFSLIKVLRAN------KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred ----cHHHHHH---------HHHHHHHHHhhC------CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 0000011 112445555554 999999654444456667777888765
No 161
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=84.00 E-value=11 Score=35.26 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=27.9
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
||||+.---+. |---+.+|+++|.+. |+|+++.|...+.-
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 35555543332 455588999999988 79999999776543
No 162
>PRK14099 glycogen synthase; Provisional
Probab=83.52 E-value=20 Score=37.37 Aligned_cols=41 Identities=10% Similarity=0.178 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCC------CcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 8 CSKVHAVCIPSP------SQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~------~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|++|||++++.- +.|=-.-.-.|.++|+++||+|.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 367899999865 22444557789999999999999999843
No 163
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.17 E-value=5.2 Score=34.40 Aligned_cols=41 Identities=20% Similarity=0.226 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
.|||.+.-.|+.|-..-.+.+++.|.++|+.|-=+.++.-+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR 45 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVR 45 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeee
Confidence 47999999999999999999999999999999655554433
No 164
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=83.15 E-value=6.6 Score=35.42 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
++.+|++.+.++..|-....-++..|.+.|++|+++...-..+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~ 123 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPE 123 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 3679999999999999999999999999999999887654433
No 165
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=83.01 E-value=16 Score=34.37 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=27.6
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
||||+.---+. |-.-+.+|++.|...| +|+++.|...+.
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 35555543333 5566889999998888 799999977554
No 166
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=82.86 E-value=40 Score=35.00 Aligned_cols=112 Identities=13% Similarity=0.089 Sum_probs=73.3
Q ss_pred ceeeeccchhH---hhccCCcceeEe--ecCchhH-HHHHhcCC----ceeeCCcccchhhhHHHhhhhhcceeEeeeCC
Q 010825 362 GFIASWCPQEE---VLNHPAIGGFFT--HSGWNST-IESLCAGV----PMICWPFLGDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 362 v~~~~~~pq~~---lL~~~~~~~~I~--HgG~~s~-~eal~~Gv----P~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
+++.+.+|+.+ ++.-+|+ ++|| .-|+|-+ .|.++++. |+|+--+ .-|. +.+.-++.+
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSef-----aGaa---~~l~~AllV---- 430 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEF-----AGAA---VELKGALLT---- 430 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecc-----ccch---hhcCCCEEE----
Confidence 35577788654 6778888 4444 4588854 59999877 4444221 1121 234456777
Q ss_pred CCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 010825 432 DDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLSEG 494 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~ 494 (500)
+. .+.++++++|.+.|+.+..| =+++.+++.+.++. .....=.+.|++.+.+..+
T Consensus 431 -NP-~d~~~~A~ai~~AL~m~~~E-r~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~~~ 485 (487)
T TIGR02398 431 -NP-YDPVRMDETIYVALAMPKAE-QQARMREMFDAVNY-----YDVQRWADEFLAAVSPQAQ 485 (487)
T ss_pred -CC-CCHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhccc
Confidence 54 68999999999999977422 35566666666664 4556778889888876543
No 167
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=82.64 E-value=24 Score=31.66 Aligned_cols=39 Identities=10% Similarity=0.357 Sum_probs=30.0
Q ss_pred cEEEEEc--CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIP--SPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+|++.+. -++.|-..-...||..|+++|++|.++-....
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 5555554 34667888999999999999999999865443
No 168
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=81.87 E-value=4.3 Score=44.95 Aligned_cols=100 Identities=9% Similarity=0.158 Sum_probs=66.3
Q ss_pred HhhccCCcceeEe---ecCch-hHHHHHhcCCc---eeeCCcccchhhhHHHhhhhhc-ceeEeeeCCCCCCcCHHHHHH
Q 010825 372 EVLNHPAIGGFFT---HSGWN-STIESLCAGVP---MICWPFLGDQPTNCRYTCNEWG-VGLEIINGGDDNRVSRNEVEK 443 (500)
Q Consensus 372 ~lL~~~~~~~~I~---HgG~~-s~~eal~~GvP---~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~~l~~ 443 (500)
+++..+++ |+. .-|+| +++|++++|+| ++++.-+ -..+. .+| -|+.+ +. .+.+++++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~----~l~~~allV-----nP-~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQ----SLGAGALLV-----NP-WNITEVSS 435 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchh----hhcCCeEEE-----CC-CCHHHHHH
Confidence 68889998 664 44877 67799999999 4444422 22222 233 46677 43 68999999
Q ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 010825 444 QVRELMG-GEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLSE 493 (500)
Q Consensus 444 ~i~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~ 493 (500)
+|.++|+ ++. +-+++.+++.+...+ -+...-.+.|++.+.+..
T Consensus 436 AI~~aL~m~~~--er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~~ 479 (797)
T PLN03063 436 AIKEALNMSDE--ERETRHRHNFQYVKT-----HSAQKWADDFMSELNDII 479 (797)
T ss_pred HHHHHHhCCHH--HHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHHh
Confidence 9999998 433 234455556666554 455677888888876654
No 169
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=81.54 E-value=23 Score=33.62 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=30.1
Q ss_pred CCcEEEEEcCC--CcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 9 SKVHAVCIPSP--SQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 9 ~~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
++.|++.++.+ +.|-..-...||..|++.|++|.++-..
T Consensus 101 ~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 101 EGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 44565555554 5678888999999999999999998653
No 170
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.84 E-value=59 Score=31.88 Aligned_cols=104 Identities=18% Similarity=0.131 Sum_probs=69.5
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (500)
++|+++-.-+.|++.=.+.+...|.++ +.++++++++.+.+.+... +.++-...-+. .. .
T Consensus 2 ~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~---------p~I~~vi~~~~--~~---~---- 63 (334)
T COG0859 2 MKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLN---------PEIDKVIIIDK--KK---K---- 63 (334)
T ss_pred ceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcC---------hHhhhhccccc--cc---c----
Confidence 689999999999999999999999998 5999999998887765443 22221110000 00 0
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
. .. ......+.+.+... +||+||.=.-.+=...++...++|.-.
T Consensus 64 ~----------~~-~~~~~~l~~~lr~~------~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 64 G----------LG-LKERLALLRTLRKE------RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred c----------cc-hHHHHHHHHHhhcc------CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0 00 12223555666554 899999776555566677788888776
No 171
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=80.60 E-value=3.2 Score=41.47 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=61.6
Q ss_pred cCcee-eeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhh---hhhcceeEeeeCCCCCC
Q 010825 360 EKGFI-ASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTC---NEWGVGLEIINGGDDNR 435 (500)
Q Consensus 360 ~nv~~-~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~---~~~G~g~~~~~~~~~~~ 435 (500)
+++.. .+..+-.++|..+|+ +||=- .+.+.|.+..++|++.+..-.|.+...+-+- +....|..+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~-------- 320 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIV-------- 320 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EE--------
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCcee--------
Confidence 45554 344567899999999 99988 4488999999999998766555443221110 122334444
Q ss_pred cCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHH
Q 010825 436 VSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEE 470 (500)
Q Consensus 436 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~ 470 (500)
-+.++|.++|..++++++ .++++.++..+++..
T Consensus 321 ~~~~eL~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 353 (369)
T PF04464_consen 321 YNFEELIEAIENIIENPD--EYKEKREKFRDKFFK 353 (369)
T ss_dssp SSHHHHHHHHTTHHHHHH--HTHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHhhhhCCH--HHHHHHHHHHHHhCC
Confidence 788999999999987654 356667777777754
No 172
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=80.47 E-value=28 Score=33.22 Aligned_cols=43 Identities=9% Similarity=0.130 Sum_probs=37.1
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
+...|.+.-.|+-|--.-.-+|.++|.++||.|.++..++...
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3458888889999999999999999999999999998766543
No 173
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=80.05 E-value=17 Score=35.87 Aligned_cols=103 Identities=11% Similarity=0.020 Sum_probs=68.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeE-EeCCCCCCCCCCCCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRF-EAIPDGLPASSDESSTT 87 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f-~~l~~~~~~~~~~~~~~ 87 (500)
|||+++-..+.|++.-...+.+.|+++ +.+|++++.+.+.+.++.. |.++- +.++.. .. .
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------P~vd~vi~~~~~--~~------~ 63 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRM---------PEVNEAIPMPLG--HG------A 63 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcC---------CccCEEEecccc--cc------h
Confidence 589999999999999999999999986 8999999998877776553 23322 122110 00 0
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 88 QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
.. + ....++++.+... +||++|.=....-...++...|+|.-+
T Consensus 64 ~~----~---------~~~~~l~~~lr~~------~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 64 LE----I---------GERRRLGHSLREK------RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred hh----h---------HHHHHHHHHHHhc------CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 00 0 0112444555544 999999654444556677777888665
No 174
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.25 E-value=37 Score=33.09 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=77.9
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCcc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTT 87 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 87 (500)
.+|.|++++..|-.||--.|--=|..|++.|.+|.+++....... ++ ..+.++++++.++.- +.. ....
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~-e~------l~~hprI~ih~m~~l-~~~---~~~p 78 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPL-EE------LLNHPRIRIHGMPNL-PFL---QGGP 78 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCCh-HH------HhcCCceEEEeCCCC-ccc---CCCc
Confidence 457899999999999999999999999999999999987554322 11 123468999998732 211 1112
Q ss_pred ccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcC-CcchHHHHH----HHhCCCeEEEeccchhH
Q 010825 88 QDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDG-FLPFTVTAA----QQLGLPIVLLFTISACS 157 (500)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~-~~~~~~~~A----~~lgiP~v~~~~~~~~~ 157 (500)
..+...++.+...+ ..+-.|+- + +++|.|++-. -+.....++ .-.|...++=++.-.|+
T Consensus 79 ~~~~l~lKvf~Qfl--~Ll~aL~~-~--------~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 79 RVLFLPLKVFWQFL--SLLWALFV-L--------RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hhhhhHHHHHHHHH--HHHHHHHh-c--------cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 22222333333333 22223332 2 2789888765 222333333 44577888766665554
No 175
>PRK11519 tyrosine kinase; Provisional
Probab=78.02 E-value=34 Score=37.63 Aligned_cols=40 Identities=10% Similarity=0.259 Sum_probs=31.9
Q ss_pred CcEEEEEcC--CCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPS--PSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+.|+++++. |+.|-..-...||..|+..|++|.++-.+..
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dlr 566 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR 566 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 445666554 6778999999999999999999999976543
No 176
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=77.94 E-value=22 Score=27.17 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 27 MLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
++.+++.|.+.|++| ++ ++...+.+.+.
T Consensus 2 ~~~~~~~l~~lG~~i-~A-T~gTa~~L~~~ 29 (90)
T smart00851 2 LVELAKRLAELGFEL-VA-TGGTAKFLREA 29 (90)
T ss_pred HHHHHHHHHHCCCEE-EE-ccHHHHHHHHC
Confidence 468899999999998 34 44455555553
No 177
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=77.85 E-value=3.9 Score=33.35 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=27.6
Q ss_pred cEEEEEcCCCcC---cHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQS---HIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~G---H~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
|||+|+.-|-.+ .-.-..+++.+-.+|||+|.++.+...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 578888877655 345688899999999999999988664
No 178
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.37 E-value=34 Score=31.42 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=31.8
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch---HHHHHHHhCCCeEE
Q 010825 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF---TVTAAQQLGLPIVL 149 (500)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~---~~~~A~~lgiP~v~ 149 (500)
...++.+++.++ +.++.+.|.-+++ +..+|+..|||++.
T Consensus 137 ~~aM~~~m~~Lk--------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEALK--------ERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHHH--------HCCeEEEcccccccchhhhhHhhcCCceee
Confidence 456788888887 5599999997773 56789999999996
No 179
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=76.75 E-value=9.1 Score=36.27 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=35.2
Q ss_pred CceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCceeeCCc
Q 010825 361 KGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICWPF 406 (500)
Q Consensus 361 nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~ 406 (500)
.+.+.+-++-.++|.+++. |||-.+. +-.||+.+|+|++++.-
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 3445667788899999998 8887664 78999999999999764
No 180
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=76.58 E-value=35 Score=31.46 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCC-CEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKG-FHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rG-H~Vt~~~~~~~~~~ 52 (500)
|+|++.--++.|-..-.-.|+++|.++| ++|..+-.+++...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCCh
Confidence 5899999999999888888899998886 99999987665443
No 181
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=76.57 E-value=4.5 Score=36.21 Aligned_cols=44 Identities=9% Similarity=-0.038 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
.++||++.-.|+.|=+.-...++++|.++||+|.++.++...+.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~aA~~~ 47 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYTVQTT 47 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHhHHHH
Confidence 46788888877766655579999999999999999998776544
No 182
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.42 E-value=46 Score=28.72 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=29.1
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEE
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFV 44 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (500)
-|.+++.++.|-....+.+|-+-+.+|+.|.++
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467788889999999999999999999999994
No 183
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=76.36 E-value=17 Score=34.22 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=34.3
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
|++..-|+.|...-...+|..+++.|++|.++..+.. ..+...
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~ 45 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDS 45 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHH
Confidence 4555577889999999999999999999999988664 344443
No 184
>PHA02542 41 41 helicase; Provisional
Probab=75.52 E-value=7.9 Score=40.00 Aligned_cols=44 Identities=14% Similarity=0.257 Sum_probs=37.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+-=+++...|+.|-....+.+|...++.|+.|.|++-+...+.+
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql 233 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVI 233 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHH
Confidence 33467788899999999999999999899999999988776543
No 185
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=75.28 E-value=73 Score=29.88 Aligned_cols=72 Identities=19% Similarity=0.246 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcC-----cee-----eeccchhHhhccCCcceeEeecCchhHH
Q 010825 323 VAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-----GFI-----ASWCPQEEVLNHPAIGGFFTHSGWNSTI 392 (500)
Q Consensus 323 l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~n-----v~~-----~~~~pq~~lL~~~~~~~~I~HgG~~s~~ 392 (500)
+...+++.+..|+.+++-. .|+.....+..| +.+ +++=|..++|..++. .++|--..|-..
T Consensus 189 l~k~l~~~g~~~lisfSRR--------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady-ii~TaDSinM~s 259 (329)
T COG3660 189 LVKILENQGGSFLISFSRR--------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY-IISTADSINMCS 259 (329)
T ss_pred HHHHHHhCCceEEEEeecC--------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce-EEEecchhhhhH
Confidence 4455667788888887644 233322222221 222 356689999998886 455666788889
Q ss_pred HHHhcCCceee
Q 010825 393 ESLCAGVPMIC 403 (500)
Q Consensus 393 eal~~GvP~v~ 403 (500)
||.+.|+|+.+
T Consensus 260 EAasTgkPv~~ 270 (329)
T COG3660 260 EAASTGKPVFI 270 (329)
T ss_pred HHhccCCCeEE
Confidence 99999999977
No 186
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=73.70 E-value=23 Score=33.37 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHHhC---CCEEEEEeCCcchh
Q 010825 23 HIKAMLKLAKLLHHK---GFHITFVNTEFNHR 51 (500)
Q Consensus 23 H~~p~l~La~~L~~r---GH~Vt~~~~~~~~~ 51 (500)
|---+.+|++.|.+. |++|+++.|...+.
T Consensus 12 ~a~Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 12 NAPGLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred CCHhHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 444566777877663 47999999977654
No 187
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=73.36 E-value=6 Score=35.80 Aligned_cols=37 Identities=8% Similarity=0.236 Sum_probs=31.9
Q ss_pred EEEEEcCC--CcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSP--SQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+|.+++++ +.|-..-.-+|+-.|+.+|+.|.++-..-
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 67777776 66899999999999999999999997654
No 188
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=72.80 E-value=72 Score=28.70 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=30.9
Q ss_pred CcEEEEEc--CCCcCcHHHHHHHHHHHHh-CCCEEEEEeCCcc
Q 010825 10 KVHAVCIP--SPSQSHIKAMLKLAKLLHH-KGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~--~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~ 49 (500)
+++++.+. -++.|-..-...||..|++ .|++|.++-....
T Consensus 34 ~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 34 NNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 45555555 4677888899999999996 6999999866543
No 189
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=72.32 E-value=37 Score=35.32 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=40.9
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.++.-+++.-.|+.|-..-.+.++.+.+++|..|.+++.+...+.+..
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~ 308 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLR 308 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHH
Confidence 345678888889999999999999999999999999999887765544
No 190
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=72.02 E-value=12 Score=30.34 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=34.0
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+|+++.+.+..-|-.-...++..|.++||+|.++.....
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~~ 39 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANVP 39 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB-
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 478999999999999999999999999999999865443
No 191
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.25 E-value=62 Score=29.31 Aligned_cols=36 Identities=14% Similarity=0.261 Sum_probs=30.6
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|.+.-+|+.|-......||++|.+++|+|...+...
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy 39 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDY 39 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhh
Confidence 556667899999999999999999999998776633
No 192
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=71.25 E-value=21 Score=34.78 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=39.1
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFL 54 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~ 54 (500)
|||+++-..+.|++.-..++.+.|.+. +.+|++++.+.+.+.++
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~~ 46 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIPS 46 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHHh
Confidence 589999999999999999999999987 99999999987766553
No 193
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.20 E-value=6.9 Score=37.09 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=55.3
Q ss_pred eeccchhHhhccCCcceeEeecCchhHH-HHHhcCCceeeCCcccchhh--hHHHhhhhhcceeEeeeCCCCCCcCHHHH
Q 010825 365 ASWCPQEEVLNHPAIGGFFTHSGWNSTI-ESLCAGVPMICWPFLGDQPT--NCRYTCNEWGVGLEIINGGDDNRVSRNEV 441 (500)
Q Consensus 365 ~~~~pq~~lL~~~~~~~~I~HgG~~s~~-eal~~GvP~v~~P~~~DQ~~--na~~~~~~~G~g~~~~~~~~~~~~~~~~l 441 (500)
+.|-...++|.++++ .|-- .||.. +++-.|||+|.+|-.+-|+. .|.+=..-+|+.+.+ -. .+.+.
T Consensus 300 lsqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl-----v~--~~aq~ 368 (412)
T COG4370 300 LSQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL-----VR--PEAQA 368 (412)
T ss_pred EeHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee-----cC--Cchhh
Confidence 555566677777776 4433 33433 45778999999999999965 454442335777777 31 22233
Q ss_pred HHH-HHHHhCCChhHHHHHHHH-HHHHHHHH
Q 010825 442 EKQ-VRELMGGEKGKQMRNKAS-KWKRFAEE 470 (500)
Q Consensus 442 ~~~-i~~vl~~~~~~~~~~~a~-~l~~~~~~ 470 (500)
... +.+++.|+. +..+++ .=++++..
T Consensus 369 a~~~~q~ll~dp~---r~~air~nGqrRiGq 396 (412)
T COG4370 369 AAQAVQELLGDPQ---RLTAIRHNGQRRIGQ 396 (412)
T ss_pred HHHHHHHHhcChH---HHHHHHhcchhhccC
Confidence 333 344898887 555555 33445554
No 194
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=71.11 E-value=36 Score=27.25 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
+=.-++.+|+.|.+.|+++ ++++...+.+.+.
T Consensus 10 ~K~~~~~~a~~l~~~G~~i--~AT~gTa~~L~~~ 41 (112)
T cd00532 10 VKAMLVDLAPKLSSDGFPL--FATGGTSRVLADA 41 (112)
T ss_pred cHHHHHHHHHHHHHCCCEE--EECcHHHHHHHHc
Confidence 4455789999999999988 3555556666654
No 195
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=70.15 E-value=7.1 Score=38.83 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.=|++=--|+-|--.=+++++..|+++| .|.+++.+...+++
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~Qi 135 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQI 135 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHH
Confidence 45567777788999999999999999999 99999999887654
No 196
>PRK08506 replicative DNA helicase; Provisional
Probab=70.15 E-value=34 Score=35.42 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
++-=+++...|+.|-....+.+|...++.|+.|.|++.+.....+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~ 236 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLM 236 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHH
Confidence 4445677888999999999999999988999999999988765543
No 197
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=70.11 E-value=32 Score=34.63 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=37.5
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
.++..|+++-.=+.|-..-.-.||+.|.++|+.|.+++.+.++.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 34566777777788999999999999999999999999877654
No 198
>PRK14099 glycogen synthase; Provisional
Probab=69.70 E-value=7.6 Score=40.44 Aligned_cols=87 Identities=9% Similarity=0.129 Sum_probs=48.9
Q ss_pred hcCc-eeeeccchh-Hhh-ccCCcceeEe---ecCch-hHHHHHhcCCceeeCCccc--chhhhHHHhhh--hhcceeEe
Q 010825 359 KEKG-FIASWCPQE-EVL-NHPAIGGFFT---HSGWN-STIESLCAGVPMICWPFLG--DQPTNCRYTCN--EWGVGLEI 427 (500)
Q Consensus 359 ~~nv-~~~~~~pq~-~lL-~~~~~~~~I~---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~--~~G~g~~~ 427 (500)
++++ .+.+|-... .++ +.+|+ ||. +=|+| +.+||+++|+|.|+....+ |.-.......+ .-+.|..+
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~ 426 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQF 426 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEe
Confidence 4455 456763332 234 45787 764 34444 7789999997766654321 21111100001 01467777
Q ss_pred eeCCCCCCcCHHHHHHHHHH---HhCCCh
Q 010825 428 INGGDDNRVSRNEVEKQVRE---LMGGEK 453 (500)
Q Consensus 428 ~~~~~~~~~~~~~l~~~i~~---vl~~~~ 453 (500)
+ .-++++|.++|.+ +++|+.
T Consensus 427 -----~-~~d~~~La~ai~~a~~l~~d~~ 449 (485)
T PRK14099 427 -----S-PVTADALAAALRKTAALFADPV 449 (485)
T ss_pred -----C-CCCHHHHHHHHHHHHHHhcCHH
Confidence 4 3578999999987 565654
No 199
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=69.13 E-value=20 Score=33.67 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=24.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
|+|+++- +.|. -..|++.|.++||+|+..+....
T Consensus 1 m~ILvlG--GT~e---gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMG--GTVD---SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEEe--chHH---HHHHHHHHHhCCCeEEEEEccCC
Confidence 3566553 3332 78899999999999988776554
No 200
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=67.51 E-value=35 Score=33.33 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=66.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhhhcCCCCCCCCCCee-EEeCCCCCCCCCCCCCccc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLKSRGEHSLGGLPSFR-FEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~ 88 (500)
||+++-..+.|++.-...+.+.|.+. +.+|++++.+.+.+.++.. |.++ +..++.. .. ..
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~---------p~id~v~~~~~~--~~------~~ 63 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERM---------PEIRQAIDMPLG--HG------AL 63 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcC---------chhceeeecCCc--cc------ch
Confidence 68999999999999999999999986 8999999988776665543 2222 1222110 00 00
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEE
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~ 149 (500)
. + . ...+++..+... +||++|.-....-...++...|+|.-+
T Consensus 64 ~---~----~------~~~~~~~~lr~~------~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 64 E---L----T------ERRRLGRSLREE------RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred h---h----h------HHHHHHHHHhhc------CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 0 0 0 112344555544 999999865555566677777887653
No 201
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=67.37 E-value=90 Score=35.26 Aligned_cols=99 Identities=9% Similarity=0.101 Sum_probs=59.8
Q ss_pred HhhccCCcceeEe---ecCch-hHHHHHhcCC---ceeeCCcccchhhhHHHhhhhhc-ceeEeeeCCCCCCcCHHHHHH
Q 010825 372 EVLNHPAIGGFFT---HSGWN-STIESLCAGV---PMICWPFLGDQPTNCRYTCNEWG-VGLEIINGGDDNRVSRNEVEK 443 (500)
Q Consensus 372 ~lL~~~~~~~~I~---HgG~~-s~~eal~~Gv---P~v~~P~~~DQ~~na~~~~~~~G-~g~~~~~~~~~~~~~~~~l~~ 443 (500)
+++..+++ ++- .-|+| ..+|.++++. -+++++-+ +-.. +.+| -|+.+ +. .+.+++++
T Consensus 455 AlY~~ADV--~lvTslrDGmNLva~Eyva~~~~~~GvLILSEf------aGaa-~~L~~~AllV-----NP-~D~~~vA~ 519 (934)
T PLN03064 455 ALYAVTDV--ALVTSLRDGMNLVSYEFVACQDSKKGVLILSEF------AGAA-QSLGAGAILV-----NP-WNITEVAA 519 (934)
T ss_pred HHHHhCCE--EEeCccccccCchHHHHHHhhcCCCCCeEEeCC------CchH-HHhCCceEEE-----CC-CCHHHHHH
Confidence 57778888 443 45888 4559999954 12222211 1112 2343 45666 43 78999999
Q ss_pred HHHHHhC-CChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 444 QVRELMG-GEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 444 ~i~~vl~-~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
+|.++|+ +++ +-+++.+++.+.... -+...-++.|++.|.+.
T Consensus 520 AI~~AL~M~~~--Er~~r~~~~~~~V~~-----~d~~~Wa~~fl~~L~~~ 562 (934)
T PLN03064 520 SIAQALNMPEE--EREKRHRHNFMHVTT-----HTAQEWAETFVSELNDT 562 (934)
T ss_pred HHHHHHhCCHH--HHHHHHHHHHhhccc-----CCHHHHHHHHHHHHHHH
Confidence 9999997 433 234444444444443 45567788888888665
No 202
>PRK10867 signal recognition particle protein; Provisional
Probab=67.37 E-value=39 Score=34.48 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhC-CCEEEEEeCCcchhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRR 52 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~ 52 (500)
+.-|+++-.++.|-..-...||..|+++ |+.|.+++.+.++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 3456777777889999999999999999 999999998876643
No 203
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=67.35 E-value=5.2 Score=35.54 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCcCcHHH------------HHHHHHHHHhCCCEEEEEeCCc
Q 010825 10 KVHAVCIPSPSQSHIKA------------MLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
++||++...|++=.+.| -..||+++..||++||++..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 56777777776655554 5789999999999999999864
No 204
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=67.09 E-value=15 Score=40.45 Aligned_cols=111 Identities=7% Similarity=0.043 Sum_probs=69.8
Q ss_pred eeeccchh---HhhccCCcceeEee---cCch-hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCc
Q 010825 364 IASWCPQE---EVLNHPAIGGFFTH---SGWN-STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRV 436 (500)
Q Consensus 364 ~~~~~pq~---~lL~~~~~~~~I~H---gG~~-s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~ 436 (500)
+.+++++. ++++.+++ |+.- -|+| ++.|++++|+|-..+|+..+--.-+.. +.-|+.+ +. .
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~----l~~~llv-----~P-~ 413 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAE----LAEALLV-----NP-N 413 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhHH----hCcCeEE-----CC-C
Confidence 45677765 47888888 6643 3655 789999997753333332222111222 2236676 43 6
Q ss_pred CHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhc
Q 010825 437 SRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLS 492 (500)
Q Consensus 437 ~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~ 492 (500)
+.++++++|.+++..+.. +-+++.+++++.+++ -+...-++++++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~~-e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPEE-EQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 799999999999986531 234445555555543 56678888888888766
No 205
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=66.74 E-value=16 Score=27.33 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
.-++++..+...|...+-.+|+.|+++|..|..+-.
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 577888888888999999999999999999986643
No 206
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=66.69 E-value=96 Score=27.69 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=62.6
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC---C--cchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT---E--FNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSD 82 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~---~--~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~ 82 (500)
+++-.|.++...+.|-....+.+|-+.+.+|++|.++-- . .....+.+ ..+++.+..+..++...
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~--------~l~~v~~~~~g~~~~~~-- 89 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE--------FGGGVEFHVMGTGFTWE-- 89 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh--------cCCCcEEEECCCCCccc--
Confidence 356789999999999999999999999999999998752 1 11111111 12368888776544333
Q ss_pred CCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010825 83 ESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (500)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~ 134 (500)
. .+...-... . ...++...+.+.. .++|+||.|-+..
T Consensus 90 ~----~~~~e~~~~----~-~~~~~~a~~~l~~------~~ydlvVLDEi~~ 126 (191)
T PRK05986 90 T----QDRERDIAA----A-REGWEEAKRMLAD------ESYDLVVLDELTY 126 (191)
T ss_pred C----CCcHHHHHH----H-HHHHHHHHHHHhC------CCCCEEEEehhhH
Confidence 1 111111111 1 2223333333333 3899999998665
No 207
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=66.43 E-value=31 Score=30.84 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.5
Q ss_pred CCeeEEEEcCCcc--hHHHHHHHhCCCeEEEeccc
Q 010825 122 PAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTIS 154 (500)
Q Consensus 122 ~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~ 154 (500)
..||+||+-...- .+..=|.++|||+|.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 3899998654332 56677899999999986554
No 208
>CHL00175 minD septum-site determining protein; Validated
Probab=66.36 E-value=1.1e+02 Score=28.96 Aligned_cols=38 Identities=8% Similarity=0.288 Sum_probs=29.9
Q ss_pred cEEEEEc--CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIP--SPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.+++.+. -|+.|-..-...||..|+++|++|.++-.+.
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~ 54 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADI 54 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3444444 4677899999999999999999999986543
No 209
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=66.33 E-value=39 Score=31.81 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=35.6
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
++.-+++.-.|+.|-....+.++...+++|..|.|++.+...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~ 76 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPA 76 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCc
Confidence 446677788889999999999999998999999999987543
No 210
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=66.06 E-value=71 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.284 Sum_probs=24.1
Q ss_pred CCCcCcHHHHHHHHHHHHhCCCEEEEE
Q 010825 18 SPSQSHIKAMLKLAKLLHHKGFHITFV 44 (500)
Q Consensus 18 ~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (500)
.++.|-..-.+.|++.|.++|.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 456788999999999999999999997
No 211
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=65.61 E-value=60 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~v~~ 55 (500)
++-=+++.-.|+.|=....+.++..++.+ |+.|.+++.+...+.+..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~ 59 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQ 59 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHH
Confidence 34456667777889999999999999887 999999999876654433
No 212
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=65.51 E-value=72 Score=28.09 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=21.5
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCE
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFH 40 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~ 40 (500)
|||+|+.+++. ..+..+.++|.+++|+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 68999876655 5567778899999998
No 213
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=65.14 E-value=30 Score=33.52 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=31.4
Q ss_pred EEEEEc-CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 12 HAVCIP-SPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 12 ~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
|++|+. -|+.|-..-..++|-.++++|++|.++++++...
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCcc
Confidence 455544 4577999999999999999999999999876543
No 214
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=64.61 E-value=58 Score=29.63 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=24.8
Q ss_pred CCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 18 SPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 18 ~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
....|-..-.+.|++.|.++|++|.++-|
T Consensus 8 ~t~~GKT~vs~~L~~~l~~~g~~v~~~KP 36 (222)
T PRK00090 8 DTDVGKTVVTAALAQALREAGYSVAGYKP 36 (222)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCceEEEee
Confidence 34568999999999999999999988763
No 215
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=63.65 E-value=18 Score=32.55 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
.+.+|++.+.++..|-....-++.-|..+|++|++++..-..+.+.
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v 128 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVV 128 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHH
Confidence 4569999999999999999999999999999999998765544433
No 216
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=63.61 E-value=1.3e+02 Score=29.59 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=61.3
Q ss_pred cCcee-eeccch---hHhhccCCcceeEee--cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 360 EKGFI-ASWCPQ---EEVLNHPAIGGFFTH--SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 360 ~nv~~-~~~~pq---~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
+|+.+ .+++|. .++|..|+++.|+|. =|+|++.-.++.|+|+++ ..+-..-..+ .+.|+-+.. .
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L----~~~np~~~~l-~~~~ipVlf-----~ 314 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFL----SRDNPFWQDL-KEQGIPVLF-----Y 314 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEE----ecCChHHHHH-HhCCCeEEe-----c
Confidence 46754 778885 569999999777764 599999999999999987 3333333444 346888877 5
Q ss_pred -CCcCHHHHHHHHHHHhC
Q 010825 434 -NRVSRNEVEKQVRELMG 450 (500)
Q Consensus 434 -~~~~~~~l~~~i~~vl~ 450 (500)
..++...++++=+++..
T Consensus 315 ~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 315 GDELDEALVREAQRQLAN 332 (360)
T ss_pred cccCCHHHHHHHHHHHhh
Confidence 78999999999887765
No 217
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=63.45 E-value=22 Score=33.34 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=22.7
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
|||+++..-+.| ..|++.|.++|+ |.+-...+.
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t~~ 33 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSVATSY 33 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEEEhhh
Confidence 577777655554 579999999999 655444333
No 218
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=63.34 E-value=12 Score=33.32 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=34.7
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
+||++.-.|+.|=+.-.+.+.++|.+.|++|+++.++....
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~~ 41 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQT 41 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHHH
Confidence 37888888888888888899999999999999999876543
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=62.59 E-value=56 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=31.9
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
-|+++-..+.|-..-...||..+..+|..|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 466666778899999999999999999999999987664
No 220
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=62.50 E-value=1.3e+02 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.101 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+.+++...-++.|-......||..|+++|++|.++-.+..
T Consensus 3 ~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4566666777889999999999999999999999976543
No 221
>PRK06321 replicative DNA helicase; Provisional
Probab=62.47 E-value=60 Score=33.61 Aligned_cols=42 Identities=10% Similarity=0.196 Sum_probs=35.1
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHH-hCCCEEEEEeCCcchhhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~v 53 (500)
=|++...|+.|-....+.+|...+ +.|+.|.|++.+.....+
T Consensus 228 LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql 270 (472)
T PRK06321 228 LMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQL 270 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHH
Confidence 457778889999999999999987 459999999998776544
No 222
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=62.37 E-value=64 Score=31.41 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
+--|+|+-.-+.|-..-.-.||..|.+.|+.|.++..+.|+.-
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 4567777788999999999999999999999999999888753
No 223
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=62.11 E-value=11 Score=33.36 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=35.0
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
+||++...++.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~A~~fi~ 44 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKAATKFIT 44 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChhHHHHcC
Confidence 478888878777665 7999999999999999999877665544
No 224
>PRK11823 DNA repair protein RadA; Provisional
Probab=60.94 E-value=35 Score=35.07 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=36.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.-+++.-.|+.|-..-++.++..++++|+.|.+++.+...+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi 123 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQI 123 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHH
Confidence 44567777788999999999999999999999999988766554
No 225
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=60.67 E-value=62 Score=29.94 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=23.8
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHhCCCeEEEeccch
Q 010825 123 AVSCIIS-DGFLP-FTVTAAQQLGLPIVLLFTISA 155 (500)
Q Consensus 123 ~pDlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 155 (500)
-||++++ |+..- -+..=|.++|||+|.+.-+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 3998875 54332 567779999999999865533
No 226
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=60.43 E-value=78 Score=31.03 Aligned_cols=100 Identities=19% Similarity=0.233 Sum_probs=61.9
Q ss_pred CcEEEEEcCCCcC-----cHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010825 10 KVHAVCIPSPSQS-----HIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDES 84 (500)
Q Consensus 10 ~~~il~~~~~~~G-----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 84 (500)
+..|++.|..+.| -..-+..|++.|.++|.+|.++.+....+..++... .+.... .+..
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~--------~~~~~~---~l~~----- 238 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAK--------GLPNAV---ILAG----- 238 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHH--------hcCCcc---ccCC-----
Confidence 4678888873442 344689999999999999999988755555444311 000000 0000
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEecc
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (500)
...+.++..-+. .-|++|+. .+...-+|.-+|.|+|.++..
T Consensus 239 ------------------k~sL~e~~~li~--------~a~l~I~~--DSg~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 239 ------------------KTSLEELAALIA--------GADLVIGN--DSGPMHLAAALGTPTIALYGP 279 (334)
T ss_pred ------------------CCCHHHHHHHHh--------cCCEEEcc--CChHHHHHHHcCCCEEEEECC
Confidence 223334444433 44898865 355678999999999998644
No 227
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=60.42 E-value=9.9 Score=33.45 Aligned_cols=69 Identities=13% Similarity=0.208 Sum_probs=41.1
Q ss_pred ccCCcceeEeecCchhHHHHHhcCCceeeCCcc-----------------------cchhhhHHHhhhhhcceeEeeeCC
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCAGVPMICWPFL-----------------------GDQPTNCRYTCNEWGVGLEIINGG 431 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~-----------------------~DQ~~na~~~~~~~G~g~~~~~~~ 431 (500)
..+++ +|++||......... ++|+|-+|.. ......+..+.+-+|+-+..
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~---- 105 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKI---- 105 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEE----
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEE----
Confidence 34555 999999999998877 9999999982 22333445553334554444
Q ss_pred CCCCcCHHHHHHHHHHHhCC
Q 010825 432 DDNRVSRNEVEKQVRELMGG 451 (500)
Q Consensus 432 ~~~~~~~~~l~~~i~~vl~~ 451 (500)
-..-+.+++...|.++..+
T Consensus 106 -~~~~~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 106 -YPYDSEEEIEAAIKQAKAE 124 (176)
T ss_dssp -EEESSHHHHHHHHHHHHHT
T ss_pred -EEECCHHHHHHHHHHHHHc
Confidence 3345677788777777654
No 228
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=59.97 E-value=69 Score=25.73 Aligned_cols=87 Identities=17% Similarity=0.201 Sum_probs=50.5
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHHHHHHHHHhcc
Q 010825 23 HIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVM 102 (500)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (500)
+-.-+..+++.|.+.|++| ++++...+.+.+. ++.+..+.+....+ ..+
T Consensus 11 dk~~~~~~a~~l~~~G~~i--~aT~gTa~~L~~~----------gi~~~~v~~~~~~~------~~~------------- 59 (116)
T cd01423 11 SKPELLPTAQKLSKLGYKL--YATEGTADFLLEN----------GIPVTPVAWPSEEP------QND------------- 59 (116)
T ss_pred cchhHHHHHHHHHHCCCEE--EEccHHHHHHHHc----------CCCceEeeeccCCC------CCC-------------
Confidence 4456889999999999988 3455555555543 44443332110001 000
Q ss_pred chHHHHHHHHhhcCCCCCCCCeeEEEEcCC---------cchHHHHHHHhCCCeEE
Q 010825 103 LHPFLDLLAKLNDSSNSVNPAVSCIISDGF---------LPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 103 ~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~---------~~~~~~~A~~lgiP~v~ 149 (500)
.+.+.+++++ . ++|+||.-+. .+.....|-.+|||++.
T Consensus 60 ~~~i~~~i~~---~------~idlVIn~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 60 KPSLRELLAE---G------KIDLVINLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred chhHHHHHHc---C------CceEEEECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 1223344444 2 8899998532 23456778899999973
No 229
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=59.12 E-value=21 Score=31.00 Aligned_cols=21 Identities=29% Similarity=0.302 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHHHh-CCCEEEE
Q 010825 23 HIKAMLKLAKLLHH-KGFHITF 43 (500)
Q Consensus 23 H~~p~l~La~~L~~-rGH~Vt~ 43 (500)
|.....+|+++|.+ +|.++.+
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v 22 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEV 22 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEE
Confidence 77888899999987 5544433
No 230
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=59.09 E-value=18 Score=34.00 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=41.1
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
.+..++++-.++.|-..=..+||.+|.++|+.|+|++.+.....+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 456899999999998888899999999889999999998877666553
No 231
>PRK05920 aromatic acid decarboxylase; Validated
Probab=58.80 E-value=17 Score=32.84 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=36.1
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.+||++.-.|+.+= +=...+.+.|.+.||+|.++.++...+.+..
T Consensus 3 ~krIllgITGsiaa-~ka~~lvr~L~~~g~~V~vi~T~~A~~fv~~ 47 (204)
T PRK05920 3 MKRIVLAITGASGA-IYGVRLLECLLAADYEVHLVISKAAQKVLAT 47 (204)
T ss_pred CCEEEEEEeCHHHH-HHHHHHHHHHHHCCCEEEEEEChhHHHHHHH
Confidence 46888887776555 6889999999999999999999877666543
No 232
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=58.56 E-value=42 Score=34.14 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=21.8
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|.. +-+..+|+++|||++.+
T Consensus 350 ~pDl~Ig~---s~~~~~a~~~giP~~r~ 374 (416)
T cd01980 350 RPDLAIGT---TPLVQYAKEKGIPALYY 374 (416)
T ss_pred CCCEEEeC---ChhhHHHHHhCCCEEEe
Confidence 99999988 34778999999999986
No 233
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=58.28 E-value=93 Score=34.49 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=30.7
Q ss_pred cEEEEEc--CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIP--SPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
.|++.++ .|+.|-..-...||..|+..|++|.++-.+..
T Consensus 546 ~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~ 586 (754)
T TIGR01005 546 PEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGR 586 (754)
T ss_pred ceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3444444 45778999999999999999999999976544
No 234
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=57.90 E-value=1.2e+02 Score=29.61 Aligned_cols=40 Identities=18% Similarity=0.158 Sum_probs=31.4
Q ss_pred cEEEEEcC-CCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 11 VHAVCIPS-PSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
+||++++. |+.|-..-..++|-.|++.|..|.++++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 46666664 46689888999999999999998888776543
No 235
>PRK14098 glycogen synthase; Provisional
Probab=57.73 E-value=18 Score=37.76 Aligned_cols=41 Identities=10% Similarity=0.256 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCC------cCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 8 CSKVHAVCIPSPS------QSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~------~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.+.|||++++.-. .|=-.-.-.|.++|+++||+|.++.|..
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 4459999998642 2444557789999999999999999843
No 236
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=57.51 E-value=40 Score=34.45 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||+||.+.. ...+|+++|+|++.+
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEe
Confidence 8999999964 578899999999875
No 237
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=57.50 E-value=1.1e+02 Score=28.08 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=52.9
Q ss_pred CCcEEEEEcCCCcC--cHHH--HHHHHHHHHhCCCEEEEEeCCcc--hhhhhhhcCCCCCCCCCCee--EEeCCCCCCCC
Q 010825 9 SKVHAVCIPSPSQS--HIKA--MLKLAKLLHHKGFHITFVNTEFN--HRRFLKSRGEHSLGGLPSFR--FEAIPDGLPAS 80 (500)
Q Consensus 9 ~~~~il~~~~~~~G--H~~p--~l~La~~L~~rGH~Vt~~~~~~~--~~~v~~~~~~~~~~~~~~~~--f~~l~~~~~~~ 80 (500)
++..|++.|..+.. .|.+ +..|++.|.++|.+|.++.++.. .+.+..... +.. +..+. .
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~--------~~~~~~~~~~---~-- 170 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAA--------GLQNPVINLA---G-- 170 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHT--------THTTTTEEET---T--
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHH--------hcccceEeec---C--
Confidence 44667777766553 3433 79999999999988888887665 233222210 110 00000 0
Q ss_pred CCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEeccc
Q 010825 81 SDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTIS 154 (500)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~~ 154 (500)
...+.+++.-+. .-|++|+- ....+-+|.-+|+|++.++..+
T Consensus 171 ----------------------~~~l~e~~ali~--------~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 171 ----------------------KTSLRELAALIS--------RADLVIGN--DTGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp ----------------------TS-HHHHHHHHH--------TSSEEEEE--SSHHHHHHHHTT--EEEEESSS
T ss_pred ----------------------CCCHHHHHHHHh--------cCCEEEec--CChHHHHHHHHhCCEEEEecCC
Confidence 112333344343 44999965 3557889999999999986443
No 238
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=57.41 E-value=91 Score=30.41 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=34.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
+.-|+++-.++.|-..-...||..|+.+|++|.++..+.++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 45677777778899999999999999999999999887654
No 239
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.18 E-value=52 Score=32.66 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=34.5
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
.=|+|+-.-+.|-..-+-.||..+.++|+.+.+++.+.|+.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRa 142 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRA 142 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccccc
Confidence 34556666688899999999999999999999999887764
No 240
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=57.12 E-value=41 Score=29.12 Aligned_cols=35 Identities=14% Similarity=0.261 Sum_probs=29.5
Q ss_pred EEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 14 VCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+..+-|+.|-..-...||..|+++|++|.++-.+.
T Consensus 4 v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~ 38 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38 (169)
T ss_pred EecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 34455788999999999999999999999997654
No 241
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=56.90 E-value=45 Score=34.32 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=36.7
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.=+++.--|+.|-..-++.++..++++|+.|.+++.+...+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi 137 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQI 137 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHH
Confidence 44566777788999999999999999999999999988766544
No 242
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=56.88 E-value=67 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.171 Sum_probs=34.8
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
.-|+++-.++.|-..-...||..|.++|+.|.+++.+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 4567777778899999999999999999999999987765
No 243
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=56.65 E-value=1.4e+02 Score=26.21 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=30.1
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEE
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFV 44 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (500)
+--|.+++..+.|-..-.+.+|-+.+.+|+.|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 34677778899999999999999999999999765
No 244
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=56.55 E-value=25 Score=28.70 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=35.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
||++.+.++..|-.-..-++.-|...|++|.+.......+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e 40 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPE 40 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHH
Confidence 6899999999999999999999999999999998754433
No 245
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=56.40 E-value=36 Score=34.00 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=35.8
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.=+++.-.|+.|-..-++.++..++.+|..|.+++.+...+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi 125 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQI 125 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHH
Confidence 34566667778899999999999999999999999987665543
No 246
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=56.36 E-value=1.2e+02 Score=25.58 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=31.1
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|.+.-.++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 566777888999999999999999999999987653
No 247
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=56.31 E-value=1.1e+02 Score=33.62 Aligned_cols=40 Identities=10% Similarity=0.239 Sum_probs=31.4
Q ss_pred CcEEEEEcCC--CcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPSP--SQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+.|+++++.. +.|-..-...||..|+..|++|.++-.+..
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 4456666554 667888899999999999999999976544
No 248
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=56.27 E-value=2e+02 Score=27.89 Aligned_cols=80 Identities=21% Similarity=0.231 Sum_probs=59.2
Q ss_pred cCcee-eeccch---hHhhccCCcceeEee--cCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC
Q 010825 360 EKGFI-ASWCPQ---EEVLNHPAIGGFFTH--SGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD 433 (500)
Q Consensus 360 ~nv~~-~~~~pq---~~lL~~~~~~~~I~H--gG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~ 433 (500)
+++.+ .+++|. .++|..||++.|+|+ =|.||+.-.++.|+|+++-- +-+.|.... +.|+-+-. +
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqdl~--e~gv~Vlf-----~ 275 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQDLT--EQGLPVLF-----T 275 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHHHH--hCCCeEEe-----c
Confidence 57765 777774 569999999888876 48999999999999998832 233444433 47888876 5
Q ss_pred -CCcCHHHHHHHHHHHh
Q 010825 434 -NRVSRNEVEKQVRELM 449 (500)
Q Consensus 434 -~~~~~~~l~~~i~~vl 449 (500)
..++...+.++=+++.
T Consensus 276 ~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 276 GDDLDEDIVREAQRQLA 292 (322)
T ss_pred CCcccHHHHHHHHHHHH
Confidence 6788888877755544
No 249
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=56.09 E-value=1.3e+02 Score=26.73 Aligned_cols=42 Identities=21% Similarity=0.066 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC
Q 010825 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP 74 (500)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~ 74 (500)
...-.|+..|+++||+||+.+.......- ...+.+.+...+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~--------~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYK--------EFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCC--------CcccCCeEEEEeC
Confidence 44567888888999999999876543211 1223467777765
No 250
>PRK05636 replicative DNA helicase; Provisional
Probab=55.75 E-value=29 Score=36.28 Aligned_cols=44 Identities=7% Similarity=0.085 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHH-hCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~v 53 (500)
+-=|++...|+.|-....+.+|...+ +.|..|.|++.+.....+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql 309 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEI 309 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHH
Confidence 34467788899999999999998876 469999999988776543
No 251
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=55.36 E-value=57 Score=28.61 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIG 380 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 380 (500)
.+.+-.+.+|.+. +.++..++..+.+++..-.... +.. ........+.+..++|+.+|+
T Consensus 36 g~tvgIiG~G~IG-------~~vA~~l~~fG~~V~~~d~~~~--------~~~-----~~~~~~~~~~~l~ell~~aDi- 94 (178)
T PF02826_consen 36 GKTVGIIGYGRIG-------RAVARRLKAFGMRVIGYDRSPK--------PEE-----GADEFGVEYVSLDELLAQADI- 94 (178)
T ss_dssp TSEEEEESTSHHH-------HHHHHHHHHTT-EEEEEESSCH--------HHH-----HHHHTTEEESSHHHHHHH-SE-
T ss_pred CCEEEEEEEcCCc-------CeEeeeeecCCceeEEecccCC--------hhh-----hcccccceeeehhhhcchhhh-
Confidence 3568889999987 6677777888888766544321 110 001122367788999999998
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCcc--cchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFL--GDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
++.|+ |.. ..+..|+..+ +.++=|..+.|-.+...+++++|.+++++
T Consensus 95 -v~~~~------------------plt~~T~~li~~~~l-~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 95 -VSLHL------------------PLTPETRGLINAEFL-AKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp -EEE-S------------------SSSTTTTTSBSHHHH-HTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred -hhhhh------------------ccccccceeeeeeee-eccccceEEEeccchhhhhhhHHHHHHhh
Confidence 76555 543 3578889999 67888877767666678999999888753
No 252
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=55.31 E-value=52 Score=30.02 Aligned_cols=47 Identities=15% Similarity=0.082 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
++.-+++.-.|+.|-....+.++..-+++|+.|.+++.+...+.+.+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~ 61 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILG 61 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 34566777777889888889998888888999999999887665544
No 253
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=54.92 E-value=31 Score=31.46 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=38.4
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
.+.+|++.+.++..|-....-++..|..+|++|.++...-..+.
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~ 130 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEK 130 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHH
Confidence 46799999999999999999999999999999999987554443
No 254
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=54.84 E-value=74 Score=28.18 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC--CCCCCC
Q 010825 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP--DGLPAS 80 (500)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~--~~~~~~ 80 (500)
.-+..+|+.|.+.|+++ ++++...+.+.+. ++.+..+. .++|+.
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L~e~----------GI~v~~V~k~TgfpE~ 56 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFLKEA----------GIPVTDVSDITGFPEI 56 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHHHHc----------CCeEEEhhhccCCcHh
Confidence 44789999999999998 3555666677665 56665554 244444
No 255
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=54.52 E-value=34 Score=30.37 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=49.5
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCc-chhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEF-NHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~-~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (500)
.++-+=..+.|-+.-...|+++|.++ |+.|.+-+... ..+.+.+..++ .+....+| .
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~-------~v~~~~~P----~--------- 81 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD-------RVDVQYLP----L--------- 81 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG-------G-SEEE----------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC-------CeEEEEeC----c---------
Confidence 33444457889999999999999987 89888876533 33334332110 12222222 1
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEe
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~ 151 (500)
|. ...++.+++.+ +||++|.-.... ..+..|++.|||++.+.
T Consensus 82 D~------------~~~~~rfl~~~---------~P~~~i~~EtElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 82 DF------------PWAVRRFLDHW---------RPDLLIWVETELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp SS------------HHHHHHHHHHH-----------SEEEEES----HHHHHH-----S-EEEEE
T ss_pred cC------------HHHHHHHHHHh---------CCCEEEEEccccCHHHHHHHhhcCCCEEEEe
Confidence 11 22345667887 888888544333 45667889999999973
No 256
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=54.35 E-value=39 Score=26.13 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 27 MLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
++.+|+.|.+.|++ +++++...+.+.+.
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L~~~ 29 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFLKEH 29 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHHHHc
Confidence 57899999999965 55666666777665
No 257
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=53.78 E-value=18 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.114 Sum_probs=32.5
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
+||++.-.++.|= .-...+.+.|.++|++|.++.++...+.+.
T Consensus 1 k~I~lgvtGs~~a-~~~~~ll~~L~~~g~~V~vi~T~~A~~fi~ 43 (177)
T TIGR02113 1 KKILLAVTGSIAA-YKAADLTSQLTKLGYDVTVLMTQAATQFIT 43 (177)
T ss_pred CEEEEEEcCHHHH-HHHHHHHHHHHHCCCEEEEEEChHHHhhcc
Confidence 3677777776654 455699999999999999999877655543
No 258
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=53.78 E-value=83 Score=32.10 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.1
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHH-hCCCEEEEEeCCcchhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLH-HKGFHITFVNTEFNHRR 52 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~-~rGH~Vt~~~~~~~~~~ 52 (500)
.-|+++..++.|-..-...||..|. ++|+.|.+++.+.++..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~ 142 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPA 142 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchH
Confidence 4567777778899999999999997 68999999998876543
No 259
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=53.58 E-value=1.1e+02 Score=24.20 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=52.2
Q ss_pred CcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHHHHHHHHHhc
Q 010825 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNV 101 (500)
Q Consensus 22 GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (500)
++-.-++.+++.|.+.|+++. +++...+.+.+. ++.+..+.... ..
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l~--aT~gT~~~l~~~----------gi~~~~v~~~~-~~--------------------- 55 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKLV--ATEGTAKYLQEA----------GIPVEVVNKVS-EG--------------------- 55 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEEE--EchHHHHHHHHc----------CCeEEEEeecC-CC---------------------
Confidence 455678899999999999983 444555555553 55544332110 11
Q ss_pred cchHHHHHHHHhhcCCCCCCCCeeEEEEcCC-------cchHHHHHHHhCCCeEE
Q 010825 102 MLHPFLDLLAKLNDSSNSVNPAVSCIISDGF-------LPFTVTAAQQLGLPIVL 149 (500)
Q Consensus 102 ~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~-------~~~~~~~A~~lgiP~v~ 149 (500)
.+.+.+++++ . ++|+||.-+. .+.....|-.+|||++.
T Consensus 56 -~~~i~~~i~~---~------~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 56 -RPNIVDLIKN---G------EIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred -chhHHHHHHc---C------CeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 2333344443 2 8999998432 23566778999999995
No 260
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.40 E-value=1.2e+02 Score=30.93 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=21.8
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|.... ...+|+++|||++.+
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 8999999863 678999999999876
No 261
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=53.04 E-value=21 Score=31.67 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=35.9
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHh-CCCEEEEEeCCcchhhhhh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHH-KGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~-rGH~Vt~~~~~~~~~~v~~ 55 (500)
+||++.-.|+.+ .+=...|.++|.+ .||+|.++.++...+.+..
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv~~ 46 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTLAH 46 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHHHH
Confidence 378888888777 5568999999999 5999999999887766654
No 262
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=52.39 E-value=18 Score=32.01 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=32.8
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
||++...|+.|-+.- ..+.+.|.++|++|.++.++...+.+.
T Consensus 1 ~illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv~ 42 (181)
T TIGR00421 1 RIVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETIK 42 (181)
T ss_pred CEEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHHH
Confidence 456666666666655 889999999999999999987776654
No 263
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=52.10 E-value=71 Score=31.17 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=24.2
Q ss_pred CeeEEEE-cCCcc-hHHHHHHHhCCCeEEEeccch
Q 010825 123 AVSCIIS-DGFLP-FTVTAAQQLGLPIVLLFTISA 155 (500)
Q Consensus 123 ~pDlvI~-D~~~~-~~~~~A~~lgiP~v~~~~~~~ 155 (500)
.||+||+ |+..- .+..=|.++|||+|.+.-+..
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~ 186 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNC 186 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCC
Confidence 6998885 44332 577779999999999865533
No 264
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=52.06 E-value=47 Score=30.70 Aligned_cols=94 Identities=11% Similarity=0.078 Sum_probs=52.3
Q ss_pred CCceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcC-----ceeeec--cch
Q 010825 301 PNSVIYVNFGSII---IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEK-----GFIASW--CPQ 370 (500)
Q Consensus 301 ~~~vV~vs~Gs~~---~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~n-----v~~~~~--~pq 370 (500)
+++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..+.... -....+...+. +.+.+- +.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~e 176 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-------EKEIADQIAAGLQNPVINLAGKTSLRE 176 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-------HHHHHHHHHTTHTTTTEEETTTS-HHH
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-------HHHHHHHHHHhcccceEeecCCCCHHH
Confidence 4567888888863 567888999999998877665544432210 00111112211 223222 333
Q ss_pred -hHhhccCCcceeEeecCchhHHHHHhcCCceeeC
Q 010825 371 -EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICW 404 (500)
Q Consensus 371 -~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 404 (500)
.+++.++++ ||+. -.|.++=|.+.|+|+|++
T Consensus 177 ~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 177 LAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 468999997 8864 457889999999999997
No 265
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=51.88 E-value=11 Score=32.37 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.8
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
||.++-.|..|+ ++|..|+++||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEeccH
Confidence 466666666664 78999999999999999864
No 266
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=51.77 E-value=1.4e+02 Score=26.79 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCC--CEEEEEeCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKG--FHITFVNTE 47 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rG--H~Vt~~~~~ 47 (500)
+||+++..+..+=+. +|.+.+.+.+ ++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 589999987744443 5566676654 778776443
No 267
>PRK12342 hypothetical protein; Provisional
Probab=51.67 E-value=27 Score=32.76 Aligned_cols=31 Identities=10% Similarity=0.086 Sum_probs=24.3
Q ss_pred CeeEEEEcCCcc------hHHHHHHHhCCCeEEEecc
Q 010825 123 AVSCIISDGFLP------FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 123 ~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (500)
+||+|++...+. -+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 799999765443 3789999999999987433
No 268
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=51.59 E-value=1.8e+02 Score=25.95 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=57.3
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEe---CC-cc-hhh-hhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVN---TE-FN-HRR-FLKSRGEHSLGGLPSFRFEAIPDGLPASSDES 84 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~---~~-~~-~~~-v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 84 (500)
-=|.+++..+.|-....+-+|-+-.-+|.+|.++- .. .+ ... +... ..++.|..+++++... ..
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~--------~~~v~~~~~~~g~tw~--~~ 98 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF--------GLGVEFHGMGEGFTWE--TQ 98 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh--------ccceeEEecCCceeCC--Cc
Confidence 34777888888988777766666666777777764 11 11 111 2221 1258888888777666 12
Q ss_pred CccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010825 85 STTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (500)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~ 134 (500)
....+. ..+ ....+...+.+.. +++|+||.|-+++
T Consensus 99 ~~~~d~--------~aa-~~~w~~a~~~l~~------~~ydlviLDEl~~ 133 (198)
T COG2109 99 DREADI--------AAA-KAGWEHAKEALAD------GKYDLVILDELNY 133 (198)
T ss_pred CcHHHH--------HHH-HHHHHHHHHHHhC------CCCCEEEEehhhH
Confidence 122221 222 3333444444443 3999999998776
No 269
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=51.43 E-value=1.8e+02 Score=26.72 Aligned_cols=48 Identities=8% Similarity=-0.099 Sum_probs=38.5
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
+++.-+++.-.|+.|-..-.+.++.+-+++|..|.+++.+...+.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~ 66 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRR 66 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHH
Confidence 345678888888999999999988877789999999998876655433
No 270
>PRK07773 replicative DNA helicase; Validated
Probab=50.46 E-value=71 Score=36.15 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=37.4
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~v~~ 55 (500)
+-=|++...|+.|-....+.+|...+.+ |..|.|++.+...+.+..
T Consensus 217 G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~ 263 (886)
T PRK07773 217 GQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVM 263 (886)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHH
Confidence 3347778889999999999999999855 899999999887765433
No 271
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=50.41 E-value=23 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 24 IKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 24 ~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-.-.-.|+++|+++||+|++++|..
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3456789999999999999999855
No 272
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=50.25 E-value=1.7e+02 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.115 Sum_probs=30.3
Q ss_pred cEEEEEcCCCcC----cHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 11 VHAVCIPSPSQS----HIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 11 ~~il~~~~~~~G----H~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.-|++.|..+.. ...-+..|++.|.++|++|.+++.+...+..+.
T Consensus 122 ~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~ 170 (279)
T cd03789 122 PVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEE 170 (279)
T ss_pred CEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHH
Confidence 346666554432 334689999999999999998887665544433
No 273
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=49.48 E-value=1.1e+02 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=25.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
|+.++..+.. .+.+++-|.+-|-+|..+++.
T Consensus 287 kv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~ 317 (422)
T TIGR02015 287 RVTVSGYEGS-----ELLVVRLLLESGADVPYVGTA 317 (422)
T ss_pred eEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecC
Confidence 7777776665 788889999999999988665
No 274
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.41 E-value=37 Score=28.55 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
.+.||++.+.+.-||=.-..-+++.|++.|.+|.....-..
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~t 51 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQT 51 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCC
Confidence 58899999999999999999999999999999988765433
No 275
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=49.05 E-value=22 Score=35.78 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=24.1
Q ss_pred CcCcHHHHHHHHHHHHhCCCEEEEE-eCCcc
Q 010825 20 SQSHIKAMLKLAKLLHHKGFHITFV-NTEFN 49 (500)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~-~~~~~ 49 (500)
+.|-..-.+.|.++|++||+.|.=+ +.+++
T Consensus 11 G~GKTTvT~glm~aL~~rg~~VqpfKvGPDY 41 (451)
T COG1797 11 GSGKTTVTLGLMRALRRRGLKVQPFKVGPDY 41 (451)
T ss_pred CCcHHHHHHHHHHHHHhcCCcccccccCCCc
Confidence 4579999999999999999999765 33344
No 276
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=48.69 E-value=1.5e+02 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=21.7
Q ss_pred ceeEeecCch------hHHHHHhcCCceeeCC
Q 010825 380 GGFFTHSGWN------STIESLCAGVPMICWP 405 (500)
Q Consensus 380 ~~~I~HgG~~------s~~eal~~GvP~v~~P 405 (500)
+.+++|+|-| .+.+|...++|+|++.
T Consensus 65 ~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 65 GVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred EEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 3488888855 7889999999999986
No 277
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=48.62 E-value=32 Score=33.04 Aligned_cols=39 Identities=5% Similarity=0.058 Sum_probs=34.9
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
|||+++--|+.|-..-...||..|+++|++|.++-.+..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 579999999999999999999999999999999876443
No 278
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=48.00 E-value=21 Score=36.60 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=56.1
Q ss_pred cCcHHHHHHHHHHHHh--------CCCE----EEEEe---CCc----chhhhhhhcCCCCCCCCCCeeEEeCCCCCCCC-
Q 010825 21 QSHIKAMLKLAKLLHH--------KGFH----ITFVN---TEF----NHRRFLKSRGEHSLGGLPSFRFEAIPDGLPAS- 80 (500)
Q Consensus 21 ~GH~~p~l~La~~L~~--------rGH~----Vt~~~---~~~----~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~- 80 (500)
.|.+--.+.+|++|.+ .|.+ |.+++ ++. +.+.+++. ...++..+..+|-+-..+
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~------~gt~~a~IlRvPF~~~~gi 369 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKV------SGTENARILRVPFGPEKGI 369 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEE------TTESSEEEEEE-ESESTEE
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCcccccccc------CCCCCcEEEEecCCCCcch
Confidence 4678888999998865 3554 55554 221 11122221 223345666665222211
Q ss_pred CCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCc--chHHHHHHHhCCCeEEEecc
Q 010825 81 SDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFL--PFTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~ 153 (500)
...+-...++..+++.+.... ...+.+++. .+||+|+..... ..|.++++++|||.+.+-++
T Consensus 370 ~~kwisrf~lWPyLe~fa~d~----~~~i~~e~~-------~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 370 LRKWISRFDLWPYLEEFADDA----EREILAELQ-------GKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp E-S---GGG-GGGHHHHHHHH----HHHHHHHHT-------S--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred hhhccchhhchhhHHHHHHHH----HHHHHHHhC-------CCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 001222233444455443333 234445553 389999976433 25788999999999987444
No 279
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.18 E-value=91 Score=31.91 Aligned_cols=88 Identities=19% Similarity=0.265 Sum_probs=54.0
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQ 88 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 88 (500)
.++|++++..+ .....+++-|.+-|-+|..+......+.... ++ .. .....
T Consensus 310 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~-----------------~~----~~---~~~~~ 360 (432)
T TIGR01285 310 GGKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQK-----------------LP----VE---TVVIG 360 (432)
T ss_pred CCCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHh-----------------CC----cC---cEEeC
Confidence 36788777533 3668888888899999988776544322111 00 00 00001
Q ss_pred cHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 89 DMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
|+ ..+++++++. ++|++|.... +..+|+++|||++.+
T Consensus 361 D~-------------~~l~~~i~~~---------~~dliig~s~---~k~~A~~l~ip~ir~ 397 (432)
T TIGR01285 361 DL-------------EDLEDLACAA---------GADLLITNSH---GRALAQRLALPLVRA 397 (432)
T ss_pred CH-------------HHHHHHHhhc---------CCCEEEECcc---hHHHHHHcCCCEEEe
Confidence 21 1223445543 8999998853 578999999999975
No 280
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=47.02 E-value=97 Score=29.59 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=32.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC-C-CEEEEEeCCcch
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK-G-FHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r-G-H~Vt~~~~~~~~ 50 (500)
..|+|+-..+.|-..-...||..++.+ | +.|.+++.+.++
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 356666666779999999999999887 5 999999987754
No 281
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=46.58 E-value=33 Score=32.31 Aligned_cols=38 Identities=8% Similarity=0.038 Sum_probs=33.5
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|.|+++--|+.|...-...||..|+++|++|.++-.+.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dp 38 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDP 38 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCC
Confidence 56888888899999999999999999999999986543
No 282
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=46.54 E-value=34 Score=32.24 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=32.6
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
|+|+++--|+.|-..-...||..|+++|++|.++--+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5688888888999999999999999999999998543
No 283
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.37 E-value=53 Score=27.43 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=37.6
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.+|++-+..+-+|-.--.-++..|.+.|++|.........+.+
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~ 44 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEF 44 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 35899999999999999999999999999999999876554443
No 284
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.76 E-value=98 Score=26.68 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.7
Q ss_pred ceeEeecCch------hHHHHHhcCCceeeCC
Q 010825 380 GGFFTHSGWN------STIESLCAGVPMICWP 405 (500)
Q Consensus 380 ~~~I~HgG~~------s~~eal~~GvP~v~~P 405 (500)
+.+++|+|-| .+.+|...++|+|++.
T Consensus 61 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 61 GALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred EEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 3377777744 6788999999999985
No 285
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=45.74 E-value=34 Score=30.05 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=30.6
Q ss_pred EEEEEcCCCcCcHHH-HHHHHHHHHh-CCCEEEEEeCCcchhhhh
Q 010825 12 HAVCIPSPSQSHIKA-MLKLAKLLHH-KGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 12 ~il~~~~~~~GH~~p-~l~La~~L~~-rGH~Vt~~~~~~~~~~v~ 54 (500)
||++.-.++ ||... ...+.++|.+ +||+|.++.++...+.+.
T Consensus 1 ~i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~vi~ 44 (174)
T TIGR02699 1 RIAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQVVK 44 (174)
T ss_pred CEEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHHHHH
Confidence 345555454 77766 8899999984 699999999977665443
No 286
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=45.39 E-value=19 Score=36.95 Aligned_cols=58 Identities=17% Similarity=0.289 Sum_probs=39.9
Q ss_pred hHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHH---HHHHHHHHHhCCChhHHHHHHHH
Q 010825 390 STIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRN---EVEKQVRELMGGEKGKQMRNKAS 462 (500)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~---~l~~~i~~vl~~~~~~~~~~~a~ 462 (500)
++.||+++|+|+++. ++..-+.-+ ...--|..+ +. +++ .+.+++.++..|++ ++.++.
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV-~~~~tG~l~-----dp--~~e~~~~~a~~~~kl~~~p~---l~~~~~ 441 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIV-VHGVTGLLI-----DP--GQEAVAELADALLKLRRDPE---LWARMG 441 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEE-EcCCcceee-----CC--chHHHHHHHHHHHHHhcCHH---HHHHHH
Confidence 688999999999983 344444444 334455555 53 444 79999999999987 544443
No 287
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=45.29 E-value=30 Score=34.76 Aligned_cols=46 Identities=11% Similarity=0.085 Sum_probs=36.5
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.++||++...|+.+= .-...+.+.|.+.|++|.++.++...+.+..
T Consensus 2 ~~k~IllgiTGSiaa-~~~~~ll~~L~~~g~~V~vv~T~~A~~fv~~ 47 (390)
T TIGR00521 2 ENKKILLGVTGGIAA-YKTVELVRELVRQGAEVKVIMTEAAKKFITP 47 (390)
T ss_pred CCCEEEEEEeCHHHH-HHHHHHHHHHHhCCCEEEEEECHhHHHHHHH
Confidence 367888888776665 5589999999999999999999776665543
No 288
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=45.01 E-value=21 Score=31.51 Aligned_cols=36 Identities=11% Similarity=0.137 Sum_probs=25.7
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
|||+++. +.|++ -..|+++...|||+||.+.-...+
T Consensus 1 mKIaiIg--AsG~~--Gs~i~~EA~~RGHeVTAivRn~~K 36 (211)
T COG2910 1 MKIAIIG--ASGKA--GSRILKEALKRGHEVTAIVRNASK 36 (211)
T ss_pred CeEEEEe--cCchh--HHHHHHHHHhCCCeeEEEEeChHh
Confidence 4666654 34433 357899999999999999875543
No 289
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=44.62 E-value=35 Score=31.60 Aligned_cols=44 Identities=5% Similarity=-0.037 Sum_probs=32.8
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCcchhhhhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~~~~~v~~ 55 (500)
||++.-.|+.+=+.-...|.+.|.++ ||+|.++.++...+.+..
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i~~ 46 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSRAGEEVVRM 46 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHHhh
Confidence 35555555555557899999999999 999999999776655443
No 290
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=44.43 E-value=40 Score=34.03 Aligned_cols=47 Identities=19% Similarity=0.086 Sum_probs=37.4
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.+++||++...|+. ..+-...+.+.|.+.|++|.++.++...+.+..
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~fi~~ 50 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKFVTP 50 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHHHhH
Confidence 45678998888876 455778999999999999999999876665543
No 291
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=44.37 E-value=1.1e+02 Score=29.35 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCEEEEEeCCcch
Q 010825 28 LKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 28 l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
.++|..++++|++|.++..+...
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCCC
Confidence 46888999999999999986543
No 292
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=44.31 E-value=41 Score=33.67 Aligned_cols=71 Identities=23% Similarity=0.327 Sum_probs=49.8
Q ss_pred cceeEeecCchhHHHHHhc-----------------CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHH
Q 010825 379 IGGFFTHSGWNSTIESLCA-----------------GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEV 441 (500)
Q Consensus 379 ~~~~I~HgG~~s~~eal~~-----------------GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l 441 (500)
..+++|.||..+..-|+.+ +.|++.++-.. |+-+.+-+ .-+|+|++.+.-+++..++.++|
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa-~~lGlg~~~I~~~~~~~md~~~L 181 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAA-RILGLGVRKIPTDEDGRMDIEAL 181 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHH-HHTTSEEEEE-BBTTSSB-HHHH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhc-ceeeeEEEEecCCcchhhhHHHh
Confidence 4689999998888777533 24566665544 45555555 67899988866666678999999
Q ss_pred HHHHHHHhCC
Q 010825 442 EKQVRELMGG 451 (500)
Q Consensus 442 ~~~i~~vl~~ 451 (500)
.++|.+...+
T Consensus 182 ~~~l~~~~~~ 191 (373)
T PF00282_consen 182 EKALEKDIAN 191 (373)
T ss_dssp HHHHHHHHHT
T ss_pred hhhhcccccc
Confidence 9999887654
No 293
>PRK09620 hypothetical protein; Provisional
Probab=44.08 E-value=38 Score=31.21 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCcCcHHH------------HHHHHHHHHhCCCEEEEEeCC
Q 010825 9 SKVHAVCIPSPSQSHIKA------------MLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGH~Vt~~~~~ 47 (500)
.+++|++...|++=.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 467888777765544433 468999999999999999754
No 294
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=43.54 E-value=2.1e+02 Score=25.43 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=22.0
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCC--EEEEEeCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGF--HITFVNTE 47 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH--~Vt~~~~~ 47 (500)
+||+++..+..+-+. ++.+.+.+.++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEEC
Confidence 478888876665544 55666766655 67765443
No 295
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=43.48 E-value=36 Score=28.29 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 22 GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
..+.-.+-++..|.++||+|++.+++.....++-.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npAA~kLl~va 45 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPAALKLLEVA 45 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHHHHhHhhhc
Confidence 45566788999999999999999998877776554
No 296
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=43.12 E-value=2.2e+02 Score=29.35 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=20.7
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|... ....+|+++|||++.+
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 899999863 3577889999999875
No 297
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=42.89 E-value=45 Score=30.93 Aligned_cols=44 Identities=11% Similarity=0.031 Sum_probs=28.9
Q ss_pred cccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 3 SKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 3 ~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
++......++|+++.--.-==..-+-.....|+++||+|++++-
T Consensus 3 ~~~~~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~l 46 (237)
T COG2120 3 SLPPMLDPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCL 46 (237)
T ss_pred CccccccCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEc
Confidence 34444555677666543333345566777788999999999874
No 298
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=42.76 E-value=63 Score=31.99 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=54.3
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCch-HHHH-Hhhc-Cce--------------ee
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPA-EFEV-KAKE-KGF--------------IA 365 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~-~~~~-nv~--------------~~ 365 (500)
.+++.+-||-....+.. .+++.+++.++++.|+.+....+.. .+|. ++.- .++. .+. +.
T Consensus 3 ~i~~~~GGTGGHi~Pal--a~a~~l~~~g~~v~~vg~~~~~e~~--l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNL--AIIPYLKEDNWDISYIGSHQGIEKT--IIEKENIPYYSISSGKLRRYFDLKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHHHH--HHHHHHHhCCCEEEEEECCCccccc--cCcccCCcEEEEeccCcCCCchHHHHHHHHHHHH
Confidence 46777778876544443 2556666678899988765543321 1111 1100 0000 000 00
Q ss_pred eccchhHhhc--cCCcceeEeecCchh---HHHHHhcCCceeeC
Q 010825 366 SWCPQEEVLN--HPAIGGFFTHSGWNS---TIESLCAGVPMICW 404 (500)
Q Consensus 366 ~~~pq~~lL~--~~~~~~~I~HgG~~s---~~eal~~GvP~v~~ 404 (500)
.++--..+++ +|++ +|++||.-| +..|...|+|+++.
T Consensus 79 ~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 79 GVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEEE
Confidence 1111112444 5777 999999997 89999999999873
No 299
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.74 E-value=52 Score=30.27 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=36.7
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
++.-+++.-.++.|-......++...+++|..|.|++.+...+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~ 68 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSY 68 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHH
Confidence 455677777888899999999998888899999999987665443
No 300
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.54 E-value=2.2e+02 Score=26.81 Aligned_cols=44 Identities=11% Similarity=0.200 Sum_probs=33.2
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEecc
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (500)
..+.++++.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 204 ~~l~~l~~~ik~~------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~ 249 (266)
T cd01018 204 ADLKRLIDLAKEK------GVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPL 249 (266)
T ss_pred HHHHHHHHHHHHc------CCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCc
Confidence 3455666666655 899999998665 4668999999999887544
No 301
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=42.46 E-value=32 Score=31.69 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCEEEEEeC
Q 010825 27 MLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~ 46 (500)
-.+||++|.++||+|+++..
T Consensus 29 G~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHHhCCCEEEEEEC
Confidence 46889999999999999974
No 302
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=41.95 E-value=81 Score=25.69 Aligned_cols=21 Identities=14% Similarity=0.091 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhCCCEEEEEeC
Q 010825 26 AMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 26 p~l~La~~L~~rGH~Vt~~~~ 46 (500)
.+-.+...+.++|++|++++-
T Consensus 13 ~~gg~i~~~~~~g~~v~vv~~ 33 (128)
T PF02585_consen 13 GCGGTIAKLAEAGHRVVVVTL 33 (128)
T ss_dssp HHHHHHHHHHHTT-EEEEEEC
T ss_pred hhHHHHHHHHhcCCeEEEEEe
Confidence 344555678889999998874
No 303
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=41.94 E-value=1.3e+02 Score=29.61 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGF-HITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~ 48 (500)
-+++||+++-.++.| ..+|+.|++.|+ +++++-.+.
T Consensus 22 L~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 22 IREKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCCc
Confidence 456789999888776 678999999998 777776543
No 304
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=41.93 E-value=44 Score=31.42 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=24.0
Q ss_pred CeeEEEEcCCcc------hHHHHHHHhCCCeEEEecc
Q 010825 123 AVSCIISDGFLP------FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 123 ~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (500)
.||+||+-.-+. -+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 799999754332 4788999999999987543
No 305
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=41.55 E-value=53 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.513 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHhCC-ChhHHHHHHHHHH
Q 010825 437 SRNEVEKQVRELMGG-EKGKQMRNKASKW 464 (500)
Q Consensus 437 ~~~~l~~~i~~vl~~-~~~~~~~~~a~~l 464 (500)
++++|..||..+.++ -+ +++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~~S---~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMS---IRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTSS----HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCC---HHHHHHHH
Confidence 578999999999987 55 77666653
No 306
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=41.55 E-value=3.4e+02 Score=29.74 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=29.1
Q ss_pred EEEEEcCCC-cCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 12 HAVCIPSPS-QSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 12 ~il~~~~~~-~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
.|.+.+..+ .|-..-.+.|++.|.++|.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCC
Confidence 466665544 58999999999999999999999876
No 307
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=41.47 E-value=1.1e+02 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc------hHHHHHHHhCCCeEEE
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP------FTVTAAQQLGLPIVLL 150 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~------~~~~~A~~lgiP~v~~ 150 (500)
+.+.+++++. +.|++|=-+.=+ -+..+|+..|||++.|
T Consensus 56 e~l~~~l~e~---------~i~llIDATHPyAa~iS~Na~~aake~gipy~r~ 99 (257)
T COG2099 56 EGLAAFLREE---------GIDLLIDATHPYAARISQNAARAAKETGIPYLRL 99 (257)
T ss_pred HHHHHHHHHc---------CCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEE
Confidence 4445666653 888887332212 2467899999999997
No 308
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.46 E-value=2.4e+02 Score=24.54 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcc-hhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCCccccHHHHHHHHHHhccc
Q 010825 25 KAMLKLAKLLHHKGFHITFVNTEFN-HRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESSTTQDMYSLCESIMNNVML 103 (500)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~-~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (500)
.-+..|.+...++|..|.+++...- .+.+.+.. ...+|++++....++.-. .
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l----~~~yP~l~ivg~~~g~f~-----------------------~ 87 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANL----RRRYPGLRIVGYHHGYFD-----------------------E 87 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH----HHHCCCeEEEEecCCCCC-----------------------h
Confidence 3455666677778999999987542 22222211 123567777765432211 2
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHHHHhCCCeEE
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP----FTVTAAQQLGLPIVL 149 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~----~~~~~A~~lgiP~v~ 149 (500)
...+++++.+..+ +||+|++-.-++ |.....+.++.++++
T Consensus 88 ~~~~~i~~~I~~~------~pdiv~vglG~PkQE~~~~~~~~~l~~~v~i 131 (172)
T PF03808_consen 88 EEEEAIINRINAS------GPDIVFVGLGAPKQERWIARHRQRLPAGVII 131 (172)
T ss_pred hhHHHHHHHHHHc------CCCEEEEECCCCHHHHHHHHHHHHCCCCEEE
Confidence 2334555555555 999999998776 677777888888333
No 309
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=41.40 E-value=84 Score=29.71 Aligned_cols=46 Identities=9% Similarity=0.198 Sum_probs=33.1
Q ss_pred cEEEEEc--CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 11 VHAVCIP--SPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 11 ~~il~~~--~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
.|++.+. -|+.|--.-...||.+|++.|.+|-++--+-....+...
T Consensus 57 ~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~ 104 (265)
T COG0489 57 KNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRM 104 (265)
T ss_pred ceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHH
Confidence 3444443 446688888999999999999999999765554444443
No 310
>PRK13604 luxD acyl transferase; Provisional
Probab=41.02 E-value=61 Score=31.34 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEe
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVN 45 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (500)
++.+.++++++..++-..+..+|+.|+++|+.|..+-
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 3457788888888887779999999999999998764
No 311
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.81 E-value=55 Score=30.94 Aligned_cols=54 Identities=19% Similarity=0.186 Sum_probs=36.7
Q ss_pred cCCcceeEeecCchhHHHHHh------cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHh
Q 010825 376 HPAIGGFFTHSGWNSTIESLC------AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 376 ~~~~~~~I~HgG~~s~~eal~------~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl 449 (500)
.+++ +|+-||-||+..+++ .++|++.+-. -++|. . ...+++++.+++.+++
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~------------G~lGF--L-------~~~~~~~~~~~l~~i~ 91 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT------------GHLGF--Y-------TDWRPFEVDKLVIALA 91 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC------------CCcee--c-------ccCCHHHHHHHHHHHH
Confidence 3455 999999999999986 4788877442 01111 1 2456777888888888
Q ss_pred CCC
Q 010825 450 GGE 452 (500)
Q Consensus 450 ~~~ 452 (500)
+++
T Consensus 92 ~g~ 94 (265)
T PRK04885 92 KDP 94 (265)
T ss_pred cCC
Confidence 754
No 312
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=40.75 E-value=1.2e+02 Score=31.40 Aligned_cols=86 Identities=9% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCC--CCCCCCCCCCCccccHHH-HHH-HHHHh
Q 010825 25 KAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIP--DGLPASSDESSTTQDMYS-LCE-SIMNN 100 (500)
Q Consensus 25 ~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 100 (500)
.-+..+++.|.+.|+++ +++....+.+.+. ++.+..+. .++|+.. ...-+.+.+ ... .+.+.
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L~e~----------GI~v~~Vsk~TgfPEil--~GRVKTLHP~IhgGiLarr 76 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLLAEA----------GVPVTEVSDYTGFPEMM--DGRVKTLHPKVHGGILARR 76 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHHHHC----------CCeEEEeecccCCchhh--CCccccCCchhhhhhhcCC
Confidence 44678999999999998 3565666666665 56665554 2455441 111222221 222 22333
Q ss_pred ccchHHHHHHHHhhcCCCCCCCCeeEEEEcCC
Q 010825 101 VMLHPFLDLLAKLNDSSNSVNPAVSCIISDGF 132 (500)
Q Consensus 101 ~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~ 132 (500)
- .+.+++ +++..= ...|+||++.+
T Consensus 77 ~-~~~~~~-l~~~~I------~~IDlVvvNLY 100 (511)
T TIGR00355 77 G-DDDDAD-LEEHGI------EPIDLVVVNLY 100 (511)
T ss_pred C-chHHHH-HHHcCC------CceeEEEEecc
Confidence 3 333222 333322 27899999853
No 313
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.44 E-value=69 Score=33.25 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=21.2
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|.. .....+|+++|||++..
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~~ 417 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLDI 417 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEEc
Confidence 89999997 45778999999999843
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=40.32 E-value=3e+02 Score=26.46 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=34.4
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
++..|++.-.++.|-..-+..|+..|.++|+.|.++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 44567777778889999999999999999999999887643
No 315
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=40.24 E-value=40 Score=34.81 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=34.9
Q ss_pred CCCcEEEEEcCCCcCcHHHH------------HHHHHHHHhCCCEEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAM------------LKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~------------l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-.++||++...|++=-+.|. .+||+++..||++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 46789999999988777774 689999999999999998654
No 316
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=40.13 E-value=2.7e+02 Score=27.79 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=27.2
Q ss_pred CCcEEEEEc-CCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 9 SKVHAVCIP-SPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 9 ~~~~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
..++|+++- .|..|. .+|+.|.++||+|+++...
T Consensus 97 ~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCCC
Confidence 347888886 677775 5789999999999999864
No 317
>PRK04328 hypothetical protein; Provisional
Probab=40.09 E-value=3.1e+02 Score=25.48 Aligned_cols=47 Identities=9% Similarity=-0.074 Sum_probs=37.3
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
++.-+++.-.|+.|-..-.+.++.+-+++|+.+.+++.+...+.+.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~ 68 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRR 68 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHH
Confidence 45667778888899988888888887788999999998776655433
No 318
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=39.67 E-value=66 Score=30.90 Aligned_cols=57 Identities=12% Similarity=0.263 Sum_probs=38.5
Q ss_pred hhccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHH
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVREL 448 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~v 448 (500)
+-..+++ +|+-||-||+.++++. ++|++.+-. -++| .. ...+.+++.+++.++
T Consensus 60 ~~~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~------------G~lG--FL-------~~~~~~~~~~~l~~~ 116 (291)
T PRK02155 60 IGARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINH------------GRLG--FI-------TDIPLDDMQETLPPM 116 (291)
T ss_pred hccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcC------------CCcc--cc-------ccCCHHHHHHHHHHH
Confidence 3345677 9999999999999774 667766431 1111 11 246678888888888
Q ss_pred hCCC
Q 010825 449 MGGE 452 (500)
Q Consensus 449 l~~~ 452 (500)
++++
T Consensus 117 ~~g~ 120 (291)
T PRK02155 117 LAGN 120 (291)
T ss_pred HcCC
Confidence 8765
No 319
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.47 E-value=57 Score=29.66 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=28.6
Q ss_pred CcCcHHHHHHHHHHHHhCCCEEEEEeCCcc-hhhhhhh
Q 010825 20 SQSHIKAMLKLAKLLHHKGFHITFVNTEFN-HRRFLKS 56 (500)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~-~~~v~~~ 56 (500)
+.|----..+++.-+...||.|++++++.. ++.+.++
T Consensus 38 ~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm 75 (235)
T COG2874 38 GTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQM 75 (235)
T ss_pred CccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHH
Confidence 567777788899999999999999999764 3344443
No 320
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=39.36 E-value=1.8e+02 Score=30.01 Aligned_cols=35 Identities=14% Similarity=0.251 Sum_probs=27.7
Q ss_pred EEEEEcC-CCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 12 HAVCIPS-PSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 12 ~il~~~~-~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
+|++... .+.|-..-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 4555533 3457899999999999999999998866
No 321
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=38.89 E-value=1e+02 Score=31.78 Aligned_cols=27 Identities=7% Similarity=0.097 Sum_probs=24.0
Q ss_pred CcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 20 SQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
..|-..-...|++.|+++|++|..+-+
T Consensus 10 ~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 10 GVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred CCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 457889999999999999999999865
No 322
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.85 E-value=41 Score=29.53 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=26.1
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-h-HHHHHHHhCCCeEEEe
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-F-TVTAAQQLGLPIVLLF 151 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~-~-~~~~A~~lgiP~v~~~ 151 (500)
..++.+++. +||+||...... . ....-+..|||++.+.
T Consensus 60 ~n~E~ll~l----------~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 60 LNVELIVAL----------KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred CCHHHHhcc----------CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 455666654 999999865433 2 4445578999998874
No 323
>PRK10490 sensor protein KdpD; Provisional
Probab=38.78 E-value=55 Score=37.05 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-|+||.+=..|+.|-.+-|+.-|.+|.++|++|.+..-+.
T Consensus 23 g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~~e~ 62 (895)
T PRK10490 23 GKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGVVET 62 (895)
T ss_pred CcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEEeeC
Confidence 4589999999999999999999999999999998876543
No 324
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=38.78 E-value=40 Score=32.72 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+.+|||+++-.|+.| ..+|..|++.||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 345799999888877 456788999999999998755
No 325
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.67 E-value=37 Score=30.74 Aligned_cols=39 Identities=21% Similarity=0.119 Sum_probs=23.5
Q ss_pred CccccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEe
Q 010825 1 MESKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVN 45 (500)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (500)
||++.+ +++.=|.=+..++.|| +||+++++.|+.|.-..
T Consensus 1 ~e~~~~-~k~VlItgcs~GGIG~-----ala~ef~~~G~~V~Ata 39 (289)
T KOG1209|consen 1 SELQSQ-PKKVLITGCSSGGIGY-----ALAKEFARNGYLVYATA 39 (289)
T ss_pred CCcccC-CCeEEEeecCCcchhH-----HHHHHHHhCCeEEEEEc
Confidence 566664 2222222233344455 78999999999986543
No 326
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.41 E-value=3.4e+02 Score=26.11 Aligned_cols=99 Identities=19% Similarity=0.248 Sum_probs=56.9
Q ss_pred CCcEEEEEcCCCcC--cH--HHHHHHHHHHHhCCCEEEEE-eCCcchhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCC
Q 010825 9 SKVHAVCIPSPSQS--HI--KAMLKLAKLLHHKGFHITFV-NTEFNHRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDE 83 (500)
Q Consensus 9 ~~~~il~~~~~~~G--H~--~p~l~La~~L~~rGH~Vt~~-~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 83 (500)
++..|++.|..+.. .| .-+.+|++.|.++|.++.++ +++...+...+... ..++.. +
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~-----~~~~~~-------l------ 239 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAE-----ALPGAV-------V------ 239 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHh-----hCCCCe-------e------
Confidence 34567888765442 33 24779999999889998876 44333333322200 000000 0
Q ss_pred CCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEec
Q 010825 84 SSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFT 152 (500)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~ 152 (500)
. . ...+.++++-+. +-|++|+.- ...+-+|.-+|+|++.++.
T Consensus 240 --------------~--g-~~sL~el~ali~--------~a~l~I~~D--Sgp~HlAaa~g~P~i~lfg 281 (319)
T TIGR02193 240 --------------L--P-KMSLAEVAALLA--------GADAVVGVD--TGLTHLAAALDKPTVTLYG 281 (319)
T ss_pred --------------c--C-CCCHHHHHHHHH--------cCCEEEeCC--ChHHHHHHHcCCCEEEEEC
Confidence 0 0 112334444443 449999763 5577889999999999863
No 327
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.40 E-value=64 Score=30.91 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=38.6
Q ss_pred HhhccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 372 ~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
.+...+++ +|+-||-||+..+++. ++|++.+-. -++|. . ..++.+++.+++.+
T Consensus 60 ~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~------------G~lGF--L-------t~~~~~~~~~~l~~ 116 (287)
T PRK14077 60 ELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA------------GHLGF--L-------TDITVDEAEKFFQA 116 (287)
T ss_pred hcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC------------CCccc--C-------CcCCHHHHHHHHHH
Confidence 34445677 9999999999988663 677766331 01111 0 24667888888888
Q ss_pred HhCCC
Q 010825 448 LMGGE 452 (500)
Q Consensus 448 vl~~~ 452 (500)
+++++
T Consensus 117 i~~g~ 121 (287)
T PRK14077 117 FFQGE 121 (287)
T ss_pred HHcCC
Confidence 88754
No 328
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=38.37 E-value=1.9e+02 Score=28.18 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=58.8
Q ss_pred CCceEEEeeccc--c--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCce-eeec--cch-hH
Q 010825 301 PNSVIYVNFGSI--I--IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGF-IASW--CPQ-EE 372 (500)
Q Consensus 301 ~~~vV~vs~Gs~--~--~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~-~~~~--~pq-~~ 372 (500)
.++.|.+.-|+. . ..+.+.+.++++.+...+.++|..-+.++. . ..+.+.+..+.++. +.+- +.+ .+
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~-~----~~~~i~~~~~~~~~~l~g~~sL~el~a 247 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDH-P----AGNEIEALLPGELRNLAGETSLDEAVD 247 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhH-H----HHHHHHHhCCcccccCCCCCCHHHHHH
Confidence 356888888774 2 567788889888887666666554332211 0 01112122222322 2332 344 46
Q ss_pred hhccCCcceeEeecCchhHHHHHhcCCceeeC
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCAGVPMICW 404 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 404 (500)
+++++++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 248 li~~a~l--~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 248 LIALAKA--VVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred HHHhCCE--EEee-CCHHHHHHHHcCCCEEEE
Confidence 9999998 8864 457788999999999874
No 329
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=38.00 E-value=99 Score=31.58 Aligned_cols=35 Identities=17% Similarity=0.089 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
.||||++-.+++-| +|++.|.+-++-..+++.+.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 48999999998888 689999988865444444333
No 330
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=37.51 E-value=3.9e+02 Score=27.96 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
++.-+++.-.++.|-..-...++.+.+.+|..|.+++.+...+.+.+
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~ 318 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIR 318 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHH
Confidence 34567777778889999999999999999999999998876665443
No 331
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=37.38 E-value=3.4e+02 Score=25.73 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=27.5
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|+++-.|+.|-......|.+.|.+.|.+|.++..+.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~ 39 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDS 39 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 677888999999999999999999999999998544
No 332
>PLN02929 NADH kinase
Probab=37.18 E-value=54 Score=31.56 Aligned_cols=67 Identities=7% Similarity=0.093 Sum_probs=42.5
Q ss_pred ccCCcceeEeecCchhHHHHHh---cCCceeeCCcccc------hhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHH
Q 010825 375 NHPAIGGFFTHSGWNSTIESLC---AGVPMICWPFLGD------QPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQV 445 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~---~GvP~v~~P~~~D------Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i 445 (500)
..+++ +|+-||-||+..+++ .++|++.+=.... +..+.... ..-+|..- ..+.+++.+++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~--~r~lGfL~-------~~~~~~~~~~L 131 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDA--RRSTGHLC-------AATAEDFEQVL 131 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccccc--ccCccccc-------cCCHHHHHHHH
Confidence 34466 999999999999865 4688887654321 12222111 11122222 46689999999
Q ss_pred HHHhCCC
Q 010825 446 RELMGGE 452 (500)
Q Consensus 446 ~~vl~~~ 452 (500)
.+++++.
T Consensus 132 ~~il~g~ 138 (301)
T PLN02929 132 DDVLFGR 138 (301)
T ss_pred HHHHcCC
Confidence 9999865
No 333
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=37.03 E-value=3.2e+02 Score=27.62 Aligned_cols=139 Identities=12% Similarity=0.116 Sum_probs=80.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCC-CchHHHHHhhcC-ceeeec-------cchhH
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETAD-LPAEFEVKAKEK-GFIASW-------CPQEE 372 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~~n-v~~~~~-------~pq~~ 372 (500)
+.+++.-.||.... ....+++.|.+.+..+-.+++.... .+ -|+.+ +.+.++ |+..-| +.|.+
T Consensus 7 k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A~----~fi~~~~l-~~l~~~~V~~~~~~~~~~~~~~hi~ 78 (399)
T PRK05579 7 KRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAAK----KFVTPLTF-QALSGNPVSTDLWDPAAEAAMGHIE 78 (399)
T ss_pred CeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhHH----HHHhHHHH-HHhhCCceEccccccccCCCcchhh
Confidence 34666667776422 3344566667777776555543210 00 12222 222333 332212 34556
Q ss_pred hhccCCcceeEeecCchhHHH-------------HHhcCCceeeCCcccc-------hhhhHHHhhhhhcceeEee----
Q 010825 373 VLNHPAIGGFFTHSGWNSTIE-------------SLCAGVPMICWPFLGD-------QPTNCRYTCNEWGVGLEII---- 428 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~e-------------al~~GvP~v~~P~~~D-------Q~~na~~~~~~~G~g~~~~---- 428 (500)
+.+.+|+ .+|-=|=+||+.- ++.+++|++++|-... ...|..++ .+.|+-+.-|
T Consensus 79 l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~ii~P~~g~ 156 (399)
T PRK05579 79 LAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATL-RSRGVEIIGPASGR 156 (399)
T ss_pred cccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHH-HHCCCEEECCCCcc
Confidence 6666675 5666666666544 3667999999995432 24567777 5678777665
Q ss_pred --eCCCC--CCcCHHHHHHHHHHHhC
Q 010825 429 --NGGDD--NRVSRNEVEKQVRELMG 450 (500)
Q Consensus 429 --~~~~~--~~~~~~~l~~~i~~vl~ 450 (500)
+++.. +-.+.++|...+.+.+.
T Consensus 157 la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 157 LACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 44333 46788999999988774
No 334
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=36.77 E-value=2.7e+02 Score=27.34 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=59.6
Q ss_pred CceEEEeecccc---ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhh-cC-ceeeec--cch-hHh
Q 010825 302 NSVIYVNFGSII---IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EK-GFIASW--CPQ-EEV 373 (500)
Q Consensus 302 ~~vV~vs~Gs~~---~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~n-v~~~~~--~pq-~~l 373 (500)
++.|.+..|+.. ..+.+.+.++++.+.+.+.++++..+.+..+.. ..+...+... .+ +-+.+- +.+ .++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~---~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLA---CVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHH---HHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 467888888863 567888889999887777777665443211000 0011111101 11 223333 344 469
Q ss_pred hccCCcceeEeecCchhHHHHHhcCCceeeC
Q 010825 374 LNHPAIGGFFTHSGWNSTIESLCAGVPMICW 404 (500)
Q Consensus 374 L~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 404 (500)
++++++ ||+. -.|-++=|.+.|+|+|.+
T Consensus 260 i~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 260 IDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred HHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 999998 8865 457788899999999874
No 335
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=36.76 E-value=4.5e+02 Score=27.26 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=24.1
Q ss_pred CcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 20 SQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 20 ~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
..|-..-...|++.|+++|.+|..+-+-
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3577888999999999999999988764
No 336
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=36.64 E-value=43 Score=35.38 Aligned_cols=36 Identities=11% Similarity=-0.038 Sum_probs=26.8
Q ss_pred eEEEEcCCcc---hHHHHHHHhCCCeEEEeccchhHHHH
Q 010825 125 SCIISDGFLP---FTVTAAQQLGLPIVLLFTISACSFMG 160 (500)
Q Consensus 125 DlvI~D~~~~---~~~~~A~~lgiP~v~~~~~~~~~~~~ 160 (500)
.-||+....| .++...++..+++..++++.+....-
T Consensus 143 ~~ViaHfHEWmaG~gll~lr~~~~~VaTvFTTHAT~lGR 181 (633)
T PF05693_consen 143 PKVIAHFHEWMAGVGLLYLRKRKPDVATVFTTHATLLGR 181 (633)
T ss_dssp EEEEEEEESGGGTTHHHHHHHTT-SCEEEEEESS-HHHH
T ss_pred CcEEEEechHhHhHHHHHHhccCCCeeEEEEecccchhh
Confidence 6677766555 47888999999999999998887654
No 337
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=36.28 E-value=42 Score=34.22 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=31.5
Q ss_pred CccccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 1 MESKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 1 ~~~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
|.|.+.-.++.||+++= ++++++ ..|+.|...+++||++.+...
T Consensus 1 ~~~~~~~~~~~~vVIvG-gG~aGl----~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 1 MRSRTARLKKPNVVVLG-TGWAGA----YFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCcccCCCCCeEEEEC-CCHHHH----HHHHHhCcCCCeEEEEcCCCC
Confidence 56666667778988886 455554 357788767899999987654
No 338
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=36.14 E-value=3.4e+02 Score=24.78 Aligned_cols=33 Identities=12% Similarity=0.048 Sum_probs=29.0
Q ss_pred cCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 17 PSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 17 ~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+-|+.|-..-...||..|+++|++|.++-.+..
T Consensus 9 ~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 9 VKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 367889999999999999999999999987653
No 339
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=35.95 E-value=59 Score=31.79 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=20.8
Q ss_pred CeeEEEEcCCcc-------hH---HHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLP-------FT---VTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~-------~~---~~~A~~lgiP~v~~ 150 (500)
+||++|+-+.+. |+ ..+.+++|||.+.-
T Consensus 80 ~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 80 KPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred CCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 999999998554 21 23457899999973
No 340
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=35.65 E-value=46 Score=30.57 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=20.2
Q ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 23 HIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 23 H~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|+..|...|++|.++||+|+++....
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 67889999999999999999998764
No 341
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=35.49 E-value=87 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=33.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
||++..-++.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888999999999999999999999999988765
No 342
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=35.32 E-value=56 Score=33.75 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
++||++...++.+ .+=...|.+.|.++||+|.++.++...+.+..
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~sA~~fv~p 114 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKAAQQFVTP 114 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcCHHHHhhH
Confidence 5788888777555 44788999999999999999999877666544
No 343
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=35.07 E-value=74 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=24.3
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCC
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNSNH 332 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~~~ 332 (500)
.+|+++||-.......++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 59999999988777778888888887765
No 344
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=34.85 E-value=86 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.114 Sum_probs=32.8
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
++..+.++..|-.....++..|.+.|++|.++......+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 567777888999999999999999999999997654433
No 345
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=34.49 E-value=1.9e+02 Score=32.90 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.7
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||++|.... ...+|+++|||++...
T Consensus 389 ~pDLlig~~~---~~~~a~k~giP~~~~~ 414 (917)
T PRK14477 389 MPDLIVAGGK---TKFLALKTRTPFLDIN 414 (917)
T ss_pred CCCEEEecCc---hhhHHHHcCCCeEEcc
Confidence 9999998653 5678999999999754
No 346
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.32 E-value=2.2e+02 Score=27.41 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=47.0
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeE
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFF 383 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I 383 (500)
+++++--|-.....+....+...++..+..+........ .+..+ .. ........++ +|
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~---------~~~~~-~a----------~~~~~~~~d~--vv 69 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDA---------HDARH-LV----------AAALAKGTDA--LV 69 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCH---------HHHHH-HH----------HHHHhcCCCE--EE
Confidence 344544443333345566777888888777654433211 11100 00 0112233455 99
Q ss_pred eecCchhHHHHH----hcCCceeeCCc
Q 010825 384 THSGWNSTIESL----CAGVPMICWPF 406 (500)
Q Consensus 384 ~HgG~~s~~eal----~~GvP~v~~P~ 406 (500)
--||-||+.|++ ..++|+-++|.
T Consensus 70 v~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 70 VVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999999997 45789999996
No 347
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=34.30 E-value=2e+02 Score=28.19 Aligned_cols=96 Identities=10% Similarity=-0.019 Sum_probs=58.6
Q ss_pred CCceEEEeeccc----cccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhc----C-ceeeec--cc
Q 010825 301 PNSVIYVNFGSI----IIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKE----K-GFIASW--CP 369 (500)
Q Consensus 301 ~~~vV~vs~Gs~----~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----n-v~~~~~--~p 369 (500)
+++.|.+..|+. -..+.+.+.++++.+...+.++|+.-+.++.+ ..+......+. + +-+.+- +.
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~-----~~~~i~~~~~~~~~~~~~~l~g~~sL~ 253 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHE-----AGNEILAALNTEQQAWCRNLAGETQLE 253 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHH-----HHHHHHHhcccccccceeeccCCCCHH
Confidence 456888888874 25678888999988876666766543222110 01111111111 1 123333 34
Q ss_pred h-hHhhccCCcceeEeecCchhHHHHHhcCCceeeC
Q 010825 370 Q-EEVLNHPAIGGFFTHSGWNSTIESLCAGVPMICW 404 (500)
Q Consensus 370 q-~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~v~~ 404 (500)
+ .+++.++++ ||+ .-.|-++=|.+.|+|+|.+
T Consensus 254 el~ali~~a~l--~I~-nDTGp~HlAaA~g~P~val 286 (348)
T PRK10916 254 QAVILIAACKA--IVT-NDSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHhCCE--EEe-cCChHHHHHHHhCCCEEEE
Confidence 4 469999998 885 4567889999999999874
No 348
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.26 E-value=70 Score=28.12 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFL 54 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~ 54 (500)
.+..++++-.++.|-..-..++++++.++|+.|.|+......+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 4568999999999988889999999999999999998776555543
No 349
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=33.80 E-value=59 Score=28.47 Aligned_cols=113 Identities=17% Similarity=0.186 Sum_probs=58.5
Q ss_pred CcHHHHHHHHHHH-HhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC----------CCCCCCCC------C
Q 010825 22 SHIKAMLKLAKLL-HHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD----------GLPASSDE------S 84 (500)
Q Consensus 22 GH~~p~l~La~~L-~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~----------~~~~~~~~------~ 84 (500)
+.+.=.+..|+.| .+.|.+|.+... ...+.+.+.. .+.+..++- .....+.. .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG-~ta~~lr~~~---------~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRG-GTAELLRKHV---------SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEH-HHHHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECC-HHHHHHHHhC---------CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 5677788899999 788999977655 4455555531 233444331 00000000 0
Q ss_pred CccccHHHHHHHH---HHhc---cchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcchHHHHHHHhCCCeEEEecc
Q 010825 85 STTQDMYSLCESI---MNNV---MLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLPFTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 85 ~~~~~~~~~~~~~---~~~~---~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~~~~~A~~lgiP~v~~~~~ 153 (500)
....++..+-..+ .... ....++..+.++... ++|+||.+.. +..+|+++|+|++.+.++
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~------G~~viVGg~~---~~~~A~~~gl~~v~i~sg 152 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKAE------GVDVIVGGGV---VCRLARKLGLPGVLIESG 152 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHHT------T--EEEESHH---HHHHHHHTTSEEEESS--
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHHc------CCcEEECCHH---HHHHHHHcCCcEEEEEec
Confidence 0111222222222 1111 134567777777766 8999999963 578899999999987654
No 350
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=33.79 E-value=2.1e+02 Score=25.04 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=46.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc----c-hhhhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCCCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF----N-HRRFLKSRGEHSLGGLPSFRFEAIPDGLPASSDESS 85 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~----~-~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 85 (500)
-.|-+++..+.|-....+-+|-+-+-+|.+|.++--=. . ...+.+. .+++.+.....++...
T Consensus 4 G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~--------l~~~~~~~~g~~f~~~----- 70 (172)
T PF02572_consen 4 GLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKK--------LPNVEIERFGKGFVWR----- 70 (172)
T ss_dssp --EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGG--------GT--EEEE--TT---------
T ss_pred cEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHh--------CCeEEEEEcCCccccc-----
Confidence 35788888999988877777666666777888875211 1 1112121 2357777776544333
Q ss_pred ccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc
Q 010825 86 TTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP 134 (500)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~ 134 (500)
..+...- ...+ ...++...+.+.. .++|+||.|-...
T Consensus 71 -~~~~~~~----~~~~-~~~~~~a~~~i~~------~~~dlvILDEi~~ 107 (172)
T PF02572_consen 71 -MNEEEED----RAAA-REGLEEAKEAISS------GEYDLVILDEINY 107 (172)
T ss_dssp -GGGHHHH----HHHH-HHHHHHHHHHTT-------TT-SEEEEETHHH
T ss_pred -CCCcHHH----HHHH-HHHHHHHHHHHhC------CCCCEEEEcchHH
Confidence 1111111 2222 3334444444433 3899999998655
No 351
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=33.65 E-value=2.3e+02 Score=27.37 Aligned_cols=136 Identities=10% Similarity=-0.071 Sum_probs=73.3
Q ss_pred ceEEEeec-ccc--ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeee--ccch-hHhhcc
Q 010825 303 SVIYVNFG-SII--IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIAS--WCPQ-EEVLNH 376 (500)
Q Consensus 303 ~vV~vs~G-s~~--~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~--~~pq-~~lL~~ 376 (500)
+.|.+..| |.. ..+.+.+.++++.+...+.++++..+++.... .-+...+. ..++.+.+ .+.+ .+++.+
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~----~~~~i~~~-~~~~~l~g~~sL~elaali~~ 253 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQ----RAKRLAEG-FPYVEVLPKLSLEQVARVLAG 253 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHH----HHHHHHcc-CCcceecCCCCHHHHHHHHHh
Confidence 44544444 432 47788889999988766777665444321000 00111111 11233333 2444 469999
Q ss_pred CCcceeEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHHHHHHHHHHhC
Q 010825 377 PAIGGFFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNEVEKQVRELMG 450 (500)
Q Consensus 377 ~~~~~~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~l~~~i~~vl~ 450 (500)
+++ ||+. --|.++=|.+.|+|+|++=--.|...++-.- + ...-.+. + ... ..+++|++.+++.++|.
T Consensus 254 a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~-~-~~~~~~~-~-~~cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 254 AKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYG-K-NQHACRS-P-GKSMADLSAETVFQKLETLIS 321 (322)
T ss_pred CCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCC-C-CceeecC-C-CcccccCCHHHHHHHHHHHhh
Confidence 998 8865 4578899999999999841111211111000 0 0000110 1 112 58999999999988764
No 352
>PRK13768 GTPase; Provisional
Probab=33.33 E-value=1.3e+02 Score=28.13 Aligned_cols=37 Identities=14% Similarity=0.270 Sum_probs=31.6
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-+++.-.++.|-..-...++..|..+|++|.++..+.
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 5667777788999999999999999999999997654
No 353
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=33.25 E-value=3.9e+02 Score=26.24 Aligned_cols=105 Identities=17% Similarity=0.237 Sum_probs=69.0
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIG 380 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 380 (500)
.+.|..+.+|++. ..++.-+...+..+....+... .++...+.. ..++...++++.+|+
T Consensus 162 gK~vgilG~G~IG-------~~ia~rL~~Fg~~i~y~~r~~~-------~~~~~~~~~------~~~~d~~~~~~~sD~- 220 (336)
T KOG0069|consen 162 GKTVGILGLGRIG-------KAIAKRLKPFGCVILYHSRTQL-------PPEEAYEYY------AEFVDIEELLANSDV- 220 (336)
T ss_pred CCEEEEecCcHHH-------HHHHHhhhhccceeeeecccCC-------chhhHHHhc------ccccCHHHHHhhCCE-
Confidence 3569999999997 4555556556633333333222 122221111 226677889999996
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCcccc--hhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHH
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFLGD--QPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVR 446 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~~D--Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~ 446 (500)
+| |.+|+..+ ...|...+ +..+-|..+.|..+...++++++.+++.
T Consensus 221 -iv------------------v~~pLt~~T~~liNk~~~-~~mk~g~vlVN~aRG~iide~~l~eaL~ 268 (336)
T KOG0069|consen 221 -IV------------------VNCPLTKETRHLINKKFI-EKMKDGAVLVNTARGAIIDEEALVEALK 268 (336)
T ss_pred -EE------------------EecCCCHHHHHHhhHHHH-HhcCCCeEEEeccccccccHHHHHHHHh
Confidence 54 45577543 56788888 6899999997777777899999988875
No 354
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=33.23 E-value=3.2e+02 Score=27.28 Aligned_cols=36 Identities=14% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCC-------CEEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKG-------FHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG-------H~Vt~~~~~~ 48 (500)
+.++||.++-.+++| .+||..|++.| |+|++...+.
T Consensus 9 ~~~~ki~ViGaG~wG-----tAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 9 CGPLKVSVIGSGNWG-----SAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred cCCCeEEEECCCHHH-----HHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 677899999998887 57899999987 8999987654
No 355
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=32.78 E-value=3.3e+02 Score=25.95 Aligned_cols=41 Identities=10% Similarity=0.120 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.++|+++-.|..|.+ +|+.|.++||.|.++..+........
T Consensus 3 ~~~v~IvG~GliG~s-----~a~~l~~~g~~v~i~g~d~~~~~~~~ 43 (279)
T COG0287 3 SMKVGIVGLGLMGGS-----LARALKEAGLVVRIIGRDRSAATLKA 43 (279)
T ss_pred CcEEEEECCchHHHH-----HHHHHHHcCCeEEEEeecCcHHHHHH
Confidence 457888888888764 79999999999999998877665444
No 356
>PRK06932 glycerate dehydrogenase; Provisional
Probab=32.66 E-value=2.3e+02 Score=27.51 Aligned_cols=99 Identities=17% Similarity=0.138 Sum_probs=65.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.+-.+.+|.+. +.++..++..+-+++.. .... .. . ....+.+..++|+.+|+
T Consensus 148 ktvgIiG~G~IG-------~~va~~l~~fg~~V~~~-~~~~--------~~--------~-~~~~~~~l~ell~~sDi-- 200 (314)
T PRK06932 148 STLGVFGKGCLG-------TEVGRLAQALGMKVLYA-EHKG--------AS--------V-CREGYTPFEEVLKQADI-- 200 (314)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEE-CCCc--------cc--------c-cccccCCHHHHHHhCCE--
Confidence 468899999987 55666666777776543 2110 00 0 11235677899999997
Q ss_pred eEeecCchhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVR 446 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~ 446 (500)
++-|+ |+.. ....|+..+ +...=|..++|-.+..-++++.|.+++.
T Consensus 201 v~l~~------------------Plt~~T~~li~~~~l-~~mk~ga~lIN~aRG~~Vde~AL~~aL~ 248 (314)
T PRK06932 201 VTLHC------------------PLTETTQNLINAETL-ALMKPTAFLINTGRGPLVDEQALLDALE 248 (314)
T ss_pred EEEcC------------------CCChHHhcccCHHHH-HhCCCCeEEEECCCccccCHHHHHHHHH
Confidence 76555 4433 356778888 5777777776766666788888888776
No 357
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.48 E-value=91 Score=30.20 Aligned_cols=56 Identities=11% Similarity=0.262 Sum_probs=38.8
Q ss_pred hccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHh
Q 010825 374 LNHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELM 449 (500)
Q Consensus 374 L~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl 449 (500)
...+++ +|+=||-||+..+++. ++|++.+-. - ++| -. ..++.+++.+++.+++
T Consensus 66 ~~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~--------G----~lG--FL-------t~~~~~~~~~~l~~l~ 122 (305)
T PRK02649 66 DSSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINT--------G----HLG--FL-------TEAYLNQLDEAIDQVL 122 (305)
T ss_pred ccCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeC--------C----CCc--cc-------ccCCHHHHHHHHHHHH
Confidence 345666 9999999999999774 778877431 0 111 10 2456788889999888
Q ss_pred CCC
Q 010825 450 GGE 452 (500)
Q Consensus 450 ~~~ 452 (500)
+++
T Consensus 123 ~g~ 125 (305)
T PRK02649 123 AGQ 125 (305)
T ss_pred cCC
Confidence 765
No 358
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=32.47 E-value=1.2e+02 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.110 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
+.+||+++|..+.|--.-...+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 357999999998874455566666677789988776653
No 359
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=32.43 E-value=74 Score=30.52 Aligned_cols=33 Identities=12% Similarity=0.118 Sum_probs=26.1
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
|||+++-.|+.| ..+|..|++.||+|+++..+.
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~~ 33 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRPK 33 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecHH
Confidence 578888777766 457888999999999998733
No 360
>PRK06487 glycerate dehydrogenase; Provisional
Probab=32.37 E-value=2e+02 Score=27.92 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=66.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.+-.+.+|.+. +.++..++..+-+++..-... .+. ...+++..++|+.+|+
T Consensus 149 ktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~--------~~~-----------~~~~~~l~ell~~sDi-- 200 (317)
T PRK06487 149 KTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG--------RPA-----------RPDRLPLDELLPQVDA-- 200 (317)
T ss_pred CEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC--------Ccc-----------cccccCHHHHHHhCCE--
Confidence 568999999987 556666666777765432110 000 1234577889999997
Q ss_pred eEeecCchhHHHHHhcCCceeeCCcc--cchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFL--GDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~--~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
++-|+ |+. .....|+..+ +.+.=|-.++|-.+...+++++|.++++.
T Consensus 201 v~l~l------------------Plt~~T~~li~~~~~-~~mk~ga~lIN~aRG~vVde~AL~~AL~~ 249 (317)
T PRK06487 201 LTLHC------------------PLTEHTRHLIGAREL-ALMKPGALLINTARGGLVDEQALADALRS 249 (317)
T ss_pred EEECC------------------CCChHHhcCcCHHHH-hcCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 66554 553 3457788888 57877777777766678888888887764
No 361
>PRK13057 putative lipid kinase; Reviewed
Probab=32.26 E-value=88 Score=29.85 Aligned_cols=30 Identities=13% Similarity=0.229 Sum_probs=24.4
Q ss_pred ccCCcceeEeecCchhHHHHH----hcCCceeeCCc
Q 010825 375 NHPAIGGFFTHSGWNSTIESL----CAGVPMICWPF 406 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal----~~GvP~v~~P~ 406 (500)
...++ +|--||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 44455 99999999999985 35789999996
No 362
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=32.22 E-value=44 Score=28.97 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=20.9
Q ss_pred hhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 411 PTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 411 ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
.+.+..- ++.|+|+.+ |+|+|.++|.++++..
T Consensus 102 ~d~~~Fe-~~cGVGV~V---------T~E~I~~~V~~~i~~~ 133 (164)
T PF04558_consen 102 IDVAEFE-KACGVGVVV---------TPEQIEAAVEKYIEEN 133 (164)
T ss_dssp --HHHHH-HTTTTT-------------HHHHHHHHHHHHHHT
T ss_pred CCHHHHH-HHcCCCeEE---------CHHHHHHHHHHHHHHh
Confidence 3444444 679999998 9999999999999754
No 363
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.21 E-value=95 Score=29.85 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=39.9
Q ss_pred HhhccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 372 ~lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
.+...+++ +|+=||-||+..+++. ++|++.+-.. ++|. . ..++++++.+++.+
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G------------~lGF--L-------t~~~~~~~~~~l~~ 116 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG------------RLGF--L-------ATVSKEEIEETIDE 116 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC------------CCCc--c-------cccCHHHHHHHHHH
Confidence 34445677 9999999999999873 6787764321 1111 1 24667888899998
Q ss_pred HhCCC
Q 010825 448 LMGGE 452 (500)
Q Consensus 448 vl~~~ 452 (500)
++++.
T Consensus 117 i~~g~ 121 (292)
T PRK01911 117 LLNGD 121 (292)
T ss_pred HHcCC
Confidence 88765
No 364
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=32.03 E-value=76 Score=27.24 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=28.1
Q ss_pred cCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 7 ACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 7 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
...+.+|+++-.+..| .+.++.|.+.||+|+++.++.
T Consensus 10 ~l~~~~vlVvGGG~va-----~rka~~Ll~~ga~V~VIsp~~ 46 (157)
T PRK06719 10 NLHNKVVVIIGGGKIA-----YRKASGLKDTGAFVTVVSPEI 46 (157)
T ss_pred EcCCCEEEEECCCHHH-----HHHHHHHHhCCCEEEEEcCcc
Confidence 3456788887655444 778899999999999997643
No 365
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.03 E-value=85 Score=30.19 Aligned_cols=58 Identities=10% Similarity=0.164 Sum_probs=39.3
Q ss_pred HhhccCCcceeEeecCchhHHHHHh----cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTHSGWNSTIESLC----AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 372 ~lL~~~~~~~~I~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
.+...+++ +|+=||-||+..+++ +++|++.+-. -++|.- ..++++++.+++.+
T Consensus 59 ~~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~------------G~lGFl---------~~~~~~~~~~~l~~ 115 (292)
T PRK03378 59 EIGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINR------------GNLGFL---------TDLDPDNALQQLSD 115 (292)
T ss_pred hcCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEEC------------CCCCcc---------cccCHHHHHHHHHH
Confidence 33445666 999999999999975 3667766432 112221 23557889999999
Q ss_pred HhCCC
Q 010825 448 LMGGE 452 (500)
Q Consensus 448 vl~~~ 452 (500)
++++.
T Consensus 116 i~~g~ 120 (292)
T PRK03378 116 VLEGH 120 (292)
T ss_pred HHcCC
Confidence 98765
No 366
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.00 E-value=84 Score=32.17 Aligned_cols=44 Identities=9% Similarity=0.047 Sum_probs=38.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
.++--|.|+-.-+.|--.-+..||-=|.+.+|+|.++....|+.
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRs 419 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRS 419 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhh
Confidence 34566788888899999999999999999999999999887765
No 367
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.86 E-value=2.2e+02 Score=24.64 Aligned_cols=95 Identities=17% Similarity=0.270 Sum_probs=65.0
Q ss_pred cchhHhhc-cCCcceeEeecC---chhHHHHHhcCCceeeCCcc--cchhhhHHHhhhhhcceeEeeeCCCC-CCcCHHH
Q 010825 368 CPQEEVLN-HPAIGGFFTHSG---WNSTIESLCAGVPMICWPFL--GDQPTNCRYTCNEWGVGLEIINGGDD-NRVSRNE 440 (500)
Q Consensus 368 ~pq~~lL~-~~~~~~~I~HgG---~~s~~eal~~GvP~v~~P~~--~DQ~~na~~~~~~~G~g~~~~~~~~~-~~~~~~~ 440 (500)
-+|.+|+. ||++.+-+--.| .-|+.|...+|.=.+. |.- -=+..|+.+. ++.|.-..+ - +..+.++
T Consensus 63 ~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls-~~E~a~f~~LN~aY~-~rFgfPfI~-----aVkg~~k~~ 135 (176)
T COG3195 63 EERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLS-PEEFARFTELNAAYV-ERFGFPFII-----AVKGNTKDT 135 (176)
T ss_pred HHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCC-HHHHHHHHHHHHHHH-HhcCCceEE-----eecCCCHHH
Confidence 34555443 777732222222 3477788888865543 211 1156799999 789998888 6 7788999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHH
Q 010825 441 VEKQVRELMGGEKGKQMRNKASKWKRFAE 469 (500)
Q Consensus 441 l~~~i~~vl~~~~~~~~~~~a~~l~~~~~ 469 (500)
|.++..+=++|....+++..+.++.+...
T Consensus 136 Il~a~~~Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 136 ILAAFERRLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 99999999988776678888888776655
No 368
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=31.79 E-value=98 Score=29.56 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=52.0
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHH
Q 010825 314 IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIE 393 (500)
Q Consensus 314 ~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~e 393 (500)
....+..+.|.+|+.....+.||...++.. -.++.++++...+-+++.+ ||-.+-..+++-
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------------a~rlL~~ld~~~~~~~pK~--~iGySDiTaL~~ 105 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGYG-----------------ANRLLPYLDYDLIRANPKI--FVGYSDITALHL 105 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------------HHHhhhhCCHHHHhhCCeE--EEEecHHHHHHH
Confidence 344556777999999999999999887542 2344555666666667666 777777777777
Q ss_pred HHhc--CCceeeCCcc
Q 010825 394 SLCA--GVPMICWPFL 407 (500)
Q Consensus 394 al~~--GvP~v~~P~~ 407 (500)
+++. |++.+-=|..
T Consensus 106 ~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 106 ALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHhcCceEEECccc
Confidence 7653 6666666653
No 369
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=31.47 E-value=61 Score=31.08 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=25.1
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
|||+++-.|+.| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 467777777666 5678889999999999987
No 370
>PRK06849 hypothetical protein; Provisional
Probab=31.40 E-value=92 Score=31.26 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.+++|++.- +.....+.+++.|.+.||+|.++....
T Consensus 3 ~~~~VLI~G----~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITG----ARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeC----CCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 357888774 223358999999999999999997764
No 371
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=31.36 E-value=2.7e+02 Score=27.22 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.+=.+.+|.+. +.++.-++..+-++++--..+. |+ . +.-.-..|++..++|+.+|+
T Consensus 147 ktvGIiG~GrIG-------~avA~r~~~Fgm~v~y~~~~~~--------~~-~-----~~~~~~~y~~l~ell~~sDi-- 203 (324)
T COG1052 147 KTLGIIGLGRIG-------QAVARRLKGFGMKVLYYDRSPN--------PE-A-----EKELGARYVDLDELLAESDI-- 203 (324)
T ss_pred CEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCCC--------hH-H-----HhhcCceeccHHHHHHhCCE--
Confidence 456777788776 4455555555556554433221 11 0 01112667788999999998
Q ss_pred eEeecCchhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
++-|| |... .+..|+..+ +..+=|..+.|-.+..-+++++|.+++.+
T Consensus 204 i~l~~------------------Plt~~T~hLin~~~l-~~mk~ga~lVNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 204 ISLHC------------------PLTPETRHLINAEEL-AKMKPGAILVNTARGGLVDEQALIDALKS 252 (324)
T ss_pred EEEeC------------------CCChHHhhhcCHHHH-HhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 76666 5443 457799999 68999999988877788999999999875
No 372
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.18 E-value=60 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 010825 27 MLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-+..|..|+++|++|+++=...
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHCCCcEEEEecCc
Confidence 4678899999999999986543
No 373
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=31.00 E-value=51 Score=26.63 Aligned_cols=30 Identities=10% Similarity=0.217 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 24 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+.|+..+.-.+.-|||.++++.|..+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 456777777778899999999998776543
No 374
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.86 E-value=85 Score=30.40 Aligned_cols=57 Identities=9% Similarity=0.212 Sum_probs=39.7
Q ss_pred hhccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHH
Q 010825 373 VLNHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVREL 448 (500)
Q Consensus 373 lL~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~v 448 (500)
+...+++ +|+=||-||+..+++. ++|++.+.. -++ |-. .....+++.+++.++
T Consensus 69 ~~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~------------G~l--GFL-------~~~~~~~~~~~l~~i 125 (306)
T PRK03372 69 AADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNL------------GHV--GFL-------AEAEAEDLDEAVERV 125 (306)
T ss_pred cccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEec------------CCC--cee-------ccCCHHHHHHHHHHH
Confidence 3345677 9999999999999764 788877553 111 111 235678888888888
Q ss_pred hCCC
Q 010825 449 MGGE 452 (500)
Q Consensus 449 l~~~ 452 (500)
++++
T Consensus 126 ~~g~ 129 (306)
T PRK03372 126 VDRD 129 (306)
T ss_pred HcCC
Confidence 8765
No 375
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.56 E-value=1.1e+02 Score=29.52 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=38.6
Q ss_pred ccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
..+++ +|+=||-||+.++++. ++|++.+... ++|. -...+.+++.++|.++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G------------~lGF---------l~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG------------RLGF---------LTDIRPDELEFKLAEVLD 117 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC------------cccc---------cccCCHHHHHHHHHHHHc
Confidence 34566 9999999999999753 6677765431 1111 124678999999999987
Q ss_pred CC
Q 010825 451 GE 452 (500)
Q Consensus 451 ~~ 452 (500)
++
T Consensus 118 g~ 119 (295)
T PRK01231 118 GH 119 (295)
T ss_pred CC
Confidence 64
No 376
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=30.55 E-value=3e+02 Score=23.00 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=21.3
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+-+++++|... .-...|+..|+++|.+
T Consensus 150 p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 150 PEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp GGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred cceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 44777777655 7899999999999864
No 377
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.30 E-value=3e+02 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=20.7
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|.... ...+|+++|+|++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 8999999843 467899999999854
No 378
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=30.21 E-value=87 Score=32.45 Aligned_cols=55 Identities=9% Similarity=0.202 Sum_probs=38.4
Q ss_pred ccCCcceeEeecCchhHHHHHhc----CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 375 NHPAIGGFFTHSGWNSTIESLCA----GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 375 ~~~~~~~~I~HgG~~s~~eal~~----GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
..+++ +|+=||-||++.|++. ++|++.+- + -++|. + ..++.+++.+++.++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN-----------~-G~LGF---L------t~i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFS-----------M-GSLGF---M------TPFHSEQYRDCLDAILK 317 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe-----------C-CCcce---e------cccCHHHHHHHHHHHHc
Confidence 45676 9999999999999774 45666532 1 11222 1 24678899999999988
Q ss_pred CC
Q 010825 451 GE 452 (500)
Q Consensus 451 ~~ 452 (500)
++
T Consensus 318 G~ 319 (508)
T PLN02935 318 GP 319 (508)
T ss_pred CC
Confidence 65
No 379
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=30.15 E-value=3e+02 Score=22.32 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=30.8
Q ss_pred hhhhhhcCCCCCceEEEeecccccc-CHHHHHHHHHHHHhCCCCEEEE
Q 010825 291 ECLQWLDSKEPNSVIYVNFGSIIIM-NKQQLIEVAMGLVNSNHPFLWI 337 (500)
Q Consensus 291 ~l~~~l~~~~~~~vV~vs~Gs~~~~-~~~~~~~l~~al~~~~~~~v~~ 337 (500)
+..+|+..+ -+++|-|-.... +++.+..++..+.+.+.--+.+
T Consensus 35 d~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i 78 (123)
T PF07905_consen 35 DPSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGI 78 (123)
T ss_pred CHHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 356788554 388888887665 6677888899998887755444
No 380
>PF01024 Colicin: Colicin pore forming domain; InterPro: IPR000293 Colicins are plasmid-encoded polypeptide toxins produced by and active against Escherichia coli and closely related bacteria. Colicins are released into the environment to reduce competition from other bacterial strains. Colicins bind to outer membrane receptors, using them to translocate to the cytoplasm or cytoplasmic membrane, where they exert their cytotoxic effect, including depolarisation of the cytoplasmic membrane, DNase activity, RNase activity, or inhibition of murein synthesis. Channel-forming colicins (colicins A, B, E1, Ia, Ib, and N) are transmembrane proteins that depolarize the cytoplasmic membrane, leading to dissipation of cellular energy []. These colicins contain at least three domains: an N-terminal translocation domain responsible for movement across the outer membrane and periplasmic space; a central domain responsible for receptor recognition; and a C-terminal cytotoxic domain responsible for channel formation in the cytoplasmic membrane []. This entry represents the C-terminal cytotoxic domain, which has a globin-like fold with additional helices at either end.; GO: 0019835 cytolysis, 0050829 defense response to Gram-negative bacterium, 0016021 integral to membrane; PDB: 2I88_A 1CII_A 1RH1_A 1COL_B 1A87_A 3FEW_X.
Probab=30.11 E-value=82 Score=27.84 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=29.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcCCCCCCC
Q 010825 451 GEKGKQMRNKASKWKRFAEEATAPDGSSATNLEKLVNQVLLSEGLIPSK 499 (500)
Q Consensus 451 ~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~ 499 (500)
+..|++|++-++++++.++ |...+.+++-++.+.++.+...+|
T Consensus 28 e~~G~Ky~~~A~elA~~~k------GKkIRs~~dAl~s~eK~~~n~~kK 70 (187)
T PF01024_consen 28 EKYGEKYKKLAKELAEDAK------GKKIRSVDDALKSFEKYKSNLNKK 70 (187)
T ss_dssp HHH-HHHHHHHHHHHHHHH------TGC---HHHHHHHHHHHHTHTTCS
T ss_pred HHHHHHHHHHHHHHHHHhc------ccccCCHHHHHHHHHHHHhchhhh
Confidence 3346778888888888888 777888999999888876655443
No 381
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.10 E-value=95 Score=29.91 Aligned_cols=58 Identities=14% Similarity=0.209 Sum_probs=40.1
Q ss_pred HhhccCCcceeEeecCchhHHHHHh----cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 372 EVLNHPAIGGFFTHSGWNSTIESLC----AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 372 ~lL~~~~~~~~I~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
++...+++ +|+=||-||+..+++ .++|++.+-. -+ +|-. ..++.+++.+++.+
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~------------G~--lGFL-------~~~~~~~~~~~l~~ 120 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQ------------GH--LGFL-------TQIPREYMTDKLLP 120 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEec------------CC--CeEe-------eccCHHHHHHHHHH
Confidence 33345677 999999999999975 3778877431 11 1221 24677889999999
Q ss_pred HhCCC
Q 010825 448 LMGGE 452 (500)
Q Consensus 448 vl~~~ 452 (500)
+++++
T Consensus 121 i~~g~ 125 (296)
T PRK04539 121 VLEGK 125 (296)
T ss_pred HHcCC
Confidence 88765
No 382
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=30.03 E-value=4.9e+02 Score=24.92 Aligned_cols=103 Identities=9% Similarity=0.067 Sum_probs=54.2
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHh--CCCEEEEEeC-Ccchh-hhhhhcCCCCCCCCCCeeEEeCCCCCCCCCCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHH--KGFHITFVNT-EFNHR-RFLKSRGEHSLGGLPSFRFEAIPDGLPASSDE 83 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~--rGH~Vt~~~~-~~~~~-~v~~~~~~~~~~~~~~~~f~~l~~~~~~~~~~ 83 (500)
.+++||+++.++..+.+. +|.+.... .+++|.++.+ ..... ...+. ++.+..++... ..
T Consensus 87 ~~~~ri~vl~Sg~g~nl~---al~~~~~~~~~~~~i~~visn~~~~~~lA~~~----------gIp~~~~~~~~-~~--- 149 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLN---DLLYRWRIGELPMDIVGVVSNHPDLEPLAAWH----------GIPFHHFPITP-DT--- 149 (286)
T ss_pred ccCceEEEEEcCCcccHH---HHHHHHHcCCCCcEEEEEEECCccHHHHHHHh----------CCCEEEeCCCc-Cc---
Confidence 457899999999644443 33333333 3689888754 33333 32232 56665554211 10
Q ss_pred CCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHHHhCCCeEEEe
Q 010825 84 SSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~ 151 (500)
.... ...+.+.++++ ++|+||+-.+.. -...+-+.+.-.++-+.
T Consensus 150 --------------~~~~-~~~~~~~l~~~---------~~Dlivlagy~~il~~~~l~~~~~~iiNiH 194 (286)
T PRK13011 150 --------------KPQQ-EAQVLDVVEES---------GAELVVLARYMQVLSPELCRKLAGRAINIH 194 (286)
T ss_pred --------------hhhh-HHHHHHHHHHh---------CcCEEEEeChhhhCCHHHHhhccCCeEEec
Confidence 0001 22233445555 899999887543 34444455554555543
No 383
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=29.97 E-value=5e+02 Score=24.82 Aligned_cols=106 Identities=10% Similarity=0.047 Sum_probs=54.4
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.++.+.+|.+. ..++..+...+.++.+.-++. +..............+.+..++++.+|+
T Consensus 152 k~v~IiG~G~iG-------~avA~~L~~~G~~V~v~~R~~----------~~~~~~~~~g~~~~~~~~l~~~l~~aDi-- 212 (287)
T TIGR02853 152 SNVMVLGFGRTG-------MTIARTFSALGARVFVGARSS----------ADLARITEMGLIPFPLNKLEEKVAEIDI-- 212 (287)
T ss_pred CEEEEEcChHHH-------HHHHHHHHHCCCEEEEEeCCH----------HHHHHHHHCCCeeecHHHHHHHhccCCE--
Confidence 357888888876 566777777777654433211 1111000111222333344668889998
Q ss_pred eEeecCchhHHHHHhc--CCceeeCCcccchhhhH-HHhhhhhcceeEe
Q 010825 382 FFTHSGWNSTIESLCA--GVPMICWPFLGDQPTNC-RYTCNEWGVGLEI 427 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~--GvP~v~~P~~~DQ~~na-~~~~~~~G~g~~~ 427 (500)
+|+|...+-+.+.... ..-.+++=+..+..... ..+ ++.|+-..+
T Consensus 213 Vint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf~~A-k~~G~~a~~ 260 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDFEYA-KKRGIKALL 260 (287)
T ss_pred EEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCHHHH-HHCCCEEEE
Confidence 9999887644333211 11234443333322211 333 667877774
No 384
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=29.95 E-value=82 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
.++.+|+++++++. +...+..++.|.+.|.+++++..
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 45678999998887 46679999999999999998865
No 385
>PLN02470 acetolactate synthase
Probab=29.92 E-value=83 Score=33.65 Aligned_cols=80 Identities=11% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccc-hhH-------hhccCCcceeEeecCch--
Q 010825 320 LIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCP-QEE-------VLNHPAIGGFFTHSGWN-- 389 (500)
Q Consensus 320 ~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~p-q~~-------lL~~~~~~~~I~HgG~~-- 389 (500)
...+++.|++.|.+.||.+.+..... +-+.+.+ ..++.++.--. +.+ -.....++++++|.|-|
T Consensus 16 a~~l~~~L~~~GV~~vFg~pG~~~~~----l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~ 89 (585)
T PLN02470 16 ADILVEALEREGVDTVFAYPGGASME----IHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGAT 89 (585)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccHH----HHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHH
Confidence 45677777778887777775543211 1111110 11222211111 111 11122345588998855
Q ss_pred ----hHHHHHhcCCceeeCC
Q 010825 390 ----STIESLCAGVPMICWP 405 (500)
Q Consensus 390 ----s~~eal~~GvP~v~~P 405 (500)
.+++|...++|+|++.
T Consensus 90 N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 90 NLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHhcCCcEEEEe
Confidence 7899999999999984
No 386
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=29.90 E-value=1.3e+02 Score=28.14 Aligned_cols=49 Identities=14% Similarity=0.115 Sum_probs=41.9
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
+++--+++.-.|+.|.....++.+...+++|..|.+++.+...+.+.+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~ 69 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLEN 69 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHH
Confidence 4567788888999999999999999999999999999998776655443
No 387
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=29.86 E-value=3e+02 Score=26.64 Aligned_cols=102 Identities=17% Similarity=0.097 Sum_probs=67.5
Q ss_pred CCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcc
Q 010825 301 PNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIG 380 (500)
Q Consensus 301 ~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~ 380 (500)
.+.+-.+.+|.+. +.++.-++..+-+++.. ..... .. . ....+.+..++|+.+|+
T Consensus 145 gktvGIiG~G~IG-------~~vA~~~~~fgm~V~~~-d~~~~-------~~--------~-~~~~~~~l~ell~~sDv- 199 (311)
T PRK08410 145 GKKWGIIGLGTIG-------KRVAKIAQAFGAKVVYY-STSGK-------NK--------N-EEYERVSLEELLKTSDI- 199 (311)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhcCCEEEEE-CCCcc-------cc--------c-cCceeecHHHHhhcCCE-
Confidence 3568999999986 45555555667676543 21110 00 0 11235678899999997
Q ss_pred eeEeecCchhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHH
Q 010825 381 GFFTHSGWNSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRE 447 (500)
Q Consensus 381 ~~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~ 447 (500)
++-| +|+.. ....|+..+ +.++=|..++|-.+..-+++++|.++++.
T Consensus 200 -v~lh------------------~Plt~~T~~li~~~~~-~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~ 248 (311)
T PRK08410 200 -ISIH------------------APLNEKTKNLIAYKEL-KLLKDGAILINVGRGGIVNEKDLAKALDE 248 (311)
T ss_pred -EEEe------------------CCCCchhhcccCHHHH-HhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence 6644 46653 457788888 67888888777766678888888888764
No 388
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=29.76 E-value=1.5e+02 Score=26.18 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK 37 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r 37 (500)
.+++++ .|+.||.-=|++|.+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 355555 48999999999999999776
No 389
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=29.69 E-value=69 Score=30.98 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
.+|||.|+-.|..| .++|+.|.+.||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46889999777666 57899999999999988764
No 390
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=29.56 E-value=71 Score=28.93 Aligned_cols=46 Identities=17% Similarity=0.035 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
..++||++...++.+=+. ...|.+.|. +||+|.++.++...+++..
T Consensus 17 ~~~k~IllgVtGSIAAyk-~~~lvr~L~-~g~~V~VvmT~~A~~FI~p 62 (209)
T PLN02496 17 PRKPRILLAASGSVAAIK-FGNLCHCFS-EWAEVRAVVTKASLHFIDR 62 (209)
T ss_pred CCCCEEEEEEeCHHHHHH-HHHHHHHhc-CCCeEEEEEChhHhhhcCH
Confidence 556788888877665443 466888887 5999999999887776654
No 391
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=29.23 E-value=2.3e+02 Score=29.59 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC--CCCCC
Q 010825 24 IKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD--GLPAS 80 (500)
Q Consensus 24 ~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~--~~~~~ 80 (500)
=.-+..+|+.|.+.|+++ +++....+.+.+. ++.+..+.+ ++|+.
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L~e~----------GI~v~~V~k~TgfpEi 60 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLLAEA----------GIPVTEVSDVTGFPEI 60 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHHHHC----------CCeeEEeecccCCchh
Confidence 344789999999999998 3556666667665 566655542 45544
No 392
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.12 E-value=1.7e+02 Score=26.09 Aligned_cols=81 Identities=15% Similarity=0.218 Sum_probs=50.2
Q ss_pred hHHHHHhcCCceeeCCcccchhh-hHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChh-HHHHHHHHHHHHH
Q 010825 390 STIESLCAGVPMICWPFLGDQPT-NCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKG-KQMRNKASKWKRF 467 (500)
Q Consensus 390 s~~eal~~GvP~v~~P~~~DQ~~-na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~-~~~~~~a~~l~~~ 467 (500)
|+.+++.-+.-.+..|+..=++. ..-.+ - + .--.-+..-++..+.|-+. +++++.+++++++
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV-~--a-------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e 87 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILV-A--A-------------VITGLYITILQKLLIDQEKMKELQKMMKEFQKE 87 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHH-H--H-------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 66666666666666666544433 22222 1 1 1123345566667777553 6799999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHH
Q 010825 468 AEEATAPDGSSATNLEKLVNQ 488 (500)
Q Consensus 468 ~~~~~~~~g~~~~~~~~l~~~ 488 (500)
+++|.+++. ...+++|-+.
T Consensus 88 ~~eA~~~~d--~~~lkkLq~~ 106 (201)
T COG1422 88 FREAQESGD--MKKLKKLQEK 106 (201)
T ss_pred HHHHHHhCC--HHHHHHHHHH
Confidence 999876655 5666665543
No 393
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=29.00 E-value=4.4e+02 Score=24.99 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEecc
Q 010825 105 PFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 105 ~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (500)
.+.++++.+++. +..+|+++.... .+-.+|+..|+|.+.+.+.
T Consensus 208 ~l~~l~~~ik~~------~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 208 QLAELVEFVKKS------DVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHHc------CCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 455666666665 889999998766 4667999999999876443
No 394
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=28.99 E-value=97 Score=29.04 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=32.4
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.|+|+--|+.|-..-...||..|+++|++|.++--+.
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dp 39 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCDP 39 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 5777778889999999999999999999999996543
No 395
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=28.84 E-value=1.3e+02 Score=29.53 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=34.8
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
.+...|+++.-|+.|-..-...||..|+++|++|.++..+...
T Consensus 29 ~~~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~ 71 (329)
T cd02033 29 KKTQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKS 71 (329)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecc
Confidence 3345667777788899999999999999999999999765443
No 396
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=28.84 E-value=3.4e+02 Score=27.25 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=57.3
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.+-.|.+|.+. +.++..++..|.+++.. .... .+ . . ....+.+..++|+.+|+
T Consensus 117 ktvGIIG~G~IG-------~~vA~~l~a~G~~V~~~-dp~~--------~~------~-~-~~~~~~~L~ell~~sDi-- 170 (378)
T PRK15438 117 RTVGIVGVGNVG-------RRLQARLEALGIKTLLC-DPPR--------AD------R-G-DEGDFRSLDELVQEADI-- 170 (378)
T ss_pred CEEEEECcCHHH-------HHHHHHHHHCCCEEEEE-CCcc--------cc------c-c-cccccCCHHHHHhhCCE--
Confidence 468899999987 55666677788877643 2110 00 0 0 01245678889999997
Q ss_pred eEeecCchhHHHHHhcCCceeeCCcccc------hhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLGD------QPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVR 446 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~D------Q~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~ 446 (500)
++-|. |+..+ ...++..+ +.+.=|-.++|-.+..-++.+.|.++++
T Consensus 171 I~lh~------------------PLt~~g~~~T~~li~~~~l-~~mk~gailIN~aRG~vVDe~AL~~aL~ 222 (378)
T PRK15438 171 LTFHT------------------PLFKDGPYKTLHLADEKLI-RSLKPGAILINACRGAVVDNTALLTCLN 222 (378)
T ss_pred EEEeC------------------CCCCCcccccccccCHHHH-hcCCCCcEEEECCCchhcCHHHHHHHHH
Confidence 66555 44332 34455555 4455454444544444556666655553
No 397
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=28.73 E-value=1.5e+02 Score=28.84 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=21.5
Q ss_pred CeeEEEEcCCcc------hHHHHHHHhCCCeEEEecc
Q 010825 123 AVSCIISDGFLP------FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 123 ~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (500)
..|.|..|.... ....+|+.+++|++++.++
T Consensus 195 GAd~v~~nG~v~nkiGT~~~A~~Ak~~~vPv~V~a~~ 231 (310)
T PRK08535 195 GADAITANGAVINKIGTSQIALAAHEARVPFMVAAET 231 (310)
T ss_pred CccEEecCCCEEeHHhHHHHHHHHHHhCCCEEEeccc
Confidence 446666665332 3467889999999998554
No 398
>PRK13059 putative lipid kinase; Reviewed
Probab=28.69 E-value=2.7e+02 Score=26.64 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=23.0
Q ss_pred cCCcceeEeecCchhHHHHH------hcCCceeeCCc
Q 010825 376 HPAIGGFFTHSGWNSTIESL------CAGVPMICWPF 406 (500)
Q Consensus 376 ~~~~~~~I~HgG~~s~~eal------~~GvP~v~~P~ 406 (500)
.+++ +|--||-||+.|++ ..++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3455 99999999999884 23588999996
No 399
>PRK13236 nitrogenase reductase; Reviewed
Probab=28.47 E-value=1e+02 Score=29.69 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=28.9
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
|.|.--|+.|-..-...||..|+++|++|.++--+
T Consensus 9 ~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 9 IAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred EEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 44445567789999999999999999999999543
No 400
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=28.28 E-value=1.1e+02 Score=29.30 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=31.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+|.|+.-|+.|-..-...||..|++.|++|.++-.+.
T Consensus 6 ~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~ 42 (295)
T PRK13234 6 QIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDP 42 (295)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4556677788999999999999999999999996544
No 401
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=28.28 E-value=1.5e+02 Score=28.68 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=21.4
Q ss_pred CeeEEEEcCCcc------hHHHHHHHhCCCeEEEecc
Q 010825 123 AVSCIISDGFLP------FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 123 ~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (500)
+.|.|..|.... ....+|+.+++|++++.++
T Consensus 190 Gad~v~~nG~v~nkiGT~~lA~~Ak~~~vPv~V~a~~ 226 (301)
T TIGR00511 190 GADAITANGALINKIGTSQLALAAREARVPFMVAAET 226 (301)
T ss_pred CccEEecCCCEEEHHhHHHHHHHHHHhCCCEEEEccc
Confidence 446666665332 3467889999999998654
No 402
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=28.16 E-value=4.7e+02 Score=27.66 Aligned_cols=116 Identities=11% Similarity=0.112 Sum_probs=61.7
Q ss_pred EEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHH--HHhhcCceeeeccchhHhhccCCccee
Q 010825 305 IYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFIASWCPQEEVLNHPAIGGF 382 (500)
Q Consensus 305 V~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~~pq~~lL~~~~~~~~ 382 (500)
-|++.|....+....-..+-.++...+.++|.+++.+.+.-. ..++. .+..-++.+ .+
T Consensus 393 ~~~~~~~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~~~----~~eL~ta~~~~l~v~i----------------vV 452 (548)
T PRK08978 393 NFITSSGLGTMGFGLPAAIGAQVARPDDTVICVSGDGSFMMN----VQELGTIKRKQLPVKI----------------VL 452 (548)
T ss_pred eEEeCCchhhhhchHHHHHHHHHhCCCCcEEEEEccchhhcc----HHHHHHHHHhCCCeEE----------------EE
Confidence 444433333333344444555566667788888876653210 11111 122223333 28
Q ss_pred EeecCchhHHHH--HhcCCceeeCCcccchhhhHHHhhhhhcc-eeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 383 FTHSGWNSTIES--LCAGVPMICWPFLGDQPTNCRYTCNEWGV-GLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 383 I~HgG~~s~~ea--l~~GvP~v~~P~~~DQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
++.+|+|.+... ..++.+.... .+.+.++.+..+ +.+|+ |.++ -+.++|.+++.+.+.
T Consensus 453 ~NN~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~la-~a~G~~~~~v--------~~~~el~~al~~a~~ 513 (548)
T PRK08978 453 LDNQRLGMVRQWQQLFFDERYSET-DLSDNPDFVMLA-SAFGIPGQTI--------TRKDQVEAALDTLLN 513 (548)
T ss_pred EeCCccHHHHHHHHHHhCCcceec-CCCCCCCHHHHH-HHCCCeEEEE--------CCHHHHHHHHHHHHh
Confidence 899999876432 3333222111 112346777777 55554 3444 678999999988874
No 403
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=28.00 E-value=4.4e+02 Score=28.07 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred hhhhhhcCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccch
Q 010825 291 ECLQWLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQ 370 (500)
Q Consensus 291 ~l~~~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq 370 (500)
++-+|.-.++...|++++||++.. .....++.|.+.+..+=++ |.++++-++.
T Consensus 491 ~~Gk~~i~~~G~~vail~~G~~~~----~al~vae~L~~~Gi~~TVv-----------------------d~rfvkPlD~ 543 (627)
T COG1154 491 EIGKGELLKEGEKVAILAFGTMLP----EALKVAEKLNAYGISVTVV-----------------------DPRFVKPLDE 543 (627)
T ss_pred cccceEEEecCCcEEEEecchhhH----HHHHHHHHHHhcCCCcEEE-----------------------cCeecCCCCH
Q ss_pred h---HhhccCCcceeEe------ecCchhHHHH--HhcC--CceeeCCc---ccchhhhHHHhhhhhcceeEeeeCCCCC
Q 010825 371 E---EVLNHPAIGGFFT------HSGWNSTIES--LCAG--VPMICWPF---LGDQPTNCRYTCNEWGVGLEIINGGDDN 434 (500)
Q Consensus 371 ~---~lL~~~~~~~~I~------HgG~~s~~ea--l~~G--vP~v~~P~---~~DQ~~na~~~~~~~G~g~~~~~~~~~~ 434 (500)
. .+.++-++ +|| +||.||-.-- ..+| +|++.+.+ |.||..-...+ + +-
T Consensus 544 ~ll~~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~-~-------------~~ 607 (627)
T COG1154 544 ALLLELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELL-A-------------EL 607 (627)
T ss_pred HHHHHHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHH-H-------------Hc
Q ss_pred CcCHHHHHHHHHHHh
Q 010825 435 RVSRNEVEKQVRELM 449 (500)
Q Consensus 435 ~~~~~~l~~~i~~vl 449 (500)
.++++.|.+.|...+
T Consensus 608 gLd~~~i~~~i~~~l 622 (627)
T COG1154 608 GLDAEGIARRILEWL 622 (627)
T ss_pred CCCHHHHHHHHHHHH
No 404
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=27.99 E-value=1.2e+02 Score=29.15 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCcC-c---HHHHHHHHHHHHhCCCEEEEEeC
Q 010825 9 SKVHAVCIPSPSQS-H---IKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 9 ~~~~il~~~~~~~G-H---~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
.|+||+++..+..+ | +.-...++++|.+.||+|.++..
T Consensus 2 ~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 2 KNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 47799999976555 2 45567889999999999988754
No 405
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=27.88 E-value=84 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=21.6
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||+||.+. ....+|+++|||++.++
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 899999986 35566899999998864
No 406
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=27.86 E-value=4.3e+02 Score=24.36 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=19.5
Q ss_pred CeeEEEEcCCcc----hHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLP----FTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~----~~~~~A~~lgiP~v~~ 150 (500)
++|.||+.+... .....+.+.|+|+|.+
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV 88 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE
Confidence 889988765432 2344556789999986
No 407
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=27.85 E-value=81 Score=28.74 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=23.6
Q ss_pred CeeEEEEcCCc--chHHHHHHHhCCCeEEEeccc
Q 010825 123 AVSCIISDGFL--PFTVTAAQQLGLPIVLLFTIS 154 (500)
Q Consensus 123 ~pDlvI~D~~~--~~~~~~A~~lgiP~v~~~~~~ 154 (500)
+||+||..... .....-....|+|++.+....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~ 93 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSS 93 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTT
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeeccc
Confidence 99999988766 356666778899999986654
No 408
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=27.84 E-value=4.2e+02 Score=23.33 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=47.3
Q ss_pred hHhhccCCcceeEeecCchhHHHH-------------Hhc--CCceeeCCcc----cch---hhhHHHhhhhhcceeEee
Q 010825 371 EEVLNHPAIGGFFTHSGWNSTIES-------------LCA--GVPMICWPFL----GDQ---PTNCRYTCNEWGVGLEII 428 (500)
Q Consensus 371 ~~lL~~~~~~~~I~HgG~~s~~ea-------------l~~--GvP~v~~P~~----~DQ---~~na~~~~~~~G~g~~~~ 428 (500)
..+...+|+ .+|.=+-+||+.-. +.. ++|++++|-. ... ..|..++ ++.|+-+.-+
T Consensus 72 i~l~~~aD~-~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L-~~~G~~vi~p 149 (182)
T PRK07313 72 IELAKRADL-FLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTL-KEDGVQEIEP 149 (182)
T ss_pred cccccccCE-EEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHH-HHCCCEEECC
Confidence 344455554 45655655544322 444 9999999963 333 4577778 5677666654
Q ss_pred e------CCC-C-CCcCHHHHHHHHHHHhC
Q 010825 429 N------GGD-D-NRVSRNEVEKQVRELMG 450 (500)
Q Consensus 429 ~------~~~-~-~~~~~~~l~~~i~~vl~ 450 (500)
. ++. . +-.+.++|.+.|.+.+.
T Consensus 150 ~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 150 KEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 3 211 1 46777888888887764
No 409
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.73 E-value=4.7e+02 Score=27.92 Aligned_cols=59 Identities=17% Similarity=0.323 Sum_probs=36.3
Q ss_pred eEeecCchhHHH--HHhcCCceeeCCcccchhhhHHHhhhhhcc-eeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 382 FFTHSGWNSTIE--SLCAGVPMICWPFLGDQPTNCRYTCNEWGV-GLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 382 ~I~HgG~~s~~e--al~~GvP~v~~P~~~DQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
++..||+|.+.. .+.++-+....- +...++.++.+ +.+|+ |.++ -+.++|.+++.+.++
T Consensus 470 V~NN~~~g~~~~~~~~~~~~~~~~~~-~~~~~d~~~la-~a~G~~~~~v--------~~~~el~~al~~a~~ 531 (586)
T PRK06276 470 IFDNRTLGMVYQWQNLYYGKRQSEVH-LGETPDFVKLA-ESYGVKADRV--------EKPDEIKEALKEAIK 531 (586)
T ss_pred EEeCCchHHHHHHHHHHhCCCccccc-CCCCCCHHHHH-HHCCCeEEEE--------CCHHHHHHHHHHHHh
Confidence 899999997653 344554432211 11235667766 65654 3333 678999999988864
No 410
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=27.66 E-value=1.1e+02 Score=30.98 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=31.7
Q ss_pred CcEEEEEcC--CCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 10 KVHAVCIPS--PSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 10 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+++|+.+.. |+.|-..-...||..|+.+|++|.++-.+.
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDp 160 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDP 160 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCC
Confidence 456555554 688999999999999999999999996544
No 411
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=27.63 E-value=4.5e+02 Score=25.94 Aligned_cols=96 Identities=10% Similarity=0.078 Sum_probs=57.4
Q ss_pred HHHHHHHhCC--CCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEe------ecCchhHHH
Q 010825 322 EVAMGLVNSN--HPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFT------HSGWNSTIE 393 (500)
Q Consensus 322 ~l~~al~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~------HgG~~s~~e 393 (500)
..+.++...+ .+++.+...+. +. .++..+..-+.-|-...+++...++-++.. +-+.--+.+
T Consensus 16 ~h~~al~~~~~~~eLvaV~d~~~---------er-A~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~ 85 (343)
T TIGR01761 16 FYLAAFAAAPERFELAGILAQGS---------ER-SRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALARA 85 (343)
T ss_pred HHHHHHHhCCCCcEEEEEEcCCH---------HH-HHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHH
Confidence 3556666544 56666665331 11 111222222235667788888888866664 233556788
Q ss_pred HHhcCCceee-CCcccchhhhHHHhhhhhcceeEe
Q 010825 394 SLCAGVPMIC-WPFLGDQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 394 al~~GvP~v~-~P~~~DQ~~na~~~~~~~G~g~~~ 427 (500)
|+.+|+.+++ =|+..++-.-...++++.|+=+.+
T Consensus 86 aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 86 LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999988 777766655555555666665555
No 412
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=27.44 E-value=1.4e+02 Score=22.06 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=28.1
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEe
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVN 45 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~ 45 (500)
+++...++.|-..-...++..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666678889999999999999999998887
No 413
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=27.44 E-value=4.9e+02 Score=23.90 Aligned_cols=32 Identities=9% Similarity=0.206 Sum_probs=27.0
Q ss_pred cCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 17 PSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 17 ~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.-|+.|-..-...||..|+++|++|.++-...
T Consensus 9 ~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~ 40 (261)
T TIGR01968 9 GKGGVGKTTTTANLGTALARLGKKVVLIDADI 40 (261)
T ss_pred CCCCccHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 34677899999999999999999999986543
No 414
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=27.43 E-value=1.3e+02 Score=26.60 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=22.3
Q ss_pred CeeEEEEcC--CcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDG--FLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~--~~~~~~~~A~~lgiP~v~~ 150 (500)
++|.|++=. -++.+..+|.++|+|+|.+
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 789999543 2236889999999999986
No 415
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.43 E-value=1.2e+02 Score=22.84 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=27.9
Q ss_pred cEEEEEcCCCc--CcHHHHHHHHHHHHhCCCEEEEEe
Q 010825 11 VHAVCIPSPSQ--SHIKAMLKLAKLLHHKGFHITFVN 45 (500)
Q Consensus 11 ~~il~~~~~~~--GH~~p~l~La~~L~~rGH~Vt~~~ 45 (500)
.+|+++|.... .+..-...++..|.+.|..|.+-.
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 46888887653 466778999999999999998754
No 416
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=27.42 E-value=5.5e+02 Score=24.53 Aligned_cols=112 Identities=9% Similarity=0.060 Sum_probs=0.0
Q ss_pred cccccCCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc--chhhhhhhcCCCCCCCCCCeeEEeCCCCCCCC
Q 010825 3 SKAIACSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF--NHRRFLKSRGEHSLGGLPSFRFEAIPDGLPAS 80 (500)
Q Consensus 3 ~~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~--~~~~v~~~~~~~~~~~~~~~~f~~l~~~~~~~ 80 (500)
+.+...+++||+++.++..+.+..++.-.+. -+-+++|.++.+.. .....++. ++.+..++......
T Consensus 82 ~l~~~~~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~~~~~lA~~~----------gIp~~~~~~~~~~~ 150 (286)
T PRK06027 82 RLLDSAERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHDDLRSLVERF----------GIPFHHVPVTKETK 150 (286)
T ss_pred EEcccccCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcChhHHHHHHHh----------CCCEEEeccCcccc
Q ss_pred CCCCCccccHHHHHHHHHHhccchHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-hHHHHHHHhCCCeEEEecc
Q 010825 81 SDESSTTQDMYSLCESIMNNVMLHPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~-~~~~~A~~lgiP~v~~~~~ 153 (500)
...-.++.+.+... +||+||+-.+.. ....+-+.+.-.++-+.|+
T Consensus 151 ----------------------~~~~~~~~~~l~~~------~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 151 ----------------------AEAEARLLELIDEY------QPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred ----------------------chhHHHHHHHHHHh------CCCEEEEecchhhcCHHHHhhccCCceecCcc
No 417
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=27.17 E-value=1.8e+02 Score=26.85 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=28.8
Q ss_pred EEEcCCCcCcHHHHHHHHHHHHh------------CCCEEEEEeCCcchh
Q 010825 14 VCIPSPSQSHIKAMLKLAKLLHH------------KGFHITFVNTEFNHR 51 (500)
Q Consensus 14 l~~~~~~~GH~~p~l~La~~L~~------------rGH~Vt~~~~~~~~~ 51 (500)
+++-.|+.|-..-.+.+|..++. ++-.|.+++.+...+
T Consensus 5 ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~ 54 (239)
T cd01125 5 ALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPRE 54 (239)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHH
Confidence 45666788888888888887653 567899999887654
No 418
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.96 E-value=73 Score=32.46 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=22.1
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||++|.... ...+|+++|||++.+.
T Consensus 369 ~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 369 KPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred CCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 9999998875 6678999999998763
No 419
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=26.85 E-value=94 Score=22.81 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhCCCEEEEEeCCc
Q 010825 26 AMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 26 p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.-+.+|..|+++|.+||++...+
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45789999999999999998754
No 420
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=26.84 E-value=91 Score=32.80 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=21.6
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||+||.+. ....+|+++|||++.++
T Consensus 362 ~PdliiG~~---~er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 362 APELVLGTQ---MERHSAKRLGIPCAVIS 387 (519)
T ss_pred CCCEEEEcc---hHHHHHHHcCCCEEEec
Confidence 899999875 46678999999998763
No 421
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.79 E-value=1.8e+02 Score=24.20 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
+.||++...++-+|-.----++..|...|++|........
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s 41 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQT 41 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCC
Confidence 6799999999999999999999999999999998876433
No 422
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=26.79 E-value=1.3e+02 Score=27.85 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=36.3
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRR 52 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~ 52 (500)
+|+++--++.|--.-...++.+|++.||+|..+.-++-.+.
T Consensus 3 ~iAiYGKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDS 43 (278)
T COG1348 3 QIAIYGKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADS 43 (278)
T ss_pred eEEEecCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcch
Confidence 78999999999999999999999999999999987665443
No 423
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=26.73 E-value=1.6e+02 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.262 Sum_probs=35.2
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhC-CCEEEEEeCCcchhhh
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHK-GFHITFVNTEFNHRRF 53 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~r-GH~Vt~~~~~~~~~~v 53 (500)
=+++...|+.|-....+.+|..++.+ |+.|.+++.+...+.+
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 46677788999999999999999998 6999999998776543
No 424
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=26.71 E-value=1.1e+02 Score=28.66 Aligned_cols=37 Identities=5% Similarity=-0.024 Sum_probs=31.4
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
.|++.--|+.|-..-...||..|+++|++|.++-.+.
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dp 40 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDP 40 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 5566667888999999999999999999999986443
No 425
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=26.52 E-value=1.8e+02 Score=25.95 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=25.2
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+..+||+|.-...++.-|++.|||++.+
T Consensus 29 ~i~~Visd~~~A~~lerA~~~gIpt~~~ 56 (200)
T COG0299 29 EIVAVISDKADAYALERAAKAGIPTVVL 56 (200)
T ss_pred EEEEEEeCCCCCHHHHHHHHcCCCEEEe
Confidence 6899999987777999999999999886
No 426
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.44 E-value=1.5e+02 Score=28.12 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=33.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
.-|+|+..++.|-..-...||..|+++|+.|.++..+.+
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 456666777889999999999999999999999998764
No 427
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=26.37 E-value=54 Score=30.57 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCcceeEeecCchhHHHHHhc----CCceeeCC
Q 010825 377 PAIGGFFTHSGWNSTIESLCA----GVPMICWP 405 (500)
Q Consensus 377 ~~~~~~I~HgG~~s~~eal~~----GvP~v~~P 405 (500)
+++ +|+-||-||+..+++. ++|++.+-
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 455 9999999999988664 67877654
No 428
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.31 E-value=7.6e+02 Score=26.47 Aligned_cols=119 Identities=9% Similarity=0.072 Sum_probs=63.2
Q ss_pred ceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHH--HHhhcCceeeeccchhHhhccCCcc
Q 010825 303 SVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFIASWCPQEEVLNHPAIG 380 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~~pq~~lL~~~~~~ 380 (500)
|.-|++.|....+.-..-..+-.++...+.++|.+.+.+.+.=. ...+. .+..-++.+ +
T Consensus 420 p~~~~~~~~~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~----~~EL~Ta~r~~lpvi~--------------v- 480 (595)
T PRK09107 420 PNRWMTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMC----IQEMSTAVQYNLPVKI--------------F- 480 (595)
T ss_pred CCeEEcCCCchhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhcc----HHHHHHHHHhCCCeEE--------------E-
Confidence 34555544444444444455555666666778877776553210 01110 111112222 2
Q ss_pred eeEeecCchhHHHH--HhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 381 GFFTHSGWNSTIES--LCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 381 ~~I~HgG~~s~~ea--l~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
+++.||+|.+... +.+|.+.... .....++.++.+ +-+| ... ..--+.++|.+++.+.+.
T Consensus 481 -V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~lA-~a~G--~~~-----~~v~~~~el~~al~~a~~ 542 (595)
T PRK09107 481 -ILNNQYMGMVRQWQQLLHGNRLSHS-YTEAMPDFVKLA-EAYG--AVG-----IRCEKPGDLDDAIQEMID 542 (595)
T ss_pred -EEeCCccHHHHHHHHHHhCCccccc-cCCCCCCHHHHH-HHCC--CeE-----EEECCHHHHHHHHHHHHh
Confidence 8999999987633 3345431111 111246777777 5454 333 233678999999998874
No 429
>PRK07206 hypothetical protein; Provisional
Probab=26.18 E-value=2e+02 Score=29.09 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=24.0
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
++|+++-..+. ...+++++.++|++|.++....
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 36777765332 3468899999999998888654
No 430
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=26.09 E-value=60 Score=29.44 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.0
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcch---HHHHH----HHhCCCeEEE
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLPF---TVTAA----QQLGLPIVLL 150 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~---~~~~A----~~lgiP~v~~ 150 (500)
+.+.++++++.. .||+||+|..-.. ...+| -.+|+|+|.+
T Consensus 81 p~l~~~~~~l~~-------~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGV 127 (208)
T cd06559 81 PPLLEALEKLKT-------KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGV 127 (208)
T ss_pred HHHHHHHHhCCC-------CCCEEEEeCCccccCCCcchhheeeeecCCCEEEE
Confidence 345666777642 7999999996542 33444 4567899987
No 431
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=26.06 E-value=2.5e+02 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHHHHHHHhCCCEEEEEeCCcch
Q 010825 27 MLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
...+.+.|.++|+.+.+++.....
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~ 115 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNA 115 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccH
Confidence 466778899999999999865443
No 432
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.95 E-value=2e+02 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.440 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc--hHHHHHHHhCCCeEEEecc
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP--FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~ 153 (500)
..+.++.+.+++. +..+|+++.... .+..+|+..|+|.+.+.+.
T Consensus 186 ~~l~~l~~~ik~~------~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 186 KDLAELIKLIKEN------KVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHHHT------T-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHHhhhc------CCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 3444555555555 889999998665 4677899999999886544
No 433
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=25.94 E-value=1.8e+02 Score=27.76 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=20.5
Q ss_pred CCcceeEeecCchhHHHHHhc-----CCcee-eCCc
Q 010825 377 PAIGGFFTHSGWNSTIESLCA-----GVPMI-CWPF 406 (500)
Q Consensus 377 ~~~~~~I~HgG~~s~~eal~~-----GvP~v-~~P~ 406 (500)
+++ +|.-||-||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999997643 34444 4886
No 434
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=25.90 E-value=1e+02 Score=25.87 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 28 LKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 28 l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
.-+|..|++.||+|++++.....+.+.+
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~~~~~~~ 38 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPRLEAIKE 38 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHHCCCceEEEEccccHHhhhh
Confidence 4578999999999999998774444444
No 435
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=25.89 E-value=1.6e+02 Score=27.51 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=30.6
Q ss_pred cEEEEEc-CCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 11 VHAVCIP-SPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~-~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
.|-.|+- -|+.|-..-...||-.|+..+|.|.++++++..
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAH 59 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAH 59 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCccc
Confidence 3433433 346688889999999999999999999987643
No 436
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.85 E-value=99 Score=32.44 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||+||.+. ....+|+++|||++.++
T Consensus 364 ~pdliiG~~---~er~~a~~lgip~~~i~ 389 (511)
T TIGR01278 364 EPELVLGTQ---MERHSAKRLDIPCGVIS 389 (511)
T ss_pred CCCEEEECh---HHHHHHHHcCCCEEEec
Confidence 899999986 46778999999998763
No 437
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.81 E-value=1e+02 Score=30.98 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=27.9
Q ss_pred eEeecCchhHHHHHhcCCceeeCCccc--chhhhHHHhhhhhcceeEe
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLG--DQPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~--DQ~~na~~~~~~~G~g~~~ 427 (500)
..|.||.--+.|-=.+|+|+|.+--.. -.-.-|.|++. ++++--
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~ 393 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPH 393 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCC
Confidence 566777777777788999999755422 22334667753 555544
No 438
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.73 E-value=1e+02 Score=30.99 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=26.8
Q ss_pred eEeecCchhHHHHHhcCCceeeCCcccc--hhhhHHHhhhhhcceeEe
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLGD--QPTNCRYTCNEWGVGLEI 427 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~D--Q~~na~~~~~~~G~g~~~ 427 (500)
..|.||.--+.|-=.+|+|+|.+--..+ .-.-|.|++ .++++-.
T Consensus 348 tCtrcga~m~keiE~~GIPvV~i~~~~pI~~~vGanRiv--~~~~i~~ 393 (431)
T TIGR01917 348 TCTRCGATMVKEIERAGIPVVHICTVTPIALTVGANRII--PAIAIPH 393 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeechhHHHhcCCCcee--cCCCCCC
Confidence 5677777777777789999998654332 222344553 3544444
No 439
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=25.71 E-value=91 Score=28.20 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=26.0
Q ss_pred hHHHHHHHHhhcCCCCCCCCeeEEEEcCCcc-------hHHHHHHHhCCCeEEEe
Q 010825 104 HPFLDLLAKLNDSSNSVNPAVSCIISDGFLP-------FTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 104 ~~l~~ll~~l~~~~~~~~~~pDlvI~D~~~~-------~~~~~A~~lgiP~v~~~ 151 (500)
+.+.++++++.. +||+|++|..-. .+.-++-.+++|+|.+.
T Consensus 77 P~~l~~l~~l~~-------~~dvilvDG~G~~HpR~~GlA~HlGv~l~iPtIGVA 124 (206)
T PF04493_consen 77 PCILEALEKLKN-------KPDVILVDGHGILHPRRFGLASHLGVLLDIPTIGVA 124 (206)
T ss_dssp HHHHHHHHTSSS---------SCEEEES-SSSSTTS--HHHHHHHHHTS-EEEEE
T ss_pred HHHHHHHHHhcc-------cCCEEEEeCceeecCCCcChhheeeeccCCCEEEEe
Confidence 555667777753 899999998554 23445667789999973
No 440
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=25.71 E-value=3.4e+02 Score=26.75 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGF-HITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~ 48 (500)
-.+.+|+++-.++-| ..+|+.|++.|+ +|+++-.+.
T Consensus 22 L~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCCc
Confidence 345789999888777 467888999998 888887643
No 441
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.60 E-value=1.6e+02 Score=25.24 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHHHhhcCCCCCCCCeeEEEEcCCcc----------hHHHHHHHhCCCeEEEeccchh
Q 010825 107 LDLLAKLNDSSNSVNPAVSCIISDGFLP----------FTVTAAQQLGLPIVLLFTISAC 156 (500)
Q Consensus 107 ~~ll~~l~~~~~~~~~~pDlvI~D~~~~----------~~~~~A~~lgiP~v~~~~~~~~ 156 (500)
+..+..++.. +-.+.||+|++..-.- -+..+|+++|+|+.-.+..+..
T Consensus 110 rnWlSQL~~h--AYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 110 RNWLSQLQTH--AYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HHHHHHHHHh--hccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 5555555433 3356999999865331 3567899999999987655443
No 442
>PRK05973 replicative DNA helicase; Provisional
Probab=25.59 E-value=1.9e+02 Score=26.86 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=39.0
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
++-=+++.-.|+.|-....+.++...+++|+.|.|++.+...+.+..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~ 109 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRD 109 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Confidence 44567788888999999999999999999999999998877654443
No 443
>PLN02240 UDP-glucose 4-epimerase
Probab=25.55 E-value=1.1e+02 Score=29.88 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
+++|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 5 ~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 5 GRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 4566653 566655 56778999999999998863
No 444
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=25.52 E-value=79 Score=30.69 Aligned_cols=40 Identities=10% Similarity=0.112 Sum_probs=30.6
Q ss_pred cEEEEEcCCCc---CcHHHHHHHHHHHHhCCCEEEEEeCCcch
Q 010825 11 VHAVCIPSPSQ---SHIKAMLKLAKLLHHKGFHITFVNTEFNH 50 (500)
Q Consensus 11 ~~il~~~~~~~---GH~~p~l~La~~L~~rGH~Vt~~~~~~~~ 50 (500)
|||+|+.-|-. -+.+-..+|.++-.+|||+|.++.+....
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 46777765532 25667889999999999999999987643
No 445
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=25.52 E-value=4.4e+02 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCEEEEEeCCc
Q 010825 27 MLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 27 ~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+..+.+.|.++|..+.+++...
T Consensus 48 v~e~L~~Lk~~g~~l~I~Sn~~ 69 (170)
T TIGR01668 48 LRDWIEELKAAGRKLLIVSNNA 69 (170)
T ss_pred HHHHHHHHHHcCCEEEEEeCCc
Confidence 4567788889999999999865
No 446
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=25.46 E-value=1.5e+02 Score=26.67 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
-++||.+=..|+.|-.+.|+.=|.+|.++|.+|.+...+.
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~vet 43 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVET 43 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE---
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEecC
Confidence 3589999999999999999999999999999999877653
No 447
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.38 E-value=5e+02 Score=23.28 Aligned_cols=151 Identities=9% Similarity=0.024 Sum_probs=80.8
Q ss_pred hhcCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhh-cCceeeeccchhHh
Q 010825 295 WLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAK-EKGFIASWCPQEEV 373 (500)
Q Consensus 295 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~nv~~~~~~pq~~l 373 (500)
|++-. .+.++.|..|.++ ...+..|...+.++.++ ... ..+.+.+..+ +.+.......+..-
T Consensus 5 ~l~l~-~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VI-s~~--------~~~~l~~l~~~~~i~~~~~~~~~~~ 67 (202)
T PRK06718 5 MIDLS-NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVI-SPE--------LTENLVKLVEEGKIRWKQKEFEPSD 67 (202)
T ss_pred EEEcC-CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEE-cCC--------CCHHHHHHHhCCCEEEEecCCChhh
Confidence 34433 3568888888775 34455566667665544 322 2222222222 23444444445667
Q ss_pred hccCCcceeEeecCchhHHHHHh----cCCceeeCCcccchhhhH-----HHhhhhhcceeEeeeCCCCCCcCHHHHHHH
Q 010825 374 LNHPAIGGFFTHSGWNSTIESLC----AGVPMICWPFLGDQPTNC-----RYTCNEWGVGLEIINGGDDNRVSRNEVEKQ 444 (500)
Q Consensus 374 L~~~~~~~~I~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na-----~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~ 444 (500)
+..+++ +|.--+.-.+.+.++ .++++-+ .|.+..+ ..+ ++-++-+.+ ........-+..|++.
T Consensus 68 l~~adl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~-~~g~l~iaI-sT~G~sP~la~~lr~~ 139 (202)
T PRK06718 68 IVDAFL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSAL-HRGKLTISV-STDGASPKLAKKIRDE 139 (202)
T ss_pred cCCceE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEE-EcCCeEEEE-ECCCCChHHHHHHHHH
Confidence 788887 998888777777665 4555444 3433322 222 233344444 1101122334667777
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHH
Q 010825 445 VRELMGGEKGKQMRNKASKWKRFAEEA 471 (500)
Q Consensus 445 i~~vl~~~~~~~~~~~a~~l~~~~~~~ 471 (500)
|..++.. +.+.+-+.+.++++.+++.
T Consensus 140 ie~~~~~-~~~~~~~~~~~~R~~~k~~ 165 (202)
T PRK06718 140 LEALYDE-SYESYIDFLYECRQKIKEL 165 (202)
T ss_pred HHHHcch-hHHHHHHHHHHHHHHHHHh
Confidence 8777633 2235677777888887763
No 448
>PRK12828 short chain dehydrogenase; Provisional
Probab=25.28 E-value=1.3e+02 Score=27.11 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
.+++++++ . ++.|.+ -..+++.|.++|++|.++...
T Consensus 5 ~~~k~vlI-t-Gatg~i--G~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 5 LQGKVVAI-T-GGFGGL--GRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CCCCEEEE-E-CCCCcH--hHHHHHHHHHCCCeEEEEeCC
Confidence 33445444 3 455655 588899999999999888753
No 449
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=25.16 E-value=1.1e+02 Score=31.30 Aligned_cols=26 Identities=12% Similarity=0.239 Sum_probs=21.4
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~~ 151 (500)
+||++|.+.. ...+|+++|+|++.++
T Consensus 370 ~pdliig~~~---~~~~a~~~gip~~~~~ 395 (430)
T cd01981 370 EPELIFGTQM---ERHIGKRLDIPCAVIS 395 (430)
T ss_pred CCCEEEecch---hhHHHHHcCCCEEEEe
Confidence 8999999863 4557899999999874
No 450
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=25.13 E-value=1.4e+02 Score=24.36 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=27.4
Q ss_pred EEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 13 AVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 13 il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
++++..|..++-.-+..+++.|+++|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566667777777799999999999999988844
No 451
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=25.04 E-value=1e+02 Score=28.66 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCCCCCCeeEEEEcCCcch---HHHHHHHhCCCeEEEec
Q 010825 106 FLDLLAKLNDSSNSVNPAVSCIISDGFLPF---TVTAAQQLGLPIVLLFT 152 (500)
Q Consensus 106 l~~ll~~l~~~~~~~~~~pDlvI~D~~~~~---~~~~A~~lgiP~v~~~~ 152 (500)
++.+++. +||+||....... .-.+.+..|+|++.+..
T Consensus 67 ~E~i~~l----------~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~ 106 (262)
T cd01147 67 YEKIAAL----------KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDG 106 (262)
T ss_pred HHHHHhc----------CCCEEEEecCCccchhHHHHHHhhCCCEEEEec
No 452
>PLN02891 IMP cyclohydrolase
Probab=24.98 E-value=3e+02 Score=28.80 Aligned_cols=47 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred CcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhhcCCCCCCCCCCeeEEeCCC--CCCCC
Q 010825 22 SHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKSRGEHSLGGLPSFRFEAIPD--GLPAS 80 (500)
Q Consensus 22 GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~~~~~~~~~~~~~~f~~l~~--~~~~~ 80 (500)
++=.-+..+|+.|.+.|.+ ++++....+.+.+. ++.+..+.+ ++|+.
T Consensus 30 sDKtgi~~fAk~L~~~gve--IiSTgGTak~L~e~----------Gi~v~~Vsd~TgfPEi 78 (547)
T PLN02891 30 SDKTDLALLANGLQELGYT--IVSTGGTASALEAA----------GVSVTKVEELTNFPEM 78 (547)
T ss_pred ecccCHHHHHHHHHHCCCE--EEEcchHHHHHHHc----------CCceeeHHhccCCchh
Confidence 3444578899999998766 56776666667665 566666542 45544
No 453
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=24.97 E-value=2.1e+02 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCcCcHHHHHHHHHHHHhCC-CEEEEEeCCc
Q 010825 9 SKVHAVCIPSPSQSHIKAMLKLAKLLHHKG-FHITFVNTEF 48 (500)
Q Consensus 9 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG-H~Vt~~~~~~ 48 (500)
...+|+++-.++.|- .+|+.|++.| .++|++-...
T Consensus 29 ~~s~VlVvG~GGVGs-----~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGS-----WAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHH-----HHHHHHHHcCCCEEEEEeCCE
Confidence 457899998887774 5789999999 7888887654
No 454
>PRK13695 putative NTPase; Provisional
Probab=24.96 E-value=4.5e+02 Score=22.60 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=28.3
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEE
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFV 44 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~ 44 (500)
|+|++.-.++.|=..-+..++..|..+|+.+.-+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~~g~ 34 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKVGGF 34 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 6889998889998888888999998889886533
No 455
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=24.91 E-value=1.4e+02 Score=28.49 Aligned_cols=31 Identities=16% Similarity=0.356 Sum_probs=20.9
Q ss_pred CeeEEEEcCCcc------hHHHHHHHhCCCeEEEecc
Q 010825 123 AVSCIISDGFLP------FTVTAAQQLGLPIVLLFTI 153 (500)
Q Consensus 123 ~pDlvI~D~~~~------~~~~~A~~lgiP~v~~~~~ 153 (500)
+.|.|..+.... ....+|+.+|+|+++..++
T Consensus 184 GAD~I~~nG~v~NKiGT~~lA~~Ak~~~vPfyV~a~~ 220 (275)
T PRK08335 184 GADNVTRDGYVVNKAGTYLLALACHDNGVPFYVAAET 220 (275)
T ss_pred CccEEecCCCEeehhhHHHHHHHHHHcCCCEEEECcc
Confidence 446666565322 3467889999999998554
No 456
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=24.90 E-value=2.4e+02 Score=24.72 Aligned_cols=47 Identities=9% Similarity=0.183 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHhCCCCChHHHH
Q 010825 436 VSRNEVEKQVRELMGGEKGKQMRNKASKWKRFAEEATAPDGSSATNL 482 (500)
Q Consensus 436 ~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~~~~~~~~~~~g~~~~~~ 482 (500)
+|.++..+.+++-|.+-..++.++......+-+.++.++|.+-++.+
T Consensus 1 M~k~efL~~L~~~L~~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii 47 (181)
T PF08006_consen 1 MNKNEFLNELEKYLKKLPEEEREEILEYYEEYFDDAGEEGKSEEEII 47 (181)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHH
Confidence 45666666666666532222466667777777776654444433333
No 457
>PLN00016 RNA-binding protein; Provisional
Probab=24.89 E-value=89 Score=31.17 Aligned_cols=39 Identities=23% Similarity=0.212 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+++|+++..-+.|+=.--..|++.|.++||+|+.++-..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 357877733333333445678899999999999988643
No 458
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=24.75 E-value=1e+02 Score=31.00 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=36.2
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhhhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRFLKS 56 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v~~~ 56 (500)
+++|++...++.. .+....+++.|.++|++|.++.++.....+...
T Consensus 4 ~k~ill~v~gsia-ayk~~~l~r~L~~~ga~v~vvmt~~a~~fv~p~ 49 (392)
T COG0452 4 GKRILLGVTGSIA-AYKSVELVRLLRRSGAEVRVVMTESARKFITPL 49 (392)
T ss_pred CceEEEEecCchh-hhhHHHHHHHHhhCCCeeEEEcchhhhhhcCcc
Confidence 4488888766654 455689999999999999999998877766553
No 459
>PRK06988 putative formyltransferase; Provisional
Probab=24.70 E-value=5.1e+02 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
|||+|+..+. ..+...+.|.++||+|..+.+.
T Consensus 3 mkIvf~Gs~~-----~a~~~L~~L~~~~~~i~~Vvt~ 34 (312)
T PRK06988 3 PRAVVFAYHN-----VGVRCLQVLLARGVDVALVVTH 34 (312)
T ss_pred cEEEEEeCcH-----HHHHHHHHHHhCCCCEEEEEcC
Confidence 6899885443 4456677888889999877664
No 460
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=24.57 E-value=1.3e+02 Score=28.43 Aligned_cols=37 Identities=11% Similarity=0.077 Sum_probs=32.3
Q ss_pred EEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 12 HAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 12 ~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+|+|+-=|+.|-..-...||..|+++|++|.++--+.
T Consensus 3 ~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dp 39 (279)
T PRK13230 3 KFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCDP 39 (279)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCC
Confidence 6777777888999999999999999999999986544
No 461
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=24.50 E-value=6.1e+02 Score=24.26 Aligned_cols=114 Identities=14% Similarity=0.035 Sum_probs=68.4
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCce
Q 010825 322 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPM 401 (500)
Q Consensus 322 ~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 401 (500)
.+++.++..+..+++..+.... +++.|.+..+.+++ ==||++ .=.+.|.+.+..|+..|...
T Consensus 156 ~~~~~l~~~~~Dlivlagy~~i------l~~~~l~~~~~~ii----------NiHpSL--LP~~rG~~~~~~ai~~G~~~ 217 (286)
T PRK13011 156 QVLDVVEESGAELVVLARYMQV------LSPELCRKLAGRAI----------NIHHSF--LPGFKGAKPYHQAYERGVKL 217 (286)
T ss_pred HHHHHHHHhCcCEEEEeChhhh------CCHHHHhhccCCeE----------Eecccc--CCCCCCCcHHHHHHHCCCCe
Confidence 4566677777777777765443 56666554432221 114443 34457899999999999999
Q ss_pred eeCCccc--chhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010825 402 ICWPFLG--DQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKWK 465 (500)
Q Consensus 402 v~~P~~~--DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l~ 465 (500)
..+-++. +..+-.-.+ ..-.+.+ ...-|.++|.+.+.++-. . .|-+.++.+.
T Consensus 218 tG~TvH~v~~~~D~G~Ii---~Q~~v~I-----~~~dt~~~L~~r~~~~E~-~---~~~~ai~~~~ 271 (286)
T PRK13011 218 IGATAHYVTDDLDEGPII---EQDVERV-----DHAYSPEDLVAKGRDVEC-L---TLARAVKAHI 271 (286)
T ss_pred EEEEEEEEcCCCcCCCcE---EEEEEEc-----CCCCCHHHHHHHHHHHHH-H---HHHHHHHHHH
Confidence 8877642 333444434 2334555 556788999988876432 2 2555555444
No 462
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=24.50 E-value=7.1e+02 Score=26.55 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=36.5
Q ss_pred eEeecCchhHH-HHHhcCCceeeCCcccchhhhHHHhhhhhcc-eeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 382 FFTHSGWNSTI-ESLCAGVPMICWPFLGDQPTNCRYTCNEWGV-GLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 382 ~I~HgG~~s~~-eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
++..||+|.+. +....|.+... .....++.++.+ +-+|+ +.++ -+.++|.+++++.++
T Consensus 459 V~NN~~~g~i~~~q~~~~~~~~~--~~~~~~df~~lA-~a~G~~~~~v--------~~~~el~~al~~a~~ 518 (578)
T PRK06546 459 VFNNSTLGMVKLEMLVDGLPDFG--TDHPPVDYAAIA-AALGIHAVRV--------EDPKDVRGALREAFA 518 (578)
T ss_pred EEECCccccHHHHHHhcCCCccc--ccCCCCCHHHHH-HHCCCeeEEe--------CCHHHHHHHHHHHHh
Confidence 89999999874 22233333211 112346777777 66665 4444 478999999999863
No 463
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=24.49 E-value=1.1e+02 Score=33.05 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNT 46 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~ 46 (500)
..+++|+++..----.+.-+-.....|+++||+|+++.-
T Consensus 367 ~~~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~ 405 (652)
T PRK02122 367 PYPKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQ 405 (652)
T ss_pred cCCceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEe
Confidence 444666555543334667777777889999999998754
No 464
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=24.46 E-value=1.3e+02 Score=28.43 Aligned_cols=41 Identities=7% Similarity=0.001 Sum_probs=34.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
.+|+++--++.|--.-...|+.+|+..|++|..+.-++-.+
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHHhccceeeEecccCCCc
Confidence 37999999999999999999999999999999998765444
No 465
>PRK07574 formate dehydrogenase; Provisional
Probab=24.42 E-value=4.3e+02 Score=26.60 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=57.6
Q ss_pred CceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcce
Q 010825 302 NSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 302 ~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
+.+-++.+|.+. +.++..+...+.+++.. .... .+..... ..+ +.......++++.+|+
T Consensus 193 ktVGIvG~G~IG-------~~vA~~l~~fG~~V~~~-dr~~-------~~~~~~~--~~g--~~~~~~l~ell~~aDv-- 251 (385)
T PRK07574 193 MTVGIVGAGRIG-------LAVLRRLKPFDVKLHYT-DRHR-------LPEEVEQ--ELG--LTYHVSFDSLVSVCDV-- 251 (385)
T ss_pred CEEEEECCCHHH-------HHHHHHHHhCCCEEEEE-CCCC-------CchhhHh--hcC--ceecCCHHHHhhcCCE--
Confidence 458899999987 55666677777766533 2211 1111111 011 2223456789999998
Q ss_pred eEeecCchhHHHHHhcCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHH
Q 010825 382 FFTHSGWNSTIESLCAGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVR 446 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~ 446 (500)
++.|+-.+.-.+. ..|+..+ +.+.=|..++|-.+...++.++|.++++
T Consensus 252 V~l~lPlt~~T~~----------------li~~~~l-~~mk~ga~lIN~aRG~iVDe~AL~~AL~ 299 (385)
T PRK07574 252 VTIHCPLHPETEH----------------LFDADVL-SRMKRGSYLVNTARGKIVDRDAVVRALE 299 (385)
T ss_pred EEEcCCCCHHHHH----------------HhCHHHH-hcCCCCcEEEECCCCchhhHHHHHHHHH
Confidence 8887765543322 3344444 3444444444444444555555555554
No 466
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=24.20 E-value=1.8e+02 Score=29.36 Aligned_cols=46 Identities=17% Similarity=0.354 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHH---HHhCCCeEEEeccchhHH
Q 010825 107 LDLLAKLNDSSNSVNPAVSCIISDGFLP----FTVTAA---QQLGLPIVLLFTISACSF 158 (500)
Q Consensus 107 ~~ll~~l~~~~~~~~~~pDlvI~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~ 158 (500)
.++.+++++. ++|.||..+.|. |+..++ ++.|||+|.+.+....+.
T Consensus 326 ~eIa~~Lk~d------gVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis~ 378 (431)
T TIGR01918 326 KEFVVELKQG------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIAL 378 (431)
T ss_pred HHHHHHHHHc------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHhh
Confidence 5666777765 999999887665 566665 467999999876655443
No 467
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.17 E-value=1.9e+02 Score=29.23 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=33.1
Q ss_pred HHHHHHhhcCCCCCCCCeeEEEEcCCcc----hHHHHH---HHhCCCeEEEeccchhHH
Q 010825 107 LDLLAKLNDSSNSVNPAVSCIISDGFLP----FTVTAA---QQLGLPIVLLFTISACSF 158 (500)
Q Consensus 107 ~~ll~~l~~~~~~~~~~pDlvI~D~~~~----~~~~~A---~~lgiP~v~~~~~~~~~~ 158 (500)
.++.++|++. +.|.||..+.|. |+..++ ++.|||+|.+.+......
T Consensus 326 ~eIa~~Lk~d------gVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~~ 378 (431)
T TIGR01917 326 KEFSKELLAA------GVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIAL 378 (431)
T ss_pred HHHHHHHHHc------CCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHHH
Confidence 5666777765 999999887665 566665 466999999876655443
No 468
>PRK08939 primosomal protein DnaI; Reviewed
Probab=24.13 E-value=1.3e+02 Score=29.10 Aligned_cols=44 Identities=14% Similarity=-0.002 Sum_probs=37.0
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchhhh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHRRF 53 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~~v 53 (500)
+..+.+.-.+|.|-..=+.++|.+|.++|..|+|+..+.+...+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 45788888889998888899999999999999999887655444
No 469
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.11 E-value=2e+02 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.228 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCC-EEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGF-HITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH-~Vt~~~~~~ 48 (500)
-.+.||+++-.++.|- .+++.|++.|. +++++-.+.
T Consensus 9 L~~~~VlVvG~GGvGs-----~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGS-----WAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHH-----HHHHHHHHcCCCEEEEECCCE
Confidence 3467899998888773 57889999985 777776654
No 470
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=23.95 E-value=1.1e+02 Score=26.16 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=21.7
Q ss_pred CeeEEEEcCCcc---hHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLP---FTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~---~~~~~A~~lgiP~v~~~ 151 (500)
+||+|+.-.... .+..+|.++|.|++.-.
T Consensus 90 ~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 90 GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred CCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 899999886544 46788999999999853
No 471
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=23.94 E-value=1.1e+02 Score=26.56 Aligned_cols=35 Identities=23% Similarity=0.092 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcc
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFN 49 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~ 49 (500)
.++|+++-++++||. .|.-|.+.|++|++...+..
T Consensus 4 ~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s 38 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGS 38 (165)
T ss_dssp TSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTC
T ss_pred CCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCC
Confidence 579999999999985 57789999999999886654
No 472
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.94 E-value=5.5e+02 Score=24.64 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHHHHhcCCce
Q 010825 322 EVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIESLCAGVPM 401 (500)
Q Consensus 322 ~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~eal~~GvP~ 401 (500)
.+++.++..+..+++..+-... +++.|.+..+.+++ ==|+++ .=-..|.+....|+..|+..
T Consensus 160 ~~~~~l~~~~~Dlivlagym~i------l~~~~l~~~~~~ii----------NiHpSl--LP~f~G~~~~~~ai~~G~k~ 221 (289)
T PRK13010 160 QILDLIETSGAELVVLARYMQV------LSDDLSRKLSGRAI----------NIHHSF--LPGFKGARPYHQAHARGVKL 221 (289)
T ss_pred HHHHHHHHhCCCEEEEehhhhh------CCHHHHhhccCCce----------eeCccc--CCCCCCCCHHHHHHHcCCCe
Confidence 4566677777777777665432 55666544332222 113333 23346889999999999999
Q ss_pred eeCCcc--cchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCChhHHHHHHHHHH
Q 010825 402 ICWPFL--GDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEKGKQMRNKASKW 464 (500)
Q Consensus 402 v~~P~~--~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~~~~~~~~a~~l 464 (500)
..+-.+ .+..+.+..+ . .--+.+ +..-|.++|.+.+.++-.. .|-+.++.+
T Consensus 222 tG~TvH~v~~~lD~GpII-~--Q~~v~V-----~~~dt~e~L~~r~~~~E~~----~l~~ai~~~ 274 (289)
T PRK13010 222 IGATAHFVTDDLDEGPII-E--QDVERV-----DHSYSPEDLVAKGRDVECL----TLARAVKAF 274 (289)
T ss_pred EEEEEEEEcCCCCCCCce-E--EEEEEc-----CCCCCHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 887764 2344444444 2 334445 4456788888888765432 155444444
No 473
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=23.94 E-value=3.3e+02 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.361 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEEcCC
Q 010825 316 NKQQLIEVAMGLVNSNHPFLWIIRPD 341 (500)
Q Consensus 316 ~~~~~~~l~~al~~~~~~~v~~~~~~ 341 (500)
-+.+++.++++|.+.|+.+.+....+
T Consensus 9 ~p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 9 FPGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred CchhHHHHHHHHHHCCCEEEEEecCC
Confidence 34567889999988888877665443
No 474
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=23.87 E-value=1.7e+02 Score=27.61 Aligned_cols=44 Identities=9% Similarity=0.071 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
.+...|.+.-.|+-|--.-.-+|++.|.++||+|.+++.++...
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 34568888888999999999999999999999999998766543
No 475
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=23.85 E-value=84 Score=29.86 Aligned_cols=28 Identities=11% Similarity=0.115 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCEEEEEeCCcchhhhhh
Q 010825 28 LKLAKLLHHKGFHITFVNTEFNHRRFLK 55 (500)
Q Consensus 28 l~La~~L~~rGH~Vt~~~~~~~~~~v~~ 55 (500)
..+|..|++.||+|+++......+.+.+
T Consensus 4 ~~~a~~L~~~G~~V~l~~r~~~~~~i~~ 31 (293)
T TIGR00745 4 SLYGAYLARAGHDVTLLARGEQLEALNQ 31 (293)
T ss_pred HHHHHHHHhCCCcEEEEecHHHHHHHHH
Confidence 3578899999999999987533344433
No 476
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=23.82 E-value=1.1e+02 Score=31.19 Aligned_cols=25 Identities=20% Similarity=0.628 Sum_probs=21.6
Q ss_pred CeeEEEEcCCcchHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLPFTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~~~~~~A~~lgiP~v~~ 150 (500)
+||++|.+.. ...+|+++|||++.+
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEe
Confidence 8999999864 578999999999875
No 477
>PLN02859 glutamine-tRNA ligase
Probab=23.81 E-value=1.4e+02 Score=32.90 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=42.0
Q ss_pred hhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCCh----hHHHHHHHHHHHHHHHHHh--CCCCChHHHHHH
Q 010825 411 PTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGEK----GKQMRNKASKWKRFAEEAT--APDGSSATNLEK 484 (500)
Q Consensus 411 ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~~----~~~~~~~a~~l~~~~~~~~--~~~g~~~~~~~~ 484 (500)
.+.+..- ++.|+|+.+ |+|+|.++|.+++++.. -+.|+.|+..+-..++..+ +.+......++.
T Consensus 104 ~d~~~Fe-k~CGVGV~V---------T~EqI~~~V~~~i~~~k~~il~~RY~~n~g~ll~~~r~~Lkwad~~~~k~~id~ 173 (788)
T PLN02859 104 FDLNKFE-EACGVGVVV---------SPEDIEAAVNEVFEENKEKILEQRYRTNVGDLLGQVRKRLPWADPKIVKKLIDK 173 (788)
T ss_pred cCHHHHH-HhCCCCEEE---------CHHHHHHHHHHHHHhhHHHHHHhcccccHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 3344444 678999999 89999999999997542 1246666555555555533 233333344554
Q ss_pred HHHHH
Q 010825 485 LVNQV 489 (500)
Q Consensus 485 l~~~~ 489 (500)
-+-++
T Consensus 174 ~~~~l 178 (788)
T PLN02859 174 KLYEL 178 (788)
T ss_pred HHHHh
Confidence 44444
No 478
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.79 E-value=1.5e+02 Score=28.12 Aligned_cols=54 Identities=19% Similarity=0.333 Sum_probs=37.0
Q ss_pred cCCcceeEeecCchhHHHHHhc-CCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHHHHHhCCC
Q 010825 376 HPAIGGFFTHSGWNSTIESLCA-GVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQVRELMGGE 452 (500)
Q Consensus 376 ~~~~~~~I~HgG~~s~~eal~~-GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i~~vl~~~ 452 (500)
.+++ +|+=||-||+..+++. .+|++.+-. -+ +| -. ..++.+++.+++.++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~--------G~----lG--FL-------~~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINM--------GG----LG--FL-------TEIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEEC--------CC----Cc--cC-------cccCHHHHHHHHHHHHcCC
Confidence 4566 9999999999999884 456654321 11 11 11 2467889999999999865
No 479
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=23.70 E-value=1.6e+02 Score=24.68 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=30.7
Q ss_pred hhcCCCCCceEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEc
Q 010825 295 WLDSKEPNSVIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIR 339 (500)
Q Consensus 295 ~l~~~~~~~vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~ 339 (500)
..+......+|++++||--....+.++++++.+. .+.+++++..
T Consensus 44 ~~~~~~~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 44 LKDSGKLRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred HHHcCCCCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3333334568999999987677888888888774 3567766654
No 480
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=23.64 E-value=3e+02 Score=28.66 Aligned_cols=33 Identities=15% Similarity=0.381 Sum_probs=25.4
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhC--CCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHK--GFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~r--GH~Vt~~~~~~ 48 (500)
|||+++-.+++.| +|++.|.+. |++|.++....
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g~~ 35 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSSYL 35 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEECCC
Confidence 6899988888887 467778776 99988885433
No 481
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=23.61 E-value=1.6e+02 Score=28.59 Aligned_cols=74 Identities=11% Similarity=0.061 Sum_probs=43.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHHHHhhcCceeeeccchhHhhccCCcceeEeecCchhHHH
Q 010825 314 IMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFEVKAKEKGFIASWCPQEEVLNHPAIGGFFTHSGWNSTIE 393 (500)
Q Consensus 314 ~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~~~~pq~~lL~~~~~~~~I~HgG~~s~~e 393 (500)
....+..+.|.+++.....+.||.+.++.. -.++.++++...+-+++.+ ||-.+-..+++-
T Consensus 49 g~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g-----------------~~rlL~~lD~~~i~~~PK~--fiGySDiTaL~~ 109 (308)
T cd07062 49 ASPEERAEELMAAFADPSIKAIIPTIGGDD-----------------SNELLPYLDYELIKKNPKI--FIGYSDITALHL 109 (308)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEECCcccC-----------------HhhhhhhcCHHHHhhCCCE--EEeccHHHHHHH
Confidence 334556777999999888999999876542 1233444444444455544 555555555555
Q ss_pred HHh--cCCceeeCCc
Q 010825 394 SLC--AGVPMICWPF 406 (500)
Q Consensus 394 al~--~GvP~v~~P~ 406 (500)
+++ +|++.+-=|.
T Consensus 110 al~~~~g~~t~hGp~ 124 (308)
T cd07062 110 AIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHhcCCeEEECcc
Confidence 553 2444444443
No 482
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=23.56 E-value=1.8e+02 Score=26.85 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=30.8
Q ss_pred cCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 17 PSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 17 ~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
+-||-|-..-.+.||.+|+++|-.|+++-.++++.
T Consensus 9 ~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 44688999999999999999999999999877654
No 483
>PRK12829 short chain dehydrogenase; Provisional
Probab=23.36 E-value=1.5e+02 Score=27.46 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCC
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTE 47 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~ 47 (500)
.+++++++. ++.|.+ ...+++.|.++||+|+.+.-.
T Consensus 9 ~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeCC
Confidence 455565554 444555 578899999999999887753
No 484
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=23.31 E-value=1.7e+02 Score=30.02 Aligned_cols=42 Identities=14% Similarity=0.242 Sum_probs=36.4
Q ss_pred CcEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCcchh
Q 010825 10 KVHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEFNHR 51 (500)
Q Consensus 10 ~~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~~~~ 51 (500)
+..|+++-.++.|-..-...||..|.++|+.|.+++.+.++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 456788888899999999999999999999999999876644
No 485
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=23.27 E-value=6.9e+02 Score=24.19 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=19.1
Q ss_pred CeeEEEEcCCcc----hHHHHHHHhCCCeEEE
Q 010825 123 AVSCIISDGFLP----FTVTAAQQLGLPIVLL 150 (500)
Q Consensus 123 ~pDlvI~D~~~~----~~~~~A~~lgiP~v~~ 150 (500)
++|.||...... .....+...|+|+|.+
T Consensus 81 ~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 81 GVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred CCCEEEEeCCChhhHHHHHHHHHHCCCeEEEE
Confidence 889998865431 2334556778999987
No 486
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.10 E-value=6.9e+02 Score=26.57 Aligned_cols=117 Identities=9% Similarity=0.061 Sum_probs=62.4
Q ss_pred eEEEeeccccccCHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCCCCCchHHH--HHhhcCceeeeccchhHhhccCCcce
Q 010825 304 VIYVNFGSIIIMNKQQLIEVAMGLVNSNHPFLWIIRPDLVTGETADLPAEFE--VKAKEKGFIASWCPQEEVLNHPAIGG 381 (500)
Q Consensus 304 vV~vs~Gs~~~~~~~~~~~l~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~nv~~~~~~pq~~lL~~~~~~~ 381 (500)
.-|++.|+...+.-..-..+-.++...+.++|.+.+.+.+.= -..++. .+..-++. -.
T Consensus 412 ~~~~~~~~~g~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m----~~~EL~Ta~r~~lpv~----------------~v 471 (572)
T PRK08979 412 RRWINSGGLGTMGFGLPAAMGVKFAMPDETVVCVTGDGSIQM----NIQELSTALQYDIPVK----------------II 471 (572)
T ss_pred CeEEccCCcccccchhhHHHhhhhhCCCCeEEEEEcchHhhc----cHHHHHHHHHcCCCeE----------------EE
Confidence 345554444444444445555566666678887777654311 001111 01111122 23
Q ss_pred eEeecCchhHHHH--HhcCCceeeCCcccchhhhHHHhhhhhcc-eeEeeeCCCCCCcCHHHHHHHHHHHhC
Q 010825 382 FFTHSGWNSTIES--LCAGVPMICWPFLGDQPTNCRYTCNEWGV-GLEIINGGDDNRVSRNEVEKQVRELMG 450 (500)
Q Consensus 382 ~I~HgG~~s~~ea--l~~GvP~v~~P~~~DQ~~na~~~~~~~G~-g~~~~~~~~~~~~~~~~l~~~i~~vl~ 450 (500)
+++.||+|.+... ..++-+.... .....++.++.+ +.+|+ |.++ -+.++|..++.+.+.
T Consensus 472 V~NN~~y~~i~~~q~~~~~~~~~~~-~~~~~~d~~~~A-~a~G~~~~~v--------~~~~eL~~al~~a~~ 533 (572)
T PRK08979 472 NLNNRFLGMVKQWQDMIYQGRHSHS-YMDSVPDFAKIA-EAYGHVGIRI--------SDPDELESGLEKALA 533 (572)
T ss_pred EEeCCccHHHHHHHHHHhCCccccc-CCCCCCCHHHHH-HHCCCeEEEE--------CCHHHHHHHHHHHHh
Confidence 8999999987533 3334332111 111236677777 65665 4555 678999999998875
No 487
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=23.07 E-value=1.5e+02 Score=26.30 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=21.7
Q ss_pred eEEEEcCCc-chHHHHHHHhCCCeEEEeccch
Q 010825 125 SCIISDGFL-PFTVTAAQQLGLPIVLLFTISA 155 (500)
Q Consensus 125 DlvI~D~~~-~~~~~~A~~lgiP~v~~~~~~~ 155 (500)
.++|-.++- +++..+|+++|+|.|.+.|+..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 355555443 3678899999999998866633
No 488
>PF02635 DrsE: DsrE/DsrF-like family; InterPro: IPR003787 Four small, soluble proteins (DsrE, DsrF, DsrH and DsrC) are encoded in the dsr gene region of the phototrophic sulphur bacterium Chromatium vinosum D. The dsrAB genes encoding dissimilatory sulphite reductase are part of the gene cluster, dsrABEFHCMK. The remaining proteins that are encoded are a transmembrane protein (DsrM) with similarity to haem-b-binding polypeptides and a soluble protein (DsrK) resembling [4Fe-4S]-cluster-containing heterodisulphide reductase from methanogenic archaea. DsrE is a small soluble protein involved in intracellular sulphur reduction [].; PDB: 1L1S_A 2HYB_B 2HY5_B 2PD2_B 3MC3_A 2D1P_H 1JX7_B 2FB6_A.
Probab=23.04 E-value=2.8e+02 Score=21.75 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=27.8
Q ss_pred EEEEEcC--CCcCc-HHHHHHHHHHHHhCC---CEEEEEeCCcchhh
Q 010825 12 HAVCIPS--PSQSH-IKAMLKLAKLLHHKG---FHITFVNTEFNHRR 52 (500)
Q Consensus 12 ~il~~~~--~~~GH-~~p~l~La~~L~~rG---H~Vt~~~~~~~~~~ 52 (500)
+|+++-. |.... ..-.+.++..+...| |+|+++........
T Consensus 2 ~v~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~g~gv~~ 48 (122)
T PF02635_consen 2 KVFFIVTSGPYDDERAKIALRLANAAAAMGDYGHDVVVFFHGDGVKL 48 (122)
T ss_dssp EEEEEE-S-TTTBSHHHHHHHHHHHHHHTTHTTSEEEEEE-GGGGGG
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHHcCCCCCcEEEEEEchHHHH
Confidence 4555544 33333 677888899999999 99999988765543
No 489
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=22.97 E-value=3.1e+02 Score=23.63 Aligned_cols=26 Identities=12% Similarity=0.124 Sum_probs=20.3
Q ss_pred eeEeecCc------hhHHHHHhcCCceeeCCc
Q 010825 381 GFFTHSGW------NSTIESLCAGVPMICWPF 406 (500)
Q Consensus 381 ~~I~HgG~------~s~~eal~~GvP~v~~P~ 406 (500)
.+++|.|- +++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 38888874 478889999999999864
No 490
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=22.94 E-value=7.6e+02 Score=24.60 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=50.4
Q ss_pred cCHHHHHHHHHH-HHh-CCCCEEEEEcCCCCCCCCCCCchHHHH-HhhcCceeeeccchh---HhhccCCcceeEeecC-
Q 010825 315 MNKQQLIEVAMG-LVN-SNHPFLWIIRPDLVTGETADLPAEFEV-KAKEKGFIASWCPQE---EVLNHPAIGGFFTHSG- 387 (500)
Q Consensus 315 ~~~~~~~~l~~a-l~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~nv~~~~~~pq~---~lL~~~~~~~~I~HgG- 387 (500)
-..+++..++.- +.+ ...+|++.-.++...+ +.+-.++ .+.+++.+.+-+|+. ++|...++ |++-+=
T Consensus 208 KGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~----lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlT 281 (426)
T KOG1111|consen 208 KGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRID----LEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLT 281 (426)
T ss_pred cchHHHHHHHHHHHhcCCCeeEEEecCCcccch----HHHHHHHhhccCceEEecccchHHHHHHHhcCcE--EeccHHH
Confidence 344555544433 333 3456666544432221 2222222 345788899999985 57888888 885442
Q ss_pred ---chhHHHHHhcCCceee
Q 010825 388 ---WNSTIESLCAGVPMIC 403 (500)
Q Consensus 388 ---~~s~~eal~~GvP~v~ 403 (500)
.-++.||+.+|.|+|.
T Consensus 282 Eafc~~ivEAaScGL~VVs 300 (426)
T KOG1111|consen 282 EAFCMVIVEAASCGLPVVS 300 (426)
T ss_pred HHHHHHHHHHHhCCCEEEE
Confidence 2368899999999987
No 491
>PLN02285 methionyl-tRNA formyltransferase
Probab=22.94 E-value=6.5e+02 Score=24.70 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCcCcHHHHHHHHHHHHh------CCCEEEEEeCCc
Q 010825 8 CSKVHAVCIPSPSQSHIKAMLKLAKLLHH------KGFHITFVNTEF 48 (500)
Q Consensus 8 ~~~~~il~~~~~~~GH~~p~l~La~~L~~------rGH~Vt~~~~~~ 48 (500)
.+++||+|+-.+..| ....++|.+ .+|+|..+.+..
T Consensus 4 ~~~~kI~f~Gt~~fa-----~~~L~~L~~~~~~~~~~~~iv~Vvt~~ 45 (334)
T PLN02285 4 GRKKRLVFLGTPEVA-----ATVLDALLDASQAPDSAFEVAAVVTQP 45 (334)
T ss_pred CCccEEEEEECCHHH-----HHHHHHHHhhhhccCCCCeEEEEEeCC
Confidence 467999998655443 333444444 378888776543
No 492
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=22.91 E-value=3.5e+02 Score=25.49 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=23.9
Q ss_pred CeeEEEEcCCcc--hHHHHHHHhCCCeEEEeccch
Q 010825 123 AVSCIISDGFLP--FTVTAAQQLGLPIVLLFTISA 155 (500)
Q Consensus 123 ~pDlvI~D~~~~--~~~~~A~~lgiP~v~~~~~~~ 155 (500)
.||+||+-...- .+..=|.++|||+|.+.-+..
T Consensus 157 ~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn~ 191 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTNC 191 (258)
T ss_pred CCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCCC
Confidence 789988544332 566779999999999865533
No 493
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=22.83 E-value=12 Score=20.72 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.1
Q ss_pred CchhHHHHHhcCCceee
Q 010825 387 GWNSTIESLCAGVPMIC 403 (500)
Q Consensus 387 G~~s~~eal~~GvP~v~ 403 (500)
|.|++.-.++.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888888888888764
No 494
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=22.76 E-value=3.8e+02 Score=23.25 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=55.2
Q ss_pred ccCcEEEEcChHHhhHHHHHHHhhhCCCcceecCCchhhhhhhhhhcccccccCCCccchhhhhhhhhcCCCCCceEEEe
Q 010825 229 SKASAIIIHTFDALEQQVLNALSFIFPLQLFTIGPLQLLLNQIEEKDGMLNYIGYNLLKEETECLQWLDSKEPNSVIYVN 308 (500)
Q Consensus 229 ~~~~~~l~ns~~~le~~~~~~~~~~~p~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vV~vs 308 (500)
...+++++-+.++.-......++...| ++..+|-.+..-.+ +..+++.+.+....+ .+|+|.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP-~l~ivg~~~g~f~~----------------~~~~~i~~~I~~~~p-div~vg 108 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYP-GLRIVGYHHGYFDE----------------EEEEAIINRINASGP-DIVFVG 108 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCC-CeEEEEecCCCCCh----------------hhHHHHHHHHHHcCC-CEEEEE
Confidence 345788888888877777888899999 88888855421110 134557777776543 589999
Q ss_pred eccccccCHHHHHHHHHHH-HhCCCCEEEEEc
Q 010825 309 FGSIIIMNKQQLIEVAMGL-VNSNHPFLWIIR 339 (500)
Q Consensus 309 ~Gs~~~~~~~~~~~l~~al-~~~~~~~v~~~~ 339 (500)
+|+--+ +.++... ..++..++..++
T Consensus 109 lG~PkQ------E~~~~~~~~~l~~~v~i~vG 134 (172)
T PF03808_consen 109 LGAPKQ------ERWIARHRQRLPAGVIIGVG 134 (172)
T ss_pred CCCCHH------HHHHHHHHHHCCCCEEEEEC
Confidence 998642 2333333 345666444443
No 495
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.65 E-value=85 Score=29.83 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=37.4
Q ss_pred hhHhhccCCcceeEeecCchhHHHHHh----cCCceeeCCcccchhhhHHHhhhhhcceeEeeeCCCCCCcCHHHHHHHH
Q 010825 370 QEEVLNHPAIGGFFTHSGWNSTIESLC----AGVPMICWPFLGDQPTNCRYTCNEWGVGLEIINGGDDNRVSRNEVEKQV 445 (500)
Q Consensus 370 q~~lL~~~~~~~~I~HgG~~s~~eal~----~GvP~v~~P~~~DQ~~na~~~~~~~G~g~~~~~~~~~~~~~~~~l~~~i 445 (500)
+..+...+++ +|+=||-||+..+++ .++|++.+-.. + +|-. ..++++++.+++
T Consensus 36 ~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G------------~--lGFL-------~~~~~~~~~~~l 92 (272)
T PRK02231 36 LEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG------------N--LGFL-------TDIDPKNAYEQL 92 (272)
T ss_pred hHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC------------C--Cccc-------ccCCHHHHHHHH
Confidence 3445556677 999999999998865 36787764320 1 1111 135667777777
Q ss_pred HHHhC
Q 010825 446 RELMG 450 (500)
Q Consensus 446 ~~vl~ 450 (500)
.++++
T Consensus 93 ~~~~~ 97 (272)
T PRK02231 93 EACLE 97 (272)
T ss_pred HHHHh
Confidence 77776
No 496
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=22.64 E-value=93 Score=30.47 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=26.9
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
+||+|+-.|..| ..+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 578998877777 457888999999999998644
No 497
>PRK13055 putative lipid kinase; Reviewed
Probab=22.61 E-value=2.5e+02 Score=27.50 Aligned_cols=25 Identities=16% Similarity=0.105 Sum_probs=21.1
Q ss_pred eEeecCchhHHHHHhc------CCceeeCCc
Q 010825 382 FFTHSGWNSTIESLCA------GVPMICWPF 406 (500)
Q Consensus 382 ~I~HgG~~s~~eal~~------GvP~v~~P~ 406 (500)
+|--||-||+.|++.. .+|+-++|.
T Consensus 63 vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999999743 467888996
No 498
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.50 E-value=1.1e+02 Score=28.90 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=23.6
Q ss_pred ceEEEeeccccccC-HHHHHHHHHHHHh--CCCCEEEEEcCCC
Q 010825 303 SVIYVNFGSIIIMN-KQQLIEVAMGLVN--SNHPFLWIIRPDL 342 (500)
Q Consensus 303 ~vV~vs~Gs~~~~~-~~~~~~l~~al~~--~~~~~v~~~~~~~ 342 (500)
.++++||||..... ..-+..+.+.++. .+..+.|.++++.
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~ 44 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRI 44 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHH
Confidence 47899999986443 3366667777665 3668888887643
No 499
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=22.45 E-value=1.2e+02 Score=29.67 Aligned_cols=33 Identities=21% Similarity=0.262 Sum_probs=28.2
Q ss_pred cEEEEEcCCCcCcHHHHHHHHHHHHhCCCEEEEEeCCc
Q 010825 11 VHAVCIPSPSQSHIKAMLKLAKLLHHKGFHITFVNTEF 48 (500)
Q Consensus 11 ~~il~~~~~~~GH~~p~l~La~~L~~rGH~Vt~~~~~~ 48 (500)
++|.++-.+++| .+||..|++.||+|++-....
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~~ 34 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRDE 34 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecCH
Confidence 578888888887 579999999999999998754
No 500
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=22.45 E-value=1.5e+02 Score=25.51 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=23.8
Q ss_pred CeeEEEEcCCcc---hHHHHHHHhCCCeEEEe
Q 010825 123 AVSCIISDGFLP---FTVTAAQQLGLPIVLLF 151 (500)
Q Consensus 123 ~pDlvI~D~~~~---~~~~~A~~lgiP~v~~~ 151 (500)
+||+|+...... .+..+|.++|.|++.-.
T Consensus 83 ~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv 114 (168)
T cd01715 83 KPSHILAGATSFGKDLAPRVAAKLDVGLISDV 114 (168)
T ss_pred CCCEEEECCCccccchHHHHHHHhCCCceeeE
Confidence 799999876443 57889999999999853
Done!